Query 046631
Match_columns 813
No_of_seqs 708 out of 4362
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 02:50:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4E-104 9E-109 916.6 83.8 706 66-802 47-774 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 2.2E-80 4.7E-85 718.7 64.1 595 26-651 107-727 (857)
3 PLN03081 pentatricopeptide (PP 100.0 3.6E-77 7.7E-82 675.0 65.2 525 188-801 84-610 (697)
4 PLN03218 maturation of RBCL 1; 100.0 1.7E-66 3.6E-71 587.5 61.5 536 103-682 366-912 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 9.1E-67 2E-71 590.2 56.9 476 66-648 83-561 (697)
6 PLN03218 maturation of RBCL 1; 100.0 3.6E-64 7.9E-69 568.5 55.5 511 53-651 384-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-36 2.8E-41 363.5 74.1 670 39-746 192-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 8E-36 1.7E-40 356.6 75.2 659 41-750 160-868 (899)
9 PRK11447 cellulose synthase su 100.0 6.2E-26 1.3E-30 270.1 68.2 628 47-747 35-739 (1157)
10 PRK11447 cellulose synthase su 100.0 6.3E-25 1.4E-29 261.5 65.5 609 76-749 34-701 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 5E-23 1.1E-27 233.0 63.5 628 53-750 58-742 (987)
12 PRK09782 bacteriophage N4 rece 99.9 1.3E-20 2.8E-25 213.6 63.3 610 72-749 44-707 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 4.3E-22 9.3E-27 198.5 36.2 359 375-745 149-516 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 9.1E-22 2E-26 196.2 33.5 365 375-751 115-488 (966)
15 KOG2002 TPR-containing nuclear 99.9 1E-16 2.2E-21 169.5 51.6 544 176-750 146-747 (1018)
16 PRK11788 tetratricopeptide rep 99.9 1.6E-19 3.5E-24 192.2 31.5 293 454-755 44-354 (389)
17 KOG2002 TPR-containing nuclear 99.9 2.3E-16 4.9E-21 166.9 50.6 577 123-750 146-800 (1018)
18 TIGR00990 3a0801s09 mitochondr 99.9 3E-17 6.4E-22 183.9 45.7 424 296-748 129-571 (615)
19 PRK15174 Vi polysaccharide exp 99.8 1.8E-17 3.9E-22 184.6 39.3 330 379-716 45-385 (656)
20 PRK15174 Vi polysaccharide exp 99.8 2.3E-17 5E-22 183.7 38.6 355 386-750 15-383 (656)
21 TIGR00990 3a0801s09 mitochondr 99.8 4E-16 8.7E-21 174.9 45.6 424 194-716 130-575 (615)
22 PRK10049 pgaA outer membrane p 99.8 3.2E-16 6.9E-21 178.7 44.8 400 262-716 14-460 (765)
23 PRK11788 tetratricopeptide rep 99.8 1.2E-17 2.6E-22 177.8 31.2 97 551-650 252-353 (389)
24 PRK10049 pgaA outer membrane p 99.8 5E-16 1.1E-20 177.1 45.6 368 375-749 48-457 (765)
25 KOG0495 HAT repeat protein [RN 99.8 2E-12 4.3E-17 131.2 58.2 618 85-765 266-895 (913)
26 PRK14574 hmsH outer membrane p 99.8 1.2E-14 2.5E-19 162.1 46.7 424 237-716 45-517 (822)
27 COG2956 Predicted N-acetylgluc 99.8 3.2E-16 6.9E-21 145.2 25.6 309 489-811 46-367 (389)
28 KOG4422 Uncharacterized conser 99.8 1.7E-14 3.6E-19 138.7 37.2 368 182-578 198-591 (625)
29 PRK14574 hmsH outer membrane p 99.8 4.5E-14 9.8E-19 157.4 46.4 424 303-749 43-514 (822)
30 KOG2076 RNA polymerase III tra 99.8 7.6E-13 1.7E-17 139.8 51.6 613 83-744 152-891 (895)
31 KOG4422 Uncharacterized conser 99.7 6.2E-13 1.3E-17 128.1 40.1 439 192-676 117-587 (625)
32 KOG4318 Bicoid mRNA stability 99.7 4.3E-14 9.3E-19 148.0 35.0 483 90-640 10-591 (1088)
33 KOG2076 RNA polymerase III tra 99.7 2.2E-12 4.7E-17 136.5 47.2 549 174-729 153-784 (895)
34 KOG0495 HAT repeat protein [RN 99.7 2.4E-11 5.2E-16 123.5 51.6 580 53-724 299-890 (913)
35 KOG2003 TPR repeat-containing 99.7 3.9E-13 8.5E-18 130.1 32.6 480 197-734 207-709 (840)
36 KOG4318 Bicoid mRNA stability 99.6 5.7E-12 1.2E-16 132.4 38.9 630 26-697 11-828 (1088)
37 PF13429 TPR_15: Tetratricopep 99.6 5.2E-15 1.1E-19 148.6 12.1 256 485-747 15-276 (280)
38 KOG2003 TPR repeat-containing 99.6 3.6E-12 7.8E-17 123.6 28.3 434 299-749 206-690 (840)
39 KOG1155 Anaphase-promoting com 99.6 4.1E-11 8.9E-16 117.2 35.5 284 452-746 234-534 (559)
40 PRK10747 putative protoheme IX 99.5 1.1E-11 2.3E-16 130.4 30.6 278 458-747 97-389 (398)
41 KOG1915 Cell cycle control pro 99.5 1.1E-09 2.4E-14 107.5 41.4 498 194-746 76-623 (677)
42 KOG0547 Translocase of outer m 99.5 8.8E-11 1.9E-15 115.7 33.8 214 525-747 338-565 (606)
43 KOG1126 DNA-binding cell divis 99.5 2E-12 4.4E-17 132.5 22.7 277 459-747 333-619 (638)
44 KOG1915 Cell cycle control pro 99.5 9.4E-10 2E-14 108.0 38.3 449 70-586 73-547 (677)
45 PRK10747 putative protoheme IX 99.5 2.4E-11 5.2E-16 127.7 29.8 289 388-713 96-391 (398)
46 KOG1126 DNA-binding cell divis 99.5 3E-12 6.4E-17 131.3 21.4 279 426-716 334-624 (638)
47 KOG0547 Translocase of outer m 99.5 2.9E-10 6.3E-15 112.1 32.1 329 197-541 121-490 (606)
48 TIGR00540 hemY_coli hemY prote 99.5 1.4E-10 3E-15 122.8 32.1 281 458-747 97-398 (409)
49 KOG1173 Anaphase-promoting com 99.5 1.1E-09 2.4E-14 110.3 36.1 263 477-748 243-518 (611)
50 TIGR00540 hemY_coli hemY prote 99.5 3.9E-10 8.5E-15 119.4 35.4 289 387-711 95-398 (409)
51 KOG1155 Anaphase-promoting com 99.5 6.4E-10 1.4E-14 109.0 33.4 255 485-747 234-494 (559)
52 PF13429 TPR_15: Tetratricopep 99.4 5E-13 1.1E-17 134.3 11.6 253 451-711 14-276 (280)
53 KOG2047 mRNA splicing factor [ 99.4 2E-08 4.4E-13 102.6 42.3 282 446-747 388-686 (835)
54 COG3071 HemY Uncharacterized e 99.4 1.3E-09 2.9E-14 105.4 30.9 297 195-511 86-394 (400)
55 KOG4162 Predicted calmodulin-b 99.4 3.1E-08 6.7E-13 103.9 40.4 440 261-750 321-785 (799)
56 COG3071 HemY Uncharacterized e 99.4 5.8E-09 1.2E-13 101.1 32.3 288 388-746 96-388 (400)
57 TIGR02521 type_IV_pilW type IV 99.4 2.3E-10 5E-15 112.3 23.9 197 547-747 30-231 (234)
58 KOG1174 Anaphase-promoting com 99.3 3.6E-08 7.7E-13 95.5 36.5 264 446-716 233-504 (564)
59 COG2956 Predicted N-acetylgluc 99.3 4.1E-09 8.9E-14 98.8 29.0 299 387-755 46-354 (389)
60 KOG2047 mRNA splicing factor [ 99.3 1.6E-06 3.4E-11 89.3 47.3 518 70-665 102-709 (835)
61 KOG1840 Kinesin light chain [C 99.3 7.4E-10 1.6E-14 115.5 24.7 245 446-747 200-478 (508)
62 KOG1173 Anaphase-promoting com 99.3 2.6E-08 5.6E-13 100.7 32.7 285 374-693 242-532 (611)
63 PF13041 PPR_2: PPR repeat fam 99.3 1.4E-11 2.9E-16 85.8 5.9 50 189-238 1-50 (50)
64 PF13041 PPR_2: PPR repeat fam 99.2 1.9E-11 4.1E-16 85.0 6.4 50 374-423 1-50 (50)
65 KOG1156 N-terminal acetyltrans 99.2 6.9E-07 1.5E-11 92.1 40.2 441 239-707 20-506 (700)
66 PRK12370 invasion protein regu 99.2 2.3E-09 4.9E-14 118.1 24.7 211 529-749 320-536 (553)
67 KOG0985 Vesicle coat protein c 99.2 1E-05 2.2E-10 87.5 49.7 197 478-696 1104-1326(1666)
68 COG3063 PilF Tfp pilus assembl 99.2 1.5E-09 3.2E-14 97.1 18.1 163 581-750 37-204 (250)
69 KOG1129 TPR repeat-containing 99.2 7.4E-10 1.6E-14 103.5 16.8 229 449-749 227-459 (478)
70 KOG3785 Uncharacterized conser 99.2 3.4E-08 7.4E-13 93.6 27.9 419 197-716 63-494 (557)
71 KOG4162 Predicted calmodulin-b 99.2 2.9E-07 6.3E-12 96.8 37.2 132 580-716 651-787 (799)
72 KOG3616 Selective LIM binding 99.2 2.5E-06 5.4E-11 88.7 42.8 441 197-749 563-1025(1636)
73 KOG2376 Signal recognition par 99.2 3.3E-07 7.2E-12 93.3 35.6 253 484-745 230-517 (652)
74 KOG3785 Uncharacterized conser 99.2 9.6E-07 2.1E-11 84.0 34.7 407 174-653 71-497 (557)
75 KOG3616 Selective LIM binding 99.1 2.2E-06 4.8E-11 89.1 38.8 276 174-504 629-908 (1636)
76 PRK12370 invasion protein regu 99.1 7.5E-09 1.6E-13 114.1 23.1 180 560-748 316-502 (553)
77 PF12569 NARP1: NMDA receptor- 99.1 1.2E-06 2.7E-11 93.0 38.0 298 199-506 12-333 (517)
78 PRK11189 lipoprotein NlpI; Pro 99.1 1.5E-08 3.3E-13 101.9 22.4 213 527-749 40-266 (296)
79 KOG1127 TPR repeat-containing 99.1 2.8E-06 6.1E-11 91.8 39.8 620 72-748 494-1175(1238)
80 TIGR02521 type_IV_pilW type IV 99.1 2.5E-08 5.4E-13 97.8 23.4 197 478-713 31-233 (234)
81 KOG1174 Anaphase-promoting com 99.1 2.9E-06 6.2E-11 82.7 35.8 262 477-748 231-500 (564)
82 KOG3617 WD40 and TPR repeat-co 99.1 3.8E-05 8.3E-10 81.4 46.4 567 68-749 724-1360(1416)
83 KOG0548 Molecular co-chaperone 99.1 2.6E-07 5.5E-12 93.3 28.3 91 657-749 365-456 (539)
84 KOG1156 N-terminal acetyltrans 99.1 2.8E-05 6.1E-10 80.6 42.8 227 41-292 9-248 (700)
85 KOG1840 Kinesin light chain [C 99.0 2.5E-07 5.4E-12 96.9 27.7 241 412-710 200-477 (508)
86 KOG0985 Vesicle coat protein c 99.0 0.0001 2.2E-09 80.1 52.6 234 477-744 983-1245(1666)
87 KOG2376 Signal recognition par 99.0 9.9E-06 2.1E-10 82.9 36.7 189 458-677 320-518 (652)
88 PRK11189 lipoprotein NlpI; Pro 99.0 2.2E-07 4.8E-12 93.5 24.9 198 522-728 73-280 (296)
89 KOG1127 TPR repeat-containing 99.0 1.5E-05 3.3E-10 86.4 39.2 171 127-320 476-656 (1238)
90 KOG1129 TPR repeat-containing 99.0 3.8E-08 8.3E-13 92.3 16.8 234 380-649 227-461 (478)
91 KOG0624 dsRNA-activated protei 98.9 5.3E-06 1.1E-10 78.9 30.1 197 524-748 166-370 (504)
92 PF12569 NARP1: NMDA receptor- 98.9 2.8E-06 6.1E-11 90.3 30.2 123 620-745 200-331 (517)
93 KOG0548 Molecular co-chaperone 98.9 2.3E-06 5.1E-11 86.6 27.6 253 450-743 229-484 (539)
94 COG3063 PilF Tfp pilus assembl 98.9 5.6E-07 1.2E-11 81.0 20.6 192 551-747 38-235 (250)
95 PF04733 Coatomer_E: Coatomer 98.9 3.2E-07 6.9E-12 90.7 21.2 155 555-716 109-269 (290)
96 KOG3617 WD40 and TPR repeat-co 98.9 8.1E-05 1.8E-09 79.1 38.1 449 49-572 737-1243(1416)
97 cd05804 StaR_like StaR_like; a 98.8 9.7E-06 2.1E-10 85.1 30.6 295 451-749 12-337 (355)
98 KOG4340 Uncharacterized conser 98.7 2.5E-05 5.5E-10 72.8 26.8 186 552-748 245-443 (459)
99 KOG0624 dsRNA-activated protei 98.7 4.2E-05 9.2E-10 72.9 28.3 342 381-749 43-422 (504)
100 KOG1125 TPR repeat-containing 98.7 6.7E-07 1.5E-11 91.2 17.4 224 454-748 294-527 (579)
101 PF04733 Coatomer_E: Coatomer 98.7 7.8E-07 1.7E-11 88.0 17.6 192 546-748 64-265 (290)
102 PRK10370 formate-dependent nit 98.7 1.6E-06 3.4E-11 80.9 18.6 147 586-749 23-174 (198)
103 PRK15359 type III secretion sy 98.7 4E-07 8.7E-12 80.2 13.7 122 599-729 13-136 (144)
104 TIGR03302 OM_YfiO outer membra 98.7 2.4E-06 5.2E-11 83.5 20.3 181 547-748 32-232 (235)
105 KOG1125 TPR repeat-containing 98.7 9.7E-07 2.1E-11 90.1 17.2 212 423-641 297-525 (579)
106 PLN02789 farnesyltranstransfer 98.7 9.3E-06 2E-10 81.5 23.8 224 481-746 40-300 (320)
107 cd05804 StaR_like StaR_like; a 98.6 6.7E-05 1.5E-09 78.7 31.3 196 376-607 6-214 (355)
108 KOG1914 mRNA cleavage and poly 98.6 0.00083 1.8E-08 68.5 35.1 172 494-667 347-527 (656)
109 PRK15359 type III secretion sy 98.6 2.1E-06 4.6E-11 75.6 14.9 108 635-749 14-122 (144)
110 PRK04841 transcriptional regul 98.6 7.7E-05 1.7E-09 89.1 32.2 328 422-749 385-761 (903)
111 KOG4340 Uncharacterized conser 98.5 2.4E-05 5.1E-10 73.0 20.3 177 561-743 125-334 (459)
112 PRK15363 pathogenicity island 98.5 3.3E-06 7.2E-11 72.6 13.7 101 645-747 28-131 (157)
113 PRK15179 Vi polysaccharide bio 98.5 1.2E-05 2.6E-10 89.1 21.6 135 577-716 84-221 (694)
114 KOG1070 rRNA processing protei 98.5 1.3E-05 2.8E-10 90.0 21.3 201 546-752 1456-1667(1710)
115 TIGR03302 OM_YfiO outer membra 98.5 1E-05 2.3E-10 79.0 18.7 183 511-714 31-234 (235)
116 KOG1070 rRNA processing protei 98.5 3.5E-05 7.7E-10 86.6 24.1 221 409-630 1456-1687(1710)
117 PRK10370 formate-dependent nit 98.5 1.5E-05 3.2E-10 74.4 18.5 150 555-716 23-177 (198)
118 KOG1128 Uncharacterized conser 98.4 8.8E-06 1.9E-10 85.5 17.2 214 515-749 400-617 (777)
119 KOG1128 Uncharacterized conser 98.4 9.4E-06 2E-10 85.3 17.1 212 446-677 399-614 (777)
120 PF12854 PPR_1: PPR repeat 98.4 3.9E-07 8.5E-12 56.5 4.2 33 543-575 2-34 (34)
121 KOG3081 Vesicle coat complex C 98.4 0.00034 7.3E-09 64.9 24.7 251 455-716 18-275 (299)
122 TIGR02552 LcrH_SycD type III s 98.4 4.7E-06 1E-10 73.2 12.7 108 636-748 5-114 (135)
123 COG5010 TadD Flp pilus assembl 98.4 4.7E-05 1E-09 70.5 19.0 155 583-743 70-226 (257)
124 PRK15179 Vi polysaccharide bio 98.4 9.3E-05 2E-09 82.2 25.0 129 543-676 81-214 (694)
125 PRK04841 transcriptional regul 98.4 0.00076 1.7E-08 80.7 35.1 368 270-643 348-760 (903)
126 PF12854 PPR_1: PPR repeat 98.4 5.2E-07 1.1E-11 55.9 3.9 32 645-676 2-33 (34)
127 PLN02789 farnesyltranstransfer 98.3 8.1E-05 1.7E-09 74.8 20.4 191 553-749 42-251 (320)
128 COG4783 Putative Zn-dependent 98.3 0.00019 4.1E-09 72.6 22.3 145 581-749 308-455 (484)
129 COG5010 TadD Flp pilus assembl 98.3 5E-05 1.1E-09 70.4 16.6 155 552-710 70-229 (257)
130 COG4783 Putative Zn-dependent 98.3 0.00047 1E-08 69.8 24.0 177 563-747 252-436 (484)
131 PRK14720 transcript cleavage f 98.2 0.00084 1.8E-08 75.5 25.5 231 447-730 33-268 (906)
132 PF09976 TPR_21: Tetratricopep 98.1 0.00013 2.9E-09 64.5 15.9 115 627-744 24-143 (145)
133 TIGR02552 LcrH_SycD type III s 98.1 5.9E-05 1.3E-09 66.2 13.3 111 601-716 5-118 (135)
134 TIGR00756 PPR pentatricopeptid 98.1 4.8E-06 1E-10 52.8 4.3 35 192-226 1-35 (35)
135 KOG3060 Uncharacterized conser 98.1 0.0013 2.8E-08 60.7 20.9 160 554-716 58-224 (289)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6.4E-05 1.4E-09 76.9 14.4 122 618-746 173-295 (395)
137 PF09976 TPR_21: Tetratricopep 98.1 0.00012 2.7E-09 64.8 14.6 130 579-710 12-145 (145)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.0001 2.2E-09 75.5 15.1 127 550-680 171-298 (395)
139 PRK14720 transcript cleavage f 98.0 0.0038 8.2E-08 70.4 27.5 241 372-694 27-268 (906)
140 TIGR00756 PPR pentatricopeptid 98.0 9.5E-06 2.1E-10 51.4 4.4 35 377-411 1-35 (35)
141 KOG3081 Vesicle coat complex C 98.0 0.0016 3.5E-08 60.5 20.1 168 499-676 94-268 (299)
142 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.2E-10 50.8 4.2 34 191-224 1-34 (34)
143 KOG3060 Uncharacterized conser 98.0 0.00076 1.6E-08 62.1 17.4 163 581-750 54-222 (289)
144 PF13812 PPR_3: Pentatricopept 98.0 1.4E-05 2.9E-10 50.2 4.3 34 376-409 1-34 (34)
145 PLN03088 SGT1, suppressor of 97.9 0.00015 3.3E-09 74.8 14.0 103 621-728 9-113 (356)
146 COG4235 Cytochrome c biogenesi 97.9 0.00019 4.1E-09 68.5 12.8 102 647-750 152-258 (287)
147 cd00189 TPR Tetratricopeptide 97.9 0.00012 2.7E-09 59.4 10.5 95 652-748 2-97 (100)
148 KOG0553 TPR repeat-containing 97.9 0.00014 3.1E-09 68.8 11.1 90 589-683 91-183 (304)
149 KOG1914 mRNA cleavage and poly 97.9 0.046 9.9E-07 56.4 35.2 64 190-256 19-83 (656)
150 KOG0553 TPR repeat-containing 97.8 0.00023 5E-09 67.4 11.6 98 623-725 90-189 (304)
151 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00035 7.5E-09 59.7 12.2 96 653-748 5-105 (119)
152 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00051 1.1E-08 58.6 12.8 101 616-716 4-109 (119)
153 PF12895 Apc3: Anaphase-promot 97.8 2.9E-05 6.3E-10 61.2 4.5 79 663-744 2-83 (84)
154 PLN03088 SGT1, suppressor of 97.8 0.00037 7.9E-09 72.0 13.5 100 585-688 8-109 (356)
155 KOG2053 Mitochondrial inherita 97.8 0.11 2.3E-06 57.3 41.3 217 174-406 23-256 (932)
156 KOG0550 Molecular chaperone (D 97.7 0.0014 3E-08 64.8 15.7 89 658-748 257-350 (486)
157 PRK15331 chaperone protein Sic 97.7 0.00076 1.7E-08 58.6 12.4 101 645-747 31-133 (165)
158 KOG2053 Mitochondrial inherita 97.7 0.13 2.8E-06 56.7 45.4 183 275-472 55-253 (932)
159 PF13414 TPR_11: TPR repeat; P 97.7 8.2E-05 1.8E-09 56.0 5.6 64 683-748 3-67 (69)
160 PF01535 PPR: PPR repeat; Int 97.7 5.3E-05 1.1E-09 46.2 3.7 31 192-222 1-31 (31)
161 PF13432 TPR_16: Tetratricopep 97.7 0.00014 3.1E-09 53.9 6.8 58 689-748 3-60 (65)
162 PF13432 TPR_16: Tetratricopep 97.7 0.00013 2.7E-09 54.2 6.2 62 655-716 2-64 (65)
163 PF12895 Apc3: Anaphase-promot 97.6 0.0002 4.3E-09 56.4 7.1 78 593-674 3-82 (84)
164 PF01535 PPR: PPR repeat; Int 97.6 6.5E-05 1.4E-09 45.8 3.3 31 377-407 1-31 (31)
165 PRK02603 photosystem I assembl 97.6 0.00088 1.9E-08 61.4 12.2 83 650-734 35-121 (172)
166 PRK02603 photosystem I assembl 97.6 0.002 4.3E-08 59.1 14.4 117 578-716 34-153 (172)
167 CHL00033 ycf3 photosystem I as 97.6 0.00078 1.7E-08 61.5 11.0 95 650-746 35-140 (168)
168 COG4700 Uncharacterized protei 97.6 0.011 2.4E-07 51.8 16.9 151 590-747 67-221 (251)
169 KOG1130 Predicted G-alpha GTPa 97.6 0.00073 1.6E-08 66.4 10.9 132 616-747 197-343 (639)
170 PRK15363 pathogenicity island 97.6 0.003 6.6E-08 54.7 13.5 92 619-713 40-133 (157)
171 CHL00033 ycf3 photosystem I as 97.5 0.0019 4.1E-08 59.0 13.4 80 579-661 35-117 (168)
172 COG3898 Uncharacterized membra 97.5 0.11 2.5E-06 51.3 28.5 145 594-748 244-392 (531)
173 PF14559 TPR_19: Tetratricopep 97.5 0.0002 4.4E-09 53.6 5.5 50 695-746 3-52 (68)
174 cd00189 TPR Tetratricopeptide 97.5 0.0012 2.6E-08 53.3 10.6 90 622-714 8-99 (100)
175 PF14559 TPR_19: Tetratricopep 97.5 0.00017 3.7E-09 54.1 4.8 63 662-726 3-66 (68)
