Query 046627
Match_columns 767
No_of_seqs 501 out of 3184
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:48:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 1E-40 2.2E-45 372.2 17.6 368 88-530 89-474 (493)
2 PRK00228 hypothetical protein; 100.0 4.1E-40 8.8E-45 332.2 16.4 153 606-766 6-165 (191)
3 COG1678 Putative transcription 100.0 5.5E-40 1.2E-44 324.6 15.4 154 605-765 8-167 (194)
4 PF02622 DUF179: Uncharacteriz 100.0 1.4E-36 3.1E-41 299.2 8.7 142 618-765 1-147 (161)
5 PTZ00102 disulphide isomerase; 100.0 4.3E-30 9.3E-35 291.7 24.0 410 10-531 42-467 (477)
6 TIGR01130 ER_PDI_fam protein d 100.0 1.2E-27 2.6E-32 269.1 19.7 237 238-534 207-459 (462)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.8 4.9E-18 1.1E-22 158.2 11.2 103 382-525 9-113 (113)
8 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 7.7E-18 1.7E-22 152.7 9.9 101 384-525 3-104 (104)
9 PF00085 Thioredoxin: Thioredo 99.7 4.6E-17 9.9E-22 145.6 12.8 103 384-528 1-103 (103)
10 cd03003 PDI_a_ERdj5_N PDIa fam 99.7 2.6E-17 5.6E-22 148.8 9.8 98 384-524 3-100 (101)
11 cd02996 PDI_a_ERp44 PDIa famil 99.7 2.8E-17 6.1E-22 150.5 10.1 106 384-525 3-108 (108)
12 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 4.4E-17 9.6E-22 146.4 10.1 102 384-525 2-104 (104)
13 cd03002 PDI_a_MPD1_like PDI fa 99.7 6.1E-17 1.3E-21 147.5 9.8 104 384-526 2-109 (109)
14 KOG0190 Protein disulfide isom 99.7 6.6E-17 1.4E-21 181.8 9.6 112 383-534 26-137 (493)
15 cd02994 PDI_a_TMX PDIa family, 99.7 3.3E-16 7.2E-21 141.2 11.3 99 384-527 3-101 (101)
16 cd02993 PDI_a_APS_reductase PD 99.7 1.8E-16 3.9E-21 145.9 9.6 105 384-525 3-109 (109)
17 cd03001 PDI_a_P5 PDIa family, 99.7 4.6E-16 1E-20 139.9 10.5 101 384-525 2-102 (103)
18 KOG0191 Thioredoxin/protein di 99.6 3.2E-15 6.9E-20 166.7 18.7 212 251-532 38-255 (383)
19 cd03005 PDI_a_ERp46 PDIa famil 99.6 6.4E-16 1.4E-20 138.7 9.9 101 384-525 2-102 (102)
20 KOG0910 Thioredoxin-like prote 99.6 4.9E-16 1.1E-20 149.4 8.9 105 383-529 44-148 (150)
21 cd02999 PDI_a_ERp44_like PDIa 99.6 7.1E-16 1.5E-20 140.3 9.4 83 410-525 17-100 (100)
22 cd03065 PDI_b_Calsequestrin_N 99.6 1.2E-15 2.6E-20 143.6 10.1 104 382-528 9-118 (120)
23 PRK09381 trxA thioredoxin; Pro 99.6 3E-15 6.4E-20 137.0 12.1 106 382-529 3-108 (109)
24 cd02998 PDI_a_ERp38 PDIa famil 99.6 1.6E-15 3.4E-20 136.3 9.8 103 384-525 2-105 (105)
25 cd02956 ybbN ybbN protein fami 99.6 2.2E-15 4.9E-20 134.4 10.6 85 411-526 12-96 (96)
26 cd03007 PDI_a_ERp29_N PDIa fam 99.6 1E-15 2.3E-20 142.8 8.2 103 384-529 3-116 (116)
27 TIGR01126 pdi_dom protein disu 99.6 2.6E-15 5.6E-20 134.3 10.2 102 387-529 1-102 (102)
28 cd02963 TRX_DnaJ TRX domain, D 99.6 2.9E-15 6.3E-20 138.6 10.7 104 385-527 7-110 (111)
29 cd02985 TRX_CDSP32 TRX family, 99.6 5.6E-15 1.2E-19 134.8 10.7 89 410-528 14-102 (103)
30 COG3118 Thioredoxin domain-con 99.6 2.2E-15 4.9E-20 158.6 9.0 109 383-531 24-132 (304)
31 cd02997 PDI_a_PDIR PDIa family 99.6 7.1E-15 1.5E-19 132.2 10.3 103 384-525 2-104 (104)
32 PTZ00443 Thioredoxin domain-co 99.6 8.4E-15 1.8E-19 151.8 12.0 112 383-532 31-142 (224)
33 PHA02278 thioredoxin-like prot 99.6 1.3E-14 2.9E-19 133.0 10.0 86 411-524 14-100 (103)
34 TIGR00424 APS_reduc 5'-adenyly 99.6 1.2E-14 2.7E-19 164.2 11.2 112 380-527 349-461 (463)
35 cd02992 PDI_a_QSOX PDIa family 99.5 1.7E-14 3.7E-19 134.3 9.8 105 383-523 2-110 (114)
36 cd02950 TxlA TRX-like protein 99.5 8.3E-14 1.8E-18 134.7 13.8 95 410-532 19-113 (142)
37 cd03000 PDI_a_TMX3 PDIa family 99.5 4E-14 8.6E-19 128.9 10.6 89 411-528 15-103 (104)
38 PLN02309 5'-adenylylsulfate re 99.5 3.3E-14 7.2E-19 160.7 11.3 111 380-528 343-456 (457)
39 PRK10996 thioredoxin 2; Provis 99.5 8.9E-14 1.9E-18 134.0 12.0 102 384-528 37-138 (139)
40 cd02953 DsbDgamma DsbD gamma f 99.5 5.1E-14 1.1E-18 127.9 8.8 90 410-526 10-104 (104)
41 cd02954 DIM1 Dim1 family; Dim1 99.5 4.3E-14 9.2E-19 131.7 7.7 75 410-515 13-87 (114)
42 cd02948 TRX_NDPK TRX domain, T 99.5 1.4E-13 3E-18 125.3 10.4 96 388-527 6-101 (102)
43 TIGR01068 thioredoxin thioredo 99.5 1.7E-13 3.6E-18 121.9 10.3 99 388-528 2-100 (101)
44 cd02961 PDI_a_family Protein D 99.5 1.2E-13 2.5E-18 121.9 8.5 100 386-525 2-101 (101)
45 KOG0907 Thioredoxin [Posttrans 99.5 2E-13 4.4E-18 125.8 9.9 87 409-528 19-105 (106)
46 cd02957 Phd_like Phosducin (Ph 99.5 2.7E-13 5.8E-18 125.7 10.3 92 382-515 4-95 (113)
47 KOG4277 Uncharacterized conser 99.4 8.6E-14 1.9E-18 145.1 6.6 95 411-534 43-137 (468)
48 PTZ00102 disulphide isomerase; 99.4 3.3E-13 7.1E-18 153.8 11.9 111 383-534 33-143 (477)
49 TIGR01130 ER_PDI_fam protein d 99.4 3.7E-13 8.1E-18 151.8 11.9 112 383-533 2-113 (462)
50 cd02962 TMX2 TMX2 family; comp 99.4 6.7E-13 1.5E-17 130.0 10.3 92 383-514 29-126 (152)
51 cd02965 HyaE HyaE family; HyaE 99.4 8.6E-13 1.9E-17 122.3 9.8 97 384-523 12-110 (111)
52 PLN00410 U5 snRNP protein, DIM 99.4 9.6E-13 2.1E-17 127.1 10.4 103 389-531 11-122 (142)
53 TIGR02187 GlrX_arch Glutaredox 99.4 2E-11 4.3E-16 125.9 17.8 190 255-527 15-214 (215)
54 cd02951 SoxW SoxW family; SoxW 99.4 2.6E-12 5.6E-17 120.7 10.3 104 410-530 12-120 (125)
55 cd02949 TRX_NTR TRX domain, no 99.4 3.9E-12 8.5E-17 114.4 10.5 86 410-526 12-97 (97)
56 cd02984 TRX_PICOT TRX domain, 99.3 4.5E-12 9.7E-17 113.0 10.2 83 411-525 14-96 (97)
57 cd02989 Phd_like_TxnDC9 Phosdu 99.3 3.6E-12 7.9E-17 118.6 9.7 100 382-525 4-112 (113)
58 PRK15412 thiol:disulfide inter 99.3 9.6E-12 2.1E-16 125.3 13.4 109 411-529 68-176 (185)
59 cd02987 Phd_like_Phd Phosducin 99.3 5.9E-12 1.3E-16 126.1 11.0 106 382-529 62-175 (175)
60 TIGR00385 dsbE periplasmic pro 99.3 2.3E-11 5E-16 121.2 13.0 109 411-529 63-171 (173)
61 KOG0912 Thiol-disulfide isomer 99.3 3.8E-12 8.2E-17 133.6 7.4 110 388-534 2-111 (375)
62 cd03010 TlpA_like_DsbE TlpA-li 99.3 2.8E-11 6.2E-16 113.6 11.7 102 411-521 25-126 (127)
63 cd02975 PfPDO_like_N Pyrococcu 99.2 3.8E-11 8.2E-16 111.8 10.5 88 411-529 22-110 (113)
64 PTZ00051 thioredoxin; Provisio 99.2 3.4E-11 7.3E-16 107.7 9.7 78 411-521 18-95 (98)
65 PRK14018 trifunctional thiored 99.2 5.9E-11 1.3E-15 136.2 14.2 114 410-529 55-173 (521)
66 cd03008 TryX_like_RdCVF Trypar 99.2 2.5E-11 5.4E-16 118.2 9.4 94 410-508 24-125 (146)
67 TIGR01295 PedC_BrcD bacterioci 99.2 3.5E-11 7.7E-16 113.6 10.1 109 384-526 8-121 (122)
68 cd02986 DLP Dim1 family, Dim1- 99.2 2.6E-11 5.6E-16 112.7 8.8 72 410-511 13-84 (114)
69 cd02988 Phd_like_VIAF Phosduci 99.2 2.9E-11 6.3E-16 122.9 9.9 103 382-528 82-191 (192)
70 KOG0908 Thioredoxin-like prote 99.2 2.1E-11 4.6E-16 125.2 8.6 93 409-534 19-111 (288)
71 cd03011 TlpA_like_ScsD_MtbDsbE 99.2 8E-11 1.7E-15 109.5 11.0 101 411-523 20-120 (123)
72 KOG0191 Thioredoxin/protein di 99.2 3.2E-11 7E-16 134.7 9.8 111 384-536 31-141 (383)
73 TIGR02738 TrbB type-F conjugat 99.2 8.3E-11 1.8E-15 115.4 11.2 99 411-528 50-152 (153)
74 PLN02412 probable glutathione 99.2 7.8E-11 1.7E-15 117.0 11.0 119 411-529 29-164 (167)
75 cd02947 TRX_family TRX family; 99.2 1.2E-10 2.7E-15 100.3 10.5 84 411-526 10-93 (93)
76 PRK03147 thiol-disulfide oxido 99.2 1.7E-10 3.7E-15 113.7 12.8 109 411-527 61-170 (173)
77 PF13905 Thioredoxin_8: Thiore 99.2 4.8E-11 1E-15 106.3 7.4 92 411-507 1-94 (95)
78 KOG1731 FAD-dependent sulfhydr 99.2 1.1E-11 2.4E-16 139.6 4.0 111 382-528 39-152 (606)
79 cd02959 ERp19 Endoplasmic reti 99.2 3.8E-11 8.2E-16 112.6 5.8 93 408-529 16-113 (117)
80 cd00340 GSH_Peroxidase Glutath 99.2 1.2E-10 2.6E-15 113.4 9.6 109 411-524 22-151 (152)
81 PLN02399 phospholipid hydroper 99.2 2.1E-10 4.5E-15 120.0 11.8 119 411-529 99-234 (236)
82 PF13098 Thioredoxin_2: Thiore 99.1 9.5E-11 2.1E-15 107.4 7.6 108 408-525 2-112 (112)
83 PTZ00056 glutathione peroxidas 99.1 2.3E-10 5E-15 116.9 11.1 123 411-533 39-182 (199)
84 cd02967 mauD Methylamine utili 99.1 3.3E-10 7.1E-15 104.0 9.9 91 411-514 21-112 (114)
85 cd03012 TlpA_like_DipZ_like Tl 99.1 3.4E-10 7.4E-15 106.6 10.1 98 411-515 23-125 (126)
86 TIGR00411 redox_disulf_1 small 99.1 7.3E-10 1.6E-14 95.6 10.7 80 414-528 2-81 (82)
87 cd02982 PDI_b'_family Protein 99.1 3.8E-10 8.2E-15 101.7 9.2 88 411-528 12-102 (103)
88 PF08534 Redoxin: Redoxin; In 99.1 1.2E-09 2.6E-14 104.9 12.7 105 410-523 27-144 (146)
89 TIGR02540 gpx7 putative glutat 99.1 7.3E-10 1.6E-14 108.0 11.3 115 411-527 22-151 (153)
90 cd02964 TryX_like_family Trypa 99.1 3E-10 6.4E-15 107.9 8.0 93 410-507 16-111 (132)
91 PRK00293 dipZ thiol:disulfide 99.1 4.5E-10 9.7E-15 131.6 10.5 93 409-529 472-570 (571)
92 PRK13728 conjugal transfer pro 99.0 1.4E-09 3.1E-14 109.2 11.5 98 415-531 73-173 (181)
93 cd02952 TRP14_like Human TRX-r 99.0 4.7E-10 1E-14 105.6 7.0 86 411-525 21-118 (119)
94 cd03072 PDI_b'_ERp44 PDIb' fam 99.0 6.9E-10 1.5E-14 103.2 7.5 96 251-351 7-111 (111)
95 cd02966 TlpA_like_family TlpA- 99.0 1.9E-09 4E-14 96.6 10.0 97 411-514 19-116 (116)
96 PLN02919 haloacid dehalogenase 99.0 1.4E-09 2.9E-14 135.5 12.0 113 411-530 420-537 (1057)
97 cd03009 TryX_like_TryX_NRX Try 99.0 1.2E-09 2.7E-14 103.1 9.0 92 411-508 18-112 (131)
98 PTZ00256 glutathione peroxidas 99.0 4.2E-09 9.1E-14 106.1 12.8 119 411-529 40-181 (183)
99 TIGR02740 TraF-like TraF-like 99.0 3.8E-09 8.3E-14 112.9 11.6 100 410-530 165-265 (271)
100 TIGR02187 GlrX_arch Glutaredox 98.9 3.9E-09 8.5E-14 108.9 11.0 91 411-530 19-112 (215)
101 PTZ00062 glutaredoxin; Provisi 98.9 4.7E-09 1E-13 107.6 9.9 81 411-532 17-97 (204)
102 TIGR02661 MauD methylamine deh 98.9 1.5E-08 3.2E-13 102.7 12.5 104 411-528 74-178 (189)
103 cd02955 SSP411 TRX domain, SSP 98.9 8.8E-09 1.9E-13 97.8 9.4 77 407-510 11-95 (124)
104 TIGR01626 ytfJ_HI0045 conserve 98.8 1.6E-08 3.4E-13 102.1 10.9 111 410-525 58-176 (184)
105 PHA02125 thioredoxin-like prot 98.8 2.5E-08 5.3E-13 86.0 9.6 71 415-525 2-73 (75)
106 cd02969 PRX_like1 Peroxiredoxi 98.8 4.4E-08 9.6E-13 97.0 11.9 113 411-530 25-153 (171)
107 TIGR00412 redox_disulf_2 small 98.8 2.9E-08 6.3E-13 85.9 8.8 73 415-525 2-75 (76)
108 cd02958 UAS UAS family; UAS is 98.8 5.3E-08 1.1E-12 90.3 10.7 95 407-529 13-111 (114)
109 PF13848 Thioredoxin_6: Thiore 98.7 3.8E-07 8.2E-12 90.3 16.9 173 275-527 7-184 (184)
110 cd03017 PRX_BCP Peroxiredoxin 98.6 1.5E-07 3.2E-12 89.4 9.9 106 411-525 23-139 (140)
111 PRK09437 bcp thioredoxin-depen 98.6 4.6E-07 9.9E-12 88.1 11.6 107 411-526 30-153 (154)
112 smart00594 UAS UAS domain. 98.6 3.4E-07 7.3E-12 86.4 10.1 101 389-525 13-121 (122)
113 cd02960 AGR Anterior Gradient 98.6 1.3E-07 2.8E-12 90.4 7.2 77 407-514 19-98 (130)
114 PF00578 AhpC-TSA: AhpC/TSA fa 98.6 4.2E-07 9E-12 84.3 10.4 89 411-508 25-121 (124)
115 cd03073 PDI_b'_ERp72_ERp57 PDI 98.5 1.6E-07 3.6E-12 87.4 7.1 92 251-348 7-111 (111)
116 PRK10606 btuE putative glutath 98.5 3.7E-07 8.1E-12 92.3 9.2 118 411-529 25-181 (183)
117 PRK00522 tpx lipid hydroperoxi 98.5 6.9E-07 1.5E-11 88.8 10.9 107 411-526 44-166 (167)
118 COG4232 Thiol:disulfide interc 98.5 2.3E-07 4.9E-12 106.5 7.9 94 410-529 473-568 (569)
119 PF13848 Thioredoxin_6: Thiore 98.5 1.4E-07 3.1E-12 93.2 5.0 105 238-346 67-184 (184)
120 PF13899 Thioredoxin_7: Thiore 98.5 3.1E-07 6.7E-12 80.3 6.4 67 407-504 13-82 (82)
121 cd03015 PRX_Typ2cys Peroxiredo 98.5 8.9E-07 1.9E-11 88.1 10.3 109 411-528 29-156 (173)
122 cd02973 TRX_GRX_like Thioredox 98.4 4.1E-07 8.9E-12 76.0 6.4 56 415-501 3-58 (67)
123 cd02970 PRX_like2 Peroxiredoxi 98.4 7.8E-07 1.7E-11 85.0 9.2 95 411-514 24-148 (149)
124 cd03018 PRX_AhpE_like Peroxire 98.4 2.4E-06 5.3E-11 82.0 10.9 107 412-525 29-147 (149)
125 TIGR03137 AhpC peroxiredoxin. 98.3 2.5E-06 5.3E-11 86.4 10.6 108 411-527 31-154 (187)
126 KOG2501 Thioredoxin, nucleored 98.3 5.9E-07 1.3E-11 87.8 5.1 93 411-508 33-128 (157)
127 cd02968 SCO SCO (an acronym fo 98.3 8.7E-07 1.9E-11 84.3 6.2 100 411-514 22-142 (142)
128 cd02983 P5_C P5 family, C-term 98.3 1.4E-06 3E-11 83.4 7.4 77 273-354 38-121 (130)
129 PRK13190 putative peroxiredoxi 98.3 2.8E-06 6.2E-11 87.1 10.1 112 411-529 27-154 (202)
130 cd03014 PRX_Atyp2cys Peroxired 98.3 2.9E-06 6.3E-11 81.2 9.5 95 411-514 26-128 (143)
131 cd02982 PDI_b'_family Protein 98.3 1.9E-06 4.2E-11 77.5 7.6 94 251-348 3-103 (103)
132 cd02971 PRX_family Peroxiredox 98.3 5.5E-06 1.2E-10 78.5 10.2 98 411-517 22-131 (140)
133 PRK15000 peroxidase; Provision 98.2 1.2E-05 2.6E-10 82.5 10.8 110 411-527 34-160 (200)
134 PRK10382 alkyl hydroperoxide r 98.2 1.2E-05 2.5E-10 81.8 10.6 109 411-528 31-155 (187)
135 cd03026 AhpF_NTD_C TRX-GRX-lik 98.1 1.1E-05 2.4E-10 72.2 9.1 76 411-522 12-87 (89)
136 COG0526 TrxA Thiol-disulfide i 98.1 9E-06 1.9E-10 71.5 7.8 82 411-523 32-118 (127)
137 KOG0913 Thiol-disulfide isomer 98.1 9.2E-07 2E-11 90.9 0.8 104 383-531 25-128 (248)
138 PRK13599 putative peroxiredoxi 98.0 2.3E-05 5E-10 81.3 10.2 111 411-528 28-155 (215)
139 cd03016 PRX_1cys Peroxiredoxin 98.0 2.5E-05 5.5E-10 80.1 9.8 110 413-529 28-154 (203)
140 PTZ00137 2-Cys peroxiredoxin; 98.0 3.5E-05 7.5E-10 82.2 10.5 111 411-528 98-224 (261)
141 PRK13189 peroxiredoxin; Provis 98.0 4.2E-05 9.2E-10 79.7 10.5 111 411-528 35-162 (222)
142 PRK11509 hydrogenase-1 operon 98.0 5.8E-05 1.3E-09 72.5 10.5 108 384-533 19-128 (132)
143 PRK13191 putative peroxiredoxi 97.9 4.3E-05 9.2E-10 79.3 10.0 111 411-528 33-160 (215)
144 cd01659 TRX_superfamily Thiore 97.9 3.2E-05 6.8E-10 60.4 7.1 63 415-505 1-63 (69)
145 COG2143 Thioredoxin-related pr 97.9 7.3E-05 1.6E-09 72.8 10.6 104 409-527 40-147 (182)
146 TIGR02196 GlrX_YruB Glutaredox 97.9 4.9E-05 1.1E-09 63.3 7.5 72 415-526 2-74 (74)
147 cd02991 UAS_ETEA UAS family, E 97.8 9.6E-05 2.1E-09 69.5 8.8 93 408-529 14-113 (116)
148 PTZ00253 tryparedoxin peroxida 97.7 0.00016 3.4E-09 73.9 10.4 111 411-528 36-163 (199)
149 TIGR02200 GlrX_actino Glutared 97.5 0.0002 4.4E-09 60.7 6.5 23 415-437 2-24 (77)
150 PF13728 TraF: F plasmid trans 97.5 0.00057 1.2E-08 71.0 10.6 94 411-525 120-214 (215)
151 PF02114 Phosducin: Phosducin; 97.4 0.00075 1.6E-08 72.3 10.3 110 382-533 125-242 (265)
152 TIGR02180 GRX_euk Glutaredoxin 97.4 0.00026 5.6E-09 61.2 5.4 23 415-437 1-23 (84)
153 PF07912 ERp29_N: ERp29, N-ter 97.3 0.0039 8.4E-08 58.9 11.7 109 384-532 6-122 (126)
154 KOG0914 Thioredoxin-like prote 97.2 0.00031 6.6E-09 71.9 4.4 84 384-506 126-216 (265)
155 TIGR02739 TraF type-F conjugat 97.1 0.0034 7.4E-08 66.9 10.5 98 411-529 150-248 (256)
156 TIGR03143 AhpF_homolog putativ 97.1 0.013 2.8E-07 69.1 16.4 180 259-525 364-554 (555)
157 PRK13703 conjugal pilus assemb 97.0 0.0042 9.2E-08 65.8 10.4 98 411-529 143-241 (248)
158 PF14595 Thioredoxin_9: Thiore 96.9 0.0012 2.7E-08 63.2 5.5 78 411-517 41-118 (129)
159 PF13192 Thioredoxin_3: Thiore 96.9 0.0056 1.2E-07 52.9 8.5 73 416-526 3-76 (76)
160 PTZ00062 glutaredoxin; Provisi 96.9 0.0065 1.4E-07 62.7 10.3 83 251-349 7-95 (204)
161 PF03190 Thioredox_DsbH: Prote 96.8 0.0025 5.5E-08 63.4 6.8 94 408-528 34-143 (163)
162 PRK11200 grxA glutaredoxin 1; 96.7 0.0067 1.5E-07 53.3 7.5 79 415-530 3-84 (85)
163 PF06110 DUF953: Eukaryotic pr 96.6 0.0036 7.7E-08 59.3 5.7 75 410-505 18-99 (119)
164 cd02976 NrdH NrdH-redoxin (Nrd 96.6 0.0086 1.9E-07 49.6 7.3 21 415-435 2-22 (73)
165 KOG3425 Uncharacterized conser 96.5 0.0045 9.8E-08 58.1 5.3 42 411-452 25-74 (128)
166 cd03419 GRX_GRXh_1_2_like Glut 96.5 0.0031 6.8E-08 54.2 4.1 24 415-438 2-25 (82)
167 KOG0910 Thioredoxin-like prote 96.5 0.008 1.7E-07 58.8 7.2 89 253-349 54-149 (150)
168 cd03071 PDI_b'_NRX PDIb' famil 96.4 0.012 2.5E-07 54.3 7.5 86 259-348 13-115 (116)
169 cd02981 PDI_b_family Protein D 96.4 0.017 3.6E-07 51.4 8.3 81 411-528 17-97 (97)
170 PRK10877 protein disulfide iso 96.3 0.025 5.3E-07 59.6 10.4 108 411-528 107-230 (232)
171 TIGR01126 pdi_dom protein disu 96.3 0.018 3.9E-07 51.0 7.9 90 251-347 4-101 (102)
172 cd03020 DsbA_DsbC_DsbG DsbA fa 96.2 0.011 2.4E-07 60.1 7.3 108 411-525 77-197 (197)
173 cd03001 PDI_a_P5 PDIa family, 96.2 0.02 4.4E-07 51.1 7.6 88 251-344 8-102 (103)
174 cd03003 PDI_a_ERdj5_N PDIa fam 96.1 0.022 4.7E-07 51.3 7.6 86 251-343 9-100 (101)
175 PF00085 Thioredoxin: Thioredo 96.1 0.015 3.3E-07 51.5 6.4 89 251-346 7-102 (103)
176 PF01216 Calsequestrin: Calseq 96.0 0.05 1.1E-06 59.7 11.0 181 381-625 33-226 (383)
177 cd02996 PDI_a_ERp44 PDIa famil 96.0 0.019 4.2E-07 52.3 6.9 88 251-344 9-108 (108)
178 cd02950 TxlA TRX-like protein 96.0 0.048 1E-06 52.9 10.0 99 252-356 12-118 (142)
179 PRK15317 alkyl hydroperoxide r 95.9 0.14 3E-06 59.9 15.2 81 412-528 117-197 (517)
180 cd03004 PDI_a_ERdj5_C PDIa fam 95.9 0.024 5.3E-07 51.0 6.9 88 251-344 9-104 (104)
181 TIGR02190 GlrX-dom Glutaredoxi 95.7 0.014 3E-07 50.7 4.2 26 410-435 5-30 (79)
182 cd02066 GRX_family Glutaredoxi 95.6 0.027 5.9E-07 46.2 5.6 23 415-437 2-24 (72)
183 COG1225 Bcp Peroxiredoxin [Pos 95.6 0.11 2.4E-06 51.5 10.7 109 411-528 30-155 (157)
184 cd03002 PDI_a_MPD1_like PDI fa 95.4 0.056 1.2E-06 48.9 7.6 89 251-345 8-109 (109)
185 PF00462 Glutaredoxin: Glutare 95.4 0.037 8E-07 45.2 5.7 22 415-436 1-22 (60)
186 PRK10996 thioredoxin 2; Provis 95.3 0.065 1.4E-06 51.7 7.8 90 251-347 43-138 (139)
187 KOG0911 Glutaredoxin-related p 95.3 0.011 2.4E-07 61.2 2.6 78 411-520 17-94 (227)
188 cd02993 PDI_a_APS_reductase PD 95.2 0.059 1.3E-06 49.4 7.0 90 251-344 9-109 (109)
189 KOG0912 Thiol-disulfide isomer 95.1 0.26 5.5E-06 53.4 12.3 56 292-350 49-108 (375)
190 cd02956 ybbN ybbN protein fami 95.0 0.095 2.1E-06 46.4 7.7 87 252-345 2-96 (96)
191 PHA03050 glutaredoxin; Provisi 94.9 0.039 8.5E-07 51.3 4.8 22 415-436 15-36 (108)
192 cd03073 PDI_b'_ERp72_ERp57 PDI 94.8 0.13 2.8E-06 48.1 8.2 72 426-528 33-110 (111)
193 PRK11657 dsbG disulfide isomer 94.8 0.1 2.2E-06 55.6 8.3 116 410-526 116-249 (251)
194 KOG1672 ATP binding protein [P 94.7 0.069 1.5E-06 54.3 6.4 85 411-527 84-176 (211)
195 cd02972 DsbA_family DsbA famil 94.7 0.086 1.9E-06 45.6 6.4 35 415-449 1-35 (98)
196 cd02998 PDI_a_ERp38 PDIa famil 94.7 0.11 2.4E-06 46.1 7.3 88 251-344 8-105 (105)
197 KOG4277 Uncharacterized conser 94.6 0.47 1E-05 51.1 12.6 85 244-349 42-133 (468)
198 cd03007 PDI_a_ERp29_N PDIa fam 94.6 0.19 4E-06 47.5 8.5 88 251-346 9-114 (116)
199 cd02995 PDI_a_PDI_a'_C PDIa fa 94.5 0.15 3.2E-06 45.3 7.5 88 251-344 8-104 (104)
200 cd03072 PDI_b'_ERp44 PDIb' fam 94.4 0.16 3.4E-06 47.4 7.6 101 385-529 2-108 (111)
201 TIGR03140 AhpF alkyl hydropero 94.4 0.8 1.7E-05 53.7 15.2 82 411-528 117-198 (515)
202 TIGR02183 GRXA Glutaredoxin, G 94.3 0.08 1.7E-06 46.8 5.2 25 415-439 2-26 (86)
203 cd03006 PDI_a_EFP1_N PDIa fami 94.3 0.11 2.4E-06 48.6 6.4 87 251-344 17-113 (113)
204 PRK09381 trxA thioredoxin; Pro 94.3 0.2 4.2E-06 45.6 7.9 91 251-348 11-108 (109)
205 cd03023 DsbA_Com1_like DsbA fa 94.2 0.055 1.2E-06 51.5 4.4 32 410-441 4-35 (154)
206 KOG2603 Oligosaccharyltransfer 94.0 0.26 5.7E-06 53.5 9.1 119 383-532 41-169 (331)
207 cd03065 PDI_b_Calsequestrin_N 93.8 0.27 5.9E-06 46.6 8.1 90 251-348 17-119 (120)
208 cd03005 PDI_a_ERp46 PDIa famil 93.8 0.18 3.8E-06 44.8 6.5 86 251-344 8-102 (102)
209 TIGR02189 GlrX-like_plant Glut 93.6 0.11 2.3E-06 47.5 4.8 22 415-436 10-31 (99)
210 cd02983 P5_C P5 family, C-term 93.5 0.3 6.5E-06 46.9 7.9 77 427-533 40-119 (130)
211 cd02961 PDI_a_family Protein D 93.5 0.24 5.1E-06 43.0 6.7 87 252-344 7-101 (101)
212 PRK10329 glutaredoxin-like pro 93.2 0.63 1.4E-05 40.9 8.8 75 415-530 3-78 (81)
213 cd03029 GRX_hybridPRX5 Glutare 93.0 0.13 2.9E-06 43.4 4.2 21 415-435 3-23 (72)
214 cd02953 DsbDgamma DsbD gamma f 92.7 0.32 6.9E-06 43.9 6.5 89 253-344 4-103 (104)
215 cd03027 GRX_DEP Glutaredoxin ( 92.7 0.29 6.4E-06 41.5 5.9 22 415-436 3-24 (73)
216 cd02963 TRX_DnaJ TRX domain, D 92.6 0.26 5.7E-06 45.5 6.0 81 259-346 23-110 (111)
217 COG3118 Thioredoxin domain-con 92.6 0.34 7.3E-06 52.5 7.5 86 257-350 40-132 (304)
218 cd02999 PDI_a_ERp44_like PDIa 92.6 0.28 6.1E-06 44.5 6.0 79 258-344 16-100 (100)
219 cd02948 TRX_NDPK TRX domain, T 92.5 0.48 1E-05 42.9 7.4 88 251-346 8-101 (102)
220 KOG3414 Component of the U4/U6 92.4 0.65 1.4E-05 44.3 8.2 68 410-507 22-89 (142)
221 TIGR01068 thioredoxin thioredo 92.3 0.7 1.5E-05 40.4 8.1 84 257-347 11-100 (101)
222 cd03418 GRX_GRXb_1_3_like Glut 92.1 0.2 4.3E-06 42.3 4.1 22 415-436 2-23 (75)
223 TIGR02181 GRX_bact Glutaredoxi 92.0 0.19 4E-06 43.2 3.9 22 415-436 1-22 (79)
224 cd02997 PDI_a_PDIR PDIa family 91.9 0.56 1.2E-05 41.7 7.0 86 252-344 9-104 (104)
225 TIGR00424 APS_reduc 5'-adenyly 91.9 0.55 1.2E-05 54.3 8.6 91 251-346 359-461 (463)
226 PLN02309 5'-adenylylsulfate re 91.8 0.51 1.1E-05 54.6 8.2 92 251-347 353-456 (457)
227 PTZ00443 Thioredoxin domain-co 91.7 0.53 1.2E-05 49.4 7.6 92 251-349 38-140 (224)
228 cd02994 PDI_a_TMX PDIa family, 91.4 0.81 1.7E-05 40.8 7.5 86 251-346 9-101 (101)
229 TIGR00365 monothiol glutaredox 91.3 0.53 1.2E-05 42.8 6.2 26 411-436 11-40 (97)
230 KOG3170 Conserved phosducin-li 91.2 0.78 1.7E-05 47.1 7.7 108 382-532 91-204 (240)
231 PF13743 Thioredoxin_5: Thiore 91.0 0.37 8.1E-06 48.5 5.4 28 417-444 2-29 (176)
232 COG0386 BtuE Glutathione perox 90.9 1.7 3.8E-05 42.9 9.6 118 411-529 25-160 (162)
233 PRK11509 hydrogenase-1 operon 90.9 1.4 3E-05 42.6 8.9 97 246-350 18-126 (132)
234 cd03019 DsbA_DsbA DsbA family, 90.8 0.28 6.1E-06 48.2 4.3 36 411-446 15-50 (178)
235 TIGR02194 GlrX_NrdH Glutaredox 90.8 0.56 1.2E-05 39.8 5.6 20 416-435 2-21 (72)
236 PF01216 Calsequestrin: Calseq 90.6 11 0.00025 41.9 16.5 194 251-532 42-250 (383)
237 PRK10638 glutaredoxin 3; Provi 90.4 0.33 7.1E-06 42.4 3.9 22 415-436 4-25 (83)
238 cd03028 GRX_PICOT_like Glutare 89.8 0.47 1E-05 42.3 4.4 27 411-437 7-37 (90)
239 cd02965 HyaE HyaE family; HyaE 89.7 0.98 2.1E-05 42.4 6.6 68 251-322 18-93 (111)
240 cd02989 Phd_like_TxnDC9 Phosdu 89.7 1.5 3.2E-05 40.8 7.8 89 251-344 13-112 (113)
241 PF13462 Thioredoxin_4: Thiore 89.5 0.68 1.5E-05 44.6 5.7 42 410-451 11-54 (162)
242 cd02949 TRX_NTR TRX domain, no 89.2 1.2 2.6E-05 39.7 6.7 83 255-344 8-96 (97)
243 cd03013 PRX5_like Peroxiredoxi 89.2 1.1 2.5E-05 44.0 7.1 88 411-508 30-133 (155)
244 cd02951 SoxW SoxW family; SoxW 89.2 1.6 3.5E-05 40.7 7.8 94 255-351 8-122 (125)
245 PF07449 HyaE: Hydrogenase-1 e 88.4 1 2.2E-05 42.0 5.7 94 383-520 10-106 (107)
246 cd03000 PDI_a_TMX3 PDIa family 88.3 2.1 4.5E-05 38.6 7.7 88 251-347 7-103 (104)
247 PF00837 T4_deiodinase: Iodoth 88.1 6.1 0.00013 41.9 11.8 127 383-528 83-236 (237)
248 cd03067 PDI_b_PDIR_N PDIb fami 87.9 1.9 4.2E-05 39.8 6.9 96 390-527 10-110 (112)
249 cd02957 Phd_like Phosducin (Ph 87.7 2.3 5.1E-05 39.1 7.7 79 261-344 25-112 (113)
250 cd02984 TRX_PICOT TRX domain, 87.7 1.7 3.8E-05 38.2 6.6 84 253-344 5-96 (97)
251 KOG1752 Glutaredoxin and relat 87.2 1.7 3.7E-05 40.3 6.4 21 415-435 16-36 (104)
252 KOG2640 Thioredoxin [Function 87.2 0.23 5E-06 53.9 0.7 90 411-532 76-165 (319)
253 TIGR03143 AhpF_homolog putativ 87.0 3 6.4E-05 49.5 10.0 94 411-535 366-463 (555)
254 COG0695 GrxC Glutaredoxin and 86.6 1.1 2.4E-05 39.3 4.5 22 415-436 3-24 (80)
255 PHA02278 thioredoxin-like prot 86.5 2.6 5.7E-05 38.7 7.3 85 252-343 6-100 (103)
256 cd02975 PfPDO_like_N Pyrococcu 86.5 2.9 6.3E-05 38.8 7.6 86 257-349 19-111 (113)
257 cd02985 TRX_CDSP32 TRX family, 86.5 2.5 5.3E-05 38.4 7.0 78 260-346 15-101 (103)
258 PRK10824 glutaredoxin-4; Provi 86.0 1 2.2E-05 42.6 4.3 16 421-436 28-43 (115)
259 cd02954 DIM1 Dim1 family; Dim1 86.0 1.6 3.5E-05 41.1 5.6 60 259-322 13-78 (114)
260 cd02947 TRX_family TRX family; 85.4 3.2 6.8E-05 34.9 6.8 85 252-344 2-92 (93)
261 PF11009 DUF2847: Protein of u 84.5 6 0.00013 36.8 8.5 85 410-521 18-104 (105)
262 cd02981 PDI_b_family Protein D 83.9 4.5 9.8E-05 35.7 7.4 85 254-346 11-96 (97)
263 PF05768 DUF836: Glutaredoxin- 83.5 3.4 7.3E-05 36.1 6.2 79 415-526 2-81 (81)
264 PF02966 DIM1: Mitosis protein 82.3 6.8 0.00015 37.9 8.1 71 410-511 19-90 (133)
265 cd03066 PDI_b_Calsequestrin_mi 82.1 9.2 0.0002 34.7 8.8 81 411-528 19-100 (102)
266 TIGR01295 PedC_BrcD bacterioci 81.4 6.7 0.00015 37.1 7.8 90 251-345 14-121 (122)
267 KOG0907 Thioredoxin [Posttrans 81.3 4.7 0.0001 37.4 6.6 78 260-347 21-105 (106)
268 cd03069 PDI_b_ERp57 PDIb famil 80.7 12 0.00026 34.2 9.0 80 411-528 18-103 (104)
269 PRK10954 periplasmic protein d 80.6 1.6 3.4E-05 45.0 3.5 37 411-447 37-76 (207)
270 PTZ00051 thioredoxin; Provisio 80.0 5.4 0.00012 35.1 6.4 67 251-321 9-80 (98)
271 cd02958 UAS UAS family; UAS is 76.5 12 0.00027 34.3 7.9 89 257-349 14-112 (114)
272 PRK12759 bifunctional gluaredo 76.2 2.6 5.7E-05 48.1 4.0 22 415-436 4-25 (410)
273 cd02987 Phd_like_Phd Phosducin 75.0 11 0.00023 38.1 7.6 82 261-347 84-174 (175)
274 PF07912 ERp29_N: ERp29, N-ter 74.3 21 0.00045 34.3 8.7 92 251-346 12-117 (126)
275 TIGR02740 TraF-like TraF-like 74.1 14 0.00031 39.8 8.8 85 260-349 166-265 (271)
276 PLN00410 U5 snRNP protein, DIM 70.2 21 0.00045 35.0 8.1 90 258-351 21-123 (142)
277 cd02988 Phd_like_VIAF Phosduci 70.0 14 0.00029 38.0 7.1 81 260-346 102-190 (192)
278 PF00255 GSHPx: Glutathione pe 69.7 18 0.00039 33.8 7.1 42 411-453 21-63 (108)
279 PF13098 Thioredoxin_2: Thiore 69.1 8.1 0.00018 34.9 4.8 34 309-344 79-112 (112)
280 cd02952 TRP14_like Human TRX-r 68.6 16 0.00035 34.7 6.7 85 252-344 11-118 (119)
281 PF02630 SCO1-SenC: SCO1/SenC; 68.0 23 0.00049 35.5 8.1 100 411-514 52-173 (174)
282 KOG3171 Conserved phosducin-li 64.7 8.5 0.00018 40.1 4.2 105 383-529 139-251 (273)
283 cd02992 PDI_a_QSOX PDIa family 64.4 13 0.00029 34.4 5.2 69 251-323 9-89 (114)
284 COG0450 AhpC Peroxiredoxin [Po 63.9 19 0.00042 37.0 6.6 110 411-527 33-159 (194)
285 COG1999 Uncharacterized protei 63.5 78 0.0017 32.8 11.2 118 410-530 66-205 (207)
286 TIGR00411 redox_disulf_1 small 62.7 33 0.00071 28.9 7.1 71 266-347 5-81 (82)
287 cd02962 TMX2 TMX2 family; comp 61.3 22 0.00048 35.1 6.4 69 251-322 36-118 (152)
288 cd03069 PDI_b_ERp57 PDIb famil 61.1 31 0.00067 31.4 6.9 85 253-346 11-102 (104)
289 smart00594 UAS UAS domain. 60.8 37 0.0008 31.8 7.6 86 257-344 24-121 (122)
290 cd02986 DLP Dim1 family, Dim1- 60.2 22 0.00048 33.6 5.8 59 259-321 13-77 (114)
291 cd02955 SSP411 TRX domain, SSP 58.6 45 0.00096 31.8 7.8 93 254-347 9-118 (124)
292 cd03067 PDI_b_PDIR_N PDIb fami 58.0 23 0.00051 32.9 5.4 89 251-346 10-110 (112)
293 cd02977 ArsC_family Arsenate R 55.4 10 0.00022 34.6 2.7 21 416-436 2-22 (105)
294 PRK00293 dipZ thiol:disulfide 54.3 51 0.0011 39.5 9.1 87 258-348 472-570 (571)
295 TIGR02738 TrbB type-F conjugat 53.7 65 0.0014 31.8 8.3 37 309-347 115-152 (153)
296 cd03035 ArsC_Yffb Arsenate Red 53.6 11 0.00024 34.7 2.7 21 416-436 2-22 (105)
297 PRK14018 trifunctional thiored 53.4 32 0.0007 40.7 7.0 47 298-347 126-172 (521)
298 cd03066 PDI_b_Calsequestrin_mi 53.4 63 0.0014 29.2 7.6 87 253-346 11-99 (102)
299 cd00570 GST_N_family Glutathio 49.2 32 0.00069 27.0 4.5 21 416-436 2-22 (71)
300 cd03060 GST_N_Omega_like GST_N 49.2 16 0.00035 30.5 2.8 21 416-436 2-22 (71)
301 TIGR00385 dsbE periplasmic pro 48.4 56 0.0012 32.4 7.0 50 297-349 123-172 (173)
302 cd03031 GRX_GRX_like Glutaredo 47.9 43 0.00093 33.0 5.9 22 415-436 2-29 (147)
303 cd03036 ArsC_like Arsenate Red 47.5 16 0.00035 33.9 2.7 21 416-436 2-22 (111)
304 COG1331 Highly conserved prote 47.5 67 0.0014 39.0 8.4 42 409-450 41-85 (667)
305 cd03068 PDI_b_ERp72 PDIb famil 46.6 1.5E+02 0.0033 27.3 9.1 80 412-528 20-107 (107)
306 PRK01655 spxA transcriptional 46.2 20 0.00043 34.5 3.2 22 415-436 2-23 (131)
307 COG1651 DsbG Protein-disulfide 45.5 16 0.00035 38.1 2.7 37 487-529 207-243 (244)
308 PLN02919 haloacid dehalogenase 42.1 70 0.0015 41.3 8.1 84 259-348 419-536 (1057)
309 TIGR01617 arsC_related transcr 38.4 26 0.00057 32.7 2.7 20 416-435 2-21 (117)
310 cd02991 UAS_ETEA UAS family, E 38.1 1.6E+02 0.0035 27.6 7.9 90 259-350 16-115 (116)
311 KOG2507 Ubiquitin regulatory p 37.6 1.6E+02 0.0035 33.9 9.0 90 411-528 18-110 (506)
312 cd03051 GST_N_GTT2_like GST_N 36.7 28 0.00061 28.5 2.4 21 416-436 2-22 (74)
313 PF13462 Thioredoxin_4: Thiore 36.1 44 0.00095 31.9 4.0 34 488-527 129-162 (162)
314 KOG1651 Glutathione peroxidase 36.0 3.1E+02 0.0066 27.9 9.7 104 411-514 34-154 (171)
315 PF06053 DUF929: Domain of unk 35.6 1.2E+02 0.0026 32.6 7.4 21 410-430 57-77 (249)
316 cd03045 GST_N_Delta_Epsilon GS 35.1 62 0.0013 26.7 4.2 21 416-436 2-22 (74)
317 cd03074 PDI_b'_Calsequestrin_C 35.0 1.7E+02 0.0037 27.7 7.2 84 262-348 21-120 (120)
318 cd03040 GST_N_mPGES2 GST_N fam 34.5 43 0.00094 28.1 3.2 22 415-436 2-23 (77)
319 PRK12559 transcriptional regul 34.2 39 0.00085 32.5 3.2 22 415-436 2-23 (131)
320 cd02966 TlpA_like_family TlpA- 34.2 1E+02 0.0023 26.5 5.8 27 301-328 87-113 (116)
321 cd03009 TryX_like_TryX_NRX Try 33.4 90 0.0019 29.0 5.5 16 309-324 96-111 (131)
322 cd02974 AhpF_NTD_N Alkyl hydro 33.0 1.5E+02 0.0033 26.9 6.6 73 411-526 19-91 (94)
323 PRK15412 thiol:disulfide inter 33.0 1.5E+02 0.0033 29.7 7.4 52 296-350 127-178 (185)
324 cd03032 ArsC_Spx Arsenate Redu 33.0 43 0.00094 31.1 3.2 22 415-436 2-23 (115)
325 cd03025 DsbA_FrnE_like DsbA fa 32.8 44 0.00096 33.1 3.5 28 415-442 3-30 (193)
326 cd03037 GST_N_GRX2 GST_N famil 31.6 34 0.00075 28.3 2.1 20 417-436 3-22 (71)
327 PF13728 TraF: F plasmid trans 31.4 1.5E+02 0.0033 30.9 7.3 57 284-342 143-212 (215)
328 PHA03075 glutaredoxin-like pro 31.2 43 0.00094 31.8 2.8 30 412-441 2-31 (123)
329 COG1651 DsbG Protein-disulfide 30.1 76 0.0016 33.0 4.8 31 411-441 84-114 (244)
330 PRK03147 thiol-disulfide oxido 29.7 2.5E+02 0.0054 27.2 8.2 44 301-347 128-171 (173)
331 PF08806 Sep15_SelM: Sep15/Sel 28.9 72 0.0016 28.1 3.7 35 495-529 41-76 (78)
332 cd03059 GST_N_SspA GST_N famil 28.8 50 0.0011 27.2 2.6 21 416-436 2-22 (73)
333 cd02959 ERp19 Endoplasmic reti 28.5 82 0.0018 29.4 4.3 67 255-324 14-88 (117)
334 PF04592 SelP_N: Selenoprotein 27.9 1.6E+02 0.0034 31.5 6.5 94 410-508 25-122 (238)
335 PF01323 DSBA: DSBA-like thior 27.1 84 0.0018 31.0 4.4 28 414-441 1-28 (193)
336 PF01323 DSBA: DSBA-like thior 27.0 96 0.0021 30.6 4.7 34 488-526 160-193 (193)
337 PF13899 Thioredoxin_7: Thiore 26.8 49 0.0011 28.4 2.3 65 255-321 12-82 (82)
338 PRK15317 alkyl hydroperoxide r 26.3 1.6E+02 0.0036 34.5 7.2 83 411-535 18-103 (517)
339 cd03041 GST_N_2GST_N GST_N fam 26.1 52 0.0011 27.9 2.3 22 415-436 2-23 (77)
340 TIGR02739 TraF type-F conjugat 25.6 2.7E+02 0.0059 30.0 8.1 64 284-349 173-249 (256)
341 KOG0908 Thioredoxin-like prote 25.5 84 0.0018 33.8 4.1 62 284-350 44-108 (288)
342 PF11097 DUF2883: Protein of u 25.3 55 0.0012 27.9 2.1 18 730-747 6-23 (75)
343 COG4545 Glutaredoxin-related p 25.2 62 0.0013 28.6 2.5 23 416-438 5-27 (85)
344 PRK13344 spxA transcriptional 24.6 71 0.0015 30.7 3.2 21 415-435 2-22 (132)
345 cd03011 TlpA_like_ScsD_MtbDsbE 24.5 1.3E+02 0.0028 27.4 4.8 51 287-341 68-119 (123)
346 PF08534 Redoxin: Redoxin; In 24.4 1.2E+02 0.0027 28.5 4.8 46 284-330 77-132 (146)
347 cd03068 PDI_b_ERp72 PDIb famil 24.3 2.7E+02 0.0059 25.6 6.9 86 254-346 12-106 (107)
348 cd02964 TryX_like_family Trypa 23.8 1.7E+02 0.0038 27.3 5.6 15 309-323 96-110 (132)
349 cd03012 TlpA_like_DipZ_like Tl 23.1 1.6E+02 0.0035 27.2 5.2 46 284-330 77-123 (126)
350 cd02969 PRX_like1 Peroxiredoxi 22.5 5.6E+02 0.012 24.9 9.2 68 284-352 81-156 (171)
351 KOG2792 Putative cytochrome C 21.9 2.9E+02 0.0062 30.1 7.1 115 411-530 139-276 (280)
352 KOG1731 FAD-dependent sulfhydr 21.8 1.1E+02 0.0023 36.6 4.4 90 246-349 58-154 (606)
353 PRK13703 conjugal pilus assemb 21.3 3.5E+02 0.0077 29.1 7.9 65 284-350 166-243 (248)
354 KOG2501 Thioredoxin, nucleored 21.1 1.4E+02 0.003 30.0 4.4 65 251-323 57-126 (157)
355 TIGR02742 TrbC_Ftype type-F co 20.8 2E+02 0.0043 27.9 5.3 48 485-532 61-118 (130)
356 PF14822 Vasohibin: Vasohibin 20.1 50 0.0011 35.1 1.2 56 626-681 144-210 (246)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-40 Score=372.18 Aligned_cols=368 Identities=17% Similarity=0.239 Sum_probs=271.7
Q ss_pred chhhhhcccccceEEEEecCCceeecCcccccCCCCcHHHHHHHHHhhcCCCccchhh-hhhcceeccCCccceeccCCC
Q 046627 88 SPRAQKLKFHDKMSIMVLDEGKHISLDSIATDSQGNSLQEILEYLLQKRKGAKLSSVA-KEVGFRLLSDDIDIKIADEPS 166 (767)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~-~~~~~~~l~d~~~~~~~~~~~ 166 (767)
+..|.+.++++..++.|+.||+. .-.+ ..++....|++||.++++ +-...|. ++-+=.+|++ -++-|++.+.
T Consensus 89 ~~~~~~y~v~gyPTlkiFrnG~~--~~~Y---~G~r~adgIv~wl~kq~g-Pa~~~l~~~~~a~~~l~~-~~~~vig~F~ 161 (493)
T KOG0190|consen 89 SDLASKYEVRGYPTLKIFRNGRS--AQDY---NGPREADGIVKWLKKQSG-PASKTLKTVDEAEEFLSK-KDVVVIGFFK 161 (493)
T ss_pred hhhHhhhcCCCCCeEEEEecCCc--ceec---cCcccHHHHHHHHHhccC-CCceecccHHHHHhhccC-CceEEEEEec
Confidence 67889999999999999999997 2222 467899999999999998 4444444 7777778887 6677777777
Q ss_pred CcccccccCCCCCCCCccCceee---ecccCCCCCCCCCCCchhhhhcccCCCCCCCCCCccccccccccccceeeeEEe
Q 046627 167 TSQTEFQPNQVSTTPSEEGLITV---NVDLDKDQSPHGASIPAVERKENSKSSDMSSHHDDEQKVSVDTKEQYQKVSVDT 243 (767)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~fi~ 243 (767)
...+.-++-...++...+.+.-. +.++.+.+.+...++.. .==.|.. ++....-+...+. +. ++.||.
T Consensus 162 d~~~~~~~~~~~a~~l~~d~~F~~ts~~~~~~~~~~~~~~~~~---i~l~kk~-d~~~~~~~~~~~~----~~-l~~Fi~ 232 (493)
T KOG0190|consen 162 DLESLAESFFDAASKLRDDYKFAHTSDSDVAKKLELNTEGTFP---IVLFKKF-DELLVKYDGSFTP----EL-LKKFIQ 232 (493)
T ss_pred ccccchHHHHHHHHhccccceeeccCcHhHHhhccCCCCCcce---EEecccc-ccchhhcccccCH----HH-HHHHHH
Confidence 55333322222222222222211 11121211111111000 0000111 1111121222222 22 778999
Q ss_pred cccccce-----echHHhhcCCccEEEEeecCC--cChhhh-cccCCchhhhhcCCceEEEE--eC--ChhhhhhhcCC-
Q 046627 244 KEQLIPE-----ASDQYYLGHDLTTAKDVKVGE--KSSSQI-SMSGDPQLEFQGFRGSFFFN--DG--NYRLLGALTGG- 310 (767)
Q Consensus 244 sn~lPlV-----etf~~~~~~~~p~~~~f~~~~--e~s~~~-e~l~~~~~~A~~fkgk~~fv--D~--~~~~l~~~~~~- 310 (767)
.+.+|+| +++..++++.++..++|+... +..+.+ ..+ +++|++|||++.|+ |. ..+.+++|+..
T Consensus 233 ~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~vAk~f~~~l~Fi~~d~e~~~~~~~~~Gl~~ 309 (493)
T KOG0190|consen 233 ENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKF---EEVAKKFKGKLRFILIDPESFARVLEFFGLEE 309 (493)
T ss_pred HhcccccceecccccceeeccccccceeEEeccccccHHHHHHHH---HHHHHhcccceEEEEEChHHhhHHHHhcCccc
Confidence 9999999 566789999999999887633 356666 666 99999999999886 43 25788988655
Q ss_pred CCCcEEEEEcCCCCceeecCCccCCCHHHHHHHHHHHhcCCcCCCcccccccccccCCCCCCccccCccccCceeeeccc
Q 046627 311 STIPSLAIVDPISNQHYVASKEATFNYSSMADFLHGFLNGTLLPYQRSESILQISREATHPPFVNMDFHEVDSIPRVTVH 390 (767)
Q Consensus 311 ~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~l~Gkl~p~~kSe~~p~~~~~~~~p~fvn~df~~~~~V~~Lt~~ 390 (767)
...|..+++....+.||.++. .+++.++|+.|+.+|++|+++||++|+++|++++.. +|+.|+++
T Consensus 310 ~~~~~~~v~~~~~~~Ky~~~~-e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~--------------pVkvvVgk 374 (493)
T KOG0190|consen 310 EQLPIRAVILNEDGSKYPLEE-EELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRS--------------PVKVVVGK 374 (493)
T ss_pred ccCCeeEEeeccccccccCcc-ccccHHHHHHHHHHHhcCccccccccCCCCcccccC--------------CeEEEeec
Confidence 566745555556668999874 468889999999999999999999999999988743 28999999
Q ss_pred ccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccC
Q 046627 391 SFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKL 470 (767)
Q Consensus 391 nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~ 470 (767)
||+++| +|. +|+|||.|||||||||+++.|.|++||+.|++..+
T Consensus 375 nfd~iv-~de----------~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~------------------------- 418 (493)
T KOG0190|consen 375 NFDDIV-LDE----------GKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDEN------------------------- 418 (493)
T ss_pred CHHHHh-hcc----------ccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCC-------------------------
Confidence 999999 776 99999999999999999999999999999998543
Q ss_pred cEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCee-EEEEeCCCCHHHHHHHHHHhCC
Q 046627 471 PRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKN-AISFKGDISVADVIKFIADHGN 530 (767)
Q Consensus 471 ~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~-~i~y~G~~t~e~L~~FI~k~~~ 530 (767)
++|++||+|.||++. ..+.+||||+|||+|+|. ++.|.|.|+.++|..||.++++
T Consensus 419 vviAKmDaTaNd~~~-----~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 419 VVIAKMDATANDVPS-----LKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred cEEEEeccccccCcc-----ccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 399999999999886 488899999999999974 9999999999999999999998
No 2
>PRK00228 hypothetical protein; Validated
Probab=100.00 E-value=4.1e-40 Score=332.22 Aligned_cols=153 Identities=26% Similarity=0.378 Sum_probs=132.5
Q ss_pred ccCCCCCcEEEecCCCCCCCCccceEEEEEEeCCCCceeEEEeccCCCCCChhhhhhccccc-------CCCCeecCCCc
Q 046627 606 AHGVVAGSILIATDKLLSVHPFENSKILIVKADQSVGFQGLIFNKHIGWDSLQELEKGLDFL-------KEAPLSFGGPL 678 (767)
Q Consensus 606 ~~~~~~G~lLIA~P~L~~d~~F~rSVVLi~eH~~~~Ga~GlILNrP~~~~~l~~l~~~~~~~-------~~~pv~~GGPV 678 (767)
...+++|+||||+|.| .|++|+|||||||+|++ +||+|||||||++. ++++++++++.. .+.|||+||||
T Consensus 6 ~~~~~~G~lLiA~P~l-~d~~F~rSVIll~eH~~-~Ga~GlIlNrp~~~-~l~~ll~~~~~~~~~~~~~~~~~v~~GGPV 82 (191)
T PRK00228 6 EPMNLQGQLLIAMPDL-QDPNFARSVIYICEHNE-NGAMGLVINRPSEL-DVAEVLPQLDILATPPEIRLDQPVFLGGPV 82 (191)
T ss_pred cCccCCCeEEEeCCCC-CCCCcCccEEEEEEeCC-CCceEEEEcCCCCC-CHHHHHHHhcccccCcccccCCeEEeCCCc
Confidence 4568999999999999 69999999999999998 89999999999995 999999888642 14799999999
Q ss_pred CCCceeEEecccCCCCCCcceecCCEeeccCcccHHHHHHHhcCCCCCccEEEEeecccCChhhHHHHHHcCCeEeccCC
Q 046627 679 IKHRMPLVSLTRRVTKSQYPEIVPGVYFLDQSATVNEIEELKSGNHSIVDYWFFLGFSGWGWDQLFHEIAQGAWTTGEDR 758 (767)
Q Consensus 679 ~~~~~~ll~~~~~~~~~~~~~v~~gl~~gg~~~~~~~l~~i~~g~~~~~~~r~flGYaGW~~GQLe~Ei~~g~W~v~~a~ 758 (767)
+++..+++|..+. .+.++.+|.+|||+++ +.++++.|+.+ ..+.++|||+|||||++||||+||++|+|++++|+
T Consensus 83 ~~~~~~~Lh~~~~-~~~~s~~v~~gl~l~~---s~d~l~~l~~~-~~~~~~~~flGyaGW~~gQLe~Ei~~g~W~v~~a~ 157 (191)
T PRK00228 83 QTDRGFVLHSPRD-GFDSSIRVSDGLVLTT---SRDVLEALATG-PGPEGVLVALGYAGWGAGQLEQEIEENAWLTAPAD 157 (191)
T ss_pred cCCcEEEEEECCC-cCCCceeecCCeEEeC---CHHHHHHHhcC-CCCCcEEEEEEECCCCHHHHHHHHHcCCeEEccCC
Confidence 9966666664422 2447899999999965 57778888777 46799999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 046627 759 MGHLDWPS 766 (767)
Q Consensus 759 ~~~lf~~~ 766 (767)
+++||.+.
T Consensus 158 ~~~lf~~~ 165 (191)
T PRK00228 158 PEILFDTP 165 (191)
T ss_pred HHHhcCCC
Confidence 99999853
No 3
>COG1678 Putative transcriptional regulator [Transcription]
Probab=100.00 E-value=5.5e-40 Score=324.59 Aligned_cols=154 Identities=23% Similarity=0.329 Sum_probs=135.8
Q ss_pred cccCCCCCcEEEecCCCCCCCCccceEEEEEEeCCCCceeEEEeccCCCCCChhhhhhcccccC-----CCCeecCCCcC
Q 046627 605 TAHGVVAGSILIATDKLLSVHPFENSKILIVKADQSVGFQGLIFNKHIGWDSLQELEKGLDFLK-----EAPLSFGGPLI 679 (767)
Q Consensus 605 ~~~~~~~G~lLIA~P~L~~d~~F~rSVVLi~eH~~~~Ga~GlILNrP~~~~~l~~l~~~~~~~~-----~~pv~~GGPV~ 679 (767)
...++++|+||||+|.| .|++|+|||||||||++ +||||||||||++..++.+++..+.... +.|||.||||+
T Consensus 8 ~~~~~l~g~fLiAmP~m-~d~~F~RSVvyiceH~e-~GamGliiNrp~~~~~~~~l~~~~~~~~~~~~~~~~v~~GGPv~ 85 (194)
T COG1678 8 AAQMNLQGHFLVAMPDM-QDPIFARSVVYICEHNE-NGAMGLIINRPSETLTLAELLEKLKLEIKILRLPKPVYLGGPVQ 85 (194)
T ss_pred hhhcccCCcEEEecCCC-CCCccceeEEEEEEeCC-CCcEEEEecCCccccCHHHHHHHhcccccccccCceEEeCCccc
Confidence 45578999999999999 79999999999999999 8999999999999669999988776432 46999999999
Q ss_pred C-CceeEEecccCCCCCCcceecCCEeeccCcccHHHHHHHhcCCCCCccEEEEeecccCChhhHHHHHHcCCeEeccCC
Q 046627 680 K-HRMPLVSLTRRVTKSQYPEIVPGVYFLDQSATVNEIEELKSGNHSIVDYWFFLGFSGWGWDQLFHEIAQGAWTTGEDR 758 (767)
Q Consensus 680 ~-~~~~ll~~~~~~~~~~~~~v~~gl~~gg~~~~~~~l~~i~~g~~~~~~~r~flGYaGW~~GQLe~Ei~~g~W~v~~a~ 758 (767)
. ++|+||. .+......+++|.+|+++ +++.|++++|.+| .+|+++++++|||||++||||+||++|.|+++||+
T Consensus 86 ~~rgfvLh~-~~~~~~~ssl~v~~~~~l---t~s~Dvl~~i~~~-~~p~~~l~~lGYagW~~GQLE~Ei~~n~WL~~pA~ 160 (194)
T COG1678 86 RDRGFVLHS-SDYGAFQSSLRVSDGLAL---TTSLDVLEAIAAG-KGPEKALVALGYAGWAAGQLEEEIEDNDWLTVPAD 160 (194)
T ss_pred ccceEEEEe-CCCCCCcccceecCCEEE---EecHhHHHHHhcc-CCCCceEEEEEecccccchhHHHHhhCCEEEecCC
Confidence 8 6666654 333333467999999999 8889999999998 58899999999999999999999999999999999
Q ss_pred CCCCCCC
Q 046627 759 MGHLDWP 765 (767)
Q Consensus 759 ~~~lf~~ 765 (767)
+++||..
T Consensus 161 ~~~lF~~ 167 (194)
T COG1678 161 PEILFDT 167 (194)
T ss_pred HHHhcCC
Confidence 9999985
No 4
>PF02622 DUF179: Uncharacterized ACR, COG1678; InterPro: IPR003774 This entry describes proteins of unknown function.; PDB: 2DO8_A 2EW0_A 2GS5_A 2HRX_A 2AJ2_A 2HAF_A 2GZO_A.
Probab=100.00 E-value=1.4e-36 Score=299.18 Aligned_cols=142 Identities=30% Similarity=0.501 Sum_probs=119.8
Q ss_pred cCCCCCCCCccceEEEEEEeCCCCceeEEEeccCCCCCChhhhhhcccc-----cCCCCeecCCCcCCCceeEEecccCC
Q 046627 618 TDKLLSVHPFENSKILIVKADQSVGFQGLIFNKHIGWDSLQELEKGLDF-----LKEAPLSFGGPLIKHRMPLVSLTRRV 692 (767)
Q Consensus 618 ~P~L~~d~~F~rSVVLi~eH~~~~Ga~GlILNrP~~~~~l~~l~~~~~~-----~~~~pv~~GGPV~~~~~~ll~~~~~~ 692 (767)
||.| .|++|+|||||||+|++ +||+|||||||++. ++.++++++.. ..++|||+||||.++.++++|..+..
T Consensus 1 ~P~l-~d~~F~~sVVli~~h~~-~Ga~GlILNrp~~~-~l~~~~~~~~~~~~~~~~~~~v~~GGPV~~~~~~~Lh~~~~~ 77 (161)
T PF02622_consen 1 MPSL-NDPNFHRSVVLICEHDE-EGAMGLILNRPTNI-TLSELLEELELLPISAFSDQPVYFGGPVEPDRGFVLHSIPDL 77 (161)
T ss_dssp -TTS-TSTTTTTEEEEEEEEET-TEEEEEESSSEEEE-EHHHHHHHTTCCSSTTCCCSEEEES-SEEEEEEEEEEEC-TT
T ss_pred CCCC-CCCCcCceEEEEEEECC-CCcEEEEecCCCCC-CHHHHHHhhccccccccccCeEEECCCcccCeEEEEEECCCC
Confidence 6999 79999999999999999 89999999999985 99999998873 45789999999999767777766554
Q ss_pred CCCCcceecCCEeeccCcccHHHHHHHhcCCCCCccEEEEeecccCChhhHHHHHHcCCeEeccCCCCCCCCC
Q 046627 693 TKSQYPEIVPGVYFLDQSATVNEIEELKSGNHSIVDYWFFLGFSGWGWDQLFHEIAQGAWTTGEDRMGHLDWP 765 (767)
Q Consensus 693 ~~~~~~~v~~gl~~gg~~~~~~~l~~i~~g~~~~~~~r~flGYaGW~~GQLe~Ei~~g~W~v~~a~~~~lf~~ 765 (767)
...++.+|.+|+|+|++.+.... .|++| ..+.+||||+|||||+|||||+||++|+|++++|++++||..
