BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046631
(813 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 7/135 (5%)
Query: 193 AWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLL 252
AW + + Y K Y EA+ ++ L + R S ++ N+ A GDY A Y
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 253 VKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLE---RNTEVWNTMIGGYVQNNH 309
++L + +A Y + G +D A + + LE R+ E W + Y +
Sbjct: 62 LELDPRSAEAWYNLGNA---YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 118
Query: 310 PVEAIELFVQVLELD 324
EAIE + + LELD
Sbjct: 119 YDEAIEYYQKALELD 133
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 599 LSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQ--IFDLMQQEYKIQPSTEHYCCV 656
+ +F +G G++P + T VA+L C+ G V+ L ++ + + +K +CC
Sbjct: 353 VQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFK--ACFRKFCC- 409
Query: 657 ADMLGR 662
A LGR
Sbjct: 410 ASALGR 415
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 225 STISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARK 284
S ++ N+ A GDY A Y ++L + +A Y + G +D A +
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA---YYKQGDYDEAIE 64
Query: 285 IFDNCLE---RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELD 324
+ LE N E W + Y + EAIE + + LELD
Sbjct: 65 YYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107
>pdb|1BRL|A Chain A, Three-Dimensional Structure Of Bacterial Luciferase From
Vibrio Harveyi At 2.4 Angstroms Resolution
pdb|1LUC|A Chain A, Bacterial Luciferase
pdb|1BRL|C Chain C, Three-Dimensional Structure Of Bacterial Luciferase From
Vibrio Harveyi At 2.4 Angstroms Resolution
pdb|3FGC|A Chain A, Crystal Structure Of The Bacterial Luciferase:flavin
Complex Reveals The Basis Of Intersubunit Communication
pdb|3FGC|C Chain C, Crystal Structure Of The Bacterial Luciferase:flavin
Complex Reveals The Basis Of Intersubunit Communication
Length = 355
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 488 YTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIE 530
+T+ GLL +VA +L T NV T A VLP +P+ E
Sbjct: 46 FTEFGLLGNPYVAAAHLLGATETLNVGTAAIVLPTAHPVRQAE 88
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 273 YAELGCFDFARKIFDNCLE---RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELD 324
Y + G +D A + + LE R+ E W + Y + EAIE + + LELD
Sbjct: 13 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 273 YAELGCFDFARKIFDNCLE---RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELD 324
Y + G +D A + + LE N E W + Y + EAIE + + LELD
Sbjct: 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
>pdb|4ELJ|A Chain A, Crystal Structure Of The Inactive Retinoblastoma Protein
Phosphorylated At T373
Length = 656
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 284 KIFDNCLERNTEVW------NTMIGGYVQNNHPVEAIELFVQVLELDEIVF 328
KI D+ ER W + ++GGY+Q + I +F+ ++LDE+ F
Sbjct: 16 KIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSF 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,389,384
Number of Sequences: 62578
Number of extensions: 915270
Number of successful extensions: 2267
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2243
Number of HSP's gapped (non-prelim): 33
length of query: 813
length of database: 14,973,337
effective HSP length: 107
effective length of query: 706
effective length of database: 8,277,491
effective search space: 5843908646
effective search space used: 5843908646
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)