176 PRK10153 DNA-binding transcrip 97.5 0.0049 1.1E-07 66.6 17.5 136 577-716 335-486 (517)
177 PRK10153 DNA-binding transcrip 97.5 0.0032 6.9E-08 68.0 16.1 136 609-750 332-484 (517)
178 PF13414 TPR_11: TPR repeat; P 97.5 0.00034 7.3E-09 52.6 6.3 66 649-714 2-69 (69)
179 PF14938 SNAP: Soluble NSF att 97.5 0.015 3.1E-07 58.3 19.7 117 585-716 100-229 (282)
180 PF04840 Vps16_C: Vps16, C-ter 97.4 0.21 4.6E-06 50.3 26.4 106 553-675 182-287 (319)
181 PF13371 TPR_9: Tetratricopept 97.3 0.0008 1.7E-08 51.2 6.5 58 690-749 2-59 (73)
182 PF05843 Suf: Suppressor of fo 97.3 0.014 3E-07 58.2 16.7 134 580-716 2-140 (280)
183 PRK10803 tol-pal system protei 97.3 0.0033 7.1E-08 61.2 11.8 88 625-715 154-249 (263)
184 PRK10803 tol-pal system protei 97.2 0.0051 1.1E-07 60.0 12.5 98 652-749 145-247 (263)
185 KOG2041 WD40 repeat protein [G 97.2 0.48 1E-05 50.7 28.0 37 279-317 679-715 (1189)
186 PF13525 YfiO: Outer membrane 97.2 0.042 9E-07 51.8 17.8 50 699-748 106-170 (203)
187 PF12688 TPR_5: Tetratrico pep 97.1 0.0084 1.8E-07 50.1 11.3 90 656-745 7-101 (120)
188 COG4700 Uncharacterized protei 97.1 0.024 5.2E-07 49.8 14.1 111 639-750 78-191 (251)
189 KOG0543 FKBP-type peptidyl-pro 97.1 0.0048 1E-07 61.5 11.1 82 685-794 259-340 (397)
190 PF08579 RPM2: Mitochondrial r 97.1 0.0074 1.6E-07 48.3 9.6 85 519-626 31-116 (120)
191 KOG0550 Molecular chaperone (D 97.0 0.25 5.5E-06 49.5 21.9 88 586-676 256-347 (486)
192 PF10037 MRP-S27: Mitochondria 97.0 0.0069 1.5E-07 62.6 12.0 120 507-626 60-185 (429)
193 KOG2280 Vacuolar assembly/sort 97.0 0.7 1.5E-05 50.1 27.4 110 550-675 686-795 (829)
194 PRK11906 transcriptional regul 97.0 0.055 1.2E-06 55.7 17.8 159 580-743 252-431 (458)
195 KOG2041 WD40 repeat protein [G 97.0 0.56 1.2E-05 50.2 25.1 120 223-353 689-819 (1189)
196 PF13371 TPR_9: Tetratricopept 97.0 0.0027 5.9E-08 48.3 6.8 65 657-723 2-67 (73)
197 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0034 7.4E-08 64.1 8.8 63 650-712 75-141 (453)
198 PF14938 SNAP: Soluble NSF att 96.9 0.029 6.4E-07 56.1 15.4 163 585-748 41-225 (282)
199 PF10037 MRP-S27: Mitochondria 96.9 0.018 4E-07 59.6 13.8 116 477-592 65-186 (429)
200 PF12688 TPR_5: Tetratrico pep 96.9 0.025 5.5E-07 47.3 12.1 91 585-675 7-100 (120)
201 PRK10866 outer membrane biogen 96.8 0.32 6.9E-06 47.2 20.9 175 554-746 38-239 (243)
202 PRK10866 outer membrane biogen 96.8 0.058 1.3E-06 52.2 15.5 56 452-507 39-98 (243)
203 PF08579 RPM2: Mitochondrial r 96.8 0.033 7.2E-07 44.8 11.0 81 581-662 27-116 (120)
204 KOG1538 Uncharacterized conser 96.8 0.27 5.8E-06 52.0 20.3 52 379-433 601-654 (1081)
205 PF13424 TPR_12: Tetratricopep 96.7 0.0018 3.8E-08 50.1 3.9 24 652-675 7-30 (78)
206 KOG2796 Uncharacterized conser 96.7 0.099 2.1E-06 48.8 15.3 135 480-616 179-321 (366)
207 PF05843 Suf: Suppressor of fo 96.7 0.032 6.9E-07 55.6 13.3 130 377-507 2-136 (280)
208 PF13431 TPR_17: Tetratricopep 96.7 0.0011 2.5E-08 40.9 1.9 32 706-739 2-33 (34)
209 KOG1130 Predicted G-alpha GTPa 96.6 0.018 4E-07 57.0 10.7 258 385-642 26-343 (639)
210 PF07079 DUF1347: Protein of u 96.6 0.98 2.1E-05 46.1 41.4 117 559-678 390-523 (549)
211 KOG2796 Uncharacterized conser 96.6 0.17 3.7E-06 47.3 16.1 136 581-716 179-319 (366)
212 PF13424 TPR_12: Tetratricopep 96.6 0.002 4.3E-08 49.8 3.4 68 680-747 2-74 (78)
213 PF06239 ECSIT: Evolutionarily 96.6 0.026 5.6E-07 51.5 10.6 99 465-563 34-153 (228)
214 PF06239 ECSIT: Evolutionarily 96.6 0.025 5.4E-07 51.6 10.5 96 569-665 35-153 (228)
215 PF13428 TPR_14: Tetratricopep 96.5 0.0043 9.4E-08 41.3 4.2 42 684-727 2-43 (44)
216 PF13281 DUF4071: Domain of un 96.5 0.38 8.1E-06 49.0 19.4 161 553-716 146-338 (374)
217 PF13525 YfiO: Outer membrane 96.5 0.32 6.9E-06 45.8 17.9 53 688-740 146-199 (203)
218 KOG4555 TPR repeat-containing 96.4 0.035 7.6E-07 45.6 9.3 96 656-751 49-147 (175)
219 PF07079 DUF1347: Protein of u 96.4 1.4 3E-05 45.1 34.4 42 195-236 132-177 (549)
220 COG3898 Uncharacterized membra 96.4 1.2 2.7E-05 44.5 29.4 125 556-688 271-400 (531)
221 PRK11906 transcriptional regul 96.4 0.068 1.5E-06 55.0 13.3 121 629-751 273-404 (458)
222 COG4235 Cytochrome c biogenesi 96.3 0.22 4.7E-06 48.2 15.5 103 611-716 153-260 (287)
223 PF13512 TPR_18: Tetratricopep 96.3 0.14 3E-06 43.8 12.7 53 624-676 20-73 (142)
224 PF13512 TPR_18: Tetratricopep 96.2 0.12 2.5E-06 44.2 11.8 99 650-748 10-128 (142)
225 COG4105 ComL DNA uptake lipopr 96.2 0.77 1.7E-05 43.5 18.1 139 586-748 41-196 (254)
226 KOG1538 Uncharacterized conser 96.2 0.24 5.1E-06 52.4 15.8 56 450-505 778-844 (1081)
227 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.05 1.1E-06 55.8 11.0 63 613-678 74-140 (453)
228 COG1729 Uncharacterized protei 96.0 0.082 1.8E-06 50.3 11.0 100 616-716 144-248 (262)
229 KOG0543 FKBP-type peptidyl-pro 95.9 0.09 2E-06 52.7 11.2 97 650-748 257-355 (397)
230 PF03704 BTAD: Bacterial trans 95.8 0.15 3.3E-06 45.1 11.8 107 624-747 16-124 (146)
231 PF10300 DUF3808: Protein of u 95.8 0.56 1.2E-05 50.5 17.8 159 585-748 194-376 (468)
232 COG1729 Uncharacterized protei 95.8 0.088 1.9E-06 50.1 10.1 96 652-748 144-244 (262)
233 PF09205 DUF1955: Domain of un 95.7 0.66 1.4E-05 38.6 13.4 140 590-751 13-152 (161)
234 KOG1941 Acetylcholine receptor 95.6 1.6 3.4E-05 43.2 18.0 124 620-743 212-355 (518)
235 COG3118 Thioredoxin domain-con 95.6 0.95 2.1E-05 43.7 16.4 30 711-742 230-259 (304)
236 COG0457 NrfG FOG: TPR repeat [ 95.6 2.3 4.9E-05 41.0 27.1 195 548-748 59-265 (291)
237 PF12921 ATP13: Mitochondrial 95.6 0.17 3.7E-06 42.8 10.3 97 548-660 2-98 (126)
238 PF04840 Vps16_C: Vps16, C-ter 95.5 3.1 6.8E-05 42.0 29.1 103 451-571 183-285 (319)
239 KOG2114 Vacuolar assembly/sort 95.5 4.3 9.4E-05 45.0 22.3 47 451-499 711-757 (933)
240 KOG1941 Acetylcholine receptor 95.2 0.35 7.7E-06 47.5 12.2 124 621-744 129-271 (518)
241 PF12921 ATP13: Mitochondrial 95.2 0.19 4.1E-06 42.6 9.3 94 330-423 2-100 (126)
242 PF03704 BTAD: Bacterial trans 95.1 0.2 4.4E-06 44.3 10.1 71 581-652 64-138 (146)
243 KOG4234 TPR repeat-containing 95.1 0.19 4.2E-06 44.9 9.3 92 657-750 102-199 (271)
244 KOG2066 Vacuolar assembly/sort 95.1 6.7 0.00015 43.3 23.6 27 378-404 507-533 (846)
245 KOG2114 Vacuolar assembly/sort 95.0 7.7 0.00017 43.2 27.5 132 174-316 348-485 (933)
246 PF09613 HrpB1_HrpK: Bacterial 94.9 0.88 1.9E-05 39.8 12.7 91 622-715 18-109 (160)
247 COG5107 RNA14 Pre-mRNA 3'-end 94.9 5.3 0.00012 40.9 31.3 141 578-725 396-542 (660)
248 PRK11619 lytic murein transgly 94.8 9.1 0.0002 43.1 32.7 134 386-528 43-178 (644)
249 COG4105 ComL DNA uptake lipopr 94.7 2.2 4.9E-05 40.5 15.7 52 456-507 45-100 (254)
250 PF02259 FAT: FAT domain; Int 94.7 3.4 7.3E-05 43.1 19.6 147 578-729 145-302 (352)
251 COG0457 NrfG FOG: TPR repeat [ 94.7 4.4 9.5E-05 38.9 23.7 162 549-715 96-268 (291)
252 KOG2610 Uncharacterized conser 94.6 0.47 1E-05 46.1 11.2 162 591-755 115-283 (491)
253 PF07719 TPR_2: Tetratricopept 94.5 0.077 1.7E-06 32.7 4.1 32 685-716 3-34 (34)
254 PRK15331 chaperone protein Sic 94.5 0.98 2.1E-05 39.8 12.0 93 586-682 44-137 (165)
255 COG5107 RNA14 Pre-mRNA 3'-end 94.4 6.8 0.00015 40.2 35.6 125 548-677 397-529 (660)
256 PF04184 ST7: ST7 protein; In 94.4 2.4 5.1E-05 44.3 16.1 101 616-716 261-379 (539)
257 KOG1258 mRNA processing protei 94.3 8.9 0.00019 41.1 37.2 182 547-733 296-489 (577)
258 PF00515 TPR_1: Tetratricopept 94.3 0.066 1.4E-06 33.1 3.5 32 684-715 2-33 (34)
259 COG3118 Thioredoxin domain-con 94.2 1.9 4.1E-05 41.8 14.1 179 565-745 120-299 (304)
260 KOG4555 TPR repeat-containing 94.1 1.5 3.3E-05 36.4 11.4 51 590-641 54-104 (175)
261 KOG3941 Intermediate in Toll s 94.0 0.53 1.1E-05 44.7 9.9 99 567-666 53-174 (406)
262 KOG3941 Intermediate in Toll s 93.9 0.61 1.3E-05 44.3 10.1 101 464-564 53-174 (406)
263 PF13428 TPR_14: Tetratricopep 93.9 0.14 3.1E-06 33.9 4.6 38 652-689 3-41 (44)
264 COG2976 Uncharacterized protei 93.8 4.1 8.8E-05 36.9 14.5 91 622-715 97-191 (207)
265 smart00299 CLH Clathrin heavy 93.8 2.6 5.6E-05 36.8 13.8 41 451-491 13-54 (140)
266 KOG1920 IkappaB kinase complex 93.8 10 0.00023 44.1 20.9 110 581-709 941-1052(1265)
267 KOG2280 Vacuolar assembly/sort 93.7 13 0.00028 41.0 32.3 102 452-570 691-792 (829)
268 KOG2610 Uncharacterized conser 93.7 1.8 3.9E-05 42.3 13.1 154 559-716 114-282 (491)
269 PF04097 Nic96: Nup93/Nic96; 93.7 5.4 0.00012 44.9 19.2 67 375-442 110-183 (613)
270 PF04184 ST7: ST7 protein; In 93.7 2 4.3E-05 44.8 14.1 63 650-712 259-324 (539)
271 PF10300 DUF3808: Protein of u 93.6 3.8 8.2E-05 44.3 17.2 117 593-711 247-375 (468)
272 PF04053 Coatomer_WDAD: Coatom 93.0 3.8 8.3E-05 43.6 15.7 104 555-676 325-428 (443)
273 KOG1920 IkappaB kinase complex 93.0 23 0.0005 41.5 24.0 112 550-678 941-1054(1265)
274 smart00299 CLH Clathrin heavy 92.8 4.7 0.0001 35.2 13.9 42 112-154 12-53 (140)
275 KOG1585 Protein required for f 92.7 8.9 0.00019 36.1 16.8 197 418-637 38-250 (308)
276 PF04053 Coatomer_WDAD: Coatom 92.7 1.9 4.1E-05 45.8 13.0 76 658-747 326-401 (443)
277 PF09205 DUF1955: Domain of un 92.7 5.4 0.00012 33.5 14.1 64 581-646 88-151 (161)
278 PF09613 HrpB1_HrpK: Bacterial 92.6 4.7 0.0001 35.4 12.9 66 425-490 24-89 (160)
279 KOG1464 COP9 signalosome, subu 92.6 9.8 0.00021 36.2 19.0 243 459-708 41-328 (440)
280 KOG1258 mRNA processing protei 92.1 20 0.00043 38.7 30.7 131 69-220 44-180 (577)
281 PF13281 DUF4071: Domain of un 92.1 16 0.00035 37.6 18.9 72 451-522 147-226 (374)
282 KOG3364 Membrane protein invol 91.7 3.8 8.1E-05 34.5 10.6 29 688-716 76-104 (149)
283 TIGR02561 HrpB1_HrpK type III 91.5 4.8 0.0001 34.7 11.4 68 625-695 21-89 (153)
284 COG3629 DnrI DNA-binding trans 91.5 1.4 3E-05 43.0 9.3 75 447-521 155-235 (280)
285 PF13176 TPR_7: Tetratricopept 91.4 0.38 8.3E-06 30.1 3.8 25 722-746 2-26 (36)
286 PF13181 TPR_8: Tetratricopept 91.3 0.3 6.5E-06 30.0 3.3 30 685-714 3-32 (34)
287 PF08631 SPO22: Meiosis protei 91.3 17 0.00036 36.3 24.1 20 587-606 254-273 (278)
288 KOG2066 Vacuolar assembly/sort 91.0 30 0.00064 38.6 21.7 28 551-578 508-535 (846)
289 KOG0890 Protein kinase of the 90.6 61 0.0013 41.4 30.2 148 382-537 1389-1542(2382)
290 COG2976 Uncharacterized protei 90.4 12 0.00026 34.1 13.3 92 655-749 94-189 (207)
291 KOG1585 Protein required for f 90.1 17 0.00037 34.3 16.6 142 582-742 94-250 (308)
292 TIGR02561 HrpB1_HrpK type III 90.0 12 0.00026 32.4 12.6 55 424-478 23-77 (153)
293 PF13170 DUF4003: Protein of u 89.9 8.2 0.00018 38.6 13.6 84 596-680 160-251 (297)
294 COG4785 NlpI Lipoprotein NlpI, 89.7 3.2 7E-05 38.0 9.3 126 607-740 56-187 (297)
295 KOG4570 Uncharacterized conser 89.7 3 6.4E-05 40.5 9.6 97 543-643 59-164 (418)
296 PF13176 TPR_7: Tetratricopept 89.7 0.45 9.8E-06 29.8 3.0 26 686-711 2-27 (36)
297 KOG4648 Uncharacterized conser 89.6 1.2 2.7E-05 43.5 7.1 94 620-716 103-198 (536)
298 KOG4234 TPR repeat-containing 89.2 7 0.00015 35.4 10.9 25 692-716 177-201 (271)
299 PF08631 SPO22: Meiosis protei 89.2 25 0.00055 35.0 26.2 19 387-405 4-22 (278)
300 PF02259 FAT: FAT domain; Int 89.2 27 0.00059 36.2 18.0 70 679-748 142-213 (352)
301 COG3629 DnrI DNA-binding trans 89.1 2.9 6.3E-05 40.8 9.3 74 550-623 155-236 (280)
302 PF07035 Mic1: Colon cancer-as 89.0 7.8 0.00017 34.6 11.2 100 599-709 14-115 (167)
303 PF07719 TPR_2: Tetratricopept 89.0 0.64 1.4E-05 28.4 3.4 30 720-749 2-31 (34)
304 KOG1464 COP9 signalosome, subu 88.9 19 0.00041 34.3 14.0 204 543-746 21-259 (440)
305 COG4649 Uncharacterized protei 88.9 5.5 0.00012 35.2 9.7 121 590-711 69-195 (221)
306 PF00637 Clathrin: Region in C 88.8 0.074 1.6E-06 46.9 -1.5 85 112-217 12-96 (143)
307 PF13431 TPR_17: Tetratricopep 87.7 0.61 1.3E-05 28.7 2.6 21 650-670 13-33 (34)
308 PF04910 Tcf25: Transcriptiona 87.7 36 0.00078 35.3 16.9 51 623-676 112-165 (360)
309 PF00515 TPR_1: Tetratricopept 87.6 1.3 2.8E-05 27.1 4.1 27 581-607 3-29 (34)
310 PF07035 Mic1: Colon cancer-as 87.0 22 0.00048 31.8 16.5 90 576-676 26-115 (167)
311 PF13174 TPR_6: Tetratricopept 87.0 1 2.2E-05 27.2 3.4 28 688-715 5-32 (33)
312 KOG1586 Protein required for f 87.0 27 0.00059 32.8 14.6 97 652-748 115-224 (288)
313 PF14853 Fis1_TPR_C: Fis1 C-te 86.5 3.6 7.9E-05 28.4 6.0 50 721-796 3-52 (53)
314 KOG0276 Vesicle coat complex C 86.4 11 0.00024 40.4 12.0 150 560-745 598-747 (794)
315 PF04097 Nic96: Nup93/Nic96; 86.3 54 0.0012 37.0 18.6 45 297-343 114-158 (613)
316 KOG4648 Uncharacterized conser 86.3 4.9 0.00011 39.5 8.9 92 586-682 104-198 (536)
317 PF10602 RPN7: 26S proteasome 86.1 9.3 0.0002 34.9 10.5 61 581-641 38-100 (177)
318 PF07721 TPR_4: Tetratricopept 86.0 1.1 2.3E-05 25.6 2.8 24 720-743 2-25 (26)
319 PRK09687 putative lyase; Provi 85.5 41 0.00089 33.5 26.6 25 689-714 241-265 (280)
320 PF14561 TPR_20: Tetratricopep 85.3 15 0.00033 28.9 9.9 77 670-746 9-86 (90)
321 KOG1550 Extracellular protein 85.2 54 0.0012 36.5 17.9 149 591-751 261-429 (552)
322 KOG1308 Hsp70-interacting prot 84.8 0.53 1.1E-05 46.2 1.8 92 662-755 126-218 (377)
323 PF06552 TOM20_plant: Plant sp 84.6 12 0.00026 33.6 9.8 44 699-751 96-139 (186)
324 PF14853 Fis1_TPR_C: Fis1 C-te 84.6 3.1 6.7E-05 28.8 5.0 37 685-723 3-39 (53)
325 KOG0545 Aryl-hydrocarbon recep 84.5 25 0.00055 33.2 12.1 94 653-748 181-293 (329)
326 PRK10941 hypothetical protein; 84.3 8.4 0.00018 37.8 9.8 62 685-748 183-244 (269)
327 PF10345 Cohesin_load: Cohesin 84.2 81 0.0018 35.7 32.8 461 242-745 37-603 (608)
328 PRK11619 lytic murein transgly 83.7 85 0.0018 35.6 33.4 67 174-242 113-179 (644)
329 PF13181 TPR_8: Tetratricopept 83.7 2.4 5.2E-05 25.8 3.9 29 720-748 2-30 (34)
330 PF13170 DUF4003: Protein of u 82.9 55 0.0012 32.9 18.5 131 393-555 79-224 (297)
331 COG4649 Uncharacterized protei 82.9 34 0.00074 30.5 16.5 125 558-683 68-200 (221)
332 smart00028 TPR Tetratricopepti 82.8 3 6.4E-05 24.4 4.2 31 685-715 3-33 (34)
333 PF09986 DUF2225: Uncharacteri 82.6 10 0.00023 35.8 9.4 64 685-748 120-194 (214)
334 COG1747 Uncharacterized N-term 82.3 73 0.0016 33.8 23.9 93 477-574 65-157 (711)
335 PF06552 TOM20_plant: Plant sp 82.3 3.7 8.1E-05 36.7 5.8 46 699-746 51-100 (186)
336 KOG4642 Chaperone-dependent E3 82.1 3.8 8.3E-05 38.2 6.0 87 623-712 19-107 (284)
337 PF10602 RPN7: 26S proteasome 81.9 10 0.00023 34.6 8.9 64 192-255 37-102 (177)
338 PF13174 TPR_6: Tetratricopept 81.2 1.9 4.2E-05 25.9 2.8 28 721-748 2-29 (33)
339 PF14432 DYW_deaminase: DYW fa 81.2 1.5 3.1E-05 36.7 2.8 22 755-780 2-23 (116)
340 KOG1550 Extracellular protein 80.9 99 0.0021 34.5 22.8 63 480-543 290-358 (552)
341 PF13374 TPR_10: Tetratricopep 80.7 2.7 5.8E-05 27.0 3.6 28 720-747 3-30 (42)
342 KOG4279 Serine/threonine prote 79.2 1.1E+02 0.0024 34.1 16.8 181 480-716 203-399 (1226)
343 PF13374 TPR_10: Tetratricopep 78.9 4.8 0.0001 25.8 4.3 28 580-607 3-30 (42)
344 PF02284 COX5A: Cytochrome c o 78.4 11 0.00025 30.0 6.6 59 496-556 28-87 (108)
345 TIGR02508 type_III_yscG type I 78.3 30 0.00065 27.6 8.7 62 451-517 45-106 (115)
346 cd00923 Cyt_c_Oxidase_Va Cytoc 78.0 13 0.00028 29.3 6.7 59 495-555 24-83 (103)
347 PF02284 COX5A: Cytochrome c o 77.7 34 0.00074 27.4 9.0 59 394-452 28-86 (108)
348 cd00923 Cyt_c_Oxidase_Va Cytoc 76.4 15 0.00033 28.9 6.7 47 394-440 25-71 (103)
349 KOG1586 Protein required for f 76.0 72 0.0016 30.2 15.4 20 697-716 209-228 (288)
350 PF11207 DUF2989: Protein of u 76.0 25 0.00054 32.4 9.1 74 596-670 123-198 (203)
351 PF00637 Clathrin: Region in C 74.9 1.7 3.7E-05 38.1 1.6 53 520-572 14-66 (143)
352 PF07721 TPR_4: Tetratricopept 74.8 5 0.00011 22.7 3.0 21 654-674 5-25 (26)
353 PRK15180 Vi polysaccharide bio 74.5 17 0.00037 37.7 8.5 50 625-676 334-383 (831)
354 COG4785 NlpI Lipoprotein NlpI, 74.3 76 0.0016 29.6 17.9 29 615-643 238-266 (297)
355 KOG4521 Nuclear pore complex, 72.9 1.3E+02 0.0028 35.6 15.3 124 617-741 986-1124(1480)
356 COG3947 Response regulator con 72.9 87 0.0019 30.7 12.1 61 685-747 281-341 (361)
357 COG5178 PRP8 U5 snRNP spliceos 72.4 2.8 6.1E-05 47.7 2.8 11 1-11 1-11 (2365)
358 KOG2300 Uncharacterized conser 72.2 1.4E+02 0.003 31.7 30.2 159 588-747 332-513 (629)
359 PF09477 Type_III_YscG: Bacter 72.2 49 0.0011 26.8 8.7 84 428-516 23-106 (116)
360 TIGR02508 type_III_yscG type I 71.9 49 0.0011 26.4 9.8 59 556-617 47-105 (115)
361 KOG0276 Vesicle coat complex C 71.0 39 0.00084 36.5 10.3 101 454-573 646-746 (794)