T Consensus 78 ~~~~s~~v~~gl~~~~~~~~~~~--~i~~~-~~~~~~~~f~GysgW~~gQLe~Ei~~g~W~~~~a~~~~vf~~ 147 (161)
T PF02622_consen 78 EGPGSIEVSPGLYLGGSLDALEA--LIAEG-AGPEDFRFFLGYSGWGPGQLEDEIARGSWLVAPASPDIVFET 147 (161)
T ss_dssp GCSSEEECSSSEEEEESTHHHHH--HHTST-TSCSSEEEEEEEEEECTTHHHHHHHTTTEEEEE--HHHHCTS
T ss_pred CCCCceEEeCCeEEeccHHHHHH--HHhCC-CCCceEEEEEEECCCCHHHHHHHHHcCCEEEeeCCHHHhhCC
Confidence 23578999999999887444443 47888 789999999999999999999999999999999999999985
No 5
>PTZ00102 disulphide isomerase; Provisional
Probab=99.97 E-value=4.3e-30 Score=291.72 Aligned_cols=410 Identities=15% Similarity=0.236 Sum_probs=270.2
Q ss_pred CcccccCCCCcEEEEEecCCCchHhhhhhHHHHHHHHHHHHhhcCCccccccCCCCCCCCccccccccccCCCCCccCch
Q 046627 10 LDTVLPAKKPSILLFVDRSSSSSETRRKSKETLDNFRVLAQQYLIPHQIGQETKDHPGRPSVQANQVLSTSGHPRLKLSP 89 (767)
Q Consensus 10 ~~~~~~~~~~s~~lf~~~~s~~~~~~~~s~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (767)
-+..+-.+++.++.|-. .-=+.++.....+.++|..+...+ .......-+. ..-..
T Consensus 42 f~~~i~~~~~~lv~f~a------~wC~~Ck~~~p~~~~~a~~~~~~~---------~~i~~~~vd~---------~~~~~ 97 (477)
T PTZ00102 42 FDKFITENEIVLVKFYA------PWCGHCKRLAPEYKKAAKMLKEKK---------SEIVLASVDA---------TEEME 97 (477)
T ss_pred HHHHHhcCCcEEEEEEC------CCCHHHHHhhHHHHHHHHHHHhcC---------CcEEEEEEEC---------CCCHH
Confidence 34455667888888873 233456667777777777653211 0111111110 01124
Q ss_pred hhhhcccccceEEEEecCCceeecCcccccCCCCcHHHHHHHHHhhcCCCccchhhhhhcceeccCCccceeccCCCCcc
Q 046627 90 RAQKLKFHDKMSIMVLDEGKHISLDSIATDSQGNSLQEILEYLLQKRKGAKLSSVAKEVGFRLLSDDIDIKIADEPSTSQ 169 (767)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~l~d~~~~~~~~~~~~~~ 169 (767)
++++++++..++++++++|+.+.|. .+.+..+|+.+|-+... ..+..+...--++.+.+...+.++..+....
T Consensus 98 l~~~~~i~~~Pt~~~~~~g~~~~y~------g~~~~~~l~~~l~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (477)
T PTZ00102 98 LAQEFGVRGYPTIKFFNKGNPVNYS------GGRTADGIVSWIKKLTG-PAVTEVESASEIKLIAKKIFVAFYGEYTSKD 170 (477)
T ss_pred HHHhcCCCcccEEEEEECCceEEec------CCCCHHHHHHHHHHhhC-CCceeecCHHHHHHhhccCcEEEEEEeccCC
Confidence 7788999999999999999987432 34677888888877654 3333333322233444555555554443111
Q ss_pred ccc--ccCCCCCCCCccCceeee-cccCCCCCCCCCCCchhhhhcccCCCCCCCCCCccccccccccccceeeeEEeccc
Q 046627 170 TEF--QPNQVSTTPSEEGLITVN-VDLDKDQSPHGASIPAVERKENSKSSDMSSHHDDEQKVSVDTKEQYQKVSVDTKEQ 246 (767)
Q Consensus 170 ~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~fi~sn~ 246 (767)
.+. ...+.+..-.+. ..--. .+.+.... . -| ..++.+.. ... +. ..+ .+..||..+.
T Consensus 171 ~~~~~~f~~~a~~~~~~-~~F~~~~~~~~~~~--~-~~----~~~~~~~~-~~~--~~-------~~~--~l~~fI~~~~ 230 (477)
T PTZ00102 171 SELYKKFEEVADKHREH-AKFFVKKHEGKNKI--Y-VL----HKDEEGVE-LFM--GK-------TKE--ELEEFVSTES 230 (477)
T ss_pred cHHHHHHHHHHHhcccc-ceEEEEcCCCCCcE--E-EE----ecCCCCcc-cCC--CC-------CHH--HHHHHHHHcC
Confidence 111 000111000000 00000 00000000 0 00 00000000 000 00 011 2568999999
Q ss_pred ccce-----echHHhhcCCccEEEEeecCCcChhhh-cccCCchhhhhcCCceEEEE--eCC-h--hhhhhhcCCCCCcE
Q 046627 247 LIPE-----ASDQYYLGHDLTTAKDVKVGEKSSSQI-SMSGDPQLEFQGFRGSFFFN--DGN-Y--RLLGALTGGSTIPS 315 (767)
Q Consensus 247 lPlV-----etf~~~~~~~~p~~~~f~~~~e~s~~~-e~l~~~~~~A~~fkgk~~fv--D~~-~--~~l~~~~~~~~~P~ 315 (767)
.|+| ++|..|+..++++++++. ..++..++ +.+ +++|++|++++.|+ |+. + ++++.|+ ...+|+
T Consensus 231 ~P~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~A~~~~~~~~f~~vd~~~~~~~~~~~~g-i~~~P~ 305 (477)
T PTZ00102 231 FPLFAEINAENYRRYISSGKDLVWFCG-TTEDYDKYKSVV---RKVARKLREKYAFVWLDTEQFGSHAKEHLL-IEEFPG 305 (477)
T ss_pred CCceeecCccchHHHhcCCccEEEEec-CHHHHHHHHHHH---HHHHHhccCceEEEEEechhcchhHHHhcC-cccCce
Confidence 9999 778899999998876554 34445556 666 89999999998885 765 2 3566664 456999
Q ss_pred EEEEcCCCCceeecCCc--cCCCHHHHHHHHHHHhcCCcCCCcccccccccccCCCCCCccccCccccCceeeecccccc
Q 046627 316 LAIVDPISNQHYVASKE--ATFNYSSMADFLHGFLNGTLLPYQRSESILQISREATHPPFVNMDFHEVDSIPRVTVHSFS 393 (767)
Q Consensus 316 l~I~d~~~~~kY~~~~~--~~~t~e~L~~Fi~~~l~Gkl~p~~kSe~~p~~~~~~~~p~fvn~df~~~~~V~~Lt~~nF~ 393 (767)
++|.+.. .+|.++.. ..++.++|.+|+.++++|+++|+++|+++|+.... .|+.|++++|+
T Consensus 306 ~~i~~~~--~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~---------------~v~~l~~~~f~ 368 (477)
T PTZ00102 306 LAYQSPA--GRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDG---------------PVKVVVGNTFE 368 (477)
T ss_pred EEEEcCC--cccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCC---------------CeEEecccchH
Confidence 9888743 37877653 34789999999999999999999999999865432 38999999999
Q ss_pred cccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEE
Q 046627 394 DLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRI 473 (767)
Q Consensus 394 e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vI 473 (767)
+.| .+. +++|||.||||||++|+.+.|.|+++++.+++... +.+
T Consensus 369 ~~v-~~~----------~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~-------------------------v~~ 412 (477)
T PTZ00102 369 EIV-FKS----------DKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDS-------------------------IIV 412 (477)
T ss_pred HHH-hcC----------CCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCc-------------------------EEE
Confidence 998 554 89999999999999999999999999999875322 278
Q ss_pred EEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCC
Q 046627 474 YLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNN 531 (767)
Q Consensus 474 a~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~ 531 (767)
+.+||+.|+.. +..++++++||+++|++|++.+..|.|.++.++|.+||++++..
T Consensus 413 ~~id~~~~~~~---~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 413 AKMNGTANETP---LEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred EEEECCCCccc---hhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 99999998753 45799999999999999888788999999999999999999865
No 6
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.95 E-value=1.2e-27 Score=269.13 Aligned_cols=237 Identities=26% Similarity=0.396 Sum_probs=194.3
Q ss_pred eeeEEecccccce-----echHHhhcCCccEEEEeecCCcCh---hhh-cccCCchhhhhcCCc-eEEEE--eCC--hhh
Q 046627 238 KVSVDTKEQLIPE-----ASDQYYLGHDLTTAKDVKVGEKSS---SQI-SMSGDPQLEFQGFRG-SFFFN--DGN--YRL 303 (767)
Q Consensus 238 ~t~fi~sn~lPlV-----etf~~~~~~~~p~~~~f~~~~e~s---~~~-e~l~~~~~~A~~fkg-k~~fv--D~~--~~~ 303 (767)
+..||..+..|+| +++..++..+ |...+|+...+.. .++ +.+ +++|++|+| ++.|+ |+. .++
T Consensus 207 l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~i~f~~~d~~~~~~~ 282 (462)
T TIGR01130 207 LEKFIRAESLPLVGEFTQETAAKYFESG-PLVVLYYNVDESLDPFEELRNRF---LEAAKKFRGKFVNFAVADEEDFGRE 282 (462)
T ss_pred HHHHHHHcCCCceEeeCCcchhhHhCCC-CceeEEEEecCCchHHHHHHHHH---HHHHHHCCCCeEEEEEecHHHhHHH
Confidence 6689999999999 6677888887 7777766533332 444 666 899999997 77775 553 466
Q ss_pred hhhhcC-CCCCcEEEEEcCCCCceeecCCccCCCHHHHHHHHHHHhcCCcCCCcccccccccccCCCCCCccccCccccC
Q 046627 304 LGALTG-GSTIPSLAIVDPISNQHYVASKEATFNYSSMADFLHGFLNGTLLPYQRSESILQISREATHPPFVNMDFHEVD 382 (767)
Q Consensus 304 l~~~~~-~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~l~Gkl~p~~kSe~~p~~~~~~~~p~fvn~df~~~~ 382 (767)
++.|+. ...+|+++|++.....+|.+.+. .++.++|.+|++++++|+++|+++|+++|+....
T Consensus 283 ~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~-~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~--------------- 346 (462)
T TIGR01130 283 LEYFGLKAEKFPAVAIQDLEGNKKYPMDQE-EFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEG--------------- 346 (462)
T ss_pred HHHcCCCccCCceEEEEeCCcccccCCCcC-CCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCC---------------
Confidence 777743 34799999999765467888654 7999999999999999999999999999876322
Q ss_pred ceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhH
Q 046627 383 SIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEY 462 (767)
Q Consensus 383 ~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~ 462 (767)
.|..|++++|++++ .+. +++|||.||||||++|+.+.|.++++++.+++..
T Consensus 347 ~v~~l~~~~f~~~v-~~~----------~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~------------------ 397 (462)
T TIGR01130 347 PVKVLVGKNFDEIV-LDE----------TKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAE------------------ 397 (462)
T ss_pred ccEEeeCcCHHHHh-ccC----------CCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCC------------------
Confidence 37899999999999 554 8999999999999999999999999999998621
Q ss_pred HhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCe-eEEEEeCCCCHHHHHHHHHHhCCCCCc
Q 046627 463 LKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERK-NAISFKGDISVADVIKFIADHGNNSHD 534 (767)
Q Consensus 463 v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK-~~i~y~G~~t~e~L~~FI~k~~~~~~~ 534 (767)
..+.++.+||+.|+++. ++|.++||++||++|++ .+..|.|.++.+.|.+||.++++....
T Consensus 398 ------~~i~~~~id~~~n~~~~-----~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~ 459 (462)
T TIGR01130 398 ------SDVVIAKMDATANDVPP-----FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPLE 459 (462)
T ss_pred ------CcEEEEEEECCCCccCC-----CCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCCc
Confidence 01289999999997643 79999999999998887 578999999999999999999977653
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.75 E-value=4.9e-18 Score=158.18 Aligned_cols=103 Identities=13% Similarity=0.184 Sum_probs=87.0
Q ss_pred Cceeeecccccccccc-cccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchh
Q 046627 382 DSIPRVTVHSFSDLVG-LNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNG 460 (767)
Q Consensus 382 ~~V~~Lt~~nF~e~V~-~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~ 460 (767)
..|.+|+..||++.+. .+ .++.+||.||||||+||+.++|.|+++++.+++..
T Consensus 9 ~~v~~l~~~~f~~~~~v~~----------~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v---------------- 62 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRT----------DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQV---------------- 62 (113)
T ss_pred CCeEEechhhhHHHHhccc----------CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCe----------------
Confidence 4589999999999741 22 38999999999999999999999999999997642
Q ss_pred hHHhhccccCcEEEEecCCcccchHHHh-hcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHH
Q 046627 461 EYLKNINFKLPRIYLMDCTLNDCSLILK-SMTQREVYPALVLFPAERKNAISFKGDISVADVIKFI 525 (767)
Q Consensus 461 ~~v~~~~~~~~vIa~ID~t~ND~~~~L~-~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI 525 (767)
.+++|||+.+. .++ .+|+|.+|||++||. +|+.+..|.|.++.+.|+.|+
T Consensus 63 -----------~~~~Vd~d~~~---~l~~~~~~I~~~PTl~lf~-~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 63 -----------LFVAINCWWPQ---GKCRKQKHFFYFPVIHLYY-RSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred -----------EEEEEECCCCh---HHHHHhcCCcccCEEEEEE-CCccceEEeCCCCHHHHHhhC
Confidence 78999998774 345 479999999999995 555688999999999999873
No 8
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.74 E-value=7.7e-18 Score=152.68 Aligned_cols=101 Identities=30% Similarity=0.568 Sum_probs=88.4
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHH
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYL 463 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v 463 (767)
|..++..+|++.+ .+. +++++|.|||+||++|+++.|.|+++++.+++..
T Consensus 3 v~~l~~~~f~~~i-~~~----------~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~------------------- 52 (104)
T cd03004 3 VITLTPEDFPELV-LNR----------KEPWLVDFYAPWCGPCQALLPELRKAARALKGKV------------------- 52 (104)
T ss_pred ceEcCHHHHHHHH-hcC----------CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCc-------------------
Confidence 6788999999998 443 7799999999999999999999999999986532
Q ss_pred hhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCC-HHHHHHHH
Q 046627 464 KNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDIS-VADVIKFI 525 (767)
Q Consensus 464 ~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t-~e~L~~FI 525 (767)
.++++||+.+. .++..++|.++||+++|+.|++.+..|.|.++ .++|.+||
T Consensus 53 --------~~~~vd~~~~~---~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 53 --------KVGSVDCQKYE---SLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred --------EEEEEECCchH---HHHHHcCCCcccEEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 78899998763 46788999999999999888678899999987 99999885
No 9
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.72 E-value=4.6e-17 Score=145.64 Aligned_cols=103 Identities=21% Similarity=0.460 Sum_probs=90.0
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHH
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYL 463 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v 463 (767)
|..+|.++|++.+ .+. ++++||.||++||++|+.+.|.|+++++.+++..
T Consensus 1 v~~lt~~~f~~~i-~~~----------~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v------------------- 50 (103)
T PF00085_consen 1 VIVLTDENFEKFI-NES----------DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNV------------------- 50 (103)
T ss_dssp SEEESTTTHHHHH-TTT----------SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTS-------------------
T ss_pred CEECCHHHHHHHH-Hcc----------CCCEEEEEeCCCCCccccccceeccccccccccc-------------------
Confidence 4689999999999 432 8999999999999999999999999999998632
Q ss_pred hhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHh
Q 046627 464 KNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADH 528 (767)
Q Consensus 464 ~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~ 528 (767)
.++.+||+.+ ..++.+|+|.++||+++|.. |+...+|.|.++.+.|.+||++|
T Consensus 51 --------~~~~vd~~~~---~~l~~~~~v~~~Pt~~~~~~-g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 51 --------KFAKVDCDEN---KELCKKYGVKSVPTIIFFKN-GKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp --------EEEEEETTTS---HHHHHHTTCSSSSEEEEEET-TEEEEEEESSSSHHHHHHHHHHH
T ss_pred --------ccchhhhhcc---chhhhccCCCCCCEEEEEEC-CcEEEEEECCCCHHHHHHHHHcC
Confidence 7899999877 34788999999999999954 45566999999999999999987
No 10
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.71 E-value=2.6e-17 Score=148.78 Aligned_cols=98 Identities=28% Similarity=0.451 Sum_probs=85.3
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHH
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYL 463 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v 463 (767)
|..|+.++|++.+ .+ +++++|.||||||++|+++.|.|+++++.+++..
T Consensus 3 ~~~l~~~~f~~~v-~~-----------~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~------------------- 51 (101)
T cd03003 3 IVTLDRGDFDAAV-NS-----------GEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVI------------------- 51 (101)
T ss_pred eEEcCHhhHHHHh-cC-----------CCeEEEEEECCCChHHHHhHHHHHHHHHHhcCce-------------------
Confidence 7889999999988 22 6899999999999999999999999999997642
Q ss_pred hhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHH
Q 046627 464 KNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKF 524 (767)
Q Consensus 464 ~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~F 524 (767)
.++++||+.+. .++.+++|.+|||+++|+.| +.+..|.|.++.+.|.+|
T Consensus 52 --------~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~g-~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 52 --------RIGAVNCGDDR---MLCRSQGVNSYPSLYVFPSG-MNPEKYYGDRSKESLVKF 100 (101)
T ss_pred --------EEEEEeCCccH---HHHHHcCCCccCEEEEEcCC-CCcccCCCCCCHHHHHhh
Confidence 78899998763 46788999999999999654 557889999999999987
No 11
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.71 E-value=2.8e-17 Score=150.49 Aligned_cols=106 Identities=23% Similarity=0.349 Sum_probs=87.8
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHH
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYL 463 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v 463 (767)
|..+++++|++.+. .++++||.||||||++|+++.|.|+++++.+++... .
T Consensus 3 v~~l~~~~f~~~i~------------~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~---------------~-- 53 (108)
T cd02996 3 IVSLTSGNIDDILQ------------SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFP---------------D-- 53 (108)
T ss_pred eEEcCHhhHHHHHh------------cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccC---------------C--
Confidence 78899999999772 278999999999999999999999999998864310 0
Q ss_pred hhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHH
Q 046627 464 KNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFI 525 (767)
Q Consensus 464 ~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI 525 (767)
...+.++++||+.+. .++.+|+|.+|||+++|+.|......|.|.++.++|.+||
T Consensus 54 ----~~~~~~~~vd~d~~~---~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 54 ----AGKVVWGKVDCDKES---DIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred ----CCcEEEEEEECCCCH---HHHHhCCCCcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 011378999999873 4788999999999999976654568899999999999986
No 12
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.70 E-value=4.4e-17 Score=146.41 Aligned_cols=102 Identities=34% Similarity=0.645 Sum_probs=87.6
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHH
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYL 463 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v 463 (767)
|..|++++|++.+ .+. +++++|+|||+||++|+.+.|.|+++++.+++...
T Consensus 2 v~~l~~~~f~~~i-~~~----------~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~------------------ 52 (104)
T cd02995 2 VKVVVGKNFDEVV-LDS----------DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDN------------------ 52 (104)
T ss_pred eEEEchhhhHHHH-hCC----------CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCC------------------
Confidence 7899999999998 443 78999999999999999999999999999976322
Q ss_pred hhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCC-eeEEEEeCCCCHHHHHHHH
Q 046627 464 KNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAER-KNAISFKGDISVADVIKFI 525 (767)
Q Consensus 464 ~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~agg-K~~i~y~G~~t~e~L~~FI 525 (767)
+.++++||+.+++ +..+++.++||+++|++|+ .....|.|.++.++|.+||
T Consensus 53 -------~~~~~id~~~~~~----~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 53 -------VVIAKMDATANDV----PSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred -------EEEEEEeCcchhh----hhhccCCCCCEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 2789999998854 3467889999999998877 3578899999999999986
No 13
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.69 E-value=6.1e-17 Score=147.52 Aligned_cols=104 Identities=20% Similarity=0.475 Sum_probs=87.9
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHH
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYL 463 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v 463 (767)
|..|+.++|++.+ .+. ++++||.|||+||++|+++.|.|+++++.+++..
T Consensus 2 v~~l~~~~~~~~i-~~~----------~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~------------------- 51 (109)
T cd03002 2 VYELTPKNFDKVV-HNT----------NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLV------------------- 51 (109)
T ss_pred eEEcchhhHHHHH-hcC----------CCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCc-------------------
Confidence 6789999999999 443 8889999999999999999999999999987532
Q ss_pred hhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCC----eeEEEEeCCCCHHHHHHHHH
Q 046627 464 KNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAER----KNAISFKGDISVADVIKFIA 526 (767)
Q Consensus 464 ~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~agg----K~~i~y~G~~t~e~L~~FI~ 526 (767)
.++.+||+..+.. .+++.|+|.++||+++|++++ .....|.|.++.++|.+||.
T Consensus 52 --------~~~~v~~~~~~~~-~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 52 --------QVAAVDCDEDKNK-PLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred --------eEEEEecCccccH-HHHHHcCCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 6677888763333 467789999999999998886 35788999999999999983
No 14
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.6e-17 Score=181.75 Aligned_cols=112 Identities=21% Similarity=0.364 Sum_probs=98.9
Q ss_pred ceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhH
Q 046627 383 SIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEY 462 (767)
Q Consensus 383 ~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~ 462 (767)
.|.+|+.+||++.+ .. +..+||.||||||+||++++|.|++.|+.++....
T Consensus 26 ~Vl~Lt~dnf~~~i-~~-----------~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s----------------- 76 (493)
T KOG0190|consen 26 DVLVLTKDNFKETI-NG-----------HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGS----------------- 76 (493)
T ss_pred ceEEEecccHHHHh-cc-----------CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCC-----------------
Confidence 48999999999999 22 78899999999999999999999999999987521
Q ss_pred HhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCCCCc
Q 046627 463 LKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNNSHD 534 (767)
Q Consensus 463 v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~~~~ 534 (767)
.+.+++|||+.+ ..+|++|+|+||||+.+|..|.. +..|+|.|+.+.++.|+.+..+....
T Consensus 77 -------~i~LakVDat~~---~~~~~~y~v~gyPTlkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~gPa~~ 137 (493)
T KOG0190|consen 77 -------PVKLAKVDATEE---SDLASKYEVRGYPTLKIFRNGRS-AQDYNGPREADGIVKWLKKQSGPASK 137 (493)
T ss_pred -------CceeEEeecchh---hhhHhhhcCCCCCeEEEEecCCc-ceeccCcccHHHHHHHHHhccCCCce
Confidence 238999999998 56899999999999999966655 88999999999999999999887665
No 15
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.67 E-value=3.3e-16 Score=141.22 Aligned_cols=99 Identities=17% Similarity=0.255 Sum_probs=82.6
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHH
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYL 463 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v 463 (767)
|..|+.++|++++. ++ +||.|||+||++|+++.|.|+++++.++.. .
T Consensus 3 v~~l~~~~f~~~~~-------------~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~------------------ 49 (101)
T cd02994 3 VVELTDSNWTLVLE-------------GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL-G------------------ 49 (101)
T ss_pred eEEcChhhHHHHhC-------------CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC-C------------------
Confidence 78899999998772 33 799999999999999999999999877532 1
Q ss_pred hhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHH
Q 046627 464 KNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIAD 527 (767)
Q Consensus 464 ~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k 527 (767)
+.++++||+.+. .++.+|+|.++||+++|+.| + ...|.|.++.++|.+||++
T Consensus 50 -------v~~~~vd~~~~~---~~~~~~~i~~~Pt~~~~~~g-~-~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 50 -------INVAKVDVTQEP---GLSGRFFVTALPTIYHAKDG-V-FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred -------eEEEEEEccCCH---hHHHHcCCcccCEEEEeCCC-C-EEEecCCCCHHHHHHHHhC
Confidence 278899998763 36778999999999999654 4 4789999999999999974
No 16
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.67 E-value=1.8e-16 Score=145.90 Aligned_cols=105 Identities=18% Similarity=0.435 Sum_probs=86.8
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHH
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYL 463 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v 463 (767)
|+.++..+|+.++ ... ..++++||.|||+||++|+++.|.|+++++.+++..
T Consensus 3 v~~~~~~~~~~~~-~~~--------~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~------------------- 54 (109)
T cd02993 3 VVTLSRAEIEALA-KGE--------RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN------------------- 54 (109)
T ss_pred ceeccHHHHHHHH-hhh--------hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCC-------------------
Confidence 7899999999998 221 137999999999999999999999999999998531
Q ss_pred hhccccCcEEEEecCCcccchHHHhh-cCCCCcccEEEEEeCCCeeEEEEeCC-CCHHHHHHHH
Q 046627 464 KNINFKLPRIYLMDCTLNDCSLILKS-MTQREVYPALVLFPAERKNAISFKGD-ISVADVIKFI 525 (767)
Q Consensus 464 ~~~~~~~~vIa~ID~t~ND~~~~L~~-~~~I~gyPTi~Lf~aggK~~i~y~G~-~t~e~L~~FI 525 (767)
..++.+||+.++. .++. .++|++|||++||+++++.+..|.|. ++.++|+.||
T Consensus 55 -------~~~~~vd~d~~~~--~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 55 -------VKVAKFNADGEQR--EFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred -------eEEEEEECCccch--hhHHhhcCCCcCCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 1678889887322 2343 58999999999999888888999995 8999999986
No 17
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.66 E-value=4.6e-16 Score=139.92 Aligned_cols=101 Identities=20% Similarity=0.451 Sum_probs=87.4
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHH
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYL 463 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v 463 (767)
|..++..+|++.+ .+. +++++|.|||+||++|+++.|.|.++++.+++..
T Consensus 2 v~~l~~~~~~~~i-~~~----------~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~------------------- 51 (103)
T cd03001 2 VVELTDSNFDKKV-LNS----------DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIV------------------- 51 (103)
T ss_pred eEEcCHHhHHHHH-hcC----------CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCc-------------------
Confidence 6788999999988 443 7789999999999999999999999999987532
Q ss_pred hhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHH
Q 046627 464 KNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFI 525 (767)
Q Consensus 464 ~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI 525 (767)
.++.+||+.+. .++++|+|.++||+++|+.+.+....|.|.++.++|.+|+
T Consensus 52 --------~~~~id~~~~~---~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 52 --------KVGAVDADVHQ---SLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred --------eEEEEECcchH---HHHHHCCCCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 67888988763 4677899999999999987766788999999999999996
No 18
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.2e-15 Score=166.69 Aligned_cols=212 Identities=18% Similarity=0.281 Sum_probs=159.4
Q ss_pred echHHhhcCCccEEEEeecCCcC-hhhh-cccCCchhhhhcCCceEEEE--eCC--hhhhhhhcCCCCCcEEEEEcCCCC
Q 046627 251 ASDQYYLGHDLTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRGSFFFN--DGN--YRLLGALTGGSTIPSLAIVDPISN 324 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkgk~~fv--D~~--~~~l~~~~~~~~~P~l~I~d~~~~ 324 (767)
..+......+.+.++.|+++|-. ...+ ..+ ++++..+++++.+. |++ ..+.+.+ +..++|+++++.+. .
T Consensus 38 ~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~---~~~~~~l~~~~~~~~vd~~~~~~~~~~y-~i~gfPtl~~f~~~-~ 112 (383)
T KOG0191|consen 38 SFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTY---KKLAKALKGKVKIGAVDCDEHKDLCEKY-GIQGFPTLKVFRPG-K 112 (383)
T ss_pred ccHHHhhccCCceEEEEECCCCcchhhhchHH---HHHHHHhcCceEEEEeCchhhHHHHHhc-CCccCcEEEEEcCC-C
Confidence 34445666777777777775522 2223 333 77889999977774 654 5666766 67899999999987 3
Q ss_pred ceeecCCccCCCHHHHHHHHHHHhcCCcCCCcccccccccccCCCCCCccccCccccCceeeecccccccccccccCCcc
Q 046627 325 QHYVASKEATFNYSSMADFLHGFLNGTLLPYQRSESILQISREATHPPFVNMDFHEVDSIPRVTVHSFSDLVGLNQSDNE 404 (767)
Q Consensus 325 ~kY~~~~~~~~t~e~L~~Fi~~~l~Gkl~p~~kSe~~p~~~~~~~~p~fvn~df~~~~~V~~Lt~~nF~e~V~~d~~~~~ 404 (767)
..+.+. ...+.+.+.+|+...++..+.-.... .|..++..+|++.+ .+.
T Consensus 113 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~v~~l~~~~~~~~~-~~~---- 161 (383)
T KOG0191|consen 113 KPIDYS--GPRNAESLAEFLIKELEPSVKKLVEG------------------------EVFELTKDNFDETV-KDS---- 161 (383)
T ss_pred ceeecc--CcccHHHHHHHHHHhhccccccccCC------------------------ceEEccccchhhhh-hcc----
Confidence 344443 37899999999999765432211100 27789999999999 554
Q ss_pred cccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccch
Q 046627 405 NAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCS 484 (767)
Q Consensus 405 ~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~ 484 (767)
+.++||.||||||+||++++|.|+++++.++... .+.++.+||+.+
T Consensus 162 ------~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~-------------------------~v~~~~~d~~~~--- 207 (383)
T KOG0191|consen 162 ------DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKE-------------------------NVELGKIDATVH--- 207 (383)
T ss_pred ------CcceEEEEeccccHHhhhcChHHHHHHHHhccCc-------------------------ceEEEeeccchH---
Confidence 8899999999999999999999999999887422 137889999833
Q ss_pred HHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCCC
Q 046627 485 LILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNNS 532 (767)
Q Consensus 485 ~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~~ 532 (767)
..++..++|.+|||+++|+++.+....|.|.|+.+.++.|+++.....
T Consensus 208 ~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 208 KSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred HHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 356778999999999999887764566789999999999999987765
No 19
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.64 E-value=6.4e-16 Score=138.74 Aligned_cols=101 Identities=24% Similarity=0.449 Sum_probs=84.1
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHH
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYL 463 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v 463 (767)
|..|++++|++.+ . ++.+||.|||+||++|+.+.|.|+++++.+++...
T Consensus 2 ~~~l~~~~f~~~~-~------------~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~------------------ 50 (102)
T cd03005 2 VLELTEDNFDHHI-A------------EGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENP------------------ 50 (102)
T ss_pred eeECCHHHHHHHh-h------------cCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCC------------------
Confidence 6788999999999 2 33599999999999999999999999999976210
Q ss_pred hhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHH
Q 046627 464 KNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFI 525 (767)
Q Consensus 464 ~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI 525 (767)
...++.+||+.+. .+++.|+|.++||+++|+.| +....|.|.++.++|.+||
T Consensus 51 ------~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~g-~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 51 ------SVKIAKVDCTQHR---ELCSEFQVRGYPTLLLFKDG-EKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred ------cEEEEEEECCCCh---hhHhhcCCCcCCEEEEEeCC-CeeeEeeCCCCHHHHHhhC
Confidence 1278899998764 46778999999999999654 5677899999999999885
No 20
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.9e-16 Score=149.39 Aligned_cols=105 Identities=20% Similarity=0.388 Sum_probs=90.4
Q ss_pred ceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhH
Q 046627 383 SIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEY 462 (767)
Q Consensus 383 ~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~ 462 (767)
.+..++..+|++.| ++. +.+|||+|||+||++|+.+.|.+++++..|++..
T Consensus 44 ~~~~~s~~~~~~~V-i~S----------~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~------------------ 94 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKV-INS----------DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKF------------------ 94 (150)
T ss_pred cccccCHHHHHHHH-Hcc----------CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeE------------------
Confidence 36778889999999 664 9999999999999999999999999999998754
Q ss_pred HhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhC
Q 046627 463 LKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 463 v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~ 529 (767)
.+|++|.+.+ ..|+..|+|..+||+++| +||+...++.|..+.+.|.++|++..
T Consensus 95 ---------k~~kvdtD~~---~ela~~Y~I~avPtvlvf-knGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 95 ---------KLYKVDTDEH---PELAEDYEISAVPTVLVF-KNGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred ---------EEEEEccccc---cchHhhcceeeeeEEEEE-ECCEEeeeecccCCHHHHHHHHHHHh
Confidence 6788887665 235668999999999999 56666788999999999999999864
No 21
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.64 E-value=7.1e-16 Score=140.31 Aligned_cols=83 Identities=18% Similarity=0.366 Sum_probs=70.9
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCC-cccchHHHh
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCT-LNDCSLILK 488 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t-~ND~~~~L~ 488 (767)
.++.|||.|||+||++|++++|.|+++++.+++ . .++.+|++ .+ ..++
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~---------------------------~~~~vd~~~~~---~~l~ 65 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-I---------------------------RHLAIEESSIK---PSLL 65 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-C---------------------------ceEEEECCCCC---HHHH
Confidence 499999999999999999999999999999864 2 45567776 33 2467
Q ss_pred hcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHH
Q 046627 489 SMTQREVYPALVLFPAERKNAISFKGDISVADVIKFI 525 (767)
Q Consensus 489 ~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI 525 (767)
..|+|.++||+++|++| ...+|.|.++.+.|.+||
T Consensus 66 ~~~~V~~~PT~~lf~~g--~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 66 SRYGVVGFPTILLFNST--PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred HhcCCeecCEEEEEcCC--ceeEecCCCCHHHHHhhC
Confidence 78999999999999766 678999999999999986
No 22
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.63 E-value=1.2e-15 Score=143.58 Aligned_cols=104 Identities=13% Similarity=0.184 Sum_probs=88.0
Q ss_pred CceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChh--hH--HHHHHHHHHHHHH--ccCceeeeccccCCc
Q 046627 382 DSIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGF--CQ--RMELVVREVFRAV--KGYMKSLKNGYKNGQ 455 (767)
Q Consensus 382 ~~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~--Ck--~~~P~leeLak~f--k~~~~iI~V~~d~~~ 455 (767)
+.|..||.+||++.| .+. +.++||+|||+||++ |+ .+.|.+.++|..+ .+.
T Consensus 9 ~~v~~lt~~nF~~~v-~~~----------~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~------------ 65 (120)
T cd03065 9 DRVIDLNEKNYKQVL-KKY----------DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKG------------ 65 (120)
T ss_pred cceeeCChhhHHHHH-HhC----------CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCC------------
Confidence 358899999999999 443 889999999999976 99 8899999999988 443
Q ss_pred ccchhhHHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHh
Q 046627 456 RDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADH 528 (767)
Q Consensus 456 ~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~ 528 (767)
+.++++|++.| ..|+++|+|.++||+++|.. |+. +.|.|.++.+.|.+||++.
T Consensus 66 ---------------v~~~kVD~d~~---~~La~~~~I~~iPTl~lfk~-G~~-v~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 66 ---------------IGFGLVDSKKD---AKVAKKLGLDEEDSIYVFKD-DEV-IEYDGEFAADTLVEFLLDL 118 (120)
T ss_pred ---------------CEEEEEeCCCC---HHHHHHcCCccccEEEEEEC-CEE-EEeeCCCCHHHHHHHHHHH
Confidence 28899999987 35788999999999999965 453 4599999999999999864
No 23
>PRK09381 trxA thioredoxin; Provisional
Probab=99.62 E-value=3e-15 Score=137.03 Aligned_cols=106 Identities=23% Similarity=0.367 Sum_probs=90.1
Q ss_pred CceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhh
Q 046627 382 DSIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGE 461 (767)
Q Consensus 382 ~~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~ 461 (767)
+.|..+++.+|.+.+ ++. +++++|+||+|||++|+.+.|.|+++++.+.+..
T Consensus 3 ~~v~~~~~~~~~~~v-~~~----------~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~----------------- 54 (109)
T PRK09381 3 DKIIHLTDDSFDTDV-LKA----------DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKL----------------- 54 (109)
T ss_pred CcceeeChhhHHHHH-hcC----------CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCc-----------------
Confidence 358899999999988 543 8899999999999999999999999999997642
Q ss_pred HHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhC
Q 046627 462 YLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 462 ~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~ 529 (767)
.++.+|++.+. .++++|+|.++||+++|+ +|+....+.|..+.+.|..+|.+++
T Consensus 55 ----------~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 55 ----------TVAKLNIDQNP---GTAPKYGIRGIPTLLLFK-NGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred ----------EEEEEECCCCh---hHHHhCCCCcCCEEEEEe-CCeEEEEecCCCCHHHHHHHHHHhc
Confidence 67788887663 356689999999999995 5666778899999999999999875
No 24
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.62 E-value=1.6e-15 Score=136.33 Aligned_cols=103 Identities=22% Similarity=0.423 Sum_probs=87.6
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHH
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYL 463 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v 463 (767)
|..|++++|++.+ .+ .+++++|.|||+||++|+++.|.|+++++.++....
T Consensus 2 ~~~l~~~~~~~~~-~~----------~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~------------------ 52 (105)
T cd02998 2 VVELTDSNFDKVV-GD----------DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDD------------------ 52 (105)
T ss_pred eEEcchhcHHHHh-cC----------CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCC------------------
Confidence 5788899999987 33 277999999999999999999999999999873222
Q ss_pred hhccccCcEEEEecCCc-ccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHH
Q 046627 464 KNINFKLPRIYLMDCTL-NDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFI 525 (767)
Q Consensus 464 ~~~~~~~~vIa~ID~t~-ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI 525 (767)
..++.+||.. + ..++.+++|.++||+++|+.+++....|.|.++.+.|.+||
T Consensus 53 -------~~~~~id~~~~~---~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 53 -------VVIAKVDADEAN---KDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred -------EEEEEEECCCcc---hhhHHhCCCCCcCEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 2788899987 4 24677899999999999988877788999999999999986
No 25
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.62 E-value=2.2e-15 Score=134.42 Aligned_cols=85 Identities=13% Similarity=0.214 Sum_probs=74.3
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
++++||+|||+||++|+++.|.++++++.+++.. .++++|++.+. .++.+
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~---------------------------~~~~vd~~~~~---~l~~~ 61 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQF---------------------------VLAKVNCDAQP---QIAQQ 61 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcE---------------------------EEEEEeccCCH---HHHHH
Confidence 7899999999999999999999999999987532 67888988763 46778
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHH
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADVIKFIA 526 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~ 526 (767)
|+|.++||+++|+ +|+....|.|.++.++|..||+
T Consensus 62 ~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 62 FGVQALPTVYLFA-AGQPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred cCCCCCCEEEEEe-CCEEeeeecCCCCHHHHHHHhC
Confidence 9999999999997 6666778999999999999874
No 26
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.61 E-value=1e-15 Score=142.84 Aligned_cols=103 Identities=13% Similarity=0.216 Sum_probs=82.5
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEc--CcCh---hhHHHHHHHHHHHHHHccCceeeeccccCCcccc
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSS--SWCG---FCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDL 458 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyA--pWCg---~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~ 458 (767)
+..|+..||++.|. .++.+||.||| |||+ ||++++|.+.+.+..
T Consensus 3 ~v~L~~~nF~~~v~------------~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~------------------- 51 (116)
T cd03007 3 CVDLDTVTFYKVIP------------KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD------------------- 51 (116)
T ss_pred eeECChhhHHHHHh------------cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc-------------------
Confidence 67899999999882 27889999999 9999 888877777655431
Q ss_pred hhhHHhhccccCcEEEEecCCcc-c-chHHHhhcCCCC--cccEEEEEeCCC-eeEEEEeCC-CCHHHHHHHHHHhC
Q 046627 459 NGEYLKNINFKLPRIYLMDCTLN-D-CSLILKSMTQRE--VYPALVLFPAER-KNAISFKGD-ISVADVIKFIADHG 529 (767)
Q Consensus 459 ~~~~v~~~~~~~~vIa~ID~t~N-D-~~~~L~~~~~I~--gyPTi~Lf~agg-K~~i~y~G~-~t~e~L~~FI~k~~ 529 (767)
+++++|||+.. + ....||++|+|+ +|||++||+.|+ ..++.|.|. |+.++|++||++++
T Consensus 52 ------------v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~~ 116 (116)
T cd03007 52 ------------LLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGNT 116 (116)
T ss_pred ------------eEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhcC
Confidence 28999999420 0 013589999999 999999998774 357899996 99999999999873
No 27
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.61 E-value=2.6e-15 Score=134.25 Aligned_cols=102 Identities=25% Similarity=0.551 Sum_probs=86.8
Q ss_pred ecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhc
Q 046627 387 VTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNI 466 (767)
Q Consensus 387 Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~ 466 (767)
|++++|++.+ . .++.++|.||++||++|+.+.|.|+++++.+++...
T Consensus 1 l~~~~~~~~~-~-----------~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~--------------------- 47 (102)
T TIGR01126 1 LTASNFDDIV-L-----------SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPD--------------------- 47 (102)
T ss_pred CchhhHHHHh-c-----------cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCc---------------------
Confidence 4567888888 2 288999999999999999999999999999876321
Q ss_pred cccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhC
Q 046627 467 NFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 467 ~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~ 529 (767)
+.++.+||+.+. .++.+|+|.++||+++|+.|+. +..|.|.++.+.|..||++++
T Consensus 48 ----~~~~~~d~~~~~---~~~~~~~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 48 ----IVLAKVDATAEK---DLASRFGVSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred ----eEEEEEEccchH---HHHHhCCCCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhcC
Confidence 278899998763 4677899999999999988876 889999999999999999863
No 28
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.61 E-value=2.9e-15 Score=138.57 Aligned_cols=104 Identities=15% Similarity=0.297 Sum_probs=84.9
Q ss_pred eeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHh
Q 046627 385 PRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLK 464 (767)
Q Consensus 385 ~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~ 464 (767)
..++..+|.+.+ +.. ..++++||.||||||++|+.+.|.|+++++.+++. .
T Consensus 7 ~~~~~~~~~~~~-~~~--------~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~------------------- 57 (111)
T cd02963 7 YSLTFSQYENEI-VPK--------SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-G------------------- 57 (111)
T ss_pred heeeHHHHHHhh-ccc--------cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-C-------------------
Confidence 356778888766 321 13899999999999999999999999999999752 1
Q ss_pred hccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHH
Q 046627 465 NINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIAD 527 (767)
Q Consensus 465 ~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k 527 (767)
+.++++||+.+. .++.+++|.++||+++|+ +|+....+.|.++.+.|.+||++
T Consensus 58 ------v~~~~vd~d~~~---~l~~~~~V~~~Pt~~i~~-~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 58 ------VGIATVNAGHER---RLARKLGAHSVPAIVGII-NGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ------ceEEEEeccccH---HHHHHcCCccCCEEEEEE-CCEEEEEecCCCCHHHHHHHHhc
Confidence 167888988763 356789999999999996 55667778999999999999976
No 29
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.59 E-value=5.6e-15 Score=134.82 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=72.4
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhh
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKS 489 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~ 489 (767)
.+++|||+|||+||++|+.+.|.++++++.+ ... .++.+|++.++....++.
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v---------------------------~~~~vd~d~~~~~~~l~~ 65 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDV---------------------------VFLLVNGDENDSTMELCR 65 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCC---------------------------EEEEEECCCChHHHHHHH
Confidence 3899999999999999999999999999988 322 677888877643345678
Q ss_pred cCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHh
Q 046627 490 MTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADH 528 (767)
Q Consensus 490 ~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~ 528 (767)
.|+|.++||++|| ++|+...++.| ...+.|.+.|..+
T Consensus 66 ~~~V~~~Pt~~~~-~~G~~v~~~~G-~~~~~l~~~~~~~ 102 (103)
T cd02985 66 REKIIEVPHFLFY-KDGEKIHEEEG-IGPDELIGDVLYY 102 (103)
T ss_pred HcCCCcCCEEEEE-eCCeEEEEEeC-CCHHHHHHHHHhc
Confidence 8999999999999 56677888999 5567777777654
No 30
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.2e-15 Score=158.63 Aligned_cols=109 Identities=19% Similarity=0.389 Sum_probs=95.1
Q ss_pred ceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhH
Q 046627 383 SIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEY 462 (767)
Q Consensus 383 ~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~ 462 (767)
.|+.+|..||.+.| +..| ..++|||+||||||++|+.+.|.+++++..|++..
T Consensus 24 ~I~dvT~anfe~~V-~~~S--------~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f------------------ 76 (304)
T COG3118 24 GIKDVTEANFEQEV-IQSS--------REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKF------------------ 76 (304)
T ss_pred cceechHhHHHHHH-HHHc--------cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCce------------------
Confidence 38999999999999 4432 36699999999999999999999999999999875
Q ss_pred HhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCC
Q 046627 463 LKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNN 531 (767)
Q Consensus 463 v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~ 531 (767)
++++|||+.+. .+...|+|+++||+++| ++|+-+..|.|....+.|.+||.++...
T Consensus 77 ---------~LakvN~D~~p---~vAaqfgiqsIPtV~af-~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 77 ---------KLAKVNCDAEP---MVAAQFGVQSIPTVYAF-KDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred ---------EEEEecCCcch---hHHHHhCcCcCCeEEEe-eCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 78889997662 35668999999999999 5666677899999999999999999987
No 31
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.58 E-value=7.1e-15 Score=132.24 Aligned_cols=103 Identities=23% Similarity=0.492 Sum_probs=84.6
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHH
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYL 463 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v 463 (767)
|..++..+|++.+ .+ +++++|.|||+||++|+++.|.++++++.++....
T Consensus 2 ~~~l~~~~~~~~~-~~-----------~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~------------------ 51 (104)
T cd02997 2 VVHLTDEDFRKFL-KK-----------EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGK------------------ 51 (104)
T ss_pred eEEechHhHHHHH-hh-----------CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCc------------------
Confidence 6788889999888 22 66999999999999999999999999999874321
Q ss_pred hhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHH
Q 046627 464 KNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFI 525 (767)
Q Consensus 464 ~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI 525 (767)
..++.+||+..+.+ .++..++|.++||+++|+.| +.+..|.|..+.+.|.+||
T Consensus 52 -------~~~~~id~~~~~~~-~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 52 -------GVLAAVDCTKPEHD-ALKEEYNVKGFPTFKYFENG-KFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred -------eEEEEEECCCCccH-HHHHhCCCccccEEEEEeCC-CeeEEeCCCCCHHHHHhhC
Confidence 26788899873333 46778999999999999754 5677899999999999885
No 32
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.58 E-value=8.4e-15 Score=151.77 Aligned_cols=112 Identities=22% Similarity=0.299 Sum_probs=90.7
Q ss_pred ceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhH
Q 046627 383 SIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEY 462 (767)
Q Consensus 383 ~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~ 462 (767)
.|.+++.+||++++ ... ....+++++|+||||||++|+++.|.|+++++.+++..
T Consensus 31 ~Vv~Lt~~nF~~~v-~~~------~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v------------------ 85 (224)
T PTZ00443 31 ALVLLNDKNFEKLT-QAS------TGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQV------------------ 85 (224)
T ss_pred CcEECCHHHHHHHH-hhh------cccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCe------------------
Confidence 58999999999988 221 01126899999999999999999999999999997642
Q ss_pred HhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCCC
Q 046627 463 LKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNNS 532 (767)
Q Consensus 463 v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~~ 532 (767)
.++.+||+.+. .++++|+|.+|||+++|+.| +....+.|.++.++|.+|+.++....
T Consensus 86 ---------~~~~VD~~~~~---~l~~~~~I~~~PTl~~f~~G-~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 86 ---------NVADLDATRAL---NLAKRFAIKGYPTLLLFDKG-KMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred ---------EEEEecCcccH---HHHHHcCCCcCCEEEEEECC-EEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 67889998763 46789999999999999854 54444568899999999999887433
No 33
>PHA02278 thioredoxin-like protein
Probab=99.56 E-value=1.3e-14 Score=133.02 Aligned_cols=86 Identities=13% Similarity=0.238 Sum_probs=69.4
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccc-hHHHhh
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDC-SLILKS 489 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~-~~~L~~ 489 (767)
+++|+|+|||+|||+|+.|.|.++++++.+.... .++++|++.++. ...++.
T Consensus 14 ~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~---------------------------~~~~vdvd~~~~d~~~l~~ 66 (103)
T PHA02278 14 KKDVIVMITQDNCGKCEILKSVIPMFQESGDIKK---------------------------PILTLNLDAEDVDREKAVK 66 (103)
T ss_pred CCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCc---------------------------eEEEEECCccccccHHHHH
Confidence 8999999999999999999999999988764332 466777776431 123677
Q ss_pred cCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHH
Q 046627 490 MTQREVYPALVLFPAERKNAISFKGDISVADVIKF 524 (767)
Q Consensus 490 ~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~F 524 (767)
+|+|.++||+++|+ +|+...++.|..+.+.|.++
T Consensus 67 ~~~I~~iPT~i~fk-~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 67 LFDIMSTPVLIGYK-DGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred HCCCccccEEEEEE-CCEEEEEEeCCCCHHHHHhh
Confidence 89999999999995 56778889999998888764
No 34
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.55 E-value=1.2e-14 Score=164.22 Aligned_cols=112 Identities=19% Similarity=0.400 Sum_probs=91.8
Q ss_pred ccCceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccch
Q 046627 380 EVDSIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLN 459 (767)
Q Consensus 380 ~~~~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~ 459 (767)
+...|.+|+..||+.++.... .+++|||.||||||++|+.|.|.|+++++.|++..
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~---------~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--------------- 404 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEE---------RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--------------- 404 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhc---------CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC---------------
Confidence 445799999999999982121 38899999999999999999999999999997531
Q ss_pred hhHHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEe-CCCCHHHHHHHHHH
Q 046627 460 GEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFK-GDISVADVIKFIAD 527 (767)
Q Consensus 460 ~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~-G~~t~e~L~~FI~k 527 (767)
+.+++|||+.++.. .++..|+|.+|||++||++|+..++.|. |.++.+.|+.||+-
T Consensus 405 -----------v~~~kVdvD~~~~~-~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 405 -----------VKVAKFRADGDQKE-FAKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred -----------cEEEEEECCCCccH-HHHHHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 26788888765322 2345799999999999998877788998 58999999999975
No 35
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.55 E-value=1.7e-14 Score=134.27 Aligned_cols=105 Identities=22% Similarity=0.416 Sum_probs=82.7
Q ss_pred ceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhH
Q 046627 383 SIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEY 462 (767)
Q Consensus 383 ~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~ 462 (767)
.|.+++.++|++.+ .+. +++|||.|||+||++|+.+.|.|+++++.+++...
T Consensus 2 ~v~~l~~~~f~~~i-~~~----------~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~----------------- 53 (114)
T cd02992 2 PVIVLDAASFNSAL-LGS----------PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRP----------------- 53 (114)
T ss_pred CeEECCHHhHHHHH-hcC----------CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCC-----------------
Confidence 37899999999999 443 68999999999999999999999999999975321
Q ss_pred HhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCee---EEEEeCC-CCHHHHHH
Q 046627 463 LKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKN---AISFKGD-ISVADVIK 523 (767)
Q Consensus 463 v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~---~i~y~G~-~t~e~L~~ 523 (767)
.+.++.+||+..... .+++.|+|++|||+++|+.+.+. -..|.|. +..+.+.+
T Consensus 54 -------~v~~~~vd~~~~~~~-~~~~~~~i~~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 54 -------VVRVAAVDCADEENV-ALCRDFGVTGYPTLRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred -------ceEEEEEeccchhhH-HHHHhCCCCCCCEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 127788998654332 46778999999999999887753 2467775 67776644
No 36
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.54 E-value=8.3e-14 Score=134.75 Aligned_cols=95 Identities=13% Similarity=0.125 Sum_probs=76.8
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhh
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKS 489 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~ 489 (767)
.++++||+|||+||++|+.+.|.++++++.|++...+ +.+|++.+... .++.
T Consensus 19 ~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~---------------------------v~v~vd~~~~~-~~~~ 70 (142)
T cd02950 19 NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNF---------------------------VMLNVDNPKWL-PEID 70 (142)
T ss_pred CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeE---------------------------EEEEcCCcccH-HHHH
Confidence 3899999999999999999999999999999765444 33333322222 2456
Q ss_pred cCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCCC
Q 046627 490 MTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNNS 532 (767)
Q Consensus 490 ~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~~ 532 (767)
.|+|.++||++||+++|+....+.|..+.+.|.++|++.....
T Consensus 71 ~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 71 RYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred HcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 7999999999999878888888999999999999999987655
No 37
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.53 E-value=4e-14 Score=128.87 Aligned_cols=89 Identities=25% Similarity=0.397 Sum_probs=73.6
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
++.+||.|||+||++|+++.|.|+++++.+++... .+.++.+||+.+. .+++.
T Consensus 15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~------------------------~~~~~~vd~~~~~---~~~~~ 67 (104)
T cd03000 15 EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGS------------------------PVRVGKLDATAYS---SIASE 67 (104)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCC------------------------cEEEEEEECccCH---hHHhh
Confidence 67999999999999999999999999999964310 0267888987653 45778
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHh
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADVIKFIADH 528 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~ 528 (767)
|+|.++||+++|. ++ ....|.|.++.++|.+|+++.
T Consensus 68 ~~I~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 68 FGVRGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred cCCccccEEEEEc-CC-CceeecCCCCHHHHHHHHHhh
Confidence 9999999999995 44 357799999999999999874
No 38
>PLN02309 5'-adenylylsulfate reductase
Probab=99.52 E-value=3.3e-14 Score=160.70 Aligned_cols=111 Identities=19% Similarity=0.382 Sum_probs=91.7
Q ss_pred ccCceeeeccccccccc-ccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccc
Q 046627 380 EVDSIPRVTVHSFSDLV-GLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDL 458 (767)
Q Consensus 380 ~~~~V~~Lt~~nF~e~V-~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~ 458 (767)
+...|..|+.++|++++ ..+ .++.+||+||||||++|+.|.|.|+++++.|++..
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~----------~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~-------------- 398 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLEN----------RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG-------------- 398 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhc----------CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--------------
Confidence 44578999999999998 222 38999999999999999999999999999987531
Q ss_pred hhhHHhhccccCcEEEEecCCcccchHHHhh-cCCCCcccEEEEEeCCCeeEEEEeC-CCCHHHHHHHHHHh
Q 046627 459 NGEYLKNINFKLPRIYLMDCTLNDCSLILKS-MTQREVYPALVLFPAERKNAISFKG-DISVADVIKFIADH 528 (767)
Q Consensus 459 ~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~-~~~I~gyPTi~Lf~aggK~~i~y~G-~~t~e~L~~FI~k~ 528 (767)
+.++++||+.+. ..++. .|+|.+|||++||+++.+.++.|.| .++.++|+.||+..
T Consensus 399 ------------V~f~kVD~d~~~--~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 399 ------------VKVAKFRADGDQ--KEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ------------eEEEEEECCCcc--hHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 278899998332 12343 5999999999999988878899985 79999999999864
No 39
>PRK10996 thioredoxin 2; Provisional
Probab=99.52 E-value=8.9e-14 Score=133.99 Aligned_cols=102 Identities=17% Similarity=0.331 Sum_probs=86.3
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHH
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYL 463 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v 463 (767)
+..++..+|++++. .++.|+|.|||+||++|+.+.|.|.++++.+.+..
T Consensus 37 ~i~~~~~~~~~~i~------------~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v------------------- 85 (139)
T PRK10996 37 VINATGETLDKLLQ------------DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKV------------------- 85 (139)
T ss_pred CEEcCHHHHHHHHh------------CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCe-------------------
Confidence 56788889998772 28999999999999999999999999999887643
Q ss_pred hhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHh
Q 046627 464 KNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADH 528 (767)
Q Consensus 464 ~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~ 528 (767)
.++++|++.+. .++++|+|.++||+++|+ +|+....+.|.++.+.|.+||+++
T Consensus 86 --------~~~~vd~~~~~---~l~~~~~V~~~Ptlii~~-~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 86 --------RFVKVNTEAER---ELSARFRIRSIPTIMIFK-NGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred --------EEEEEeCCCCH---HHHHhcCCCccCEEEEEE-CCEEEEEEcCCCCHHHHHHHHHHh
Confidence 56777776653 467789999999999996 667778889999999999999875
No 40
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.50 E-value=5.1e-14 Score=127.93 Aligned_cols=90 Identities=22% Similarity=0.291 Sum_probs=74.6
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHH---HHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccc-hH
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVV---REVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDC-SL 485 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~l---eeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~-~~ 485 (767)
.++++||.|||+||++|+++.|.+ .++++.++++. .++.+|++.++. ..
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~vd~~~~~~~~~ 62 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDV---------------------------VLLRADWTKNDPEIT 62 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCe---------------------------EEEEEecCCCCHHHH
Confidence 489999999999999999999998 67888886532 667777765421 24
Q ss_pred HHhhcCCCCcccEEEEEeC-CCeeEEEEeCCCCHHHHHHHHH
Q 046627 486 ILKSMTQREVYPALVLFPA-ERKNAISFKGDISVADVIKFIA 526 (767)
Q Consensus 486 ~L~~~~~I~gyPTi~Lf~a-ggK~~i~y~G~~t~e~L~~FI~ 526 (767)
.++.+|+|.++||++||++ +|+.+.++.|.++.++|.++|+
T Consensus 63 ~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 63 ALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred HHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 5677899999999999987 6778889999999999999874
No 41
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.49 E-value=4.3e-14 Score=131.68 Aligned_cols=75 Identities=23% Similarity=0.325 Sum_probs=61.7
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhh
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKS 489 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~ 489 (767)
.+++|+|.|||+||++|+.|.|.++++++.+++.. .++++|++.+. .+..
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v---------------------------~f~kVDvD~~~---~la~ 62 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFA---------------------------VIYLVDIDEVP---DFNK 62 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCce---------------------------EEEEEECCCCH---HHHH
Confidence 48899999999999999999999999999997643 67888888763 4677
Q ss_pred cCCCCcccEEEEEeCCCeeEEEEeCC
Q 046627 490 MTQREVYPALVLFPAERKNAISFKGD 515 (767)
Q Consensus 490 ~~~I~gyPTi~Lf~aggK~~i~y~G~ 515 (767)
.|+|.++||++||+. |+...+..|.
T Consensus 63 ~~~V~~iPTf~~fk~-G~~v~~~~G~ 87 (114)
T cd02954 63 MYELYDPPTVMFFFR-NKHMKIDLGT 87 (114)
T ss_pred HcCCCCCCEEEEEEC-CEEEEEEcCC
Confidence 899999999999965 4545555553
No 42
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.49 E-value=1.4e-13 Score=125.27 Aligned_cols=96 Identities=11% Similarity=0.211 Sum_probs=76.2
Q ss_pred cccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhcc
Q 046627 388 TVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNIN 467 (767)
Q Consensus 388 t~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~ 467 (767)
+.++|++++ . .+++++|+|||+||++|+.+.|.++++++.+++..
T Consensus 6 ~~~~~~~~i-~-----------~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~----------------------- 50 (102)
T cd02948 6 NQEEWEELL-S-----------NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDL----------------------- 50 (102)
T ss_pred CHHHHHHHH-c-----------cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCc-----------------------
Confidence 456777766 1 28899999999999999999999999999887421
Q ss_pred ccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHH
Q 046627 468 FKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIAD 527 (767)
Q Consensus 468 ~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k 527 (767)
+.++.+|++.. .+++.|+|+++||+++|+ +|+...+..| .+.+.|.++|.+
T Consensus 51 ---~~~~~vd~d~~----~~~~~~~v~~~Pt~~~~~-~g~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 51 ---LHFATAEADTI----DTLKRYRGKCEPTFLFYK-NGELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred ---EEEEEEeCCCH----HHHHHcCCCcCcEEEEEE-CCEEEEEEec-CChHHHHHHHhh
Confidence 15777787732 346789999999999995 5566666777 588999999875
No 43
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.48 E-value=1.7e-13 Score=121.92 Aligned_cols=99 Identities=20% Similarity=0.385 Sum_probs=81.0
Q ss_pred cccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhcc
Q 046627 388 TVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNIN 467 (767)
Q Consensus 388 t~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~ 467 (767)
+.++|.+.+ .+ .++.++|.||++||++|+.+.|.++++++.+.+..
T Consensus 2 ~~~~~~~~~-~~----------~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~----------------------- 47 (101)
T TIGR01068 2 TDANFDETI-AS----------SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKV----------------------- 47 (101)
T ss_pred CHHHHHHHH-hh----------cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCe-----------------------
Confidence 345666666 33 27799999999999999999999999998886532
Q ss_pred ccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHh
Q 046627 468 FKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADH 528 (767)
Q Consensus 468 ~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~ 528 (767)
.++.+|++.++ .++++|+|.++||+++|+ +++....+.|.++.+.|.+||+++
T Consensus 48 ----~~~~vd~~~~~---~~~~~~~v~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 48 ----KFVKLNVDENP---DIAAKYGIRSIPTLLLFK-NGKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred ----EEEEEECCCCH---HHHHHcCCCcCCEEEEEe-CCcEeeeecCCCCHHHHHHHHHhh
Confidence 77888888764 356789999999999996 455567788999999999999875
No 44
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.47 E-value=1.2e-13 Score=121.88 Aligned_cols=100 Identities=30% Similarity=0.573 Sum_probs=82.1
Q ss_pred eecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhh
Q 046627 386 RVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKN 465 (767)
Q Consensus 386 ~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~ 465 (767)
.|+.++|.+.+ .+ ++.++|.||++||++|+.+.|.|+++++.++....
T Consensus 2 ~l~~~~~~~~i-~~-----------~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~-------------------- 49 (101)
T cd02961 2 ELTDDNFDELV-KD-----------SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGK-------------------- 49 (101)
T ss_pred cccHHHHHHHH-hC-----------CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCc--------------------
Confidence 45667888888 22 45999999999999999999999999998852111
Q ss_pred ccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHH
Q 046627 466 INFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFI 525 (767)
Q Consensus 466 ~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI 525 (767)
+.++.+||+.+ ..++..|+|.++||+++|+.+++....|.|.++.++|.+|+
T Consensus 50 -----~~~~~v~~~~~---~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 50 -----VVVAKVDCTAN---NDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred -----eEEEEeeccch---HHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhhC
Confidence 27888888874 34677899999999999987767788999999999998875
No 45
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2e-13 Score=125.79 Aligned_cols=87 Identities=21% Similarity=0.311 Sum_probs=72.6
Q ss_pred cCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHh
Q 046627 409 AWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILK 488 (767)
Q Consensus 409 a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~ 488 (767)
+.++.++|+|||+|||+|+.+.|.+++|+.+|.+ . .|+++|++. + ..++
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v---------------------------~Flkvdvde--~-~~~~ 67 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-V---------------------------VFLKVDVDE--L-EEVA 67 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-C---------------------------EEEEEeccc--C-HhHH
Confidence 4579999999999999999999999999999986 3 677888876 3 3468
Q ss_pred hcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHh
Q 046627 489 SMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADH 528 (767)
Q Consensus 489 ~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~ 528 (767)
+.++|...||++|| ++|+....+.|. +.+.|.+.|.++
T Consensus 68 ~~~~V~~~PTf~f~-k~g~~~~~~vGa-~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 68 KEFNVKAMPTFVFY-KGGEEVDEVVGA-NKAELEKKIAKH 105 (106)
T ss_pred HhcCceEeeEEEEE-ECCEEEEEEecC-CHHHHHHHHHhc
Confidence 89999999999999 566777888884 444888887765
No 46
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.46 E-value=2.7e-13 Score=125.68 Aligned_cols=92 Identities=14% Similarity=0.197 Sum_probs=74.3
Q ss_pred CceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhh
Q 046627 382 DSIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGE 461 (767)
Q Consensus 382 ~~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~ 461 (767)
+.|..++.++|.+.+ .+. ..++.|+|.||||||++|+.+.|.++++++.+.+ .
T Consensus 4 g~v~~i~~~~f~~~i-~~~--------~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v----------------- 56 (113)
T cd02957 4 GEVREISSKEFLEEV-TKA--------SKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-T----------------- 56 (113)
T ss_pred ceEEEEcHHHHHHHH-Hcc--------CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-c-----------------
Confidence 458889999999998 332 0148999999999999999999999999998853 1
Q ss_pred HHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCC
Q 046627 462 YLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGD 515 (767)
Q Consensus 462 ~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~ 515 (767)
.++++|++.+ .++++|+|.++||+++|.. |+...++.|.
T Consensus 57 ----------~f~~vd~~~~----~l~~~~~i~~~Pt~~~f~~-G~~v~~~~G~ 95 (113)
T cd02957 57 ----------KFVKINAEKA----FLVNYLDIKVLPTLLVYKN-GELIDNIVGF 95 (113)
T ss_pred ----------EEEEEEchhh----HHHHhcCCCcCCEEEEEEC-CEEEEEEecH
Confidence 6788898766 4677899999999999965 5656666663
No 47
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.45 E-value=8.6e-14 Score=145.09 Aligned_cols=95 Identities=20% Similarity=0.352 Sum_probs=79.4
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
...++|.||||||+|||++.|+|.++...+++... .+.++++|||.-. .++++
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~------------------------PikVGKlDaT~f~---aiAne 95 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGL------------------------PIKVGKLDATRFP---AIANE 95 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCC------------------------ceeecccccccch---hhHhh
Confidence 66789999999999999999999999988876321 1388999999752 45778
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCCCCc
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNNSHD 534 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~~~~ 534 (767)
|+|+|||||.||+. ...+.|.|+|+.+.|++|..+.+..-..
T Consensus 96 fgiqGYPTIk~~kg--d~a~dYRG~R~Kd~iieFAhR~a~aiI~ 137 (468)
T KOG4277|consen 96 FGIQGYPTIKFFKG--DHAIDYRGGREKDAIIEFAHRCAAAIIE 137 (468)
T ss_pred hccCCCceEEEecC--CeeeecCCCccHHHHHHHHHhcccceee
Confidence 99999999999943 3578999999999999999987765544
No 48
>PTZ00102 disulphide isomerase; Provisional
Probab=99.45 E-value=3.3e-13 Score=153.77 Aligned_cols=111 Identities=19% Similarity=0.345 Sum_probs=93.8
Q ss_pred ceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhH
Q 046627 383 SIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEY 462 (767)
Q Consensus 383 ~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~ 462 (767)
.|..|+.++|++.+ . .++.+||.|||+||++|+++.|.|+++++.++....
T Consensus 33 ~v~~l~~~~f~~~i-~-----------~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~----------------- 83 (477)
T PTZ00102 33 HVTVLTDSTFDKFI-T-----------ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKS----------------- 83 (477)
T ss_pred CcEEcchhhHHHHH-h-----------cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCC-----------------
Confidence 37899999999988 2 277899999999999999999999999998864320
Q ss_pred HhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCCCCc
Q 046627 463 LKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNNSHD 534 (767)
Q Consensus 463 v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~~~~ 534 (767)
.+.++.+||+.+. .+|.+|+|.+|||+++|..|+. +.|.|.++.+.|.+||.++.+....
T Consensus 84 -------~i~~~~vd~~~~~---~l~~~~~i~~~Pt~~~~~~g~~--~~y~g~~~~~~l~~~l~~~~~~~~~ 143 (477)
T PTZ00102 84 -------EIVLASVDATEEM---ELAQEFGVRGYPTIKFFNKGNP--VNYSGGRTADGIVSWIKKLTGPAVT 143 (477)
T ss_pred -------cEEEEEEECCCCH---HHHHhcCCCcccEEEEEECCce--EEecCCCCHHHHHHHHHHhhCCCce
Confidence 1389999998773 5788999999999999976654 3899999999999999999876654
No 49
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.44 E-value=3.7e-13 Score=151.79 Aligned_cols=112 Identities=19% Similarity=0.338 Sum_probs=94.2
Q ss_pred ceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhH
Q 046627 383 SIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEY 462 (767)
Q Consensus 383 ~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~ 462 (767)
.|..|+.++|++++ . .++.++|.||||||++|+++.|.|.++++.++...
T Consensus 2 ~v~~l~~~~~~~~i-~-----------~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~------------------ 51 (462)
T TIGR01130 2 DVLVLTKDNFDDFI-K-----------SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKG------------------ 51 (462)
T ss_pred CceECCHHHHHHHH-h-----------cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcC------------------
Confidence 37889999999988 2 27789999999999999999999999999887531
Q ss_pred HhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCCCC
Q 046627 463 LKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNNSH 533 (767)
Q Consensus 463 v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~~~ 533 (767)
..+.++.+||+.+ ..+|.+++|.+|||+++|+.|+.....|.|.++.+.|.+||.+......
T Consensus 52 ------~~v~~~~vd~~~~---~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 113 (462)
T TIGR01130 52 ------PPIKLAKVDATEE---KDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPAV 113 (462)
T ss_pred ------CceEEEEEECCCc---HHHHHhCCCccccEEEEEeCCccceeEecCCCCHHHHHHHHHHhcCCCc
Confidence 0138899999887 3578899999999999997665437889999999999999999886554
No 50
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.42 E-value=6.7e-13 Score=129.95 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=73.8
Q ss_pred ceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhH
Q 046627 383 SIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEY 462 (767)
Q Consensus 383 ~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~ 462 (767)
.|..++.++|++.+ ... .+++++|+||||||++|+.+.|.|+++++.+++..
T Consensus 29 ~v~~l~~~~f~~~l-~~~---------~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~------------------ 80 (152)
T cd02962 29 HIKYFTPKTLEEEL-ERD---------KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNN------------------ 80 (152)
T ss_pred ccEEcCHHHHHHHH-Hhc---------CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC------------------
Confidence 47889999999988 221 26799999999999999999999999999986421
Q ss_pred HhhccccCcEEEEecCCcccchHHHhhcCCCCc------ccEEEEEeCCCeeEEEEeC
Q 046627 463 LKNINFKLPRIYLMDCTLNDCSLILKSMTQREV------YPALVLFPAERKNAISFKG 514 (767)
Q Consensus 463 v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~g------yPTi~Lf~aggK~~i~y~G 514 (767)
+.++++|++.+. .++++|+|.+ +||+++|+ +|+...++.|
T Consensus 81 --------v~f~~VDvd~~~---~la~~~~V~~~~~v~~~PT~ilf~-~Gk~v~r~~G 126 (152)
T cd02962 81 --------LKFGKIDIGRFP---NVAEKFRVSTSPLSKQLPTIILFQ-GGKEVARRPY 126 (152)
T ss_pred --------eEEEEEECCCCH---HHHHHcCceecCCcCCCCEEEEEE-CCEEEEEEec
Confidence 177888987763 4677888887 99999996 5666666665
No 51
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.41 E-value=8.6e-13 Score=122.30 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=82.4
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCc--ChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhh
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSW--CGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGE 461 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApW--Cg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~ 461 (767)
.++++..||++.+. .+.+++|.|||+| |++|+.+.|.|+++++.|.+..
T Consensus 12 ~~~~~~~~~~~~~~------------~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v----------------- 62 (111)
T cd02965 12 WPRVDAATLDDWLA------------AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRF----------------- 62 (111)
T ss_pred CcccccccHHHHHh------------CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcE-----------------
Confidence 67899999998882 2789999999997 9999999999999999998653
Q ss_pred HHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHH
Q 046627 462 YLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIK 523 (767)
Q Consensus 462 ~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~ 523 (767)
.++++|++.+. .++.+|+|.++||++||+ +|+....+.|.++.+++..
T Consensus 63 ----------~f~kVdid~~~---~la~~f~V~sIPTli~fk-dGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 63 ----------RAAVVGRADEQ---ALAARFGVLRTPALLFFR-DGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred ----------EEEEEECCCCH---HHHHHcCCCcCCEEEEEE-CCEEEEEEeCccCHHHHhh
Confidence 57788887763 567899999999999995 5577778899999888753
No 52
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.41 E-value=9.6e-13 Score=127.12 Aligned_cols=103 Identities=18% Similarity=0.214 Sum_probs=80.6
Q ss_pred ccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccc
Q 046627 389 VHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINF 468 (767)
Q Consensus 389 ~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~ 468 (767)
...|++.+ .+. .++.|+|.|||+||++|+.+.|.++++++.+++..
T Consensus 11 ~~e~d~~I-~~~---------~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~------------------------ 56 (142)
T PLN00410 11 GWAVDQAI-LAE---------EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFA------------------------ 56 (142)
T ss_pred HHHHHHHH-Hhc---------CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCce------------------------
Confidence 45677777 321 38899999999999999999999999999997643
Q ss_pred cCcEEEEecCCcccchHHHhhcCCCCcccEEE-EEeCCCeeEEEEeC--------CCCHHHHHHHHHHhCCC
Q 046627 469 KLPRIYLMDCTLNDCSLILKSMTQREVYPALV-LFPAERKNAISFKG--------DISVADVIKFIADHGNN 531 (767)
Q Consensus 469 ~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~-Lf~aggK~~i~y~G--------~~t~e~L~~FI~k~~~~ 531 (767)
.|+++|++.+. .++..|+|.+.||++ ||+.|.+...+..| ..+.++|++-|+.....
T Consensus 57 ---~~~kVDVDe~~---dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 57 ---VIYLVDITEVP---DFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred ---EEEEEECCCCH---HHHHHcCccCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHH
Confidence 67888888763 467789999887777 77655446777788 57888888888876543
No 53
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.37 E-value=2e-11 Score=125.91 Aligned_cols=190 Identities=11% Similarity=0.084 Sum_probs=120.9
Q ss_pred HhhcCCccEEEEeec---CC-cChhhh-cccCCchhhhhcCCc-eEEEEeC----ChhhhhhhcCCCCCcEEEEEcCCCC
Q 046627 255 YYLGHDLTTAKDVKV---GE-KSSSQI-SMSGDPQLEFQGFRG-SFFFNDG----NYRLLGALTGGSTIPSLAIVDPISN 324 (767)
Q Consensus 255 ~~~~~~~p~~~~f~~---~~-e~s~~~-e~l~~~~~~A~~fkg-k~~fvD~----~~~~l~~~~~~~~~P~l~I~d~~~~ 324 (767)
.-+.+++.+.+ |+. +| .....+ ..+ +++|++|.+ ++.+++. +..+.+.| +..++|++++|+.+..
T Consensus 15 ~~~~~~~~i~~-f~~~~a~wC~~C~~~~p~l---~~la~~~~~~~i~~v~vd~~~~~~l~~~~-~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 15 KELKNPVEIVV-FTDNDKEGCQYCKETEQLL---EELSEVSPKLKLEIYDFDTPEDKEEAEKY-GVERVPTTIILEEGKD 89 (215)
T ss_pred HhcCCCeEEEE-EcCCCCCCCCchHHHHHHH---HHHHhhCCCceEEEEecCCcccHHHHHHc-CCCccCEEEEEeCCee
Confidence 34456666544 444 22 234444 555 777888843 3556543 35666767 6789999999985432
Q ss_pred ceeecCCccCCCHHHHHHHHHHHhcCCcCCCcccccccccccCCCCCCccccCccccCceeeecccccccccccccCCcc
Q 046627 325 QHYVASKEATFNYSSMADFLHGFLNGTLLPYQRSESILQISREATHPPFVNMDFHEVDSIPRVTVHSFSDLVGLNQSDNE 404 (767)
Q Consensus 325 ~kY~~~~~~~~t~e~L~~Fi~~~l~Gkl~p~~kSe~~p~~~~~~~~p~fvn~df~~~~~V~~Lt~~nF~e~V~~d~~~~~ 404 (767)
....+. +..+.+.+..||+.+++=. +. . ..+...+.+.+-.+
T Consensus 90 ~~~~~~--G~~~~~~l~~~i~~~~~~~--~~--~--------------------------~~L~~~~~~~l~~~------ 131 (215)
T TIGR02187 90 GGIRYT--GIPAGYEFAALIEDIVRVS--QG--E--------------------------PGLSEKTVELLQSL------ 131 (215)
T ss_pred eEEEEe--ecCCHHHHHHHHHHHHHhc--CC--C--------------------------CCCCHHHHHHHHhc------
Confidence 111232 3567789999999885311 00 0 01122222222211
Q ss_pred cccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccch
Q 046627 405 NAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCS 484 (767)
Q Consensus 405 ~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~ 484 (767)
.+..+++.|||+||++|+.+.|.+++++.... .. .+..+|.+.+.
T Consensus 132 -----~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i---------------------------~~~~vD~~~~~-- 176 (215)
T TIGR02187 132 -----DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KI---------------------------LGEMIEANENP-- 176 (215)
T ss_pred -----CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ce---------------------------EEEEEeCCCCH--
Confidence 13445556999999999999999999887642 21 55678877653
Q ss_pred HHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHH
Q 046627 485 LILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIAD 527 (767)
Q Consensus 485 ~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k 527 (767)
.++.+|+|.++||++++.. ++ .+.|..+.++|.+||.+
T Consensus 177 -~~~~~~~V~~vPtl~i~~~-~~---~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 177 -DLAEKYGVMSVPKIVINKG-VE---EFVGAYPEEQFLEYILS 214 (215)
T ss_pred -HHHHHhCCccCCEEEEecC-CE---EEECCCCHHHHHHHHHh
Confidence 4567899999999999843 33 28999999999999875
No 54
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.37 E-value=2.6e-12 Score=120.70 Aligned_cols=104 Identities=12% Similarity=0.187 Sum_probs=76.0
Q ss_pred CC-CcEEEEEEcCcChhhHHHHHHHH---HHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchH
Q 046627 410 WN-EDVVVLFSSSWCGFCQRMELVVR---EVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSL 485 (767)
Q Consensus 410 ~~-K~VLV~FyApWCg~Ck~~~P~le---eLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~ 485 (767)
.+ |++||.|||+||++|+++.|.+. ++.+.+++...++.++++...... .++... .-..
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~----------------~~~~~~-~~~~ 74 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVT----------------DFDGEA-LSEK 74 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceee----------------ccCCCC-ccHH
Confidence 47 99999999999999999999885 677777665555566555432100 001000 0123
Q ss_pred HHhhcCCCCcccEEEEEeCC-CeeEEEEeCCCCHHHHHHHHHHhCC
Q 046627 486 ILKSMTQREVYPALVLFPAE-RKNAISFKGDISVADVIKFIADHGN 530 (767)
Q Consensus 486 ~L~~~~~I~gyPTi~Lf~ag-gK~~i~y~G~~t~e~L~~FI~k~~~ 530 (767)
.++..|+|.++||++||..+ |+...++.|.++.+.+.++|+...+
T Consensus 75 ~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 75 ELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred HHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 46778999999999999887 7888899999999999999887543
No 55
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.36 E-value=3.9e-12 Score=114.40 Aligned_cols=86 Identities=16% Similarity=0.324 Sum_probs=73.2
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhh
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKS 489 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~ 489 (767)
.+++|+|.||++||++|+.+.|.++++++.+.+.. .++.+|++.+. .+..
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v---------------------------~~~~id~d~~~---~l~~ 61 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAV---------------------------HFVEIDIDEDQ---EIAE 61 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCce---------------------------EEEEEECCCCH---HHHH
Confidence 48999999999999999999999999999987542 56778876552 3566
Q ss_pred cCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHH
Q 046627 490 MTQREVYPALVLFPAERKNAISFKGDISVADVIKFIA 526 (767)
Q Consensus 490 ~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~ 526 (767)
.++|.++||+++|+ +|+...++.|..+.++|.+||+
T Consensus 62 ~~~v~~vPt~~i~~-~g~~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 62 AAGIMGTPTVQFFK-DKELVKEISGVKMKSEYREFIE 97 (97)
T ss_pred HCCCeeccEEEEEE-CCeEEEEEeCCccHHHHHHhhC
Confidence 89999999999996 5677888999999999999874
No 56
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.35 E-value=4.5e-12 Score=113.03 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=66.7
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
++.|+|.|||+||++|+++.|.++++++.+.... .++++|++.+. .++.+
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i---------------------------~~~~vd~~~~~---~~~~~ 63 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSV---------------------------LFLSIEAEELP---EISEK 63 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCce---------------------------EEEEEccccCH---HHHHh
Confidence 6999999999999999999999999999873322 67788886542 46778
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHH
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADVIKFI 525 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI 525 (767)
|+|.++||+++|+ +|+....+.| ...+.|.+.|
T Consensus 64 ~~i~~~Pt~~~~~-~g~~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 64 FEITAVPTFVFFR-NGTIVDRVSG-ADPKELAKKV 96 (97)
T ss_pred cCCccccEEEEEE-CCEEEEEEeC-CCHHHHHHhh
Confidence 9999999999996 5565666667 5677777765
No 57
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.34 E-value=3.6e-12 Score=118.61 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=77.6
Q ss_pred Cceeeecc-cccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchh
Q 046627 382 DSIPRVTV-HSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNG 460 (767)
Q Consensus 382 ~~V~~Lt~-~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~ 460 (767)
+++..++. .+|.+.+ . .++.|+|.||+|||++|+.+.|.++++++.+.+ .
T Consensus 4 g~v~~i~~~~~~~~~i-~-----------~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i---------------- 54 (113)
T cd02989 4 GKYREVSDEKEFFEIV-K-----------SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-T---------------- 54 (113)
T ss_pred CCeEEeCCHHHHHHHH-h-----------CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-C----------------
Confidence 35777877 7888888 2 268999999999999999999999999998853 1
Q ss_pred hHHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeC--------CCCHHHHHHHH
Q 046627 461 EYLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKG--------DISVADVIKFI 525 (767)
Q Consensus 461 ~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G--------~~t~e~L~~FI 525 (767)
.++++|++.+. .+.++|+|.++||+++|..| +...++.| ..+.+++..||
T Consensus 55 -----------~f~~Vd~~~~~---~l~~~~~v~~vPt~l~fk~G-~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 55 -----------KFIKVNAEKAP---FLVEKLNIKVLPTVILFKNG-KTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred -----------EEEEEEcccCH---HHHHHCCCccCCEEEEEECC-EEEEEEECccccCCCCCCCHHHHHHHh
Confidence 67888988763 46778999999999999655 54444433 44566676665
No 58
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.34 E-value=9.6e-12 Score=125.34 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=86.5
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
+|+++|+|||+||++|++++|.+.++++. ...+++|+++++. ......+++++++++.+. .|.. . .+...
T Consensus 68 gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~-~~~~~~~~~~~~~~~~~~-~D~~-~----~~~~~ 137 (185)
T PRK15412 68 GKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDR-QKAISWLKELGNPYALSL-FDGD-G----MLGLD 137 (185)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCH-HHHHHHHHHcCCCCceEE-EcCC-c----cHHHh
Confidence 89999999999999999999999998652 4678899876654 234557888888887643 2322 1 23446
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhC
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~ 529 (767)
|++.++|++++++++|+....+.|..+.+++.+.|+...
T Consensus 138 ~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 138 LGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred cCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 899999999999999998889999999999888887654
No 59
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.33 E-value=5.9e-12 Score=126.14 Aligned_cols=106 Identities=13% Similarity=0.191 Sum_probs=82.5
Q ss_pred Cceeeecc-cccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchh
Q 046627 382 DSIPRVTV-HSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNG 460 (767)
Q Consensus 382 ~~V~~Lt~-~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~ 460 (767)
+.|..++. .+|.+.| .+. ..++.|+|.|||+||++|+.+.|.|++|++.|.. .
T Consensus 62 g~v~ei~~~~~f~~~v-~~~--------~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-v---------------- 115 (175)
T cd02987 62 GKVYELDSGEQFLDAI-DKE--------GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-V---------------- 115 (175)
T ss_pred CeEEEcCCHHHHHHHH-Hhc--------CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-e----------------
Confidence 45889998 9999998 332 1245999999999999999999999999998853 2
Q ss_pred hHHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeC-------CCCHHHHHHHHHHhC
Q 046627 461 EYLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKG-------DISVADVIKFIADHG 529 (767)
Q Consensus 461 ~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G-------~~t~e~L~~FI~k~~ 529 (767)
.+++||++.+ .++..|+|.++||+++|.. |+....+.| ..+.++|..||.+++
T Consensus 116 -----------kF~kVd~d~~----~l~~~f~v~~vPTlllyk~-G~~v~~~vG~~~~~g~~f~~~~le~~L~~~g 175 (175)
T cd02987 116 -----------KFCKIRASAT----GASDEFDTDALPALLVYKG-GELIGNFVRVTEDLGEDFDAEDLESFLVEYG 175 (175)
T ss_pred -----------EEEEEeccch----hhHHhCCCCCCCEEEEEEC-CEEEEEEechHHhcCCCCCHHHHHHHHHhcC
Confidence 7788888865 3566899999999999965 554433322 567889999988753
No 60
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.30 E-value=2.3e-11 Score=121.17 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=85.4
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
+|+++|+||++||++|+++.|.++++++. ...+++|+.+.... .....++++++.++.+. .|-. . .+...
T Consensus 63 gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~-~~~~~~~~~~~~f~~v~-~D~~-~----~~~~~ 132 (173)
T TIGR00385 63 GKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQ-NALKFLKELGNPYQAIL-IDPN-G----KLGLD 132 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChH-HHHHHHHHcCCCCceEE-ECCC-C----chHHh
Confidence 88999999999999999999999988753 46788888765432 22356777777776432 2321 2 24457
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhC
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~ 529 (767)
|++.++|++++++++|+....+.|..+.+++.++|+++.
T Consensus 133 ~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 133 LGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred cCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 999999999999888988888999999999999998875
No 61
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.29 E-value=3.8e-12 Score=133.59 Aligned_cols=110 Identities=23% Similarity=0.340 Sum_probs=90.1
Q ss_pred cccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhcc
Q 046627 388 TVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNIN 467 (767)
Q Consensus 388 t~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~ 467 (767)
+..|++.+++ ++..|+|.|||.||++++.++|+|++.|..|+...-
T Consensus 2 t~~N~~~il~------------s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P---------------------- 47 (375)
T KOG0912|consen 2 TSENIDSILD------------SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFP---------------------- 47 (375)
T ss_pred ccccHHHhhc------------cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCC----------------------
Confidence 4456666662 388999999999999999999999999999986431
Q ss_pred ccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCCCCc
Q 046627 468 FKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNNSHD 534 (767)
Q Consensus 468 ~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~~~~ 534 (767)
-+.++++++||+.++ .++.+|.|..|||+.+|..|--....|.|.|+++.|.+||++..+....
T Consensus 48 ~~kvvwg~VDcd~e~---~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~ 111 (375)
T KOG0912|consen 48 EGKVVWGKVDCDKED---DIADKYHINKYPTLKVFRNGEMMKREYRGQRSVEALIEFIEKQLSDPIN 111 (375)
T ss_pred CcceEEEEcccchhh---HHhhhhccccCceeeeeeccchhhhhhccchhHHHHHHHHHHHhccHHH
Confidence 024599999999875 4677999999999999965544455899999999999999999887644
No 62
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.28 E-value=2.8e-11 Score=113.57 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=79.4
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
+++++|.|||+||++|+++.|.++++++.+. ..+++|+.+.... ...+.++++++.++.+. +| .+ ..++..
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~-~~~~~~~~~~~~~~~~~-~D--~~---~~~~~~ 95 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPE-NALAWLARHGNPYAAVG-FD--PD---GRVGID 95 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHH-HHHHHHHhcCCCCceEE-EC--Cc---chHHHh
Confidence 7899999999999999999999999988763 7788888765443 33456777777765432 23 11 235567
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHH
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADV 521 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L 521 (767)
|++.++|++++++++|+....+.|.++.+.|
T Consensus 96 ~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 96 LGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred cCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 9999999999998899988889999887754
No 63
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.24 E-value=3.8e-11 Score=111.76 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=71.7
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
.+.++|.|||+||++|+.+.|.++++++.+ +.. .+..+|.+.+. .+...
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i---------------------------~~~~vd~d~~~---~l~~~ 70 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKL---------------------------KLEIYDFDEDK---EKAEK 70 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cce---------------------------EEEEEeCCcCH---HHHHH
Confidence 667899999999999999999999999876 322 56677776552 46778
Q ss_pred CCCCcccEEEEEeCCCee-EEEEeCCCCHHHHHHHHHHhC
Q 046627 491 TQREVYPALVLFPAERKN-AISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~-~i~y~G~~t~e~L~~FI~k~~ 529 (767)
|+|.++||+++|..|++. .++|.|..+.++|.+||..-.
T Consensus 71 ~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 71 YGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred cCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHHHH
Confidence 999999999999776543 457899999999999998654
No 64
>PTZ00051 thioredoxin; Provisional
Probab=99.24 E-value=3.4e-11 Score=107.69 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=63.0
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
++.++|.||++||++|+.+.|.++++++.+.+ . .++.+|++.+ ..++.+
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~---------------------------~~~~vd~~~~---~~~~~~ 66 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-M---------------------------VFVKVDVDEL---SEVAEK 66 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-c---------------------------EEEEEECcch---HHHHHH
Confidence 88999999999999999999999999997653 1 6677888754 245778
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHH
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADV 521 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L 521 (767)
|+|.++||+++|. +|+....+.|. ..++|
T Consensus 67 ~~v~~~Pt~~~~~-~g~~~~~~~G~-~~~~~ 95 (98)
T PTZ00051 67 ENITSMPTFKVFK-NGSVVDTLLGA-NDEAL 95 (98)
T ss_pred CCCceeeEEEEEe-CCeEEEEEeCC-CHHHh
Confidence 9999999999995 56667788884 45554
No 65
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.24 E-value=5.9e-11 Score=136.20 Aligned_cols=114 Identities=14% Similarity=0.197 Sum_probs=83.5
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccchhh----HHhhccccCcEEEEecCCcccch
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLNGE----YLKNINFKLPRIYLMDCTLNDCS 484 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~~~----~v~~~~~~~~vIa~ID~t~ND~~ 484 (767)
.+|+|||+|||+||++|++++|.++++++.++. ...+|.|+++......+.. .++..++. . ..++++.+
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~--~-~pV~~D~~--- 128 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYP--K-LPVLTDNG--- 128 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCc--c-cceecccc---
Confidence 389999999999999999999999999999974 4678888764322211112 22222221 1 12223322
Q ss_pred HHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhC
Q 046627 485 LILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 485 ~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~ 529 (767)
..+.+.|+|.++||++++.++|+....+.|.++.+.|.++|+.-.
T Consensus 129 ~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~ 173 (521)
T PRK14018 129 GTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNPN 173 (521)
T ss_pred HHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhh
Confidence 345678999999999999888998889999999999999999544
No 66
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.24 E-value=2.5e-11 Score=118.15 Aligned_cols=94 Identities=14% Similarity=0.191 Sum_probs=71.5
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHHcc--------CceeeeccccCCcccchhhHHhhccccCcEEEEecCCcc
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAVKG--------YMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLN 481 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~--------~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~N 481 (767)
.+|+|+|+|||+||++|++++|.+.++++.+++ ...++.|+.|.... ...++++++++.++.+-..+.
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~-~~~~f~~~~~~~~~~~p~~~~--- 99 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQ-QQESFLKDMPKKWLFLPFEDE--- 99 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHH-HHHHHHHHCCCCceeecccch---
Confidence 389999999999999999999999999998864 36788888876542 245677777766544322221
Q ss_pred cchHHHhhcCCCCcccEEEEEeCCCee
Q 046627 482 DCSLILKSMTQREVYPALVLFPAERKN 508 (767)
Q Consensus 482 D~~~~L~~~~~I~gyPTi~Lf~aggK~ 508 (767)
....+...|++.++||+++++++|+.
T Consensus 100 -~~~~l~~~y~v~~iPt~vlId~~G~V 125 (146)
T cd03008 100 -FRRELEAQFSVEELPTVVVLKPDGDV 125 (146)
T ss_pred -HHHHHHHHcCCCCCCEEEEECCCCcE
Confidence 12246678999999999999988874
No 67
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.24 E-value=3.5e-11 Score=113.65 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=72.3
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHH
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYL 463 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v 463 (767)
+..++...|.+.+ . .++.++|+|+++|||+|+.+.|.++++++..+ ..+..|+++.+......
T Consensus 8 ~~~it~~~~~~~i-~-----------~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~--~~~y~vdvd~~~~~~~~--- 70 (122)
T TIGR01295 8 LEVTTVVRALEAL-D-----------KKETATFFIGRKTCPYCRKFSGTLSGVVAQTK--APIYYIDSENNGSFEMS--- 70 (122)
T ss_pred ceecCHHHHHHHH-H-----------cCCcEEEEEECCCChhHHHHhHHHHHHHHhcC--CcEEEEECCCccCcCcc---
Confidence 4567777788777 2 27889999999999999999999999999833 33334444322100000
Q ss_pred hhccccCcEEEEecCCcccchHHHhhcC----CCCcccEEEEEeCCCeeEEEEeC-CCCHHHHHHHHH
Q 046627 464 KNINFKLPRIYLMDCTLNDCSLILKSMT----QREVYPALVLFPAERKNAISFKG-DISVADVIKFIA 526 (767)
Q Consensus 464 ~~~~~~~~vIa~ID~t~ND~~~~L~~~~----~I~gyPTi~Lf~aggK~~i~y~G-~~t~e~L~~FI~ 526 (767)
..+++ ..+...| +|.++||+++|. +|+......| ..+.++|.+|+.
T Consensus 71 ---------------~~~~~-~~~~~~~~i~~~i~~~PT~v~~k-~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 71 ---------------SLNDL-TAFRSRFGIPTSFMGTPTFVHIT-DGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred ---------------cHHHH-HHHHHHcCCcccCCCCCEEEEEe-CCeEEEEEeCCCCCHHHHHHHhh
Confidence 00011 1223344 466799999995 5566667778 567999999974
No 68
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.24 E-value=2.6e-11 Score=112.70 Aligned_cols=72 Identities=13% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhh
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKS 489 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~ 489 (767)
.+|.|+|.|+|+||++|+.|.|.++++++.|++. ++|+++|++.+. .+++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---------------------------~~f~kVDVDev~---dva~ 62 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---------------------------ASIYLVDVDKVP---VYTQ 62 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---------------------------eEEEEEeccccH---HHHH
Confidence 4999999999999999999999999999999653 278899988662 4677
Q ss_pred cCCCCcccEEEEEeCCCeeEEE
Q 046627 490 MTQREVYPALVLFPAERKNAIS 511 (767)
Q Consensus 490 ~~~I~gyPTi~Lf~aggK~~i~ 511 (767)
.|+|...||++||..|....+.
T Consensus 63 ~y~I~amPtfvffkngkh~~~d 84 (114)
T cd02986 63 YFDISYIPSTIFFFNGQHMKVD 84 (114)
T ss_pred hcCceeCcEEEEEECCcEEEEe
Confidence 8999999999999766544443
No 69
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.23 E-value=2.9e-11 Score=122.88 Aligned_cols=103 Identities=13% Similarity=0.169 Sum_probs=79.9
Q ss_pred CceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhh
Q 046627 382 DSIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGE 461 (767)
Q Consensus 382 ~~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~ 461 (767)
+.|..++..+|...| .+.+ .++.|+|.||++||++|+.|.|.|++||+.|.. .
T Consensus 82 G~v~eis~~~f~~eV-~~as--------~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-v----------------- 134 (192)
T cd02988 82 GEVYEISKPDYVREV-TEAS--------KDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-T----------------- 134 (192)
T ss_pred CeEEEeCHHHHHHHH-HhcC--------CCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-C-----------------
Confidence 468999999999887 3321 146899999999999999999999999999853 2
Q ss_pred HHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeC-------CCCHHHHHHHHHHh
Q 046627 462 YLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKG-------DISVADVIKFIADH 528 (767)
Q Consensus 462 ~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G-------~~t~e~L~~FI~k~ 528 (767)
.|++||++.. ...|+|.++||+++|. +|+....+.| ..+.++|..+|.+.
T Consensus 135 ----------kFvkI~ad~~------~~~~~i~~lPTlliyk-~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 135 ----------KFVKIISTQC------IPNYPDKNLPTILVYR-NGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred ----------EEEEEEhHHh------HhhCCCCCCCEEEEEE-CCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 6677777532 2368999999999995 5555555544 56788998888765
No 70
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.1e-11 Score=125.16 Aligned_cols=93 Identities=19% Similarity=0.321 Sum_probs=76.4
Q ss_pred cCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHh
Q 046627 409 AWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILK 488 (767)
Q Consensus 409 a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~ 488 (767)
+..|.|+|+|+|.|||+|++++|.|..++.+|++. ++.++|++.. .. .+
T Consensus 19 ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~a----------------------------VFlkVdVd~c--~~-ta 67 (288)
T KOG0908|consen 19 AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGA----------------------------VFLKVDVDEC--RG-TA 67 (288)
T ss_pred cCceEEEEEEEecccchHHhhhhHHHHhhhhCccc----------------------------EEEEEeHHHh--hc-hh
Confidence 45899999999999999999999999999999763 6777777643 22 34
Q ss_pred hcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCCCCc
Q 046627 489 SMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNNSHD 534 (767)
Q Consensus 489 ~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~~~~ 534 (767)
.-++|...||+++|. +++....+.| .+...|.+.|+++++++..
T Consensus 68 a~~gV~amPTFiff~-ng~kid~~qG-Ad~~gLe~kv~~~~stsaa 111 (288)
T KOG0908|consen 68 ATNGVNAMPTFIFFR-NGVKIDQIQG-ADASGLEEKVAKYASTSAA 111 (288)
T ss_pred hhcCcccCceEEEEe-cCeEeeeecC-CCHHHHHHHHHHHhccCcc
Confidence 468999999999994 5555677777 7889999999999988765
No 71
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.21 E-value=8e-11 Score=109.50 Aligned_cols=101 Identities=17% Similarity=0.301 Sum_probs=80.4
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
+++++|.||++||++|+.+.|.+.++++. ..++.|+.+.+........+++++++++.+. | .+ ..++..
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~----~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--d--~~---~~~~~~ 88 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSPTVNQLAAD----YPVVSVALRSGDDGAVARFMQKKGYGFPVIN--D--PD---GVISAR 88 (123)
T ss_pred CCEEEEEEECCcChhhhhhChHHHHHHhh----CCEEEEEccCCCHHHHHHHHHHcCCCccEEE--C--CC---cHHHHh
Confidence 68999999999999999999999999887 3467777776544455567778888877653 2 11 235668
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHH
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADVIK 523 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~ 523 (767)
|+|.++||++++++++ ....+.|..+.++|.+
T Consensus 89 ~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 89 WGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred CCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 9999999999998887 7778899999998865
No 72
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.2e-11 Score=134.68 Aligned_cols=111 Identities=24% Similarity=0.491 Sum_probs=93.7
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHH
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYL 463 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v 463 (767)
...++..+|...+ ... ++.++|.||||||+||+++.|.|.++++.+++..
T Consensus 31 ~~~~~~~~~~~~~-~~~----------~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~------------------- 80 (383)
T KOG0191|consen 31 VSELTLDSFFDFL-LKD----------DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKV------------------- 80 (383)
T ss_pred hhhhhccccHHHh-hcc----------CCceEEEEECCCCcchhhhchHHHHHHHHhcCce-------------------
Confidence 4455566777776 332 8899999999999999999999999999998732
Q ss_pred hhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCCCCccc
Q 046627 464 KNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNNSHDLL 536 (767)
Q Consensus 464 ~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~~~~l~ 536 (767)
.++.+||+.+ ..+|..|+|.+|||+++|.++ +.++.|.|.++.+.+..|+.+.........
T Consensus 81 --------~~~~vd~~~~---~~~~~~y~i~gfPtl~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (383)
T KOG0191|consen 81 --------KIGAVDCDEH---KDLCEKYGIQGFPTLKVFRPG-KKPIDYSGPRNAESLAEFLIKELEPSVKKL 141 (383)
T ss_pred --------EEEEeCchhh---HHHHHhcCCccCcEEEEEcCC-CceeeccCcccHHHHHHHHHHhhccccccc
Confidence 7899999887 357889999999999999877 779999999999999999999887766543
No 73
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.20 E-value=8.3e-11 Score=115.42 Aligned_cols=99 Identities=14% Similarity=0.279 Sum_probs=71.7
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
++..||+|||+||++|++++|.+++++++++ ..++.|++|..... .++... |.+. ..+...
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~-----------~fp~~~--~~~~----~~~~~~ 110 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLT-----------GFPDPL--PATP----EVMQTF 110 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCccc-----------cccccc--CCch----HHHHHH
Confidence 5566999999999999999999999999984 56778877654210 122221 2111 112234
Q ss_pred C---CCCcccEEEEEeCCCee-EEEEeCCCCHHHHHHHHHHh
Q 046627 491 T---QREVYPALVLFPAERKN-AISFKGDISVADVIKFIADH 528 (767)
Q Consensus 491 ~---~I~gyPTi~Lf~aggK~-~i~y~G~~t~e~L~~FI~k~ 528 (767)
| ++.++||+++++++|+. ...+.|.++.++|.+.|.+.
T Consensus 111 ~~~~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 111 FPNPRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred hccCCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 4 78999999999988764 44689999999999888763
No 74
>PLN02412 probable glutathione peroxidase
Probab=99.20 E-value=7.8e-11 Score=116.97 Aligned_cols=119 Identities=13% Similarity=0.075 Sum_probs=90.6
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccC-ceeeeccccCC------cccchhh-HHhhccccCcEEEEecCCc-c
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGY-MKSLKNGYKNG------QRDLNGE-YLKNINFKLPRIYLMDCTL-N 481 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~-~~iI~V~~d~~------~~~~~~~-~v~~~~~~~~vIa~ID~t~-N 481 (767)
+|.+||+|||+||++|++.+|.+.+++++|++. ..+++|+++.. ....... .+++++++||++..+|... .
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~~ 108 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGKN 108 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCCC
Confidence 799999999999999999999999999999865 68899988641 1112223 3578899999998766653 2
Q ss_pred cch--HHHhh----cC--CCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhC
Q 046627 482 DCS--LILKS----MT--QREVYPALVLFPAERKNAISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 482 D~~--~~L~~----~~--~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~ 529 (767)
.+. ..+.. .+ +|.+.|+.++++++|+....+.|..+.++|.+.|++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 109 TAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred CCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 111 11111 11 26778999999999999999999999999999988764
No 75
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.19 E-value=1.2e-10 Score=100.30 Aligned_cols=84 Identities=21% Similarity=0.356 Sum_probs=69.0
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
+++++|.||++||++|+.+.+.++++++. .... .++.+|++.+. .++..
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~---------------------------~~~~i~~~~~~---~~~~~ 58 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKV---------------------------KFVKVDVDENP---ELAEE 58 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCc---------------------------eEEEEECCCCh---hHHHh
Confidence 58999999999999999999999999887 2222 67788887642 35668
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHH
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADVIKFIA 526 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~ 526 (767)
|++.++||+++|++| +....+.|..+.+.|.+||+
T Consensus 59 ~~v~~~P~~~~~~~g-~~~~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 59 YGVRSIPTFLFFKNG-KEVDRVVGADPKEELEEFLE 93 (93)
T ss_pred cCcccccEEEEEECC-EEEEEEecCCCHHHHHHHhC
Confidence 999999999999655 56778889999999998873
No 76
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.19 E-value=1.7e-10 Score=113.66 Aligned_cols=109 Identities=12% Similarity=0.255 Sum_probs=89.6
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccC-ceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhh
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGY-MKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKS 489 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~-~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~ 489 (767)
+|+++|+||++||++|++..|.+.++++.|++. ..++.|+++... ......+++++++++.+. |. + ..+.+
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~-~~~~~~~~~~~~~~~~~~--d~--~---~~~~~ 132 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE-LAVKNFVNRYGLTFPVAI--DK--G---RQVID 132 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH-HHHHHHHHHhCCCceEEE--CC--c---chHHH
Confidence 789999999999999999999999999999765 678888887553 233457778888887653 22 1 23456
Q ss_pred cCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHH
Q 046627 490 MTQREVYPALVLFPAERKNAISFKGDISVADVIKFIAD 527 (767)
Q Consensus 490 ~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k 527 (767)
.|++.++|++++++++|+....+.|..+.+++.+++++
T Consensus 133 ~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 133 AYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred HcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 79999999999999888887789999999999999875
No 77
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.18 E-value=4.8e-11 Score=106.26 Aligned_cols=92 Identities=21% Similarity=0.309 Sum_probs=69.2
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHc--cCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHh
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVK--GYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILK 488 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk--~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~ 488 (767)
+|+++|.|||+||++|+++.|.+.+++++|+ ....++.|++|.+.. ...+.+++.+.++..+..-+ .. ...+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~---~~~l~ 75 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEE-EWKKFLKKNNFPWYNVPFDD-DN---NSELL 75 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHH-HHHHHHHTCTTSSEEEETTT-HH---HHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHH-HHHHHHHhcCCCceEEeeCc-ch---HHHHH
Confidence 5899999999999999999999999999999 678999999986543 33556666656655554322 21 23466
Q ss_pred hcCCCCcccEEEEEeCCCe
Q 046627 489 SMTQREVYPALVLFPAERK 507 (767)
Q Consensus 489 ~~~~I~gyPTi~Lf~aggK 507 (767)
..|+|.++|++++++++|+
T Consensus 76 ~~~~i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 76 KKYGINGIPTLVLLDPDGK 94 (95)
T ss_dssp HHTT-TSSSEEEEEETTSB
T ss_pred HHCCCCcCCEEEEECCCCC
Confidence 7899999999999998875
No 78
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=1.1e-11 Score=139.62 Aligned_cols=111 Identities=21% Similarity=0.434 Sum_probs=88.3
Q ss_pred CceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhh
Q 046627 382 DSIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGE 461 (767)
Q Consensus 382 ~~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~ 461 (767)
|+|..|+..||+..| ++. .+-.||.||++|||||++++|.|+++|+.+..-..+
T Consensus 39 D~ii~Ld~~tf~~~v-~~~----------~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~v--------------- 92 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAV-FGS----------RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPV--------------- 92 (606)
T ss_pred CCeEEeehhhhHHHh-ccc----------chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccce---------------
Confidence 569999999999999 654 678899999999999999999999999999875443
Q ss_pred HHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCee---EEEEeCCCCHHHHHHHHHHh
Q 046627 462 YLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKN---AISFKGDISVADVIKFIADH 528 (767)
Q Consensus 462 ~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~---~i~y~G~~t~e~L~~FI~k~ 528 (767)
+.++.|||-...... +|..|+|.+|||+.+|+.+.+. -..+.|.....++..++.+-
T Consensus 93 ---------v~vaaVdCA~~~N~~-lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~ 152 (606)
T KOG1731|consen 93 ---------VRVAAVDCADEENVK-LCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRT 152 (606)
T ss_pred ---------eEEEEeeccchhhhh-hHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHH
Confidence 389999997655444 7999999999999999887432 23345655566666665543
No 79
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.15 E-value=3.8e-11 Score=112.57 Aligned_cols=93 Identities=12% Similarity=0.161 Sum_probs=64.2
Q ss_pred ccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHH
Q 046627 408 SAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLIL 487 (767)
Q Consensus 408 ~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L 487 (767)
...+|+|||.|||+||++|+.|.|.+.++.........+ +...+|..... .
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~f-------------------------v~v~vd~~~~~----~ 66 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNF-------------------------VMVNLEDDEEP----K 66 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcE-------------------------EEEEecCCCCc----h
Confidence 446999999999999999999999999987765433223 22233332211 1
Q ss_pred hhcCCCCc--ccEEEEEeCCCee---EEEEeCCCCHHHHHHHHHHhC
Q 046627 488 KSMTQREV--YPALVLFPAERKN---AISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 488 ~~~~~I~g--yPTi~Lf~aggK~---~i~y~G~~t~e~L~~FI~k~~ 529 (767)
...|++.+ +||++||+++|+. .+...|....+.+..+|....
T Consensus 67 ~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 67 DEEFSPDGGYIPRILFLDPSGDVHPEIINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred hhhcccCCCccceEEEECCCCCCchhhccCCCCccccccCCCHHHHH
Confidence 23577776 9999999877775 335677777777766666543
No 80
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.15 E-value=1.2e-10 Score=113.41 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=82.0
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHcc-CceeeeccccC------CcccchhhHHhh-ccccCcEEEEecCCccc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKN------GQRDLNGEYLKN-INFKLPRIYLMDCTLND 482 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~------~~~~~~~~~v~~-~~~~~~vIa~ID~t~ND 482 (767)
+|+|+|+|||+||+ |++.+|.+++++++|++ ...+++|+++. +......+.+++ +++.+|.+...|.....
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~~ 100 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGEN 100 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCCC
Confidence 89999999999999 99999999999999975 46788888754 122345567776 68999988655433221
Q ss_pred chHHHhhcCC--CCccc-----------EEEEEeCCCeeEEEEeCCCCHHHHHHH
Q 046627 483 CSLILKSMTQ--REVYP-----------ALVLFPAERKNAISFKGDISVADVIKF 524 (767)
Q Consensus 483 ~~~~L~~~~~--I~gyP-----------Ti~Lf~aggK~~i~y~G~~t~e~L~~F 524 (767)
... .|+ +.++| |++|++++|+...+|.|..+.++|.+.
T Consensus 101 ~~~----~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 101 AHP----LYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCh----HHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 111 122 34556 899999999999999999999887654
No 81
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.15 E-value=2.1e-10 Score=120.05 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=89.8
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccC-ceeeeccccCC------cccchhhHH-hhccccCcEEEEecCCccc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGY-MKSLKNGYKNG------QRDLNGEYL-KNINFKLPRIYLMDCTLND 482 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~-~~iI~V~~d~~------~~~~~~~~v-~~~~~~~~vIa~ID~t~ND 482 (767)
+|++||.|||+||++|+.+.|.+++++++|+++ ..+|+|+++.. ........+ +++++.++++..+|.....
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~ 178 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPS 178 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcch
Confidence 799999999999999999999999999999865 68899987531 112334454 4678899987766653211
Q ss_pred c---hHHHhhcCC------CCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhC
Q 046627 483 C---SLILKSMTQ------REVYPALVLFPAERKNAISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 483 ~---~~~L~~~~~------I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~ 529 (767)
. -..++..++ |...||++|++++|+...+|.|..+.++|.+.|++..
T Consensus 179 ~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 179 TAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred hhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 1 111111121 4568999999999999999999999999999998764
No 82
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.14 E-value=9.5e-11 Score=107.36 Aligned_cols=108 Identities=18% Similarity=0.279 Sum_probs=67.6
Q ss_pred ccCCCcEEEEEEcCcChhhHHHHHHHHHHH---HHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccch
Q 046627 408 SAWNEDVVVLFSSSWCGFCQRMELVVREVF---RAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCS 484 (767)
Q Consensus 408 ~a~~K~VLV~FyApWCg~Ck~~~P~leeLa---k~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~ 484 (767)
.+.+|+++|.||+|||++|+++.+.+.+.. ..++....++.++++...... ..-+...+.+.+. ...
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~~ 71 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDES-EAVLDFDGQKNVR---------LSN 71 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHH-HHHHSHTCHSSCH---------HHH
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccc-ccccccccchhhh---------HHH
Confidence 346999999999999999999999998644 344445566666665433110 0000000000000 112
Q ss_pred HHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHH
Q 046627 485 LILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFI 525 (767)
Q Consensus 485 ~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI 525 (767)
..+...++|.++||+++++++|+....+.|.++.++|.++|
T Consensus 72 ~~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 72 KELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 34677899999999999988888788899999999999875
No 83
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.14 E-value=2.3e-10 Score=116.94 Aligned_cols=123 Identities=11% Similarity=0.041 Sum_probs=92.5
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccC-ceeeeccccC------CcccchhhHHhhccccCcEEEEecCCcccc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGY-MKSLKNGYKN------GQRDLNGEYLKNINFKLPRIYLMDCTLNDC 483 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~-~~iI~V~~d~------~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~ 483 (767)
+|+|||+|||+||++|++.+|.+++++++|++. ..+++|+++. +........+++++++|+++..++.+..+.
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~ 118 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGENT 118 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCcc
Confidence 889999999999999999999999999999864 6889998753 223445678889999999988765433211
Q ss_pred ---hHH----HhhcCCC-------CcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCCCC
Q 046627 484 ---SLI----LKSMTQR-------EVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNNSH 533 (767)
Q Consensus 484 ---~~~----L~~~~~I-------~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~~~ 533 (767)
... +...|++ ...|+++|++++|+....+.|..+.+.|.+.|++..+..+
T Consensus 119 ~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~~ 182 (199)
T PTZ00056 119 HELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVKD 182 (199)
T ss_pred CHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 100 1112222 2334899999999988889999999999999998776554
No 84
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.11 E-value=3.3e-10 Score=103.97 Aligned_cols=91 Identities=21% Similarity=0.375 Sum_probs=69.1
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhcccc-CcEEEEecCCcccchHHHhh
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFK-LPRIYLMDCTLNDCSLILKS 489 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~-~~vIa~ID~t~ND~~~~L~~ 489 (767)
+|+++|.||++||++|+.+.|.++++++.+++...++.+. +. ........++++++. ++.+. + ..+..
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~-~~~~~~~~~~~~~~~~~p~~~--~-------~~~~~ 89 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DG-EKAEHQRFLKKHGLEAFPYVL--S-------AELGM 89 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CC-CHHHHHHHHHHhCCCCCcEEe--c-------HHHHh
Confidence 7899999999999999999999999999987777777553 33 223445577778874 77653 1 12456
Q ss_pred cCCCCcccEEEEEeCCCeeEEEEeC
Q 046627 490 MTQREVYPALVLFPAERKNAISFKG 514 (767)
Q Consensus 490 ~~~I~gyPTi~Lf~aggK~~i~y~G 514 (767)
.|++.++|++++++++|+ +.|.|
T Consensus 90 ~~~~~~~P~~~vid~~G~--v~~~~ 112 (114)
T cd02967 90 AYQVSKLPYAVLLDEAGV--IAAKG 112 (114)
T ss_pred hcCCCCcCeEEEECCCCe--EEecc
Confidence 799999999999987775 44444
No 85
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.11 E-value=3.4e-10 Score=106.55 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=77.2
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHcc-CceeeeccccC----CcccchhhHHhhccccCcEEEEecCCcccchH
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKN----GQRDLNGEYLKNINFKLPRIYLMDCTLNDCSL 485 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~----~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~ 485 (767)
+|+++|+||++||++|++.+|.+++++++|++ ...++.|+.+. .......+.++++++.++.+. |.+ .
T Consensus 23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--D~~-----~ 95 (126)
T cd03012 23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVAN--DND-----Y 95 (126)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEE--CCc-----h
Confidence 78999999999999999999999999999985 35777776532 223344567888999998764 322 2
Q ss_pred HHhhcCCCCcccEEEEEeCCCeeEEEEeCC
Q 046627 486 ILKSMTQREVYPALVLFPAERKNAISFKGD 515 (767)
Q Consensus 486 ~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~ 515 (767)
.+...|++.++|++++++++|+....+.|+
T Consensus 96 ~~~~~~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 96 ATWRAYGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred HHHHHhCCCcCCeEEEECCCCcEEEEEecC
Confidence 345679999999999999888877777764
No 86
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.09 E-value=7.3e-10 Score=95.64 Aligned_cols=80 Identities=20% Similarity=0.339 Sum_probs=64.2
Q ss_pred EEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhcCCC
Q 046627 414 VVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQR 493 (767)
Q Consensus 414 VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I 493 (767)
.+..||++||++|+.+.|.++++++.++... .+..+|++.+. .+.+.|++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~---------------------------~~~~vd~~~~~---~~~~~~~v 51 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAV---------------------------EVEYINVMENP---QKAMEYGI 51 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCce---------------------------EEEEEeCccCH---HHHHHcCC
Confidence 3678999999999999999999999886543 55677776542 34567999
Q ss_pred CcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHh
Q 046627 494 EVYPALVLFPAERKNAISFKGDISVADVIKFIADH 528 (767)
Q Consensus 494 ~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~ 528 (767)
.++||+++ +|+ ..+.|..+.+.|.++|.+.
T Consensus 52 ~~vPt~~~---~g~--~~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 52 MAVPAIVI---NGD--VEFIGAPTKEELVEAIKKR 81 (82)
T ss_pred ccCCEEEE---CCE--EEEecCCCHHHHHHHHHhh
Confidence 99999986 444 4788999999999998764
No 87
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.09 E-value=3.8e-10 Score=101.70 Aligned_cols=88 Identities=13% Similarity=0.170 Sum_probs=70.9
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
+++++|.||++||++|+.+.|.++++|+.|++.. .++.+|++.+. .++..
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v---------------------------~f~~vd~~~~~---~~~~~ 61 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKL---------------------------LFVVVDADDFG---RHLEY 61 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeE---------------------------EEEEEchHhhH---HHHHH
Confidence 6899999999999999999999999999998753 67788887653 35668
Q ss_pred CCCC--cccEEEEEeCCCeeEEEEe-CCCCHHHHHHHHHHh
Q 046627 491 TQRE--VYPALVLFPAERKNAISFK-GDISVADVIKFIADH 528 (767)
Q Consensus 491 ~~I~--gyPTi~Lf~aggK~~i~y~-G~~t~e~L~~FI~k~ 528 (767)
|++. ++||+++|+..+.....+. |..+.++|.+||.+.
T Consensus 62 ~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 62 FGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred cCCChhhCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence 9999 9999999977322223344 446999999999864
No 88
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.08 E-value=1.2e-09 Score=104.91 Aligned_cols=105 Identities=19% Similarity=0.212 Sum_probs=83.5
Q ss_pred CCCcEEEEEEcC-cChhhHHHHHHHHHHHHHHccC-ceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHH
Q 046627 410 WNEDVVVLFSSS-WCGFCQRMELVVREVFRAVKGY-MKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLIL 487 (767)
Q Consensus 410 ~~K~VLV~FyAp-WCg~Ck~~~P~leeLak~fk~~-~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L 487 (767)
.+|+++|.||++ ||++|+..+|.+.++++.|+.. ..++.|+.+.+.. ..+.+++++++++.+.. .. ..+
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~--~~~~~~~~~~~~~~~~D--~~-----~~~ 97 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP--VREFLKKYGINFPVLSD--PD-----GAL 97 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH--HHHHHHHTTTTSEEEEE--TT-----SHH
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH--HHHHHHhhCCCceEEec--hH-----HHH
Confidence 389999999999 9999999999999999998765 6888888877765 56677788888888544 21 234
Q ss_pred hhcCCCC---------cccEEEEEeCCCeeEEEEeCCCC--HHHHHH
Q 046627 488 KSMTQRE---------VYPALVLFPAERKNAISFKGDIS--VADVIK 523 (767)
Q Consensus 488 ~~~~~I~---------gyPTi~Lf~aggK~~i~y~G~~t--~e~L~~ 523 (767)
...|++. ++|++++++++|+....+.|... ..++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~ 144 (146)
T PF08534_consen 98 AKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEA 144 (146)
T ss_dssp HHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHH
T ss_pred HHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhh
Confidence 5578988 99999999999998888888666 444443
No 89
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.08 E-value=7.3e-10 Score=107.98 Aligned_cols=115 Identities=12% Similarity=0.134 Sum_probs=86.9
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHcc-CceeeeccccC------CcccchhhHHhh-ccccCcEEEEecCCccc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKN------GQRDLNGEYLKN-INFKLPRIYLMDCTLND 482 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~------~~~~~~~~~v~~-~~~~~~vIa~ID~t~ND 482 (767)
+|.+||.|||+||++|++.+|.+.++++.|++ ...+++|++.. +......+.+++ +++.+|++..+|....+
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~~ 101 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGSE 101 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCCC
Confidence 78899999999999999999999999999986 46788888632 222334566765 79999998865543221
Q ss_pred chHHHhhcC---CCCcccE----EEEEeCCCeeEEEEeCCCCHHHHHHHHHH
Q 046627 483 CSLILKSMT---QREVYPA----LVLFPAERKNAISFKGDISVADVIKFIAD 527 (767)
Q Consensus 483 ~~~~L~~~~---~I~gyPT----i~Lf~aggK~~i~y~G~~t~e~L~~FI~k 527 (767)
..... .| ...++|+ +++++++|+....|.|..+.++|.+.|++
T Consensus 102 ~~~~~--~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~ 151 (153)
T TIGR02540 102 AEPAF--RFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITA 151 (153)
T ss_pred CCcHH--HHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHH
Confidence 11100 12 2346898 99999999999999999999999988875
No 90
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.07 E-value=3e-10 Score=107.92 Aligned_cols=93 Identities=18% Similarity=0.300 Sum_probs=67.2
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccC---ceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHH
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGY---MKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLI 486 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~---~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~ 486 (767)
.+|.+||+|||+||++|+.++|.++++++.+++. ..++.|+++.... .....+++++ .+..+...|- .....
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~-~~~~~~~~~~-~~~~~~~~d~---~~~~~ 90 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEE-SFNEYFSEMP-PWLAVPFEDE---ELREL 90 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHH-HHHHHHhcCC-CeEeeccCcH---HHHHH
Confidence 3899999999999999999999999999999764 5688888876542 3344555544 3333221110 11234
Q ss_pred HhhcCCCCcccEEEEEeCCCe
Q 046627 487 LKSMTQREVYPALVLFPAERK 507 (767)
Q Consensus 487 L~~~~~I~gyPTi~Lf~aggK 507 (767)
++..|+|.++||++|++++|+
T Consensus 91 ~~~~~~v~~iPt~~lid~~G~ 111 (132)
T cd02964 91 LEKQFKVEGIPTLVVLKPDGD 111 (132)
T ss_pred HHHHcCCCCCCEEEEECCCCC
Confidence 566799999999999988776
No 91
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.06 E-value=4.5e-10 Score=131.58 Aligned_cols=93 Identities=17% Similarity=0.276 Sum_probs=74.7
Q ss_pred cCCCcEEEEEEcCcChhhHHHHHHH---HHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCccc-ch
Q 046627 409 AWNEDVVVLFSSSWCGFCQRMELVV---REVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLND-CS 484 (767)
Q Consensus 409 a~~K~VLV~FyApWCg~Ck~~~P~l---eeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND-~~ 484 (767)
..+|+|+|+|||+||++|+.+++.+ .++.+.+++ . ++.++|++.++ ..
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~---------------------------~~v~vDvt~~~~~~ 523 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-T---------------------------VLLQADVTANNAED 523 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-C---------------------------EEEEEECCCCChhh
Confidence 3589999999999999999999875 667776643 1 56778887653 22
Q ss_pred HHHhhcCCCCcccEEEEEeCCCee--EEEEeCCCCHHHHHHHHHHhC
Q 046627 485 LILKSMTQREVYPALVLFPAERKN--AISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 485 ~~L~~~~~I~gyPTi~Lf~aggK~--~i~y~G~~t~e~L~~FI~k~~ 529 (767)
..+.++|++.++||+++|+++|+. ..++.|..+.+++.++|++..
T Consensus 524 ~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 524 VALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 456778999999999999877775 467899999999999998753
No 92
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.04 E-value=1.4e-09 Score=109.17 Aligned_cols=98 Identities=13% Similarity=0.246 Sum_probs=75.5
Q ss_pred EEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhcCCC-
Q 046627 415 VVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQR- 493 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I- 493 (767)
||+|||+||++|++++|.+++++++|+ ..+++|++|.... ..||++. |.+. ..+...|++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~-----------~~fPv~~--dd~~----~~~~~~~g~~ 133 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGD-----------TAFPEAL--PAPP----DVMQTFFPNI 133 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCC-----------CCCceEe--cCch----hHHHHHhCCC
Confidence 778999999999999999999999984 6788888875431 3455654 2111 223446784
Q ss_pred -CcccEEEEEeCCCeeE-EEEeCCCCHHHHHHHHHHhCCC
Q 046627 494 -EVYPALVLFPAERKNA-ISFKGDISVADVIKFIADHGNN 531 (767)
Q Consensus 494 -~gyPTi~Lf~aggK~~-i~y~G~~t~e~L~~FI~k~~~~ 531 (767)
.++||++|++++|+.. ..+.|.++.++|.+.|.+....
T Consensus 134 ~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 134 PVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred CCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 6999999999999875 4689999999999988876644
No 93
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.02 E-value=4.7e-10 Score=105.60 Aligned_cols=86 Identities=21% Similarity=0.312 Sum_probs=59.9
Q ss_pred CCcEEEEEEc-------CcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcc--
Q 046627 411 NEDVVVLFSS-------SWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLN-- 481 (767)
Q Consensus 411 ~K~VLV~FyA-------pWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~N-- 481 (767)
+++|+|.||| +||++|+.+.|.++++++.+++.. .++++|++.+
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v---------------------------~fv~Vdvd~~~~ 73 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDC---------------------------VFIYCDVGDRPY 73 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCC---------------------------EEEEEEcCCccc
Confidence 7899999999 999999999999999999998554 4455555432
Q ss_pred --cchHHHhhcCCCC-cccEEEEEeCCCeeEEEEeCCCCHHHHHHHH
Q 046627 482 --DCSLILKSMTQRE-VYPALVLFPAERKNAISFKGDISVADVIKFI 525 (767)
Q Consensus 482 --D~~~~L~~~~~I~-gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI 525 (767)
+....+...++|. ++||+++|..+++ .+.. .-.+.+.+..|+
T Consensus 74 w~d~~~~~~~~~~I~~~iPT~~~~~~~~~-l~~~-~c~~~~~~~~~~ 118 (119)
T cd02952 74 WRDPNNPFRTDPKLTTGVPTLLRWKTPQR-LVED-ECLQADLVEMFF 118 (119)
T ss_pred ccCcchhhHhccCcccCCCEEEEEcCCce-ecch-hhcCHHHHHHhh
Confidence 1112356678998 9999999954433 2211 123455555554
No 94
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.01 E-value=6.9e-10 Score=103.21 Aligned_cols=96 Identities=15% Similarity=0.143 Sum_probs=79.5
Q ss_pred echHHhhcCCccEEEEeecCCcChhhh-cccCCchhhhhc---CCceEEEE--eCC--hhhhhhhcCC-CCCcEEEEEcC
Q 046627 251 ASDQYYLGHDLTTAKDVKVGEKSSSQI-SMSGDPQLEFQG---FRGSFFFN--DGN--YRLLGALTGG-STIPSLAIVDP 321 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~e~s~~~-e~l~~~~~~A~~---fkgk~~fv--D~~--~~~l~~~~~~-~~~P~l~I~d~ 321 (767)
+|+..|+++++|++++|+ ..++..++ +.+ +++|++ |||+++|+ |++ ...+++|+.. +++|.++|++.
T Consensus 7 e~~~~~~~~~~~~~~l~f-~~~~~~~~~~~~---~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~ 82 (111)
T cd03072 7 ENAEELTEEGLPFLILFH-DKDDLESLKEFK---QAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSF 82 (111)
T ss_pred ccHHHHhcCCCCeEEEEe-cchHHHHHHHHH---HHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcc
Confidence 788899999999999998 66666776 777 999999 99999886 765 3588888644 46999999998
Q ss_pred CCCceeecCCccCCCHHHHHHHHHHHhcCC
Q 046627 322 ISNQHYVASKEATFNYSSMADFLHGFLNGT 351 (767)
Q Consensus 322 ~~~~kY~~~~~~~~t~e~L~~Fi~~~l~Gk 351 (767)
....||.+ ....++.++|.+||++|++|+
T Consensus 83 ~~~~Ky~~-~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 83 RHMYLFPD-FEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred hhcCcCCC-CccccCHHHHHHHHHHHhcCC
Confidence 65578883 234799999999999999995
No 95
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.01 E-value=1.9e-09 Score=96.60 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=76.0
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHc-cCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhh
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVK-GYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKS 489 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk-~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~ 489 (767)
+|.++|.||++||++|++..+.+.++.+.+. ....++.|+++..........+++++.+++.+... ...+..
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 91 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP-------DGELAK 91 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC-------cchHHH
Confidence 7899999999999999999999999999996 35678888887652334456777777666655432 123566
Q ss_pred cCCCCcccEEEEEeCCCeeEEEEeC
Q 046627 490 MTQREVYPALVLFPAERKNAISFKG 514 (767)
Q Consensus 490 ~~~I~gyPTi~Lf~aggK~~i~y~G 514 (767)
.|++.++|++++++++|+....|.|
T Consensus 92 ~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 92 AYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred hcCcCccceEEEECCCCcEEEEecC
Confidence 8999999999999988887777765
No 96
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.00 E-value=1.4e-09 Score=135.52 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=90.0
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccC-ceeeecccc---CCc-ccchhhHHhhccccCcEEEEecCCcccchH
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGY-MKSLKNGYK---NGQ-RDLNGEYLKNINFKLPRIYLMDCTLNDCSL 485 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~-~~iI~V~~d---~~~-~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~ 485 (767)
+|+|||+|||+||++|+.+.|.+++++++|++. ..+++|.++ ... .......++++++.++++. |.. .
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~--D~~-----~ 492 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVN--DGD-----M 492 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEE--CCc-----h
Confidence 899999999999999999999999999999865 577777643 221 1233457788888888763 322 1
Q ss_pred HHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCC
Q 046627 486 ILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGN 530 (767)
Q Consensus 486 ~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~ 530 (767)
.+...|+|.++||++||+++|+...++.|....+.|.++|+....
T Consensus 493 ~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred HHHHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 245579999999999998888888889999999999999988754
No 97
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.00 E-value=1.2e-09 Score=103.13 Aligned_cols=92 Identities=16% Similarity=0.311 Sum_probs=64.5
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHcc---CceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHH
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKG---YMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLIL 487 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~---~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L 487 (767)
+|+|||+|||+||++|+++.|.+.++++.+++ ...++.|++|.... .....++++ ++.. +.....+....+
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~-~~~~~~~~~--~~~~---~~~~~~~~~~~~ 91 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEE-SFNDYFSKM--PWLA---VPFSDRERRSRL 91 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHH-HHHHHHHcC--CeeE---cccCCHHHHHHH
Confidence 78999999999999999999999999999874 35678888876542 222233222 1111 111112222346
Q ss_pred hhcCCCCcccEEEEEeCCCee
Q 046627 488 KSMTQREVYPALVLFPAERKN 508 (767)
Q Consensus 488 ~~~~~I~gyPTi~Lf~aggK~ 508 (767)
++.|+|.++||+++++++|+.