362 PF04190 DUF410: Protein of un 71.0 1.1E+02 0.0024 30.1 16.1 112 174-296 4-123 (260)
363 COG2909 MalT ATP-dependent tra 70.9 2E+02 0.0044 33.1 26.5 218 524-744 426-684 (894)
364 PF13929 mRNA_stabil: mRNA sta 69.9 1.2E+02 0.0026 30.0 15.2 112 279-400 144-262 (292)
365 PRK15180 Vi polysaccharide bio 69.7 51 0.0011 34.4 10.5 139 625-769 300-439 (831)
366 PF10579 Rapsyn_N: Rapsyn N-te 69.5 12 0.00026 28.3 4.6 47 626-672 18-65 (80)
367 PRK10941 hypothetical protein; 69.4 35 0.00076 33.5 9.3 70 652-723 183-253 (269)
368 KOG4642 Chaperone-dependent E3 69.4 55 0.0012 31.0 9.7 81 558-640 20-104 (284)
369 PRK09687 putative lyase; Provi 69.1 1.3E+02 0.0028 30.0 26.1 150 188-345 65-221 (280)
370 TIGR03504 FimV_Cterm FimV C-te 68.7 8.7 0.00019 25.4 3.4 27 723-749 3-29 (44)
371 PF13929 mRNA_stabil: mRNA sta 68.3 1.3E+02 0.0028 29.7 16.2 111 390-500 142-260 (292)
372 KOG0376 Serine-threonine phosp 66.7 12 0.00027 39.0 5.7 86 659-746 13-99 (476)
373 PF11207 DUF2989: Protein of u 66.2 47 0.001 30.7 8.6 75 208-283 123-198 (203)
374 KOG4570 Uncharacterized conser 65.8 62 0.0014 32.0 9.7 82 174-256 78-165 (418)
375 smart00028 TPR Tetratricopepti 65.2 12 0.00025 21.5 3.6 29 720-748 2-30 (34)
376 COG0790 FOG: TPR repeat, SEL1 65.1 1.6E+02 0.0034 29.6 19.8 130 562-697 91-236 (292)
377 KOG3807 Predicted membrane pro 63.9 1.6E+02 0.0035 29.4 12.1 53 585-639 281-336 (556)
378 PF09670 Cas_Cas02710: CRISPR- 63.1 96 0.0021 32.5 11.7 50 558-607 141-197 (379)
379 COG4455 ImpE Protein of avirul 62.8 30 0.00065 32.2 6.7 64 653-716 4-68 (273)
380 COG1747 Uncharacterized N-term 62.8 2.2E+02 0.0048 30.5 22.7 164 510-679 63-234 (711)
381 smart00777 Mad3_BUB1_I Mad3/BU 61.9 24 0.00052 29.8 5.7 53 685-743 71-123 (125)
382 PF10579 Rapsyn_N: Rapsyn N-te 61.7 25 0.00054 26.6 5.0 47 591-637 18-66 (80)
383 PF01690 PLRV_ORF5: Potato lea 61.5 6.8 0.00015 40.7 2.8 9 5-13 5-13 (465)
384 PF04190 DUF410: Protein of un 61.4 1.7E+02 0.0037 28.8 17.6 83 546-643 88-170 (260)
385 PF07720 TPR_3: Tetratricopept 61.3 22 0.00049 22.2 4.1 30 685-714 3-34 (36)
386 COG3357 Predicted transcriptio 61.1 14 0.0003 28.3 3.6 33 778-810 33-70 (97)
387 PF08311 Mad3_BUB1_I: Mad3/BUB 60.7 51 0.0011 28.0 7.6 44 701-744 81-124 (126)
388 TIGR03504 FimV_Cterm FimV C-te 59.9 21 0.00046 23.6 3.9 24 585-608 5-28 (44)
389 COG2909 MalT ATP-dependent tra 59.6 3.3E+02 0.0072 31.5 27.2 219 456-675 426-684 (894)
390 PF14561 TPR_20: Tetratricopep 58.8 24 0.00052 27.9 4.9 45 703-749 8-52 (90)
391 COG4455 ImpE Protein of avirul 58.6 68 0.0015 30.0 8.1 76 194-271 4-80 (273)
392 PRK13800 putative oxidoreducta 58.5 4E+02 0.0086 32.1 20.8 254 60-358 625-880 (897)
393 COG4976 Predicted methyltransf 57.3 20 0.00044 33.5 4.7 57 660-716 5-62 (287)
394 KOG1923 Rac1 GTPase effector F 57.3 13 0.00029 40.9 4.2 7 775-781 790-796 (830)
395 KOG4507 Uncharacterized conser 56.6 40 0.00086 36.2 7.3 96 625-725 618-716 (886)
396 PF07163 Pex26: Pex26 protein; 55.6 1.2E+02 0.0025 29.7 9.5 55 485-541 90-146 (309)
397 KOG0403 Neoplastic transformat 55.3 2.7E+02 0.0059 29.2 19.6 59 551-609 512-573 (645)
398 PF08311 Mad3_BUB1_I: Mad3/BUB 54.9 89 0.0019 26.6 8.1 43 632-675 81-124 (126)
399 PF13934 ELYS: Nuclear pore co 54.6 2E+02 0.0044 27.5 12.3 103 582-695 79-184 (226)
400 PRK13800 putative oxidoreducta 53.9 4.7E+02 0.01 31.5 25.5 184 546-747 696-880 (897)
401 PF07163 Pex26: Pex26 protein; 53.8 1.5E+02 0.0033 29.0 10.0 86 586-674 90-182 (309)
402 cd00280 TRFH Telomeric Repeat 53.5 90 0.002 28.3 7.9 22 690-711 118-139 (200)
403 COG2888 Predicted Zn-ribbon RN 53.3 10 0.00022 26.4 1.7 20 790-809 42-61 (61)
404 PF12862 Apc5: Anaphase-promot 52.8 47 0.001 26.4 5.8 54 694-747 9-69 (94)
405 PF13762 MNE1: Mitochondrial s 52.6 1.4E+02 0.003 26.1 8.8 66 174-239 53-128 (145)
406 KOG4077 Cytochrome c oxidase, 51.8 69 0.0015 26.8 6.4 58 394-451 67-124 (149)
407 KOG2758 Translation initiation 51.8 2.6E+02 0.0056 27.9 14.6 165 534-711 21-195 (432)
408 PF10366 Vps39_1: Vacuolar sor 51.4 71 0.0015 26.2 6.7 27 480-506 41-67 (108)
409 KOG0551 Hsp90 co-chaperone CNS 51.1 1E+02 0.0022 30.9 8.5 95 650-746 81-180 (390)
410 PLN03132 NADH dehydrogenase (u 50.9 22 0.00047 37.8 4.5 21 5-25 14-34 (461)
411 PF08424 NRDE-2: NRDE-2, neces 49.8 3E+02 0.0065 28.1 14.9 116 595-714 47-185 (321)
412 KOG0991 Replication factor C, 49.7 2.4E+02 0.0051 26.9 11.6 137 269-412 136-274 (333)
413 KOG0890 Protein kinase of the 49.6 7.5E+02 0.016 32.6 34.3 66 681-750 1668-1733(2382)
414 PRK12798 chemotaxis protein; R 49.3 3.4E+02 0.0073 28.5 22.6 151 561-714 125-288 (421)
415 KOG0292 Vesicle coat complex C 49.0 22 0.00048 40.0 4.3 97 621-744 627-723 (1202)
416 KOG2300 Uncharacterized conser 48.9 3.6E+02 0.0079 28.8 32.0 92 487-578 332-434 (629)
417 PF13762 MNE1: Mitochondrial s 48.8 1.8E+02 0.004 25.3 10.5 101 321-427 28-131 (145)
418 PF11846 DUF3366: Domain of un 48.6 74 0.0016 29.5 7.4 30 647-676 141-170 (193)
419 KOG2581 26S proteasome regulat 48.5 3.4E+02 0.0073 28.3 12.5 21 617-637 212-232 (493)
420 cd08819 CARD_MDA5_2 Caspase ac 48.3 1.2E+02 0.0027 23.6 6.9 39 560-599 48-86 (88)
421 PF04910 Tcf25: Transcriptiona 48.1 3.4E+02 0.0074 28.2 13.5 59 688-747 108-167 (360)
422 PF11768 DUF3312: Protein of u 47.7 2.2E+02 0.0047 31.0 11.1 56 552-607 412-472 (545)
423 KOG0687 26S proteasome regulat 47.5 3.1E+02 0.0067 27.6 12.7 24 617-640 107-130 (393)
424 KOG3364 Membrane protein invol 47.3 1.9E+02 0.004 24.9 10.1 64 611-676 29-97 (149)
425 PF14689 SPOB_a: Sensor_kinase 46.2 44 0.00096 24.1 4.2 23 619-641 28-50 (62)
426 TIGR02710 CRISPR-associated pr 46.2 3.3E+02 0.0072 28.4 11.9 30 586-615 137-166 (380)
427 PF12037 DUF3523: Domain of un 45.9 32 0.00069 33.5 4.4 27 39-65 30-57 (276)
428 KOG3824 Huntingtin interacting 45.9 40 0.00087 33.0 5.0 45 626-673 128-173 (472)
429 PRK14890 putative Zn-ribbon RN 45.7 16 0.00035 25.6 1.7 20 790-809 40-59 (59)
430 COG4941 Predicted RNA polymera 45.7 3.4E+02 0.0073 27.5 11.8 126 577-716 262-398 (415)
431 COG0790 FOG: TPR repeat, SEL1 45.2 3.3E+02 0.0071 27.2 20.8 178 562-749 55-267 (292)
432 PHA02875 ankyrin repeat protei 45.0 4.1E+02 0.0088 28.2 17.4 141 174-330 79-230 (413)
433 KOG0508 Ankyrin repeat protein 43.8 4.3E+02 0.0092 28.1 12.0 333 114-489 88-448 (615)
434 PF14689 SPOB_a: Sensor_kinase 43.7 22 0.00048 25.6 2.4 30 477-506 22-51 (62)
435 COG3947 Response regulator con 43.6 3.4E+02 0.0073 26.9 14.0 69 581-650 281-353 (361)
436 PRK14963 DNA polymerase III su 43.4 1.9E+02 0.0042 31.7 10.5 96 311-409 178-274 (504)
437 PF11848 DUF3368: Domain of un 43.3 94 0.002 21.0 5.2 35 385-419 11-45 (48)
438 PF10366 Vps39_1: Vacuolar sor 43.1 1.6E+02 0.0035 24.2 7.6 27 581-607 41-67 (108)
439 KOG2034 Vacuolar sorting prote 43.0 6E+02 0.013 29.6 29.9 22 451-472 536-557 (911)
440 PRK10564 maltose regulon perip 42.8 44 0.00095 33.0 4.9 43 374-416 254-297 (303)
441 KOG0376 Serine-threonine phosp 42.8 59 0.0013 34.3 6.0 103 586-694 11-116 (476)
442 PRK14956 DNA polymerase III su 42.6 2.7E+02 0.0058 30.2 11.0 95 315-411 187-283 (484)
443 cd08819 CARD_MDA5_2 Caspase ac 42.4 1.6E+02 0.0035 23.0 6.8 38 275-313 48-85 (88)
444 PF11848 DUF3368: Domain of un 42.3 83 0.0018 21.2 4.8 36 200-235 11-46 (48)
445 KOG2581 26S proteasome regulat 41.9 3.4E+02 0.0074 28.2 10.8 139 578-716 123-280 (493)
446 KOG4077 Cytochrome c oxidase, 41.3 1.3E+02 0.0027 25.4 6.4 46 497-542 68-113 (149)
447 KOG4279 Serine/threonine prote 41.2 1.3E+02 0.0028 33.7 8.3 97 579-680 201-318 (1226)
448 PF09477 Type_III_YscG: Bacter 40.2 2.1E+02 0.0045 23.4 9.3 52 556-609 48-99 (116)
449 PRK08691 DNA polymerase III su 39.8 2.2E+02 0.0048 32.4 10.2 97 311-410 181-279 (709)
450 cd00280 TRFH Telomeric Repeat 39.8 1.8E+02 0.0038 26.5 7.6 28 656-683 117-144 (200)
451 smart00386 HAT HAT (Half-A-TPR 39.1 54 0.0012 19.1 3.4 27 697-725 1-27 (33)
452 PRK14962 DNA polymerase III su 39.0 5.5E+02 0.012 28.0 19.6 65 380-445 248-318 (472)
453 KOG1308 Hsp70-interacting prot 39.0 40 0.00086 33.8 3.9 86 627-715 127-214 (377)
454 PF10516 SHNi-TPR: SHNi-TPR; 38.5 71 0.0015 20.3 3.7 28 720-747 2-29 (38)
455 COG5159 RPN6 26S proteasome re 38.1 4E+02 0.0087 26.2 19.5 34 382-415 9-42 (421)
456 COG5108 RPO41 Mitochondrial DN 37.8 1.7E+02 0.0037 32.3 8.5 93 335-439 33-131 (1117)
457 KOG4507 Uncharacterized conser 37.6 2.7E+02 0.0058 30.5 9.7 62 68-130 208-272 (886)
458 PRK14958 DNA polymerase III su 37.3 3.3E+02 0.0072 30.0 11.1 95 314-411 184-280 (509)
459 PF11663 Toxin_YhaV: Toxin wit 37.1 41 0.00089 28.6 3.2 34 589-624 105-138 (140)
460 PF15469 Sec5: Exocyst complex 37.0 3.3E+02 0.0072 24.9 11.3 48 590-643 68-115 (182)
461 COG2912 Uncharacterized conser 36.9 2.5E+02 0.0053 27.5 8.8 62 685-748 183-244 (269)
462 PRK10564 maltose regulon perip 36.9 64 0.0014 31.9 5.0 41 581-621 259-299 (303)
463 PF05308 Mito_fiss_reg: Mitoch 36.8 26 0.00057 33.8 2.4 11 86-96 237-247 (253)
464 KOG0687 26S proteasome regulat 35.9 2.9E+02 0.0062 27.8 9.0 136 609-746 65-208 (393)
465 PF04762 IKI3: IKI3 family; I 35.6 8.6E+02 0.019 29.3 16.1 101 616-744 814-926 (928)
466 KOG2391 Vacuolar sorting prote 35.5 2.7E+02 0.0058 28.0 8.8 48 106-154 298-345 (365)
467 PF09670 Cas_Cas02710: CRISPR- 35.5 4.2E+02 0.0092 27.8 11.2 126 586-713 138-271 (379)
468 PF11846 DUF3366: Domain of un 35.4 1.3E+02 0.0029 27.8 6.9 31 577-607 142-172 (193)
469 KOG2471 TPR repeat-containing 35.1 6E+02 0.013 27.3 14.8 315 307-661 30-380 (696)
470 PHA02875 ankyrin repeat protei 34.9 5.8E+02 0.013 27.1 12.8 194 119-350 11-219 (413)
471 KOG2396 HAT (Half-A-TPR) repea 34.7 6.2E+02 0.013 27.3 36.6 97 569-668 449-548 (568)
472 COG5108 RPO41 Mitochondrial DN 34.7 2.2E+02 0.0047 31.6 8.7 25 231-255 33-57 (1117)
473 KOG2062 26S proteasome regulat 34.5 7.4E+02 0.016 28.2 35.5 203 558-785 511-721 (929)
474 PF11663 Toxin_YhaV: Toxin wit 34.2 20 0.00044 30.3 1.0 36 659-694 104-139 (140)
475 PF14669 Asp_Glu_race_2: Putat 34.1 3.8E+02 0.0082 24.7 14.6 101 290-401 103-206 (233)
476 smart00777 Mad3_BUB1_I Mad3/BU 34.1 2.9E+02 0.0064 23.4 8.8 41 633-674 82-123 (125)
477 PF02228 Gag_p19: Major core p 34.0 13 0.00028 27.4 -0.1 29 69-98 61-89 (92)
478 COG5187 RPN7 26S proteasome re 33.9 2.4E+02 0.0052 27.7 8.0 146 599-746 58-219 (412)
479 KOG3824 Huntingtin interacting 33.7 79 0.0017 31.1 4.9 61 660-722 126-187 (472)
480 KOG1498 26S proteasome regulat 33.6 5.7E+02 0.012 26.6 19.3 192 546-765 50-258 (439)
481 KOG2908 26S proteasome regulat 33.5 3.8E+02 0.0083 27.2 9.5 69 553-621 80-163 (380)
482 KOG0037 Ca2+-binding protein, 33.5 4.1E+02 0.0089 25.0 11.9 76 68-155 91-172 (221)
483 PRK12798 chemotaxis protein; R 32.3 6.2E+02 0.014 26.7 19.8 189 554-749 87-287 (421)
484 PF12862 Apc5: Anaphase-promot 32.1 2.4E+02 0.0052 22.3 6.9 18 624-641 51-68 (94)
485 PRK07003 DNA polymerase III su 32.0 4.8E+02 0.01 30.3 11.2 95 313-410 183-279 (830)
486 PF11817 Foie-gras_1: Foie gra 31.9 1.5E+02 0.0033 28.9 6.9 15 690-704 225-239 (247)
487 COG4976 Predicted methyltransf 31.8 87 0.0019 29.5 4.6 57 693-751 5-61 (287)
488 COG5187 RPN7 26S proteasome re 31.6 5.2E+02 0.011 25.6 11.1 100 614-713 115-222 (412)
489 PF06957 COPI_C: Coatomer (COP 30.9 3.2E+02 0.0069 29.0 9.2 110 589-716 214-333 (422)
490 PF00244 14-3-3: 14-3-3 protei 30.5 5E+02 0.011 25.1 10.0 160 484-643 7-198 (236)
491 KOG2659 LisH motif-containing 30.3 3.4E+02 0.0075 25.8 8.3 91 582-675 29-128 (228)
492 PRK14951 DNA polymerase III su 29.9 3.9E+02 0.0084 30.2 10.3 100 311-413 186-287 (618)
493 PRK13342 recombination factor 29.8 7.1E+02 0.015 26.5 17.5 165 393-574 154-331 (413)
494 KOG1114 Tripeptidyl peptidase 28.4 1E+03 0.023 28.1 14.5 184 462-664 1092-1281(1304)
495 KOG0545 Aryl-hydrocarbon recep 28.3 5.5E+02 0.012 24.8 10.9 107 589-714 188-295 (329)
496 PF09986 DUF2225: Uncharacteri 27.9 5.3E+02 0.011 24.4 10.1 90 624-713 87-195 (214)
497 PF11817 Foie-gras_1: Foie gra 27.8 3.3E+02 0.007 26.5 8.4 80 630-712 161-247 (247)
498 PF06957 COPI_C: Coatomer (COP 27.8 7.6E+02 0.017 26.3 14.2 161 449-628 122-350 (422)
499 PRK06645 DNA polymerase III su 27.4 4.9E+02 0.011 28.6 10.3 98 309-409 188-290 (507)
500 PRK00440 rfc replication facto 27.3 6.6E+02 0.014 25.3 15.7 149 309-460 162-318 (319)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.3e-104 Score=916.60 Aligned_cols=706 Identities=33% Similarity=0.591 Sum_probs=686.7
Q ss_pred CCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHh
Q 046631 66 TRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVY 145 (813)
Q Consensus 66 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (813)
..++..++|.++.++++.|++++|..+|+.|.+.| ..|+..+|..++.+|.+.+.++.|.++|..+.+.+..++..++
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELR--VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHH
Confidence 45677889999999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 046631 146 NSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPS 225 (813)
Q Consensus 146 ~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 225 (813)
|+|+.+|+++ |+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||
T Consensus 125 n~li~~~~~~------------------g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd 186 (857)
T PLN03077 125 NAMLSMFVRF------------------GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD 186 (857)
T ss_pred HHHHHHHHhC------------------CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHH
Q 046631 226 TISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYV 305 (813)
Q Consensus 226 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 305 (813)
..||+.++++|+..+++..+.+++..+.+.|.. ||..++|+|+.+|+++|++++|.++|++|+++|+++||++|.+|+
T Consensus 187 ~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~ 264 (857)
T PLN03077 187 VYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE--LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF 264 (857)
T ss_pred hhHHHHHHHHhCCccchhhHHHHHHHHHHcCCC--cccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 999999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchhhhhccC-------------
Q 046631 306 QNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNAV------------- 371 (813)
Q Consensus 306 ~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~------------- 371 (813)
+.|++++|+++| ..|...|+.||..||+.++.+|++.|+.+.|.+++..+.+ |+..+ ..+.+++
T Consensus 265 ~~g~~~eAl~lf-~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d-~~~~n~Li~~y~k~g~~~~A 342 (857)
T PLN03077 265 ENGECLEGLELF-FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD-VSVCNSLIQMYLSLGSWGEA 342 (857)
T ss_pred hCCCHHHHHHHH-HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc-hHHHHHHHHHHHhcCCHHHH
Confidence 999999999999 8899999999999999999999999999999999999999 77666 5444444
Q ss_pred -------CCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 046631 372 -------IERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHF 444 (813)
Q Consensus 372 -------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 444 (813)
..||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.+
T Consensus 343 ~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred HHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 046631 445 E-GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPAC 523 (813)
Q Consensus 445 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 523 (813)
+ .++++|+++|+++|++++|.++|++|. ++|+++||++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSAC 499 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHH
Confidence 9 999999999999999999999999999 78999999999999999999999999999986 5999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 046631 524 NPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFR 603 (813)
Q Consensus 524 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 603 (813)
++.|+++.+.+++..+.+.|+.++..++|+||++|+++|++++|.++|+++ .+|..+||+||.+|+++|+.++|+++|+
T Consensus 500 ~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChH
Q 046631 604 SMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVL 683 (813)
Q Consensus 604 ~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 683 (813)
+|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|+..|+..
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~ 658 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPA 658 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHH
Confidence 99999999999999999999999999999999999999777999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECC
Q 046631 684 EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGG 763 (813)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 763 (813)
+|++|+.+|+.+|+.+.++.+.+++++++|++ +.+|++|+++|+..|+|++|.++++.|+++|++++||+|||++++
T Consensus 659 -~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~--~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 659 -VWGALLNACRIHRHVELGELAAQHIFELDPNS--VGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--cchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 99999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCCccCCC
Q 046631 764 YVNRFASKDQEHPQSHKIYEMLERLAMEMRNAGNKTIQN 802 (813)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~c~ 802 (813)
.+|.|..||.+||+.++||.+|+.|..+|++.||.++-.
T Consensus 736 ~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 736 KVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred EEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 999999999999999999999999999999999987643
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-80 Score=718.72 Aligned_cols=595 Identities=27% Similarity=0.439 Sum_probs=550.4
Q ss_pred ccccccCCCCCCCCchhhhHHHHHhhc-CCcchHHHhhhcCCCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC
Q 046631 26 QIHSLSPPIPKLKTPTIRSRLSKICQE-GRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTS 104 (813)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 104 (813)
++|..+.+.+..++..+++.++..|.+ |+++.|+++|++|+.||+++||++|.+|++.|++++|+++|++|...| ..
T Consensus 107 ~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g--~~ 184 (857)
T PLN03077 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG--VR 184 (857)
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CC
Confidence 445555566777888899999999999 999999999999999999999999999999999999999999999999 99
Q ss_pred CCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHc
Q 046631 105 CDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFD 184 (813)
Q Consensus 105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~ 184 (813)
||..||+.++.+|+..+++..+.++|..+.+.|+.||..++|+||.+|+++ |+++.|.++|+
T Consensus 185 Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~------------------g~~~~A~~lf~ 246 (857)
T PLN03077 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC------------------GDVVSARLVFD 246 (857)
T ss_pred CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC------------------CCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHH
Q 046631 185 TMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLF 264 (813)
Q Consensus 185 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 264 (813)
+|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..+.+.|.. ||..
T Consensus 247 ~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~--~d~~ 324 (857)
T PLN03077 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA--VDVS 324 (857)
T ss_pred cCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc--cchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccC
Q 046631 265 VASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQ 344 (813)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 344 (813)
+||+|+.+|+++|++++|.++|++|..+|+++||++|.+|++.|++++|+++| +.|...|+.||..||+.++.+|++.|
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf-~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETY-ALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHH-HHHHHhCCCCCceeHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999 88999999999999999999999999
Q ss_pred cchHHHHHHHHHHH-hcccchhhhhccC--------------------CCCCcchHHHHHHHHHHCCCcHHHHHHHHHHH
Q 046631 345 ELDLGQQLHAYIIK-NFVALPVIVLNAV--------------------IERDVVSWNTMISAFVQNGLDDEGLMLVYEMQ 403 (813)
Q Consensus 345 ~~~~a~~~~~~~~~-~~~~~~~~~~~~~--------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (813)
+++.|.++++.+.+ |+..+ ..+.+++ ..+|.++||++|.+|++.|+.++|+.+|++|.
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~-~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISY-VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999 76554 3333333 67899999999999999999999999999998
Q ss_pred HCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHH
Q 046631 404 KQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWN 482 (813)
Q Consensus 404 ~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 482 (813)
. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++ .++++|+++|+++|++++|.++|+.+ .||.++||
T Consensus 483 ~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n 558 (857)
T PLN03077 483 L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWN 558 (857)
T ss_pred h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHH
Confidence 6 5899999999999999999999999999999999999999 88999999999999999999999988 68999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHhc
Q 046631 483 AMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSI-RYLLDQNVFVGTSLIDMYSKS 561 (813)
Q Consensus 483 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~ 561 (813)
+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|. +.|+.|+..+|++++++|++.
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~ 638 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999998 679999999999999999999
Q ss_pred CCHHHHHHHHhhCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHH
Q 046631 562 GVINYAANVFAKIP-EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA-ITFVAVLSACSYAGLVDEGLQIFDL 639 (813)
Q Consensus 562 g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~ 639 (813)
|++++|.+++++|. +||..+|++|+.+|..+|+.+.+....+++.+ +.|+. ..|..+...|+..|++++|.++.+.
T Consensus 639 G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 639 GKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 99999999999986 78888888888888888888888888888877 45554 4566666788888888888888888
Q ss_pred HHHhcCCCCChh
Q 046631 640 MQQEYKIQPSTE 651 (813)
Q Consensus 640 ~~~~~~~~p~~~ 651 (813)
|.+. |+.+++.
T Consensus 717 M~~~-g~~k~~g 727 (857)
T PLN03077 717 MREN-GLTVDPG 727 (857)
T ss_pred HHHc-CCCCCCC
Confidence 8877 8877643
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.6e-77 Score=675.04 Aligned_cols=525 Identities=31% Similarity=0.539 Sum_probs=484.0
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHH
Q 046631 188 RRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMG-IRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVA 266 (813)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 266 (813)
+++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.+++..+.+.|+. ||..++
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~--~~~~~~ 161 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE--PDQYMM 161 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--cchHHH
Confidence 4577899999999999999999999999998864 7899999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcc
Q 046631 267 SSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQEL 346 (813)
Q Consensus 267 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 346 (813)
|.|+.+|+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++| +.|...|
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf-~~M~~~g--------------------- 219 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF-REMWEDG--------------------- 219 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHH-HHHHHhC---------------------
Confidence 999999999999999999999998888888888888888888888887777 5555444
Q ss_pred hHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCC
Q 046631 347 DLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRN 426 (813)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 426 (813)
+.||..||+.++.+|+..|.
T Consensus 220 ------------------------------------------------------------~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 220 ------------------------------------------------------------SDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred ------------------------------------------------------------CCCChhhHHHHHHHHhcCCc
Confidence 44444444444444444444
Q ss_pred hHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 046631 427 QDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQML 505 (813)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 505 (813)
.+.+.+++..+.+.|..++ .++++|+++|+++|++++|.++|++|. .+|+++||+||.+|++.|++++|+++|++|.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--EKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5555555555555555555 555778899999999999999999998 7899999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHH
Q 046631 506 EHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTM 585 (813)
Q Consensus 506 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 585 (813)
+.|+.||..||++++.+|++.|+++.|.++|..|.+.|+.||..+|++||++|+++|++++|.++|++|.++|+.+||+|
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~l 397 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNAL 397 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC
Q 046631 586 ILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGK 665 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 665 (813)
|.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|+
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 666 VVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 666 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
+++|.+++++|+..|+.. +|++|+.+|+.+|+.+.|+.+++++++++|++ ...|..|+++|++.|+|++|.+++++|
T Consensus 478 ~~eA~~~~~~~~~~p~~~-~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~--~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 478 LDEAYAMIRRAPFKPTVN-MWAALLTACRIHKNLELGRLAAEKLYGMGPEK--LNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC--CcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999888 99999999999999999999999999999998 889999999999999999999999999
Q ss_pred HHCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCCccCC
Q 046631 746 RERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAGNKTIQ 801 (813)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~c 801 (813)
+++|+++.||+||+++++.+|.|.+||..||+..+++.++.++..+|++.||.|+-
T Consensus 555 ~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 555 KRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred HHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999998763
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-66 Score=587.49 Aligned_cols=536 Identities=15% Similarity=0.165 Sum_probs=486.2
Q ss_pred CCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCC-CCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHH
Q 046631 103 TSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFS-NPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCK 181 (813)
Q Consensus 103 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~ 181 (813)
..++...|..++..|++.|+++.|.++|+.|.+.|+ .++..+++.++..|.+. |.+++|.+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~------------------g~~~eAl~ 427 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ------------------RAVKEAFR 427 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC------------------CCHHHHHH
Confidence 455788899999999999999999999999999985 56778888999999999 99999999
Q ss_pred HHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCC
Q 046631 182 VFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVN 261 (813)
Q Consensus 182 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 261 (813)
+|+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+. |
T Consensus 428 lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~--P 505 (1060)
T PLN03218 428 FAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE--A 505 (1060)
T ss_pred HHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHh--CCCCCChhhHHH
Q 046631 262 DLFVASSAIFMYAELGCFDFARKIFDNCL----ERNTEVWNTMIGGYVQNNHPVEAIELFVQVLEL--DEIVFDDVTFLS 335 (813)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~--~g~~p~~~t~~~ 335 (813)
|..+|+.+|.+|++.|++++|.++|++|. .||..+||.||.+|++.|++++|.++| ..|.. .|+.||..||++
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf-~eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL-AEMKAETHPIDPDHITVGA 584 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHhcCCCCCcHHHHHH
Confidence 99999999999999999999999999994 479999999999999999999999999 66654 689999999999
Q ss_pred HHHHhcccCcchHHHHHHHHHHH-hcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHH
Q 046631 336 ALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTV 414 (813)
Q Consensus 336 ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 414 (813)
++.+|++.|+++.|.++|+.|.+ + ..|+..+||.+|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~g------------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYN------------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999998 6 5688999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHHHHhhcC--CCCCChhhHHHHHHHHHhC
Q 046631 415 TALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKND--SGDRDQATWNAMIAGYTQN 491 (813)
Q Consensus 415 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~li~~~~~~ 491 (813)
+.++.+|++.|+++.|.++++.|.+.|+.++ .+++.|+.+|+++|++++|.++|++|. +..||..+||.||.+|++.
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999 999999999999999999999999984 3479999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 046631 492 GLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVF 571 (813)
Q Consensus 492 ~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 571 (813)
|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.++|.+|.+.|+.||..+|++++.+|.+ ++++|.++.
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~ 810 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALG 810 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999976432 355555443
Q ss_pred hhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChh
Q 046631 572 AKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTE 651 (813)
Q Consensus 572 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 651 (813)
+.+. .|+. .......+..+.|+.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|... +..|+..
T Consensus 811 ~~v~-----~f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~ 883 (1060)
T PLN03218 811 EPVV-----SFDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQS 883 (1060)
T ss_pred hhhh-----hhhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchh
Confidence 3222 1110 1111122334679999999999999999999999998888888899888888888666 7777899
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhCcCCCh
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKELGEEGNV 682 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 682 (813)
+|++|++++++. .++|..++++|...+-.
T Consensus 884 ~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 884 NLSTLVDGFGEY--DPRAFSLLEEAASLGVV 912 (1060)
T ss_pred hhHHHHHhhccC--hHHHHHHHHHHHHcCCC
Confidence 999999998543 47899999999655533
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.1e-67 Score=590.23 Aligned_cols=476 Identities=25% Similarity=0.407 Sum_probs=411.4
Q ss_pred CCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHh
Q 046631 66 TRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVY 145 (813)
Q Consensus 66 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (813)
..++..+|+.+|.++.+.|++.+|+++|+.|...++ ..||..+|+.++.+|++.++++.|.++|..|.+.|+.||..+|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~-~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCP-FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 346778999999999999999999999999987653 5689999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 046631 146 NSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPS 225 (813)
Q Consensus 146 ~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 225 (813)
+.|+.+|+++ |+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 162 n~Li~~y~k~------------------g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~ 223 (697)
T PLN03081 162 NRVLLMHVKC------------------GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223 (697)
T ss_pred HHHHHHHhcC------------------CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC
Confidence 9999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHH
Q 046631 226 TISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYV 305 (813)
Q Consensus 226 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 305 (813)
..||+.++.+|+..|..+.+.+++..+.+.|.. +|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+
T Consensus 224 ~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~--~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~ 301 (697)
T PLN03081 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV--GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA 301 (697)
T ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC--ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHH
Confidence 999999999999999999999999999999998 999999999999999999999999999998888888888888888
Q ss_pred hCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHH
Q 046631 306 QNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISA 385 (813)
Q Consensus 306 ~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 385 (813)
+.|++++|+++| +.|...|+.||.. +|+.++.+
T Consensus 302 ~~g~~~eA~~lf-~~M~~~g~~pd~~----------------------------------------------t~~~ll~a 334 (697)
T PLN03081 302 LHGYSEEALCLY-YEMRDSGVSIDQF----------------------------------------------TFSIMIRI 334 (697)
T ss_pred hCCCHHHHHHHH-HHHHHcCCCCCHH----------------------------------------------HHHHHHHH
Confidence 888888888887 6666555444333 33334444
Q ss_pred HHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHH
Q 046631 386 FVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTAR 465 (813)
Q Consensus 386 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 465 (813)
|++.|++++|.+++.+|.+.|+.||..+| ++|+++|+++|++++|.
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~----------------------------------~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVAN----------------------------------TALVDLYSKWGRMEDAR 380 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeeh----------------------------------HHHHHHHHHCCCHHHHH
Confidence 44445555555555555556655555555 66888999999999999
Q ss_pred HHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHH-cCC
Q 046631 466 QIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIR-YLL 544 (813)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~ 544 (813)
++|++|. .||+.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+
T Consensus 381 ~vf~~m~--~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 381 NVFDRMP--RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHHHhCC--CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 9999998 7999999999999999999999999999999999999999999999999999999999999999986 599
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 046631 545 DQNVFVGTSLIDMYSKSGVINYAANVFAKIP-EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLS 622 (813)
Q Consensus 545 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 622 (813)
.|+..+|++++++|++.|++++|.+++++|. +|+..+|++|+.+|..+|+++.|..+++++.+ +.|+ ..+|..|+.
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~ 536 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLN 536 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHH
Confidence 9999999999999999999999999988876 56777777777777777777777777777654 4443 446667777
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCC
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQP 648 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p 648 (813)
.|++.|++++|.++++.|.+. |+.+
T Consensus 537 ~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 537 LYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 777777777777777777666 6543
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.6e-64 Score=568.54 Aligned_cols=511 Identities=13% Similarity=0.146 Sum_probs=300.7
Q ss_pred CCcchHHHhhhcCCCCCcc-----hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHH
Q 046631 53 GRPHLARQLFDSITRPTTV-----IWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGK 127 (813)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (813)
|++++|.++|++|..++.. .++.++..|.+.|..++|+.+|+.| ..||..+|+.++.+|++.|+++.|.
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M------~~pd~~Tyn~LL~a~~k~g~~e~A~ 457 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI------RNPTLSTFNMLMSVCASSQDIDGAL 457 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc------CCCCHHHHHHHHHHHHhCcCHHHHH
Confidence 5555555555555443332 2334444455555555555555555 2245555555555555555555555
Q ss_pred HHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccC----CCCcccHHHHHHHHHc
Q 046631 128 AVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMR----RRNVVAWNTIVSWYVK 203 (813)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~ 203 (813)
++|+.|.+.|+.||..+|++||.+|+++ |+++.|.++|++|. .||..+||+||.+|++
T Consensus 458 ~lf~~M~~~Gl~pD~~tynsLI~~y~k~------------------G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 458 RVLRLVQEAGLKADCKLYTTLISTCAKS------------------GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhC------------------cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5555555555555555555555555555 55555555555554 3455555555555555
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHH--hCCCCCCcHHHHHHHHHHHHhcCChHH
Q 046631 204 TERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVK--LGSEYVNDLFVASSAIFMYAELGCFDF 281 (813)
Q Consensus 204 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~~~li~~~~~~g~~~~ 281 (813)
.|++++|+++|+.|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+ .++. ||..+|++||.+|+++|++++
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~--PD~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID--PDHITVGALMKACANAGQVDR 597 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHCCCHHH
Confidence 555555555555555555555555555555555555555555555555544 2333 555555555555555555555
Q ss_pred HHHHHhhcCC----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHH
Q 046631 282 ARKIFDNCLE----RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYII 357 (813)
Q Consensus 282 A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 357 (813)
|.++|++|.+ ++..+||++|.+|++.|++++|+++| +.|...|+.||..||+.++.+|++.|+++.|.+++..|.
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf-~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY-DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5555555533 23455555555555555555555555 555555555555555555555555555555555555554
Q ss_pred H-hcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHH
Q 046631 358 K-NFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAY 436 (813)
Q Consensus 358 ~-~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~ 436 (813)
+ | ..||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 677 k~G------------~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN--------------------- 723 (1060)
T PLN03218 677 KQG------------IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN--------------------- 723 (1060)
T ss_pred HcC------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH---------------------
Confidence 4 3 23445555555555555555555555555555555555555554
Q ss_pred HHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcC--CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 046631 437 LLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKND--SGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVV 514 (813)
Q Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 514 (813)
.|+.+|++.|++++|.++|++|. +..||..+|+.+|.+|++.|++++|.++|.+|.+.|+.||..
T Consensus 724 -------------~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ 790 (1060)
T PLN03218 724 -------------ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790 (1060)
T ss_pred -------------HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 45555555555555555555543 226888888888888888899999999999998888889988
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCHhHHHHHHHHHH
Q 046631 515 TIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP----EKNSVTYTTMILGYG 590 (813)
Q Consensus 515 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 590 (813)
+|+.++..|.+ .++++..+.+.+.... ....+...+..+.|..+|++|. .||..+|+.++.+++
T Consensus 791 tynsLIglc~~--~y~ka~~l~~~v~~f~----------~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~ 858 (1060)
T PLN03218 791 MCRCITGLCLR--RFEKACALGEPVVSFD----------SGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQ 858 (1060)
T ss_pred HHHHHHHHHHH--HHHHHhhhhhhhhhhh----------ccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Confidence 88888866542 3444444333222110 0001111223456777777776 367777777777777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChh
Q 046631 591 QHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTE 651 (813)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 651 (813)
..+..+.+..++++|...+..|+..+|++++++|.+. .++|..+|++|.+. |+.|+..
T Consensus 859 ~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~-Gi~p~~~ 916 (1060)
T PLN03218 859 LPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL-GVVPSVS 916 (1060)
T ss_pred ccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc-CCCCCcc
Confidence 7777777777777777777777778888888877432 35788888888777 8887753
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-36 Score=363.46 Aligned_cols=670 Identities=10% Similarity=-0.003 Sum_probs=325.8
Q ss_pred CchhhhHHHHHhhc-CCcchHHHhhhcCC---CCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHH
Q 046631 39 TPTIRSRLSKICQE-GRPHLARQLFDSIT---RPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVL 114 (813)
Q Consensus 39 ~~~~~~~l~~~~~~-g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll 114 (813)
+...+..+...+.. |+++.|...|+... +.++.++..++..+...|++++|...++.+.+.. +. +...+....
T Consensus 192 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~~~ 268 (899)
T TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA--PN-SPLAHYLKA 268 (899)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CchHHHHHH
Confidence 34455555666666 99999998888753 3455677778888888899999999988888765 33 333444444
Q ss_pred HHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCC---CCc
Q 046631 115 KACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRR---RNV 191 (813)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~---~~~ 191 (813)
..+...|+++.|...++.+.+.... +...+..+...+... |+++.|...|+...+ .+.
T Consensus 269 ~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~------------------g~~~~A~~~~~~~~~~~p~~~ 329 (899)
T TIGR02917 269 LVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQL------------------GNLEQAYQYLNQILKYAPNSH 329 (899)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHc------------------CCHHHHHHHHHHHHHhCCCCh
Confidence 4556778888888888887776422 122233334445555 555555555554432 123
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 046631 192 VAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIF 271 (813)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 271 (813)
..+..+...+.+.|++++|+..++.+.+.. +.+...+..+...+...|++++|.++++.+.+..+. +...+..+..
T Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~ 405 (899)
T TIGR02917 330 QARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE---NAAARTQLGI 405 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHH
Confidence 344444455555555555555555554432 223334444555555555555555555555544422 3344444555
Q ss_pred HHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchH
Q 046631 272 MYAELGCFDFARKIFDNCLER---NTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDL 348 (813)
Q Consensus 272 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 348 (813)
.+...|+.++|.+.|+.+... +...+..++..+.+.|++++|+.++ +.+.. ..+.+..++..+...+...|+.+.