T Consensus 92 ~~~~~v~~~P~~~lid~~G~i 112 (131)
T cd03009 92 NRTFKIEGIPTLIILDADGEV 112 (131)
T ss_pred HHHcCCCCCCEEEEECCCCCE
Confidence 778999999999999888874
No 98
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.99 E-value=4.2e-09 Score=106.08 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=86.2
Q ss_pred CCcE-EEEEEcCcChhhHHHHHHHHHHHHHHccC-ceeeeccccCC--c----ccchhhHHh-hccccCcEEEEecCCcc
Q 046627 411 NEDV-VVLFSSSWCGFCQRMELVVREVFRAVKGY-MKSLKNGYKNG--Q----RDLNGEYLK-NINFKLPRIYLMDCTLN 481 (767)
Q Consensus 411 ~K~V-LV~FyApWCg~Ck~~~P~leeLak~fk~~-~~iI~V~~d~~--~----~~~~~~~v~-~~~~~~~vIa~ID~t~N 481 (767)
+|+| |+.|||+||++|++.+|.+++++++|++. ..+++|+++.. . .......+. +++++||++..+|....
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~ 119 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGE 119 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCCC
Confidence 6654 56679999999999999999999999864 68889987531 1 123334544 67899999877665432
Q ss_pred c---chHHHhh--------cCCCCcccE---EEEEeCCCeeEEEEeCCCCHHHHHHHHHHhC
Q 046627 482 D---CSLILKS--------MTQREVYPA---LVLFPAERKNAISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 482 D---~~~~L~~--------~~~I~gyPT---i~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~ 529 (767)
. ....+.. .+++.++|+ +++++++|+....|.|..+.+.+.+.|.+..
T Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 120 NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 1 1111111 236779994 6999999998889999999999998887754
No 99
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.95 E-value=3.8e-09 Score=112.92 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=75.7
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhh
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKS 489 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~ 489 (767)
.++.+||+|||+||++|+.+.|.++++++.+. ..++.|++|..... .++.+ + .+ ..+..
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~-----------~fp~~---~--~d---~~la~ 223 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLP-----------GFPNA---R--PD---AGQAQ 223 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccc-----------cCCcc---c--CC---HHHHH
Confidence 37899999999999999999999999999985 56777777654310 12222 1 11 22456
Q ss_pred cCCCCcccEEEEEeCC-CeeEEEEeCCCCHHHHHHHHHHhCC
Q 046627 490 MTQREVYPALVLFPAE-RKNAISFKGDISVADVIKFIADHGN 530 (767)
Q Consensus 490 ~~~I~gyPTi~Lf~ag-gK~~i~y~G~~t~e~L~~FI~k~~~ 530 (767)
.++|.++||++|++.+ ++......|..+.++|.+.|...++
T Consensus 224 ~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 224 QLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred HcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 8999999999999874 4444456799999999999987655
No 100
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.94 E-value=3.9e-09 Score=108.88 Aligned_cols=91 Identities=19% Similarity=0.295 Sum_probs=70.0
Q ss_pred CCcEEEEEEc---CcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHH
Q 046627 411 NEDVVVLFSS---SWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLIL 487 (767)
Q Consensus 411 ~K~VLV~FyA---pWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L 487 (767)
+...++.|++ +||++|+.+.|.++++++.+.. ..+ .+..+|.+.+ ..+
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~-~~i-------------------------~~v~vd~~~~---~~l 69 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK-LKL-------------------------EIYDFDTPED---KEE 69 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC-ceE-------------------------EEEecCCccc---HHH
Confidence 4445667888 9999999999999999998842 211 4556665544 246
Q ss_pred hhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCC
Q 046627 488 KSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGN 530 (767)
Q Consensus 488 ~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~ 530 (767)
+.+|+|.++||+++|+.|.....+|.|..+.++|.+||+...+
T Consensus 70 ~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 70 AEKYGVERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDIVR 112 (215)
T ss_pred HHHcCCCccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHHHH
Confidence 7789999999999996554334689999999999999998753
No 101
>PTZ00062 glutaredoxin; Provisional
Probab=98.91 E-value=4.7e-09 Score=107.63 Aligned_cols=81 Identities=12% Similarity=0.247 Sum_probs=68.4
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
.+.++++|||+||++|+.|.|.+.++++.|.. . .++.+|++
T Consensus 17 ~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~---------------------------~F~~V~~d----------- 57 (204)
T PTZ00062 17 TGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-L---------------------------EFYVVNLA----------- 57 (204)
T ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-c---------------------------EEEEEccc-----------
Confidence 47789999999999999999999999998864 2 67777764
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCCC
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNNS 532 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~~ 532 (767)
|+|.++||++|| ++|+..-++.| -+...|..+|.++.+..
T Consensus 58 ~~V~~vPtfv~~-~~g~~i~r~~G-~~~~~~~~~~~~~~~~~ 97 (204)
T PTZ00062 58 DANNEYGVFEFY-QNSQLINSLEG-CNTSTLVSFIRGWAQKG 97 (204)
T ss_pred cCcccceEEEEE-ECCEEEeeeeC-CCHHHHHHHHHHHcCCC
Confidence 689999999999 46677778887 45889999999988753
No 102
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.89 E-value=1.5e-08 Score=102.68 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=75.1
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
+|+++|+|||+||++|+++.|.+.++++.+. ..++.++.+ ......+.++++++.++.+. .+ ..+...
T Consensus 74 gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~--~~~~~~~~~~~~~~~~~~~~-~~-------~~i~~~ 141 (189)
T TIGR02661 74 GRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDG--TPAEHRRFLKDHELGGERYV-VS-------AEIGMA 141 (189)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCC--CHHHHHHHHHhcCCCcceee-ch-------hHHHHh
Confidence 7899999999999999999999999987653 345666632 23345668888888766543 11 234557
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCC-CCHHHHHHHHHHh
Q 046627 491 TQREVYPALVLFPAERKNAISFKGD-ISVADVIKFIADH 528 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~-~t~e~L~~FI~k~ 528 (767)
|++.++|+.++++++|+. .+.|. .+.+.+.+.|+..
T Consensus 142 y~v~~~P~~~lID~~G~I--~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 142 FQVGKIPYGVLLDQDGKI--RAKGLTNTREHLESLLEAD 178 (189)
T ss_pred ccCCccceEEEECCCCeE--EEccCCCCHHHHHHHHHHH
Confidence 999999999999888864 34454 3556777776643
No 103
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.87 E-value=8.8e-09 Score=97.76 Aligned_cols=77 Identities=18% Similarity=0.203 Sum_probs=53.1
Q ss_pred cccCCCcEEEEEEcCcChhhHHHHHHH---HHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcc-c
Q 046627 407 FSAWNEDVVVLFSSSWCGFCQRMELVV---REVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLN-D 482 (767)
Q Consensus 407 a~a~~K~VLV~FyApWCg~Ck~~~P~l---eeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~N-D 482 (767)
+.+.+|+|||.|||+||+.|+.|.+.. .++++.++.+. ++.++|.+.+ +
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~f---------------------------v~VkvD~~~~~~ 63 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENF---------------------------VPIKVDREERPD 63 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCE---------------------------EEEEEeCCcCcH
Confidence 345699999999999999999998743 46777665543 3344555442 1
Q ss_pred ch----HHHhhcCCCCcccEEEEEeCCCeeEE
Q 046627 483 CS----LILKSMTQREVYPALVLFPAERKNAI 510 (767)
Q Consensus 483 ~~----~~L~~~~~I~gyPTi~Lf~aggK~~i 510 (767)
.. ......|++.|+||++|++++|+...
T Consensus 64 ~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~ 95 (124)
T cd02955 64 VDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFF 95 (124)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCEEe
Confidence 11 11122478999999999999887543
No 104
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.84 E-value=1.6e-08 Score=102.12 Aligned_cols=111 Identities=13% Similarity=0.018 Sum_probs=78.7
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHH-Hcc--CceeeeccccCCcc---cchhhHHhhccccCcE-EEEecCCccc
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRA-VKG--YMKSLKNGYKNGQR---DLNGEYLKNINFKLPR-IYLMDCTLND 482 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~-fk~--~~~iI~V~~d~~~~---~~~~~~v~~~~~~~~v-Ia~ID~t~ND 482 (767)
.+|.+||+|||+||++|+..+|.+++++++ |.- ....++||+|+... ...++.+++.+..+|. ...+|-.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~--- 134 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK--- 134 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc---
Confidence 399999999999999999999999999653 321 12337888876522 1233445555666661 1223321
Q ss_pred chHHHhhcCCCCcccEE-EEEeCCCeeEEEEeCCCCHHHHHHHH
Q 046627 483 CSLILKSMTQREVYPAL-VLFPAERKNAISFKGDISVADVIKFI 525 (767)
Q Consensus 483 ~~~~L~~~~~I~gyPTi-~Lf~aggK~~i~y~G~~t~e~L~~FI 525 (767)
..+...|++.++|+. ++++++|+....+.|..+.+++.+++
T Consensus 135 --g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 135 --GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred --chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 223457999999888 89999999999999999988776643
No 105
>PHA02125 thioredoxin-like protein
Probab=98.81 E-value=2.5e-08 Score=86.00 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=50.8
Q ss_pred EEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhcCCCC
Q 046627 415 VVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQRE 494 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~ 494 (767)
+|.|||+||++|+.+.|.|+++. + .++++|++.+. .++.+|+|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--~-------------------------------~~~~vd~~~~~---~l~~~~~v~ 45 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--Y-------------------------------TYVDVDTDEGV---ELTAKHHIR 45 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--h-------------------------------eEEeeeCCCCH---HHHHHcCCc
Confidence 78999999999999999987652 1 34566665542 467789999
Q ss_pred cccEEEEEeCCCeeEEEEeCC-CCHHHHHHHH
Q 046627 495 VYPALVLFPAERKNAISFKGD-ISVADVIKFI 525 (767)
Q Consensus 495 gyPTi~Lf~aggK~~i~y~G~-~t~e~L~~FI 525 (767)
++||++ .++....+.|. ++..+|.+-|
T Consensus 46 ~~PT~~----~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 46 SLPTLV----NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred eeCeEE----CCEEEEEEeCCCCcHHHHHHHh
Confidence 999987 34545577783 4556665543
No 106
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.79 E-value=4.4e-08 Score=97.04 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=85.7
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHcc-CceeeeccccCC------cccchhhHHhhccccCcEEEEecCCcccc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNG------QRDLNGEYLKNINFKLPRIYLMDCTLNDC 483 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~------~~~~~~~~v~~~~~~~~vIa~ID~t~ND~ 483 (767)
++++||+||++||+.|.+..+.+.++++.|++ +..+++|+++.. .......++++++++++.+. |-.
T Consensus 25 ~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~--D~~---- 98 (171)
T cd02969 25 GKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLL--DET---- 98 (171)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEE--CCc----
Confidence 78999999999999999999999999999974 578899988763 33445567778888877664 321
Q ss_pred hHHHhhcCCCCcccEEEEEeCCCeeEEEE---------eCCCCHHHHHHHHHHhCC
Q 046627 484 SLILKSMTQREVYPALVLFPAERKNAISF---------KGDISVADVIKFIADHGN 530 (767)
Q Consensus 484 ~~~L~~~~~I~gyPTi~Lf~aggK~~i~y---------~G~~t~e~L~~FI~k~~~ 530 (767)
..+.+.|++...|++++++++|+..... .+..+.+++.+-|+....
T Consensus 99 -~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 99 -QEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred -hHHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 2355679999999999998888754332 123466788888877543
No 107
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.77 E-value=2.9e-08 Score=85.94 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=54.0
Q ss_pred EEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhcCCCC
Q 046627 415 VVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQRE 494 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~ 494 (767)
-|.|||+||++|+.+.|.++++++.+.... .+.++| ..+ ....+++.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~---------------------------~~~~v~--~~~----~a~~~~v~ 48 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDA---------------------------EFEKVT--DMN----EILEAGVT 48 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCe---------------------------EEEEeC--CHH----HHHHcCCC
Confidence 378999999999999999999999987543 344444 111 13468999
Q ss_pred cccEEEEEeCCCeeEEEEeCC-CCHHHHHHHH
Q 046627 495 VYPALVLFPAERKNAISFKGD-ISVADVIKFI 525 (767)
Q Consensus 495 gyPTi~Lf~aggK~~i~y~G~-~t~e~L~~FI 525 (767)
++||+++ +|+.. +.|. .+.+.|.++|
T Consensus 49 ~vPti~i---~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 49 ATPGVAV---DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred cCCEEEE---CCEEE--EEeccCCHHHHHHHh
Confidence 9999999 55533 7774 4668888776
No 108
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.76 E-value=5.3e-08 Score=90.34 Aligned_cols=95 Identities=11% Similarity=0.080 Sum_probs=74.3
Q ss_pred cccCCCcEEEEEEcCcChhhHHHHHH-H--HHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccc
Q 046627 407 FSAWNEDVVVLFSSSWCGFCQRMELV-V--REVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDC 483 (767)
Q Consensus 407 a~a~~K~VLV~FyApWCg~Ck~~~P~-l--eeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~ 483 (767)
|...+|.++|+|+++||+.|+.|... | .++.+.++.+. ++..+|.+..+.
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~---------------------------v~~~~d~~~~e~ 65 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENF---------------------------IFWQCDIDSSEG 65 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCE---------------------------EEEEecCCCccH
Confidence 34569999999999999999999874 3 55666665432 455566654333
Q ss_pred hHHHhhcCCCCcccEEEEEeC-CCeeEEEEeCCCCHHHHHHHHHHhC
Q 046627 484 SLILKSMTQREVYPALVLFPA-ERKNAISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 484 ~~~L~~~~~I~gyPTi~Lf~a-ggK~~i~y~G~~t~e~L~~FI~k~~ 529 (767)
. .+...|++.++|+++++.. +++...++.|..+.+++...|++..
T Consensus 66 ~-~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 66 Q-RFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred H-HHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 3 3567899999999999988 7888889999999999999998754
No 109
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.74 E-value=3.8e-07 Score=90.27 Aligned_cols=173 Identities=18% Similarity=0.291 Sum_probs=126.5
Q ss_pred hhhcccCCchhhhhcCCceEEEEeC-ChhhhhhhcCCCCCcEEEEEcCCCCceeecCCccCCCHHHHHHHHHHHhcCCcC
Q 046627 275 SQISMSGDPQLEFQGFRGSFFFNDG-NYRLLGALTGGSTIPSLAIVDPISNQHYVASKEATFNYSSMADFLHGFLNGTLL 353 (767)
Q Consensus 275 ~~~e~l~~~~~~A~~fkgk~~fvD~-~~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~l~Gkl~ 353 (767)
+.++.+ .++|+.+++.+.|.-. +..+.+.+ +.+. |+++++....+.+..|.+. .++.+.|.+||....-
T Consensus 7 ~~~~~f---~~~A~~~~~~~~F~~~~~~~~~~~~-~~~~-p~i~~~k~~~~~~~~y~~~-~~~~~~l~~fI~~~~~---- 76 (184)
T PF13848_consen 7 ELFEIF---EEAAEKLKGDYQFGVTFNEELAKKY-GIKE-PTIVVYKKFDEKPVVYDGD-KFTPEELKKFIKKNSF---- 76 (184)
T ss_dssp HHHHHH---HHHHHHHTTTSEEEEEE-HHHHHHC-TCSS-SEEEEEECTTTSEEEESSS-TTSHHHHHHHHHHHSS----
T ss_pred HHHHHH---HHHHHhCcCCcEEEEEcHHHHHHHh-CCCC-CcEEEeccCCCCceecccc-cCCHHHHHHHHHHhcc----
Confidence 334555 8999999988777533 45566656 3344 9999999855556667643 5899999999988421
Q ss_pred CCcccccccccccCCCCCCccccCccccCceeeecccccccccccccCCcccccccCCCc-EEEEEEcCcChhhHHHHHH
Q 046627 354 PYQRSESILQISREATHPPFVNMDFHEVDSIPRVTVHSFSDLVGLNQSDNENAFSAWNED-VVVLFSSSWCGFCQRMELV 432 (767)
Q Consensus 354 p~~kSe~~p~~~~~~~~p~fvn~df~~~~~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~-VLV~FyApWCg~Ck~~~P~ 432 (767)
| .|..++..|+..+.. . +++ +++.|+..-+..+..+...
T Consensus 77 --------P--------------------~v~~~t~~n~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~ 116 (184)
T PF13848_consen 77 --------P--------------------LVPELTPENFEKLFS-S-----------PKPPVLILFDNKDNESTEAFKKE 116 (184)
T ss_dssp --------T--------------------SCEEESTTHHHHHHS-T-----------SSEEEEEEEETTTHHHHHHHHHH
T ss_pred --------c--------------------cccccchhhHHHHhc-C-----------CCceEEEEEEcCCchhHHHHHHH
Confidence 1 168999999999882 1 444 7888887778889999999
Q ss_pred HHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhcCCCC--cccEEEEEeCCC-eeE
Q 046627 433 VREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQRE--VYPALVLFPAER-KNA 509 (767)
Q Consensus 433 leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~--gyPTi~Lf~agg-K~~ 509 (767)
++++|+.++++. .++.+|++.+ .. +...+++. .+|+++++.... +..
T Consensus 117 l~~~a~~~~~~~---------------------------~f~~~d~~~~--~~-~~~~~~i~~~~~P~~vi~~~~~~~~~ 166 (184)
T PF13848_consen 117 LQDIAKKFKGKI---------------------------NFVYVDADDF--PR-LLKYFGIDEDDLPALVIFDSNKGKYY 166 (184)
T ss_dssp HHHHHHCTTTTS---------------------------EEEEEETTTT--HH-HHHHTTTTTSSSSEEEEEETTTSEEE
T ss_pred HHHHHHhcCCeE---------------------------EEEEeehHHh--HH-HHHHcCCCCccCCEEEEEECCCCcEE
Confidence 999999998753 6777888733 23 44578887 999999997433 333
Q ss_pred EEEeCCCCHHHHHHHHHH
Q 046627 510 ISFKGDISVADVIKFIAD 527 (767)
Q Consensus 510 i~y~G~~t~e~L~~FI~k 527 (767)
..+.|..+.++|.+||++
T Consensus 167 ~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 167 YLPEGEITPESIEKFLND 184 (184)
T ss_dssp E--SSCGCHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHhcC
Confidence 345899999999999974
No 110
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.64 E-value=1.5e-07 Score=89.39 Aligned_cols=106 Identities=10% Similarity=0.072 Sum_probs=83.3
Q ss_pred CCcEEEEEE-cCcChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHh
Q 046627 411 NEDVVVLFS-SSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILK 488 (767)
Q Consensus 411 ~K~VLV~Fy-ApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~ 488 (767)
+|.++|.|| +.||+.|.++.|.+.++++.++. ...++.|+.+.. ......+++++++++.+. |.. ..+.
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~--~~~~~~~~~~~~~~~~l~--D~~-----~~~~ 93 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSV--ESHAKFAEKYGLPFPLLS--DPD-----GKLA 93 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHhCCCceEEE--CCc-----cHHH
Confidence 789999999 58999999999999999999975 468888887643 345577888888888764 322 1245
Q ss_pred hcCCCCcc---------cEEEEEeCCCeeEEEEeCCCCHHHHHHHH
Q 046627 489 SMTQREVY---------PALVLFPAERKNAISFKGDISVADVIKFI 525 (767)
Q Consensus 489 ~~~~I~gy---------PTi~Lf~aggK~~i~y~G~~t~e~L~~FI 525 (767)
..|++... |++++++++|+....|.|....+++.+-+
T Consensus 94 ~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 94 KAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred HHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 56898888 99999999999888889988777666543
No 111
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.57 E-value=4.6e-07 Score=88.10 Aligned_cols=107 Identities=12% Similarity=0.059 Sum_probs=78.8
Q ss_pred CCcEEEEEEcC-cChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHh
Q 046627 411 NEDVVVLFSSS-WCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILK 488 (767)
Q Consensus 411 ~K~VLV~FyAp-WCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~ 488 (767)
+|.+||.||+. ||+.|....+.+.++++.+++ ...+++|+.+.. ......+++++++++.+. |-. . .+.
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~--~~~~~~~~~~~~~~~~l~--D~~-~----~~~ 100 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKP--EKLSRFAEKELLNFTLLS--DED-H----QVA 100 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHhCCCCeEEE--CCC-c----hHH
Confidence 78999999986 688899999999999999975 468889988743 444567888888888764 322 1 234
Q ss_pred hcCCCCcc------------cEEEEEeCCCeeEEEEeCCCCHH---HHHHHHH
Q 046627 489 SMTQREVY------------PALVLFPAERKNAISFKGDISVA---DVIKFIA 526 (767)
Q Consensus 489 ~~~~I~gy------------PTi~Lf~aggK~~i~y~G~~t~e---~L~~FI~ 526 (767)
+.|++... |++++++++|+....|.|....+ +++++++
T Consensus 101 ~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~~~~ 153 (154)
T PRK09437 101 EQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLDYLK 153 (154)
T ss_pred HHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHHHHh
Confidence 46776543 78899999998888888755444 4555543
No 112
>smart00594 UAS UAS domain.
Probab=98.57 E-value=3.4e-07 Score=86.37 Aligned_cols=101 Identities=12% Similarity=0.132 Sum_probs=74.3
Q ss_pred ccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHH---HHHHHHHccCceeeeccccCCcccchhhHHhh
Q 046627 389 VHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVV---REVFRAVKGYMKSLKNGYKNGQRDLNGEYLKN 465 (767)
Q Consensus 389 ~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~l---eeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~ 465 (767)
..+|++.+. .+...+|.++|+|+++||+.|+.+...+ .++.+.++.+.
T Consensus 13 ~gs~~~a~~--------~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~f--------------------- 63 (122)
T smart00594 13 QGSLEAAKQ--------EASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENF--------------------- 63 (122)
T ss_pred eCCHHHHHH--------HHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCE---------------------
Confidence 346666661 1334589999999999999999998754 45666665432
Q ss_pred ccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCC--e---eEEEEeCCCCHHHHHHHH
Q 046627 466 INFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAER--K---NAISFKGDISVADVIKFI 525 (767)
Q Consensus 466 ~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~agg--K---~~i~y~G~~t~e~L~~FI 525 (767)
++..+|.+..+.. .++..|++.+||+++++...+ + ...+..|..+.++|+.+|
T Consensus 64 ------v~~~~dv~~~eg~-~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 64 ------IFWQVDVDTSEGQ-RVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ------EEEEecCCChhHH-HHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 5556677665543 467889999999999996655 2 245688999999999886
No 113
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.56 E-value=1.3e-07 Score=90.39 Aligned_cols=77 Identities=12% Similarity=0.167 Sum_probs=48.6
Q ss_pred cccCCCcEEEEEEcCcChhhHHHHHHH---HHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccc
Q 046627 407 FSAWNEDVVVLFSSSWCGFCQRMELVV---REVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDC 483 (767)
Q Consensus 407 a~a~~K~VLV~FyApWCg~Ck~~~P~l---eeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~ 483 (767)
+...+|+|||.|++.||++|++|...+ .++.+..+.+. +.|. ...|.+....
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~F--v~V~-----------------------l~~d~td~~~ 73 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDF--IMLN-----------------------LVHETTDKNL 73 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCe--EEEE-----------------------EEeccCCCCc
Confidence 345699999999999999999999875 44555554432 1111 1122221111
Q ss_pred hHHHhhcCCCCcccEEEEEeCCCeeEEEEeC
Q 046627 484 SLILKSMTQREVYPALVLFPAERKNAISFKG 514 (767)
Q Consensus 484 ~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G 514 (767)
. ..+ .++||++|++++++...+..|
T Consensus 74 ~-----~~g-~~vPtivFld~~g~vi~~i~G 98 (130)
T cd02960 74 S-----PDG-QYVPRIMFVDPSLTVRADITG 98 (130)
T ss_pred C-----ccC-cccCeEEEECCCCCCcccccc
Confidence 1 123 689999999988875544444
No 114
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.56 E-value=4.2e-07 Score=84.26 Aligned_cols=89 Identities=21% Similarity=0.357 Sum_probs=72.6
Q ss_pred CCcEEEEEEcC-cChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHh
Q 046627 411 NEDVVVLFSSS-WCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILK 488 (767)
Q Consensus 411 ~K~VLV~FyAp-WCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~ 488 (767)
+|++||.||++ ||++|+...+.+.+++++|+. ...++.|+.+... .....+++++++++.+...+ ..+.
T Consensus 25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~--~~~~~~~~~~~~~~~~~D~~-------~~~~ 95 (124)
T PF00578_consen 25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPE--EIKQFLEEYGLPFPVLSDPD-------GELA 95 (124)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHH--HHHHHHHHHTCSSEEEEETT-------SHHH
T ss_pred CCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccccc--chhhhhhhhccccccccCcc-------hHHH
Confidence 89999999999 999999999999999999986 4688888886544 44567788888888886522 2345
Q ss_pred hcCCCC------cccEEEEEeCCCee
Q 046627 489 SMTQRE------VYPALVLFPAERKN 508 (767)
Q Consensus 489 ~~~~I~------gyPTi~Lf~aggK~ 508 (767)
..|++. .+|++++++++|+.
T Consensus 96 ~~~~~~~~~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 96 KAFGIEDEKDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp HHTTCEETTTSEESEEEEEEETTSBE
T ss_pred HHcCCccccCCceEeEEEEECCCCEE
Confidence 568888 99999999998874
No 115
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.54 E-value=1.6e-07 Score=87.40 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=69.2
Q ss_pred echHHhhcCCccEEEE--eec-CCcChhhh-cccCCchhhhhcCC-ceEEEE--eCC--hhhhhhhcC-CCC--CcEEEE
Q 046627 251 ASDQYYLGHDLTTAKD--VKV-GEKSSSQI-SMSGDPQLEFQGFR-GSFFFN--DGN--YRLLGALTG-GST--IPSLAI 318 (767)
Q Consensus 251 etf~~~~~~~~p~~~~--f~~-~~e~s~~~-e~l~~~~~~A~~fk-gk~~fv--D~~--~~~l~~~~~-~~~--~P~l~I 318 (767)
+|+..|+..+++++|+ +++ ..++...+ +.+ +++|++|| |+++|+ |++ .+++++|+. .++ +|+++|
T Consensus 7 en~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i 83 (111)
T cd03073 7 DNRAQFTKKPLVVAYYNVDYSKNPKGTNYWRNRV---LKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAI 83 (111)
T ss_pred chHHHhccCCeEEEEEeccccCChhHHHHHHHHH---HHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEE
Confidence 6788888777766665 222 33445555 777 99999999 799886 654 468898854 345 999999
Q ss_pred EcCCCCceeecCCccCC-CHHHHHHHHHHHh
Q 046627 319 VDPISNQHYVASKEATF-NYSSMADFLHGFL 348 (767)
Q Consensus 319 ~d~~~~~kY~~~~~~~~-t~e~L~~Fi~~~l 348 (767)
++..+ +||.+++ ++ +.++|.+|+++|+
T Consensus 84 ~~~~~-~KY~~~~--~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 84 RTAKG-KKYVMEE--EFSDVDALEEFLEDFF 111 (111)
T ss_pred EeCCC-CccCCCc--ccCCHHHHHHHHHHhC
Confidence 99654 8998754 57 9999999999984
No 116
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.51 E-value=3.7e-07 Score=92.32 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=81.6
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccC-ceeeeccccC------CcccchhhHHh-hccccCcEEEEecCCccc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGY-MKSLKNGYKN------GQRDLNGEYLK-NINFKLPRIYLMDCTLND 482 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~-~~iI~V~~d~------~~~~~~~~~v~-~~~~~~~vIa~ID~t~ND 482 (767)
+|+|||.|||+||++|+ ..|.+++++++|++. ..++++.+++ +......+.++ ++++.|+++.++|+.-..
T Consensus 25 GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~Fpv~~k~dvnG~~ 103 (183)
T PRK10606 25 GNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEVNGEG 103 (183)
T ss_pred CCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCCceeEEEEccCCCC
Confidence 89999999999999997 588999999999864 6788988864 22233455665 688999999999986432
Q ss_pred ---chHHHhhcCCCCcc----------------c----------EEEEEeCCCeeEEEEeCCCCHHH--HHHHHHHhC
Q 046627 483 ---CSLILKSMTQREVY----------------P----------ALVLFPAERKNAISFKGDISVAD--VIKFIADHG 529 (767)
Q Consensus 483 ---~~~~L~~~~~I~gy----------------P----------Ti~Lf~aggK~~i~y~G~~t~e~--L~~FI~k~~ 529 (767)
+-.-|+......+. | +-+|++++|+.+.+|.......+ |.+.|++.+
T Consensus 104 ~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~~p~~~~i~~~i~~~l 181 (183)
T PRK10606 104 RHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMTPEDPIVMESIKLAL 181 (183)
T ss_pred CCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCCCCCHHHHHHHHHHHh
Confidence 33333332211000 1 25677888887778876554444 888886543
No 117
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.51 E-value=6.9e-07 Score=88.76 Aligned_cols=107 Identities=8% Similarity=-0.029 Sum_probs=77.3
Q ss_pred CCcEEEEEEcCc-ChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccC-cEEEEecCCcccchHHHh
Q 046627 411 NEDVVVLFSSSW-CGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKL-PRIYLMDCTLNDCSLILK 488 (767)
Q Consensus 411 ~K~VLV~FyApW-Cg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~-~vIa~ID~t~ND~~~~L~ 488 (767)
+|.++|+||++| |++|.+.+|.+.++++.+. ...+++|+.|.. ......++++++.+ +.+. |... ..++
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~--~~~~~f~~~~~~~~~~~ls--D~~~----~~~~ 114 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLP--FAQKRFCGAEGLENVITLS--DFRD----HSFG 114 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCH--HHHHHHHHhCCCCCceEee--cCCc----cHHH
Confidence 789999999999 9999999999999999994 678899987653 22345677776663 3332 2111 1345
Q ss_pred hcCCCCccc---------EEEEEeCCCeeEEEEe-----CCCCHHHHHHHHH
Q 046627 489 SMTQREVYP---------ALVLFPAERKNAISFK-----GDISVADVIKFIA 526 (767)
Q Consensus 489 ~~~~I~gyP---------Ti~Lf~aggK~~i~y~-----G~~t~e~L~~FI~ 526 (767)
..|++...| ++++++++|+....+. .....+.++++|+
T Consensus 115 ~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 115 KAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred HHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 578888777 9999998888655442 2346778887775
No 118
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.49 E-value=2.3e-07 Score=106.46 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=72.7
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHH-HHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccc-hHHH
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVR-EVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDC-SLIL 487 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~le-eLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~-~~~L 487 (767)
.+|+|+|+|||.||--||.+++..- .....++-. -++..+.|.|+|+. ...+
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~--------------------------~~vlLqaDvT~~~p~~~~l 526 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ--------------------------DVVLLQADVTANDPAITAL 526 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC--------------------------CeEEEEeeecCCCHHHHHH
Confidence 4579999999999999999998753 222222211 12788999998743 2334
Q ss_pred hhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhC
Q 046627 488 KSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 488 ~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~ 529 (767)
-++|++-+.|++++|+++|+++....|.++.+.+.++|++..
T Consensus 527 Lk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 527 LKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred HHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 567999999999999989888777999999999999998753
No 119
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.47 E-value=1.4e-07 Score=93.24 Aligned_cols=105 Identities=18% Similarity=0.170 Sum_probs=79.3
Q ss_pred eeeEEecccccce-----echHHhhcCCccEEEE-eecC-CcChhhh-cccCCchhhhhcCCceEEE--EeCC--hhhhh
Q 046627 238 KVSVDTKEQLIPE-----ASDQYYLGHDLTTAKD-VKVG-EKSSSQI-SMSGDPQLEFQGFRGSFFF--NDGN--YRLLG 305 (767)
Q Consensus 238 ~t~fi~sn~lPlV-----etf~~~~~~~~p~~~~-f~~~-~e~s~~~-e~l~~~~~~A~~fkgk~~f--vD~~--~~~l~ 305 (767)
+.+||..+.+|+| +++..+++.++|.+++ |... .+....+ +.+ +++|+++++++.| +|++ .++++
T Consensus 67 l~~fI~~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~a~~~~~~~~f~~~d~~~~~~~~~ 143 (184)
T PF13848_consen 67 LKKFIKKNSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKEL---QDIAKKFKGKINFVYVDADDFPRLLK 143 (184)
T ss_dssp HHHHHHHHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHH---HHHHHCTTTTSEEEEEETTTTHHHHH
T ss_pred HHHHHHHhccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHH---HHHHHhcCCeEEEEEeehHHhHHHHH
Confidence 6799999999999 7888999999984444 4432 2333444 666 8999999998666 4775 67888
Q ss_pred hhcC-CCCCcEEEEEcCCCCceeecCCccCCCHHHHHHHHHH
Q 046627 306 ALTG-GSTIPSLAIVDPISNQHYVASKEATFNYSSMADFLHG 346 (767)
Q Consensus 306 ~~~~-~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~ 346 (767)
+|+. ...+|+++|++...+.+|.++ ..+++.++|.+|+++
T Consensus 144 ~~~i~~~~~P~~vi~~~~~~~~~~~~-~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 144 YFGIDEDDLPALVIFDSNKGKYYYLP-EGEITPESIEKFLND 184 (184)
T ss_dssp HTTTTTSSSSEEEEEETTTSEEEE---SSCGCHHHHHHHHHH
T ss_pred HcCCCCccCCEEEEEECCCCcEEcCC-CCCCCHHHHHHHhcC
Confidence 8843 358999999998776544444 568999999999975
No 120
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.46 E-value=3.1e-07 Score=80.34 Aligned_cols=67 Identities=24% Similarity=0.425 Sum_probs=47.5
Q ss_pred cccCCCcEEEEEEcCcChhhHHHHHHH---HHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccc
Q 046627 407 FSAWNEDVVVLFSSSWCGFCQRMELVV---REVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDC 483 (767)
Q Consensus 407 a~a~~K~VLV~FyApWCg~Ck~~~P~l---eeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~ 483 (767)
|.+.+|++||.|+|+||++|+.|...+ .++.+.+..+. +...+|.+..+-
T Consensus 13 A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~f---------------------------v~v~vd~~~~~~ 65 (82)
T PF13899_consen 13 AKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNF---------------------------VLVKVDVDDEDP 65 (82)
T ss_dssp HHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCS---------------------------EEEEEETTTHHH
T ss_pred HHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCE---------------------------EEEEEEcCCCCh
Confidence 345699999999999999999999887 45666555433 566777765543
Q ss_pred hHHHhhcCCCCcccEEEEEeC
Q 046627 484 SLILKSMTQREVYPALVLFPA 504 (767)
Q Consensus 484 ~~~L~~~~~I~gyPTi~Lf~a 504 (767)
...+ ...++|+++|+++
T Consensus 66 ~~~~----~~~~~P~~~~ldp 82 (82)
T PF13899_consen 66 NAQF----DRQGYPTFFFLDP 82 (82)
T ss_dssp HHHH----HHCSSSEEEEEET
T ss_pred hHHh----CCccCCEEEEeCC
Confidence 2222 1266999999863
No 121
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.45 E-value=8.9e-07 Score=88.13 Aligned_cols=109 Identities=9% Similarity=0.038 Sum_probs=77.9
Q ss_pred CCcEEEEEE-cCcChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccchhhHHhh-------ccccCcEEEEecCCcc
Q 046627 411 NEDVVVLFS-SSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLNGEYLKN-------INFKLPRIYLMDCTLN 481 (767)
Q Consensus 411 ~K~VLV~Fy-ApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~~~~v~~-------~~~~~~vIa~ID~t~N 481 (767)
+|.+||.|| +.||++|....|.+.++++.|.+ ...++.|+++.... .....+. .+++++.+..-+
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~--~~~~~~~~~~~~~~~~~~f~~l~D~~---- 102 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFS--HLAWRNTPRKEGGLGKINFPLLADPK---- 102 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHH--HHHHHHhhhhhCCccCcceeEEECCc----
Confidence 789999999 89999999999999999999975 46788888765321 1122222 345666664322
Q ss_pred cchHHHhhcCCCC------cccEEEEEeCCCeeEEEEeC----CCCHHHHHHHHHHh
Q 046627 482 DCSLILKSMTQRE------VYPALVLFPAERKNAISFKG----DISVADVIKFIADH 528 (767)
Q Consensus 482 D~~~~L~~~~~I~------gyPTi~Lf~aggK~~i~y~G----~~t~e~L~~FI~k~ 528 (767)
..+.+.|++. ..|++++++++|+....+.+ .++.+++++.|+..
T Consensus 103 ---~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 103 ---KKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred ---hhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 2244567775 57899999999987666633 45788888888764
No 122
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.44 E-value=4.1e-07 Score=75.97 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=43.7
Q ss_pred EEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhcCCCC
Q 046627 415 VVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQRE 494 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~ 494 (767)
++.||++||++|+++.+.++++++.+.+ . .+..+|.+.+. .+..++++.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~-i---------------------------~~~~id~~~~~---~l~~~~~i~ 51 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPN-I---------------------------SAEMIDAAEFP---DLADEYGVM 51 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCc-e---------------------------EEEEEEcccCH---hHHHHcCCc
Confidence 7789999999999999999999775432 1 55666766542 356689999
Q ss_pred cccEEEE
Q 046627 495 VYPALVL 501 (767)
Q Consensus 495 gyPTi~L 501 (767)
++||+++
T Consensus 52 ~vPti~i 58 (67)
T cd02973 52 SVPAIVI 58 (67)
T ss_pred ccCEEEE
Confidence 9999866
No 123
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.44 E-value=7.8e-07 Score=84.98 Aligned_cols=95 Identities=13% Similarity=0.157 Sum_probs=68.3
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhh
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKS 489 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~ 489 (767)
++.+|++||++||++|++.+|.+.++++.++. ...+++|+.+.... .....++++++++.+..-+. .+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~--~~~~~~~~~~~~p~~~D~~~-------~~~~ 94 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK--LEAFDKGKFLPFPVYADPDR-------KLYR 94 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH--HHHHHHhcCCCCeEEECCch-------hHHH
Confidence 34445555699999999999999999999964 46788888775432 23567778888887754332 2334
Q ss_pred cCCCC-----------------------------cccEEEEEeCCCeeEEEEeC
Q 046627 490 MTQRE-----------------------------VYPALVLFPAERKNAISFKG 514 (767)
Q Consensus 490 ~~~I~-----------------------------gyPTi~Lf~aggK~~i~y~G 514 (767)
.|++. ..|++++++++|+....+.|
T Consensus 95 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 95 ALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 56663 79999999988876655544
No 124
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.38 E-value=2.4e-06 Score=82.02 Aligned_cols=107 Identities=10% Similarity=0.071 Sum_probs=75.1
Q ss_pred CcEEEEEE-cCcChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhh
Q 046627 412 EDVVVLFS-SSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKS 489 (767)
Q Consensus 412 K~VLV~Fy-ApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~ 489 (767)
+.++|.|| ++||+.|.+..|.+.++++.+++ ...++.|+.+.. ......+++++++++.+. |.... ..+..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~--~~~~~~~~~~~~~~~~~~--D~~~~---~~~~~ 101 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSP--FSLRAWAEENGLTFPLLS--DFWPH---GEVAK 101 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCH--HHHHHHHHhcCCCceEec--CCCch---hHHHH
Confidence 78888887 99999999999999999999974 567888887642 234567778888887764 32200 12344
Q ss_pred cCCCC----cc--cEEEEEeCCCeeEEEEeCC----CCHHHHHHHH
Q 046627 490 MTQRE----VY--PALVLFPAERKNAISFKGD----ISVADVIKFI 525 (767)
Q Consensus 490 ~~~I~----gy--PTi~Lf~aggK~~i~y~G~----~t~e~L~~FI 525 (767)
.|++. ++ |++++++++|+....+.|. ++..++.+-|
T Consensus 102 ~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 102 AYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred HhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 57776 33 3899999888876666664 3455555443
No 125
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.35 E-value=2.5e-06 Score=86.39 Aligned_cols=108 Identities=7% Similarity=-0.032 Sum_probs=75.6
Q ss_pred CCcEEEEEE-cCcChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccchhhHHhh----ccccCcEEEEecCCcccch
Q 046627 411 NEDVVVLFS-SSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLNGEYLKN----INFKLPRIYLMDCTLNDCS 484 (767)
Q Consensus 411 ~K~VLV~Fy-ApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~~~~v~~----~~~~~~vIa~ID~t~ND~~ 484 (767)
+|.+||.|| +.||++|...+|.|.++++.|++ ...+++|++|...... ..... .++.++.+..-+
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~--~~~~~~~~~~~l~fpllsD~~------- 101 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHK--AWHDTSEAIGKITYPMLGDPT------- 101 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHH--HHHhhhhhccCcceeEEECCc-------
Confidence 789999999 99999999999999999999974 4578899887642211 11111 245666653321
Q ss_pred HHHhhcCCCC------cccEEEEEeCCCeeEEEEe----CCCCHHHHHHHHHH
Q 046627 485 LILKSMTQRE------VYPALVLFPAERKNAISFK----GDISVADVIKFIAD 527 (767)
Q Consensus 485 ~~L~~~~~I~------gyPTi~Lf~aggK~~i~y~----G~~t~e~L~~FI~k 527 (767)
..+++.|++. ..|++++++++|+....+. ..+..+++++.|+.
T Consensus 102 ~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 102 GVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred cHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 2345567875 4699999998888654442 24588888888764
No 126
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.32 E-value=5.9e-07 Score=87.84 Aligned_cols=93 Identities=18% Similarity=0.327 Sum_probs=75.8
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccC---ceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHH
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGY---MKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLIL 487 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~---~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L 487 (767)
+|.|.++|.|-||++|+.+-|.+.++++..+.+ ..+|-|+.|.+.... .++++++...|..|-.-|...+ .|
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~-~~y~~~~~~~W~~iPf~d~~~~----~l 107 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESL-DEYMLEHHGDWLAIPFGDDLIQ----KL 107 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHH-HHHHHhcCCCeEEecCCCHHHH----HH
Confidence 899999999999999999999999999999887 677888888776443 4577777788877766554444 35
Q ss_pred hhcCCCCcccEEEEEeCCCee
Q 046627 488 KSMTQREVYPALVLFPAERKN 508 (767)
Q Consensus 488 ~~~~~I~gyPTi~Lf~aggK~ 508 (767)
+.+|.|.++|++++...+|+.
T Consensus 108 ~~ky~v~~iP~l~i~~~dG~~ 128 (157)
T KOG2501|consen 108 SEKYEVKGIPALVILKPDGTV 128 (157)
T ss_pred HHhcccCcCceeEEecCCCCE
Confidence 668999999999999888764
No 127
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.32 E-value=8.7e-07 Score=84.33 Aligned_cols=100 Identities=12% Similarity=0.071 Sum_probs=71.3
Q ss_pred CCcEEEEEEcCcChh-hHHHHHHHHHHHHHHccC----ceeeeccccCC--cccchhhHHhhccccCcEEEEecCCcccc
Q 046627 411 NEDVVVLFSSSWCGF-CQRMELVVREVFRAVKGY----MKSLKNGYKNG--QRDLNGEYLKNINFKLPRIYLMDCTLNDC 483 (767)
Q Consensus 411 ~K~VLV~FyApWCg~-Ck~~~P~leeLak~fk~~----~~iI~V~~d~~--~~~~~~~~v~~~~~~~~vIa~ID~t~ND~ 483 (767)
+|.++|.||++||++ |.+..+.++++++.|+.. ..++.|+++.. ........+++++.+++.+..-+. .
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~----~ 97 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFGPGWIGLTGTPE----E 97 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEECCHH----H
Confidence 789999999999998 999999999999999764 78889988754 223445677777767765543211 1
Q ss_pred hHHHhhcCCCCc--------------ccEEEEEeCCCeeEEEEeC
Q 046627 484 SLILKSMTQREV--------------YPALVLFPAERKNAISFKG 514 (767)
Q Consensus 484 ~~~L~~~~~I~g--------------yPTi~Lf~aggK~~i~y~G 514 (767)
...+...|++.. .|++++++++|+....|.|
T Consensus 98 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 98 IEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 123455666543 3578999888876666643
No 128
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.31 E-value=1.4e-06 Score=83.43 Aligned_cols=77 Identities=14% Similarity=0.263 Sum_probs=61.0
Q ss_pred Chhhh-cccCCchhhhhcCCce-EEEE--eCC--hhhhhhhc-CCCCCcEEEEEcCCCCceeecCCccCCCHHHHHHHHH
Q 046627 273 SSSQI-SMSGDPQLEFQGFRGS-FFFN--DGN--YRLLGALT-GGSTIPSLAIVDPISNQHYVASKEATFNYSSMADFLH 345 (767)
Q Consensus 273 ~s~~~-e~l~~~~~~A~~fkgk-~~fv--D~~--~~~l~~~~-~~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~ 345 (767)
...++ +.| +++|++|||+ +.|+ |++ ..++++|+ ...++|+++|++..++ +|.+. .+++|.++|.+|++
T Consensus 38 ~~~~~~~~l---~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~-KY~~~-~~~~t~e~i~~Fv~ 112 (130)
T cd02983 38 CRNKYLEIL---KSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKM-KFATL-KGSFSEDGINEFLR 112 (130)
T ss_pred HHHHHHHHH---HHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccC-ccccc-cCccCHHHHHHHHH
Confidence 34455 666 9999999999 8775 775 45788885 3468999999998655 89832 34799999999999
Q ss_pred HHhcCCcCC
Q 046627 346 GFLNGTLLP 354 (767)
Q Consensus 346 ~~l~Gkl~p 354 (767)
+|++|++..
T Consensus 113 ~~l~Gkl~~ 121 (130)
T cd02983 113 ELSYGRGPT 121 (130)
T ss_pred HHHcCCccc
Confidence 999999743
No 129
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.31 E-value=2.8e-06 Score=87.09 Aligned_cols=112 Identities=7% Similarity=0.068 Sum_probs=78.7
Q ss_pred CCcEEE-EEEcCcChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccc--hhhHHhhcc--ccCcEEEEecCCcccch
Q 046627 411 NEDVVV-LFSSSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDL--NGEYLKNIN--FKLPRIYLMDCTLNDCS 484 (767)
Q Consensus 411 ~K~VLV-~FyApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~--~~~~v~~~~--~~~~vIa~ID~t~ND~~ 484 (767)
+|.++| .||+.||+.|....+.|.++++.|+. ...+++|++|...... .....++.+ ++||.+...+
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~------- 99 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADID------- 99 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCC-------
Confidence 565554 68999999999999999999999975 4688999988653321 111222333 4567665322
Q ss_pred HHHhhcCCCC------cccEEEEEeCCCeeEEEE----eCCCCHHHHHHHHHHhC
Q 046627 485 LILKSMTQRE------VYPALVLFPAERKNAISF----KGDISVADVIKFIADHG 529 (767)
Q Consensus 485 ~~L~~~~~I~------gyPTi~Lf~aggK~~i~y----~G~~t~e~L~~FI~k~~ 529 (767)
..+...|++. .+|++++++++|+..... .+.++.+++++.|+...
T Consensus 100 ~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 100 KELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred hHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 2345568874 589999999888754332 45789999999998653
No 130
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.30 E-value=2.9e-06 Score=81.22 Aligned_cols=95 Identities=6% Similarity=-0.106 Sum_probs=66.2
Q ss_pred CCcEEEEEEcCc-ChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccc-cCcEEEEecCCcccchHHHh
Q 046627 411 NEDVVVLFSSSW-CGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINF-KLPRIYLMDCTLNDCSLILK 488 (767)
Q Consensus 411 ~K~VLV~FyApW-Cg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~-~~~vIa~ID~t~ND~~~~L~ 488 (767)
+|.++|.||++| |++|++.+|.+.++++.++ ...+++|+++... ...+..++++. .++.+...+ . ..+.
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~--~~~~~~~~~~~~~~~~l~D~~--~----~~~~ 96 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPF--AQKRWCGAEGVDNVTTLSDFR--D----HSFG 96 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHH--HHHHHHHhcCCCCceEeecCc--c----cHHH
Confidence 789999999999 6999999999999999986 5788999886532 22334444444 344443221 0 1234
Q ss_pred hcCCCCc------ccEEEEEeCCCeeEEEEeC
Q 046627 489 SMTQREV------YPALVLFPAERKNAISFKG 514 (767)
Q Consensus 489 ~~~~I~g------yPTi~Lf~aggK~~i~y~G 514 (767)
..|++.. .|++++++++|+....+.|
T Consensus 97 ~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 97 KAYGVLIKDLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred HHhCCeeccCCccceEEEEEcCCCeEEEEEEC
Confidence 4577653 6999999988887665554
No 131
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.29 E-value=1.9e-06 Score=77.49 Aligned_cols=94 Identities=17% Similarity=0.258 Sum_probs=71.3
Q ss_pred echHHhhcCCccEEEEeecCCc-Chhhh-cccCCchhhhhcCCceEEEE--eCC--hhhhhhhcCC-CCCcEEEEEcCCC
Q 046627 251 ASDQYYLGHDLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFRGSFFFN--DGN--YRLLGALTGG-STIPSLAIVDPIS 323 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fkgk~~fv--D~~--~~~l~~~~~~-~~~P~l~I~d~~~ 323 (767)
++|..+...+.|++++|++.+. ....+ +.+ +++|++|+|++.|+ |++ ..+++.|+.. .++|++++++..+
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~---~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~ 79 (103)
T cd02982 3 ETFFNYEESGKPLLVLFYNKDDSESEELRERF---KEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSD 79 (103)
T ss_pred hHHhhhhhcCCCEEEEEEcCChhhHHHHHHHH---HHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEeccc
Confidence 3556666668999999987554 45555 777 99999999998885 654 5678887432 3899999999865
Q ss_pred CceeecCCccCCCHHHHHHHHHHHh
Q 046627 324 NQHYVASKEATFNYSSMADFLHGFL 348 (767)
Q Consensus 324 ~~kY~~~~~~~~t~e~L~~Fi~~~l 348 (767)
+.+|.+.. ..++.++|.+|+++++
T Consensus 80 ~~k~~~~~-~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 80 GKKYLMPE-EELTAESLEEFVEDFL 103 (103)
T ss_pred ccccCCCc-cccCHHHHHHHHHhhC
Confidence 67888754 2469999999999874
No 132
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.26 E-value=5.5e-06 Score=78.52 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=73.3
Q ss_pred CCcEEEEEE-cCcChhhHHHHHHHHHHHHHHc-cCceeeeccccCCcccchhhHHhhc-cccCcEEEEecCCcccchHHH
Q 046627 411 NEDVVVLFS-SSWCGFCQRMELVVREVFRAVK-GYMKSLKNGYKNGQRDLNGEYLKNI-NFKLPRIYLMDCTLNDCSLIL 487 (767)
Q Consensus 411 ~K~VLV~Fy-ApWCg~Ck~~~P~leeLak~fk-~~~~iI~V~~d~~~~~~~~~~v~~~-~~~~~vIa~ID~t~ND~~~~L 487 (767)
++.++|.|| +.||+.|....|.+.+++++|+ ....++.|+.+.. ......++++ +.+++.+. |.. ..+
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~--~~~~~~~~~~~~~~~~~l~--D~~-----~~~ 92 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP--FSHKAWAEKEGGLNFPLLS--DPD-----GEF 92 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHhcccCCCceEEE--CCC-----hHH
Confidence 889999999 7899999999999999999995 3568888887643 2344566676 77777664 322 134
Q ss_pred hhcCCCCccc---------EEEEEeCCCeeEEEEeCCCC
Q 046627 488 KSMTQREVYP---------ALVLFPAERKNAISFKGDIS 517 (767)
Q Consensus 488 ~~~~~I~gyP---------Ti~Lf~aggK~~i~y~G~~t 517 (767)
...|++...| ++++++++|+....+.|...
T Consensus 93 ~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 93 AKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred HHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 4567777655 89999888887777777554
No 133
>PRK15000 peroxidase; Provisional
Probab=98.16 E-value=1.2e-05 Score=82.48 Aligned_cols=110 Identities=6% Similarity=0.072 Sum_probs=79.5
Q ss_pred CCcEEEEEEcC-cChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccch--hhHHhhc---cccCcEEEEecCCcccc
Q 046627 411 NEDVVVLFSSS-WCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLN--GEYLKNI---NFKLPRIYLMDCTLNDC 483 (767)
Q Consensus 411 ~K~VLV~FyAp-WCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~--~~~v~~~---~~~~~vIa~ID~t~ND~ 483 (767)
+|.++|+||+. ||+.|..+.+.|.++++.|+. ...+++|++|....... ....++. ++.++.+..-+
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~------ 107 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVK------ 107 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCC------
Confidence 78999999995 999999999999999999975 46889999886532211 1112222 24677664322
Q ss_pred hHHHhhcCCCC------cccEEEEEeCCCeeEEEEeC----CCCHHHHHHHHHH
Q 046627 484 SLILKSMTQRE------VYPALVLFPAERKNAISFKG----DISVADVIKFIAD 527 (767)
Q Consensus 484 ~~~L~~~~~I~------gyPTi~Lf~aggK~~i~y~G----~~t~e~L~~FI~k 527 (767)
..++..|++. .+|++++++++|+....+.| .++.+++++.|+.
T Consensus 108 -~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 108 -REIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred -cHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 2345578876 79999999988886544433 5789999998875
No 134
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.16 E-value=1.2e-05 Score=81.78 Aligned_cols=109 Identities=10% Similarity=-0.005 Sum_probs=78.7
Q ss_pred CCcEEEEEE-cCcChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccchhhHHhh----ccccCcEEEEecCCcccch
Q 046627 411 NEDVVVLFS-SSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLNGEYLKN----INFKLPRIYLMDCTLNDCS 484 (767)
Q Consensus 411 ~K~VLV~Fy-ApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~~~~v~~----~~~~~~vIa~ID~t~ND~~ 484 (767)
+|.++|.|| +.||+.|....+.|.+++++|.. ...+++|+.|..... ....++ .+++|+.+..- .
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~--~a~~~~~~~~~~l~fpllsD~-------~ 101 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTH--KAWHSSSETIAKIKYAMIGDP-------T 101 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHH--HHHHHhhccccCCceeEEEcC-------c
Confidence 778999999 99999999999999999999965 467889988764321 112222 35677777432 1
Q ss_pred HHHhhcCCC----Ccc--cEEEEEeCCCeeEEEE----eCCCCHHHHHHHHHHh
Q 046627 485 LILKSMTQR----EVY--PALVLFPAERKNAISF----KGDISVADVIKFIADH 528 (767)
Q Consensus 485 ~~L~~~~~I----~gy--PTi~Lf~aggK~~i~y----~G~~t~e~L~~FI~k~ 528 (767)
..++..|++ .++ |++++++++|+....+ ...++.+++++.|+..
T Consensus 102 ~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 102 GALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred hHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 345667887 366 9999999888854333 2357899999988653
No 135
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.15 E-value=1.1e-05 Score=72.17 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=56.1
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
+...+..|+++||++|....+.++++++.+.+ . .+..+|.+.. ..++.+
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~-i---------------------------~~~~vd~~~~---~e~a~~ 60 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPN-I---------------------------EHEMIDGALF---QDEVEE 60 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC-c---------------------------eEEEEEhHhC---HHHHHH
Confidence 55578889999999999999999999987642 2 4555665543 235668
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHHH
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADVI 522 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~ 522 (767)
|+|.++||+++ +|+ ..+.|..+.++++
T Consensus 61 ~~V~~vPt~vi---dG~--~~~~G~~~~~e~~ 87 (89)
T cd03026 61 RGIMSVPAIFL---NGE--LFGFGRMTLEEIL 87 (89)
T ss_pred cCCccCCEEEE---CCE--EEEeCCCCHHHHh
Confidence 99999999975 444 3446877777764
No 136
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.11 E-value=9e-06 Score=71.47 Aligned_cols=82 Identities=20% Similarity=0.329 Sum_probs=55.6
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCC-cccchHHHhh
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCT-LNDCSLILKS 489 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t-~ND~~~~L~~ 489 (767)
++.++|.||++||++|+.+.|.+.++++.+.... .+..+|.. .+ ..+..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~---------------------------~~~~i~~~~~~---~~~~~ 81 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDV---------------------------EVVAVNVDDEN---PDLAA 81 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCc---------------------------EEEEEECCCCC---hHHHH
Confidence 7789999999999999999999999999997633 33344443 22 12233
Q ss_pred cCC--CCcccEEEEEeCCCeeEEEEeC--CCCHHHHHH
Q 046627 490 MTQ--REVYPALVLFPAERKNAISFKG--DISVADVIK 523 (767)
Q Consensus 490 ~~~--I~gyPTi~Lf~aggK~~i~y~G--~~t~e~L~~ 523 (767)
.++ +..+|++.++..+.. ...+.+ ......++.
T Consensus 82 ~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 118 (127)
T COG0526 82 EFGVAVRSIPTLLLFKDGKE-VDRLVGGKVLPKEALID 118 (127)
T ss_pred HHhhhhccCCeEEEEeCcch-hhhhhhcccCCHHHHHH
Confidence 566 888999998755544 444444 344444443
No 137
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.08 E-value=9.2e-07 Score=90.90 Aligned_cols=104 Identities=14% Similarity=0.282 Sum_probs=83.5
Q ss_pred ceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhH
Q 046627 383 SIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEY 462 (767)
Q Consensus 383 ~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~ 462 (767)
.++.++.+|+.++. ...+|+.|+||||+.|+...|.|+..+.--.+ ..
T Consensus 25 ~~~~~~eenw~~~l--------------~gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~----------------- 72 (248)
T KOG0913|consen 25 KLTRIDEENWKELL--------------TGEWMIEFGAPWCPSCSDLIPHLENFATVSLD-LG----------------- 72 (248)
T ss_pred eeEEecccchhhhh--------------chHHHHHhcCCCCccccchHHHHhccCCccCC-Cc-----------------
Confidence 47899999999998 44569999999999999999999887654333 11
Q ss_pred HhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCC
Q 046627 463 LKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNN 531 (767)
Q Consensus 463 v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~ 531 (767)
+.++++|.+.|. .|..+|-+...|||+-.. +|. .-+|.|.|+..+++.|++..--.
T Consensus 73 --------v~va~VDvt~np---gLsGRF~vtaLptIYHvk-DGe-FrrysgaRdk~dfisf~~~r~w~ 128 (248)
T KOG0913|consen 73 --------VKVAKVDVTTNP---GLSGRFLVTALPTIYHVK-DGE-FRRYSGARDKNDFISFEEHREWQ 128 (248)
T ss_pred --------eeEEEEEEEecc---ccceeeEEEecceEEEee-ccc-cccccCcccchhHHHHHHhhhhh
Confidence 388999999884 355688999999999884 333 56799999999999999875433
No 138
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.04 E-value=2.3e-05 Score=81.31 Aligned_cols=111 Identities=9% Similarity=0.075 Sum_probs=79.3
Q ss_pred CCc-EEEEEEcCcChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccchh-hHHhh---ccccCcEEEEecCCcccch
Q 046627 411 NED-VVVLFSSSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLNG-EYLKN---INFKLPRIYLMDCTLNDCS 484 (767)
Q Consensus 411 ~K~-VLV~FyApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~~-~~v~~---~~~~~~vIa~ID~t~ND~~ 484 (767)
+|. ||+.||+.||+.|..+++.|.++++.|+. ...++++++|........ +++++ ++++|++++.-+.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~------ 101 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLG------ 101 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCc------
Confidence 555 57899999999999999999999999965 468999998875432221 23432 3677887765332
Q ss_pred HHHhhcCCC-------CcccEEEEEeCCCeeEEE--Ee--CCCCHHHHHHHHHHh
Q 046627 485 LILKSMTQR-------EVYPALVLFPAERKNAIS--FK--GDISVADVIKFIADH 528 (767)
Q Consensus 485 ~~L~~~~~I-------~gyPTi~Lf~aggK~~i~--y~--G~~t~e~L~~FI~k~ 528 (767)
.++..|++ ...|++++++++|+.... |. ..+..+++++.|+..
T Consensus 102 -~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 102 -KVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred -hHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 23446776 368999999988875333 32 357899999999753
No 139
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.01 E-value=2.5e-05 Score=80.10 Aligned_cols=110 Identities=8% Similarity=0.111 Sum_probs=76.0
Q ss_pred cEEEEEEcCcChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccch-hhHHhh---ccccCcEEEEecCCcccchHHH
Q 046627 413 DVVVLFSSSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLN-GEYLKN---INFKLPRIYLMDCTLNDCSLIL 487 (767)
Q Consensus 413 ~VLV~FyApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~-~~~v~~---~~~~~~vIa~ID~t~ND~~~~L 487 (767)
.+|+.||+.||+.|....+.+.++++.|+. ...+++|++|....... .+.+.+ .+++|+.+...+ ..+
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~-------~~i 100 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPD-------REV 100 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECch-------HHH
Confidence 456689999999999999999999999975 46889999886432111 011111 567788775433 234
Q ss_pred hhcCCCC--------cccEEEEEeCCCeeEEEEeC----CCCHHHHHHHHHHhC
Q 046627 488 KSMTQRE--------VYPALVLFPAERKNAISFKG----DISVADVIKFIADHG 529 (767)
Q Consensus 488 ~~~~~I~--------gyPTi~Lf~aggK~~i~y~G----~~t~e~L~~FI~k~~ 529 (767)
+..|++. ..|++++++.+|+....+.+ .++.+++.+.|+...
T Consensus 101 a~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 101 AKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred HHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 5567654 24579999888876544433 578999999997753
No 140
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.98 E-value=3.5e-05 Score=82.17 Aligned_cols=111 Identities=12% Similarity=0.017 Sum_probs=78.3
Q ss_pred CCcEEEEEE-cCcChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccchhh--HHhh---ccccCcEEEEecCCcccc
Q 046627 411 NEDVVVLFS-SSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLNGE--YLKN---INFKLPRIYLMDCTLNDC 483 (767)
Q Consensus 411 ~K~VLV~Fy-ApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~~~--~v~~---~~~~~~vIa~ID~t~ND~ 483 (767)
+|.+++.|| +.||+.|..++|.|.++++.|++ ...+++|++|......... .+++ .+++++.+..-+
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~------ 171 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDIS------ 171 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCC------
Confidence 667777777 99999999999999999999975 3678999987732111111 1222 356677765422
Q ss_pred hHHHhhcCCCC-----cccEEEEEeCCCeeEEEE----eCCCCHHHHHHHHHHh
Q 046627 484 SLILKSMTQRE-----VYPALVLFPAERKNAISF----KGDISVADVIKFIADH 528 (767)
Q Consensus 484 ~~~L~~~~~I~-----gyPTi~Lf~aggK~~i~y----~G~~t~e~L~~FI~k~ 528 (767)
..+++.|++. ..|++++++++|+....+ ...++.+++++.|+..
T Consensus 172 -~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 172 -REVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred -hHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 3456678874 589999999888854433 3467999999988743
No 141
>PRK13189 peroxiredoxin; Provisional
Probab=97.96 E-value=4.2e-05 Score=79.72 Aligned_cols=111 Identities=5% Similarity=0.085 Sum_probs=76.7
Q ss_pred CC-cEEEEEEcCcChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccchhh-HHhh---ccccCcEEEEecCCcccch
Q 046627 411 NE-DVVVLFSSSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLNGE-YLKN---INFKLPRIYLMDCTLNDCS 484 (767)
Q Consensus 411 ~K-~VLV~FyApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~~~-~v~~---~~~~~~vIa~ID~t~ND~~ 484 (767)
+| .+|+.||+.||+.|..+.+.|.++++.|+. +..+++|++|......... .+.+ .+++|+.++..+.
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~------ 108 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRG------ 108 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCcc------
Confidence 56 455688899999999999999999999975 4678999988654321111 1111 2467777764332
Q ss_pred HHHhhcCCCC-------cccEEEEEeCCCeeEEEE----eCCCCHHHHHHHHHHh
Q 046627 485 LILKSMTQRE-------VYPALVLFPAERKNAISF----KGDISVADVIKFIADH 528 (767)
Q Consensus 485 ~~L~~~~~I~-------gyPTi~Lf~aggK~~i~y----~G~~t~e~L~~FI~k~ 528 (767)
.++..|++. .+|++++++++|+....+ ...++.+++++.|+..
T Consensus 109 -~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 109 -EIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred -HHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 244456654 579999999888753332 2567899999999764
No 142
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.96 E-value=5.8e-05 Score=72.46 Aligned_cols=108 Identities=17% Similarity=0.185 Sum_probs=82.8
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEc--CcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhh
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSS--SWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGE 461 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyA--pWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~ 461 (767)
.+.|+..+++..+. ...+.+|+|-. --|+-+....=+++++++.|.+..
T Consensus 19 ~~~~~~~~~~~~~~------------~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~----------------- 69 (132)
T PRK11509 19 WTPVSESRLDDWLT------------QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT----------------- 69 (132)
T ss_pred CCccccccHHHHHh------------CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc-----------------
Confidence 45677788888882 14454554442 257778888889999999996421
Q ss_pred HHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCCCC
Q 046627 462 YLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNNSH 533 (767)
Q Consensus 462 ~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~~~ 533 (767)
+.++++|++.|. .++.+|+|.++||++|| ++|+....+.|.++.+++.++|+++.....
T Consensus 70 ---------v~~akVDiD~~~---~LA~~fgV~siPTLl~F-kdGk~v~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 70 ---------WQVAIADLEQSE---AIGDRFGVFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred ---------eEEEEEECCCCH---HHHHHcCCccCCEEEEE-ECCEEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence 178889988773 57789999999999999 566778889999999999999999876553
No 143
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.94 E-value=4.3e-05 Score=79.33 Aligned_cols=111 Identities=6% Similarity=0.047 Sum_probs=78.3
Q ss_pred CCcEE-EEEEcCcChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccchh-hHHh---hccccCcEEEEecCCcccch
Q 046627 411 NEDVV-VLFSSSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLNG-EYLK---NINFKLPRIYLMDCTLNDCS 484 (767)
Q Consensus 411 ~K~VL-V~FyApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~~-~~v~---~~~~~~~vIa~ID~t~ND~~ 484 (767)
+|.++ +.||+.||+.|..+.+.|.++++.|+. ...++++++|........ ..++ .++++++.++..+
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~------- 105 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPM------- 105 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCc-------
Confidence 56555 588999999999999999999999964 468999999876432211 1222 2356777776533
Q ss_pred HHHhhcCCCC-------cccEEEEEeCCCeeEEEE----eCCCCHHHHHHHHHHh
Q 046627 485 LILKSMTQRE-------VYPALVLFPAERKNAISF----KGDISVADVIKFIADH 528 (767)
Q Consensus 485 ~~L~~~~~I~-------gyPTi~Lf~aggK~~i~y----~G~~t~e~L~~FI~k~ 528 (767)
..++..|++. ..|++++++++|+....+ .-.|+.+++++.|+..