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA-KKLEK-KQPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHH-HHHHH-hCCCCcHHHHHHHHHHHhCCCHHH
Confidence 555555555555555544321 2233344444555555555555555 22221 122333444445555555555555
Q ss_pred HHHHHHHHHHhcccchhhhh----------------------ccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCC
Q 046631 349 GQQLHAYIIKNFVALPVIVL----------------------NAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQG 406 (813)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 406 (813)
|.+.+..+.+..+..+.... -...+.+..++..+...+.+.|+.++|..+++++.+.+
T Consensus 484 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55555544431000000000 00001223344444444444444444444444444332
Q ss_pred CCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHH
Q 046631 407 FMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMI 485 (813)
Q Consensus 407 ~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li 485 (813)
+.+...+..+...+...|+++.|..+++.+.+..+.....+..+...|.+.|++++|...|+.+....| +...+..+.
T Consensus 564 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 642 (899)
T TIGR02917 564 -PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA 642 (899)
T ss_pred -ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 222333344444444445555555444444443333234444444444455555555555444432223 333444444
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 046631 486 AGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVIN 565 (813)
Q Consensus 486 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 565 (813)
..|.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.+.. +.+...+..+...|.+.|+++
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHH
Confidence 44444555555555554444421 1223344444444444455555555544444433 223334444444445555555
Q ss_pred HHHHHHhhCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046631 566 YAANVFAKIP--EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQE 643 (813)
Q Consensus 566 ~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 643 (813)
+|.+.|+.+. .|+..++..++.++...|++++|.+.++++.+.. +.+...+..+...|...|++++|.++|+++.+.
T Consensus 721 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 721 AAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 5555554443 2333444444444555555555555555544431 223334444444444555555555555554432
Q ss_pred cCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchh
Q 046631 644 YKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGY 721 (813)
Q Consensus 644 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 721 (813)
.| +..++..++.++.+.|+ ++|+++++++ ...|+.+.++..++..+...|++++|...++++++.+|.+ +..
T Consensus 800 ---~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~ 873 (899)
T TIGR02917 800 ---APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA--AAI 873 (899)
T ss_pred ---CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--hHH
Confidence 22 24444455555555555 4455554443 2233333344445555555555555555555555555544 455
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 722 HVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 722 ~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
+..++.+|.+.|++++|.+++++|.
T Consensus 874 ~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 874 RYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5555555555555555555555443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8e-36 Score=356.61 Aligned_cols=659 Identities=13% Similarity=0.041 Sum_probs=461.0
Q ss_pred hhhhHHHHHhhc-CCcchHHHhhhcCC---CCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHH
Q 046631 41 TIRSRLSKICQE-GRPHLARQLFDSIT---RPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKA 116 (813)
Q Consensus 41 ~~~~~l~~~~~~-g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~ 116 (813)
..+..+...+.. |++++|...++.+. +.+...|..+...+...|++++|...|++..+.+ +. +..++..+...
T Consensus 160 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~-~~~~~~~~~~~ 236 (899)
T TIGR02917 160 YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR--PN-NPAVLLALATI 236 (899)
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHH
Confidence 344555566666 99999999998763 3456678888889999999999999999998876 43 67788889999
Q ss_pred hhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCCC---ccc
Q 046631 117 CAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRN---VVA 193 (813)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~---~~~ 193 (813)
+...|+++.|...++.+.+.... +..........+... |++++|.+.|+.+.+.+ ...
T Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------~~~~~A~~~~~~~l~~~~~~~~~ 297 (899)
T TIGR02917 237 LIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQK------------------KNYEDARETLQDALKSAPEYLPA 297 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHh------------------cCHHHHHHHHHHHHHhCCCchhH
Confidence 99999999999999999887533 223333333334455 99999999999876533 234
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 046631 194 WNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMY 273 (813)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 273 (813)
+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+..+.+..+. +...+..+...|
T Consensus 298 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~ 373 (899)
T TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD---DPAALSLLGEAY 373 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHH
Confidence 4555667888999999999999998753 234556777788889999999999999999887753 778889999999
Q ss_pred HhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHH
Q 046631 274 AELGCFDFARKIFDNCLE---RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQ 350 (813)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 350 (813)
.+.|++++|.+.|+++.+ .+...|..+...+...|++++|++.|.+.+.... ........++..+.+.|+.+.|.
T Consensus 374 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 451 (899)
T TIGR02917 374 LALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP--ELGRADLLLILSYLRSGQFDKAL 451 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC--cchhhHHHHHHHHHhcCCHHHHH
Confidence 999999999999998754 2566788889999999999999999955554332 12334556778889999999999
Q ss_pred HHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHH
Q 046631 351 QLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVG 430 (813)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a 430 (813)
.++..+.+..+ .+..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+++.|
T Consensus 452 ~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 452 AAAKKLEKKQP------------DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHHHHHHHhCC------------CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999887422 234455556666666666666666666555432 12223334444444555555555
Q ss_pred HHHHHHHHHhCCCCc----------------------------------chHHHHHHHHHhcCCHHHHHHHHhhcCCCCC
Q 046631 431 KQTHAYLLRHGIHFE----------------------------------GMESYLIDMYAKSGLIKTARQIFEKNDSGDR 476 (813)
Q Consensus 431 ~~~~~~~~~~~~~~~----------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 476 (813)
...++.+.+..+... .....++..|.+.|++++|..+++.+....|
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 519 IQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 555555544443322 3344455555555555555555555443333
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046631 477 -DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLI 555 (813)
Q Consensus 477 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 555 (813)
+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..++
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 44455555566666666666666666555432 2233445555555555666666666666555432 22345556666
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 046631 556 DMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDE 632 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~ 632 (813)
..+...|++++|.++++.+.+ .+...+..+...+...|++++|+..|+++... .|+..++..+..++.+.|++++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHH
Confidence 666666666666666666542 24556666677777777777777777777763 4555666667777777888888
Q ss_pred HHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 046631 633 GLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLL 710 (813)
Q Consensus 633 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 710 (813)
|.+.++.+.+. .| +...+..++.+|.+.|++++|.+.++++ ...|+.+.+++.+++.+...|+ .+|+..+++++
T Consensus 755 A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 755 AVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 88877777754 34 4777888888888888888888888876 3445555578888888888888 77888888888
Q ss_pred cCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 711 EMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 711 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
+..|++ +..+..++.+|...|++++|.++++++.+.++
T Consensus 831 ~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 831 KLAPNI--PAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred hhCCCC--cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888887 78888888888888888888888888886553
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=6.2e-26 Score=270.05 Aligned_cols=628 Identities=12% Similarity=0.026 Sum_probs=424.3
Q ss_pred HHHhhc-CCcchHHHhhhcCC---CCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCccc-------------
Q 046631 47 SKICQE-GRPHLARQLFDSIT---RPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYT------------- 109 (813)
Q Consensus 47 ~~~~~~-g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~------------- 109 (813)
.+++.. ++.+.|.+.++++. ..|+..+..++..+.+.|+.++|...++++.+.. |. +...
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~-~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PD-SNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CC-ChHHHHHHHHHHhcCCc
Confidence 344444 99999999998764 3567788889999999999999999999999876 32 2222
Q ss_pred ---HHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHH-HHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcc
Q 046631 110 ---YSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLL-NMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDT 185 (813)
Q Consensus 110 ---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~ 185 (813)
...+...+...|++++|.+.++.+.+.. +++........ ...... |+.++|++.+++
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~------------------g~~~~A~~~L~~ 172 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLP------------------AQRPEAINQLQR 172 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCC------------------ccHHHHHHHHHH
Confidence 2333456788999999999999998764 23322111111 111223 899999999999
Q ss_pred cCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhh--------------------HHHHHHHhhCCCCh
Q 046631 186 MRR--R-NVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTIS--------------------FVNVFPALSSLGDY 242 (813)
Q Consensus 186 ~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--------------------~~~ll~~~~~~g~~ 242 (813)
+.+ | +...+..+...+...|+.++|++.|+++...... +... +...+..+-.....
T Consensus 173 ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~ 251 (1157)
T PRK11447 173 LNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSV 251 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHH
Confidence 875 3 4457788888899999999999999998763210 0000 11111111111122
Q ss_pred hHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHH
Q 046631 243 KSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLE--R-NTEVWNTMIGGYVQNNHPVEAIELFVQ 319 (813)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 319 (813)
..|...+....+.... |+.. ...+...+...|++++|+..|++..+ | +...+..+...|.+.|++++|+..|++
T Consensus 252 ~~A~~~L~~~~~~~~d--p~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~ 328 (1157)
T PRK11447 252 AAARSQLAEQQKQLAD--PAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEK 328 (1157)
T ss_pred HHHHHHHHHHHHhccC--cchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2333333333222211 2211 11223445556666666666665533 2 445555666666666666666666644
Q ss_pred HHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHH
Q 046631 320 VLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLV 399 (813)
Q Consensus 320 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 399 (813)
.+....-.+....+..++.. ............+.+.|++++|...|
T Consensus 329 Al~~~p~~~~~~~~~~ll~~----------------------------------~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 329 ALALDPHSSNRDKWESLLKV----------------------------------NRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred HHHhCCCccchhHHHHHHHh----------------------------------hhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44332211111111111000 00000112234567788888888888
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCC--
Q 046631 400 YEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRD-- 477 (813)
Q Consensus 400 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-- 477 (813)
++..+.. +.+...+..+...+...|++++|.+.++.+++..+........+...|. .++.++|...++.+....+.
T Consensus 375 ~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 375 QQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 8888763 2344556667777888888888888888888877665555556666664 45778888888776532221
Q ss_pred --------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCch
Q 046631 478 --------QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPN-VVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNV 548 (813)
Q Consensus 478 --------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 548 (813)
...+..+...+...|++++|++.|++.++. .|+ ...+..+...+...|+.++|...++.+.+.. +.+.
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~ 529 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDP 529 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCH
Confidence 123555677788899999999999998875 454 4566677888889999999999999887643 2244
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCC----CH---------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIPEK----NS---------VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI 615 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 615 (813)
..+..+...+...|+.++|...++.+... +. ..+..+...+...|+.++|+.+++. .+.+..
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~ 604 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTR 604 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCch
Confidence 44555556677889999999999987632 11 1223456778899999999999882 344556
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCChHHHHHHHHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNVLEIWGSLLGSC 693 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~ 693 (813)
.+..+...+...|++++|+..|+++.+. .|+ ...+..++.+|...|++++|++.++.+. ..|+.+.++..+..++
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~ 681 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW 681 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 7778888999999999999999999854 675 8899999999999999999999999874 4556666888899999
Q ss_pred HHhCCHHHHHHHHHHHhcCCCCCCC----chhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 694 RLHGHSELAEVVAKKLLEMDTRNSM----PGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 694 ~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
...|++++|...+++++...|++.. +..+..++.++...|++++|...+++...
T Consensus 682 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 682 AALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999998766410 13555679999999999999999998864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=6.3e-25 Score=261.46 Aligned_cols=609 Identities=9% Similarity=-0.028 Sum_probs=420.5
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcC
Q 046631 76 IIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTC 155 (813)
Q Consensus 76 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 155 (813)
.++.....++.+.|.+.++++.... |. +...+..++..+.+.|+.++|.+.++++.+.. |+...+..+...+...
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~--p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID--PN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhc
Confidence 5667778889999999999998876 44 67788888899999999999999999998875 3322221111111000
Q ss_pred CCchhhhhhhhcccccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHH
Q 046631 156 LSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTI-SFVNVFP 234 (813)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~ 234 (813)
.++....-.....+.+.|++++|++.|+.+.+.+ +|+.. .......
T Consensus 109 --------------------------------~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~ 155 (1157)
T PRK11447 109 --------------------------------TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRL 155 (1157)
T ss_pred --------------------------------CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHH
Confidence 0111122333344555566666666666655432 22211 1111111
Q ss_pred HhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCC---------------------
Q 046631 235 ALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERN--------------------- 293 (813)
Q Consensus 235 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------------------- 293 (813)
.....|+.++|...++.+.+..+. +...+..+...+...|+.++|+..++++....
T Consensus 156 ~~~~~g~~~~A~~~L~~ll~~~P~---~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~ 232 (1157)
T PRK11447 156 VAKLPAQRPEAINQLQRLNADYPG---NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSD 232 (1157)
T ss_pred HhhCCccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCCh
Confidence 122345666666666666665543 44455566666666666666666666553221
Q ss_pred --cchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccC
Q 046631 294 --TEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAV 371 (813)
Q Consensus 294 --~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 371 (813)
...+...+..+-.......|...+ .........|+... ...-..+...|++++|...++.+.+..
T Consensus 233 ~~~~~l~~~l~~~p~~~~~~~A~~~L-~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~----------- 299 (1157)
T PRK11447 233 ASVAALQKYLQVFSDGDSVAAARSQL-AEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN----------- 299 (1157)
T ss_pred hhHHHHHHHHHHCCCchHHHHHHHHH-HHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-----------
Confidence 111111222222222233444444 22222222232221 122345567889999999998888721
Q ss_pred CCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCC-CHhHH------------HHHHHHHhcCCChHHHHHHHHHHH
Q 046631 372 IERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMI-DSVTV------------TALLSAASNLRNQDVGKQTHAYLL 438 (813)
Q Consensus 372 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~------------~~ll~~~~~~~~~~~a~~~~~~~~ 438 (813)
+.+...+..+...|.+.|++++|+..|++..+..... ....+ ......+.+.|++++|...++.++
T Consensus 300 -P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 300 -PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2356788899999999999999999999988764221 11111 122345678999999999999999
Q ss_pred HhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-------
Q 046631 439 RHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVT------- 510 (813)
Q Consensus 439 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~------- 510 (813)
+..+........+...|...|++++|++.|++.....| +...+..+...|. .++.++|+.+++.+......
T Consensus 379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99876667777899999999999999999999876667 4556777777775 46789999988765432100
Q ss_pred -CCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHH
Q 046631 511 -PNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSVTYTTMI 586 (813)
Q Consensus 511 -p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 586 (813)
.....+..+...+...|++++|...++...+... -+..++..+...|.+.|++++|...|+++.+ | +...+..+.
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~a 536 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYG 536 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 0112344566677889999999999999988642 2566788899999999999999999998752 3 566666666
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 046631 587 LGYGQHGMSERALSLFRSMKGCGIEPDAI---------TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVA 657 (813)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 657 (813)
..+...++.++|+..++++......++.. .+..+...+...|+.++|..+++. ..++...+..+.
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La 610 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLA 610 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHH
Confidence 67788999999999998865432222221 233456678899999999998861 123577788899
Q ss_pred HHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcH
Q 046631 658 DMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWE 736 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~ 736 (813)
..+.+.|++++|++.++++ ...|+.+.++..++..+...|++++|+..++++++..|++ +..+..++.++...|+++
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~--~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS--LNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC--hHHHHHHHHHHHhCCCHH
Confidence 9999999999999999987 5578777899999999999999999999999999999998 888899999999999999
Q ss_pred HHHHHHHHHHHCC
Q 046631 737 NVDKVRKEMRERG 749 (813)
Q Consensus 737 ~A~~~~~~m~~~~ 749 (813)
+|.++++++.+..
T Consensus 689 eA~~~~~~al~~~ 701 (1157)
T PRK11447 689 AAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHhhhC
Confidence 9999999998654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=5e-23 Score=233.03 Aligned_cols=628 Identities=11% Similarity=-0.013 Sum_probs=387.0
Q ss_pred CCcchHHHhhhcCCC---CCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHH
Q 046631 53 GRPHLARQLFDSITR---PTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAV 129 (813)
Q Consensus 53 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 129 (813)
|++++|...|+.... .++.++..+.+.|.+.|+.++|...+++..+.. | +...|..++..+ ++.+.|..+
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P--~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--P--GDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--c--ccHHHHHHHHHh---ccChhHHHH
Confidence 666666666665432 234455666666666677777777776666654 2 222233323222 666666666
Q ss_pred HHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccC--CCC--cccHHHH-HHHHHcC
Q 046631 130 HCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMR--RRN--VVAWNTI-VSWYVKT 204 (813)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~--~~~--~~~~~~l-i~~~~~~ 204 (813)
++++.+.. +.+..++..+....+-. ..+.+.+.+.|.+.++ .. .++ ..+.... ...|.+.
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~-------------~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQ-------------NALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhcc-------------chhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHH
Confidence 66666653 22233333333320000 0000045555555555 22 122 2222333 5666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhC-CCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHH
Q 046631 205 ERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSS-LGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFAR 283 (813)
Q Consensus 205 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 283 (813)
|++++|++++.++.+.+.. +..-...+-.++.. .++ +.+..+++. ... .+..+...++..|.+.|+.++|.
T Consensus 196 ~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk--~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 196 KQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIF--TDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred hCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcc--cCHHHHHHHHHHHHHCCCHHHHH
Confidence 6666677777666665421 22223344444444 244 445444332 222 35666666666666666666666
Q ss_pred HHHhhcCC-----CCcchHHHHHHHHHhCCCch-HHHHHHHHHHHhCCCCCChh-hHHHHHHHhcccCcchHHHHHHHHH
Q 046631 284 KIFDNCLE-----RNTEVWNTMIGGYVQNNHPV-EAIELFVQVLELDEIVFDDV-TFLSALSAVSQLQELDLGQQLHAYI 356 (813)
Q Consensus 284 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~~-~A~~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~ 356 (813)
++++++.. +...+|--+ +.+.+... .|..-|.+. ..++.. ....++..+.+.++++.++++..
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 337 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTVQ-----FADNRQYVVGATLPVLLKEGQYDAAQKLLA-- 337 (987)
T ss_pred HHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhhh-----hHHHHHHHHHHHHHHHHhccHHHHHHHHhc--
Confidence 66666533 122233222 22222221 111111011 111111 11123455566666665554422
Q ss_pred HHhcccchhhhhccCCCCCcchHHHHHHHH--HHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHH
Q 046631 357 IKNFVALPVIVLNAVIERDVVSWNTMISAF--VQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTH 434 (813)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 434 (813)
..|.... ..+... ...+...++...+..|.+.. .-+....--+--.....|+.++|..++
T Consensus 338 ---------------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~ 399 (987)
T PRK09782 338 ---------------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLL 399 (987)
T ss_pred ---------------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 1122222 122222 23355666666666666541 113333333333455778888888888
Q ss_pred HHHHHhCC--CCc-chHHHHHHHHHhcCC---HHHHHHH-------------------------HhhcCCCC-C--Chhh
Q 046631 435 AYLLRHGI--HFE-GMESYLIDMYAKSGL---IKTARQI-------------------------FEKNDSGD-R--DQAT 480 (813)
Q Consensus 435 ~~~~~~~~--~~~-~~~~~l~~~~~~~g~---~~~A~~~-------------------------~~~~~~~~-~--~~~~ 480 (813)
........ ..+ .+..-++..|.+.+. ..++..+ +....... + +...
T Consensus 400 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a 479 (987)
T PRK09782 400 LQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA 479 (987)
T ss_pred HHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH
Confidence 87776311 112 455567777777765 2233222 22222222 2 4567
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046631 481 WNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSK 560 (813)
Q Consensus 481 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 560 (813)
|..+..++.. +++++|+..|.+.... .|+......+...+...|+.++|...++.+... .|+...+..+...+.+
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~ 554 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHH
Confidence 7888877776 8999999988888765 477655545556667899999999999987654 3344456677788899
Q ss_pred cCCHHHHHHHHhhCCCCCHh---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046631 561 SGVINYAANVFAKIPEKNSV---TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIF 637 (813)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 637 (813)
.|++++|...|+...+.++. .+..+...+...|++++|+..+++..+ ..|+...+..+..++.+.|+.++|...+
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999988753332 233333344456999999999999998 5678888999999999999999999999
Q ss_pred HHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 638 DLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 638 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
++.. .+.|+ ...+..++..+...|++++|++.+++. ...|+.+.++..+..++...|++++|+..++++++++|+
T Consensus 633 ~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 633 RAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9998 45786 888999999999999999999999986 567888889999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 716 NSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 716 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
+ +......+++.....+++.|.+.++....-++
T Consensus 710 ~--a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 710 Q--ALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred C--chhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 8 89999999999999999999998887765443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.3e-20 Score=213.58 Aligned_cols=610 Identities=9% Similarity=-0.035 Sum_probs=435.9
Q ss_pred hHHHHHHHH--hcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHH
Q 046631 72 IWNTIIIGF--VCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLL 149 (813)
Q Consensus 72 ~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (813)
++-.++.+. ...|++++|+..|++..+.. |. +..++..|..++...|+.++|...+++..+.. |+...+..++
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d--P~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~L 118 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV--PD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSL 118 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHH
Confidence 333444443 33499999999999999987 55 58889999999999999999999999998874 4444444433
Q ss_pred HHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCC--CC-cccHHHHHHH--------HHcCCChhHHHHHHHHHH
Q 046631 150 NMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRR--RN-VVAWNTIVSW--------YVKTERYVEAVRQFRMML 218 (813)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~--------~~~~g~~~~A~~l~~~m~ 218 (813)
.. . ++.++|..+++++.. |+ ...+..+... |.+. ++|.+.++ ..
T Consensus 119 a~---i------------------~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr 173 (987)
T PRK09782 119 AA---I------------------PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DA 173 (987)
T ss_pred HH---h------------------ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hh
Confidence 33 3 778889999999874 43 3444444444 5555 55555555 44
Q ss_pred HCCCCCCHhhHHHH-HHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHh-cCChHHHHHHHhhcCCCCcch
Q 046631 219 RMGIRPSTISFVNV-FPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAE-LGCFDFARKIFDNCLERNTEV 296 (813)
Q Consensus 219 ~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~ 296 (813)
.....|+....... .+.+...+++++|..++..+.+.++. +......|..+|.. .++ +.+..+++...+.+...
T Consensus 174 ~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl---~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l 249 (987)
T PRK09782 174 TFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL---SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQS 249 (987)
T ss_pred hhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHH
Confidence 43344445544554 88999999999999999999999865 56667777778888 477 99999987655668889
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhCCC-CCChhhHHHHHHHhcccCcchHHHHHHH-HHHHhcccchhhhhccCCCC
Q 046631 297 WNTMIGGYVQNNHPVEAIELFVQVLELDEI-VFDDVTFLSALSAVSQLQELDLGQQLHA-YIIKNFVALPVIVLNAVIER 374 (813)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~ 374 (813)
+..+...|.+.|+.++|..++ +.+...-. .|+..++...+.-+.... ..+..-+. .....
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L-~~~~~~~~~~~~~~~~~~~l~r~~~~~--~~~~~~~~~~~~~~--------------- 311 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYL-IENKPLFTTDAQEKSWLYLLSKYSANP--VQALANYTVQFADN--------------- 311 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHH-HhCcccccCCCccHHHHHHHHhccCch--hhhccchhhhhHHH---------------
Confidence 999999999999999999999 65544322 355655555543332221 11111000 00000
Q ss_pred CcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 046631 375 DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDM 454 (813)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 454 (813)
-....-.++..+.+.++++.+.++.. +.|.......-..+....+...++...+..+.+..+........+.-.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~ 385 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQ 385 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 00112234778889999996665522 345444322212223344677788888888887766555555566667
Q ss_pred HHhcCCHHHHHHHHhhcCCCCC----ChhhHHHHHHHHHhCCC---hHHHHHH----------------------HHHHH
Q 046631 455 YAKSGLIKTARQIFEKNDSGDR----DQATWNAMIAGYTQNGL---LEEAFVA----------------------FRQML 505 (813)
Q Consensus 455 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~~~---~~~A~~~----------------------~~~m~ 505 (813)
..+.|+.++|.++|+..-...+ +....+-++..|.+.+. ..+++.+ +....
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 7899999999999998664322 34455577888877766 3444333 11111
Q ss_pred H-CCCCC---CHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCH
Q 046631 506 E-HNVTP---NVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--KNS 579 (813)
Q Consensus 506 ~-~~~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~ 579 (813)
. .+..| +...|..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++.. ++.
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~ 542 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN 542 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc
Confidence 1 11223 34455555555555 78888999777766553 4444344445555789999999999998763 455
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVAD 658 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 658 (813)
..+..+...+.+.|+.++|...+++.++.. |+.. .+..+.......|++++|...+++.. .+.|+...+..++.
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~ 617 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARAT 617 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHH
Confidence 567778888999999999999999999854 4443 33344445566799999999999998 45788889999999
Q ss_pred HHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHH
Q 046631 659 MLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWEN 737 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 737 (813)
++.+.|++++|+..+++. ...|+.+..++.+..++...|+.++|+..++++++.+|++ +..+..++.+|...|++++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~--~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD--PALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHH
Confidence 999999999999999987 6678888899999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHCC
Q 046631 738 VDKVRKEMRERG 749 (813)
Q Consensus 738 A~~~~~~m~~~~ 749 (813)
|+..+++..+..
T Consensus 696 A~~~l~~Al~l~ 707 (987)
T PRK09782 696 TQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHhcC
Confidence 999999998654
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=4.3e-22 Score=198.48 Aligned_cols=359 Identities=14% Similarity=0.128 Sum_probs=299.3
Q ss_pred CcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHH-HHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHH
Q 046631 375 DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTAL-LSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLID 453 (813)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 453 (813)
.+..|..+..++...|+.+.|.+.|.+.++. .|+.+...+- .......|++.+|...|.+.++..+....+++.|..
T Consensus 149 fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~ 226 (966)
T KOG4626|consen 149 FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGC 226 (966)
T ss_pred hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcch
Confidence 4556777777778888888888877777663 5666544433 333445688888888888888887766677888888
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCCChHH
Q 046631 454 MYAKSGLIKTARQIFEKNDSGDRD-QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNV-VTIASVLPACNPMGNIEL 531 (813)
Q Consensus 454 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~ 531 (813)
.+-..|++..|+..|++....+|+ ...|-.|...|...+.+++|+..|.+.... .|+. ..+..+...|...|.++.
T Consensus 227 ~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 227 VFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDL 304 (966)
T ss_pred HHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHH
Confidence 999999999999999998887885 457888999999999999999999888764 5654 567777778889999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046631 532 GKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSVTYTTMILGYGQHGMSERALSLFRSMKGC 608 (813)
Q Consensus 532 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 608 (813)
|+..+++.+.... .=...|+.|..++...|++.+|.+.+.+... | ...+.+.|...|...|.+++|..+|....+
T Consensus 305 AI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~- 382 (966)
T KOG4626|consen 305 AIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE- 382 (966)
T ss_pred HHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh-
Confidence 9999998887531 1245799999999999999999999998773 3 577899999999999999999999999998
Q ss_pred CCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHH
Q 046631 609 GIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEI 685 (813)
Q Consensus 609 g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 685 (813)
+.|.-. .++.|...|.+.|++++|+..+++.. .|.|+ ...|+.++..|-..|+.+.|++.+.+. ..+|.-.+.
T Consensus 383 -v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeA 458 (966)
T KOG4626|consen 383 -VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEA 458 (966)
T ss_pred -hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHH
Confidence 777654 78999999999999999999999988 78998 899999999999999999999998886 677888889
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
++.|...+...|+..+|+..++.++.+.|+. +..|-.+..++.--.+|.+-.+.++++
T Consensus 459 hsNLasi~kDsGni~~AI~sY~~aLklkPDf--pdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 459 HSNLASIYKDSGNIPEAIQSYRTALKLKPDF--PDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HhhHHHHhhccCCcHHHHHHHHHHHccCCCC--chhhhHHHHHHHHHhcccchHHHHHHH
Confidence 9999999999999999999999999999998 999888888877777777644443333
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=9.1e-22 Score=196.19 Aligned_cols=365 Identities=12% Similarity=0.135 Sum_probs=319.3
Q ss_pred CcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHH
Q 046631 375 DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMI-DSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLID 453 (813)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 453 (813)
-..+|..+.+.+-..|++++|+.+++.|.+. +| ....|..+..++...|+.+.|.+.+...++.++..-.+.+.+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 3578999999999999999999999999986 45 45688899999999999999999999999988877677777888
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCCChHH
Q 046631 454 MYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNV-VTIASVLPACNPMGNIEL 531 (813)
Q Consensus 454 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~ 531 (813)
.....|++.+|...+.+....+| -.+.|+.|...+-..|+...|+..|++..+ +.|+. ..|..|-..+...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchH
Confidence 88889999999999998776677 456899999999999999999999999987 45654 467777777888888888
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046631 532 GKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--KN-SVTYTTMILGYGQHGMSERALSLFRSMKGC 608 (813)
Q Consensus 532 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 608 (813)
|...+....... +....++..+...|..+|.++-|+..+++..+ |+ ..+|+.|..++...|++.+|.+.|.+...
T Consensus 271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~- 348 (966)
T KOG4626|consen 271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR- 348 (966)
T ss_pred HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH-
Confidence 888777665542 22456677788889999999999999999873 44 67999999999999999999999999998
Q ss_pred CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHH
Q 046631 609 GIEPDA-ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEI 685 (813)
Q Consensus 609 g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 685 (813)
+.|+. ...+.|...+...|++++|..+|.... .+.|. ....+.|...|..+|++++|+.-+++. ...|...++
T Consensus 349 -l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 349 -LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred -hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 56665 488899999999999999999999887 56787 888999999999999999999999886 788999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCc
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLR 751 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 751 (813)
++.++..|...|+...|.+.+.+++..+|.- +..+..|+.+|...|+..+|+.-+++..+..+.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~--AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTF--AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHH--HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999988 999999999999999999999999999876543
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1e-16 Score=169.50 Aligned_cols=544 Identities=12% Similarity=0.096 Sum_probs=383.5
Q ss_pred hhHHHHHHcccCCCCccc-HHHHHHH--HHcCCChhHHHHHHHHHHHC--CCCCCHhhHHHHHHHhhCCCChhHHHHHHH
Q 046631 176 YDLVCKVFDTMRRRNVVA-WNTIVSW--YVKTERYVEAVRQFRMMLRM--GIRPSTISFVNVFPALSSLGDYKSADVVYG 250 (813)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~-~~~li~~--~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 250 (813)
++.|...|..+.+....- ...+..+ ....+++..|+.+|...... ...||... .+-.++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 688888888877532221 2222333 33568999999999996553 34455432 23345578899999999999
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHHHhc---CChHHHHHHHhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhC
Q 046631 251 LLVKLGSEYVNDLFVASSAIFMYAEL---GCFDFARKIFDNCL---ERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELD 324 (813)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~ 324 (813)
.+++..+. ++..+-.|...-... ..+..+..++...- ..|++..+.|...|.-.|++..++.+...+....
T Consensus 224 ralqLdp~---~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 224 RALQLDPT---CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHhcChh---hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 99987742 333333333222222 33555555555442 2488899999999999999999999985544433
Q ss_pred CCCC-ChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCC--cchHHHHHHHHHHCCCcHHHHHHHHH
Q 046631 325 EIVF-DDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERD--VVSWNTMISAFVQNGLDDEGLMLVYE 401 (813)
Q Consensus 325 g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~ 401 (813)
-..+ -...|-.+-+++-..|+++.|.+.+-...+. .+| +..+--+...|.+.|+.+.+...|+.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-------------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEk 367 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-------------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEK 367 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-------------CCCCccccccchhHHHHHhchHHHHHHHHHH
Confidence 2221 2234667778888999999999998888771 122 23345578889999999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHhcCC----ChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCC------HHHHHHHHhhc
Q 046631 402 MQKQGFMIDSVTVTALLSAASNLR----NQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGL------IKTARQIFEKN 471 (813)
Q Consensus 402 m~~~g~~pd~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~ 471 (813)
.... .+-+..|...|...|+..+ ..+.|..+.....+..+.....+-.+..+|....- +..|..++...
T Consensus 368 v~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 368 VLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESK 446 (1018)
T ss_pred HHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHc
Confidence 8876 2333455555555555553 45777777777777775555666667766665543 33444444443
Q ss_pred CCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHhccCCChHHHHHHHHHHHHc
Q 046631 472 DSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEH---NVTPNV------VTIASVLPACNPMGNIELGKQLHGFSIRY 542 (813)
Q Consensus 472 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 542 (813)
.. .+.....|.+...+...|.+.+|...|...... ...+|. .+--.+....-..++.+.|...+..+.+.
T Consensus 447 ~~-~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 447 GK-QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred CC-CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 32 256778899999999999999999999988765 223333 22334455556778999999999988876
Q ss_pred CCCCchhHHHHHHHHHHhc-------CCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CC
Q 046631 543 LLDQNVFVGTSLIDMYSKS-------GVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCG-IE 611 (813)
Q Consensus 543 ~~~~~~~~~~~li~~~~~~-------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 611 (813)
. -..|++|.+. +...+|...+..+. ..|+..|+-+...+.....+..|.+-|+...+.- ..
T Consensus 526 h--------p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 526 H--------PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred C--------chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 3 2234444443 67788988888876 4578888888889999999988888777666532 23
Q ss_pred CCHHHHHHHHHHHhc------------cCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhCc
Q 046631 612 PDAITFVAVLSACSY------------AGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELGE 678 (813)
Q Consensus 612 p~~~~~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 678 (813)
+|..+...|...|.. .+..+.|+++|.+.++ ..| +..+-+-++-+++..|++.+|..+|.+..+
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHH
Confidence 676666666665532 2346778888888874 466 688889999999999999999999999866
Q ss_pred CCC-hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 679 EGN-VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 679 ~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
... ..++|-.+..+|...|++..|+++|+..+...-..+.+.....|+.++.+.|+|.+|.+.........+
T Consensus 675 a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 675 ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 543 455999999999999999999999999987654333378888999999999999999999888876543
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.6e-19 Score=192.15 Aligned_cols=293 Identities=14% Similarity=0.137 Sum_probs=191.8
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhccCCCh
Q 046631 454 MYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPN---VVTIASVLPACNPMGNI 529 (813)
Q Consensus 454 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~ 529 (813)
.+...|++++|...|+++....| +..++..+...|...|++++|..+++.+......++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34556677777777777665555 344667777777777777777777777766432221 13445555666666666
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--C------HhHHHHHHHHHHhcCChHHHHHH
Q 046631 530 ELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK--N------SVTYTTMILGYGQHGMSERALSL 601 (813)
Q Consensus 530 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~ 601 (813)
+.|..+++.+.+.. +.+..+++.++..|.+.|++++|.+.++.+.+. + ...|..+...+...|++++|+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666665532 234556666777777777777777777666421 1 12345566677777888888888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHhC-
Q 046631 602 FRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVADMLGRVGKVVEAYEFVKELG- 677 (813)
Q Consensus 602 ~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 677 (813)
|+++.+. .|+ ...+..+...+.+.|++++|.++++++.+. .|+ ..++..++.+|.+.|++++|.+.++++.
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8887764 333 446666777777888888888888877744 343 4566777788888888888888877763
Q ss_pred cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh--cCCcHHHHHHHHHHHHCCCccCCc
Q 046631 678 EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE--EGNWENVDKVRKEMRERGLRKEVG 755 (813)
Q Consensus 678 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~ 755 (813)
..|+.. .+..++..+.+.|++++|...++++++..|++ .....++...+.. .|+.+++..++++|.+++++++|.
T Consensus 278 ~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~--~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSL--RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH--HHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 345444 55777777888888888888888888887776 4443333322222 457788888888888777777664
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.3e-16 Score=166.91 Aligned_cols=577 Identities=12% Similarity=0.091 Sum_probs=404.1
Q ss_pred chHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCC------CCcccHHH
Q 046631 123 LRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRR------RNVVAWNT 196 (813)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~ 196 (813)
++.|.+.|..+.+.....-......---.|.+ +++-.|..+|..... +|+.. .
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynk-------------------kdY~~al~yyk~al~inp~~~aD~rI--g 204 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNK-------------------KDYRGALKYYKKALRINPACKADVRI--G 204 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhcc-------------------ccHHHHHHHHHHHHhcCcccCCCccc--h
Confidence 58888888888877532222222222222333 899999999998442 23321 2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHh----hCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 046631 197 IVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPAL----SSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFM 272 (813)
Q Consensus 197 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 272 (813)
+-..+.+.|+.+.|+..|.+..+ +.|+.+.-...+.-+ .....+..+.+.+...-+.... |+.+.+.|.+.
T Consensus 205 ig~Cf~kl~~~~~a~~a~~ralq--Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~---nP~~l~~LAn~ 279 (1018)
T KOG2002|consen 205 IGHCFWKLGMSEKALLAFERALQ--LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE---NPVALNHLANH 279 (1018)
T ss_pred hhhHHHhccchhhHHHHHHHHHh--cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC---CcHHHHHHHHH
Confidence 22455688999999999999988 456444222222211 2334566777777777776654 88899999999
Q ss_pred HHhcCChHHHHHHHhhcCCCC------cchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhh--HHHHHHHhcccC
Q 046631 273 YAELGCFDFARKIFDNCLERN------TEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVT--FLSALSAVSQLQ 344 (813)
Q Consensus 273 ~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~ 344 (813)
|.-.|+++.+..+...+...+ ..+|.-+.++|-..|++++|...| |...+..++.++ +..+...+.+.|
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY---~~s~k~~~d~~~l~~~GlgQm~i~~~ 356 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY---MESLKADNDNFVLPLVGLGQMYIKRG 356 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH---HHHHccCCCCccccccchhHHHHHhc
Confidence 999999999999988776542 345788999999999999999999 444445566544 456778889999
Q ss_pred cchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCC----CcHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 046631 345 ELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNG----LDDEGLMLVYEMQKQGFMIDSVTVTALLSA 420 (813)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 420 (813)
+++.+...|+.+.+.. +.+..+-.+|...|...+ ..+.|..++.+..+.- .-|...|..+-..
T Consensus 357 dle~s~~~fEkv~k~~------------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQL------------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred hHHHHHHHHHHHHHhC------------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 9999999999998832 223455666666666654 4567777777766653 4566677666555
Q ss_pred HhcCCChHHHHHHHHHHH----HhCCCCc-chHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CCCh------hhHHHH
Q 046631 421 ASNLRNQDVGKQTHAYLL----RHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSG-----DRDQ------ATWNAM 484 (813)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~----~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~------~~~~~l 484 (813)
+-...-+ ....++..+. ..+..+. .+.|.+...+...|++.+|...|++..+. +++. .+--.+
T Consensus 424 ~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 5544433 3365555443 4555555 89999999999999999999999975433 2232 122334
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 046631 485 IAGYTQNGLLEEAFVAFRQMLEHNVTPNVVT-IASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGV 563 (813)
Q Consensus 485 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 563 (813)
...+-..++++.|.+.|..+.+. .|..+. |.-+.......+...+|...+....... ..++.+++.+...|.+...
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 55666778999999999999885 466543 4344333344577788888888776642 3355566667778888888
Q ss_pred HHHHHHHHhhCC-----CCCHhHHHHHHHHHHh------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 046631 564 INYAANVFAKIP-----EKNSVTYTTMILGYGQ------------HGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY 626 (813)
Q Consensus 564 ~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 626 (813)
+..|.+-|..+. .+|+.+.-+|.+.|.+ .+..++|+++|.+.+... +-|...-+.+.-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 888888665554 2355555555555442 345689999999998842 3344455566667789
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhC---cCCChHHHHHHHHHHHHHhCCHHHHH
Q 046631 627 AGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELG---EEGNVLEIWGSLLGSCRLHGHSELAE 703 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~ 703 (813)
.|++.+|..+|.+..+.. .-...+|..++.+|..+|+|-.|+++|+..- ...+...+...|..++...|.+.+|.
T Consensus 659 kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred ccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999998762 2346778899999999999999999998862 22345559999999999999999999
Q ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHH-------------------hcCCcHHHHHHHHHHHHCCC
Q 046631 704 VVAKKLLEMDTRNSMPGYHVLLSNIYA-------------------EEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 704 ~~~~~~~~~~p~~~~~~~~~~l~~~~~-------------------~~g~~~~A~~~~~~m~~~~~ 750 (813)
..+..+....|.+ +.....++-+.. ..+..+.|.++|..|...+-
T Consensus 737 ~~ll~a~~~~p~~--~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 737 EALLKARHLAPSN--TSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHhCCcc--chHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999998 665554444432 34567788888888887654
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=3e-17 Score=183.93 Aligned_cols=424 Identities=13% Similarity=0.034 Sum_probs=299.0
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCC
Q 046631 296 VWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERD 375 (813)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (813)
.+......+.+.|++++|+..|.+.+. +.|+...|..+-.++.+.|+++.|...+..+++- .+.+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l------------~p~~ 193 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL------------DPDY 193 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc------------CCCC
Confidence 344556778889999999999966654 4577778888888899999999999998888772 1235
Q ss_pred cchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 046631 376 VVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMY 455 (813)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (813)
...|..+..+|...|++++|+..|......+-. +......++..... ..+........+..+........+.. |
T Consensus 194 ~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~-~ 267 (615)
T TIGR00990 194 SKALNRRANAYDGLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGN-Y 267 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHH-H
Confidence 668888999999999999999888776554311 11112222221111 12222333333333322222222222 2
Q ss_pred HhcCCHHHHHHHHhhcCCCCCC-hhhHHHHHHHH---HhCCChHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHhccCCCh
Q 046631 456 AKSGLIKTARQIFEKNDSGDRD-QATWNAMIAGY---TQNGLLEEAFVAFRQMLEHN-VTPN-VVTIASVLPACNPMGNI 529 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~---~~~~~~~~A~~~~~~m~~~~-~~p~-~~t~~~ll~~~~~~~~~ 529 (813)
...........-+.......+. ...+..+...+ ...+++++|++.|++....+ ..|+ ...+..+...+...|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 268 LQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred HHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 2222222222222222211221 11122111111 23478999999999998864 3343 34566777778889999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046631 530 ELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMK 606 (813)
Q Consensus 530 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 606 (813)
++|...++...... +.....|..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++.+
T Consensus 348 ~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 348 LEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999988763 22355788888999999999999999998763 367899999999999999999999999999
Q ss_pred hCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChH
Q 046631 607 GCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVL 683 (813)
Q Consensus 607 ~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~ 683 (813)
+. .|+ ...+..+...+.+.|++++|+..|++..+. .|+ ...+..++.++...|++++|++.+++. ...|...
T Consensus 427 ~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 427 DL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred Hc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence 84 554 456777888899999999999999999854 575 888999999999999999999999985 3333211
Q ss_pred H-------HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 684 E-------IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 684 ~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
. .++..+..+...|++++|+..++++++++|++ ...+..++.+|...|++++|.+.+++..+.
T Consensus 502 ~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~--~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 502 PMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC--DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1 22223333445699999999999999999988 788999999999999999999999998765
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.8e-17 Score=184.63 Aligned_cols=330 Identities=13% Similarity=0.044 Sum_probs=272.2
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhc
Q 046631 379 WNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKS 458 (813)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (813)
...++..+.+.|++++|+.+++........+ ...+..++.++...|+++.|...++.+.+..+.....+..+...+.+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 4456778899999999999999999874333 334445556677899999999999999999888878888899999999
Q ss_pred CCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHH
Q 046631 459 GLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHG 537 (813)
Q Consensus 459 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 537 (813)
|++++|...|++.....| +...+..+...+...|++++|...++.+.... |+.......+..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999877667 56788999999999999999999999887753 333322222334778899999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHH----HHHHHHHHHhCCC
Q 046631 538 FSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSER----ALSLFRSMKGCGI 610 (813)
Q Consensus 538 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~ 610 (813)
.+.+....++...+..+...+.+.|++++|...|+++.. .+...+..+...|...|++++ |+..|++..+ .
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l 279 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--F 279 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--h
Confidence 887764334445556667888999999999999998763 367788899999999999986 8999999998 4
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCChHHHHH
Q 046631 611 EPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNVLEIWG 687 (813)
Q Consensus 611 ~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 687 (813)
.|+ ...+..+...+...|++++|...+++..+. .|+ ...+..++.+|.+.|++++|++.++++. ..|+....+.
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 555 457888889999999999999999999854 675 7778889999999999999999999874 5566654555
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.+..++...|+.++|...++++++..|++
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 56778899999999999999999999986
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=2.3e-17 Score=183.73 Aligned_cols=355 Identities=9% Similarity=-0.055 Sum_probs=287.9
Q ss_pred HHHCCCcHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHH
Q 046631 386 FVQNGLDDEGLMLVYEMQKQG--FMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKT 463 (813)
Q Consensus 386 ~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 463 (813)
+.+..+|+.-.-.|..-.++- -.-+......++..+.+.|+++.|..++..++...+........++......|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 345666666555555443321 112233455667888999999999999999999999888666667777888999999
Q ss_pred HHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 046631 464 ARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPN-VVTIASVLPACNPMGNIELGKQLHGFSIR 541 (813)
Q Consensus 464 A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 541 (813)
|...|+++....| +...|..+...+.+.|++++|+..|+++... .|+ ...+..+...+...|+.++|...+..+..