T Consensus 106 ~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 106 GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred hHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 2345567752 479999999888754432 2357999999999764
No 144
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.94 E-value=3.2e-05 Score=60.42 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=44.3
Q ss_pred EEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhcCCCC
Q 046627 415 VVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQRE 494 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~ 494 (767)
|+.||++||++|+++.+.+.++ +...... .+..++++...........+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 52 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGV---------------------------KFEAVDVDEDPALEKELKRYGVG 52 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCc---------------------------EEEEEEcCCChHHhhHHHhCCCc
Confidence 5789999999999999999998 3333222 55666665543221111357889
Q ss_pred cccEEEEEeCC
Q 046627 495 VYPALVLFPAE 505 (767)
Q Consensus 495 gyPTi~Lf~ag 505 (767)
.+|+++++..+
T Consensus 53 ~~P~~~~~~~~ 63 (69)
T cd01659 53 GVPTLVVFGPG 63 (69)
T ss_pred cccEEEEEeCC
Confidence 99999999765
No 145
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=7.3e-05 Score=72.80 Aligned_cols=104 Identities=13% Similarity=0.253 Sum_probs=79.2
Q ss_pred cCCCcEEEEEEcCcChhhHHHHHHH---HHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCC-cccch
Q 046627 409 AWNEDVVVLFSSSWCGFCQRMELVV---REVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCT-LNDCS 484 (767)
Q Consensus 409 a~~K~VLV~FyApWCg~Ck~~~P~l---eeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t-~ND~~ 484 (767)
..+|..++.|-.+.|.+|.++...+ .++.+.++++..++.+++...+ ++...+... .-.-.
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~sk---------------pv~f~~g~kee~~s~ 104 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSK---------------PVLFKVGDKEEKMST 104 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCc---------------ceEeecCceeeeecH
Confidence 3589999999999999999999876 6678888887777777665544 233333322 11222
Q ss_pred HHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHH
Q 046627 485 LILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIAD 527 (767)
Q Consensus 485 ~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k 527 (767)
..|++.|.++++||++||+..|+.....+|.+..++++.-++-
T Consensus 105 ~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 105 EELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred HHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHH
Confidence 4688899999999999999999988899999999987765543
No 146
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.87 E-value=4.9e-05 Score=63.33 Aligned_cols=72 Identities=13% Similarity=0.280 Sum_probs=48.5
Q ss_pred EEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCccc-chHHHhhcCCC
Q 046627 415 VVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLND-CSLILKSMTQR 493 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND-~~~~L~~~~~I 493 (767)
+..|+++||++|+++.+.+++. .. .+..+|++.+. ....+...+++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i---------------------------~~~~vdi~~~~~~~~~~~~~~~~ 48 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GI---------------------------AFEEIDVEKDSAAREEVLKVLGQ 48 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CC---------------------------eEEEEeccCCHHHHHHHHHHhCC
Confidence 5679999999999999888652 11 23345554432 12234556899
Q ss_pred CcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHH
Q 046627 494 EVYPALVLFPAERKNAISFKGDISVADVIKFIA 526 (767)
Q Consensus 494 ~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~ 526 (767)
.++|++++. ++. +.| .+.+.|.++|+
T Consensus 49 ~~vP~~~~~---~~~---~~g-~~~~~i~~~i~ 74 (74)
T TIGR02196 49 RGVPVIVIG---HKI---IVG-FDPEKLDQLLE 74 (74)
T ss_pred CcccEEEEC---CEE---Eee-CCHHHHHHHhC
Confidence 999999985 332 455 57788888874
No 147
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.79 E-value=9.6e-05 Score=69.48 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=68.6
Q ss_pred ccCCCcEEEEEEcC----cChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccc
Q 046627 408 SAWNEDVVVLFSSS----WCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDC 483 (767)
Q Consensus 408 ~a~~K~VLV~FyAp----WCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~ 483 (767)
+...|.++|+||++ ||.+|+..... +++.+.++.+. ++...|++..+-
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~f---------------------------v~w~~dv~~~eg 65 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRM---------------------------LFWACSVAKPEG 65 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCE---------------------------EEEEEecCChHH
Confidence 45699999999999 99999765522 44555555432 566777776654
Q ss_pred hHHHhhcCCCCcccEEEEEe-CCC--eeEEEEeCCCCHHHHHHHHHHhC
Q 046627 484 SLILKSMTQREVYPALVLFP-AER--KNAISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 484 ~~~L~~~~~I~gyPTi~Lf~-agg--K~~i~y~G~~t~e~L~~FI~k~~ 529 (767)
..++..+++.+||++.++. +++ +...+..|.++.++|+..|..-.
T Consensus 66 -~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 66 -YRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred -HHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 3467789999999999982 233 34667899999999999887654
No 148
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.75 E-value=0.00016 Score=73.93 Aligned_cols=111 Identities=10% Similarity=0.090 Sum_probs=76.3
Q ss_pred CCcEEEEEEc-CcChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccchhhHHhh-----ccccCcEEEEecCCcccc
Q 046627 411 NEDVVVLFSS-SWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLNGEYLKN-----INFKLPRIYLMDCTLNDC 483 (767)
Q Consensus 411 ~K~VLV~FyA-pWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~~~~v~~-----~~~~~~vIa~ID~t~ND~ 483 (767)
+|.++|.||+ .||++|....+.+.++++.|+. ...+++|++|............. ..++|+.+..-+
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~------ 109 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKT------ 109 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcH------
Confidence 7789999995 8899999999999999999975 46899999876543221111111 135667664422
Q ss_pred hHHHhhcCCCC------cccEEEEEeCCCeeEEEEe----CCCCHHHHHHHHHHh
Q 046627 484 SLILKSMTQRE------VYPALVLFPAERKNAISFK----GDISVADVIKFIADH 528 (767)
Q Consensus 484 ~~~L~~~~~I~------gyPTi~Lf~aggK~~i~y~----G~~t~e~L~~FI~k~ 528 (767)
..++..|++. .+|+.++++++|+....+. -.++.+++++.|...
T Consensus 110 -~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 110 -KSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred -hHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 2345567774 4799999998887544332 356788888887654
No 149
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.55 E-value=0.0002 Score=60.67 Aligned_cols=23 Identities=17% Similarity=0.891 Sum_probs=20.3
Q ss_pred EEEEEcCcChhhHHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREVF 437 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeLa 437 (767)
++.||++||++|+++.+.+.++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~ 24 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG 24 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC
Confidence 67899999999999999987763
No 150
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.52 E-value=0.00057 Score=71.01 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=67.6
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
++.-||+||.+.|++|+.+.|++..+++.|. ..++.|++|...-.. ++.. -....+.+.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~-----------fp~~--------~~~~g~~~~ 178 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPS-----------FPNP--------RPDPGQAKR 178 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcC-----------CCCC--------CCCHHHHHH
Confidence 6667999999999999999999999999994 445666665432100 0000 001235667
Q ss_pred CCCCcccEEEEEeCCCe-eEEEEeCCCCHHHHHHHH
Q 046627 491 TQREVYPALVLFPAERK-NAISFKGDISVADVIKFI 525 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK-~~i~y~G~~t~e~L~~FI 525 (767)
++|..+|+++|+..+++ ....-.|.++.++|.+-|
T Consensus 179 l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 179 LGVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred cCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 99999999999988774 344456999999998644
No 151
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.42 E-value=0.00075 Score=72.26 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=72.1
Q ss_pred Cceeeec-ccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchh
Q 046627 382 DSIPRVT-VHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNG 460 (767)
Q Consensus 382 ~~V~~Lt-~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~ 460 (767)
+.|..|+ ++.|-+.| -.. ..+..|+|.||-+-|+-|..|...|..||++|.. .
T Consensus 125 G~v~ei~~~e~~l~~i-e~~--------~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-v---------------- 178 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAI-EKE--------SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-V---------------- 178 (265)
T ss_dssp -SEEE--SHHHHHHHC-CTS--------STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-S----------------
T ss_pred ceEEEccChhhHHHHH-hcc--------CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-e----------------
Confidence 3577885 47788887 221 1356899999999999999999999999999975 2
Q ss_pred hHHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeC-------CCCHHHHHHHHHHhCCCCC
Q 046627 461 EYLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKG-------DISVADVIKFIADHGNNSH 533 (767)
Q Consensus 461 ~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G-------~~t~e~L~~FI~k~~~~~~ 533 (767)
.|.+|.+.... +...|.+...||+++|. +|.....+.| ..+.++|..||.+++-...
T Consensus 179 -----------KFvkI~a~~~~----~~~~f~~~~LPtllvYk-~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~~ 242 (265)
T PF02114_consen 179 -----------KFVKIRASKCP----ASENFPDKNLPTLLVYK-NGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVLPE 242 (265)
T ss_dssp -----------EEEEEEECGCC----TTTTS-TTC-SEEEEEE-TTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSSS-
T ss_pred -----------EEEEEehhccC----cccCCcccCCCEEEEEE-CCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCCCC
Confidence 45555544322 23368899999999996 5554444432 4678899999999876543
No 152
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.40 E-value=0.00026 Score=61.17 Aligned_cols=23 Identities=30% Similarity=0.823 Sum_probs=20.9
Q ss_pred EEEEEcCcChhhHHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREVF 437 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeLa 437 (767)
++.|+++||++|+++.+.++++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~ 23 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN 23 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC
Confidence 47899999999999999999875
No 153
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.26 E-value=0.0039 Score=58.90 Aligned_cols=109 Identities=12% Similarity=0.218 Sum_probs=71.4
Q ss_pred eeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHH-HHHccCceeeeccccCCcccchhhH
Q 046627 384 IPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVF-RAVKGYMKSLKNGYKNGQRDLNGEY 462 (767)
Q Consensus 384 V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLa-k~fk~~~~iI~V~~d~~~~~~~~~~ 462 (767)
...|+.-||+.+| -. .+.+||.|=... +-=.-.-.|.++| +..+....+
T Consensus 6 ~v~LD~~tFdKvi-~k-----------f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dL---------------- 55 (126)
T PF07912_consen 6 CVPLDELTFDKVI-PK-----------FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDL---------------- 55 (126)
T ss_dssp SEEESTTHHHHHG-GG-----------SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSE----------------
T ss_pred eeeccceehhhee-cc-----------CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCce----------------
Confidence 5688999999999 21 789999996432 2223345677888 444332221
Q ss_pred HhhccccCcEEEEecC---CcccchHHHhhcCCC--CcccEEEEEeCCCeeEEEE--eCCCCHHHHHHHHHHhCCCC
Q 046627 463 LKNINFKLPRIYLMDC---TLNDCSLILKSMTQR--EVYPALVLFPAERKNAISF--KGDISVADVIKFIADHGNNS 532 (767)
Q Consensus 463 v~~~~~~~~vIa~ID~---t~ND~~~~L~~~~~I--~gyPTi~Lf~aggK~~i~y--~G~~t~e~L~~FI~k~~~~~ 532 (767)
.+|.+-+ ...++ ..|..+|++ +.||.++||..+...++.| .|+.+.++|..|+..|+..-
T Consensus 56 ---------LvAeVGikDYGek~N-~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~y 122 (126)
T PF07912_consen 56 ---------LVAEVGIKDYGEKEN-MELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGLY 122 (126)
T ss_dssp ---------EEEEEECBSSSS-CC-HHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS--
T ss_pred ---------EEEEeCcccccchhH-HHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCCee
Confidence 4444433 22333 457889999 6799999999777789999 89999999999999997644
No 154
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00031 Score=71.87 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=59.9
Q ss_pred eeee-cccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhH
Q 046627 384 IPRV-TVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEY 462 (767)
Q Consensus 384 V~~L-t~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~ 462 (767)
++.. .++.+++...-| ..+.++|.|||.|.+.|++..|.+.+|..+|....
T Consensus 126 ikyf~~~q~~deel~rn----------k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~------------------ 177 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDRN----------KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL------------------ 177 (265)
T ss_pred eeeecchhhHHHHhccC----------CceEEEEEEEeecChhhcccccccHHHHHHhCCCC------------------
Confidence 6667 566677766222 37889999999999999999999999999997642
Q ss_pred HhhccccCcEEEEecCCcccchHHHhhcCCC------CcccEEEEEeCCC
Q 046627 463 LKNINFKLPRIYLMDCTLNDCSLILKSMTQR------EVYPALVLFPAER 506 (767)
Q Consensus 463 v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I------~gyPTi~Lf~agg 506 (767)
..++++|...-. + .+.+|+| +..||+++|..|+
T Consensus 178 --------lkFGkvDiGrfp--d-~a~kfris~s~~srQLPT~ilFq~gk 216 (265)
T KOG0914|consen 178 --------LKFGKVDIGRFP--D-VAAKFRISLSPGSRQLPTYILFQKGK 216 (265)
T ss_pred --------CcccceeeccCc--C-hHHheeeccCcccccCCeEEEEccch
Confidence 155666654321 1 1234544 5899999996554
No 155
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.06 E-value=0.0034 Score=66.86 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=70.6
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
++.-||+||.+-|++|+++.|++..+++.|. ..++.|++|...-.. ++.. .. | ..+.++
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~-----------fp~~-~~-----d--~gqa~~ 208 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPG-----------LPNS-RS-----D--SGQAQH 208 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCC-----------CCCc-cC-----C--hHHHHh
Confidence 5577999999999999999999999999996 455677776542100 1111 11 1 224567
Q ss_pred CCCCcccEEEEEeCCCee-EEEEeCCCCHHHHHHHHHHhC
Q 046627 491 TQREVYPALVLFPAERKN-AISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~-~i~y~G~~t~e~L~~FI~k~~ 529 (767)
++|..+|+++|...+.+. ...-.|.++.++|.+-|..-+
T Consensus 209 l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 209 LGVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred cCCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 899999999999887553 223459999999988776544
No 156
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.05 E-value=0.013 Score=69.14 Aligned_cols=180 Identities=12% Similarity=0.137 Sum_probs=106.0
Q ss_pred CCccEEE-EeecCCc-Chhhh-cccCCchhhhhcCCceEEE--EeC--ChhhhhhhcCCCCCcEEEEEcCCC---Cceee
Q 046627 259 HDLTTAK-DVKVGEK-SSSQI-SMSGDPQLEFQGFRGSFFF--NDG--NYRLLGALTGGSTIPSLAIVDPIS---NQHYV 328 (767)
Q Consensus 259 ~~~p~~~-~f~~~~e-~s~~~-e~l~~~~~~A~~fkgk~~f--vD~--~~~~l~~~~~~~~~P~l~I~d~~~---~~kY~ 328 (767)
...|+.+ +|.+... .+.+. +.| +++| ..-+++.+ .|. +.+.++.| +.++.|++.|.+... +.+|.
T Consensus 364 l~~~v~l~~~~~~~~~~~~e~~~~l---~e~~-~~s~~i~~~~~~~~~~~~~~~~~-~v~~~P~~~i~~~~~~~~~i~f~ 438 (555)
T TIGR03143 364 LENPVTLLLFLDGSNEKSAELQSFL---GEFA-SLSEKLNSEAVNRGEEPESETLP-KITKLPTVALLDDDGNYTGLKFH 438 (555)
T ss_pred cCCCEEEEEEECCCchhhHHHHHHH---HHHH-hcCCcEEEEEeccccchhhHhhc-CCCcCCEEEEEeCCCcccceEEE
Confidence 3446544 3444332 44444 444 4444 34456655 343 35666767 467899999986332 22332
Q ss_pred cCCccCCCHHHHHHHHHHHhcCCcCCCcccccccccccCCCCCCccccCccccCceeeecccccccccccccCCcccccc
Q 046627 329 ASKEATFNYSSMADFLHGFLNGTLLPYQRSESILQISREATHPPFVNMDFHEVDSIPRVTVHSFSDLVGLNQSDNENAFS 408 (767)
Q Consensus 329 ~~~~~~~t~e~L~~Fi~~~l~Gkl~p~~kSe~~p~~~~~~~~p~fvn~df~~~~~V~~Lt~~nF~e~V~~d~~~~~~~a~ 408 (767)
- --.=+.+..||...++-.- +. +.|..++-+.+-.+
T Consensus 439 g----~P~G~Ef~s~i~~i~~~~~-------~~-----------------------~~l~~~~~~~i~~~---------- 474 (555)
T TIGR03143 439 G----VPSGHELNSFILALYNAAG-------PG-----------------------QPLGEELLEKIKKI---------- 474 (555)
T ss_pred e----cCccHhHHHHHHHHHHhcC-------CC-----------------------CCCCHHHHHHHHhc----------
Confidence 1 2234567778888765310 00 12222222222211
Q ss_pred cCCCcE-EEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHH
Q 046627 409 AWNEDV-VVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLIL 487 (767)
Q Consensus 409 a~~K~V-LV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L 487 (767)
++++ +-.|.++||++|.+....+++++....+ . ..-.+|++.+ + .+
T Consensus 475 --~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~-i---------------------------~~~~i~~~~~--~-~~ 521 (555)
T TIGR03143 475 --TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN-V---------------------------EAEMIDVSHF--P-DL 521 (555)
T ss_pred --CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC-c---------------------------eEEEEECccc--H-HH
Confidence 4555 4456899999999999888888877642 1 3344555544 2 45
Q ss_pred hhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHH
Q 046627 488 KSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFI 525 (767)
Q Consensus 488 ~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI 525 (767)
..+|+|.++|++++ +++ ..+.|..+.++++++|
T Consensus 522 ~~~~~v~~vP~~~i---~~~--~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 522 KDEYGIMSVPAIVV---DDQ--QVYFGKKTIEEMLELI 554 (555)
T ss_pred HHhCCceecCEEEE---CCE--EEEeeCCCHHHHHHhh
Confidence 66899999999988 333 4477988999999886
No 157
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.99 E-value=0.0042 Score=65.85 Aligned_cols=98 Identities=14% Similarity=0.068 Sum_probs=69.4
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
++.-||+||.+-|++|+++.|++..+++.+.= .++.|++|...... ++. ...|. .....
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~-----------fp~-~~~d~-------gqa~~ 201 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPL-----------LPD-SRTDQ-------GQAQR 201 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCC-----------CCC-CccCh-------hHHHh
Confidence 55679999999999999999999999999964 45667766532100 111 11111 12346
Q ss_pred CCCCcccEEEEEeCCCee-EEEEeCCCCHHHHHHHHHHhC
Q 046627 491 TQREVYPALVLFPAERKN-AISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~-~i~y~G~~t~e~L~~FI~k~~ 529 (767)
++|..+|+++|+..+.+. ...-.|.++.++|.+-|...+
T Consensus 202 l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 202 LGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred cCCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 899999999999877653 233459999999988776544
No 158
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.95 E-value=0.0012 Score=63.17 Aligned_cols=78 Identities=19% Similarity=0.367 Sum_probs=40.6
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
.+..++.|..+|||.|.+..|.+.++++..+. ..+ .+...|-........+ .
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~-i~~-------------------------~~i~rd~~~el~~~~l--t 92 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANPN-IEV-------------------------RIILRDENKELMDQYL--T 92 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT-EEE-------------------------EEE-HHHHHHHTTTTT--T
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCCC-CeE-------------------------EEEEecCChhHHHHHH--h
Confidence 55678889999999999999999999998642 111 1212221111000111 1
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCC
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDIS 517 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t 517 (767)
.+...+||+++++++++...++ |++.
T Consensus 93 ~g~~~IP~~I~~d~~~~~lg~w-gerP 118 (129)
T PF14595_consen 93 NGGRSIPTFIFLDKDGKELGRW-GERP 118 (129)
T ss_dssp -SS--SSEEEEE-TT--EEEEE-ESS-
T ss_pred CCCeecCEEEEEcCCCCEeEEE-cCCC
Confidence 4788999999998887755555 4443
No 159
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.88 E-value=0.0056 Score=52.87 Aligned_cols=73 Identities=19% Similarity=0.314 Sum_probs=49.5
Q ss_pred EEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhcCCCCc
Q 046627 416 VLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQREV 495 (767)
Q Consensus 416 V~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~g 495 (767)
|.+++++|++|..+...+++++..+.-. +-.+|.+ +.+ .+ .+|+|.+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~i~-----------------------------~ei~~~~--~~~-~~-~~ygv~~ 49 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELGIE-----------------------------VEIIDIE--DFE-EI-EKYGVMS 49 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTTEE-----------------------------EEEEETT--THH-HH-HHTT-SS
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcCCe-----------------------------EEEEEcc--CHH-HH-HHcCCCC
Confidence 3447888999999999999998888421 1122332 222 23 5799999
Q ss_pred ccEEEEEeCCCeeEEEEeC-CCCHHHHHHHHH
Q 046627 496 YPALVLFPAERKNAISFKG-DISVADVIKFIA 526 (767)
Q Consensus 496 yPTi~Lf~aggK~~i~y~G-~~t~e~L~~FI~ 526 (767)
+|++++ +|+ +.|.| ..+.++|.++|+
T Consensus 50 vPalvI---ng~--~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 50 VPALVI---NGK--VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp SSEEEE---TTE--EEEESS--HHHHHHHHHH
T ss_pred CCEEEE---CCE--EEEEecCCCHHHHHHHhC
Confidence 999955 343 67899 778999999885
No 160
>PTZ00062 glutaredoxin; Provisional
Probab=96.87 E-value=0.0065 Score=62.75 Aligned_cols=83 Identities=11% Similarity=0.126 Sum_probs=54.0
Q ss_pred echHHhhcCC-ccEEEEeecCC-cChhhh-cccCCchhhhhcCCceEEE--EeCChhhhhhhcCCCCCcEEEEEcCCCC-
Q 046627 251 ASDQYYLGHD-LTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRGSFFF--NDGNYRLLGALTGGSTIPSLAIVDPISN- 324 (767)
Q Consensus 251 etf~~~~~~~-~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkgk~~f--vD~~~~~l~~~~~~~~~P~l~I~d~~~~- 324 (767)
+.+..+...+ ..++++|.++| ++...+ +-| .+++++|.. +.| ||++ | .+..+|+++++..++.
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl---~~l~~~~~~-~~F~~V~~d------~-~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVC---NALVEDFPS-LEFYVVNLA------D-ANNEYGVFEFYQNSQLI 75 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHH---HHHHHHCCC-cEEEEEccc------c-CcccceEEEEEECCEEE
Confidence 3444555543 34455555665 566666 666 788888864 555 4655 3 6788999999984432
Q ss_pred ceeecCCccCCCHHHHHHHHHHHhc
Q 046627 325 QHYVASKEATFNYSSMADFLHGFLN 349 (767)
Q Consensus 325 ~kY~~~~~~~~t~e~L~~Fi~~~l~ 349 (767)
.++ .+.+...|.+++..+..
T Consensus 76 ~r~-----~G~~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 76 NSL-----EGCNTSTLVSFIRGWAQ 95 (204)
T ss_pred eee-----eCCCHHHHHHHHHHHcC
Confidence 122 25688999999988654
No 161
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.84 E-value=0.0025 Score=63.35 Aligned_cols=94 Identities=20% Similarity=0.309 Sum_probs=48.2
Q ss_pred ccCCCcEEEEEEcCcChhhHHHHHH-H--HHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcc-cc
Q 046627 408 SAWNEDVVVLFSSSWCGFCQRMELV-V--REVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLN-DC 483 (767)
Q Consensus 408 ~a~~K~VLV~FyApWCg~Ck~~~P~-l--eeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~N-D~ 483 (767)
.+.+|++||.++++||..|+.|... | .++++.++.+. +-.++|.+.. |+
T Consensus 34 k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~F---------------------------I~VkvDree~Pdi 86 (163)
T PF03190_consen 34 KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNF---------------------------IPVKVDREERPDI 86 (163)
T ss_dssp HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----------------------------EEEEEETTT-HHH
T ss_pred HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCE---------------------------EEEEeccccCccH
Confidence 4459999999999999999999864 3 55777776543 2234454432 22
Q ss_pred hHHHh----hcCCCCcccEEEEEeCCCeeEE--EEe------CCCCHHHHHHHHHHh
Q 046627 484 SLILK----SMTQREVYPALVLFPAERKNAI--SFK------GDISVADVIKFIADH 528 (767)
Q Consensus 484 ~~~L~----~~~~I~gyPTi~Lf~aggK~~i--~y~------G~~t~e~L~~FI~k~ 528 (767)
..... ...+..|+|+.+|...+++... .|- |....-+++..|.+.
T Consensus 87 d~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~ 143 (163)
T PF03190_consen 87 DKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAEL 143 (163)
T ss_dssp HHHHHHHHHHHHS---SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHH
Confidence 11100 0126789999999988886432 232 223455555555543
No 162
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.66 E-value=0.0067 Score=53.26 Aligned_cols=79 Identities=16% Similarity=0.345 Sum_probs=49.6
Q ss_pred EEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCccc-chHHHhhcC--
Q 046627 415 VVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLND-CSLILKSMT-- 491 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND-~~~~L~~~~-- 491 (767)
++.|+.+||++|++....++++...+++ . .+..+|...+. ....+....
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~-i---------------------------~~~~idi~~~~~~~~el~~~~~~ 54 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDD-F---------------------------DYRYVDIHAEGISKADLEKTVGK 54 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccC-C---------------------------cEEEEECCCChHHHHHHHHHHCC
Confidence 7789999999999999999999876532 2 22333333220 001122222
Q ss_pred CCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCC
Q 046627 492 QREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGN 530 (767)
Q Consensus 492 ~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~ 530 (767)
++..+|++++ +|+. .| ..++|.+++++|.+
T Consensus 55 ~~~~vP~ifi---~g~~----ig--g~~~~~~~~~~~~~ 84 (85)
T PRK11200 55 PVETVPQIFV---DQKH----IG--GCTDFEAYVKENLG 84 (85)
T ss_pred CCCcCCEEEE---CCEE----Ec--CHHHHHHHHHHhcc
Confidence 4578999863 3432 22 46889999888764
No 163
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.62 E-value=0.0036 Score=59.27 Aligned_cols=75 Identities=19% Similarity=0.280 Sum_probs=43.6
Q ss_pred CCCcEEEEEEc-------CcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCccc
Q 046627 410 WNEDVVVLFSS-------SWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLND 482 (767)
Q Consensus 410 ~~K~VLV~FyA-------pWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND 482 (767)
.++.++|.|++ +||+.|.+..|.+++..........++.|.+.+.. .- + | ..|.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~------~W-----------k-d-p~n~ 78 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRP------EW-----------K-D-PNNP 78 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HH------HH-----------C---TTSH
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHH------Hh-----------C-C-CCCC
Confidence 47899999996 49999999999999988876655554434332110 00 0 0 0122
Q ss_pred chHHHhhcCCCCcccEEEEEeCC
Q 046627 483 CSLILKSMTQREVYPALVLFPAE 505 (767)
Q Consensus 483 ~~~~L~~~~~I~gyPTi~Lf~ag 505 (767)
... -..+++.++||++-|..+
T Consensus 79 fR~--~p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 79 FRT--DPDLKLKGIPTLIRWETG 99 (119)
T ss_dssp HHH----CC---SSSEEEECTSS
T ss_pred ceE--cceeeeeecceEEEECCC
Confidence 111 115899999999999555
No 164
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.58 E-value=0.0086 Score=49.58 Aligned_cols=21 Identities=19% Similarity=0.605 Sum_probs=18.5
Q ss_pred EEEEEcCcChhhHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVRE 435 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~lee 435 (767)
++.|+++||++|.++...+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~ 22 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE 22 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH
Confidence 678999999999999888766
No 165
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.0045 Score=58.07 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=34.3
Q ss_pred CCcEEEEEEc--------CcChhhHHHHHHHHHHHHHHccCceeeecccc
Q 046627 411 NEDVVVLFSS--------SWCGFCQRMELVVREVFRAVKGYMKSLKNGYK 452 (767)
Q Consensus 411 ~K~VLV~FyA--------pWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d 452 (767)
++.++|.|++ +||+.|.+.+|.+.+.-+....+..+|.|.+.
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG 74 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVG 74 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEec
Confidence 6669999998 69999999999999998877777666555443
No 166
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.47 E-value=0.0031 Score=54.25 Aligned_cols=24 Identities=38% Similarity=0.830 Sum_probs=21.3
Q ss_pred EEEEEcCcChhhHHHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREVFR 438 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeLak 438 (767)
++.|+++||++|+++.+.++++..
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~ 25 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV 25 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC
Confidence 578999999999999999988755
No 167
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.008 Score=58.80 Aligned_cols=89 Identities=13% Similarity=0.234 Sum_probs=69.2
Q ss_pred hHHhhcCCccEEEEeecCC-cChhhh-cccCCchhhhhcCCceEEEE--eCC--hhhhhhhcCCCCCcEEEEEcCCCCc-
Q 046627 253 DQYYLGHDLTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRGSFFFN--DGN--YRLLGALTGGSTIPSLAIVDPISNQ- 325 (767)
Q Consensus 253 f~~~~~~~~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkgk~~fv--D~~--~~~l~~~~~~~~~P~l~I~d~~~~~- 325 (767)
-+++.+++.|+++.|+++| .....+ ..| .+++.+|.|+|.|. |.+ ..+++.| +.+.+|++++|..+...
T Consensus 54 ~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l---~~~~~~~~g~~k~~kvdtD~~~ela~~Y-~I~avPtvlvfknGe~~d 129 (150)
T KOG0910|consen 54 DDKVINSDVPVLVDFHAEWCGPCKMLGPIL---EELVSEYAGKFKLYKVDTDEHPELAEDY-EISAVPTVLVFKNGEKVD 129 (150)
T ss_pred HHHHHccCCCEEEEEecCcCccHhHhhHHH---HHHHHhhcCeEEEEEEccccccchHhhc-ceeeeeEEEEEECCEEee
Confidence 3489999999999999988 344445 667 77799999999884 543 6888888 57889999999965432
Q ss_pred eeecCCccCCCHHHHHHHHHHHhc
Q 046627 326 HYVASKEATFNYSSMADFLHGFLN 349 (767)
Q Consensus 326 kY~~~~~~~~t~e~L~~Fi~~~l~ 349 (767)
++. +..+.+.|.++|++|+.
T Consensus 130 ~~v----G~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 130 RFV----GAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eec----ccCCHHHHHHHHHHHhc
Confidence 332 36789999999999874
No 168
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=96.42 E-value=0.012 Score=54.26 Aligned_cols=86 Identities=19% Similarity=0.227 Sum_probs=59.9
Q ss_pred CCccEEEEeecCCcC--hhhh-cccCCchhhhhc----CC--ce----EEEEeCC---hhhhhhh-cCCCCCcEEEEEcC
Q 046627 259 HDLTTAKDVKVGEKS--SSQI-SMSGDPQLEFQG----FR--GS----FFFNDGN---YRLLGAL-TGGSTIPSLAIVDP 321 (767)
Q Consensus 259 ~~~p~~~~f~~~~e~--s~~~-e~l~~~~~~A~~----fk--gk----~~fvD~~---~~~l~~~-~~~~~~P~l~I~d~ 321 (767)
+.-|-+++|.+.++. .+.. +.+ |.+|++ ++ |. ++|++++ -..++.| +....-|.++|.|.
T Consensus 13 n~~p~lvlf~D~Edeg~l~~A~~ll---QpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d~~P~LviLDi 89 (116)
T cd03071 13 NEGPCLVLFVDSEDEGESEAAKQLI---QPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDM 89 (116)
T ss_pred cCCceEEEEecccchhhHHHHHHHH---HHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCccCceEEEEec
Confidence 345777788864433 3333 444 666633 22 22 5556554 3445556 56788999999999
Q ss_pred CCCceeecCCccCCCHHHHHHHHHHHh
Q 046627 322 ISNQHYVASKEATFNYSSMADFLHGFL 348 (767)
Q Consensus 322 ~~~~kY~~~~~~~~t~e~L~~Fi~~~l 348 (767)
..+.+|+++. .++|.+++.+|+.+|+
T Consensus 90 p~r~~~v~~~-eeIT~e~~~~fv~~yl 115 (116)
T cd03071 90 SARAKYVMDV-EEITPAIVEAFVSDFL 115 (116)
T ss_pred cccceEeCch-HhcCHHHHHHHHHHhh
Confidence 8889999985 6899999999999996
No 169
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.37 E-value=0.017 Score=51.44 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=58.1
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
.+.++|-|+..+|+ .+...|.++|+.+++... ++... ..+ +...
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~---------------------------F~~~~--~~~----~~~~ 60 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDDYG---------------------------FGHTS--DKE----VAKK 60 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccCCe---------------------------EEEEC--hHH----HHHH
Confidence 78889999999998 467788999998876543 22221 111 2223
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHh
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADVIKFIADH 528 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~ 528 (767)
+.+. -|++++|......+..|.|.++.++|.+||..|
T Consensus 61 ~~~~-~~~i~l~~~~~~~~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 61 LKVK-PGSVVLFKPFEEEPVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred cCCC-CCceEEeCCcccCCccCCCCCCHHHHHHHHHhC
Confidence 5554 489999966555577899999999999999764
No 170
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.30 E-value=0.025 Score=59.57 Aligned_cols=108 Identities=14% Similarity=0.244 Sum_probs=62.0
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccC---------------CcccchhhHHhhccccCcEEEE
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKN---------------GQRDLNGEYLKNINFKLPRIYL 475 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~---------------~~~~~~~~~v~~~~~~~~vIa~ 475 (767)
++.+++.|.-|-||+|+++.+.+.++-+ ....+.-+.+.- +..+... .+.+..... .+..
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~---~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~-a~~~~~~~~-~~~~ 181 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNA---LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNK-AFDDAMKGK-DVSP 181 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhc---CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHH-HHHHHHcCC-CCCc
Confidence 7888999999999999999999887643 112221111111 0000000 000000110 0001
Q ss_pred ecCCcc-cchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHh
Q 046627 476 MDCTLN-DCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADH 528 (767)
Q Consensus 476 ID~t~N-D~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~ 528 (767)
-.|... +-...++..++|.++||++ |+ +|+ ...|..+.+.|.++|+++
T Consensus 182 ~~c~~~v~~~~~la~~lgi~gTPtiv-~~-~G~---~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 182 ASCDVDIADHYALGVQFGVQGTPAIV-LS-NGT---LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccccchHHHhHHHHHHcCCccccEEE-Ec-CCe---EeeCCCCHHHHHHHHHHc
Confidence 123221 2224467789999999999 43 444 348999999999999875
No 171
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=96.26 E-value=0.018 Score=51.00 Aligned_cols=90 Identities=8% Similarity=0.058 Sum_probs=63.5
Q ss_pred echHHhhcCCccEEEEeecCCcC-hhhh-cccCCchhhhhcCCc--eEEEE--eCC--hhhhhhhcCCCCCcEEEEEcCC
Q 046627 251 ASDQYYLGHDLTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRG--SFFFN--DGN--YRLLGALTGGSTIPSLAIVDPI 322 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkg--k~~fv--D~~--~~~l~~~~~~~~~P~l~I~d~~ 322 (767)
++|......+.++++.|++++-. ...+ ..+ .++|..+++ .+.|+ |.+ ..+.+.| +...+|++++++.+
T Consensus 4 ~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 4 SNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEY---EKLAKELKGDPDIVLAKVDATAEKDLASRF-GVSGFPTIKFFPKG 79 (102)
T ss_pred hhHHHHhccCCcEEEEEECCCCHHHHhhChHH---HHHHHHhccCCceEEEEEEccchHHHHHhC-CCCcCCEEEEecCC
Confidence 35666667888888888876633 3333 445 677888887 57775 553 5666666 57889999999976
Q ss_pred CCceeecCCccCCCHHHHHHHHHHH
Q 046627 323 SNQHYVASKEATFNYSSMADFLHGF 347 (767)
Q Consensus 323 ~~~kY~~~~~~~~t~e~L~~Fi~~~ 347 (767)
.. .+.+.+ ..+.+.|..||++.
T Consensus 80 ~~-~~~~~g--~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KK-PVDYEG--GRDLEAIVEFVNEK 101 (102)
T ss_pred Cc-ceeecC--CCCHHHHHHHHHhc
Confidence 43 555543 68899999999874
No 172
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.25 E-value=0.011 Score=60.09 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=57.5
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCccc-----------chhhHHhhccccCcEE-EEecC
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRD-----------LNGEYLKNINFKLPRI-YLMDC 478 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~-----------~~~~~v~~~~~~~~vI-a~ID~ 478 (767)
.+..++.|+.+.|++|+++.+.+.+.... -...++.+.+...... .....+.+.......- ..-.|
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~--v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~ 154 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADG--VTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASC 154 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCc--eEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcccc
Confidence 78899999999999999999998761111 1122233332220000 0000111111111110 00011
Q ss_pred Ccc-cchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHH
Q 046627 479 TLN-DCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFI 525 (767)
Q Consensus 479 t~N-D~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI 525 (767)
..+ +....+...++|.++||++ |+. |+ .+.|..+.+.|.++|
T Consensus 155 ~~~i~~~~~l~~~~gi~gtPtii-~~~-G~---~~~G~~~~~~l~~~L 197 (197)
T cd03020 155 DNPVAANLALGRQLGVNGTPTIV-LAD-GR---VVPGAPPAAQLEALL 197 (197)
T ss_pred CchHHHHHHHHHHcCCCcccEEE-ECC-Ce---EecCCCCHHHHHhhC
Confidence 111 1223467789999999997 533 43 257888888888764
No 173
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=96.15 E-value=0.02 Score=51.07 Aligned_cols=88 Identities=9% Similarity=-0.001 Sum_probs=60.4
Q ss_pred echHHh-hcCCccEEEEeecCCc-Chhhh-cccCCchhhhhcCCceEEEE--eC--ChhhhhhhcCCCCCcEEEEEcCCC
Q 046627 251 ASDQYY-LGHDLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFRGSFFFN--DG--NYRLLGALTGGSTIPSLAIVDPIS 323 (767)
Q Consensus 251 etf~~~-~~~~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fkgk~~fv--D~--~~~~l~~~~~~~~~P~l~I~d~~~ 323 (767)
++|... ...+.+++++|++++- ....+ ..+ .++|+++++++.|+ |. +..+.+.| +..++|++++++.+.
T Consensus 8 ~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~id~~~~~~~~~~~-~i~~~P~~~~~~~~~ 83 (103)
T cd03001 8 SNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEW---KKAAKALKGIVKVGAVDADVHQSLAQQY-GVRGFPTIKVFGAGK 83 (103)
T ss_pred HhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCceEEEEECcchHHHHHHC-CCCccCEEEEECCCC
Confidence 344443 3556668888887653 33344 445 77788888887664 54 35666777 578899999999764
Q ss_pred CceeecCCccCCCHHHHHHHH
Q 046627 324 NQHYVASKEATFNYSSMADFL 344 (767)
Q Consensus 324 ~~kY~~~~~~~~t~e~L~~Fi 344 (767)
...+.|.+ +.+.+.|.+|+
T Consensus 84 ~~~~~~~g--~~~~~~l~~~~ 102 (103)
T cd03001 84 NSPQDYQG--GRTAKAIVSAA 102 (103)
T ss_pred cceeecCC--CCCHHHHHHHh
Confidence 45666654 78999999986
No 174
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=96.10 E-value=0.022 Score=51.25 Aligned_cols=86 Identities=9% Similarity=-0.045 Sum_probs=60.3
Q ss_pred echHHhhcCCccEEEEeecCCc-Chhhh-cccCCchhhhhcCCceEEE--EeCC--hhhhhhhcCCCCCcEEEEEcCCCC
Q 046627 251 ASDQYYLGHDLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFRGSFFF--NDGN--YRLLGALTGGSTIPSLAIVDPISN 324 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fkgk~~f--vD~~--~~~l~~~~~~~~~P~l~I~d~~~~ 324 (767)
++|+.....+.++++.|+++|- ....+ ..+ .++|+++++.+.| +|.+ ..+.+.+ +..++|+++++..+.
T Consensus 9 ~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~~~vd~~~~~~~~~~~-~v~~~Pt~~~~~~g~- 83 (101)
T cd03003 9 GDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTW---REFAKEMDGVIRIGAVNCGDDRMLCRSQ-GVNSYPSLYVFPSGM- 83 (101)
T ss_pred hhHHHHhcCCCeEEEEEECCCChHHHHhHHHH---HHHHHHhcCceEEEEEeCCccHHHHHHc-CCCccCEEEEEcCCC-
Confidence 5677777777888888888763 33444 555 7889999988766 4654 5666666 578999999997432
Q ss_pred ceeecCCccCCCHHHHHHH
Q 046627 325 QHYVASKEATFNYSSMADF 343 (767)
Q Consensus 325 ~kY~~~~~~~~t~e~L~~F 343 (767)
....|. +..+.+.|.+|
T Consensus 84 ~~~~~~--G~~~~~~l~~f 100 (101)
T cd03003 84 NPEKYY--GDRSKESLVKF 100 (101)
T ss_pred CcccCC--CCCCHHHHHhh
Confidence 333343 46888888887
No 175
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=96.07 E-value=0.015 Score=51.48 Aligned_cols=89 Identities=10% Similarity=0.121 Sum_probs=63.0
Q ss_pred echHHhhcC-CccEEEEeecCCc-Chhhh-cccCCchhhhhcCCceEEE--EeCC--hhhhhhhcCCCCCcEEEEEcCCC
Q 046627 251 ASDQYYLGH-DLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFRGSFFF--NDGN--YRLLGALTGGSTIPSLAIVDPIS 323 (767)
Q Consensus 251 etf~~~~~~-~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fkgk~~f--vD~~--~~~l~~~~~~~~~P~l~I~d~~~ 323 (767)
++|+..... +.+++++|++.+- ....+ ..+ .++++.+++.+.| +|.. ..+++.| +..++|+++++..+.
T Consensus 7 ~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~~~~l~~~~-~v~~~Pt~~~~~~g~ 82 (103)
T PF00085_consen 7 ENFEKFINESDKPVVVYFYAPWCPPCKAFKPIL---EKLAKEYKDNVKFAKVDCDENKELCKKY-GVKSVPTIIFFKNGK 82 (103)
T ss_dssp TTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTSHHHHHHT-TCSSSSEEEEEETTE
T ss_pred HHHHHHHHccCCCEEEEEeCCCCCcccccccee---cccccccccccccchhhhhccchhhhcc-CCCCCCEEEEEECCc
Confidence 567766665 8888888887652 33334 555 8889999866666 4654 5677777 578999999999654
Q ss_pred CceeecCCccCCCHHHHHHHHHH
Q 046627 324 NQHYVASKEATFNYSSMADFLHG 346 (767)
Q Consensus 324 ~~kY~~~~~~~~t~e~L~~Fi~~ 346 (767)
... .+. +..+.+.|.+||++
T Consensus 83 ~~~-~~~--g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 83 EVK-RYN--GPRNAESLIEFIEK 102 (103)
T ss_dssp EEE-EEE--SSSSHHHHHHHHHH
T ss_pred EEE-EEE--CCCCHHHHHHHHHc
Confidence 322 332 35899999999986
No 176
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=96.02 E-value=0.05 Score=59.71 Aligned_cols=181 Identities=12% Similarity=0.085 Sum_probs=100.4
Q ss_pred cCceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHH------HHHHHHHHccCceeeeccccCC
Q 046627 381 VDSIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELV------VREVFRAVKGYMKSLKNGYKNG 454 (767)
Q Consensus 381 ~~~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~------leeLak~fk~~~~iI~V~~d~~ 454 (767)
.+.|..|+.+||.+.+ .. .+..+|+||.|--.. +..... +-+|+.+.-....
T Consensus 33 kDRVi~LneKNfk~~l-Kk-----------yd~l~l~yh~p~~~d-k~~qkq~~m~E~~LELaAQVlE~~g--------- 90 (383)
T PF01216_consen 33 KDRVIDLNEKNFKRAL-KK-----------YDVLVLYYHEPVESD-KVSQKQFQMTELVLELAAQVLEDKG--------- 90 (383)
T ss_dssp S--CEEE-TTTHHHHH-HH------------SEEEEEEE--STSS-HHHHHHHHHHHHHHHHHHHHCGGCT---------
T ss_pred ccceEEcchhHHHHHH-Hh-----------hcEEEEEEecCCccC-HHHHHHHHHHHHHHHHHHHhccccC---------
Confidence 3468999999999988 21 556677777776333 322222 2344444433221
Q ss_pred cccchhhHHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCCCCc
Q 046627 455 QRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNNSHD 534 (767)
Q Consensus 455 ~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~~~~ 534 (767)
+-++.+|..++. .++++.++...+++++|..| ..+.|.|.++++-|+.||.......+.
T Consensus 91 ----------------igfg~VD~~Kd~---klAKKLgv~E~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~edPVe 149 (383)
T PF01216_consen 91 ----------------IGFGMVDSKKDA---KLAKKLGVEEEGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLEDPVE 149 (383)
T ss_dssp ----------------EEEEEEETTTTH---HHHHHHT--STTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHSSSEE
T ss_pred ----------------cceEEeccHHHH---HHHHhcCccccCcEEEEECC--cEEEecCccCHHHHHHHHHHhcccchh
Confidence 278888888763 46788999999999999655 368899999999999999998887765
Q ss_pred cccccccccc--CcccccccccCCCC-CCCCcCCCCCCccccccccccccccchhhhhccCCCCC----CCCCCcccccc
Q 046627 535 LLNENGIIWT--LPEKEGRYQNLFED-PSPTIGNKEASVTEEGLHEVILKSETSKAAERDSWTKS----HTSKSLHETAH 607 (767)
Q Consensus 535 l~~~~g~~~~--~~~~~~~~~~d~~~-ps~~~~~k~~~~~~~k~~~~~~~~r~~~a~~~~~~~~~----~~~~~wa~~~~ 607 (767)
.-+....+.. ..+...+..+.|++ .|.+ -.+|..|..+=|.-. .-.+.||....
T Consensus 150 iIn~~~e~~~Fe~ied~~klIGyFk~~~s~~-------------------yk~FeeAAe~F~p~IkFfAtfd~~vAk~L~ 210 (383)
T PF01216_consen 150 IINNKHELKAFERIEDDIKLIGYFKSEDSEH-------------------YKEFEEAAEHFQPYIKFFATFDKKVAKKLG 210 (383)
T ss_dssp EE-SHHHHHHHHH--SS-EEEEE-SSTTSHH-------------------HHHHHHHHHHCTTTSEEEEE-SHHHHHHHT
T ss_pred hhcChhhhhhhhhcccceeEEEEeCCCCcHH-------------------HHHHHHHHHhhcCceeEEEEecchhhhhcC
Confidence 3222211110 00112344566753 2333 346633333322111 12468888887
Q ss_pred CCCCCcEEEecCCCCCCC
Q 046627 608 GVVAGSILIATDKLLSVH 625 (767)
Q Consensus 608 ~~~~G~lLIA~P~L~~d~ 625 (767)
. ..|.+..-.|.| .+|
T Consensus 211 l-K~nev~fyepF~-~~p 226 (383)
T PF01216_consen 211 L-KLNEVDFYEPFM-DEP 226 (383)
T ss_dssp --STT-EEEE-TTS-SSE
T ss_pred c-cccceeeecccc-CCC
Confidence 6 589999999998 555
No 177
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=96.00 E-value=0.019 Score=52.28 Aligned_cols=88 Identities=9% Similarity=0.021 Sum_probs=59.0
Q ss_pred echHHhhcCCccEEEEeecCCc-Chhhh-cccCCchhhhhcCC------ceEEE--EeC--ChhhhhhhcCCCCCcEEEE
Q 046627 251 ASDQYYLGHDLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFR------GSFFF--NDG--NYRLLGALTGGSTIPSLAI 318 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fk------gk~~f--vD~--~~~~l~~~~~~~~~P~l~I 318 (767)
++|...+..+.++++.|+++|- ....+ ..+ +++|+.++ +++.| +|+ +..+.+.| +..++|++++
T Consensus 9 ~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~---~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~-~v~~~Ptl~~ 84 (108)
T cd02996 9 GNIDDILQSAELVLVNFYADWCRFSQMLHPIF---EEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRY-RINKYPTLKL 84 (108)
T ss_pred hhHHHHHhcCCEEEEEEECCCCHHHHhhHHHH---HHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhC-CCCcCCEEEE
Confidence 6788888888888888888762 23333 344 66666543 34665 465 35677777 6789999999
Q ss_pred EcCCCCceeecCCccCCCHHHHHHHH
Q 046627 319 VDPISNQHYVASKEATFNYSSMADFL 344 (767)
Q Consensus 319 ~d~~~~~kY~~~~~~~~t~e~L~~Fi 344 (767)
+..+......|. +..+.+.|.+||
T Consensus 85 ~~~g~~~~~~~~--g~~~~~~l~~fi 108 (108)
T cd02996 85 FRNGMMMKREYR--GQRSVEALAEFV 108 (108)
T ss_pred EeCCcCcceecC--CCCCHHHHHhhC
Confidence 975432334454 368899999885
No 178
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.00 E-value=0.048 Score=52.91 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=67.4
Q ss_pred chHHhhcCCccEEEEeecCC-cChhhh-cccCCchhhhhcCCceE--EEEeCC----hhhhhhhcCCCCCcEEEEEcCCC
Q 046627 252 SDQYYLGHDLTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRGSF--FFNDGN----YRLLGALTGGSTIPSLAIVDPIS 323 (767)
Q Consensus 252 tf~~~~~~~~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkgk~--~fvD~~----~~~l~~~~~~~~~P~l~I~d~~~ 323 (767)
.+......+.++++.|+.+| ...... ..+ .+++++|++++ ++++.+ ..+++.| ++.++|++++++.++
T Consensus 12 ~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l---~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~-~V~~iPt~v~~~~~G 87 (142)
T cd02950 12 PPEVALSNGKPTLVEFYADWCTVCQEMAPDV---AKLKQKYGDQVNFVMLNVDNPKWLPEIDRY-RVDGIPHFVFLDREG 87 (142)
T ss_pred CHHHHHhCCCEEEEEEECCcCHHHHHhHHHH---HHHHHHhccCeeEEEEEcCCcccHHHHHHc-CCCCCCEEEEECCCC
Confidence 35566678899999999876 233333 445 67788887654 445543 3456666 578899999998654
Q ss_pred CceeecCCccCCCHHHHHHHHHHHhcCCcCCCc
Q 046627 324 NQHYVASKEATFNYSSMADFLHGFLNGTLLPYQ 356 (767)
Q Consensus 324 ~~kY~~~~~~~~t~e~L~~Fi~~~l~Gkl~p~~ 356 (767)
.....+. +..+.+.|.++++.+++|.-.|..
T Consensus 88 ~~v~~~~--G~~~~~~l~~~l~~l~~~~~~~~~ 118 (142)
T cd02950 88 NEEGQSI--GLQPKQVLAQNLDALVAGEPLPYA 118 (142)
T ss_pred CEEEEEe--CCCCHHHHHHHHHHHHcCCCCCcc
Confidence 4333333 356789999999999998744444
No 179
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.92 E-value=0.14 Score=59.92 Aligned_cols=81 Identities=10% Similarity=0.058 Sum_probs=61.0
Q ss_pred CcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhcC
Q 046627 412 EDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSMT 491 (767)
Q Consensus 412 K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~ 491 (767)
..-+-.|++++|++|.+....+++++...+ + +..-.+|+..+ + .++.+|
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~---------------------------i~~~~id~~~~--~-~~~~~~ 165 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNP-N---------------------------ITHTMIDGALF--Q-DEVEAR 165 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-C---------------------------ceEEEEEchhC--H-hHHHhc
Confidence 344788999999999999999988877543 2 14555666654 2 356789
Q ss_pred CCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHh
Q 046627 492 QREVYPALVLFPAERKNAISFKGDISVADVIKFIADH 528 (767)
Q Consensus 492 ~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~ 528 (767)
+|.++|++++ .+ + ..+.|..+.++|++.+.+.
T Consensus 166 ~v~~VP~~~i--~~-~--~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 166 NIMAVPTVFL--NG-E--EFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred CCcccCEEEE--CC-c--EEEecCCCHHHHHHHHhcc
Confidence 9999999976 23 2 3578999999999998864
No 180
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=95.87 E-value=0.024 Score=51.05 Aligned_cols=88 Identities=9% Similarity=0.016 Sum_probs=61.0
Q ss_pred echHHh-hcCCccEEEEeecCC-cChhhh-cccCCchhhhhcCCceEEEE--eCC--hhhhhhhcCCCCCcEEEEEcCCC
Q 046627 251 ASDQYY-LGHDLTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRGSFFFN--DGN--YRLLGALTGGSTIPSLAIVDPIS 323 (767)
Q Consensus 251 etf~~~-~~~~~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkgk~~fv--D~~--~~~l~~~~~~~~~P~l~I~d~~~ 323 (767)
++|... .+.+.++++.|+++| .....+ ..+ .++|++|++.+.|+ |++ ..+.+.| +..++|+++++..+.
T Consensus 9 ~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~~-~i~~~Pt~~~~~~g~ 84 (104)
T cd03004 9 EDFPELVLNRKEPWLVDFYAPWCGPCQALLPEL---RKAARALKGKVKVGSVDCQKYESLCQQA-NIRAYPTIRLYPGNA 84 (104)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCcEEEEEECCchHHHHHHc-CCCcccEEEEEcCCC
Confidence 455554 566778888898876 333334 555 78899998887774 654 5666666 678999999998764
Q ss_pred CceeecCCccCCC-HHHHHHHH
Q 046627 324 NQHYVASKEATFN-YSSMADFL 344 (767)
Q Consensus 324 ~~kY~~~~~~~~t-~e~L~~Fi 344 (767)
+..+.|.+ ..+ .+.|.+||
T Consensus 85 ~~~~~~~G--~~~~~~~l~~~i 104 (104)
T cd03004 85 SKYHSYNG--WHRDADSILEFI 104 (104)
T ss_pred CCceEccC--CCCCHHHHHhhC
Confidence 45555543 455 88888875
No 181
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.65 E-value=0.014 Score=50.70 Aligned_cols=26 Identities=27% Similarity=0.671 Sum_probs=21.3
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHH
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVRE 435 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~lee 435 (767)
..+.-++.|+.+||++|++....|++
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~ 30 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKE 30 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHH
Confidence 34555888999999999999988864
No 182
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.59 E-value=0.027 Score=46.21 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=20.1
Q ss_pred EEEEEcCcChhhHHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREVF 437 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeLa 437 (767)
++.|+++||++|++....+.+..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~ 24 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG 24 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC
Confidence 57899999999999999988764
No 183
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.11 Score=51.47 Aligned_cols=109 Identities=9% Similarity=0.087 Sum_probs=82.2
Q ss_pred CCcEEEEEE-cCcChhhHHHHHHHHHHHHHHcc-CceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHh
Q 046627 411 NEDVVVLFS-SSWCGFCQRMELVVREVFRAVKG-YMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILK 488 (767)
Q Consensus 411 ~K~VLV~Fy-ApWCg~Ck~~~P~leeLak~fk~-~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~ 488 (767)
+|.|+++|| ..|++-|-.++-.|+.....|+. ...+++|+.|... ......++++++|+.+..-++. ++
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~--~~~~F~~k~~L~f~LLSD~~~~-------v~ 100 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPK--SHKKFAEKHGLTFPLLSDEDGE-------VA 100 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHH--HHHHHHHHhCCCceeeECCcHH-------HH
Confidence 778888888 78999999999999999999976 4678888887654 3457888999999988665443 44
Q ss_pred hcCCCC------------cccEEEEEeCCCeeEEEEeCC---CCHHHHHHHHHHh
Q 046627 489 SMTQRE------------VYPALVLFPAERKNAISFKGD---ISVADVIKFIADH 528 (767)
Q Consensus 489 ~~~~I~------------gyPTi~Lf~aggK~~i~y~G~---~t~e~L~~FI~k~ 528 (767)
..|++. .-+++++++++|+....+... -..+++++.|++.
T Consensus 101 ~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 101 EAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred HHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 456552 468899999999876666432 2466777777764
No 184
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=95.44 E-value=0.056 Score=48.86 Aligned_cols=89 Identities=13% Similarity=0.093 Sum_probs=59.8
Q ss_pred echHH-hhcCCccEEEEeecCCc-Chhhh-cccCCchhhhhcCCceEEE--EeCC----hhhhhhhcCCCCCcEEEEEcC
Q 046627 251 ASDQY-YLGHDLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFRGSFFF--NDGN----YRLLGALTGGSTIPSLAIVDP 321 (767)
Q Consensus 251 etf~~-~~~~~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fkgk~~f--vD~~----~~~l~~~~~~~~~P~l~I~d~ 321 (767)
.+|.. +.+.+.++++.|+++|= ....+ ..+ .++|+.+++.+.| +|.+ ..+.+.| +..++|++++++.
T Consensus 8 ~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~-~i~~~Pt~~~~~~ 83 (109)
T cd03002 8 KNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEY---AKAAKELDGLVQVAAVDCDEDKNKPLCGKY-GVQGFPTLKVFRP 83 (109)
T ss_pred hhHHHHHhcCCCeEEEEEECCCCHHHHhhChHH---HHHHHHhcCCceEEEEecCccccHHHHHHc-CCCcCCEEEEEeC
Confidence 44554 45678888888988663 23333 444 7778888876655 4543 3556666 5788999999997
Q ss_pred CC----CceeecCCccCCCHHHHHHHHH
Q 046627 322 IS----NQHYVASKEATFNYSSMADFLH 345 (767)
Q Consensus 322 ~~----~~kY~~~~~~~~t~e~L~~Fi~ 345 (767)
+. ...+.|. +..+.+.|.+||.
T Consensus 84 ~~~~~~~~~~~~~--G~~~~~~l~~fi~ 109 (109)
T cd03002 84 PKKASKHAVEDYN--GERSAKAIVDFVL 109 (109)
T ss_pred CCccccccccccc--CccCHHHHHHHhC
Confidence 65 1234453 4789999999973
No 185
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.43 E-value=0.037 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.661 Sum_probs=18.4
Q ss_pred EEEEEcCcChhhHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeL 436 (767)
++.|..+||++|++....|++.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~ 22 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK 22 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT
T ss_pred cEEEEcCCCcCHHHHHHHHHHc
Confidence 4779999999999999888543
No 186
>PRK10996 thioredoxin 2; Provisional
Probab=95.28 E-value=0.065 Score=51.73 Aligned_cols=90 Identities=12% Similarity=0.081 Sum_probs=63.7
Q ss_pred echHHhhcCCccEEEEeecCCcC-hhhh-cccCCchhhhhcCCceEEEE--eC--ChhhhhhhcCCCCCcEEEEEcCCCC
Q 046627 251 ASDQYYLGHDLTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRGSFFFN--DG--NYRLLGALTGGSTIPSLAIVDPISN 324 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkgk~~fv--D~--~~~~l~~~~~~~~~P~l~I~d~~~~ 324 (767)
++|..+...+.++++.|+.+|-. ...+ ..+ .++++++.+.+.|+ |. +..+.+.| ++.++|++++++. .+
T Consensus 43 ~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~~~l~~~~-~V~~~Ptlii~~~-G~ 117 (139)
T PRK10996 43 ETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIF---EDVAAERSGKVRFVKVNTEAERELSARF-RIRSIPTIMIFKN-GQ 117 (139)
T ss_pred HHHHHHHhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCeEEEEEeCCCCHHHHHhc-CCCccCEEEEEEC-CE
Confidence 56777788889999999987733 3333 455 77788888888774 54 36777777 5789999999973 22
Q ss_pred ceeecCCccCCCHHHHHHHHHHH
Q 046627 325 QHYVASKEATFNYSSMADFLHGF 347 (767)
Q Consensus 325 ~kY~~~~~~~~t~e~L~~Fi~~~ 347 (767)
....+. +..+.+.|.+|+++.
T Consensus 118 ~v~~~~--G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 118 VVDMLN--GAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEEc--CCCCHHHHHHHHHHh
Confidence 223333 357889999999874
No 187
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.011 Score=61.18 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=56.6
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
.+.+++.|||+||..|++|..++..+++.++. . .+.+.+.+.. ..++..
T Consensus 17 ~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~-~---------------------------~~~k~~a~~~---~eis~~ 65 (227)
T KOG0911|consen 17 GKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKN-A---------------------------QFLKLEAEEF---PEISNL 65 (227)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHhhhh-h---------------------------eeeeehhhhh---hHHHHH
Confidence 78899999999999999999999999998832 2 4555555443 234557
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHH
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVAD 520 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~ 520 (767)
+.+...|++.++ .+++...+..|......
T Consensus 66 ~~v~~vp~~~~~-~~~~~v~~l~~~~~~~~ 94 (227)
T KOG0911|consen 66 IAVEAVPYFVFF-FLGEKVDRLSGADPPFL 94 (227)
T ss_pred HHHhcCceeeee-ecchhhhhhhccCcHHH
Confidence 889999999999 44444445555444433
No 188
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=95.22 E-value=0.059 Score=49.44 Aligned_cols=90 Identities=11% Similarity=-0.004 Sum_probs=59.4
Q ss_pred echHHhh---cCCccEEEEeecCCc-Chhhh-cccCCchhhhhcCCce-EEE--EeCC---hhhhhhhcCCCCCcEEEEE
Q 046627 251 ASDQYYL---GHDLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFRGS-FFF--NDGN---YRLLGALTGGSTIPSLAIV 319 (767)
Q Consensus 251 etf~~~~---~~~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fkgk-~~f--vD~~---~~~l~~~~~~~~~P~l~I~ 319 (767)
++|+.+. ..+.++++.|+.+|= ....+ ..+ .++|+.+++. +.| +|.+ ..+.....+..++|+++++
T Consensus 9 ~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~---~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f 85 (109)
T cd02993 9 AEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASY---EELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFF 85 (109)
T ss_pred HHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHH---HHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEE
Confidence 4455544 457899999988662 23333 344 7778888874 655 4543 3444433367889999999
Q ss_pred cCCCCceeecCCccCCCHHHHHHHH
Q 046627 320 DPISNQHYVASKEATFNYSSMADFL 344 (767)
Q Consensus 320 d~~~~~kY~~~~~~~~t~e~L~~Fi 344 (767)
+.+....+.|++. .++.++|..||
T Consensus 86 ~~~~~~~~~y~g~-~~~~~~l~~f~ 109 (109)
T cd02993 86 PKNSRQPIKYPSE-QRDVDSLLMFV 109 (109)
T ss_pred cCCCCCceeccCC-CCCHHHHHhhC
Confidence 8765556666542 47999998885
No 189
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.15 E-value=0.26 Score=53.40 Aligned_cols=56 Identities=11% Similarity=0.149 Sum_probs=39.3
Q ss_pred ceEEEE--eCC--hhhhhhhcCCCCCcEEEEEcCCCCceeecCCccCCCHHHHHHHHHHHhcC
Q 046627 292 GSFFFN--DGN--YRLLGALTGGSTIPSLAIVDPISNQHYVASKEATFNYSSMADFLHGFLNG 350 (767)
Q Consensus 292 gk~~fv--D~~--~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~l~G 350 (767)
|+++|. |++ ..++..| ...+|||+.+|..+.-.+=.|. +.++.+.|.+||+.-++-
T Consensus 49 ~kvvwg~VDcd~e~~ia~ky-~I~KyPTlKvfrnG~~~~rEYR--g~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 49 GKVVWGKVDCDKEDDIADKY-HINKYPTLKVFRNGEMMKREYR--GQRSVEALIEFIEKQLSD 108 (375)
T ss_pred cceEEEEcccchhhHHhhhh-ccccCceeeeeeccchhhhhhc--cchhHHHHHHHHHHHhcc
Confidence 889984 664 4666666 4678999999996532221222 368999999999986543
No 190
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=95.04 E-value=0.095 Score=46.38 Aligned_cols=87 Identities=10% Similarity=0.147 Sum_probs=56.8
Q ss_pred chHHhh-cC-CccEEEEeecCC-cChhhh-cccCCchhhhhcCCceEEEE--eCC--hhhhhhhcCCCCCcEEEEEcCCC
Q 046627 252 SDQYYL-GH-DLTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRGSFFFN--DGN--YRLLGALTGGSTIPSLAIVDPIS 323 (767)
Q Consensus 252 tf~~~~-~~-~~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkgk~~fv--D~~--~~~l~~~~~~~~~P~l~I~d~~~ 323 (767)
+|.... .. +.++++.|+++| ...... ..+ .+++..|++.+.|+ |.+ ..+.+.| +...+|++++++.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~l~~~~-~i~~~Pt~~~~~~g- 76 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLL---ERLAEEYQGQFVLAKVNCDAQPQIAQQF-GVQALPTVYLFAAG- 76 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhCCcEEEEEEeccCCHHHHHHc-CCCCCCEEEEEeCC-
Confidence 344333 44 678888898866 333333 445 77888998887664 653 5666766 57789999999832
Q ss_pred CceeecCCccCCCHHHHHHHHH
Q 046627 324 NQHYVASKEATFNYSSMADFLH 345 (767)
Q Consensus 324 ~~kY~~~~~~~~t~e~L~~Fi~ 345 (767)
.....+. +..+.+.|..|++
T Consensus 77 ~~~~~~~--g~~~~~~l~~~l~ 96 (96)
T cd02956 77 QPVDGFQ--GAQPEEQLRQMLD 96 (96)
T ss_pred EEeeeec--CCCCHHHHHHHhC
Confidence 2222232 3578889988873
No 191
>PHA03050 glutaredoxin; Provisional
Probab=94.87 E-value=0.039 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEEcCcChhhHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeL 436 (767)
++.|..+|||+|++....|.++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc
Confidence 7779999999999998888765
No 192
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=94.83 E-value=0.13 Score=48.07 Aligned_cols=72 Identities=11% Similarity=0.071 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHc-cCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhcCCCCc----ccEEE
Q 046627 426 CQRMELVVREVFRAVK-GYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQREV----YPALV 500 (767)
Q Consensus 426 Ck~~~P~leeLak~fk-~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~g----yPTi~ 500 (767)
-......+.++|+.|+ ++. .++.+|.+..+. ....|++.. +|++.
T Consensus 33 ~~~~~~~~~~vAk~fk~gki---------------------------~Fv~~D~~~~~~---~l~~fgl~~~~~~~P~~~ 82 (111)
T cd03073 33 TNYWRNRVLKVAKDFPDRKL---------------------------NFAVADKEDFSH---ELEEFGLDFSGGEKPVVA 82 (111)
T ss_pred HHHHHHHHHHHHHHCcCCeE---------------------------EEEEEcHHHHHH---HHHHcCCCcccCCCCEEE
Confidence 4567888999999999 564 445566554332 234688873 99999
Q ss_pred EEeCCCeeEEEEeCCC-CHHHHHHHHHHh
Q 046627 501 LFPAERKNAISFKGDI-SVADVIKFIADH 528 (767)
Q Consensus 501 Lf~aggK~~i~y~G~~-t~e~L~~FI~k~ 528 (767)
++..++ ....+.+.. +.++|.+|+++.
T Consensus 83 i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 83 IRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred EEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 997655 223356777 999999999864
No 193
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.78 E-value=0.1 Score=55.61 Aligned_cols=116 Identities=12% Similarity=0.118 Sum_probs=62.9
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccc-cCCccc--------chh-hHHhhccccCcE--EEEec
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGY-KNGQRD--------LNG-EYLKNINFKLPR--IYLMD 477 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~-d~~~~~--------~~~-~~v~~~~~~~~v--Ia~ID 477 (767)
..+.+++.|.-+-|++|+++.+.+.++.+.-+-....+-+.. ...... .+. ..+..+...+.. +....
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~ 195 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPA 195 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCccc
Confidence 377889999999999999999988776543211122222211 110000 000 011111111110 00000
Q ss_pred CCcccch------HHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHH
Q 046627 478 CTLNDCS------LILKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIA 526 (767)
Q Consensus 478 ~t~ND~~------~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~ 526 (767)
....+|. ..+...++|+|+||+++-+.+| .+....|..+.+.|.+.|.
T Consensus 196 ~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 196 SIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 0011111 2245678999999999986444 3456789999999998875
No 194
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.74 E-value=0.069 Score=54.29 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=60.8
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
..-|++.||-|--..|+-|...++.||+.+-+- .|.+|++.... -|+.+
T Consensus 84 S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eT----------------------------rFikvnae~~P---Flv~k 132 (211)
T KOG1672|consen 84 SEKVVCHFYRPEFFRCKIMDKHLEILAKRHVET----------------------------RFIKVNAEKAP---FLVTK 132 (211)
T ss_pred CceEEEEEEcCCCcceehHHHHHHHHHHhcccc----------------------------eEEEEecccCc---eeeee
Confidence 677899999999999999999999999988542 45556655432 24567
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeC--------CCCHHHHHHHHHH
Q 046627 491 TQREVYPALVLFPAERKNAISFKG--------DISVADVIKFIAD 527 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G--------~~t~e~L~~FI~k 527 (767)
.+|..+|++.+|.. ++....+.| ..+.+.|..-|.+
T Consensus 133 L~IkVLP~v~l~k~-g~~~D~iVGF~dLGnkDdF~te~LE~rL~~ 176 (211)
T KOG1672|consen 133 LNIKVLPTVALFKN-GKTVDYVVGFTDLGNKDDFTTETLENRLAK 176 (211)
T ss_pred eeeeEeeeEEEEEc-CEEEEEEeeHhhcCCCCcCcHHHHHHHHhh
Confidence 89999999999954 454444444 2345555555544
No 195
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=94.71 E-value=0.086 Score=45.56 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=28.1
Q ss_pred EEEEEcCcChhhHHHHHHHHHHHHHHccCceeeec
Q 046627 415 VVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKN 449 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V 449 (767)
++.|+.++|++|..+.+.++++.+...++..+..+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~ 35 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYR 35 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEe
Confidence 46799999999999999999998666666554433
No 196
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=94.70 E-value=0.11 Score=46.10 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=57.6
Q ss_pred echHHhhc-CCccEEEEeecCCcC-hhhh-cccCCchhhhhcCC--ceEEEE--eCC---hhhhhhhcCCCCCcEEEEEc
Q 046627 251 ASDQYYLG-HDLTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFR--GSFFFN--DGN---YRLLGALTGGSTIPSLAIVD 320 (767)
Q Consensus 251 etf~~~~~-~~~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fk--gk~~fv--D~~---~~~l~~~~~~~~~P~l~I~d 320 (767)
.+|..... .+.++++.|++++-. ...+ ..+ .++++.++ +++.|+ |.+ ..+.+.| +..++|++++++
T Consensus 8 ~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~-~i~~~P~~~~~~ 83 (105)
T cd02998 8 SNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEY---EKLAAVFANEDDVVIAKVDADEANKDLAKKY-GVSGFPTLKFFP 83 (105)
T ss_pred hcHHHHhcCCCCcEEEEEECCCCHHHHhhChHH---HHHHHHhCCCCCEEEEEEECCCcchhhHHhC-CCCCcCEEEEEe
Confidence 34444444 455888888876632 2333 444 77787776 557664 543 3556666 578899999999
Q ss_pred CCCCceeecCCccCCCHHHHHHHH
Q 046627 321 PISNQHYVASKEATFNYSSMADFL 344 (767)
Q Consensus 321 ~~~~~kY~~~~~~~~t~e~L~~Fi 344 (767)
.+....+.+.+ .++.+.|.+||
T Consensus 84 ~~~~~~~~~~g--~~~~~~l~~~i 105 (105)
T cd02998 84 KGSTEPVKYEG--GRDLEDLVKFV 105 (105)
T ss_pred CCCCCccccCC--ccCHHHHHhhC
Confidence 76555666644 68999999885
No 197
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=94.64 E-value=0.47 Score=51.14 Aligned_cols=85 Identities=7% Similarity=-0.009 Sum_probs=61.4
Q ss_pred cccccceechHHhhcCCccEEEEeecCCcChhhhcccCCchhhhhcCCce---EEE--EeCC--hhhhhhhcCCCCCcEE
Q 046627 244 KEQLIPEASDQYYLGHDLTTAKDVKVGEKSSSQISMSGDPQLEFQGFRGS---FFF--NDGN--YRLLGALTGGSTIPSL 316 (767)
Q Consensus 244 sn~lPlVetf~~~~~~~~p~~~~f~~~~e~s~~~e~l~~~~~~A~~fkgk---~~f--vD~~--~~~l~~~~~~~~~P~l 316 (767)
.+.+++|+.|..|++|++.++.++- ++..+.++. +-+ .|+. ..++..| +..+||++
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWd----------------eVG~elkdig~PikVGKlDaT~f~aiAnef-giqGYPTI 104 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWD----------------EVGHELKDIGLPIKVGKLDATRFPAIANEF-GIQGYPTI 104 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhH----------------HhCcchhhcCCceeecccccccchhhHhhh-ccCCCceE
Confidence 4567999999999999999998873 223333321 222 2654 4666667 68899999
Q ss_pred EEEcCCCCceeecCCccCCCHHHHHHHHHHHhc
Q 046627 317 AIVDPISNQHYVASKEATFNYSSMADFLHGFLN 349 (767)
Q Consensus 317 ~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~l~ 349 (767)
.++.. +.-|.|.+ .++.+.|..|-+..-.
T Consensus 105 k~~kg--d~a~dYRG--~R~Kd~iieFAhR~a~ 133 (468)
T KOG4277|consen 105 KFFKG--DHAIDYRG--GREKDAIIEFAHRCAA 133 (468)
T ss_pred EEecC--CeeeecCC--CccHHHHHHHHHhccc
Confidence 99983 45677764 7899999999998643
No 198
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=94.56 E-value=0.19 Score=47.55 Aligned_cols=88 Identities=8% Similarity=-0.024 Sum_probs=57.8
Q ss_pred echHHhhcCCccEEEEeec--CCcC-hhhhcccCCchhhhhcC---CceEEEE--eCC-------hhhhhhhcCCC--CC
Q 046627 251 ASDQYYLGHDLTTAKDVKV--GEKS-SSQISMSGDPQLEFQGF---RGSFFFN--DGN-------YRLLGALTGGS--TI 313 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~--~~e~-s~~~e~l~~~~~~A~~f---kgk~~fv--D~~-------~~~l~~~~~~~--~~ 313 (767)
.||+.+......+++.|+. +|-. .+.+ +++|.+| ...++++ |++ ..+.+.| +++ +|
T Consensus 9 ~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~------~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y-~I~~~gy 81 (116)
T cd03007 9 VTFYKVIPKFKYSLVKFDTAYPYGEKHEAF------TRLAESSASATDDLLVAEVGIKDYGEKLNMELGERY-KLDKESY 81 (116)
T ss_pred hhHHHHHhcCCcEEEEEeCCCCCCCChHHH------HHHHHHHHhhcCceEEEEEecccccchhhHHHHHHh-CCCcCCC
Confidence 6788888888888888888 4422 1233 4445554 2347774 662 4566667 455 89
Q ss_pred cEEEEEcCCC-CceeecCCccCCCHHHHHHHHHH
Q 046627 314 PSLAIVDPIS-NQHYVASKEATFNYSSMADFLHG 346 (767)
Q Consensus 314 P~l~I~d~~~-~~kY~~~~~~~~t~e~L~~Fi~~ 346 (767)
|+|.+|..+. ...-.|++ ..++.+.|.+||.+
T Consensus 82 PTl~lF~~g~~~~~~~Y~G-~~r~~~~lv~~v~~ 114 (116)
T cd03007 82 PVIYLFHGGDFENPVPYSG-ADVTVDALQRFLKG 114 (116)
T ss_pred CEEEEEeCCCcCCCccCCC-CcccHHHHHHHHHh
Confidence 9999999652 22334443 13999999999975
No 199
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=94.48 E-value=0.15 Score=45.33 Aligned_cols=88 Identities=7% Similarity=0.055 Sum_probs=57.5
Q ss_pred echHHh-hcCCccEEEEeecCCc-Chhhh-cccCCchhhhhcCCc--eEEEE--eCC-hhhhhhhcCCCCCcEEEEEcCC
Q 046627 251 ASDQYY-LGHDLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFRG--SFFFN--DGN-YRLLGALTGGSTIPSLAIVDPI 322 (767)
Q Consensus 251 etf~~~-~~~~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fkg--k~~fv--D~~-~~~l~~~~~~~~~P~l~I~d~~ 322 (767)
.+|... .+.+.++++.|++++- ....+ ..+ .++++.+++ ++.|+ |.+ ..+...+ +..++|+++++..+
T Consensus 8 ~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~-~~~~~Pt~~~~~~~ 83 (104)
T cd02995 8 KNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDATANDVPSEF-VVDGFPTILFFPAG 83 (104)
T ss_pred hhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCcchhhhhhc-cCCCCCEEEEEcCC
Confidence 456554 4556788888887663 33333 555 778888876 46664 654 3444444 45789999999865
Q ss_pred C-CceeecCCccCCCHHHHHHHH
Q 046627 323 S-NQHYVASKEATFNYSSMADFL 344 (767)
Q Consensus 323 ~-~~kY~~~~~~~~t~e~L~~Fi 344 (767)
. ...+.|. +..+.+.|.+||
T Consensus 84 ~~~~~~~~~--g~~~~~~l~~fi 104 (104)
T cd02995 84 DKSNPIKYE--GDRTLEDLIKFI 104 (104)
T ss_pred CcCCceEcc--CCcCHHHHHhhC
Confidence 4 2344554 368899998885
No 200
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=94.37 E-value=0.16 Score=47.36 Aligned_cols=101 Identities=13% Similarity=0.110 Sum_probs=67.8
Q ss_pred eeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHH---HccCceeeeccccCCcccchhh
Q 046627 385 PRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRA---VKGYMKSLKNGYKNGQRDLNGE 461 (767)
Q Consensus 385 ~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~---fk~~~~iI~V~~d~~~~~~~~~ 461 (767)
.+++.+|+..+.+ .+.+..+.||. -..-......+.++|+. ++++.
T Consensus 2 ~e~t~e~~~~~~~------------~~~~~~~l~f~--~~~~~~~~~~~~~vAk~~~~~kgki----------------- 50 (111)
T cd03072 2 REITFENAEELTE------------EGLPFLILFHD--KDDLESLKEFKQAVARQLISEKGAI----------------- 50 (111)
T ss_pred cccccccHHHHhc------------CCCCeEEEEec--chHHHHHHHHHHHHHHHHHhcCceE-----------------
Confidence 4667788876662 14455556662 22336788899999999 88765
Q ss_pred HHhhccccCcEEEEecCCcccchHHHhhcCCCCc--ccEEEEEeCCCeeEEE-EeCCCCHHHHHHHHHHhC
Q 046627 462 YLKNINFKLPRIYLMDCTLNDCSLILKSMTQREV--YPALVLFPAERKNAIS-FKGDISVADVIKFIADHG 529 (767)
Q Consensus 462 ~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~g--yPTi~Lf~aggK~~i~-y~G~~t~e~L~~FI~k~~ 529 (767)
.+..+|.+..+. ....||+.. +|++.+...++..... +.+..+.++|.+|+++..
T Consensus 51 ----------~Fv~~d~~~~~~---~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 51 ----------NFLTADGDKFRH---PLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred ----------EEEEEechHhhh---HHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHh
Confidence 444555554332 234688876 9999999765422333 668899999999999864
No 201
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.35 E-value=0.8 Score=53.66 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=59.8
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
+..-+-.|+.+-|++|......+++++..... +..-.+|+..+ + .+..+
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~----------------------------i~~~~id~~~~--~-~~~~~ 165 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNPN----------------------------ISHTMIDGALF--Q-DEVEA 165 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC----------------------------ceEEEEEchhC--H-HHHHh
Confidence 34447889999999999888888888776542 13444666544 2 35678
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHh
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADVIKFIADH 528 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~ 528 (767)
|++.++|++++ .+ + ..+.|..+.+++.+.+.+.
T Consensus 166 ~~v~~VP~~~i--~~-~--~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 166 LGIQGVPAVFL--NG-E--EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred cCCcccCEEEE--CC-c--EEEecCCCHHHHHHHHhhc
Confidence 99999999987 23 2 3478999999998888765
No 202
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.28 E-value=0.08 Score=46.83 Aligned_cols=25 Identities=24% Similarity=0.566 Sum_probs=21.3
Q ss_pred EEEEEcCcChhhHHHHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREVFRA 439 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeLak~ 439 (767)
++.|..+||++|.+....++++...
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~ 26 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIE 26 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcc
Confidence 6789999999999999998887543
No 203
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=94.28 E-value=0.11 Score=48.59 Aligned_cols=87 Identities=8% Similarity=-0.091 Sum_probs=59.7
Q ss_pred echHHh---hcCCccEEEEeecCCcC-hhhh-cccCCchhhhhcCCceEEEE--eCC--hhhh-hhhcCCCCCcEEEEEc
Q 046627 251 ASDQYY---LGHDLTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRGSFFFN--DGN--YRLL-GALTGGSTIPSLAIVD 320 (767)
Q Consensus 251 etf~~~---~~~~~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkgk~~fv--D~~--~~~l-~~~~~~~~~P~l~I~d 320 (767)
++|..+ .....++++.|+++|=. ...+ ..+ .++|+++++.+.|+ |++ ..++ +.| +..++|++.++.
T Consensus 17 ~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~---~~la~~~~~~v~~~~Vd~d~~~~l~~~~~-~I~~~PTl~lf~ 92 (113)
T cd03006 17 GQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEF---EQVAQKLSDQVLFVAINCWWPQGKCRKQK-HFFYFPVIHLYY 92 (113)
T ss_pred hhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEECCCChHHHHHhc-CCcccCEEEEEE
Confidence 566654 67788888889987743 3334 555 88899999987774 764 4565 355 578899999997
Q ss_pred CCCCceeecCCccCCCHHHHHHHH
Q 046627 321 PISNQHYVASKEATFNYSSMADFL 344 (767)
Q Consensus 321 ~~~~~kY~~~~~~~~t~e~L~~Fi 344 (767)
.+. ....|. +..+.+.|..|+
T Consensus 93 ~g~-~~~~y~--G~~~~~~i~~~~ 113 (113)
T cd03006 93 RSR-GPIEYK--GPMRAPYMEKFV 113 (113)
T ss_pred CCc-cceEEe--CCCCHHHHHhhC
Confidence 443 333343 367888888763
No 204
>PRK09381 trxA thioredoxin; Provisional
Probab=94.26 E-value=0.2 Score=45.59 Aligned_cols=91 Identities=14% Similarity=0.081 Sum_probs=61.7
Q ss_pred echH-HhhcCCccEEEEeecCCcC-hhhh-cccCCchhhhhcCCceEEE--EeCC--hhhhhhhcCCCCCcEEEEEcCCC
Q 046627 251 ASDQ-YYLGHDLTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRGSFFF--NDGN--YRLLGALTGGSTIPSLAIVDPIS 323 (767)
Q Consensus 251 etf~-~~~~~~~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkgk~~f--vD~~--~~~l~~~~~~~~~P~l~I~d~~~ 323 (767)
++|. .+...+.++++.|+.++-. .... ..+ +++++++.+++.| +|.+ ..+.+.| +...+|++++++. +
T Consensus 11 ~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~---~~l~~~~~~~~~~~~vd~~~~~~~~~~~-~v~~~Pt~~~~~~-G 85 (109)
T PRK09381 11 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNPGTAPKY-GIRGIPTLLLFKN-G 85 (109)
T ss_pred hhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHH---HHHHHHhCCCcEEEEEECCCChhHHHhC-CCCcCCEEEEEeC-C
Confidence 3444 3566678888889876633 3333 555 7788999887655 4654 5555666 5778999999973 3
Q ss_pred CceeecCCccCCCHHHHHHHHHHHh
Q 046627 324 NQHYVASKEATFNYSSMADFLHGFL 348 (767)
Q Consensus 324 ~~kY~~~~~~~~t~e~L~~Fi~~~l 348 (767)
...+.+. +..+.+.|..|++..+
T Consensus 86 ~~~~~~~--G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 86 EVAATKV--GALSKGQLKEFLDANL 108 (109)
T ss_pred eEEEEec--CCCCHHHHHHHHHHhc
Confidence 3444553 3578899999998864
No 205
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.21 E-value=0.055 Score=51.45 Aligned_cols=32 Identities=16% Similarity=0.453 Sum_probs=28.4
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHHc
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAVK 441 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk 441 (767)
..+.+++.|+.++|+||+++.|.+.++...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 37889999999999999999999999877664
No 206
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.26 Score=53.51 Aligned_cols=119 Identities=19% Similarity=0.257 Sum_probs=83.7
Q ss_pred ceeeecccccccccccccCCcccccccCCCcEEEEEEcC----cChhhHHHHHHHHHHHHHHccCceeeeccccCCcccc
Q 046627 383 SIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSS----WCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDL 458 (767)
Q Consensus 383 ~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyAp----WCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~ 458 (767)
.|..+++++|..++ ... .-+--++|.|.|. -|.-|+.+..++.-++..+..+...
T Consensus 41 ~VI~~n~d~~~~~v-~~~--------prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~------------ 99 (331)
T KOG2603|consen 41 GVIRMNDDKFSKFV-RPP--------PRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPF------------ 99 (331)
T ss_pred CeEEecCcchhhhc-cCC--------CCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCC------------
Confidence 48999999999999 332 1245677788775 6999999999999999988654311
Q ss_pred hhhHHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEE-eCCCe--eEEEEeC---CCCHHHHHHHHHHhCCCC
Q 046627 459 NGEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLF-PAERK--NAISFKG---DISVADVIKFIADHGNNS 532 (767)
Q Consensus 459 ~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf-~aggK--~~i~y~G---~~t~e~L~~FI~k~~~~~ 532 (767)
-|-.++.+..+|.++ .+. +-+.++++..|++++| |+.++ ....+.+ ....|.+.+|++..+...
T Consensus 100 -------sn~tklFF~~Vd~~e--~p~-~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~ 169 (331)
T KOG2603|consen 100 -------SNGTKLFFCMVDYDE--SPQ-VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVN 169 (331)
T ss_pred -------CCcceEEEEEEeccc--cHH-HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhe
Confidence 011245788888765 343 4567899999999999 44433 2223322 334999999999876544
No 207
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=93.84 E-value=0.27 Score=46.65 Aligned_cols=90 Identities=12% Similarity=0.081 Sum_probs=60.3
Q ss_pred echH-HhhcCCccEEEEeecCCcC---hh--hh-cccCCchhhhhcC--CceEEEE--eC--ChhhhhhhcCCCCCcEEE
Q 046627 251 ASDQ-YYLGHDLTTAKDVKVGEKS---SS--QI-SMSGDPQLEFQGF--RGSFFFN--DG--NYRLLGALTGGSTIPSLA 317 (767)
Q Consensus 251 etf~-~~~~~~~p~~~~f~~~~e~---s~--~~-e~l~~~~~~A~~f--kgk~~fv--D~--~~~~l~~~~~~~~~P~l~ 317 (767)
++|. .+.+++.+++.+|.+.+-. .. .. ..+ .++|.++ .+++.|+ |+ +..+++.| ++.++||++
T Consensus 17 ~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~---~~~aa~~l~~~~v~~~kVD~d~~~~La~~~-~I~~iPTl~ 92 (120)
T cd03065 17 KNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELV---LELAAQVLEDKGIGFGLVDSKKDAKVAKKL-GLDEEDSIY 92 (120)
T ss_pred hhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhH---HHHHHHHhhcCCCEEEEEeCCCCHHHHHHc-CCccccEEE
Confidence 5666 4667777888777765531 22 11 222 4567676 6777774 65 46777877 678999999
Q ss_pred EEcCCCCceeecCCccCCCHHHHHHHHHHHh
Q 046627 318 IVDPISNQHYVASKEATFNYSSMADFLHGFL 348 (767)
Q Consensus 318 I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~l 348 (767)
+|..+. ...|. +..+.+.|.+||.+.+
T Consensus 93 lfk~G~--~v~~~--G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 93 VFKDDE--VIEYD--GEFAADTLVEFLLDLI 119 (120)
T ss_pred EEECCE--EEEee--CCCCHHHHHHHHHHHh
Confidence 998443 22232 4689999999999854
No 208
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=93.76 E-value=0.18 Score=44.85 Aligned_cols=86 Identities=10% Similarity=0.028 Sum_probs=55.2
Q ss_pred echHHhhcCCccEEEEeecCCcC-hhhh-cccCCchhhhhcCCc---eEEE--EeCC--hhhhhhhcCCCCCcEEEEEcC
Q 046627 251 ASDQYYLGHDLTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRG---SFFF--NDGN--YRLLGALTGGSTIPSLAIVDP 321 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkg---k~~f--vD~~--~~~l~~~~~~~~~P~l~I~d~ 321 (767)
++|......+ ++++.|+++|=. ...+ ..+ +++|+++++ ++.| +|.+ ..+.+.| +...+|+++++..
T Consensus 8 ~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~-~v~~~Pt~~~~~~ 82 (102)
T cd03005 8 DNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTW---EQLAKKFNNENPSVKIAKVDCTQHRELCSEF-QVRGYPTLLLFKD 82 (102)
T ss_pred HHHHHHhhcC-CEEEEEECCCCHHHHHhCHHH---HHHHHHHhccCCcEEEEEEECCCChhhHhhc-CCCcCCEEEEEeC
Confidence 4566666555 577778776532 3333 444 777888876 5655 4653 5666666 5788999999974
Q ss_pred CCCceeecCCccCCCHHHHHHHH
Q 046627 322 ISNQHYVASKEATFNYSSMADFL 344 (767)
Q Consensus 322 ~~~~kY~~~~~~~~t~e~L~~Fi 344 (767)
+ .....+. +..+.+.|.+||
T Consensus 83 g-~~~~~~~--G~~~~~~l~~~i 102 (102)
T cd03005 83 G-EKVDKYK--GTRDLDSLKEFV 102 (102)
T ss_pred C-CeeeEee--CCCCHHHHHhhC
Confidence 4 3344443 367888888875
No 209
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.60 E-value=0.11 Score=47.49 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=19.0
Q ss_pred EEEEEcCcChhhHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeL 436 (767)
++.|..|||++|++....|.++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~ 31 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL 31 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 7779999999999999877665
No 210
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=93.51 E-value=0.3 Score=46.87 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHccC-ceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhcCCCC--cccEEEEEe
Q 046627 427 QRMELVVREVFRAVKGY-MKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQRE--VYPALVLFP 503 (767)
Q Consensus 427 k~~~P~leeLak~fk~~-~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~--gyPTi~Lf~ 503 (767)
......+.++|+.|+++ . .+..+|.+..+. +...|++. ++|+++++.
T Consensus 40 ~~~~~~l~~vAk~~kgk~i---------------------------~Fv~vd~~~~~~---~~~~fgl~~~~~P~v~i~~ 89 (130)
T cd02983 40 NKYLEILKSVAEKFKKKPW---------------------------GWLWTEAGAQLD---LEEALNIGGFGYPAMVAIN 89 (130)
T ss_pred HHHHHHHHHHHHHhcCCcE---------------------------EEEEEeCcccHH---HHHHcCCCccCCCEEEEEe
Confidence 36678899999999986 3 455666665532 34578884 599999997
Q ss_pred CCCeeEEEEeCCCCHHHHHHHHHHhCCCCC
Q 046627 504 AERKNAISFKGDISVADVIKFIADHGNNSH 533 (767)
Q Consensus 504 aggK~~i~y~G~~t~e~L~~FI~k~~~~~~ 533 (767)
..+.....+.|..+.++|.+|+++...-..
T Consensus 90 ~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 90 FRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred cccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 755322227799999999999999876554
No 211
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=93.50 E-value=0.24 Score=43.02 Aligned_cols=87 Identities=9% Similarity=0.064 Sum_probs=57.2
Q ss_pred chHHhhcCCccEEEEeecCC-cChhhh-cccCCchhhhhcC--CceEEEE--eCC--hhhhhhhcCCCCCcEEEEEcCCC
Q 046627 252 SDQYYLGHDLTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGF--RGSFFFN--DGN--YRLLGALTGGSTIPSLAIVDPIS 323 (767)
Q Consensus 252 tf~~~~~~~~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~f--kgk~~fv--D~~--~~~l~~~~~~~~~P~l~I~d~~~ 323 (767)
+|......+.++++.|++++ .....+ ..+ .++++.+ ++.+.|+ |.. ..+.+.| +...+|++++++++.
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEY---EKLAKELKGDGKVVVAKVDCTANNDLCSEY-GVRGYPTIKLFPNGS 82 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHH---HHHHHHhccCCceEEEEeeccchHHHHHhC-CCCCCCEEEEEcCCC
Confidence 45666666668888888755 233333 445 7778888 5777775 543 5666666 578899999999763
Q ss_pred CceeecCCccCCCHHHHHHHH
Q 046627 324 NQHYVASKEATFNYSSMADFL 344 (767)
Q Consensus 324 ~~kY~~~~~~~~t~e~L~~Fi 344 (767)
.....|. +..+.+.|.+|+
T Consensus 83 ~~~~~~~--g~~~~~~i~~~~ 101 (101)
T cd02961 83 KEPVKYE--GPRTLESLVEFI 101 (101)
T ss_pred cccccCC--CCcCHHHHHhhC
Confidence 3333343 356888887774
No 212
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.18 E-value=0.63 Score=40.87 Aligned_cols=75 Identities=8% Similarity=0.158 Sum_probs=46.4
Q ss_pred EEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCccc-chHHHhhcCCC
Q 046627 415 VVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLND-CSLILKSMTQR 493 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND-~~~~L~~~~~I 493 (767)
++.|..+||++|++..-.|.+. + . .+-.+|++.+. ....+. ..+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-----g-I---------------------------~~~~idi~~~~~~~~~~~-~~g~ 48 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-----G-F---------------------------DFEMINVDRVPEAAETLR-AQGF 48 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-----C-C---------------------------ceEEEECCCCHHHHHHHH-HcCC
Confidence 6678999999999988887552 1 1 22233444332 112222 2477
Q ss_pred CcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCC
Q 046627 494 EVYPALVLFPAERKNAISFKGDISVADVIKFIADHGN 530 (767)
Q Consensus 494 ~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~ 530 (767)
..+|++++ ++. . -++...+.|.+.+..+..
T Consensus 49 ~~vPvv~i---~~~---~-~~Gf~~~~l~~~~~~~~~ 78 (81)
T PRK10329 49 RQLPVVIA---GDL---S-WSGFRPDMINRLHPAPHA 78 (81)
T ss_pred CCcCEEEE---CCE---E-EecCCHHHHHHHHHhhhh
Confidence 89999965 222 1 235788888888877643
No 213
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.98 E-value=0.13 Score=43.41 Aligned_cols=21 Identities=38% Similarity=0.803 Sum_probs=18.3
Q ss_pred EEEEEcCcChhhHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVRE 435 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~lee 435 (767)
++.|..+||++|.+....|.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~ 23 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE 23 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 678999999999999877764
No 214
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=92.73 E-value=0.32 Score=43.87 Aligned_cols=89 Identities=10% Similarity=-0.014 Sum_probs=54.3
Q ss_pred hHHhhcCCccEEEEeecCC-cChhhh-cccCCchhhhhcCCceEEEE--eCC------hhhhhhhcCCCCCcEEEEEcC-
Q 046627 253 DQYYLGHDLTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRGSFFFN--DGN------YRLLGALTGGSTIPSLAIVDP- 321 (767)
Q Consensus 253 f~~~~~~~~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkgk~~fv--D~~------~~~l~~~~~~~~~P~l~I~d~- 321 (767)
+......+.++++.|+.+| .....+ ..+-...++++.+++++.|+ |.+ ..+++.| +...+|+++++++
T Consensus 4 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~-~i~~~Pti~~~~~~ 82 (104)
T cd02953 4 LAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRF-GVFGPPTYLFYGPG 82 (104)
T ss_pred HHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHc-CCCCCCEEEEECCC
Confidence 4455677888888888765 223222 11111134566677666664 532 3455555 5788999999997
Q ss_pred CCCceeecCCccCCCHHHHHHHH
Q 046627 322 ISNQHYVASKEATFNYSSMADFL 344 (767)
Q Consensus 322 ~~~~kY~~~~~~~~t~e~L~~Fi 344 (767)
+....+.+. +..+.+.|.++|
T Consensus 83 ~g~~~~~~~--G~~~~~~l~~~l 103 (104)
T cd02953 83 GEPEPLRLP--GFLTADEFLEAL 103 (104)
T ss_pred CCCCCcccc--cccCHHHHHHHh
Confidence 333344443 467888888876
No 215
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.70 E-value=0.29 Score=41.49 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.0
Q ss_pred EEEEEcCcChhhHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeL 436 (767)
++.|..+||++|++....|++.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~ 24 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK 24 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC
Confidence 6779999999999999888763
No 216
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=92.65 E-value=0.26 Score=45.46 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=53.9
Q ss_pred CCccEEEEeecCC-cChhhh-cccCCchhhhhcCCc-eEEE--EeCC--hhhhhhhcCCCCCcEEEEEcCCCCceeecCC
Q 046627 259 HDLTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRG-SFFF--NDGN--YRLLGALTGGSTIPSLAIVDPISNQHYVASK 331 (767)
Q Consensus 259 ~~~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkg-k~~f--vD~~--~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~~ 331 (767)
.+.|+++.|+++| .....+ ..+ .++++++++ ++.| +|.+ ..+.+.+ ++.++|++++++.+ +....+
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~---~~l~~~~~~~~v~~~~vd~d~~~~l~~~~-~V~~~Pt~~i~~~g-~~~~~~-- 95 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVW---KEVIQELEPLGVGIATVNAGHERRLARKL-GAHSVPAIVGIING-QVTFYH-- 95 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHH---HHHHHHHHhcCceEEEEeccccHHHHHHc-CCccCCEEEEEECC-EEEEEe--
Confidence 5788888888766 333333 444 677888875 3555 4653 5666666 67899999999733 222222
Q ss_pred ccCCCHHHHHHHHHH
Q 046627 332 EATFNYSSMADFLHG 346 (767)
Q Consensus 332 ~~~~t~e~L~~Fi~~ 346 (767)
.+..+.+.|.+||++
T Consensus 96 ~G~~~~~~l~~~i~~ 110 (111)
T cd02963 96 DSSFTKQHVVDFVRK 110 (111)
T ss_pred cCCCCHHHHHHHHhc
Confidence 246789999999975
No 217
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.34 Score=52.52 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=62.7
Q ss_pred hcCCccEEEEeecCC-cChhhh-cccCCchhhhhcCCceEEEE--e--CChhhhhhhcCCCCCcEEEEEcCCCCceee-c
Q 046627 257 LGHDLTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRGSFFFN--D--GNYRLLGALTGGSTIPSLAIVDPISNQHYV-A 329 (767)
Q Consensus 257 ~~~~~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkgk~~fv--D--~~~~~l~~~~~~~~~P~l~I~d~~~~~kY~-~ 329 (767)
.....|+.++|+.+| ..+.++ ..+ .+++.+|+|+|.++ | ....+...| ++..+|+++.|.- |+.-. |
T Consensus 40 ~S~~~PVlV~fWap~~~~c~qL~p~L---ekla~~~~G~f~LakvN~D~~p~vAaqf-giqsIPtV~af~d--GqpVdgF 113 (304)
T COG3118 40 SSREVPVLVDFWAPWCGPCKQLTPTL---EKLAAEYKGKFKLAKVNCDAEPMVAAQF-GVQSIPTVYAFKD--GQPVDGF 113 (304)
T ss_pred HccCCCeEEEecCCCCchHHHHHHHH---HHHHHHhCCceEEEEecCCcchhHHHHh-CcCcCCeEEEeeC--CcCcccc
Confidence 344569999999877 445555 666 78899999999996 3 347888888 6888999999983 33322 2
Q ss_pred CCccCCCHHHHHHHHHHHhcC
Q 046627 330 SKEATFNYSSMADFLHGFLNG 350 (767)
Q Consensus 330 ~~~~~~t~e~L~~Fi~~~l~G 350 (767)
+ +....+.|++|++.++.-
T Consensus 114 ~--G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 114 Q--GAQPESQLRQFLDKVLPA 132 (304)
T ss_pred C--CCCcHHHHHHHHHHhcCh
Confidence 2 245567999999998643
No 218
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=92.59 E-value=0.28 Score=44.51 Aligned_cols=79 Identities=15% Similarity=0.054 Sum_probs=52.8
Q ss_pred cCCccEEEEeecCCc-Chhhh-cccCCchhhhhcCCceEEE-EeCC---hhhhhhhcCCCCCcEEEEEcCCCCceeecCC
Q 046627 258 GHDLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFRGSFFF-NDGN---YRLLGALTGGSTIPSLAIVDPISNQHYVASK 331 (767)
Q Consensus 258 ~~~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fkgk~~f-vD~~---~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~~ 331 (767)
..+.++++.|+++|= ..... ..+ .++|++|++..++ +|.. ..+.+.| +..++||+++++.+ ....+.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l---~~la~~~~~~~~~~vd~~~~~~~l~~~~-~V~~~PT~~lf~~g--~~~~~~- 88 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHF---NALSSMFPQIRHLAIEESSIKPSLLSRY-GVVGFPTILLFNST--PRVRYN- 88 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHH---HHHHHHhccCceEEEECCCCCHHHHHhc-CCeecCEEEEEcCC--ceeEec-
Confidence 467888889998773 23333 444 6778888763222 4543 4556666 57889999999965 334443
Q ss_pred ccCCCHHHHHHHH
Q 046627 332 EATFNYSSMADFL 344 (767)
Q Consensus 332 ~~~~t~e~L~~Fi 344 (767)
+..+.+.|.+||
T Consensus 89 -G~~~~~~l~~f~ 100 (100)
T cd02999 89 -GTRTLDSLAAFY 100 (100)
T ss_pred -CCCCHHHHHhhC
Confidence 368999999885
No 219
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=92.50 E-value=0.48 Score=42.91 Aligned_cols=88 Identities=13% Similarity=0.048 Sum_probs=58.4
Q ss_pred echHHhhcCCccEEEEeecCC-cChhhh-cccCCchhhhhcCCce-EEE--EeCC-hhhhhhhcCCCCCcEEEEEcCCCC
Q 046627 251 ASDQYYLGHDLTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRGS-FFF--NDGN-YRLLGALTGGSTIPSLAIVDPISN 324 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkgk-~~f--vD~~-~~~l~~~~~~~~~P~l~I~d~~~~ 324 (767)
+.|..+...+.|+++.|+++| ...... ..+ .+++..++++ +.| +|.+ ..+++.| ++..+|+++++..+ +
T Consensus 8 ~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l---~~~~~~~~~~~~~~~~vd~d~~~~~~~~-~v~~~Pt~~~~~~g-~ 82 (102)
T cd02948 8 EEWEELLSNKGLTVVDVYQEWCGPCKAVVSLF---KKIKNELGDDLLHFATAEADTIDTLKRY-RGKCEPTFLFYKNG-E 82 (102)
T ss_pred HHHHHHHccCCeEEEEEECCcCHhHHHHhHHH---HHHHHHcCCCcEEEEEEeCCCHHHHHHc-CCCcCcEEEEEECC-E
Confidence 456667778889999999877 334443 455 6778888753 444 4554 5666666 57899999999833 2
Q ss_pred ceeecCCccCCCHHHHHHHHHH
Q 046627 325 QHYVASKEATFNYSSMADFLHG 346 (767)
Q Consensus 325 ~kY~~~~~~~~t~e~L~~Fi~~ 346 (767)
...... +.+.+.|.++|+.
T Consensus 83 ~~~~~~---G~~~~~~~~~i~~ 101 (102)
T cd02948 83 LVAVIR---GANAPLLNKTITE 101 (102)
T ss_pred EEEEEe---cCChHHHHHHHhh
Confidence 223322 3578888888865
No 220
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=92.42 E-value=0.65 Score=44.29 Aligned_cols=68 Identities=21% Similarity=0.364 Sum_probs=54.4
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhh
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKS 489 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~ 489 (767)
..+.|+|-|--.|-+.|..|...+.++++...+. .+|+.+|.+. .+ .+.+
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---------------------------a~Iylvdide--V~-~~~~ 71 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---------------------------AVIYLVDIDE--VP-DFVK 71 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---------------------------eEEEEEecch--hh-hhhh
Confidence 4889999999999999999999999999988753 3778888763 22 2345
Q ss_pred cCCCCcccEEEEEeCCCe
Q 046627 490 MTQREVYPALVLFPAERK 507 (767)
Q Consensus 490 ~~~I~gyPTi~Lf~aggK 507 (767)
.|++...||++||-++..
T Consensus 72 ~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 72 MYELYDPPTVMFFFNNKH 89 (142)
T ss_pred hhcccCCceEEEEEcCce
Confidence 689999999998855543
No 221
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=92.29 E-value=0.7 Score=40.44 Aligned_cols=84 Identities=11% Similarity=0.095 Sum_probs=54.1
Q ss_pred hcCCccEEEEeecCCcC-hhhh-cccCCchhhhhcCCceEEE--EeCC--hhhhhhhcCCCCCcEEEEEcCCCCceeecC
Q 046627 257 LGHDLTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRGSFFF--NDGN--YRLLGALTGGSTIPSLAIVDPISNQHYVAS 330 (767)
Q Consensus 257 ~~~~~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkgk~~f--vD~~--~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~ 330 (767)
.+.+.++++.|+.++-. .... +.+ +++++.+.+++.| +|.+ ..+.+.| +...+|+++++..+ +..+.+.
T Consensus 11 ~~~~~~vvi~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~~~~~~~~-~v~~~P~~~~~~~g-~~~~~~~ 85 (101)
T TIGR01068 11 ASSDKPVLVDFWAPWCGPCKMIAPIL---EELAKEYEGKVKFVKLNVDENPDIAAKY-GIRSIPTLLLFKNG-KEVDRSV 85 (101)
T ss_pred hhcCCcEEEEEECCCCHHHHHhCHHH---HHHHHHhcCCeEEEEEECCCCHHHHHHc-CCCcCCEEEEEeCC-cEeeeec
Confidence 34456888888875532 2333 445 7778888876655 4654 5666777 56789999999633 3223332
Q ss_pred CccCCCHHHHHHHHHHH
Q 046627 331 KEATFNYSSMADFLHGF 347 (767)
Q Consensus 331 ~~~~~t~e~L~~Fi~~~ 347 (767)
+..+.+.|.+|+++.
T Consensus 86 --g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 86 --GALPKAALKQLINKN 100 (101)
T ss_pred --CCCCHHHHHHHHHhh
Confidence 246788999998763
No 222
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=92.08 E-value=0.2 Score=42.30 Aligned_cols=22 Identities=18% Similarity=0.601 Sum_probs=18.8
Q ss_pred EEEEEcCcChhhHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeL 436 (767)
++.|..+||++|.+....|++.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~ 23 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK 23 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC
Confidence 5679999999999998888763
No 223
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=92.00 E-value=0.19 Score=43.23 Aligned_cols=22 Identities=18% Similarity=0.754 Sum_probs=18.7
Q ss_pred EEEEEcCcChhhHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeL 436 (767)
++.|+.+||++|.+....+++.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~ 22 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK 22 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc
Confidence 3578899999999999888764
No 224
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=91.88 E-value=0.56 Score=41.68 Aligned_cols=86 Identities=7% Similarity=-0.014 Sum_probs=55.6
Q ss_pred chHHhhcCCccEEEEeecCCc-Chhhh-cccCCchhhhhcCC--ceEEEE--eCC----hhhhhhhcCCCCCcEEEEEcC
Q 046627 252 SDQYYLGHDLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFR--GSFFFN--DGN----YRLLGALTGGSTIPSLAIVDP 321 (767)
Q Consensus 252 tf~~~~~~~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fk--gk~~fv--D~~----~~~l~~~~~~~~~P~l~I~d~ 321 (767)
++......+.++++.|+++|- ....+ ..+ +++++.++ +.+.|+ |.+ ..+...| +..++|+++++..
T Consensus 9 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~-~i~~~Pt~~~~~~ 84 (104)
T cd02997 9 DFRKFLKKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEEY-NVKGFPTFKYFEN 84 (104)
T ss_pred hHHHHHhhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHhC-CCccccEEEEEeC
Confidence 455556667788888987663 33333 445 67777776 666664 543 3555555 5788999999984
Q ss_pred CCCceeecCCccCCCHHHHHHHH
Q 046627 322 ISNQHYVASKEATFNYSSMADFL 344 (767)
Q Consensus 322 ~~~~kY~~~~~~~~t~e~L~~Fi 344 (767)
+ ...+.+. +..+.+.|.+|+
T Consensus 85 g-~~~~~~~--g~~~~~~l~~~l 104 (104)
T cd02997 85 G-KFVEKYE--GERTAEDIIEFM 104 (104)
T ss_pred C-CeeEEeC--CCCCHHHHHhhC
Confidence 3 3344554 357888888774
No 225
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=91.86 E-value=0.55 Score=54.34 Aligned_cols=91 Identities=9% Similarity=-0.022 Sum_probs=62.7
Q ss_pred echHHhhc---CCccEEEEeecCCcC-hhhh-cccCCchhhhhcCCce-E--EEEeCC--h-hhh-hhhcCCCCCcEEEE
Q 046627 251 ASDQYYLG---HDLTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRGS-F--FFNDGN--Y-RLL-GALTGGSTIPSLAI 318 (767)
Q Consensus 251 etf~~~~~---~~~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkgk-~--~fvD~~--~-~~l-~~~~~~~~~P~l~I 318 (767)
.+|+.+.. .+.++++.|+.+|=. ...+ ..+ .++|++|+++ + ..+|.+ . .+. +.| +...+|++++
T Consensus 359 ~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~---eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~-~I~~~PTii~ 434 (463)
T TIGR00424 359 PGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASY---LELAEKLAGSGVKVAKFRADGDQKEFAKQEL-QLGSFPTILF 434 (463)
T ss_pred HHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhccCCcEEEEEECCCCccHHHHHHc-CCCccceEEE
Confidence 66777654 788999999987733 3334 445 7889999864 4 445654 2 343 345 5779999999
Q ss_pred EcCCCCceeecCCccCCCHHHHHHHHHH
Q 046627 319 VDPISNQHYVASKEATFNYSSMADFLHG 346 (767)
Q Consensus 319 ~d~~~~~kY~~~~~~~~t~e~L~~Fi~~ 346 (767)
|..+......|+. +.++.++|..||+.
T Consensus 435 Fk~g~~~~~~Y~~-g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 435 FPKHSSRPIKYPS-EKRDVDSLMSFVNL 461 (463)
T ss_pred EECCCCCceeCCC-CCCCHHHHHHHHHh
Confidence 9976543444542 36999999999976
No 226
>PLN02309 5'-adenylylsulfate reductase
Probab=91.79 E-value=0.51 Score=54.56 Aligned_cols=92 Identities=10% Similarity=0.034 Sum_probs=63.5
Q ss_pred echHHhh---cCCccEEEEeecCCc-Chhhh-cccCCchhhhhcCCce-EEEE--eCC---hhhhh-hhcCCCCCcEEEE
Q 046627 251 ASDQYYL---GHDLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFRGS-FFFN--DGN---YRLLG-ALTGGSTIPSLAI 318 (767)
Q Consensus 251 etf~~~~---~~~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fkgk-~~fv--D~~---~~~l~-~~~~~~~~P~l~I 318 (767)
++|..+. +.+.++++.|+.+|= ....+ ..+ .++|++|+++ +.|+ |++ ..+.. .| +..++|++++
T Consensus 353 ~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~---e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~-~I~~~PTil~ 428 (457)
T PLN02309 353 AGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASY---EELAEKLAGSGVKVAKFRADGDQKEFAKQEL-QLGSFPTILL 428 (457)
T ss_pred HHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhccCCeEEEEEECCCcchHHHHhhC-CCceeeEEEE
Confidence 5666554 688899999998773 33334 444 7778888765 7664 554 34444 35 5789999999
Q ss_pred EcCCCCceeecCCccCCCHHHHHHHHHHH
Q 046627 319 VDPISNQHYVASKEATFNYSSMADFLHGF 347 (767)
Q Consensus 319 ~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~ 347 (767)
|..+....-.|.. +.++.++|.+||+..
T Consensus 429 f~~g~~~~v~Y~~-~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 429 FPKNSSRPIKYPS-EKRDVDSLLSFVNSL 456 (457)
T ss_pred EeCCCCCeeecCC-CCcCHHHHHHHHHHh
Confidence 9876544444542 368999999999864
No 227
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=91.73 E-value=0.53 Score=49.44 Aligned_cols=92 Identities=12% Similarity=0.057 Sum_probs=63.1
Q ss_pred echHHhhc-----CCccEEEEeecCCcC-hhhh-cccCCchhhhhcCCceEEEE--eCC--hhhhhhhcCCCCCcEEEEE
Q 046627 251 ASDQYYLG-----HDLTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRGSFFFN--DGN--YRLLGALTGGSTIPSLAIV 319 (767)
Q Consensus 251 etf~~~~~-----~~~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkgk~~fv--D~~--~~~l~~~~~~~~~P~l~I~ 319 (767)
.+|+.... .+.++.+.|+++|=. .... ..+ .++|+++++.+.|. |.+ ..+.+.| +..++|+++++
T Consensus 38 ~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~---e~la~~~~~~v~~~~VD~~~~~~l~~~~-~I~~~PTl~~f 113 (224)
T PTZ00443 38 KNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAW---ERLAKALKGQVNVADLDATRALNLAKRF-AIKGYPTLLLF 113 (224)
T ss_pred HHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHH---HHHHHHcCCCeEEEEecCcccHHHHHHc-CCCcCCEEEEE
Confidence 55665543 357888888887732 3333 445 77799999888774 543 5666666 57899999999
Q ss_pred cCCCCceeecCCccCCCHHHHHHHHHHHhc
Q 046627 320 DPISNQHYVASKEATFNYSSMADFLHGFLN 349 (767)
Q Consensus 320 d~~~~~kY~~~~~~~~t~e~L~~Fi~~~l~ 349 (767)
+. +..+.+. .+..+.+.|.+|+.....
T Consensus 114 ~~--G~~v~~~-~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 114 DK--GKMYQYE-GGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EC--CEEEEee-CCCCCHHHHHHHHHHHHH
Confidence 94 3334332 246899999999988763
No 228
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=91.37 E-value=0.81 Score=40.84 Aligned_cols=86 Identities=8% Similarity=-0.067 Sum_probs=53.0
Q ss_pred echHHhhcCCccEEEEeecCC-cChhhh-cccCCchhhhhcCCc-eEEE--EeCC--hhhhhhhcCCCCCcEEEEEcCCC
Q 046627 251 ASDQYYLGHDLTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRG-SFFF--NDGN--YRLLGALTGGSTIPSLAIVDPIS 323 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkg-k~~f--vD~~--~~~l~~~~~~~~~P~l~I~d~~~ 323 (767)
++|+.+... . .++.|+++| ...... ..+ .++|+.+++ .+.| +|.+ ..+.+.| +..++|+++++..
T Consensus 9 ~~f~~~~~~-~-~lv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~v~~~~vd~~~~~~~~~~~-~i~~~Pt~~~~~~-- 80 (101)
T cd02994 9 SNWTLVLEG-E-WMIEFYAPWCPACQQLQPEW---EEFADWSDDLGINVAKVDVTQEPGLSGRF-FVTALPTIYHAKD-- 80 (101)
T ss_pred hhHHHHhCC-C-EEEEEECCCCHHHHHHhHHH---HHHHHhhccCCeEEEEEEccCCHhHHHHc-CCcccCEEEEeCC--
Confidence 556666543 3 456677666 223333 334 666776664 4655 4653 5566666 5789999999853
Q ss_pred CceeecCCccCCCHHHHHHHHHH
Q 046627 324 NQHYVASKEATFNYSSMADFLHG 346 (767)
Q Consensus 324 ~~kY~~~~~~~~t~e~L~~Fi~~ 346 (767)
+....+. +..+.+.|.+|+++
T Consensus 81 g~~~~~~--G~~~~~~l~~~i~~ 101 (101)
T cd02994 81 GVFRRYQ--GPRDKEDLISFIEE 101 (101)
T ss_pred CCEEEec--CCCCHHHHHHHHhC
Confidence 3334443 46899999999863
No 229
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=91.29 E-value=0.53 Score=42.76 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=18.3
Q ss_pred CCcEEEEEE----cCcChhhHHHHHHHHHH
Q 046627 411 NEDVVVLFS----SSWCGFCQRMELVVREV 436 (767)
Q Consensus 411 ~K~VLV~Fy----ApWCg~Ck~~~P~leeL 436 (767)
.+.|+|+-. +|||++|++....|.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~ 40 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC 40 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc
Confidence 344555433 39999999998888764
No 230
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=91.16 E-value=0.78 Score=47.06 Aligned_cols=108 Identities=15% Similarity=0.226 Sum_probs=77.3
Q ss_pred CceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhh
Q 046627 382 DSIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGE 461 (767)
Q Consensus 382 ~~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~ 461 (767)
++|..+++..|..-| ... ..+-.|+|..|...-+.|.-+...++.+|.+|..-
T Consensus 91 G~V~~ISg~dyv~EV-T~A--------s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~i------------------ 143 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEV-TKA--------SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQI------------------ 143 (240)
T ss_pred cceeeccchHHHHHH-Hhc--------cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcc------------------
Confidence 468999999999988 221 13778999999999999999999999999999752
Q ss_pred HHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCe--e---EEEEeC-CCCHHHHHHHHHHhCCCC
Q 046627 462 YLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERK--N---AISFKG-DISVADVIKFIADHGNNS 532 (767)
Q Consensus 462 ~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK--~---~i~y~G-~~t~e~L~~FI~k~~~~~ 532 (767)
+|+.+..-+|-.| |--...||+++|..|.- . +..+-| ..+.+++..|+-+.+..-
T Consensus 144 -------KFVki~at~cIpN---------YPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qaga~l 204 (240)
T KOG3170|consen 144 -------KFVKIPATTCIPN---------YPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAGAAL 204 (240)
T ss_pred -------eEEecccccccCC---------CcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhccccc
Confidence 2334444455444 44467899999977652 1 222333 337899999988766433
No 231
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=91.01 E-value=0.37 Score=48.49 Aligned_cols=28 Identities=21% Similarity=0.474 Sum_probs=23.1
Q ss_pred EEEcCcChhhHHHHHHHHHHHHHHccCc
Q 046627 417 LFSSSWCGFCQRMELVVREVFRAVKGYM 444 (767)
Q Consensus 417 ~FyApWCg~Ck~~~P~leeLak~fk~~~ 444 (767)
.|..|+|+.|-.+.|.|.++...|+.+.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i 29 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKI 29 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcE
Confidence 5899999999999999999999998765
No 232
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=90.93 E-value=1.7 Score=42.95 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=79.9
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCc-eeeeccccCC--cc----cchhhHH-hhccccCcEEEEecCCccc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYM-KSLKNGYKNG--QR----DLNGEYL-KNINFKLPRIYLMDCTLND 482 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~-~iI~V~~d~~--~~----~~~~~~v-~~~~~~~~vIa~ID~t~ND 482 (767)
+|.+||.=.|+-||+--+. ..++.|+++|+++. .++++-|++- ++ .+....+ .+.++.||.+.++|+.-.+
T Consensus 25 GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG~~ 103 (162)
T COG0386 25 GKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNGKN 103 (162)
T ss_pred CcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeecCCC
Confidence 8999999999999997643 46788999998764 6777777652 11 1222222 3567789999999985432
Q ss_pred chH---HHhhcC-------CCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhC
Q 046627 483 CSL---ILKSMT-------QREVYPALVLFPAERKNAISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 483 ~~~---~L~~~~-------~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~ 529 (767)
... -|+... .|..==|=+|++++|+.+.+|.-..+.+++...|++..
T Consensus 104 a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL 160 (162)
T COG0386 104 AHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLL 160 (162)
T ss_pred CCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHh
Confidence 222 222221 12222245677889998899988888999988887754
No 233
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=90.86 E-value=1.4 Score=42.63 Aligned_cols=97 Identities=10% Similarity=0.134 Sum_probs=62.8
Q ss_pred cccce--echHHhhcCCccEEEEeecCC-----cChhhhcccCCchhhhhcCC-ceEEE--EeC--ChhhhhhhcCCCCC
Q 046627 246 QLIPE--ASDQYYLGHDLTTAKDVKVGE-----KSSSQISMSGDPQLEFQGFR-GSFFF--NDG--NYRLLGALTGGSTI 313 (767)
Q Consensus 246 ~lPlV--etf~~~~~~~~p~~~~f~~~~-----e~s~~~e~l~~~~~~A~~fk-gk~~f--vD~--~~~~l~~~~~~~~~ 313 (767)
..|.| .+...+.... +.+++|+... |..+..-.| .++|++|. +++.| +|. +..++..| ++.++
T Consensus 18 g~~~~~~~~~~~~~~~~-~~~vl~~~gdp~r~~E~~D~avvl---eELa~e~~~~~v~~akVDiD~~~~LA~~f-gV~si 92 (132)
T PRK11509 18 GWTPVSESRLDDWLTQA-PDGVVLLSSDPKRTPEVSDNPVMI---GELLREFPDYTWQVAIADLEQSEAIGDRF-GVFRF 92 (132)
T ss_pred CCCccccccHHHHHhCC-CcEEEEeCCCCCcCCccccHHHHH---HHHHHHhcCCceEEEEEECCCCHHHHHHc-CCccC
Confidence 45666 4455666444 4566666522 222222344 77799998 45666 454 46777777 67899
Q ss_pred cEEEEEcCCCCceeecCCccCCCHHHHHHHHHHHhcC
Q 046627 314 PSLAIVDPISNQHYVASKEATFNYSSMADFLHGFLNG 350 (767)
Q Consensus 314 P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~l~G 350 (767)
|++++|..+ +++-.-.+..+.+.+.++|++++..
T Consensus 93 PTLl~FkdG---k~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 93 PATLVFTGG---NYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred CEEEEEECC---EEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 999999944 3433223467899999999999875
No 234
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=90.83 E-value=0.28 Score=48.18 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=31.7
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCcee
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKS 446 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~i 446 (767)
.+..|+.|+.+.|+||+++.+.+.++.++++++..+
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~ 50 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKF 50 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceE
Confidence 788999999999999999999999998888665543
No 235
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=90.83 E-value=0.56 Score=39.76 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=17.3
Q ss_pred EEEEcCcChhhHHHHHHHHH
Q 046627 416 VLFSSSWCGFCQRMELVVRE 435 (767)
Q Consensus 416 V~FyApWCg~Ck~~~P~lee 435 (767)
..|..+||++|++....|++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~ 21 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE 21 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 56889999999999988875
No 236
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=90.59 E-value=11 Score=41.86 Aligned_cols=194 Identities=11% Similarity=0.081 Sum_probs=105.3
Q ss_pred echHHhhcCCccEEEEeecCCc-Chhh---h---cccCCchhhhhcC---Cc-eEEEEeCC--hhhhhhhcCCCCCcEEE
Q 046627 251 ASDQYYLGHDLTTAKDVKVGEK-SSSQ---I---SMSGDPQLEFQGF---RG-SFFFNDGN--YRLLGALTGGSTIPSLA 317 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~e-~s~~---~---e~l~~~~~~A~~f---kg-k~~fvD~~--~~~l~~~~~~~~~P~l~ 317 (767)
.||.+.+..-.-+.++|+.+.+ +... + +.+ -++|.+. +| .|..||.. .++++.+ +....+++.
T Consensus 42 KNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~---LELaAQVlE~~gigfg~VD~~Kd~klAKKL-gv~E~~Siy 117 (383)
T PF01216_consen 42 KNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELV---LELAAQVLEDKGIGFGMVDSKKDAKLAKKL-GVEEEGSIY 117 (383)
T ss_dssp TTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHH---HHHHHHHCGGCTEEEEEEETTTTHHHHHHH-T--STTEEE
T ss_pred hHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHH---HHHHHHhccccCcceEEeccHHHHHHHHhc-CccccCcEE
Confidence 6777766666556656665332 2222 1 222 3344322 33 14446874 7888888 456699999
Q ss_pred EEcCCCCceeecCCccCCCHHHHHHHHHHHhcCCcCCCcccccccccccCCCCCCccccCccccCceeeeccccccccc-
Q 046627 318 IVDPISNQHYVASKEATFNYSSMADFLHGFLNGTLLPYQRSESILQISREATHPPFVNMDFHEVDSIPRVTVHSFSDLV- 396 (767)
Q Consensus 318 I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~l~Gkl~p~~kSe~~p~~~~~~~~p~fvn~df~~~~~V~~Lt~~nF~e~V- 396 (767)
+|. .+....|. +.++++.|..||.+.+.- | |..++.+.=-+..
T Consensus 118 Vfk--d~~~IEyd--G~~saDtLVeFl~dl~ed-----------P---------------------VeiIn~~~e~~~Fe 161 (383)
T PF01216_consen 118 VFK--DGEVIEYD--GERSADTLVEFLLDLLED-----------P---------------------VEIINNKHELKAFE 161 (383)
T ss_dssp EEE--TTEEEEE---S--SHHHHHHHHHHHHSS-----------S---------------------EEEE-SHHHHHHHH
T ss_pred EEE--CCcEEEec--CccCHHHHHHHHHHhccc-----------c---------------------hhhhcChhhhhhhh
Confidence 988 34445554 589999999999998642 1 4455443321111
Q ss_pred ccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEe
Q 046627 397 GLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLM 476 (767)
Q Consensus 397 ~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~I 476 (767)
..+ ....||=|+-+--+. --..|+++|+.|.....|+ |.+
T Consensus 162 ~ie-----------d~~klIGyFk~~~s~---~yk~FeeAAe~F~p~IkFf--------------------------Atf 201 (383)
T PF01216_consen 162 RIE-----------DDIKLIGYFKSEDSE---HYKEFEEAAEHFQPYIKFF--------------------------ATF 201 (383)
T ss_dssp H-------------SS-EEEEE-SSTTSH---HHHHHHHHHHHCTTTSEEE--------------------------EE-
T ss_pred hcc-----------cceeEEEEeCCCCcH---HHHHHHHHHHhhcCceeEE--------------------------EEe
Confidence 111 456688777664332 2345788999998776543 332
Q ss_pred cCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeC-CCCHHHHHHHHHHhCCCC
Q 046627 477 DCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKG-DISVADVIKFIADHGNNS 532 (767)
Q Consensus 477 D~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G-~~t~e~L~~FI~k~~~~~ 532 (767)
|- .++++.+.+ .=.+-||..=-..|+..+| +.+.++|++||++|-...
T Consensus 202 d~-------~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rpt 250 (383)
T PF01216_consen 202 DK-------KVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPT 250 (383)
T ss_dssp SH-------HHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-S
T ss_pred cc-------hhhhhcCcc-ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhH
Confidence 21 223344554 5567777555556888887 457899999999986544
No 237
>PRK10638 glutaredoxin 3; Provisional
Probab=90.45 E-value=0.33 Score=42.38 Aligned_cols=22 Identities=23% Similarity=0.676 Sum_probs=18.6
Q ss_pred EEEEEcCcChhhHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeL 436 (767)
++.|..+||++|++....+++.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~ 25 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK 25 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 5678889999999999888764
No 238
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=89.82 E-value=0.47 Score=42.33 Aligned_cols=27 Identities=19% Similarity=0.539 Sum_probs=18.8
Q ss_pred CCcEEEEEEc----CcChhhHHHHHHHHHHH
Q 046627 411 NEDVVVLFSS----SWCGFCQRMELVVREVF 437 (767)
Q Consensus 411 ~K~VLV~FyA----pWCg~Ck~~~P~leeLa 437 (767)
+++|+|+-.. |||++|++....|++..
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~ 37 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG 37 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC
Confidence 4455554332 79999999998887763
No 239
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=89.73 E-value=0.98 Score=42.39 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=50.8
Q ss_pred echHHhhcCCccEEEEeecCCc---Chhhh-cccCCchhhhhcCCceEEE--EeC--ChhhhhhhcCCCCCcEEEEEcCC
Q 046627 251 ASDQYYLGHDLTTAKDVKVGEK---SSSQI-SMSGDPQLEFQGFRGSFFF--NDG--NYRLLGALTGGSTIPSLAIVDPI 322 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~e---~s~~~-e~l~~~~~~A~~fkgk~~f--vD~--~~~~l~~~~~~~~~P~l~I~d~~ 322 (767)
.+|+.+...+-+.+++|+..+. +...+ ..| .++|++|.+++.| +|. +..++..| ++..+||+++|..+
T Consensus 18 ~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~l---eela~e~~~~v~f~kVdid~~~~la~~f-~V~sIPTli~fkdG 93 (111)
T cd02965 18 ATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVL---PELLKAFPGRFRAAVVGRADEQALAARF-GVLRTPALLFFRDG 93 (111)
T ss_pred ccHHHHHhCCCCEEEEecCCcccCcchhhhHhHH---HHHHHHCCCcEEEEEEECCCCHHHHHHc-CCCcCCEEEEEECC
Confidence 6777777888999999988753 33334 455 8889999998766 354 46777777 67899999999843
No 240
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=89.68 E-value=1.5 Score=40.81 Aligned_cols=89 Identities=8% Similarity=-0.021 Sum_probs=59.1
Q ss_pred echHHhhcCCccEEEEeecCCc-Chhhh-cccCCchhhhhcCCceEEE--EeCC--hhhhhhhcCCCCCcEEEEEcCCCC
Q 046627 251 ASDQYYLGHDLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFRGSFFF--NDGN--YRLLGALTGGSTIPSLAIVDPISN 324 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fkgk~~f--vD~~--~~~l~~~~~~~~~P~l~I~d~~~~ 324 (767)
+.|......+.++++.|+.++- ....+ ..+ .+++++|.+ +.| +|.+ ..+++.| +...+|+++++..+..