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999887777 5668888999999999999999999999885 454 55777888899999999999999998776
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 046631 542 YLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK----NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITF 617 (813)
Q Consensus 542 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 617 (813)
....+ ...+..+ ..+.+.|++++|...++.+.+. +...+..+...+...|++++|+..++++.+.. +.+...+
T Consensus 173 ~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 54333 2233333 3478899999999999987642 33445556778899999999999999999853 3345577
Q ss_pred HHHHHHHhccCcHHH----HHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHH
Q 046631 618 VAVLSACSYAGLVDE----GLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLG 691 (813)
Q Consensus 618 ~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~ 691 (813)
..+...+...|++++ |...|+++. .+.|+ ...+..++.++.+.|++++|+..+++. ...|+.+.++..+..
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHAL---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 788889999999986 899999988 45785 889999999999999999999999987 556777778999999
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 692 SCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 692 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
++...|++++|...++++++.+|.+ +..+..++.++...|++++|...+++..+..+
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~--~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVT--SKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999987 67677778999999999999999999887644
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=4e-16 Score=174.86 Aligned_cols=424 Identities=11% Similarity=0.041 Sum_probs=236.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 046631 194 WNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMY 273 (813)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 273 (813)
+...-..+.+.|++++|+..|++.+. +.|+...|..+..++...|++++|...+..+++..+. +...+..+..+|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~---~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD---YSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHH
Confidence 44556677888999999999998876 5677778888888888888888888888888887643 556677777777
Q ss_pred HhcCChHHHHHHHhhcCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHH
Q 046631 274 AELGCFDFARKIFDNCLERNT---EVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQ 350 (813)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 350 (813)
...|++++|..-|......+. .....++..+.. ..+.......+...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-------------------------- 254 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-------------------------- 254 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC--------------------------
Confidence 777777777766654322111 111111111110 11111111111111
Q ss_pred HHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCH-hHHHHHHHH---HhcCCC
Q 046631 351 QLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDS-VTVTALLSA---ASNLRN 426 (813)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~---~~~~~~ 426 (813)
+.+...+..+. .|......+....-+.+-.+ ..++. ..+..+... ....++
T Consensus 255 ----------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~ 309 (615)
T TIGR00990 255 ----------------------PENLPSVTFVG-NYLQSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADES 309 (615)
T ss_pred ----------------------CCCCCCHHHHH-HHHHHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhh
Confidence 11111111111 11111111111111110000 00000 000000000 011123
Q ss_pred hHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 046631 427 QDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQML 505 (813)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 505 (813)
++.|...++..++.+.. .| +...|+.+...+...|++++|+..|++.+
T Consensus 310 y~~A~~~~~~al~~~~~-------------------------------~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 310 YEEAARAFEKALDLGKL-------------------------------GEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred HHHHHHHHHHHHhcCCC-------------------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333332210 11 22234444444444444444444444444
Q ss_pred HCCCCCC-HHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhH
Q 046631 506 EHNVTPN-VVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSVT 581 (813)
Q Consensus 506 ~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~ 581 (813)
+. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+ | +...
T Consensus 359 ~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 359 EL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred Hc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 32 222 2233444444444444444444444444332 22345666777777888888888888877652 3 5667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCCh-h-------H
Q 046631 582 YTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPST-E-------H 652 (813)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~ 652 (813)
|..+...+.+.|++++|+..|++.++. .|+ ...+..+...+...|++++|+..|++..+ +.|+. . .
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPL 510 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHH
Confidence 777888888888999999998888873 444 56777788888888999999998888774 34431 1 1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
++.....+...|++++|.+++++. ...|+...++..++..+...|++++|...+++++++.+..
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 122223344568999999998885 5566666578889999999999999999999998887654
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=3.2e-16 Score=178.67 Aligned_cols=400 Identities=9% Similarity=-0.017 Sum_probs=189.3
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHhhcCC-C--CcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 046631 262 DLFVASSAIFMYAELGCFDFARKIFDNCLE-R--NTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALS 338 (813)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~ 338 (813)
+.....-.+......|+.++|++++.+... . +...+..+...+...|++++|+.+|++.+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-------------- 79 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-------------- 79 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------
Confidence 333344445555556666666666665543 1 33346666666666666666666664444322
Q ss_pred HhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 046631 339 AVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALL 418 (813)
Q Consensus 339 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 418 (813)
+.+...+..+...+...|++++|+..+++..+. .|+...+..+.
T Consensus 80 ----------------------------------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la 123 (765)
T PRK10049 80 ----------------------------------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALA 123 (765)
T ss_pred ----------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 122334445555566666666666666666654 22222255555
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChh------hHHHHHHHHH---
Q 046631 419 SAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQA------TWNAMIAGYT--- 489 (813)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~li~~~~--- 489 (813)
.++...|+.+.|...++.+++..+....+...+...+...+..++|...++.... .|+.. ....++..+.
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccc
Confidence 5556666666666666666666655554445566667777777778777776664 33310 1111122111
Q ss_pred --hCCCh---HHHHHHHHHHHHC-CCCCCHH-HHHH----HHHHhccCCChHHHHHHHHHHHHcCCC-CchhHHHHHHHH
Q 046631 490 --QNGLL---EEAFVAFRQMLEH-NVTPNVV-TIAS----VLPACNPMGNIELGKQLHGFSIRYLLD-QNVFVGTSLIDM 557 (813)
Q Consensus 490 --~~~~~---~~A~~~~~~m~~~-~~~p~~~-t~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~ 557 (813)
..+++ ++|++.++.+.+. ...|+.. .+.. .+.++...|+.++|+..|+.+.+.+.. |+- ....+..+
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence 11223 5566666666643 1122211 1100 012223334555555555555444321 111 11113444
Q ss_pred HHhcCCHHHHHHHHhhCCCCC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CCCH---HH
Q 046631 558 YSKSGVINYAANVFAKIPEKN-------SVTYTTMILGYGQHGMSERALSLFRSMKGCGI-----------EPDA---IT 616 (813)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~---~~ 616 (813)
|...|++++|+..|+++.+.+ ...+..+..++...|++++|+.+++++.+... .|+. ..
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 555555555555555443211 12233344444555555555555555544210 0111 12
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHH
Q 046631 617 FVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCR 694 (813)
Q Consensus 617 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~ 694 (813)
+..+...+...|+.++|+++++++... .|+ ...+..++.++...|++++|++.+++. ...|+....+..++..+.
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 223333444444555555544444422 332 444444444444445555555444443 223443334444444444
Q ss_pred HhCCHHHHHHHHHHHhcCCCCC
Q 046631 695 LHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
..|++++|+..++++++..|++
T Consensus 439 ~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HhCCHHHHHHHHHHHHHhCCCC
Confidence 4444555555555555444444
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=1.2e-17 Score=177.81 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIP--EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY-- 626 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~-- 626 (813)
++.++.+|.+.|++++|.+.++++. .|+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhcc
Confidence 4444455555555555555555443 23333445555555555555555555555555 24555555555544332
Q ss_pred -cCcHHHHHHHHHHHHHhcCCCCCh
Q 046631 627 -AGLVDEGLQIFDLMQQEYKIQPST 650 (813)
Q Consensus 627 -~g~~~~a~~~~~~~~~~~~~~p~~ 650 (813)
.|+.+++..++++|.+. ++.|++
T Consensus 330 ~~g~~~~a~~~~~~~~~~-~~~~~p 353 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGE-QLKRKP 353 (389)
T ss_pred CCccchhHHHHHHHHHHH-HHhCCC
Confidence 33555555555555554 444443
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=5e-16 Score=177.09 Aligned_cols=368 Identities=10% Similarity=0.005 Sum_probs=283.1
Q ss_pred CcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 046631 375 DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDM 454 (813)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 454 (813)
+...+..+...+.+.|++++|.++|++..+.. +.+...+..+...+...|++++|...++.+++..+.... ...+...
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~ 125 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYV 125 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Confidence 44568889999999999999999999988762 333556667778889999999999999999998766657 8888999
Q ss_pred HHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHhc---
Q 046631 455 YAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNV------VTIASVLPACN--- 524 (813)
Q Consensus 455 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~t~~~ll~~~~--- 524 (813)
+...|+.++|...+++.....| +...+..+...+...+..++|+..++.... .|+. .....++....
T Consensus 126 l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999887777 555677788888899999999999886654 3332 01112222221
Q ss_pred --cCCCh---HHHHHHHHHHHHc-CCCCchhH--HHH---HHHHHHhcCCHHHHHHHHhhCCCCC---H-hHHHHHHHHH
Q 046631 525 --PMGNI---ELGKQLHGFSIRY-LLDQNVFV--GTS---LIDMYSKSGVINYAANVFAKIPEKN---S-VTYTTMILGY 589 (813)
Q Consensus 525 --~~~~~---~~a~~~~~~~~~~-~~~~~~~~--~~~---li~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~ 589 (813)
..+.+ +.|...++.+.+. ...|+... ... .+.++...|++++|+..|+++.+.+ + ..-..+...|
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~y 282 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAY 282 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 12233 6678888887754 33333211 111 1234567799999999999988532 1 1222257789
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC----------CCCC---hhHH
Q 046631 590 GQHGMSERALSLFRSMKGCGIEP---DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK----------IQPS---TEHY 653 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~ 653 (813)
...|++++|+..|+++.+..... .......+..++...|++++|.++++.+.+... -.|+ ...+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999988743211 124566677788999999999999999985410 1122 2356
Q ss_pred HHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhc
Q 046631 654 CCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEE 732 (813)
Q Consensus 654 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 732 (813)
..++..+...|++++|++.++++ ...|....++..++..+...|+.++|+..++++++++|++ +..+..++.++...
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~--~~l~~~~a~~al~~ 440 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN--INLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHh
Confidence 67888999999999999999997 5567777799999999999999999999999999999999 89999999999999
Q ss_pred CCcHHHHHHHHHHHHCC
Q 046631 733 GNWENVDKVRKEMRERG 749 (813)
Q Consensus 733 g~~~~A~~~~~~m~~~~ 749 (813)
|+|++|..+++++.+..
T Consensus 441 ~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 441 QEWRQMDVLTDDVVARE 457 (765)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998754
No 25
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=2e-12 Score=131.19 Aligned_cols=618 Identities=12% Similarity=0.063 Sum_probs=448.4
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhh
Q 046631 85 LPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMV 164 (813)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 164 (813)
+...|..+++..++.+ |. ++..|.+-.+.=-..|.+..|+.+ ++.+|-.|.+.++...
T Consensus 266 DikKaR~llKSvretn--P~-hp~gWIAsArLEEvagKl~~Ar~~------------------I~~GCe~cprSeDvWL- 323 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN--PK-HPPGWIASARLEEVAGKLSVARNL------------------IMKGCEECPRSEDVWL- 323 (913)
T ss_pred HHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHHhhHHHHHHHH------------------HHHHHhhCCchHHHHH-
Confidence 5678899999999888 43 444444433333334444444333 2333333322111100
Q ss_pred hhcccccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHhhCCCChh
Q 046631 165 GLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTI-SFVNVFPALSSLGDYK 243 (813)
Q Consensus 165 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~ 243 (813)
...+....+.|..+.-...+..+.+-..-+.+---..+...=.+++++.++. -|+.+ .|- +.....+.+
T Consensus 324 ----eaiRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv~LWK----aAVelE~~~ 393 (913)
T KOG0495|consen 324 ----EAIRLHPPDVAKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSVRLWK----AAVELEEPE 393 (913)
T ss_pred ----HHHhcCChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchHHHHH----HHHhccChH
Confidence 0000133444444444333211111111122111122333445666666664 35544 443 344556667
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 046631 244 SADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLE---RNTEVWNTMIGGYVQNNHPVEAIELFVQV 320 (813)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 320 (813)
.|+-++..+++.-+. ... |.-+|++..-++.|.+++.+..+ .+...|-+-...--.+|+.+....++.+.
T Consensus 394 darilL~rAveccp~---s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 394 DARILLERAVECCPQ---SMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred HHHHHHHHHHHhccc---hHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 788888888876533 333 34455666667888888776543 47888888777778899999998888665
Q ss_pred H---HhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHH
Q 046631 321 L---ELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGL 396 (813)
Q Consensus 321 m---~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 396 (813)
+ ...|+..+..-|..=...|-..|..-.+..+...++. |.... .--.+|+.-...|.+.+.++-|.
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee----------d~~~tw~~da~~~~k~~~~~car 536 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE----------DRKSTWLDDAQSCEKRPAIECAR 536 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc----------hhHhHHhhhHHHHHhcchHHHHH
Confidence 5 5678888988898888899999999999998888887 65443 23467999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC
Q 046631 397 MLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR 476 (813)
Q Consensus 397 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 476 (813)
.+|...++. +.-+...|......--..|..+....++..++.+-+....++......+-..|++..|..++...-...|
T Consensus 537 AVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p 615 (913)
T KOG0495|consen 537 AVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP 615 (913)
T ss_pred HHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence 999998875 3445667777777777789999999999999999988877777788888889999999999998765566
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046631 477 -DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLI 555 (813)
Q Consensus 477 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 555 (813)
+...|-+-+..-..+.++++|..+|.+.... .|+...|.--+..-...++.++|.+++++..+.- +.-...|-.+.
T Consensus 616 nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlG 692 (913)
T KOG0495|consen 616 NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLG 692 (913)
T ss_pred CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHh
Confidence 5668999999999999999999999998874 5777777666666677899999999998887752 22345778888
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 046631 556 DMYSKSGVINYAANVFAKIPE--K-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDE 632 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~ 632 (813)
+.+-+.++++.|.+.|..-.+ | .+..|-.|...--+.|+..+|..++++..-.+ +-+...|...|+.-.+.|+.+.
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHH
Confidence 899999999999999987664 4 46678888888888899999999999998864 4566789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q 046631 633 GLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM 712 (813)
Q Consensus 633 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 712 (813)
|..++.+..++ +..+-..|..-|.+..+.++-....+.+++...+|.+. -++...+....+++.|...|.+++..
T Consensus 772 a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVl---laia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 772 AELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL---LAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999988875 33357788888888889999888888888876666544 44555556667899999999999999
Q ss_pred CCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECCEE
Q 046631 713 DTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYV 765 (813)
Q Consensus 713 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 765 (813)
+|++ ..++..+-..+...|.-++-.+++.+.....+ .-|..|..++-.+
T Consensus 847 d~d~--GD~wa~fykfel~hG~eed~kev~~~c~~~EP--~hG~~W~avSK~i 895 (913)
T KOG0495|consen 847 DPDN--GDAWAWFYKFELRHGTEEDQKEVLKKCETAEP--THGELWQAVSKDI 895 (913)
T ss_pred CCcc--chHHHHHHHHHHHhCCHHHHHHHHHHHhccCC--CCCcHHHHHhhhH
Confidence 9999 88888887888899999999999998887653 3455665554433
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=1.2e-14 Score=162.06 Aligned_cols=424 Identities=9% Similarity=0.003 Sum_probs=266.5
Q ss_pred hCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcc-hHHHH--HHHHHhCCCchHH
Q 046631 237 SSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTE-VWNTM--IGGYVQNNHPVEA 313 (813)
Q Consensus 237 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~~~A 313 (813)
.+.|+++.|...|+++.+..+. ....++ .++..+...|+.++|+..+++...++.. .+..+ ...|...|++++|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~--~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPL--QSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCcc--chhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4556666666666666666633 112233 6666677777777777777777655333 33333 3466667888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcH
Q 046631 314 IELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDD 393 (813)
Q Consensus 314 ~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 393 (813)
+++|++.+....- |...+..++..+...++.+
T Consensus 122 iely~kaL~~dP~------------------------------------------------n~~~l~gLa~~y~~~~q~~ 153 (822)
T PRK14574 122 LALWQSSLKKDPT------------------------------------------------NPDLISGMIMTQADAGRGG 153 (822)
T ss_pred HHHHHHHHhhCCC------------------------------------------------CHHHHHHHHHHHhhcCCHH
Confidence 8888555544321 2222333444444455555
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 046631 394 EGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDS 473 (813)
Q Consensus 394 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 473 (813)
+|++.++++... .|+...+..++..+...++...|...++.+++..+....++..++....+.|-...|.++.++-+.
T Consensus 154 eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~ 231 (822)
T PRK14574 154 VVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN 231 (822)
T ss_pred HHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc
Confidence 555555554443 333333322222222233333355555555555544444445555555566666566555554332
Q ss_pred CCCChh-hH--HHHHHHHH---------hCCC---hHHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHhccCCChHHH
Q 046631 474 GDRDQA-TW--NAMIAGYT---------QNGL---LEEAFVAFRQMLEH-NVTPNV-V----TIASVLPACNPMGNIELG 532 (813)
Q Consensus 474 ~~~~~~-~~--~~li~~~~---------~~~~---~~~A~~~~~~m~~~-~~~p~~-~----t~~~ll~~~~~~~~~~~a 532 (813)
.-.... .+ ...+.-.. ...+ .+.|+.-++.+... +-.|.. . ...-.+-++...++..++
T Consensus 232 ~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v 311 (822)
T PRK14574 232 LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL 311 (822)
T ss_pred ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 111000 00 00000001 1112 34555666665542 122321 1 122345566778888889
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---------CHhHHHHHHHHHHhcCChHHHHHHHH
Q 046631 533 KQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK---------NSVTYTTMILGYGQHGMSERALSLFR 603 (813)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~ 603 (813)
+..++.+...+.+....+-.++.++|...+++++|..+|+++..+ +......|.-+|...+++++|..+++
T Consensus 312 i~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~ 391 (822)
T PRK14574 312 IKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAV 391 (822)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence 999998888887766778888999999999999999999987531 23335778889999999999999999
Q ss_pred HHHhCC-------------CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHH
Q 046631 604 SMKGCG-------------IEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 604 ~m~~~g-------------~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 668 (813)
++.+.- ..||-. .+..++..+...|++.+|.+.++++.. ..| |......+.+++...|+..+
T Consensus 392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHH
Confidence 998731 112222 344456678889999999999999974 467 68999999999999999999
Q ss_pred HHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 669 AYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 669 A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
|++.++.. ...|+...+....+.+....+++++|..+.+.+++..|++
T Consensus 469 A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 469 AEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 99999776 4567666678888888889999999999999999999998
No 27
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=3.2e-16 Score=145.25 Aligned_cols=309 Identities=11% Similarity=0.105 Sum_probs=229.7
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHc-CCCCc--hhHHHHHHHHHHhcCCHH
Q 046631 489 TQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRY-LLDQN--VFVGTSLIDMYSKSGVIN 565 (813)
Q Consensus 489 ~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~--~~~~~~li~~~~~~g~~~ 565 (813)
.-.++.++|.++|-+|.+.. +.+..+-.++-+.+.+.|.++.|+++|+.+.++ +++-+ ......|..-|.+.|-+|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34567888888888888742 223345556777788888888888888887776 33222 234556778899999999
Q ss_pred HHHHHHhhCCC-C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHH
Q 046631 566 YAANVFAKIPE-K--NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI----TFVAVLSACSYAGLVDEGLQIFD 638 (813)
Q Consensus 566 ~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~a~~~~g~~~~a~~~~~ 638 (813)
+|+.+|..+.+ + -..+...|+..|....+|++|+++-+++.+.+-.+..+ .|+.|...+....+++.|..++.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999886 3 35578889999999999999999999999987666654 68888888888999999999999
Q ss_pred HHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCC--ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 639 LMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEG--NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 639 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+..+. .|+ ++.-..+++.+...|+++.|.+.++.+..+. ..+.+...|..+|.+.|+.+++...+.++.+..+.
T Consensus 205 kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 205 KALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 99855 675 8888899999999999999999999985443 34558899999999999999999999999998888
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHc
Q 046631 716 NSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNA 795 (813)
Q Consensus 716 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 795 (813)
. .....+........-.++|..++.+-..+.+....-...++. ...|.+.....+-...|..+..+..+.
T Consensus 282 ~---~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~-------~l~daeeg~~k~sL~~lr~mvge~l~~ 351 (389)
T COG2956 282 A---DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY-------HLADAEEGRAKESLDLLRDMVGEQLRR 351 (389)
T ss_pred c---cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh-------hhccccccchhhhHHHHHHHHHHHHhh
Confidence 4 555566666555555566666554444332211110011110 011222334455567788888877788
Q ss_pred CCccCCCCCCCCCCCC
Q 046631 796 GNKTIQNSNVDATPRF 811 (813)
Q Consensus 796 ~~~~~c~~c~~~~~~~ 811 (813)
...|+|..|||..+.|
T Consensus 352 ~~~YRC~~CGF~a~~l 367 (389)
T COG2956 352 KPRYRCQNCGFTAHTL 367 (389)
T ss_pred cCCceecccCCcceee
Confidence 8899999999998764
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.7e-14 Score=138.71 Aligned_cols=368 Identities=15% Similarity=0.114 Sum_probs=249.6
Q ss_pred HHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCC
Q 046631 182 VFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVN 261 (813)
Q Consensus 182 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 261 (813)
++-+...++..+|..||.++|+.-..++|.+++++-.....+.+..+||.+|.+-.- ...+++..+|...... |
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~--P 271 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMT--P 271 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcC--C
Confidence 444444557789999999999999999999999999988889999999999988653 3348899999999988 9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHhh----c----CCCCcchHHHHHHHHHhCCCchH-HHHHHHHHHHh---C---CC
Q 046631 262 DLFVASSAIFMYAELGCFDFARKIFDN----C----LERNTEVWNTMIGGYVQNNHPVE-AIELFVQVLEL---D---EI 326 (813)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~~~~~----~----~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~m~~---~---g~ 326 (813)
|.+++|+++...++.|+++.|++.+-+ | .+|...+|..+|.-+++.+++.+ |..++.+.+.. . .+
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 999999999999999999988766543 3 56788999999999999998855 34444343332 1 13
Q ss_pred CC-ChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCC---cchHHHHHHHHHHCCCcHHHHHHHHHH
Q 046631 327 VF-DDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERD---VVSWNTMISAFVQNGLDDEGLMLVYEM 402 (813)
Q Consensus 327 ~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (813)
.| |...|...+..|.+..+.+.|.+++..+..|-... . +.++ ..-|..+....++....+..+.+|+.|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~--~-----ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK--F-----IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh--h-----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 44567889999999999999999999887732111 0 1222 234667888889999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhH
Q 046631 403 QKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATW 481 (813)
Q Consensus 403 ~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 481 (813)
.-+-+-|+..+...++++....+.++...+++..++..|.... .+...++..+++..- .|+...-
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~--------------hp~tp~r 490 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL--------------HPLTPER 490 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC--------------CCCChHH
Confidence 9888899999999999999999999999999999999887666 444444444444320 1221111
Q ss_pred HHHHHHHHh--CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCC-CCchhHHH---HHH
Q 046631 482 NAMIAGYTQ--NGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLL-DQNVFVGT---SLI 555 (813)
Q Consensus 482 ~~li~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~---~li 555 (813)
..+-....+ ..-.+.....-.+|.+.... ....+.++-.+.+.|..++|.+++..+.+.+- -|-....| -++
T Consensus 491 ~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~ 568 (625)
T KOG4422|consen 491 EQLQVAFAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELM 568 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHH
Confidence 111111111 01111111222233333322 23334444445566666666666666544321 22222233 344
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC
Q 046631 556 DMYSKSGVINYAANVFAKIPEKN 578 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~ 578 (813)
+.-.+..+...|..+++-+...|
T Consensus 569 d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 569 DSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Confidence 44555666666666666665433
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=4.5e-14 Score=157.45 Aligned_cols=424 Identities=9% Similarity=-0.009 Sum_probs=310.3
Q ss_pred HHHhCCCchHHHHHHHHHHHhCCCCCCh--hhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHH
Q 046631 303 GYVQNNHPVEAIELFVQVLELDEIVFDD--VTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWN 380 (813)
Q Consensus 303 ~~~~~g~~~~A~~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (813)
...+.|+++.|++.|.+.++.. |+. ..+ .++..+...|+.++|...++.... +.+...+.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--------------p~n~~~~~ 104 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--------------SMNISSRG 104 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--------------CCCCCHHH
Confidence 4578999999999996666544 443 122 777778888999999998887752 11333344
Q ss_pred HH--HHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhc
Q 046631 381 TM--ISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKS 458 (813)
Q Consensus 381 ~l--i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (813)
.+ ...|...|++++|+++|+++.+.. +-+...+..+...+...++.++|...+..+.+..+.... +..++..+...