T Consensus 13 ~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l---~~la~~~~~-i~f~~Vd~~~~~~l~~~~-~v~~vPt~l~fk~G~~ 87 (113)
T cd02989 13 KEFFEIVKSSERVVCHFYHPEFFRCKIMDKHL---EILAKKHLE-TKFIKVNAEKAPFLVEKL-NIKVLPTVILFKNGKT 87 (113)
T ss_pred HHHHHHHhCCCcEEEEEECCCCccHHHHHHHH---HHHHHHcCC-CEEEEEEcccCHHHHHHC-CCccCCEEEEEECCEE
Confidence 3455556667788888887663 44444 566 777888876 444 5764 5677777 5788999999995532
Q ss_pred c-ee----ecCCccCCCHHHHHHHH
Q 046627 325 Q-HY----VASKEATFNYSSMADFL 344 (767)
Q Consensus 325 ~-kY----~~~~~~~~t~e~L~~Fi 344 (767)
. ++ .+.....++.++|+.|+
T Consensus 88 v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 88 VDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEEECccccCCCCCCCHHHHHHHh
Confidence 1 22 12222478889998886
No 241
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=89.47 E-value=0.68 Score=44.61 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=34.4
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHH--ccCceeeeccc
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAV--KGYMKSLKNGY 451 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~f--k~~~~iI~V~~ 451 (767)
..+.+|+.|+..-|+||.++.+.+.++-+.+ +++..++-..+
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 3788999999999999999999999999998 66666555544
No 242
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=89.24 E-value=1.2 Score=39.74 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=53.0
Q ss_pred HhhcCCccEEEEeecCCcC-hhhh-cccCCchhhhhcCCceEEEE--eCC--hhhhhhhcCCCCCcEEEEEcCCCCceee
Q 046627 255 YYLGHDLTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRGSFFFN--DGN--YRLLGALTGGSTIPSLAIVDPISNQHYV 328 (767)
Q Consensus 255 ~~~~~~~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkgk~~fv--D~~--~~~l~~~~~~~~~P~l~I~d~~~~~kY~ 328 (767)
.+...+.+++++|++++-. .... ..+ .++++++.+++.|. |.+ ..+.+.+ +..++|++++++. ++....
T Consensus 8 ~~~~~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~v~~~~id~d~~~~l~~~~-~v~~vPt~~i~~~-g~~v~~ 82 (97)
T cd02949 8 LYHESDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFDGAVHFVEIDIDEDQEIAEAA-GIMGTPTVQFFKD-KELVKE 82 (97)
T ss_pred HHHhCCCeEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCCCHHHHHHC-CCeeccEEEEEEC-CeEEEE
Confidence 3455677778788765532 2223 445 77788888777664 543 5666666 5688999999974 333333
Q ss_pred cCCccCCCHHHHHHHH
Q 046627 329 ASKEATFNYSSMADFL 344 (767)
Q Consensus 329 ~~~~~~~t~e~L~~Fi 344 (767)
+. +..+.+.|.+|+
T Consensus 83 ~~--g~~~~~~~~~~l 96 (97)
T cd02949 83 IS--GVKMKSEYREFI 96 (97)
T ss_pred Ee--CCccHHHHHHhh
Confidence 32 356777777776
No 243
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=89.23 E-value=1.1 Score=43.97 Aligned_cols=88 Identities=8% Similarity=-0.061 Sum_probs=56.2
Q ss_pred CCcEEEEEEcCcChhhHHH-HHHHHHHHHHHccC-c-eeeeccccCCcccchhhHHhhccc--cCcEEEEecCCcccchH
Q 046627 411 NEDVVVLFSSSWCGFCQRM-ELVVREVFRAVKGY-M-KSLKNGYKNGQRDLNGEYLKNINF--KLPRIYLMDCTLNDCSL 485 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~-~P~leeLak~fk~~-~-~iI~V~~d~~~~~~~~~~v~~~~~--~~~vIa~ID~t~ND~~~ 485 (767)
+..||+.|.+.||+.|... .+.|.+.++.|... . .+++|+.|.... .....+++++ +++.+..-+ .
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~--~~~~~~~~~~~~~f~lLsD~~-------~ 100 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFV--MKAWGKALGAKDKIRFLADGN-------G 100 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHH--HHHHHHhhCCCCcEEEEECCC-------H
Confidence 3455555558999999999 99999999999754 3 488888776542 2344555555 566654432 2
Q ss_pred HHhhcCCCC------c-----ccEEEEEeCCCee
Q 046627 486 ILKSMTQRE------V-----YPALVLFPAERKN 508 (767)
Q Consensus 486 ~L~~~~~I~------g-----yPTi~Lf~aggK~ 508 (767)
.++..|++. + ..++++++ +|+.
T Consensus 101 ~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I 133 (155)
T cd03013 101 EFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKV 133 (155)
T ss_pred HHHHHcCCCccccccCCcceeeeEEEEEC-CCEE
Confidence 344556652 1 35567776 4554
No 244
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=89.20 E-value=1.6 Score=40.68 Aligned_cols=94 Identities=7% Similarity=-0.041 Sum_probs=56.2
Q ss_pred HhhcCC-ccEEEEeecCCcC-hhhh-cccCCchhhhhcCCceEEE--EeCC---------------hhhhhhhcCCCCCc
Q 046627 255 YYLGHD-LTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRGSFFF--NDGN---------------YRLLGALTGGSTIP 314 (767)
Q Consensus 255 ~~~~~~-~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkgk~~f--vD~~---------------~~~l~~~~~~~~~P 314 (767)
.....+ .|+++.|+++|=. .... ..+.....+.+.+++.+.| +|.+ ..+...| +...+|
T Consensus 8 ~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~-~v~~~P 86 (125)
T cd02951 8 EAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY-RVRFTP 86 (125)
T ss_pred HHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc-CCcccc
Confidence 344566 8888888876622 2222 2221112344455555555 3432 2344445 578899
Q ss_pred EEEEEcCC-CCceeecCCccCCCHHHHHHHHHHHhcCC
Q 046627 315 SLAIVDPI-SNQHYVASKEATFNYSSMADFLHGFLNGT 351 (767)
Q Consensus 315 ~l~I~d~~-~~~kY~~~~~~~~t~e~L~~Fi~~~l~Gk 351 (767)
++++++++ .+....+. +..+.+.+.++++.++++.
T Consensus 87 t~~~~~~~gg~~~~~~~--G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 87 TVIFLDPEGGKEIARLP--GYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred EEEEEcCCCCceeEEec--CCCCHHHHHHHHHHHHhhh
Confidence 99999986 33333333 3578899999999988764
No 245
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=88.38 E-value=1 Score=42.02 Aligned_cols=94 Identities=20% Similarity=0.281 Sum_probs=58.0
Q ss_pred ceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhh---HHHHHHHHHHHHHHccCceeeeccccCCcccch
Q 046627 383 SIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFC---QRMELVVREVFRAVKGYMKSLKNGYKNGQRDLN 459 (767)
Q Consensus 383 ~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~C---k~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~ 459 (767)
..+.++.++++.++. . ... .|.|++.-|.-| ....=++-||.+.|.+...
T Consensus 10 g~~~vd~~~ld~~l~-~-----------~~~-~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~-------------- 62 (107)
T PF07449_consen 10 GWPRVDADTLDAFLA-A-----------PGD-AVLFFAGDPARFPETADVAVILPELVKAFPGRFR-------------- 62 (107)
T ss_dssp TEEEE-CCCHHHHHH-C-----------CSC-EEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEE--------------
T ss_pred CCeeechhhHHHHHh-C-----------CCc-EEEEECCCCCcCcccccceeEcHHHHHhhhCccc--------------
Confidence 367899999999993 1 334 555666555444 4444477788888876532
Q ss_pred hhHHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHH
Q 046627 460 GEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDISVAD 520 (767)
Q Consensus 460 ~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~ 520 (767)
.+-++ -+....|..+|++..+|+++||. +|+..-...|-++-.+
T Consensus 63 -------------~avv~---~~~e~~L~~r~gv~~~PaLvf~R-~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 63 -------------GAVVA---RAAERALAARFGVRRWPALVFFR-DGRYLGAIEGIRDWAD 106 (107)
T ss_dssp -------------EEEEE---HHHHHHHHHHHT-TSSSEEEEEE-TTEEEEEEESSSTHHH
T ss_pred -------------eEEEC---chhHHHHHHHhCCccCCeEEEEE-CCEEEEEecCeecccc
Confidence 22222 12234577789999999999994 5555555667666543
No 246
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=88.32 E-value=2.1 Score=38.65 Aligned_cols=88 Identities=8% Similarity=0.040 Sum_probs=54.9
Q ss_pred echHHhhcCCccEEEEeecCCc-Chhhh-cccCCchhhhhcCCc---eEEEE--eCC--hhhhhhhcCCCCCcEEEEEcC
Q 046627 251 ASDQYYLGHDLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFRG---SFFFN--DGN--YRLLGALTGGSTIPSLAIVDP 321 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fkg---k~~fv--D~~--~~~l~~~~~~~~~P~l~I~d~ 321 (767)
+.|..+. ...++.+.|+.+|= ..... ..+ .+++..+++ .+.+. |.+ ..+.+.| +..++|++++++.
T Consensus 7 ~~~~~~~-~~~~vlv~f~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~-~I~~~Pt~~l~~~ 81 (104)
T cd03000 7 DSFKDVR-KEDIWLVDFYAPWCGHCKKLEPVW---NEVGAELKSSGSPVRVGKLDATAYSSIASEF-GVRGYPTIKLLKG 81 (104)
T ss_pred hhhhhhc-cCCeEEEEEECCCCHHHHhhChHH---HHHHHHHHhcCCcEEEEEEECccCHhHHhhc-CCccccEEEEEcC
Confidence 4455543 34577777777652 22222 334 666777743 35553 553 4555656 5788999999973
Q ss_pred CCCceeecCCccCCCHHHHHHHHHHH
Q 046627 322 ISNQHYVASKEATFNYSSMADFLHGF 347 (767)
Q Consensus 322 ~~~~kY~~~~~~~~t~e~L~~Fi~~~ 347 (767)
+..+.+. +..+.+.|.+|+++.
T Consensus 82 --~~~~~~~--G~~~~~~l~~~~~~~ 103 (104)
T cd03000 82 --DLAYNYR--GPRTKDDIVEFANRV 103 (104)
T ss_pred --CCceeec--CCCCHHHHHHHHHhh
Confidence 3345554 368999999999874
No 247
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=88.08 E-value=6.1 Score=41.87 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=82.5
Q ss_pred ceeeecccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCc-------
Q 046627 383 SIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQ------- 455 (767)
Q Consensus 383 ~V~~Lt~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~------- 455 (767)
.|..+++.+...+..+-. .+++.+|+|-+=.||+=..-.+.++++++.|.+...++.|-+...=
T Consensus 83 ~vv~l~g~~~~~ildf~~---------g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~ 153 (237)
T PF00837_consen 83 PVVTLDGQRSCRILDFAK---------GNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAF 153 (237)
T ss_pred ceEeeCCCcceeHHHhcc---------CCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccC
Confidence 378899988666552222 4899999999999999999999999999999987666655443210
Q ss_pred ---------c------cchhhHHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEEEeCCC----
Q 046627 456 ---------R------DLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAISFKGDI---- 516 (767)
Q Consensus 456 ---------~------~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~---- 516 (767)
- -.....+.++....++ .+|.-.|.... .|+ .+|.=+++-.+|| +.|.|.+
T Consensus 154 ~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi--~vD~mdN~~~~----~Yg--A~PeRlyIi~~gk--v~Y~Gg~GP~~ 223 (237)
T PF00837_consen 154 GNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPI--VVDTMDNNFNK----AYG--ALPERLYIIQDGK--VVYKGGPGPFG 223 (237)
T ss_pred CCCceeecCCCCHHHHHHHHHHHHhhCCCCCE--EEEccCCHHHH----HhC--CCcceEEEEECCE--EEEeCCCCCCc
Confidence 0 0111133344444443 35665554433 354 6787555545665 5677643
Q ss_pred -CHHHHHHHHHHh
Q 046627 517 -SVADVIKFIADH 528 (767)
Q Consensus 517 -t~e~L~~FI~k~ 528 (767)
..+++.+||++.
T Consensus 224 y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 224 YSPEELREWLEKY 236 (237)
T ss_pred CCHHHHHHHHHhc
Confidence 688999999873
No 248
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=87.89 E-value=1.9 Score=39.75 Aligned_cols=96 Identities=20% Similarity=0.328 Sum_probs=68.3
Q ss_pred cccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhcccc
Q 046627 390 HSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFK 469 (767)
Q Consensus 390 ~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~ 469 (767)
+.|..++. -.+.|||.|..+--.. -.....+.++|+..++..
T Consensus 10 KdfKKLLR------------Tr~NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG~g------------------------- 51 (112)
T cd03067 10 KDFKKLLR------------TRNNVLVLYSKSAKSA-EALLKLLSDVAQAVKGQG------------------------- 51 (112)
T ss_pred HHHHHHHh------------hcCcEEEEEecchhhH-HHHHHHHHHHHHHhcCce-------------------------
Confidence 56777772 2678899888764333 344558899999998864
Q ss_pred CcEEEEecCCcccchHHHhhcCCCC----cccEEE-EEeCCCeeEEEEeCCCCHHHHHHHHHH
Q 046627 470 LPRIYLMDCTLNDCSLILKSMTQRE----VYPALV-LFPAERKNAISFKGDISVADVIKFIAD 527 (767)
Q Consensus 470 ~~vIa~ID~t~ND~~~~L~~~~~I~----gyPTi~-Lf~aggK~~i~y~G~~t~e~L~~FI~k 527 (767)
.++.|||...+-. -||+++.|. --|..+ -| ++|..--.|.-..+...|+.|++.
T Consensus 52 --T~~~vdCgd~e~k-KLCKKlKv~~~~kp~~~~LkHY-KdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 52 --TIAWIDCGDSESR-KLCKKLKVDPSSKPKPVELKHY-KDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred --eEEEEecCChHHH-HHHHHHccCCCCCCCcchhhcc-cCCCccccccchhhHHHHHHHhhC
Confidence 6788999865544 478888877 445443 45 566555678888999999999864
No 249
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=87.71 E-value=2.3 Score=39.15 Aligned_cols=79 Identities=13% Similarity=0.092 Sum_probs=51.4
Q ss_pred ccEEEEeecCC-cChhhh-cccCCchhhhhcCCc-eEEEEeCCh-hhhhhhcCCCCCcEEEEEcCCCC-ceee----cCC
Q 046627 261 LTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRG-SFFFNDGNY-RLLGALTGGSTIPSLAIVDPISN-QHYV----ASK 331 (767)
Q Consensus 261 ~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkg-k~~fvD~~~-~~l~~~~~~~~~P~l~I~d~~~~-~kY~----~~~ 331 (767)
.++++.|++++ .....+ ..+ .++|++|.+ +|.-+|++. .+.+.| +...+|+++++..+.. .++. +..
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l---~~la~~~~~v~f~~vd~~~~~l~~~~-~i~~~Pt~~~f~~G~~v~~~~G~~~~~~ 100 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHL---EELAAKYPETKFVKINAEKAFLVNYL-DIKVLPTLLVYKNGELIDNIVGFEELGG 100 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHH---HHHHHHCCCcEEEEEEchhhHHHHhc-CCCcCCEEEEEECCEEEEEEecHHHhCC
Confidence 78888898866 344445 666 788988876 233357654 555666 6788999999985432 1221 111
Q ss_pred ccCCCHHHHHHHH
Q 046627 332 EATFNYSSMADFL 344 (767)
Q Consensus 332 ~~~~t~e~L~~Fi 344 (767)
..++.+.|++|+
T Consensus 101 -~~~~~~~l~~~l 112 (113)
T cd02957 101 -DDFTTEDLEKFL 112 (113)
T ss_pred -CCCCHHHHHHHh
Confidence 467777877775
No 250
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=87.68 E-value=1.7 Score=38.15 Aligned_cols=84 Identities=10% Similarity=-0.033 Sum_probs=50.5
Q ss_pred hHHhhcCC--ccEEEEeecCCcC-hhhh-cccCCchhhhhcCCceEEEE--eCC--hhhhhhhcCCCCCcEEEEEcCCCC
Q 046627 253 DQYYLGHD--LTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRGSFFFN--DGN--YRLLGALTGGSTIPSLAIVDPISN 324 (767)
Q Consensus 253 f~~~~~~~--~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkgk~~fv--D~~--~~~l~~~~~~~~~P~l~I~d~~~~ 324 (767)
|....... .++++.|+.++-. ...+ ..| .++++++.+.+.|+ |.+ ..+.+.| +..++|++++++.+.
T Consensus 5 ~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l---~~l~~~~~~~i~~~~vd~~~~~~~~~~~-~i~~~Pt~~~~~~g~- 79 (97)
T cd02984 5 FEELLKSDASKLLVLHFWAPWAEPCKQMNQVF---EELAKEAFPSVLFLSIEAEELPEISEKF-EITAVPTFVFFRNGT- 79 (97)
T ss_pred HHHHHhhCCCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhCCceEEEEEccccCHHHHHhc-CCccccEEEEEECCE-
Confidence 44444444 7888888876633 3333 455 67777765566664 654 4566667 578899999998432
Q ss_pred ceeecCCccCCCHHHHHHHH
Q 046627 325 QHYVASKEATFNYSSMADFL 344 (767)
Q Consensus 325 ~kY~~~~~~~~t~e~L~~Fi 344 (767)
.-..+. +.+.+.|.+.|
T Consensus 80 ~~~~~~---g~~~~~l~~~~ 96 (97)
T cd02984 80 IVDRVS---GADPKELAKKV 96 (97)
T ss_pred EEEEEe---CCCHHHHHHhh
Confidence 222222 35666666654
No 251
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=87.25 E-value=1.7 Score=40.31 Aligned_cols=21 Identities=38% Similarity=0.857 Sum_probs=17.4
Q ss_pred EEEEEcCcChhhHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVRE 435 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~lee 435 (767)
+|.|.-+||++|+++.-.|..
T Consensus 16 VVifSKs~C~~c~~~k~ll~~ 36 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD 36 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh
Confidence 666999999999997766665
No 252
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=87.15 E-value=0.23 Score=53.89 Aligned_cols=90 Identities=18% Similarity=0.282 Sum_probs=65.0
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
.-+|=+.||+.||++.+..+|.++-....|..-. .+. + ++.. .. + .....
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~-h~~--v--------ee~~--------~l----------p-sv~s~ 125 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQ-HFA--V--------EESQ--------AL----------P-SVFSS 125 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccccc-ccc--H--------HHHh--------hc----------c-cchhc
Confidence 5678899999999999999999988888776211 000 0 1111 00 1 12346
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCCCC
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHGNNS 532 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~~~ 532 (767)
+++.+.|++.+.. .+-+..|.|.++...|+.|..+...-.
T Consensus 126 ~~~~~~ps~~~~n--~t~~~~~~~~r~l~sLv~fy~~i~~~~ 165 (319)
T KOG2640|consen 126 YGIHSEPSNLMLN--QTCPASYRGERDLASLVNFYTEITPMS 165 (319)
T ss_pred cccccCCcceeec--cccchhhcccccHHHHHHHHHhhccch
Confidence 8999999999983 456788999999999999999877533
No 253
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=87.02 E-value=3 Score=49.46 Aligned_cols=94 Identities=13% Similarity=0.154 Sum_probs=63.5
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
+...|+.|+.+-|..|..+...+++++. +.++. .+...|...+ ..+...
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i---------------------------~~~~~~~~~~---~~~~~~ 414 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKL---------------------------NSEAVNRGEE---PESETL 414 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcE---------------------------EEEEeccccc---hhhHhh
Confidence 4557888999999999999999998874 33332 2333343322 234557
Q ss_pred CCCCcccEEEEEeCCCe-eEEEEeCCCCHHHHHHHHHHh---CCCCCcc
Q 046627 491 TQREVYPALVLFPAERK-NAISFKGDISVADVIKFIADH---GNNSHDL 535 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK-~~i~y~G~~t~e~L~~FI~k~---~~~~~~l 535 (767)
|++...|++.++..+++ .-++|.|-..=.++..||... ++....|
T Consensus 415 ~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~l 463 (555)
T TIGR03143 415 PKITKLPTVALLDDDGNYTGLKFHGVPSGHELNSFILALYNAAGPGQPL 463 (555)
T ss_pred cCCCcCCEEEEEeCCCcccceEEEecCccHhHHHHHHHHHHhcCCCCCC
Confidence 89999999999965554 358898877766666666654 4444444
No 254
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=86.56 E-value=1.1 Score=39.32 Aligned_cols=22 Identities=18% Similarity=0.641 Sum_probs=18.3
Q ss_pred EEEEEcCcChhhHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeL 436 (767)
++.|.-+||++|++....|.+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~ 24 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK 24 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc
Confidence 6678899999999988887743
No 255
>PHA02278 thioredoxin-like protein
Probab=86.51 E-value=2.6 Score=38.71 Aligned_cols=85 Identities=5% Similarity=-0.113 Sum_probs=51.7
Q ss_pred chHHhhcCCccEEEEeecCCcC-hhhh-cccCCchhhhhcCCc--eEEEEeCC------hhhhhhhcCCCCCcEEEEEcC
Q 046627 252 SDQYYLGHDLTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRG--SFFFNDGN------YRLLGALTGGSTIPSLAIVDP 321 (767)
Q Consensus 252 tf~~~~~~~~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkg--k~~fvD~~------~~~l~~~~~~~~~P~l~I~d~ 321 (767)
.|..+...+.++++.|+++|=. ...+ ..+ .++|+++.+ .|.++|.+ ..+.+.| ...++|++++|..
T Consensus 6 ~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l---~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~-~I~~iPT~i~fk~ 81 (103)
T PHA02278 6 DLNTAIRQKKDVIVMITQDNCGKCEILKSVI---PMFQESGDIKKPILTLNLDAEDVDREKAVKLF-DIMSTPVLIGYKD 81 (103)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhHHHHH---HHHHhhhcCCceEEEEECCccccccHHHHHHC-CCccccEEEEEEC
Confidence 4566667888999999987732 2223 333 556665433 46667654 3566666 6789999999995
Q ss_pred CCCceeecCCccCCCHHHHHHH
Q 046627 322 ISNQHYVASKEATFNYSSMADF 343 (767)
Q Consensus 322 ~~~~kY~~~~~~~~t~e~L~~F 343 (767)
+... -.+ .+..+.+.|.++
T Consensus 82 G~~v-~~~--~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQLV-KKY--EDQVTPMQLQEL 100 (103)
T ss_pred CEEE-EEE--eCCCCHHHHHhh
Confidence 4221 112 124566666543
No 256
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=86.50 E-value=2.9 Score=38.81 Aligned_cols=86 Identities=5% Similarity=-0.081 Sum_probs=55.0
Q ss_pred hcCCccEEEEeecCC-cChhhh-cccCCchhhhhcCCceE--EEEeCC--hhhhhhhcCCCCCcEEEEEcCCCC-ceeec
Q 046627 257 LGHDLTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRGSF--FFNDGN--YRLLGALTGGSTIPSLAIVDPISN-QHYVA 329 (767)
Q Consensus 257 ~~~~~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkgk~--~fvD~~--~~~l~~~~~~~~~P~l~I~d~~~~-~kY~~ 329 (767)
+..+.+++++|+.+| .....+ ..+ .+++..+ +++ ..+|.+ ..+.+.| +...+|+++|++.+.. ....+
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l---~~la~~~-~~i~~~~vd~d~~~~l~~~~-~v~~vPt~~i~~~g~~~~~~~~ 93 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLL---EELSELS-DKLKLEIYDFDEDKEKAEKY-GVERVPTTIFLQDGGKDGGIRY 93 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHH---HHHHHhc-CceEEEEEeCCcCHHHHHHc-CCCcCCEEEEEeCCeecceEEE
Confidence 356777777777666 455545 555 6667766 444 445654 5666666 6788999999985321 22223
Q ss_pred CCccCCCHHHHHHHHHHHhc
Q 046627 330 SKEATFNYSSMADFLHGFLN 349 (767)
Q Consensus 330 ~~~~~~t~e~L~~Fi~~~l~ 349 (767)
. +..+.+.+.+||..+++
T Consensus 94 ~--G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 94 Y--GLPAGYEFASLIEDIVR 111 (113)
T ss_pred E--ecCchHHHHHHHHHHHh
Confidence 2 24567899999998765
No 257
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=86.45 E-value=2.5 Score=38.36 Aligned_cols=78 Identities=8% Similarity=-0.015 Sum_probs=49.0
Q ss_pred CccEEEEeecCCc-Chhhh-cccCCchhhhhcCCceEEE--EeCC-----hhhhhhhcCCCCCcEEEEEcCCCCceeecC
Q 046627 260 DLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFRGSFFF--NDGN-----YRLLGALTGGSTIPSLAIVDPISNQHYVAS 330 (767)
Q Consensus 260 ~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fkgk~~f--vD~~-----~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~ 330 (767)
+.++++.|+++|= ..... ..+ .++|++| ..+.| +|.+ ..+++.| ++.++|+++++..+ +....+.
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l---~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~-~V~~~Pt~~~~~~G-~~v~~~~ 88 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTM---VKLSRTC-NDVVFLLVNGDENDSTMELCRRE-KIIEVPHFLFYKDG-EKIHEEE 88 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHH---HHHHHHC-CCCEEEEEECCCChHHHHHHHHc-CCCcCCEEEEEeCC-eEEEEEe
Confidence 7888888998773 33333 555 7778888 44544 4654 2455666 67899999999633 2233332
Q ss_pred CccCCCHHHHHHHHHH
Q 046627 331 KEATFNYSSMADFLHG 346 (767)
Q Consensus 331 ~~~~~t~e~L~~Fi~~ 346 (767)
+...+.|.+-+..
T Consensus 89 ---G~~~~~l~~~~~~ 101 (103)
T cd02985 89 ---GIGPDELIGDVLY 101 (103)
T ss_pred ---CCCHHHHHHHHHh
Confidence 3566777766654
No 258
>PRK10824 glutaredoxin-4; Provisional
Probab=85.98 E-value=1 Score=42.56 Aligned_cols=16 Identities=19% Similarity=0.440 Sum_probs=13.9
Q ss_pred CcChhhHHHHHHHHHH
Q 046627 421 SWCGFCQRMELVVREV 436 (767)
Q Consensus 421 pWCg~Ck~~~P~leeL 436 (767)
|||++|++....|.++
T Consensus 28 p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 28 PSCGFSAQAVQALSAC 43 (115)
T ss_pred CCCchHHHHHHHHHHc
Confidence 6999999998888765
No 259
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=85.95 E-value=1.6 Score=41.13 Aligned_cols=60 Identities=5% Similarity=-0.148 Sum_probs=44.4
Q ss_pred CCccEEEEeecCCc-Chhhh-cccCCchhhhhcCCceEEE--EeCC--hhhhhhhcCCCCCcEEEEEcCC
Q 046627 259 HDLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFRGSFFF--NDGN--YRLLGALTGGSTIPSLAIVDPI 322 (767)
Q Consensus 259 ~~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fkgk~~f--vD~~--~~~l~~~~~~~~~P~l~I~d~~ 322 (767)
.+.++++.|+++|= ....+ ..| .++|.+|.+.+.| +|.+ ..+.+.| +...+|+++++..+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~l---e~la~~~~~~v~f~kVDvD~~~~la~~~-~V~~iPTf~~fk~G 78 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVL---AKIAEDVSNFAVIYLVDIDEVPDFNKMY-ELYDPPTVMFFFRN 78 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHH---HHHHHHccCceEEEEEECCCCHHHHHHc-CCCCCCEEEEEECC
Confidence 57788888998884 34444 556 7889999987655 5654 6777777 67889999999943
No 260
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=85.38 E-value=3.2 Score=34.94 Aligned_cols=85 Identities=12% Similarity=0.021 Sum_probs=52.0
Q ss_pred chHHhhcCCccEEEEeecCC-cChhhh-cccCCchhhhhcCCceEEE--EeCC--hhhhhhhcCCCCCcEEEEEcCCCCc
Q 046627 252 SDQYYLGHDLTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRGSFFF--NDGN--YRLLGALTGGSTIPSLAIVDPISNQ 325 (767)
Q Consensus 252 tf~~~~~~~~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkgk~~f--vD~~--~~~l~~~~~~~~~P~l~I~d~~~~~ 325 (767)
+|........+++++|+.++ ...... +.+ +++++. .+.+.| +|.+ ..+...| +..++|++++++.+. .
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~---~~~~~~-~~~~~~~~i~~~~~~~~~~~~-~v~~~P~~~~~~~g~-~ 75 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVL---EELAEE-YPKVKFVKVDVDENPELAEEY-GVRSIPTFLFFKNGK-E 75 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHH---HHHHHH-CCCceEEEEECCCChhHHHhc-CcccccEEEEEECCE-E
Confidence 45566666688888887654 223333 444 666666 444545 4654 5566666 567899999998543 2
Q ss_pred eeecCCccCCCHHHHHHHH
Q 046627 326 HYVASKEATFNYSSMADFL 344 (767)
Q Consensus 326 kY~~~~~~~~t~e~L~~Fi 344 (767)
...+.+ ..+.+.|.+||
T Consensus 76 ~~~~~g--~~~~~~l~~~i 92 (93)
T cd02947 76 VDRVVG--ADPKEELEEFL 92 (93)
T ss_pred EEEEec--CCCHHHHHHHh
Confidence 333332 45678888876
No 261
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=84.48 E-value=6 Score=36.85 Aligned_cols=85 Identities=12% Similarity=0.119 Sum_probs=53.3
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcc-cchHHHh
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLN-DCSLILK 488 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~N-D~~~~L~ 488 (767)
.+++++|+=.++.|+-.......|++.+....+.. .++.+|.-.+ ++...++
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~---------------------------~~y~l~v~~~R~vSn~IA 70 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEI---------------------------PVYYLDVIEYRPVSNAIA 70 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------------------------------EEEEEGGGGHHHHHHHH
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccc---------------------------eEEEEEEEeCchhHHHHH
Confidence 48899998999999999999988888887776532 5566676544 5556677
Q ss_pred hcCCCC-cccEEEEEeCCCeeEEEEeCCCCHHHH
Q 046627 489 SMTQRE-VYPALVLFPAERKNAISFKGDISVADV 521 (767)
Q Consensus 489 ~~~~I~-gyPTi~Lf~aggK~~i~y~G~~t~e~L 521 (767)
..|+|. .-|-++++..|....-.-....+.+.|
T Consensus 71 e~~~V~HeSPQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 71 EDFGVKHESPQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp HHHT----SSEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred HHhCCCcCCCcEEEEECCEEEEECccccCCHHhc
Confidence 788986 789999996543323333456666655
No 262
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=83.89 E-value=4.5 Score=35.66 Aligned_cols=85 Identities=13% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHhhcCCccEEEEeecCCcChhhhcccCCchhhhhcCCceEEEEeCC-hhhhhhhcCCCCCcEEEEEcCCCCceeecCCc
Q 046627 254 QYYLGHDLTTAKDVKVGEKSSSQISMSGDPQLEFQGFRGSFFFNDGN-YRLLGALTGGSTIPSLAIVDPISNQHYVASKE 332 (767)
Q Consensus 254 ~~~~~~~~p~~~~f~~~~e~s~~~e~l~~~~~~A~~fkgk~~fvD~~-~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~~~ 332 (767)
+.+.....+.++-|+.. .+.+.++.+ +++|..+|..+.|.... ..++..+. ..-|+++++.+..+.+-.|++
T Consensus 11 ~~~~~~~~~~vvg~f~~-~~~~~~~~f---~~~A~~~r~~~~F~~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~~y~g- 83 (97)
T cd02981 11 EKFLDKDDVVVVGFFKD-EESEEYKTF---EKVAESLRDDYGFGHTSDKEVAKKLK--VKPGSVVLFKPFEEEPVEYDG- 83 (97)
T ss_pred HHHhccCCeEEEEEECC-CCcHHHHHH---HHHHHhcccCCeEEEEChHHHHHHcC--CCCCceEEeCCcccCCccCCC-
Confidence 34455566666666643 333445555 89999999888887543 45555442 345889999865443333543
Q ss_pred cCCCHHHHHHHHHH
Q 046627 333 ATFNYSSMADFLHG 346 (767)
Q Consensus 333 ~~~t~e~L~~Fi~~ 346 (767)
.++.+.|.+||..
T Consensus 84 -~~~~~~l~~fi~~ 96 (97)
T cd02981 84 -EFTEESLVEFIKD 96 (97)
T ss_pred -CCCHHHHHHHHHh
Confidence 5678999999864
No 263
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=83.53 E-value=3.4 Score=36.09 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=52.7
Q ss_pred EEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhcCCCC
Q 046627 415 VVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSMTQRE 494 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~ 494 (767)
|+.|..+.|.-|......++++..... ..+-.+|++.++ .+..+|+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-----------------------------~~l~~vDI~~d~---~l~~~Y~~- 48 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-----------------------------FELEEVDIDEDP---ELFEKYGY- 48 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-----------------------------CEEEEEETTTTH---HHHHHSCT-
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-----------------------------ceEEEEECCCCH---HHHHHhcC-
Confidence 788999999999999988877543332 156677777554 25567884
Q ss_pred cccEEEEEeCCC-eeEEEEeCCCCHHHHHHHHH
Q 046627 495 VYPALVLFPAER-KNAISFKGDISVADVIKFIA 526 (767)
Q Consensus 495 gyPTi~Lf~agg-K~~i~y~G~~t~e~L~~FI~ 526 (767)
.+|.+.+=...+ +......+..+.+.|.+||+
T Consensus 49 ~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 49 RIPVLHIDGIRQFKEQEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp STSEEEETT-GGGCTSEEEESSB-HHHHHHHHH
T ss_pred CCCEEEEcCcccccccceeCCCCCHHHHHHHhC
Confidence 789866642111 11345567889999999985
No 264
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=82.25 E-value=6.8 Score=37.86 Aligned_cols=71 Identities=23% Similarity=0.399 Sum_probs=49.9
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhh
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKS 489 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~ 489 (767)
.++.|+|-|--.|-+.|.+|-..+.+++++.+... +|+.+|.+. ++. +.+
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a---------------------------~IY~vDi~~--Vpd-fn~ 68 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFA---------------------------VIYLVDIDE--VPD-FNQ 68 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTE---------------------------EEEEEETTT--THC-CHH
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcce---------------------------EEEEEEccc--chh-hhc
Confidence 38999999999999999999999999999887642 788888874 222 344
Q ss_pred cCCCCcccEEE-EEeCCCeeEEE
Q 046627 490 MTQREVYPALV-LFPAERKNAIS 511 (767)
Q Consensus 490 ~~~I~gyPTi~-Lf~aggK~~i~ 511 (767)
.|.+. -|..+ ||=+++...+.
T Consensus 69 ~yel~-dP~tvmFF~rnkhm~vD 90 (133)
T PF02966_consen 69 MYELY-DPCTVMFFFRNKHMMVD 90 (133)
T ss_dssp HTTS--SSEEEEEEETTEEEEEE
T ss_pred ccccC-CCeEEEEEecCeEEEEE
Confidence 68888 67654 44344333333
No 265
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=82.09 E-value=9.2 Score=34.68 Aligned_cols=81 Identities=9% Similarity=0.139 Sum_probs=51.7
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
+..++|-|+..--+ .+...|.++|+.+++...| +.. .+ ..+...
T Consensus 19 ~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F---------------------------~~~---~~---~~~~~~ 62 (102)
T cd03066 19 DDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKF---------------------------FAT---FD---SKVAKK 62 (102)
T ss_pred CCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEE---------------------------EEE---Cc---HHHHHH
Confidence 45666666655333 3556788999999765433 110 00 012223
Q ss_pred CCCCcccEEEEEeCCCeeEEEE-eCCCCHHHHHHHHHHh
Q 046627 491 TQREVYPALVLFPAERKNAISF-KGDISVADVIKFIADH 528 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y-~G~~t~e~L~~FI~k~ 528 (767)
+++ ..|+++||+........| .|..+.+.|.+||..+
T Consensus 63 ~~~-~~~~i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 63 LGL-KMNEVDFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred cCC-CCCcEEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 454 479999997644445678 7788999999999875
No 266
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=81.36 E-value=6.7 Score=37.08 Aligned_cols=90 Identities=6% Similarity=-0.022 Sum_probs=55.6
Q ss_pred echHHhhcCCccEEEEeecCC-cChhhh-cccCCchhhhhcCCceEEEEeCC--h-----------hhhhhhc---CCCC
Q 046627 251 ASDQYYLGHDLTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRGSFFFNDGN--Y-----------RLLGALT---GGST 312 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkgk~~fvD~~--~-----------~~l~~~~---~~~~ 312 (767)
+.+......+....+.|..+| .....+ ..| .+++++.+..|+++|.+ . .+.+.|. +..+
T Consensus 14 ~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l---~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 90 (122)
T TIGR01295 14 VRALEALDKKETATFFIGRKTCPYCRKFSGTL---SGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMG 90 (122)
T ss_pred HHHHHHHHcCCcEEEEEECCCChhHHHHhHHH---HHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCC
Confidence 345556666777666666655 444444 556 77788877789998653 1 2223332 3456
Q ss_pred CcEEEEEcCCCCceeecCCccCCCHHHHHHHHH
Q 046627 313 IPSLAIVDPISNQHYVASKEATFNYSSMADFLH 345 (767)
Q Consensus 313 ~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~ 345 (767)
.|+++++..+..... +. ....+.+.|.+|+.
T Consensus 91 ~PT~v~~k~Gk~v~~-~~-G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 91 TPTFVHITDGKQVSV-RC-GSSTTAQELQDIAA 121 (122)
T ss_pred CCEEEEEeCCeEEEE-Ee-CCCCCHHHHHHHhh
Confidence 999999995543222 21 12567999999875
No 267
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=81.26 E-value=4.7 Score=37.44 Aligned_cols=78 Identities=10% Similarity=0.058 Sum_probs=52.4
Q ss_pred CccEEEEeecCCc-Chhhh-cccCCchhhhhcCCceEEE--EeCC--hhhhhhhcCCCCCcEEEEEcCCCC-ceeecCCc
Q 046627 260 DLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFRGSFFF--NDGN--YRLLGALTGGSTIPSLAIVDPISN-QHYVASKE 332 (767)
Q Consensus 260 ~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fkgk~~f--vD~~--~~~l~~~~~~~~~P~l~I~d~~~~-~kY~~~~~ 332 (767)
+.++++.|+++|= ....+ ..+ .++|.+|.+ +.| +|.+ ..+++.+ .+...|+++++..+.+ .+++
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~---~~La~~y~~-v~Flkvdvde~~~~~~~~-~V~~~PTf~f~k~g~~~~~~v---- 91 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKF---EKLAEKYPD-VVFLKVDVDELEEVAKEF-NVKAMPTFVFYKGGEEVDEVV---- 91 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHH---HHHHHHCCC-CEEEEEecccCHhHHHhc-CceEeeEEEEEECCEEEEEEe----
Confidence 4777788888773 33334 555 888999999 666 4766 5556666 5678999999985543 2333
Q ss_pred cCCCHHHHHHHHHHH
Q 046627 333 ATFNYSSMADFLHGF 347 (767)
Q Consensus 333 ~~~t~e~L~~Fi~~~ 347 (767)
..+.+.|.+.+..+
T Consensus 92 -Ga~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 92 -GANKAELEKKIAKH 105 (106)
T ss_pred -cCCHHHHHHHHHhc
Confidence 34666777776653
No 268
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=80.66 E-value=12 Score=34.18 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=51.4
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
.+.++|-|+..--. .+...|.++|+.+++...| +.... . .+...
T Consensus 18 ~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F---------------------------~~~~~--~----~~~~~ 61 (104)
T cd03069 18 DDASVVGFFEDEDS---KLLSEFLKAADTLRESFRF---------------------------AHTSD--K----QLLEK 61 (104)
T ss_pred CCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEE---------------------------EEECh--H----HHHHh
Confidence 66677777765333 4567888899998765433 11110 1 12335
Q ss_pred CCCCcccEEEEEeCC------CeeEEEEeCCCCHHHHHHHHHHh
Q 046627 491 TQREVYPALVLFPAE------RKNAISFKGDISVADVIKFIADH 528 (767)
Q Consensus 491 ~~I~gyPTi~Lf~ag------gK~~i~y~G~~t~e~L~~FI~k~ 528 (767)
+++ .|++++|.+. ......|.|..+.++|.+||..+
T Consensus 62 ~~~--~~~ivl~~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 62 YGY--GEGVVLFRPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred cCC--CCceEEEechhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 676 6888888432 12345699999999999999876
No 269
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=80.57 E-value=1.6 Score=44.96 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=30.3
Q ss_pred CCcEEEEEEcCcChhhHHHHHHH---HHHHHHHccCceee
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVV---REVFRAVKGYMKSL 447 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~l---eeLak~fk~~~~iI 447 (767)
+++.+|.|+.--|+||.++.+.+ +.+.+.+.+...++
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~ 76 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMT 76 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEE
Confidence 56779999999999999999876 78888887665443
No 270
>PTZ00051 thioredoxin; Provisional
Probab=79.97 E-value=5.4 Score=35.11 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=45.0
Q ss_pred echHHhhcCCccEEEEeecCCcC-hhhh-cccCCchhhhhcCCce-EEEEeCC--hhhhhhhcCCCCCcEEEEEcC
Q 046627 251 ASDQYYLGHDLTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRGS-FFFNDGN--YRLLGALTGGSTIPSLAIVDP 321 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkgk-~~fvD~~--~~~l~~~~~~~~~P~l~I~d~ 321 (767)
+.+..+.+.+.++++.|+.++-. ...+ ..+ .++++.+.+. +.-+|.+ ..+.+.| +..++|+++++..
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~vd~~~~~~~~~~~-~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIAPFY---EECSKEYTKMVFVKVDVDELSEVAEKE-NITSMPTFKVFKN 80 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHhHHH---HHHHHHcCCcEEEEEECcchHHHHHHC-CCceeeEEEEEeC
Confidence 45566777888888889876633 3333 555 6777777752 2334654 5667777 5788999999973
No 271
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=76.46 E-value=12 Score=34.29 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=54.1
Q ss_pred hcCCccEEEEeecCCc-Chhhh--cccCCchhhhhcCCceEEEE--eCC----hhhhhhhcCCCCCcEEEEEcC-CCCce
Q 046627 257 LGHDLTTAKDVKVGEK-SSSQI--SMSGDPQLEFQGFRGSFFFN--DGN----YRLLGALTGGSTIPSLAIVDP-ISNQH 326 (767)
Q Consensus 257 ~~~~~p~~~~f~~~~e-~s~~~--e~l~~~~~~A~~fkgk~~fv--D~~----~~~l~~~~~~~~~P~l~I~d~-~~~~k 326 (767)
...+++++++|...+- ....+ +-+. -.++.+.++..++++ |.+ ..++..| ...++|+++++++ +...-
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~-~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~-~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWS-NESVKEFIRENFIFWQCDIDSSEGQRFLQSY-KVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcC-CHHHHHHHHhCEEEEEecCCCccHHHHHHHh-CccCCCeEEEEeCccCcEe
Confidence 3456788877776553 33333 2232 234555565566664 543 3455555 5778999999998 44444
Q ss_pred eecCCccCCCHHHHHHHHHHHhc
Q 046627 327 YVASKEATFNYSSMADFLHGFLN 349 (767)
Q Consensus 327 Y~~~~~~~~t~e~L~~Fi~~~l~ 349 (767)
+.+.+ ..+.+.+..-++++..
T Consensus 92 ~~~~G--~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 92 KVWSG--NITPEDLLSQLIEFLE 112 (114)
T ss_pred EEEcC--CCCHHHHHHHHHHHHh
Confidence 45543 6788888887777654
No 272
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=76.23 E-value=2.6 Score=48.15 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.1
Q ss_pred EEEEEcCcChhhHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeL 436 (767)
++.|..|||++|++....+.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~ 25 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN 25 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 6779999999999998887764
No 273
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=74.99 E-value=11 Score=38.06 Aligned_cols=82 Identities=11% Similarity=0.125 Sum_probs=54.0
Q ss_pred ccEEEEeecCC-cChhhh-cccCCchhhhhcCCceEEE--EeCCh-hhhhhhcCCCCCcEEEEEcCCCCc-eeec-C--C
Q 046627 261 LTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRGSFFF--NDGNY-RLLGALTGGSTIPSLAIVDPISNQ-HYVA-S--K 331 (767)
Q Consensus 261 ~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkgk~~f--vD~~~-~~l~~~~~~~~~P~l~I~d~~~~~-kY~~-~--~ 331 (767)
.++++.|+.+| .....+ ..| .++|.+|.. +.| +|++. .+...| .+..+|+++++..+... .+.- . .
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l---~~LA~~~~~-vkF~kVd~d~~~l~~~f-~v~~vPTlllyk~G~~v~~~vG~~~~~ 158 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSL---LCLAAEYPA-VKFCKIRASATGASDEF-DTDALPALLVYKGGELIGNFVRVTEDL 158 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHH---HHHHHHCCC-eEEEEEeccchhhHHhC-CCCCCCEEEEEECCEEEEEEechHHhc
Confidence 47888888766 344444 556 788998864 556 46543 455555 57789999999854322 2221 1 1
Q ss_pred ccCCCHHHHHHHHHHH
Q 046627 332 EATFNYSSMADFLHGF 347 (767)
Q Consensus 332 ~~~~t~e~L~~Fi~~~ 347 (767)
...++.+.|+.|+..+
T Consensus 159 g~~f~~~~le~~L~~~ 174 (175)
T cd02987 159 GEDFDAEDLESFLVEY 174 (175)
T ss_pred CCCCCHHHHHHHHHhc
Confidence 2389999999998763
No 274
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=74.31 E-value=21 Score=34.27 Aligned_cols=92 Identities=8% Similarity=0.027 Sum_probs=53.2
Q ss_pred echHHhhcCCccEEEEeecCCcChhh-hcccCCchhhh-hcC--CceEEEE-----e-C---Chhhhhhhc-CCCCCcEE
Q 046627 251 ASDQYYLGHDLTTAKDVKVGEKSSSQ-ISMSGDPQLEF-QGF--RGSFFFN-----D-G---NYRLLGALT-GGSTIPSL 316 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~e~s~~-~e~l~~~~~~A-~~f--kgk~~fv-----D-~---~~~~l~~~~-~~~~~P~l 316 (767)
-||+++...-.-+.+=|-. .=...+ .+.+ .++| +.. -..++++ | + |..+.+.|. ..+.+|.+
T Consensus 12 ~tFdKvi~kf~~~LVKFD~-ayPyGeKhd~F---~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~ 87 (126)
T PF07912_consen 12 LTFDKVIPKFKYVLVKFDV-AYPYGEKHDAF---KKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVI 87 (126)
T ss_dssp THHHHHGGGSSEEEEEEEE-SS--CHHHHHH---HHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEE
T ss_pred eehhheeccCceEEEEEec-cCCCcchHHHH---HHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEE
Confidence 4677777776555444431 111111 2444 5556 332 2457774 3 2 467888884 45679999
Q ss_pred EEEcCCCCceeecCCccCCCHHHHHHHHHH
Q 046627 317 AIVDPISNQHYVASKEATFNYSSMADFLHG 346 (767)
Q Consensus 317 ~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~ 346 (767)
.+|..+....-.|+...+++.++|..|+..
T Consensus 88 ~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 88 YLFVGDKEEPVRYPFDGDVTADNLQRFVKS 117 (126)
T ss_dssp EEEESSTTSEEEE-TCS-S-HHHHHHHHHH
T ss_pred EEecCCCCCCccCCccCCccHHHHHHHHHh
Confidence 999944444444566678999999999987
No 275
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=74.13 E-value=14 Score=39.82 Aligned_cols=85 Identities=14% Similarity=0.010 Sum_probs=55.0
Q ss_pred CccEEEEeecCCcC-hhhh-cccCCchhhhhcCCceEEEE--eCC-----------hhhhhhhcCCCCCcEEEEEcCCCC
Q 046627 260 DLTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRGSFFFN--DGN-----------YRLLGALTGGSTIPSLAIVDPISN 324 (767)
Q Consensus 260 ~~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkgk~~fv--D~~-----------~~~l~~~~~~~~~P~l~I~d~~~~ 324 (767)
+.+.++.|+..+-. .... ..| ++++++|.-.|++| |++ ..+.+.| ++..+|++++++++++
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L---~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~-gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPIL---QAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQL-KIRTVPAVFLADPDPN 241 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHH---HHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHc-CCCcCCeEEEEECCCC
Confidence 56777778876632 2222 455 77788887777776 432 2344445 6789999999997544
Q ss_pred ceeecCCccCCCHHHHHHHHHHHhc
Q 046627 325 QHYVASKEATFNYSSMADFLHGFLN 349 (767)
Q Consensus 325 ~kY~~~~~~~~t~e~L~~Fi~~~l~ 349 (767)
.-... ..+.++.+.|.+.+.....
T Consensus 242 ~v~~v-~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 242 QFTPI-GFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEE-EeCCCCHHHHHHHHHHHhc
Confidence 22221 1246789999999887654
No 276
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=70.20 E-value=21 Score=35.03 Aligned_cols=90 Identities=6% Similarity=-0.094 Sum_probs=56.5
Q ss_pred cCCccEEEEeecCCcC-hhhh-cccCCchhhhhcCCceEEE--EeC--ChhhhhhhcCCCCCcEEE-EEcCCCCceeecC
Q 046627 258 GHDLTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRGSFFF--NDG--NYRLLGALTGGSTIPSLA-IVDPISNQHYVAS 330 (767)
Q Consensus 258 ~~~~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkgk~~f--vD~--~~~~l~~~~~~~~~P~l~-I~d~~~~~kY~~~ 330 (767)
..+.++++.|+++|-. ...+ +.| .++|+++++.+.| +|. +..+.+.|. ....|+++ ++..+...-....
T Consensus 21 ~~~~lVVvdF~A~WCgpCk~m~p~l---~~la~~~~~~~~~~kVDVDe~~dla~~y~-I~~~~t~~~ffk~g~~~vd~~t 96 (142)
T PLN00410 21 EEERLVVIRFGHDWDETCMQMDEVL---ASVAETIKNFAVIYLVDITEVPDFNTMYE-LYDPCTVMFFFRNKHIMIDLGT 96 (142)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHH---HHHHHHcCCceEEEEEECCCCHHHHHHcC-ccCCCcEEEEEECCeEEEEEec
Confidence 3567888889988855 4444 566 8889999987665 454 467888774 45565555 6663321111111
Q ss_pred Cc------cCCCHHHHHHHHHHHhcCC
Q 046627 331 KE------ATFNYSSMADFLHGFLNGT 351 (767)
Q Consensus 331 ~~------~~~t~e~L~~Fi~~~l~Gk 351 (767)
+. ...+.+.|.+-++.++.|.
T Consensus 97 G~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 97 GNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred ccccccccccCCHHHHHHHHHHHHHHH
Confidence 11 1357788888888877664
No 277
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=70.02 E-value=14 Score=37.98 Aligned_cols=81 Identities=6% Similarity=-0.008 Sum_probs=53.5
Q ss_pred CccEEEEeecCC-cChhhh-cccCCchhhhhcCCceEEEE--eCChhhhhhhcCCCCCcEEEEEcCCCC-ceeecC---C
Q 046627 260 DLTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRGSFFFN--DGNYRLLGALTGGSTIPSLAIVDPISN-QHYVAS---K 331 (767)
Q Consensus 260 ~~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkgk~~fv--D~~~~~l~~~~~~~~~P~l~I~d~~~~-~kY~~~---~ 331 (767)
+.++++.|+.++ .....+ ..| .++|.+|.. +.|+ |++. ....| +...+|+++++..+.. ..++-. +
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l---~~LA~k~~~-vkFvkI~ad~-~~~~~-~i~~lPTlliyk~G~~v~~ivG~~~~g 175 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHL---SELARKFPD-TKFVKIISTQ-CIPNY-PDKNLPTILVYRNGDIVKQFIGLLEFG 175 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHH---HHHHHHCCC-CEEEEEEhHH-hHhhC-CCCCCCEEEEEECCEEEEEEeCchhhC
Confidence 357888888766 344444 666 888999974 5564 5543 23455 5778999999995432 233211 1
Q ss_pred ccCCCHHHHHHHHHH
Q 046627 332 EATFNYSSMADFLHG 346 (767)
Q Consensus 332 ~~~~t~e~L~~Fi~~ 346 (767)
...++.+.|+.++.+
T Consensus 176 g~~~~~~~lE~~L~~ 190 (192)
T cd02988 176 GMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCCHHHHHHHHHh
Confidence 237999999999875
No 278
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=69.66 E-value=18 Score=33.85 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=35.2
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccC-ceeeeccccC
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGY-MKSLKNGYKN 453 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~-~~iI~V~~d~ 453 (767)
+|.+||.=-|+-|+.-. .-..+++|+++|+.+ ..|+++-+.+
T Consensus 21 Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 21 GKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp TSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred CCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 89999999999999988 677999999999854 4677766655
No 279
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=69.07 E-value=8.1 Score=34.86 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=20.5
Q ss_pred CCCCCcEEEEEcCCCCceeecCCccCCCHHHHHHHH
Q 046627 309 GGSTIPSLAIVDPISNQHYVASKEATFNYSSMADFL 344 (767)
Q Consensus 309 ~~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi 344 (767)
++.++|+++++|.++..-+.+. +-.+.+.|.+++
T Consensus 79 ~v~gtPt~~~~d~~G~~v~~~~--G~~~~~~l~~~L 112 (112)
T PF13098_consen 79 GVNGTPTIVFLDKDGKIVYRIP--GYLSPEELLKML 112 (112)
T ss_dssp T--SSSEEEECTTTSCEEEEEE--SS--HHHHHHHH
T ss_pred CCCccCEEEEEcCCCCEEEEec--CCCCHHHHHhhC
Confidence 6889999999996544344444 356777777654
No 280
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=68.56 E-value=16 Score=34.67 Aligned_cols=85 Identities=9% Similarity=-0.022 Sum_probs=49.9
Q ss_pred chHHhhcC--CccEEEEeec-------CCc-Chhhh-cccCCchhhhhcCCceEEE--EeCC---------hhhhhhhcC
Q 046627 252 SDQYYLGH--DLTTAKDVKV-------GEK-SSSQI-SMSGDPQLEFQGFRGSFFF--NDGN---------YRLLGALTG 309 (767)
Q Consensus 252 tf~~~~~~--~~p~~~~f~~-------~~e-~s~~~-e~l~~~~~~A~~fkgk~~f--vD~~---------~~~l~~~~~ 309 (767)
+|...... +.|+++.|++ .|= ..... ..+ ++++.++++++.| +|.+ ..+...+ +
T Consensus 11 ~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l---~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~-~ 86 (119)
T cd02952 11 EFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVV---REALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP-K 86 (119)
T ss_pred HHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhH---HHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc-C
Confidence 34444433 6789999988 552 22222 334 7778888855444 5653 2444444 3
Q ss_pred CC-CCcEEEEEcCCCCceeecCCccCCCHHHHHHHH
Q 046627 310 GS-TIPSLAIVDPISNQHYVASKEATFNYSSMADFL 344 (767)
Q Consensus 310 ~~-~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi 344 (767)
.. ++|++++++. +.+.. ++.=++.+.+..|+
T Consensus 87 I~~~iPT~~~~~~--~~~l~--~~~c~~~~~~~~~~ 118 (119)
T cd02952 87 LTTGVPTLLRWKT--PQRLV--EDECLQADLVEMFF 118 (119)
T ss_pred cccCCCEEEEEcC--Cceec--chhhcCHHHHHHhh
Confidence 45 8999999963 33333 22346777777775
No 281
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=68.03 E-value=23 Score=35.54 Aligned_cols=100 Identities=9% Similarity=0.108 Sum_probs=61.6
Q ss_pred CCcEEEEEEcCcCh-hhHHHHHHHHHHHHHHcc---CceeeeccccC--CcccchhhHHhhccccCcEEEEecCCcccch
Q 046627 411 NEDVVVLFSSSWCG-FCQRMELVVREVFRAVKG---YMKSLKNGYKN--GQRDLNGEYLKNINFKLPRIYLMDCTLNDCS 484 (767)
Q Consensus 411 ~K~VLV~FyApWCg-~Ck~~~P~leeLak~fk~---~~~iI~V~~d~--~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~ 484 (767)
+|.+||.|.-+-|+ .|-.+...+.++.+.+.. +..++.|++|- +..+..+++++..+-++..+ ..+..++.
T Consensus 52 Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~~~~~~~l---tg~~~~i~ 128 (174)
T PF02630_consen 52 GKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKFGPDFIGL---TGSREEIE 128 (174)
T ss_dssp TSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCHTTTCEEE---EEEHHHHH
T ss_pred CCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhcCCCccee---EeCHHHHH
Confidence 89999999999995 599888888888887754 45677777764 34445566776665554333 22222222
Q ss_pred HHHhhcCC----------------CCcccEEEEEeCCCeeEEEEeC
Q 046627 485 LILKSMTQ----------------REVYPALVLFPAERKNAISFKG 514 (767)
Q Consensus 485 ~~L~~~~~----------------I~gyPTi~Lf~aggK~~i~y~G 514 (767)
. +.+.|+ +.--..++|++++|+....|++
T Consensus 129 ~-l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 129 E-LAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp H-HHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred H-HHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 2 233343 2234567888888887766754
No 282
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=64.75 E-value=8.5 Score=40.11 Aligned_cols=105 Identities=12% Similarity=0.157 Sum_probs=70.2
Q ss_pred ceeee-cccccccccccccCCcccccccCCCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhh
Q 046627 383 SIPRV-TVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGE 461 (767)
Q Consensus 383 ~V~~L-t~~nF~e~V~~d~~~~~~~a~a~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~ 461 (767)
.|.++ +++.|-+.|. .. ...-.++|..|-+--.-|-.+...+.=||..|..
T Consensus 139 ~V~El~~gkqfld~id-ke--------~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~------------------- 190 (273)
T KOG3171|consen 139 FVYELETGKQFLDTID-KE--------LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI------------------- 190 (273)
T ss_pred eEEEeccchhHHHHHh-cc--------cceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-------------------
Confidence 35665 5677888882 11 1245788999999999999999999888887753
Q ss_pred HHhhccccCcEEEEecCCcccchHHHhhcCCCCcccEEEEEeCCCeeEEE-------EeCCCCHHHHHHHHHHhC
Q 046627 462 YLKNINFKLPRIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKNAIS-------FKGDISVADVIKFIADHG 529 (767)
Q Consensus 462 ~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~~I~gyPTi~Lf~aggK~~i~-------y~G~~t~e~L~~FI~k~~ 529 (767)
+.|.++-.+.-.. ..+|...++||+.||. ||..+-. +--.....+|..||++.+
T Consensus 191 ---------vKFckikss~~ga----s~~F~~n~lP~LliYk-gGeLIgNFv~va~qlgedffa~dle~FL~e~g 251 (273)
T KOG3171|consen 191 ---------VKFCKIKSSNTGA----SDRFSLNVLPTLLIYK-GGELIGNFVSVAEQLGEDFFAGDLESFLNEYG 251 (273)
T ss_pred ---------eeEEEeeeccccc----hhhhcccCCceEEEee-CCchhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence 2444544443322 2368889999999994 5542211 112445678888988754
No 283
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=64.44 E-value=13 Score=34.42 Aligned_cols=69 Identities=17% Similarity=0.076 Sum_probs=43.2
Q ss_pred echHHh-hcCCccEEEEeecCCc-Chhhh-cccCCchhhhhcCC---ceEEEE--eCC----hhhhhhhcCCCCCcEEEE
Q 046627 251 ASDQYY-LGHDLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFR---GSFFFN--DGN----YRLLGALTGGSTIPSLAI 318 (767)
Q Consensus 251 etf~~~-~~~~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fk---gk~~fv--D~~----~~~l~~~~~~~~~P~l~I 318 (767)
.+|... .+...++++.|+++|- ....+ ..+ .++|+.|+ +.+.|+ |.+ ..+.+.| +...+|++++
T Consensus 9 ~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~---~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~-~i~~~Pt~~l 84 (114)
T cd02992 9 ASFNSALLGSPSAWLVEFYASWCGHCRAFAPTW---KKLARDLRKWRPVVRVAAVDCADEENVALCRDF-GVTGYPTLRY 84 (114)
T ss_pred HhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHH---HHHHHHHHhcCCceEEEEEeccchhhHHHHHhC-CCCCCCEEEE
Confidence 445544 4555688888887662 23333 444 66777665 456664 532 3455556 5688999999
Q ss_pred EcCCC
Q 046627 319 VDPIS 323 (767)
Q Consensus 319 ~d~~~ 323 (767)
+..+.
T Consensus 85 f~~~~ 89 (114)
T cd02992 85 FPPFS 89 (114)
T ss_pred ECCCC
Confidence 98654
No 284
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=63.94 E-value=19 Score=37.02 Aligned_cols=110 Identities=8% Similarity=0.042 Sum_probs=72.8
Q ss_pred CCcEEEEEE-cCcChhhHHHHHHHHHHHHHHccC-ceeeeccccCCcccchhhHH--hhcc---ccCcEEEEecCCcccc
Q 046627 411 NEDVVVLFS-SSWCGFCQRMELVVREVFRAVKGY-MKSLKNGYKNGQRDLNGEYL--KNIN---FKLPRIYLMDCTLNDC 483 (767)
Q Consensus 411 ~K~VLV~Fy-ApWCg~Ck~~~P~leeLak~fk~~-~~iI~V~~d~~~~~~~~~~v--~~~~---~~~~vIa~ID~t~ND~ 483 (767)
+|.+++.|| +..-.-|-.+...+.+.+..|+.. ..+|++++|..-....+.+- ++.+ +++|.++..+.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~----- 107 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKG----- 107 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCch-----
Confidence 577777777 667778888999999999999764 58999999986443322211 1122 66788876443
Q ss_pred hHHHhhcCCCC------cccEEEEEeCCCee--EEEEe--CCCCHHHHHHHHHH
Q 046627 484 SLILKSMTQRE------VYPALVLFPAERKN--AISFK--GDISVADVIKFIAD 527 (767)
Q Consensus 484 ~~~L~~~~~I~------gyPTi~Lf~aggK~--~i~y~--G~~t~e~L~~FI~k 527 (767)
.++..|++- .+=.+++++++|+. ...|. =+|+.+++++.|+.
T Consensus 108 --~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idA 159 (194)
T COG0450 108 --EIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDA 159 (194)
T ss_pred --hHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence 345566653 34457788888863 23332 26899999877764
No 285
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=63.46 E-value=78 Score=32.84 Aligned_cols=118 Identities=11% Similarity=0.071 Sum_probs=71.1
Q ss_pred CCCcEEEEEEcCcChh-hHHHHHHHHHHHHHHc-c---CceeeeccccCCcccchhhHHhhccc-cC-cEEEEecCCccc
Q 046627 410 WNEDVVVLFSSSWCGF-CQRMELVVREVFRAVK-G---YMKSLKNGYKNGQRDLNGEYLKNINF-KL-PRIYLMDCTLND 482 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~-Ck~~~P~leeLak~fk-~---~~~iI~V~~d~~~~~~~~~~v~~~~~-~~-~vIa~ID~t~ND 482 (767)
+++++||.|-=+.|+- |-.+...+..+-++.. . +..++-|++|-.. .+.+.++++.. .+ +.+..+-.+...
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPer--Dtp~~lk~Y~~~~~~~~~~~ltg~~~~ 143 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPER--DTPEVLKKYAELNFDPRWIGLTGTPEQ 143 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCC--CCHHHHHHHhcccCCCCeeeeeCCHHH
Confidence 4899999999888886 9988888888877776 2 2334444444322 22344443333 22 223222222212
Q ss_pred chHHHhhcCCCC---------------cccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhCC
Q 046627 483 CSLILKSMTQRE---------------VYPALVLFPAERKNAISFKGDISVADVIKFIADHGN 530 (767)
Q Consensus 483 ~~~~L~~~~~I~---------------gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~~ 530 (767)
. ..+++.|+|. --..+++++++|+....|.+....+.+++.|++...
T Consensus 144 ~-~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 144 I-EEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred H-HHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 1 2234444433 334567888888887778777778999988887543
No 286
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=62.65 E-value=33 Score=28.87 Aligned_cols=71 Identities=6% Similarity=-0.034 Sum_probs=42.4
Q ss_pred EeecCC-cChhhh-cccCCchhhhhcCCceEEE--EeC--ChhhhhhhcCCCCCcEEEEEcCCCCceeecCCccCCCHHH
Q 046627 266 DVKVGE-KSSSQI-SMSGDPQLEFQGFRGSFFF--NDG--NYRLLGALTGGSTIPSLAIVDPISNQHYVASKEATFNYSS 339 (767)
Q Consensus 266 ~f~~~~-e~s~~~-e~l~~~~~~A~~fkgk~~f--vD~--~~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~ 339 (767)
+|+.++ ...... ..+ .++++.+++.+.| +|. +....+.| +..++|++++ + ++ ..+. +..+.+.
T Consensus 5 ~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~vd~~~~~~~~~~~-~v~~vPt~~~-~--g~--~~~~--G~~~~~~ 73 (82)
T TIGR00411 5 LFTSPTCPYCPAAKRVV---EEVAKEMGDAVEVEYINVMENPQKAMEY-GIMAVPAIVI-N--GD--VEFI--GAPTKEE 73 (82)
T ss_pred EEECCCCcchHHHHHHH---HHHHHHhcCceEEEEEeCccCHHHHHHc-CCccCCEEEE-C--CE--EEEe--cCCCHHH
Confidence 455444 233333 444 6678888776655 465 34555555 5778999875 3 22 2232 2457888
Q ss_pred HHHHHHHH
Q 046627 340 MADFLHGF 347 (767)
Q Consensus 340 L~~Fi~~~ 347 (767)
|.++++..
T Consensus 74 l~~~l~~~ 81 (82)
T TIGR00411 74 LVEAIKKR 81 (82)
T ss_pred HHHHHHhh
Confidence 98888764
No 287
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=61.25 E-value=22 Score=35.14 Aligned_cols=69 Identities=7% Similarity=-0.036 Sum_probs=42.6
Q ss_pred echHHhh--cCCccEEEEeecCC-cChhhh-cccCCchhhhhcCCc-eEEE--EeC--ChhhhhhhcC-----CCCCcEE
Q 046627 251 ASDQYYL--GHDLTTAKDVKVGE-KSSSQI-SMSGDPQLEFQGFRG-SFFF--NDG--NYRLLGALTG-----GSTIPSL 316 (767)
Q Consensus 251 etf~~~~--~~~~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~~fkg-k~~f--vD~--~~~~l~~~~~-----~~~~P~l 316 (767)
++|.... +.+.++++.|+.+| .....+ ..+ .++|+++.+ ++.| +|. +..+.+.|.. ..++|++
T Consensus 36 ~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l---~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ 112 (152)
T cd02962 36 KTLEEELERDKRVTWLVEFFTTWSPECVNFAPVF---AELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTI 112 (152)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEE
Confidence 3455443 23467788888766 333344 455 777888874 4666 465 3667776731 2349999
Q ss_pred EEEcCC
Q 046627 317 AIVDPI 322 (767)
Q Consensus 317 ~I~d~~ 322 (767)
+++..+
T Consensus 113 ilf~~G 118 (152)
T cd02962 113 ILFQGG 118 (152)
T ss_pred EEEECC
Confidence 999843
No 288
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=61.13 E-value=31 Score=31.44 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=51.4
Q ss_pred hHHhhcCCccEEEEeecCCcChhhhcccCCchhhhhcCCceEEEEeC-ChhhhhhhcCCCCCcEEEEEcCCC------Cc
Q 046627 253 DQYYLGHDLTTAKDVKVGEKSSSQISMSGDPQLEFQGFRGSFFFNDG-NYRLLGALTGGSTIPSLAIVDPIS------NQ 325 (767)
Q Consensus 253 f~~~~~~~~p~~~~f~~~~e~s~~~e~l~~~~~~A~~fkgk~~fvD~-~~~~l~~~~~~~~~P~l~I~d~~~------~~ 325 (767)
.+.+.......++-|+. ..+.+.++.+ .++|..+|..+.|.-+ +..++..+ +. .|+++++.|.. ..
T Consensus 11 l~~f~~~~~~~Vvg~f~-~~~~~~~~~F---~~vA~~~R~d~~F~~~~~~~~~~~~-~~--~~~ivl~~p~~~~~k~de~ 83 (104)
T cd03069 11 FEKFLSDDDASVVGFFE-DEDSKLLSEF---LKAADTLRESFRFAHTSDKQLLEKY-GY--GEGVVLFRPPRLSNKFEDS 83 (104)
T ss_pred HHHHhccCCcEEEEEEc-CCCchHHHHH---HHHHHhhhhcCEEEEEChHHHHHhc-CC--CCceEEEechhhhcccCcc
Confidence 34444444444444553 2333445555 8899999988888643 34555555 33 68888996521 22
Q ss_pred eeecCCccCCCHHHHHHHHHH
Q 046627 326 HYVASKEATFNYSSMADFLHG 346 (767)
Q Consensus 326 kY~~~~~~~~t~e~L~~Fi~~ 346 (767)
...|.+ .++.+.|.+||..
T Consensus 84 ~~~y~g--~~~~~~l~~fi~~ 102 (104)
T cd03069 84 SVKFDG--DLDSSKIKKFIRE 102 (104)
T ss_pred cccccC--cCCHHHHHHHHHh
Confidence 233533 5788999999976
No 289
>smart00594 UAS UAS domain.
Probab=60.85 E-value=37 Score=31.80 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=48.2
Q ss_pred hcCCccEEEEeecCCc-Chhhh--cccCCchhhhhcCCceEEEE--eCC----hhhhhhhcCCCCCcEEEEEcCCCCce-
Q 046627 257 LGHDLTTAKDVKVGEK-SSSQI--SMSGDPQLEFQGFRGSFFFN--DGN----YRLLGALTGGSTIPSLAIVDPISNQH- 326 (767)
Q Consensus 257 ~~~~~p~~~~f~~~~e-~s~~~--e~l~~~~~~A~~fkgk~~fv--D~~----~~~l~~~~~~~~~P~l~I~d~~~~~k- 326 (767)
...++++.++|...+- ....+ +-+.+ .++.+-++.+++++ |.+ .+++..| +..++|+++++++..+..
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~-~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~-~~~~~P~~~~l~~~~g~~~ 101 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCN-EAVKSLIRENFIFWQVDVDTSEGQRVSQFY-KLDSFPYVAIVDPRTGQRV 101 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccC-HHHHHHHHcCEEEEEecCCChhHHHHHHhc-CcCCCCEEEEEecCCCcee
Confidence 3445677767765542 22222 22211 23334444556663 542 3455555 677899999999886431
Q ss_pred --eecCCccCCCHHHHHHHH
Q 046627 327 --YVASKEATFNYSSMADFL 344 (767)
Q Consensus 327 --Y~~~~~~~~t~e~L~~Fi 344 (767)
-...-.+..+.+.|..++
T Consensus 102 ~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 102 IEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEeccccCCCCHHHHHHhh
Confidence 222234567888887775
No 290
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=60.20 E-value=22 Score=33.64 Aligned_cols=59 Identities=12% Similarity=-0.069 Sum_probs=42.4
Q ss_pred CCccEEEEeecCCcC-hhhh-cccCCchhhhhcCCceEEE--EeC--ChhhhhhhcCCCCCcEEEEEcC
Q 046627 259 HDLTTAKDVKVGEKS-SSQI-SMSGDPQLEFQGFRGSFFF--NDG--NYRLLGALTGGSTIPSLAIVDP 321 (767)
Q Consensus 259 ~~~p~~~~f~~~~e~-s~~~-e~l~~~~~~A~~fkgk~~f--vD~--~~~~l~~~~~~~~~P~l~I~d~ 321 (767)
.+.++++.|.++|-. .-.+ +.| .++|++|++.+.| ||. ...+.+.| +....|+++++..
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l---~ela~~~~~~~~f~kVDVDev~dva~~y-~I~amPtfvffkn 77 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDIL---SKTSHDLSKMASIYLVDVDKVPVYTQYF-DISYIPSTIFFFN 77 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHH---HHHHHHccCceEEEEEeccccHHHHHhc-CceeCcEEEEEEC
Confidence 478888889887754 3334 666 8889999874544 565 46777777 4567999998883
No 291
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=58.58 E-value=45 Score=31.82 Aligned_cols=93 Identities=12% Similarity=0.082 Sum_probs=51.2
Q ss_pred HHhhcCCccEEEEeecCC-cChhhhcc--cCCchhhhhcCCceEEEE--eCC--hhh----hhh---hcCCCCCcEEEEE
Q 046627 254 QYYLGHDLTTAKDVKVGE-KSSSQISM--SGDPQLEFQGFRGSFFFN--DGN--YRL----LGA---LTGGSTIPSLAIV 319 (767)
Q Consensus 254 ~~~~~~~~p~~~~f~~~~-e~s~~~e~--l~~~~~~A~~fkgk~~fv--D~~--~~~----l~~---~~~~~~~P~l~I~ 319 (767)
......++|+.+.|...+ .....++. +.+ .++++.....|.++ |.+ ..+ ++. +.+..++|+++++
T Consensus 9 ~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~-~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl 87 (124)
T cd02955 9 EKARREDKPIFLSIGYSTCHWCHVMEHESFED-EEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFL 87 (124)
T ss_pred HHHHHcCCeEEEEEccCCCHhHHHHHHHccCC-HHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 345667889888887655 22222321 211 24455444456554 643 222 221 2367899999999
Q ss_pred cCCCCceee---cCCccCCCHHHHHHHHHHH
Q 046627 320 DPISNQHYV---ASKEATFNYSSMADFLHGF 347 (767)
Q Consensus 320 d~~~~~kY~---~~~~~~~t~e~L~~Fi~~~ 347 (767)
++.....|. ++...+.+...+..+++..
T Consensus 88 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 88 TPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred CCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 987654432 2223345556777777664
No 292
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=58.03 E-value=23 Score=32.89 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=55.3
Q ss_pred echHHhhcCCccEEEEeecCCcChhhh-cccCCchhhhhcCCce--EEEEeCC----hhhhhhhcCCC----CCcEEEEE
Q 046627 251 ASDQYYLGHDLTTAKDVKVGEKSSSQI-SMSGDPQLEFQGFRGS--FFFNDGN----YRLLGALTGGS----TIPSLAIV 319 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~e~s~~~-e~l~~~~~~A~~fkgk--~~fvD~~----~~~l~~~~~~~----~~P~l~I~ 319 (767)
..|-+.+-....+.++|.....++.+. ..+ .++|+..||. +.|+|++ ..+...+ .+. .-|.. +.
T Consensus 10 KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~---~~~A~~vkG~gT~~~vdCgd~e~kKLCKKl-Kv~~~~kp~~~~-Lk 84 (112)
T cd03067 10 KDFKKLLRTRNNVLVLYSKSAKSAEALLKLL---SDVAQAVKGQGTIAWIDCGDSESRKLCKKL-KVDPSSKPKPVE-LK 84 (112)
T ss_pred HHHHHHHhhcCcEEEEEecchhhHHHHHHHH---HHHHHHhcCceeEEEEecCChHHHHHHHHH-ccCCCCCCCcch-hh
Confidence 446677778888888887655555444 666 8899999865 8888864 3455555 222 23432 22
Q ss_pred cCCCC-ceeecCCccCCCHHHHHHHHHH
Q 046627 320 DPISN-QHYVASKEATFNYSSMADFLHG 346 (767)
Q Consensus 320 d~~~~-~kY~~~~~~~~t~e~L~~Fi~~ 346 (767)
+...| -|=.| +..++..+|.+|+.+
T Consensus 85 HYKdG~fHkdY--dR~~t~kSmv~FlrD 110 (112)
T cd03067 85 HYKDGDFHTEY--NRQLTFKSMVAFLRD 110 (112)
T ss_pred cccCCCccccc--cchhhHHHHHHHhhC
Confidence 22222 12123 347899999999976
No 293
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=55.39 E-value=10 Score=34.57 Aligned_cols=21 Identities=10% Similarity=0.264 Sum_probs=17.6
Q ss_pred EEEEcCcChhhHHHHHHHHHH
Q 046627 416 VLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 416 V~FyApWCg~Ck~~~P~leeL 436 (767)
..|+.|+|+.|++....+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH 22 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc
Confidence 568999999999988777664
No 294
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=54.32 E-value=51 Score=39.49 Aligned_cols=87 Identities=11% Similarity=0.107 Sum_probs=52.1
Q ss_pred cCCccEEEEeecCC-cChhhhc-ccCCchhhhhcCCceEEE--EeCC------hhhhhhhcCCCCCcEEEEEcCCCCc--
Q 046627 258 GHDLTTAKDVKVGE-KSSSQIS-MSGDPQLEFQGFRGSFFF--NDGN------YRLLGALTGGSTIPSLAIVDPISNQ-- 325 (767)
Q Consensus 258 ~~~~p~~~~f~~~~-e~s~~~e-~l~~~~~~A~~fkgk~~f--vD~~------~~~l~~~~~~~~~P~l~I~d~~~~~-- 325 (767)
..++|+.+.|+.+| ......+ ..-...++.+++++ +.+ +|.+ ..+++.| +..++|++++++++.+.
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~-~v~g~Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHY-NVLGLPTILFFDAQGQEIP 549 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHc-CCCCCCEEEEECCCCCCcc
Confidence 45788888888766 2222221 11011344555554 444 4532 3455666 57889999999976443
Q ss_pred eeecCCccCCCHHHHHHHHHHHh
Q 046627 326 HYVASKEATFNYSSMADFLHGFL 348 (767)
Q Consensus 326 kY~~~~~~~~t~e~L~~Fi~~~l 348 (767)
.+.+. +.++.+.+.+++++..
T Consensus 550 ~~r~~--G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 550 DARVT--GFMDAAAFAAHLRQLQ 570 (571)
T ss_pred ccccc--CCCCHHHHHHHHHHhc
Confidence 23333 3678999999998753
No 295
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=53.66 E-value=65 Score=31.84 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=26.8
Q ss_pred CCCCCcEEEEEcCCCCcee-ecCCccCCCHHHHHHHHHHH
Q 046627 309 GGSTIPSLAIVDPISNQHY-VASKEATFNYSSMADFLHGF 347 (767)
Q Consensus 309 ~~~~~P~l~I~d~~~~~kY-~~~~~~~~t~e~L~~Fi~~~ 347 (767)
+...+|+.+++|+.++..+ .+. +.++.+.|.+.++..
T Consensus 115 ~v~~iPTt~LID~~G~~i~~~~~--G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 115 RPVVTPATFLVNVNTRKAYPVLQ--GAVDEAELANRMDEI 152 (153)
T ss_pred CCCCCCeEEEEeCCCCEEEEEee--cccCHHHHHHHHHHh
Confidence 5678999999998755322 333 367888888888764
No 296
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=53.62 E-value=11 Score=34.75 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=17.0
Q ss_pred EEEEcCcChhhHHHHHHHHHH
Q 046627 416 VLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 416 V~FyApWCg~Ck~~~P~leeL 436 (767)
..|+.|||+.|++....+++-
T Consensus 2 ~iy~~~~C~~crka~~~L~~~ 22 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR 22 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc
Confidence 568999999999988776543
No 297
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=53.39 E-value=32 Score=40.69 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=33.3
Q ss_pred eCChhhhhhhcCCCCCcEEEEEcCCCCceeecCCccCCCHHHHHHHHHHH
Q 046627 298 DGNYRLLGALTGGSTIPSLAIVDPISNQHYVASKEATFNYSSMADFLHGF 347 (767)
Q Consensus 298 D~~~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~ 347 (767)
|.+..+.+.| ++..+|+++|++++....+.+. +..+.+.|.+||+.-
T Consensus 126 D~~~~lak~f-gV~giPTt~IIDkdGkIV~~~~--G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 126 DNGGTLAQSL-NISVYPSWAIIGKDGDVQRIVK--GSISEAQALALIRNP 172 (521)
T ss_pred cccHHHHHHc-CCCCcCeEEEEcCCCeEEEEEe--CCCCHHHHHHHHHHh
Confidence 3344555555 5788999999997765445443 368899999999943
No 298
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=53.39 E-value=63 Score=29.16 Aligned_cols=87 Identities=11% Similarity=0.154 Sum_probs=52.4
Q ss_pred hHHhhc-CCccEEEEeecCCcChhhhcccCCchhhhhcCCceEEEEeC-ChhhhhhhcCCCCCcEEEEEcCCCCceeecC
Q 046627 253 DQYYLG-HDLTTAKDVKVGEKSSSQISMSGDPQLEFQGFRGSFFFNDG-NYRLLGALTGGSTIPSLAIVDPISNQHYVAS 330 (767)
Q Consensus 253 f~~~~~-~~~p~~~~f~~~~e~s~~~e~l~~~~~~A~~fkgk~~fvD~-~~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~ 330 (767)
...+.. .....++-|+. ..+.+.++.+ .++|..+|..+.|.-. +..+...+ + -..|+++++.......-.|+
T Consensus 11 ~e~~~~~~~~~~Vvg~f~-~~~~~~~~~F---~~vA~~~R~d~~F~~~~~~~~~~~~-~-~~~~~i~l~~~~~e~~~~y~ 84 (102)
T cd03066 11 LQAFENIEDDIKLIGYFK-SEDSEHYKAF---EEAAEEFHPYIKFFATFDSKVAKKL-G-LKMNEVDFYEPFMEEPVTIP 84 (102)
T ss_pred HHHHhcccCCeEEEEEEC-CCCCHHHHHH---HHHHHhhhcCCEEEEECcHHHHHHc-C-CCCCcEEEeCCCCCCCcccC
Confidence 445554 33333333443 3344555555 8999999988888533 34555544 2 34788988864223233353
Q ss_pred CccCCCHHHHHHHHHH
Q 046627 331 KEATFNYSSMADFLHG 346 (767)
Q Consensus 331 ~~~~~t~e~L~~Fi~~ 346 (767)
.+.++.+.|.+||+.
T Consensus 85 -~g~~~~~~l~~fi~~ 99 (102)
T cd03066 85 -DKPYSEEELVDFVEE 99 (102)
T ss_pred -CCCCCHHHHHHHHHH
Confidence 236799999999976
No 299
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=49.24 E-value=32 Score=27.05 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=16.7
Q ss_pred EEEEcCcChhhHHHHHHHHHH
Q 046627 416 VLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 416 V~FyApWCg~Ck~~~P~leeL 436 (767)
..|+.++|++|.+..-.++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~ 22 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEK 22 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHc
Confidence 357889999999988777655
No 300
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=49.18 E-value=16 Score=30.47 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=16.7
Q ss_pred EEEEcCcChhhHHHHHHHHHH
Q 046627 416 VLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 416 V~FyApWCg~Ck~~~P~leeL 436 (767)
+.|+.+||++|.+..-.+.+.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~ 22 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA 22 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc
Confidence 467899999999988776654
No 301
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=48.42 E-value=56 Score=32.39 Aligned_cols=50 Identities=20% Similarity=0.093 Sum_probs=37.3
Q ss_pred EeCChhhhhhhcCCCCCcEEEEEcCCCCceeecCCccCCCHHHHHHHHHHHhc
Q 046627 297 NDGNYRLLGALTGGSTIPSLAIVDPISNQHYVASKEATFNYSSMADFLHGFLN 349 (767)
Q Consensus 297 vD~~~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~l~ 349 (767)
.|.+..+...| +..++|+.+++|+++...|.+. +..+.+.+.+.++.++.
T Consensus 123 ~D~~~~~~~~~-~v~~~P~~~~id~~G~i~~~~~--G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 123 IDPNGKLGLDL-GVYGAPETFLVDGNGVILYRHA--GPLNNEVWTEGFLPAME 172 (173)
T ss_pred ECCCCchHHhc-CCeeCCeEEEEcCCceEEEEEe--ccCCHHHHHHHHHHHhh
Confidence 46666666666 4667999999998766666654 36889999999998873
No 302
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=47.90 E-value=43 Score=33.03 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=18.1
Q ss_pred EEEEEcC------cChhhHHHHHHHHHH
Q 046627 415 VVLFSSS------WCGFCQRMELVVREV 436 (767)
Q Consensus 415 LV~FyAp------WCg~Ck~~~P~leeL 436 (767)
+|.|.++ ||++|++....|+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~ 29 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF 29 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC
Confidence 5667788 999999999888765
No 303
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=47.50 E-value=16 Score=33.89 Aligned_cols=21 Identities=14% Similarity=0.396 Sum_probs=17.3
Q ss_pred EEEEcCcChhhHHHHHHHHHH
Q 046627 416 VLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 416 V~FyApWCg~Ck~~~P~leeL 436 (767)
..|+.|+|+.|++....+++-
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH 22 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc
Confidence 468899999999988777653
No 304
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.47 E-value=67 Score=39.02 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=32.5
Q ss_pred cCCCcEEEEEEcCcChhhHHHHHHH---HHHHHHHccCceeeecc
Q 046627 409 AWNEDVVVLFSSSWCGFCQRMELVV---REVFRAVKGYMKSLKNG 450 (767)
Q Consensus 409 a~~K~VLV~FyApWCg~Ck~~~P~l---eeLak~fk~~~~iI~V~ 450 (767)
..+|++||-.-.+||-.|.-|...= .++|+.++.+..-|+|+
T Consensus 41 ~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVD 85 (667)
T COG1331 41 EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVD 85 (667)
T ss_pred HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEC
Confidence 3599999999999999999998653 66888887765433433
No 305
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=46.60 E-value=1.5e+02 Score=27.25 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=48.0
Q ss_pred CcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhcC
Q 046627 412 EDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSMT 491 (767)
Q Consensus 412 K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~~ 491 (767)
+.++|-|+..--+ .+...|.++|..+++...| +... + ..+...+
T Consensus 20 ~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F---------------------------~~t~---~---~~~~~~~ 63 (107)
T cd03068 20 DVIIIGVFSGEED---PAYQLYQDAANSLREDYKF---------------------------HHTF---D---SEIFKSL 63 (107)
T ss_pred CEEEEEEECCCCC---HHHHHHHHHHHhcccCCEE---------------------------EEEC---h---HHHHHhc
Confidence 6667777765433 3566788899998776533 1110 0 0122345
Q ss_pred CCCcccEEEEEeCC------CeeEEEEeCC-CCHHH-HHHHHHHh
Q 046627 492 QREVYPALVLFPAE------RKNAISFKGD-ISVAD-VIKFIADH 528 (767)
Q Consensus 492 ~I~gyPTi~Lf~ag------gK~~i~y~G~-~t~e~-L~~FI~k~ 528 (767)
++. .|.+++|.+. ......|.|. .+.++ |.+||.+|
T Consensus 64 ~~~-~~~vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 64 KVS-PGQLVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred CCC-CCceEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 554 4667777332 1235678887 67766 99999875
No 306
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=46.23 E-value=20 Score=34.45 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=17.5
Q ss_pred EEEEEcCcChhhHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeL 436 (767)
+..|+.|||+.|++....+++-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~ 23 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4578899999999988776553
No 307
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=45.54 E-value=16 Score=38.13 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=29.6
Q ss_pred HhhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHhC
Q 046627 487 LKSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADHG 529 (767)
Q Consensus 487 L~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~~ 529 (767)
+...++|.+.||+++-. + .|.|..+.+.|.+.|....
T Consensus 207 ~a~~~gv~gTPt~~v~~--~----~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 207 LAQQLGVNGTPTFIVNG--K----LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHhcCCCcCCeEEECC--e----eecCCCCHHHHHHHHHHhh
Confidence 45678999999998862 2 6889999999999988653
No 308
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=42.11 E-value=70 Score=41.27 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=51.8
Q ss_pred CCccEEEEeecCCc-Ch-hhhcccCCchhhhhcCCce-EEEE-------e------------------------CChhhh
Q 046627 259 HDLTTAKDVKVGEK-SS-SQISMSGDPQLEFQGFRGS-FFFN-------D------------------------GNYRLL 304 (767)
Q Consensus 259 ~~~p~~~~f~~~~e-~s-~~~e~l~~~~~~A~~fkgk-~~fv-------D------------------------~~~~~l 304 (767)
.++++++.|+..|= .. .+...| ++++++|+++ |.|+ | .+..++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L---~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~ 495 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDL---EFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLW 495 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHH---HHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHH
Confidence 46788888887662 22 222444 6667777654 3332 1 112233
Q ss_pred hhhcCCCCCcEEEEEcCCCCceeecCCccCCCHHHHHHHHHHHh
Q 046627 305 GALTGGSTIPSLAIVDPISNQHYVASKEATFNYSSMADFLHGFL 348 (767)
Q Consensus 305 ~~~~~~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~l 348 (767)
..| +...+|++++++++....+.+. ++...+.|.++++..+
T Consensus 496 ~~~-~V~~iPt~ilid~~G~iv~~~~--G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 496 REL-GVSSWPTFAVVSPNGKLIAQLS--GEGHRKDLDDLVEAAL 536 (1057)
T ss_pred Hhc-CCCccceEEEECCCCeEEEEEe--cccCHHHHHHHHHHHH
Confidence 334 5778999999997765444443 3567888888888865
No 309
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=38.40 E-value=26 Score=32.67 Aligned_cols=20 Identities=15% Similarity=0.428 Sum_probs=17.0
Q ss_pred EEEEcCcChhhHHHHHHHHH
Q 046627 416 VLFSSSWCGFCQRMELVVRE 435 (767)
Q Consensus 416 V~FyApWCg~Ck~~~P~lee 435 (767)
..|+.++|+.|++....+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA 21 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 46889999999998877766
No 310
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=38.08 E-value=1.6e+02 Score=27.65 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=50.5
Q ss_pred CCccEEEEeecCC-cChhhh--cccCCchhhhhcCCceEEEE--eCC----hhhhhhhcCCCCCcEEEEEcCCCCc-eee
Q 046627 259 HDLTTAKDVKVGE-KSSSQI--SMSGDPQLEFQGFRGSFFFN--DGN----YRLLGALTGGSTIPSLAIVDPISNQ-HYV 328 (767)
Q Consensus 259 ~~~p~~~~f~~~~-e~s~~~--e~l~~~~~~A~~fkgk~~fv--D~~----~~~l~~~~~~~~~P~l~I~d~~~~~-kY~ 328 (767)
.+++++++|.++. .+...+ +-|.+ .++.+-+...++++ |.. +++...+ +...+|+++++.+..++ .-+
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~eg~~la~~l-~~~~~P~~~~l~~~~~~~~vv 93 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPEGYRVSQAL-RERTYPFLAMIMLKDNRMTIV 93 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChHHHHHHHHh-CCCCCCEEEEEEecCCceEEE
Confidence 3455555565432 333343 22311 23333444456554 653 4555555 57799999999765542 112
Q ss_pred cCCccCCCHHHHHHHHHHHhcC
Q 046627 329 ASKEATFNYSSMADFLHGFLNG 350 (767)
Q Consensus 329 ~~~~~~~t~e~L~~Fi~~~l~G 350 (767)
..-.+.++.+.|...+..+.+.
T Consensus 94 ~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 94 GRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred EEEeCCCCHHHHHHHHHHHHhc
Confidence 2223578999999888887653
No 311
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=37.56 E-value=1.6e+02 Score=33.89 Aligned_cols=90 Identities=9% Similarity=0.083 Sum_probs=59.9
Q ss_pred CCcEEEEEEcCcChhhHHHH-HHHHH--HHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHH
Q 046627 411 NEDVVVLFSSSWCGFCQRME-LVVRE--VFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLIL 487 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~-P~lee--Lak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L 487 (767)
+|.+||.|-+.-.....+|. -.|.. +++.+. ...+..+|++...++.. .
T Consensus 18 kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls---------------------------~~fVaIkiqags~aa~q-F 69 (506)
T KOG2507|consen 18 KKALFVVYISGDDEESDKLNRLTWTDASVSDSLS---------------------------KYFVAIKIQAGSVAATQ-F 69 (506)
T ss_pred CCeEEEEEEecCchHhhHHhhccchhhhhhhhhh---------------------------cceEEEEeccCchhhhh-h
Confidence 77888888887766666655 12221 111111 12255566655444332 3
Q ss_pred hhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHHh
Q 046627 488 KSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIADH 528 (767)
Q Consensus 488 ~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k~ 528 (767)
...|.+..+|+++|+...|+......|-.+.++|..-|.+.
T Consensus 70 s~IYp~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 70 SAIYPYVSVPSIFFIGFSGTPLEVITGFVTADELASSIEKV 110 (506)
T ss_pred hhhcccccccceeeecCCCceeEEeeccccHHHHHHHHHHH
Confidence 45688899999999988888888889999999998887764
No 312
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=36.72 E-value=28 Score=28.52 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=17.1
Q ss_pred EEEEcCcChhhHHHHHHHHHH
Q 046627 416 VLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 416 V~FyApWCg~Ck~~~P~leeL 436 (767)
..|+.+||++|++..-.+.+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc
Confidence 468889999999988777655
No 313
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=36.13 E-value=44 Score=31.93 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=26.9
Q ss_pred hhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHH
Q 046627 488 KSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIAD 527 (767)
Q Consensus 488 ~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k 527 (767)
....+|.++||+++ +|+. +.|..+.++|.+.|++
T Consensus 129 ~~~~~i~~tPt~~i---nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 129 ARQLGITGTPTFFI---NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHT-SSSSEEEE---TTCE---EETTTSHHHHHHHHHH
T ss_pred HHHcCCccccEEEE---CCEE---eCCCCCHHHHHHHHcC
Confidence 34579999999998 5553 5889999999999975
No 314
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=35.99 E-value=3.1e+02 Score=27.90 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=64.2
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCc-eeeeccccCC---cccchh---hHH-hhccccCcEEEEecCCc-c
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYM-KSLKNGYKNG---QRDLNG---EYL-KNINFKLPRIYLMDCTL-N 481 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~-~iI~V~~d~~---~~~~~~---~~v-~~~~~~~~vIa~ID~t~-N 481 (767)
+|.+||.=-|+-||.-..--..+.+|.++|+... .|++.-|..- ++..++ ..+ ...+..++++.++|+.- |
T Consensus 34 GkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~f~if~KidVNG~~ 113 (171)
T KOG1651|consen 34 GKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAEFPIFQKIDVNGDN 113 (171)
T ss_pred CeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCCCccEeEEecCCCC
Confidence 8999999999999998866779999999998654 6666666552 222222 222 33555678888988743 2
Q ss_pred --cchHHHhhcC------CCCcccEEEEEeCCCeeEEEEeC
Q 046627 482 --DCSLILKSMT------QREVYPALVLFPAERKNAISFKG 514 (767)
Q Consensus 482 --D~~~~L~~~~------~I~gyPTi~Lf~aggK~~i~y~G 514 (767)
.+...|++.- .|..==+=+|.+++|+...+|.-
T Consensus 114 ~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~p 154 (171)
T KOG1651|consen 114 ADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSP 154 (171)
T ss_pred CchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCC
Confidence 2222232221 12222234566777776666643
No 315
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=35.56 E-value=1.2e+02 Score=32.60 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=18.8
Q ss_pred CCCcEEEEEEcCcChhhHHHH
Q 046627 410 WNEDVVVLFSSSWCGFCQRME 430 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~ 430 (767)
.+|+.+++.-+-||++|-..+
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~s 77 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAES 77 (249)
T ss_pred CCeeEEEEEecccCccchhhH
Confidence 489999999999999998765
No 316
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=35.05 E-value=62 Score=26.74 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=16.9
Q ss_pred EEEEcCcChhhHHHHHHHHHH
Q 046627 416 VLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 416 V~FyApWCg~Ck~~~P~leeL 436 (767)
..|+.++|++|++..-.+++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~ 22 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL 22 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc
Confidence 468899999999887776665
No 317
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=34.98 E-value=1.7e+02 Score=27.69 Aligned_cols=84 Identities=10% Similarity=0.098 Sum_probs=51.7
Q ss_pred cEEEEeecCCcChhhh---cccCCchhhhhcCCc--e--EEEEeCC-hhhh-h----hhcCCCCCcEEEEEcCCCC--ce
Q 046627 262 TTAKDVKVGEKSSSQI---SMSGDPQLEFQGFRG--S--FFFNDGN-YRLL-G----ALTGGSTIPSLAIVDPISN--QH 326 (767)
Q Consensus 262 p~~~~f~~~~e~s~~~---e~l~~~~~~A~~fkg--k--~~fvD~~-~~~l-~----~~~~~~~~P~l~I~d~~~~--~k 326 (767)
..+...|.++++.+-+ +.+ +++|+.++. + |+++|-+ ..++ . .|+..-.-|++.+++.... .=
T Consensus 21 g~~IvAFaee~dpdG~eFl~il---k~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW 97 (120)
T cd03074 21 GIHIVAFAEEEDPDGYEFLEIL---KEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVW 97 (120)
T ss_pred CceEEEEeccCCccHHHHHHHH---HHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEeccccccee
Confidence 4455555544444333 666 999988874 2 6667754 3333 2 2322223599999998654 34
Q ss_pred eecCCc-cCCCHHHHHHHHHHHh
Q 046627 327 YVASKE-ATFNYSSMADFLHGFL 348 (767)
Q Consensus 327 Y~~~~~-~~~t~e~L~~Fi~~~l 348 (767)
|.+.+. ..-+.+.|..|+++++
T Consensus 98 ~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 98 MEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred EecccccccCcHHHHHHHHHhhC
Confidence 556544 3478999999999864
No 318
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=34.51 E-value=43 Score=28.12 Aligned_cols=22 Identities=18% Similarity=0.508 Sum_probs=17.5
Q ss_pred EEEEEcCcChhhHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeL 436 (767)
+..|+.++|++|++.+-.+.+.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~ 23 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH 23 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC
Confidence 4568889999999988666554
No 319
>PRK12559 transcriptional regulator Spx; Provisional
Probab=34.25 E-value=39 Score=32.47 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=17.5
Q ss_pred EEEEEcCcChhhHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeL 436 (767)
+..|..|+|+.|++....+++-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4578899999999987666553
No 320
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=34.19 E-value=1e+02 Score=26.54 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=17.7
Q ss_pred hhhhhhhcCCCCCcEEEEEcCCCCceee
Q 046627 301 YRLLGALTGGSTIPSLAIVDPISNQHYV 328 (767)
Q Consensus 301 ~~~l~~~~~~~~~P~l~I~d~~~~~kY~ 328 (767)
..+.+.| +...+|+++++|++....|.
T Consensus 87 ~~~~~~~-~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 87 GELAKAY-GVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred chHHHhc-CcCccceEEEECCCCcEEEE
Confidence 4444555 45689999999977554443
No 321
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=33.35 E-value=90 Score=29.00 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.0
Q ss_pred CCCCCcEEEEEcCCCC
Q 046627 309 GGSTIPSLAIVDPISN 324 (767)
Q Consensus 309 ~~~~~P~l~I~d~~~~ 324 (767)
+..++|+++++++++.
T Consensus 96 ~v~~~P~~~lid~~G~ 111 (131)
T cd03009 96 KIEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCCEEEEECCCCC
Confidence 5678999999997653
No 322
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=33.04 E-value=1.5e+02 Score=26.93 Aligned_cols=73 Identities=11% Similarity=0.073 Sum_probs=46.4
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
+...|+.|..+- ..|..+...+++++..-. +. .+-. .+.
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd-kI---------------------------~~~~-----~~~------- 57 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASLSD-KI---------------------------TLEE-----DND------- 57 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHhCC-ce---------------------------EEEE-----ecC-------
Confidence 445566676655 888888888888876432 11 1101 110
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHH
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADVIKFIA 526 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~ 526 (767)
. ...|++.+...+...-++|.|-..=.++..||.
T Consensus 58 -~-~~~P~~~i~~~~~~~gIrF~GiP~GhEf~Slil 91 (94)
T cd02974 58 -D-ERKPSFSINRPGEDTGIRFAGIPMGHEFTSLVL 91 (94)
T ss_pred -C-CCCCEEEEecCCCcccEEEEecCCchhHHHHHH
Confidence 0 136999998665334589999888888888875
No 323
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=32.99 E-value=1.5e+02 Score=29.73 Aligned_cols=52 Identities=17% Similarity=0.120 Sum_probs=37.8
Q ss_pred EEeCChhhhhhhcCCCCCcEEEEEcCCCCceeecCCccCCCHHHHHHHHHHHhcC
Q 046627 296 FNDGNYRLLGALTGGSTIPSLAIVDPISNQHYVASKEATFNYSSMADFLHGFLNG 350 (767)
Q Consensus 296 fvD~~~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~l~G 350 (767)
+.|.+..+...| +..++|+.+++|++....|.+. +.++.+.|++.++..+..
T Consensus 127 ~~D~~~~~~~~~-gv~~~P~t~vid~~G~i~~~~~--G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 127 LFDGDGMLGLDL-GVYGAPETFLIDGNGIIRYRHA--GDLNPRVWESEIKPLWEK 178 (185)
T ss_pred EEcCCccHHHhc-CCCcCCeEEEECCCceEEEEEe--cCCCHHHHHHHHHHHHHH
Confidence 346555555555 5678999999998765566654 368899999999988754
No 324
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=32.95 E-value=43 Score=31.11 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=17.5
Q ss_pred EEEEEcCcChhhHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeL 436 (767)
+..|+.++|+.|++....+++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~ 23 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH 23 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 3468889999999988777653
No 325
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=32.85 E-value=44 Score=33.12 Aligned_cols=28 Identities=21% Similarity=0.572 Sum_probs=25.3
Q ss_pred EEEEEcCcChhhHHHHHHHHHHHHHHcc
Q 046627 415 VVLFSSSWCGFCQRMELVVREVFRAVKG 442 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeLak~fk~ 442 (767)
+..|+-+.|++|-...+.++++.+.+..
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 6789999999999999999999999843
No 326
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=31.56 E-value=34 Score=28.30 Aligned_cols=20 Identities=20% Similarity=0.577 Sum_probs=16.1
Q ss_pred EEEcCcChhhHHHHHHHHHH
Q 046627 417 LFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 417 ~FyApWCg~Ck~~~P~leeL 436 (767)
.|+.+||++|++.+-.+...
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~ 22 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK 22 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc
Confidence 57788999999988776554
No 327
>PF13728 TraF: F plasmid transfer operon protein
Probab=31.44 E-value=1.5e+02 Score=30.88 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=38.7
Q ss_pred hhhhhcCCceEEEE--eCC-----------hhhhhhhcCCCCCcEEEEEcCCCCceeecCCccCCCHHHHHH
Q 046627 284 QLEFQGFRGSFFFN--DGN-----------YRLLGALTGGSTIPSLAIVDPISNQHYVASKEATFNYSSMAD 342 (767)
Q Consensus 284 ~~~A~~fkgk~~fv--D~~-----------~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~ 342 (767)
+..+++|.=.++.| |+. ..+++.| ++...|+++++++.++..+..- .+-++.+.|.+
T Consensus 143 ~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l-~v~~~Pal~Lv~~~~~~~~pv~-~G~~s~~~L~~ 212 (215)
T PF13728_consen 143 QQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRL-GVKVTPALFLVNPNTKKWYPVS-QGFMSLDELED 212 (215)
T ss_pred HHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHc-CCCcCCEEEEEECCCCeEEEEe-eecCCHHHHHH
Confidence 77788887777776 541 3455555 5678999999999886555543 23566666643
No 328
>PHA03075 glutaredoxin-like protein; Provisional
Probab=31.19 E-value=43 Score=31.81 Aligned_cols=30 Identities=17% Similarity=0.533 Sum_probs=25.4
Q ss_pred CcEEEEEEcCcChhhHHHHHHHHHHHHHHc
Q 046627 412 EDVVVLFSSSWCGFCQRMELVVREVFRAVK 441 (767)
Q Consensus 412 K~VLV~FyApWCg~Ck~~~P~leeLak~fk 441 (767)
|.+||.|--|.|+-|......+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 578999999999999999888877766663
No 329
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=30.08 E-value=76 Score=33.04 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=25.6
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVK 441 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk 441 (767)
.+.+++.|+-.-|++|++..|.+.+.+....
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 4788999999999999999888888555443
No 330
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=29.70 E-value=2.5e+02 Score=27.16 Aligned_cols=44 Identities=14% Similarity=0.304 Sum_probs=30.9
Q ss_pred hhhhhhhcCCCCCcEEEEEcCCCCceeecCCccCCCHHHHHHHHHHH
Q 046627 301 YRLLGALTGGSTIPSLAIVDPISNQHYVASKEATFNYSSMADFLHGF 347 (767)
Q Consensus 301 ~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~ 347 (767)
..+.+.| +...+|+++++++++...+.+. +..+.+.+.+++++.
T Consensus 128 ~~~~~~~-~v~~~P~~~lid~~g~i~~~~~--g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 128 RQVIDAY-GVGPLPTTFLIDKDGKVVKVIT--GEMTEEQLEEYLEKI 171 (173)
T ss_pred chHHHHc-CCCCcCeEEEECCCCcEEEEEe--CCCCHHHHHHHHHHh
Confidence 3444545 5678999999998765444443 367889999998863
No 331
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=28.92 E-value=72 Score=28.13 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=22.9
Q ss_pred cccEEEEEeCCCeeEEEE-eCCCCHHHHHHHHHHhC
Q 046627 495 VYPALVLFPAERKNAISF-KGDISVADVIKFIADHG 529 (767)
Q Consensus 495 gyPTi~Lf~aggK~~i~y-~G~~t~e~L~~FI~k~~ 529 (767)
.-|+++||+.+|+...+. ....+.+.+.+||.+++
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 469999999888754333 25689999999999875
No 332
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=28.81 E-value=50 Score=27.19 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=17.0
Q ss_pred EEEEcCcChhhHHHHHHHHHH
Q 046627 416 VLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 416 V~FyApWCg~Ck~~~P~leeL 436 (767)
..|+.++|++|++..-.+++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~ 22 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEK 22 (73)
T ss_pred EEEECCCChhHHHHHHHHHHc
Confidence 568899999999988776554
No 333
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=28.49 E-value=82 Score=29.40 Aligned_cols=67 Identities=7% Similarity=0.003 Sum_probs=36.7
Q ss_pred HhhcCCccEEEEeecCC-cChhhh-cccCCchhhhh--cCCceEEEEeC--Ch-hhhhhhcCC-CCCcEEEEEcCCCC
Q 046627 255 YYLGHDLTTAKDVKVGE-KSSSQI-SMSGDPQLEFQ--GFRGSFFFNDG--NY-RLLGALTGG-STIPSLAIVDPISN 324 (767)
Q Consensus 255 ~~~~~~~p~~~~f~~~~-e~s~~~-e~l~~~~~~A~--~fkgk~~fvD~--~~-~~l~~~~~~-~~~P~l~I~d~~~~ 324 (767)
.-...++|+++.|+++| .....+ ..+ .+.+. ....+|+.++. +. .....|... ..+|+++++++++.
T Consensus 14 ~A~~~~kpVlV~F~a~WC~~C~~~~~~~---~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 14 EAKDSGKPLMLLIHKTWCGACKALKPKF---AESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred HHHHcCCcEEEEEeCCcCHHHHHHHHHH---hhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC
Confidence 44567889999998766 223333 223 22222 23445666643 32 333445322 23999999997644
No 334
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=27.92 E-value=1.6e+02 Score=31.48 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=56.6
Q ss_pred CCCcEEEEEEcCcChhhHHHHHHHHHHHHHHcc----CceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchH
Q 046627 410 WNEDVVVLFSSSWCGFCQRMELVVREVFRAVKG----YMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSL 485 (767)
Q Consensus 410 ~~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~----~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~ 485 (767)
-++++||-+-..+|.+|..-+..++.|..++.. ++.|+.||-...........++++--.-+.++.-|...+|+..
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~q~dvW~ 104 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDENQPDVWE 104 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCccccCHHH
Confidence 488999999999999999999999999888853 3456666543322222112232221112345555656667665
Q ss_pred HHhhcCCCCcccEEEEEeCCCee
Q 046627 486 ILKSMTQREVYPALVLFPAERKN 508 (767)
Q Consensus 486 ~L~~~~~I~gyPTi~Lf~aggK~ 508 (767)
.|.. .. =-+++|++=|+.
T Consensus 105 ~L~G----~k-dD~~iyDRCGrL 122 (238)
T PF04592_consen 105 LLNG----SK-DDFLIYDRCGRL 122 (238)
T ss_pred HhCC----Cc-CcEEEEeccCcE
Confidence 4321 11 136778777764
No 335
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=27.12 E-value=84 Score=30.99 Aligned_cols=28 Identities=14% Similarity=0.282 Sum_probs=25.4
Q ss_pred EEEEEEcCcChhhHHHHHHHHHHHHHHc
Q 046627 414 VVVLFSSSWCGFCQRMELVVREVFRAVK 441 (767)
Q Consensus 414 VLV~FyApWCg~Ck~~~P~leeLak~fk 441 (767)
.+..||-.-||+|-...+.++++.+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~ 28 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYP 28 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 3778999999999999999999999993
No 336
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=26.95 E-value=96 Score=30.58 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=27.4
Q ss_pred hhcCCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHH
Q 046627 488 KSMTQREVYPALVLFPAERKNAISFKGDISVADVIKFIA 526 (767)
Q Consensus 488 ~~~~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~ 526 (767)
...++|.|+||+++ +++ ..+.|....+.|.+.|+
T Consensus 160 a~~~gv~GvP~~vv---~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 160 ARQLGVFGVPTFVV---NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHTTCSSSSEEEE---TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHcCCcccCEEEE---CCE--EEEECCCCHHHHHHHhC
Confidence 45689999999999 444 66789999999988774
No 337
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=26.76 E-value=49 Score=28.45 Aligned_cols=65 Identities=9% Similarity=-0.024 Sum_probs=33.9
Q ss_pred HhhcCCccEEEEeecCCc-Chhhh-cccCCchhhhhcCCceEEE--EeCC--hhhhhhhcCCCCCcEEEEEcC
Q 046627 255 YYLGHDLTTAKDVKVGEK-SSSQI-SMSGDPQLEFQGFRGSFFF--NDGN--YRLLGALTGGSTIPSLAIVDP 321 (767)
Q Consensus 255 ~~~~~~~p~~~~f~~~~e-~s~~~-e~l~~~~~~A~~fkgk~~f--vD~~--~~~l~~~~~~~~~P~l~I~d~ 321 (767)
.-...++|+.+.|...+= ....+ +.+-.-.++.+.+..+|++ +|.+ ........ .++|+++|++|
T Consensus 12 ~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~--~~~P~~~~ldp 82 (82)
T PF13899_consen 12 EAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR--QGYPTFFFLDP 82 (82)
T ss_dssp HHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH--CSSSEEEEEET
T ss_pred HHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC--ccCCEEEEeCC
Confidence 345568899999976552 22222 2221112333334455555 4754 22222222 45999999985
No 338
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=26.34 E-value=1.6e+02 Score=34.49 Aligned_cols=83 Identities=8% Similarity=0.112 Sum_probs=50.4
Q ss_pred CCcEEEEEEcCcChhhHHHHHHHHHHHHHHccCceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccchHHHhhc
Q 046627 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDCSLILKSM 490 (767)
Q Consensus 411 ~K~VLV~FyApWCg~Ck~~~P~leeLak~fk~~~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~~~~L~~~ 490 (767)
.++|-+.++..-|..|..+...++++++.-. +. .+-. .+.
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-~i---------------------------~~~~-----~~~------- 57 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASLSD-KI---------------------------TVEE-----DSL------- 57 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHhCC-ce---------------------------EEEE-----ccC-------
Confidence 4455454555579999999999988877542 21 1111 110
Q ss_pred CCCCcccEEEEEeCCCeeEEEEeCCCCHHHHHHHHHH---hCCCCCcc
Q 046627 491 TQREVYPALVLFPAERKNAISFKGDISVADVIKFIAD---HGNNSHDL 535 (767)
Q Consensus 491 ~~I~gyPTi~Lf~aggK~~i~y~G~~t~e~L~~FI~k---~~~~~~~l 535 (767)
. ...|++.+...+...-++|.|-..-.++..||.. .++....|
T Consensus 58 -~-~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l 103 (517)
T PRK15317 58 -D-VRKPSFSITRPGEDTGVRFAGIPMGHEFTSLVLALLQVGGHPPKL 103 (517)
T ss_pred -C-CCCCEEEEEcCCccceEEEEecCccHHHHHHHHHHHHhcCCCCCC
Confidence 1 2379999985444446889887777777777654 34444444
No 339
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=26.05 E-value=52 Score=27.94 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=17.2
Q ss_pred EEEEEcCcChhhHHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVREV 436 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~leeL 436 (767)
+..|+.++|++|.+.+-.+.+.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~ 23 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL 23 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc
Confidence 3567788999999988777665
No 340
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=25.64 E-value=2.7e+02 Score=30.03 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=42.9
Q ss_pred hhhhhcCCceEEEE--eCC-----------hhhhhhhcCCCCCcEEEEEcCCCCceeecCCccCCCHHHHHHHHHHHhc
Q 046627 284 QLEFQGFRGSFFFN--DGN-----------YRLLGALTGGSTIPSLAIVDPISNQHYVASKEATFNYSSMADFLHGFLN 349 (767)
Q Consensus 284 ~~~A~~fkgk~~fv--D~~-----------~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~l~ 349 (767)
+..|++|.-.++.| |+. ..+++.| +...+|+++++++.++..+..- .+-++.+.|.+=+....+
T Consensus 173 ~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~v~~~Pal~Lv~~~t~~~~pv~-~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 173 QAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHL-GVKYFPALYLVNPKSQKMSPLA-YGFISQDELKERILNVLT 249 (256)
T ss_pred HHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhc-CCccCceEEEEECCCCcEEEEe-eccCCHHHHHHHHHHHHh
Confidence 66688888777766 653 2244455 5678999999999887666553 346787777665555443
No 341
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.53 E-value=84 Score=33.84 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=41.5
Q ss_pred hhhhhcCCceEEE-EeCC--hhhhhhhcCCCCCcEEEEEcCCCCceeecCCccCCCHHHHHHHHHHHhcC
Q 046627 284 QLEFQGFRGSFFF-NDGN--YRLLGALTGGSTIPSLAIVDPISNQHYVASKEATFNYSSMADFLHGFLNG 350 (767)
Q Consensus 284 ~~~A~~fkgk~~f-vD~~--~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~l~G 350 (767)
..+|.+|++-++. ||-+ ...+.. +++...||+++|... .+... -...+...|+.-|..|..-
T Consensus 44 s~lankYp~aVFlkVdVd~c~~taa~-~gV~amPTFiff~ng--~kid~--~qGAd~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 44 SDLANKYPGAVFLKVDVDECRGTAAT-NGVNAMPTFIFFRNG--VKIDQ--IQGADASGLEEKVAKYAST 108 (288)
T ss_pred HHhhhhCcccEEEEEeHHHhhchhhh-cCcccCceEEEEecC--eEeee--ecCCCHHHHHHHHHHHhcc
Confidence 5568999886655 5654 223333 368889999999844 33322 1257888999999998653
No 342
>PF11097 DUF2883: Protein of unknown function (DUF2883); InterPro: IPR020112 This group of proteins currently have no known function and are found primarily in the T4-like bacteriophages.
Probab=25.35 E-value=55 Score=27.86 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=15.3
Q ss_pred EEEeecccCChhhHHHHH
Q 046627 730 WFFLGFSGWGWDQLFHEI 747 (767)
Q Consensus 730 r~flGYaGW~~GQLe~Ei 747 (767)
-+++||-||.+.-||+=|
T Consensus 6 ~VYLg~pg~p~nKle~LM 23 (75)
T PF11097_consen 6 DVYLGYPGLPPNKLEGLM 23 (75)
T ss_pred eEEEeCCCCChHHHHHHH
Confidence 578999999999998643
No 343
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.23 E-value=62 Score=28.57 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=18.3
Q ss_pred EEEEcCcChhhHHHHHHHHHHHH
Q 046627 416 VLFSSSWCGFCQRMELVVREVFR 438 (767)
Q Consensus 416 V~FyApWCg~Ck~~~P~leeLak 438 (767)
+.|+|.-||.|......++++.-
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v 27 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNV 27 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCC
Confidence 67999999999887777766533
No 344
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=24.56 E-value=71 Score=30.73 Aligned_cols=21 Identities=14% Similarity=0.475 Sum_probs=16.4
Q ss_pred EEEEEcCcChhhHHHHHHHHH
Q 046627 415 VVLFSSSWCGFCQRMELVVRE 435 (767)
Q Consensus 415 LV~FyApWCg~Ck~~~P~lee 435 (767)
+..|+.|+|+.|++....+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 346888999999997766654
No 345
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=24.46 E-value=1.3e+02 Score=27.36 Aligned_cols=51 Identities=22% Similarity=0.185 Sum_probs=31.4
Q ss_pred hhcCCceEEEE-eCChhhhhhhcCCCCCcEEEEEcCCCCceeecCCccCCCHHHHH
Q 046627 287 FQGFRGSFFFN-DGNYRLLGALTGGSTIPSLAIVDPISNQHYVASKEATFNYSSMA 341 (767)
Q Consensus 287 A~~fkgk~~fv-D~~~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~ 341 (767)
++++.-.+-++ |.+..+.+.| +..++|++++++.++ ..|.+.+ -.+.+.|.
T Consensus 68 ~~~~~~~~~~~~d~~~~~~~~~-~i~~~P~~~vid~~g-i~~~~~g--~~~~~~~~ 119 (123)
T cd03011 68 MQKKGYGFPVINDPDGVISARW-GVSVTPAIVIVDPGG-IVFVTTG--VTSEWGLR 119 (123)
T ss_pred HHHcCCCccEEECCCcHHHHhC-CCCcccEEEEEcCCC-eEEEEec--cCCHHHHH
Confidence 44444344333 5455666666 567899999999765 6666543 45666654
No 346
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=24.40 E-value=1.2e+02 Score=28.51 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=29.7
Q ss_pred hhhhhcCCceEEE-EeCChhhhhhhcCCC---------CCcEEEEEcCCCCceeecC
Q 046627 284 QLEFQGFRGSFFF-NDGNYRLLGALTGGS---------TIPSLAIVDPISNQHYVAS 330 (767)
Q Consensus 284 ~~~A~~fkgk~~f-vD~~~~~l~~~~~~~---------~~P~l~I~d~~~~~kY~~~ 330 (767)
++.++++...+.+ .|.+..+.+.|+ .. .+|++++++.+....|...
T Consensus 77 ~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~~~~~~~~~~P~~~lId~~G~V~~~~~ 132 (146)
T PF08534_consen 77 REFLKKYGINFPVLSDPDGALAKALG-VTIMEDPGNGFGIPTTFLIDKDGKVVYRHV 132 (146)
T ss_dssp HHHHHHTTTTSEEEEETTSHHHHHTT-CEEECCTTTTSSSSEEEEEETTSBEEEEEE
T ss_pred HHHHHhhCCCceEEechHHHHHHHhC-CccccccccCCeecEEEEEECCCEEEEEEe
Confidence 3334555544444 477777777763 33 8999999998766566543
No 347
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=24.31 E-value=2.7e+02 Score=25.55 Aligned_cols=86 Identities=15% Similarity=0.197 Sum_probs=47.9
Q ss_pred HHhhcCC-ccEEEEeecCCcChhhhcccCCchhhhhcCCceEEEEeC-ChhhhhhhcCCCCCcEEEEEcCCCC------c
Q 046627 254 QYYLGHD-LTTAKDVKVGEKSSSQISMSGDPQLEFQGFRGSFFFNDG-NYRLLGALTGGSTIPSLAIVDPISN------Q 325 (767)
Q Consensus 254 ~~~~~~~-~p~~~~f~~~~e~s~~~e~l~~~~~~A~~fkgk~~fvD~-~~~~l~~~~~~~~~P~l~I~d~~~~------~ 325 (767)
..+.... ...++-|+. ..+.+.++.+ .++|..+|..+.|.-. +..++..+. ...|.++++.|..= .
T Consensus 12 e~f~~~~~~~~VVG~F~-~~~~~~~~~F---~~vA~~~Rdd~~F~~t~~~~~~~~~~--~~~~~vvl~rp~~~~~k~e~~ 85 (107)
T cd03068 12 QEFLRDGDDVIIIGVFS-GEEDPAYQLY---QDAANSLREDYKFHHTFDSEIFKSLK--VSPGQLVVFQPEKFQSKYEPK 85 (107)
T ss_pred HHHHhcCCCEEEEEEEC-CCCCHHHHHH---HHHHHhcccCCEEEEEChHHHHHhcC--CCCCceEEECcHHHhhhcCcc
Confidence 3443333 333334443 2233445555 8899999998888633 345555552 24678888866421 2
Q ss_pred eeecCCccCCCHHH-HHHHHHH
Q 046627 326 HYVASKEATFNYSS-MADFLHG 346 (767)
Q Consensus 326 kY~~~~~~~~t~e~-L~~Fi~~ 346 (767)
...|.+. ..+.+. |..||+.
T Consensus 86 ~~~~~~~-~~~~~~~~~~f~~~ 106 (107)
T cd03068 86 SHVLNKK-DSTSEDELKDFFKE 106 (107)
T ss_pred eeeeecc-ccchHHHHHHHHhc
Confidence 2334321 145555 9999864
No 348
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=23.78 E-value=1.7e+02 Score=27.26 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=12.2
Q ss_pred CCCCCcEEEEEcCCC
Q 046627 309 GGSTIPSLAIVDPIS 323 (767)
Q Consensus 309 ~~~~~P~l~I~d~~~ 323 (767)
+..++|+++|++.++
T Consensus 96 ~v~~iPt~~lid~~G 110 (132)
T cd02964 96 KVEGIPTLVVLKPDG 110 (132)
T ss_pred CCCCCCEEEEECCCC
Confidence 577899999999654
No 349
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=23.08 E-value=1.6e+02 Score=27.23 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=27.7
Q ss_pred hhhhhcCCceEEE-EeCChhhhhhhcCCCCCcEEEEEcCCCCceeecC
Q 046627 284 QLEFQGFRGSFFF-NDGNYRLLGALTGGSTIPSLAIVDPISNQHYVAS 330 (767)
Q Consensus 284 ~~~A~~fkgk~~f-vD~~~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~ 330 (767)
++.++++.-.+-+ .|.+..+.+.| +...+|+.+++|.+....|.+.
T Consensus 77 ~~~~~~~~~~~p~~~D~~~~~~~~~-~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 77 KSAVLRYGITYPVANDNDYATWRAY-GNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred HHHHHHcCCCCCEEECCchHHHHHh-CCCcCCeEEEECCCCcEEEEEe
Confidence 3334544433333 35555666666 4678999999997765555543
No 350
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=22.53 E-value=5.6e+02 Score=24.91 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=44.3
Q ss_pred hhhhhcCCceEEE-EeCChhhhhhhcCCCCCcEEEEEcCCCCceeecC--C-----ccCCCHHHHHHHHHHHhcCCc
Q 046627 284 QLEFQGFRGSFFF-NDGNYRLLGALTGGSTIPSLAIVDPISNQHYVAS--K-----EATFNYSSMADFLHGFLNGTL 352 (767)
Q Consensus 284 ~~~A~~fkgk~~f-vD~~~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~--~-----~~~~t~e~L~~Fi~~~l~Gkl 352 (767)
+..++++.-.+.+ .|.+..+.+.| +....|.++|+|++....|... + ....+.+.|.+-|...++|.-
T Consensus 81 ~~~~~~~~~~~~~l~D~~~~~~~~~-~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 81 KAKAKEHGYPFPYLLDETQEVAKAY-GAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HHHHHHCCCCceEEECCchHHHHHc-CCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 3334555444444 36666666666 4567899999998766555432 1 123577899999999998853
No 351
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=21.94 E-value=2.9e+02 Score=30.07 Aligned_cols=115 Identities=11% Similarity=0.187 Sum_probs=62.9
Q ss_pred CCcEEEEEEcCcChh-hHHHHHHHHHHHHHHccC------ceeeeccccCCcccchhhHHhhccccCcEEEEecCCcccc
Q 046627 411 NEDVVVLFSSSWCGF-CQRMELVVREVFRAVKGY------MKSLKNGYKNGQRDLNGEYLKNINFKLPRIYLMDCTLNDC 483 (767)
Q Consensus 411 ~K~VLV~FyApWCg~-Ck~~~P~leeLak~fk~~------~~iI~V~~d~~~~~~~~~~v~~~~~~~~vIa~ID~t~ND~ 483 (767)
+|.+|++|-=+.||- |=.+..-+-.+-+.+... ..||.|+-..+......+++++.. |.+.-+-.+..++
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~---pkllGLTGT~eqv 215 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFH---PKLLGLTGTTEQV 215 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcC---hhhhcccCCHHHH
Confidence 899999999999986 765544444444433322 135555554444444444443311 3333333444433
Q ss_pred hHHHhhcCCCCc---cc----------EEE--EEeCCCeeEEEEeC-CCCHHHHHHHHHHhCC
Q 046627 484 SLILKSMTQREV---YP----------ALV--LFPAERKNAISFKG-DISVADVIKFIADHGN 530 (767)
Q Consensus 484 ~~~L~~~~~I~g---yP----------Ti~--Lf~aggK~~i~y~G-~~t~e~L~~FI~k~~~ 530 (767)
.. +|+.|.|-- .+ +++ |++.+++ .+.|.| .++.+++.+-|.+|..
T Consensus 216 k~-vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~-Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 216 KQ-VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGE-FVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred HH-HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcc-eehhhcccCCHHHHHHHHHHHHH
Confidence 32 455554421 11 233 4455554 556667 6789999998888754
No 352
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=21.76 E-value=1.1e+02 Score=36.57 Aligned_cols=90 Identities=19% Similarity=0.094 Sum_probs=54.6
Q ss_pred cccceechHHhhcCCccEEEEeecCCcChhhhcccCCchhhhhcCCceEEE--EeC----ChhhhhhhcCCCCCcEEEEE
Q 046627 246 QLIPEASDQYYLGHDLTTAKDVKVGEKSSSQISMSGDPQLEFQGFRGSFFF--NDG----NYRLLGALTGGSTIPSLAIV 319 (767)
Q Consensus 246 ~lPlVetf~~~~~~~~p~~~~f~~~~e~s~~~e~l~~~~~~A~~fkgk~~f--vD~----~~~~l~~~~~~~~~P~l~I~ 319 (767)
.=.+||.|..|++++.--+..|. +| .+...+++.-+.+ ||. |..+.+.| +++.+|++.++
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk----------~~---A~dl~~W~~vv~vaaVdCA~~~N~~lCRef-~V~~~Ptlryf 123 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFK----------KF---AKDLEKWRPVVRVAAVDCADEENVKLCREF-SVSGYPTLRYF 123 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHH----------HH---HHHHhcccceeEEEEeeccchhhhhhHhhc-CCCCCceeeec
Confidence 45778999999999977655552 12 2223555555444 464 56777888 68899999999
Q ss_pred cCCCCc-eeecCCccCCCHHHHHHHHHHHhc
Q 046627 320 DPISNQ-HYVASKEATFNYSSMADFLHGFLN 349 (767)
Q Consensus 320 d~~~~~-kY~~~~~~~~t~e~L~~Fi~~~l~ 349 (767)
.++... .+-..-.+......+..++..-+.
T Consensus 124 ~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 124 PPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred CCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 987431 211111123345566666655443
No 353
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=21.34 E-value=3.5e+02 Score=29.06 Aligned_cols=65 Identities=20% Similarity=0.102 Sum_probs=43.5
Q ss_pred hhhhhcCCceEEEE--eCC-----------hhhhhhhcCCCCCcEEEEEcCCCCceeecCCccCCCHHHHHHHHHHHhcC
Q 046627 284 QLEFQGFRGSFFFN--DGN-----------YRLLGALTGGSTIPSLAIVDPISNQHYVASKEATFNYSSMADFLHGFLNG 350 (767)
Q Consensus 284 ~~~A~~fkgk~~fv--D~~-----------~~~l~~~~~~~~~P~l~I~d~~~~~kY~~~~~~~~t~e~L~~Fi~~~l~G 350 (767)
+..+++|.-.++-| ||. ...++.+ ++..+|+++++++.++..+..- .+-++.+.|.+=+....++
T Consensus 166 ~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~v~~~PAl~Lv~~~t~~~~pv~-~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 166 NDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRL-GVKYFPALMLVDPKSGSVRPLS-YGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred HHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhc-CCcccceEEEEECCCCcEEEEe-eccCCHHHHHHHHHHHHhc
Confidence 66678877666655 651 1233344 5678999999999887666653 3467888887766666554
No 354
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=21.14 E-value=1.4e+02 Score=29.96 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=43.6
Q ss_pred echHHhhcCCccEEEEeecCCcChhhh-cccCCchhhhhcCCceEEEE---eCC-hhhhhhhcCCCCCcEEEEEcCCC
Q 046627 251 ASDQYYLGHDLTTAKDVKVGEKSSSQI-SMSGDPQLEFQGFRGSFFFN---DGN-YRLLGALTGGSTIPSLAIVDPIS 323 (767)
Q Consensus 251 etf~~~~~~~~p~~~~f~~~~e~s~~~-e~l~~~~~~A~~fkgk~~fv---D~~-~~~l~~~~~~~~~P~l~I~d~~~ 323 (767)
..|..+-..+.|..++|++...+.++. +.+ ...-|.=+++ |.. .++.+.| .+.++|+++|++++.
T Consensus 57 ~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~-------~~~~~~W~~iPf~d~~~~~l~~ky-~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 57 DFYEELKDNAAPFEVVFVSSDRDEESLDEYM-------LEHHGDWLAIPFGDDLIQKLSEKY-EVKGIPALVILKPDG 126 (157)
T ss_pred HHHHHHHhcCCceEEEEEecCCCHHHHHHHH-------HhcCCCeEEecCCCHHHHHHHHhc-ccCcCceeEEecCCC
Confidence 667778888888999999866665555 222 4445665555 222 3444545 688999999999864
No 355
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=20.76 E-value=2e+02 Score=27.87 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=35.9
Q ss_pred HHHhhcCCCCcccEEEEEeCCC----------eeEEEEeCCCCHHHHHHHHHHhCCCC
Q 046627 485 LILKSMTQREVYPALVLFPAER----------KNAISFKGDISVADVIKFIADHGNNS 532 (767)
Q Consensus 485 ~~L~~~~~I~gyPTi~Lf~agg----------K~~i~y~G~~t~e~L~~FI~k~~~~~ 532 (767)
..+-.+|+|+.+|++++...+. .......|..+.+.-++.+.+.+...
T Consensus 61 P~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~g~~~ 118 (130)
T TIGR02742 61 PQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQDGDSP 118 (130)
T ss_pred hHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHhCCCc
Confidence 3456689999999999996553 12345579999999999998776443
No 356
>PF14822 Vasohibin: Vasohibin
Probab=20.09 E-value=50 Score=35.10 Aligned_cols=56 Identities=20% Similarity=0.204 Sum_probs=39.5
Q ss_pred CccceEEEEEEeCCCCceeEE-----EeccCCCCCChhhhhhccccc----C--CCCeecCCCcCCC
Q 046627 626 PFENSKILIVKADQSVGFQGL-----IFNKHIGWDSLQELEKGLDFL----K--EAPLSFGGPLIKH 681 (767)
Q Consensus 626 ~F~rSVVLi~eH~~~~Ga~Gl-----ILNrP~~~~~l~~l~~~~~~~----~--~~pv~~GGPV~~~ 681 (767)
...|-|||.+.++..-||+|| .++||+...++.+|+.++... . -.-|.+|.||..+
T Consensus 144 ~~~~HIVL~v~~~~~~GalGlSRr~~Lm~k~l~~~sls~li~~y~~sY~~~~H~l~kvkiGlpV~HD 210 (246)
T PF14822_consen 144 RVFRHIVLGVRCGGKYGALGLSRRSDLMYKPLEFRSLSDLIFDYKESYEKYGHTLKKVKIGLPVPHD 210 (246)
T ss_pred cEEEEEEEEEEECCeecccccccchhhcccchhhHHHHHHHHHHHHHHHHhCeEEEEEecccccCCC
Confidence 345788888888876799996 457788776788887765431 0 1357789999753
Done!