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~-~l~layL~~~~ 182 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-YMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-HHHHHHHHHhc
Confidence 44 557888899999999999999874 223456667778888999999999999999888766332 24455555556
Q ss_pred CCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHh---c--cC
Q 046631 459 GLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVV------TIASVLPAC---N--PM 526 (813)
Q Consensus 459 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~------t~~~ll~~~---~--~~ 526 (813)
++..+|++.++++....| +...+..+...+.+.|-...|+++.++-... +.+... .....++.- . ..
T Consensus 183 ~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 777679999999887778 5667788889999999999999877653211 111110 011111110 0 11
Q ss_pred CC---hHHHHHHHHHHHHc-CCCCch-hH-HH---HHHHHHHhcCCHHHHHHHHhhCCCC----CHhHHHHHHHHHHhcC
Q 046631 527 GN---IELGKQLHGFSIRY-LLDQNV-FV-GT---SLIDMYSKSGVINYAANVFAKIPEK----NSVTYTTMILGYGQHG 593 (813)
Q Consensus 527 ~~---~~~a~~~~~~~~~~-~~~~~~-~~-~~---~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g 593 (813)
.. .+.|..-++.+... +-.|.. .. .. -.+-++.+.|++.++++.|+.+..+ -..+-..+..+|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 12 23444445554442 332321 11 22 3345677899999999999999843 2345667889999999
Q ss_pred ChHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC----------CCC--C-hhHHHH
Q 046631 594 MSERALSLFRSMKGCGI-----EPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK----------IQP--S-TEHYCC 655 (813)
Q Consensus 594 ~~~~A~~~~~~m~~~g~-----~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p--~-~~~~~~ 655 (813)
++++|+.+|+++..... .++......|.-++...+++++|..+++.+.+..- -.| | ...+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 99999999999976431 22333456788899999999999999999987311 013 3 556667
Q ss_pred HHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 656 VADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
++..+...|++.+|++.++++ ...|....++..+...+...|...+|+..++.+..++|++ .......+.++...|+
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~--~~~~~~~~~~al~l~e 499 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS--LILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc--HHHHHHHHHHHHhhhh
Confidence 888899999999999999998 5567777799999999999999999999999999999999 8999999999999999
Q ss_pred cHHHHHHHHHHHHCC
Q 046631 735 WENVDKVRKEMRERG 749 (813)
Q Consensus 735 ~~~A~~~~~~m~~~~ 749 (813)
|++|..+.+++.+..
T Consensus 500 ~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 500 WHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999998887654
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=7.6e-13 Score=139.80 Aligned_cols=613 Identities=14% Similarity=0.095 Sum_probs=332.5
Q ss_pred CCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCC-ChhHhhHHHHHhhcCCCchhh
Q 046631 83 NNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNP-SRFVYNSLLNMYSTCLSSLDA 161 (813)
Q Consensus 83 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a 161 (813)
+|+.++|.+++.++++.. |. ....|..|...+-+.|+.+.+...+-.. ..+.| |...|..+.......
T Consensus 152 rg~~eeA~~i~~EvIkqd--p~-~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~------ 220 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD--PR-NPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSEQL------ 220 (895)
T ss_pred hCCHHHHHHHHHHHHHhC--cc-chhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhc------
Confidence 477777777777777665 33 5666777777777777776665544322 22233 345566666655555
Q ss_pred hhhhhcccccCCCChhHHHHHHcccCCCCcccHHHH---HHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHH----HHH
Q 046631 162 EMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTI---VSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVN----VFP 234 (813)
Q Consensus 162 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~----ll~ 234 (813)
|+++.|+-.|.+..+.++.-|-.+ ...|-+.|+...|.+-|.++.+..-..|..-+.. +++
T Consensus 221 ------------~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 221 ------------GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAH 288 (895)
T ss_pred ------------ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 677777777766664333333322 3445566777777777666665421111112222 233
Q ss_pred HhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHhCCCc
Q 046631 235 ALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLE----RNTEVWNTMIGGYVQNNHP 310 (813)
Q Consensus 235 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~ 310 (813)
.+...++.+.|.+.+......+.. .-+...++.++.+|.+...++.|......+.. +|..-|.+-= .+-
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~-~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~------~~~ 361 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKD-EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE------RRR 361 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccc-cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh------hcc
Confidence 333444445555555544442211 02233344444555554444444444333221 1111110000 000
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchhhhhccCCCCCcchHHHHHHHHHHC
Q 046631 311 VEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNAVIERDVVSWNTMISAFVQN 389 (813)
Q Consensus 311 ~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 389 (813)
.+-..++ . ...++.++... .-+.-++.+....+....+...+.. ... +.-+...|.-+..+|.+.
T Consensus 362 ~~~~~~~-~--~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~----------~~d~~dL~~d~a~al~~~ 427 (895)
T KOG2076|consen 362 EEPNALC-E--VGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVW----------VSDDVDLYLDLADALTNI 427 (895)
T ss_pred ccccccc-c--CCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCC----------hhhhHHHHHHHHHHHHhc
Confidence 0000000 0 00111122222 1222233445555555555555444 211 123566788899999999
Q ss_pred CCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHh
Q 046631 390 GLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFE 469 (813)
Q Consensus 390 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 469 (813)
|++.+|+.+|..+...-..-+...|-.+..++...+..+.|.+.|+.++...+....+...|...|-+.|+.++|.+.+.
T Consensus 428 ~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999876555677888899999999999999999999999998888888899999999999999999999
Q ss_pred hcCCCCCC------------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-----CCC-----------------CHHH
Q 046631 470 KNDSGDRD------------QATWNAMIAGYTQNGLLEEAFVAFRQMLEHN-----VTP-----------------NVVT 515 (813)
Q Consensus 470 ~~~~~~~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-----~~p-----------------~~~t 515 (813)
.+. .|| .-.--.....|.+.|+.++-+.+-..|+... +-| ...+
T Consensus 508 ~~~--~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~ 585 (895)
T KOG2076|consen 508 QII--NPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSEL 585 (895)
T ss_pred ccc--CCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchh
Confidence 876 443 1122334556778888887666655554321 111 1112
Q ss_pred HHHHHHHhccCCChHHHHHHH------HHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----CH---
Q 046631 516 IASVLPACNPMGNIELGKQLH------GFSIRYLLDQNV--FVGTSLIDMYSKSGVINYAANVFAKIPEK-----NS--- 579 (813)
Q Consensus 516 ~~~ll~~~~~~~~~~~a~~~~------~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--- 579 (813)
...++.+-.+.++......-. ......|+..+. ..+.-++..+++.+++++|+.+...+... +.
T Consensus 586 ~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~ 665 (895)
T KOG2076|consen 586 LKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIR 665 (895)
T ss_pred HHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHH
Confidence 222233333333322111111 111112222222 24556778889999999999998877642 22
Q ss_pred -hHHHHHHHHHHhcCChHHHHHHHHHHHhC-CC--CCCHH-HHHHHHHHHhccC--------------------------
Q 046631 580 -VTYTTMILGYGQHGMSERALSLFRSMKGC-GI--EPDAI-TFVAVLSACSYAG-------------------------- 628 (813)
Q Consensus 580 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--~p~~~-~~~~ll~a~~~~g-------------------------- 628 (813)
..-..++.+....+++..|...++.|... +. .|... .|+...+...+.|
T Consensus 666 k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i 745 (895)
T KOG2076|consen 666 KELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALI 745 (895)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeee
Confidence 23345567778889999999999998874 11 22222 3332333333332
Q ss_pred ---------cHHHHHHHHHHHHHhcCCCCChhHHH-HHHHHHhc----------cCCHHHHHHHHHHh---CcCCChHHH
Q 046631 629 ---------LVDEGLQIFDLMQQEYKIQPSTEHYC-CVADMLGR----------VGKVVEAYEFVKEL---GEEGNVLEI 685 (813)
Q Consensus 629 ---------~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~----------~g~~~~A~~~~~~~---~~~~~~~~~ 685 (813)
.+..|+..+-+.. ...||....+ +++-++.. .-..-+++.++++- ....+.-.+
T Consensus 746 ~gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa 822 (895)
T KOG2076|consen 746 YGHNLFVNASFKHALQEYMRAF---RQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEA 822 (895)
T ss_pred echhHhhccchHHHHHHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3344444443333 2245422222 22222210 11122333333322 211123336
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC----------chhHHHHHHHHHhcCCcHHHHHHHHH
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM----------PGYHVLLSNIYAEEGNWENVDKVRKE 744 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (813)
+..++.+|...|-...|..+|+++++..|.+-. ..+-..|.-+|...|+...|..++++
T Consensus 823 ~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 823 FYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 667777777777777788888888777654310 01122244577777877777777654
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=6.2e-13 Score=128.10 Aligned_cols=439 Identities=11% Similarity=0.097 Sum_probs=297.4
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhh--CCCChh-HHHHHHHHHHHhCCCCCCcHHHHHH
Q 046631 192 VAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALS--SLGDYK-SADVVYGLLVKLGSEYVNDLFVASS 268 (813)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~ 268 (813)
++=|.|+. ...+|..+++.-+|+.|++.|+..+...-..+++..+ +..++- .-.+.|-.|.+.|-. ...+|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~---S~~sW-- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED---STSSW-- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc---ccccc--
Confidence 44555554 4457889999999999999998877766555555433 222222 122334444444432 22222
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchH
Q 046631 269 AIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDL 348 (813)
Q Consensus 269 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 348 (813)
+.|++.+ ++-+...+...++..||.++|+--..+.|.++| +.......+.+..+|+.+|.+.+-..+
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~-kE~~~~k~kv~~~aFN~lI~~~S~~~~--- 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELY-KEHRAAKGKVYREAFNGLIGASSYSVG--- 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHH-HHHHHhhheeeHHhhhhhhhHHHhhcc---
Confidence 3344433 555556667889999999999999999999999 777778889999999999987654433
Q ss_pred HHHHHHHHHH-hcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHH----HHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 046631 349 GQQLHAYIIK-NFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDE----GLMLVYEMQKQGFMIDSVTVTALLSAASN 423 (813)
Q Consensus 349 a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 423 (813)
+++..+|.. . ..||..|+|+++.+..+.|+++. |++++.+|++-|+.|...+|..+|.-+++
T Consensus 258 -K~Lv~EMisqk------------m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 258 -KKLVAEMISQK------------MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred -HHHHHHHHHhh------------cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 677777776 4 57999999999999999998864 57789999999999999999999999998
Q ss_pred CCChHH-HHHHHHHHH----HhCCC---Cc--chHHHHHHHHHhcCCHHHHHHHHhhcCCC------CCC---hhhHHHH
Q 046631 424 LRNQDV-GKQTHAYLL----RHGIH---FE--GMESYLIDMYAKSGLIKTARQIFEKNDSG------DRD---QATWNAM 484 (813)
Q Consensus 424 ~~~~~~-a~~~~~~~~----~~~~~---~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~---~~~~~~l 484 (813)
.++..+ +..+...+. ...+. ++ ..+...++.|.+..+.+-|.++-.-+... .|+ ..-|..+
T Consensus 325 e~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~ 404 (625)
T KOG4422|consen 325 ESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKF 404 (625)
T ss_pred cCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHH
Confidence 888754 333333333 22222 22 45566777777888888888877654322 122 2346677
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 046631 485 IAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVI 564 (813)
Q Consensus 485 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 564 (813)
....|+....+.-+..|+.|+-.-+-|+..+...++++....+.++..-+++..++..|.........-+...+++..-
T Consensus 405 ~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~- 483 (625)
T KOG4422|consen 405 FDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL- 483 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC-
Confidence 8888999999999999999999888999999999999999999999999999999988765444433333333333220
Q ss_pred HHHHHHHhhCCCCCHhHHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046631 565 NYAANVFAKIPEKNSVTYTTMILGYGQ--HGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQ 642 (813)
Q Consensus 565 ~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 642 (813)
.|+...-..+-...++ ..-.+.....-.+|.+....| ...+..+-.+.+.|..++|.+++..+.+
T Consensus 484 -----------hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~ 550 (625)
T KOG4422|consen 484 -----------HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLR 550 (625)
T ss_pred -----------CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHh
Confidence 2221111111111111 111122222334555543443 4455555567788889999988888865
Q ss_pred hcCCCCChhHHH---HHHHHHhccCCHHHHHHHHHHh
Q 046631 643 EYKIQPSTEHYC---CVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 643 ~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
...--|.....+ -+++.-.+......|...++-+
T Consensus 551 ~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 551 KHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred cCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 534445444445 4555556777888888888777
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.72 E-value=4.3e-14 Score=147.97 Aligned_cols=483 Identities=12% Similarity=0.055 Sum_probs=278.7
Q ss_pred HHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhccc
Q 046631 90 ILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYV 169 (813)
Q Consensus 90 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 169 (813)
..+|..+...| ..|+..||.++|.-|+..|+++.|- +|.-|.-..+..+..+++.++.+....
T Consensus 10 tnfla~~e~~g--i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A-------------- 72 (1088)
T KOG4318|consen 10 TNFLALHEISG--ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA-------------- 72 (1088)
T ss_pred chHHHHHHHhc--CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccc--------------
Confidence 35677888888 9999999999999999999999998 999998888888889999999988877
Q ss_pred ccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHH-HHHCCCCCCHhhHHHHHHHhhCCCChhHHHHH
Q 046631 170 EVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRM-MLRMGIRPSTISFVNVFPALSSLGDYKSADVV 248 (813)
Q Consensus 170 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 248 (813)
++.+.+. .|...+|+.|..+|.++|+... ++..++ |.. ++..+...|....-..+
T Consensus 73 ----nd~Enpk-------ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~------------i~~sfs~~Gvgs~e~~f 128 (1088)
T KOG4318|consen 73 ----NDAENPK-------EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLES------------INQSFSDHGVGSPERWF 128 (1088)
T ss_pred ----ccccCCC-------CCchhHHHHHHHHHHhccchHH-HHHHHHHHHH------------HHhhhhhhccCcHHHHH
Confidence 5554444 5778899999999999998765 333333 221 22222333332222222
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCC--CcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCC
Q 046631 249 YGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLER--NTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEI 326 (813)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~ 326 (813)
+-.+.-. +.+.||. ...+....-.|-++.+.+++..++.. +. +...+++-......+ ..++. .+.+...-
T Consensus 129 l~k~~c~-p~~lpda---~n~illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntp--vekLl-~~cksl~e 200 (1088)
T KOG4318|consen 129 LMKIHCC-PHSLPDA---ENAILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTP--VEKLL-NMCKSLVE 200 (1088)
T ss_pred HhhcccC-cccchhH---HHHHHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCch--HHHHH-HHHHHhhc
Confidence 2111100 1111333 23444455567778888888777543 11 111134444333333 22333 22222212
Q ss_pred CCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHC
Q 046631 327 VFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQ 405 (813)
Q Consensus 327 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 405 (813)
.|++.+|..+++.....|+.+.|..++..|.+ |++.. ..-|..|+-+ .++...+..+++-|.+.
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir------------~HyFwpLl~g---~~~~q~~e~vlrgmqe~ 265 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR------------AHYFWPLLLG---INAAQVFEFVLRGMQEK 265 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc------------cccchhhhhc---CccchHHHHHHHHHHHh
Confidence 69999999999999999999999999999999 87655 3334445444 88889999999999999
Q ss_pred CCCCCHhHHHHHHHHHhcCCChHHHH-----------HHHHHHHHh-------------------------CCCCc-chH
Q 046631 406 GFMIDSVTVTALLSAASNLRNQDVGK-----------QTHAYLLRH-------------------------GIHFE-GME 448 (813)
Q Consensus 406 g~~pd~~t~~~ll~~~~~~~~~~~a~-----------~~~~~~~~~-------------------------~~~~~-~~~ 448 (813)
|+.|++.|+..-+..+..+|....+. .++..+.+. |++.. .++
T Consensus 266 gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiw 345 (1088)
T KOG4318|consen 266 GVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIW 345 (1088)
T ss_pred cCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHH
Confidence 99999999988877777644322211 111111111 11111 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC-----CCChhhHHHHHHHHHhC----------------------CChHHHHHHH
Q 046631 449 SYLIDMYAKSGLIKTARQIFEKNDSG-----DRDQATWNAMIAGYTQN----------------------GLLEEAFVAF 501 (813)
Q Consensus 449 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~----------------------~~~~~A~~~~ 501 (813)
...+. ....|.-++.+.+-..+... ..++..|..++.-|.+. ....+..++.
T Consensus 346 s~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell 424 (1088)
T KOG4318|consen 346 SMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELL 424 (1088)
T ss_pred HHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHH
Confidence 11111 11134444444444443310 11333443333333211 1111111111
Q ss_pred HHHHH----------------CCCCC-------CHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 046631 502 RQMLE----------------HNVTP-------NVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMY 558 (813)
Q Consensus 502 ~~m~~----------------~~~~p-------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 558 (813)
...+. +-+.| -...-+.++..|++.-+..++...-+.....-+. ..|..||+.+
T Consensus 425 ~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~ 501 (1088)
T KOG4318|consen 425 ENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLM 501 (1088)
T ss_pred HHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhH
Confidence 11100 00011 0112334455555555555555433333322211 4588888888
Q ss_pred HhcCCHHHHHHHHhhCCCCC------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhccCcH
Q 046631 559 SKSGVINYAANVFAKIPEKN------SVTYTTMILGYGQHGMSERALSLFRSMKGCGI-EPD-AITFVAVLSACSYAGLV 630 (813)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~ll~a~~~~g~~ 630 (813)
+....++.|..+.+++..+| ..-+..+.+.+.+.+....+..++.++.+.-. .|+ ..++..++..-...|+.
T Consensus 502 ~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqq 581 (1088)
T KOG4318|consen 502 DLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQ 581 (1088)
T ss_pred HHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCH
Confidence 88888888888888877553 34567777777888888888888888776422 221 33455555555566665
Q ss_pred HHHHHHHHHH
Q 046631 631 DEGLQIFDLM 640 (813)
Q Consensus 631 ~~a~~~~~~~ 640 (813)
+...++++-+
T Consensus 582 e~Lkkl~d~l 591 (1088)
T KOG4318|consen 582 EKLKKLADIL 591 (1088)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=2.2e-12 Score=136.47 Aligned_cols=549 Identities=11% Similarity=0.035 Sum_probs=370.4
Q ss_pred CChhHHHHHHcccCCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHhhCCCChhHHHHHH
Q 046631 174 SKYDLVCKVFDTMRRR---NVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRP-STISFVNVFPALSSLGDYKSADVVY 249 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 249 (813)
|++++|.+++.++.+. +...|.+|...|-..|+.++++..+-..-. ..| |..-|..+-.-..+.|++++|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999999999999863 567899999999999999999887755443 444 4457888888888999999999999
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCc----c----hHHHHHHHHHhCCCchHHHHHHHHHH
Q 046631 250 GLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNT----E----VWNTMIGGYVQNNHPVEAIELFVQVL 321 (813)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~A~~~~~~~m 321 (813)
..+++..+. +....-.-+.+|-+.|+...|..-|.++...+. . .--.++..+...+.-+.|++.+....
T Consensus 231 ~rAI~~~p~---n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 231 SRAIQANPS---NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHhcCCc---chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999865 555666678899999999999998888755322 1 22234667777788899999997877
Q ss_pred HhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchhhhhcc---------C-CCCCcchHHH----HHHHH
Q 046631 322 ELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNA---------V-IERDVVSWNT----MISAF 386 (813)
Q Consensus 322 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~---------~-~~~~~~~~~~----li~~~ 386 (813)
...+-..+..+++.+...+.+...++.+......... ....++....+. + ..++..+|+. ++-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 7666677777888889999888888888776666554 322222221110 0 1222222222 23344
Q ss_pred HHCCCcHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHH
Q 046631 387 VQNGLDDEGLMLVYEMQKQGF--MIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKT 463 (813)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~--~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 463 (813)
......+....+..-..+..+ .-+...|.-+..++...|.+..|..++..+........ .++-.+..+|...|.++.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 445555555555555555553 33455788899999999999999999999998877666 899999999999999999
Q ss_pred HHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHhccCCChHHHHH
Q 046631 464 ARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLE--------HNVTPNVVTIASVLPACNPMGNIELGKQ 534 (813)
Q Consensus 464 A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--------~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 534 (813)
|.+.|+......| +...--.|...+-+.|+.++|++.+..+.. .+..|+..........+...|+.++-..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999876677 555667788889999999999999998652 2344555555555566677777776544
Q ss_pred HHHHHHHcC-----C-----------------CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCCH----h
Q 046631 535 LHGFSIRYL-----L-----------------DQNVFVGTSLIDMYSKSGVINYAANVFAKIP--------EKNS----V 580 (813)
Q Consensus 535 ~~~~~~~~~-----~-----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~----~ 580 (813)
+...|+... + .-.......++.+-.+.++.....+-...-. .-.. .
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 443333211 1 1111122233333333333222222111110 1112 2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC---hhH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGI--EPDA---ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS---TEH 652 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~ 652 (813)
.+.-++..+++.+++++|+.+...+....+ .++. ..-...+.++...+++..|...++.|...++...+ ...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 345567788899999999999988877532 2222 12234455777899999999999999877555444 556
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh-CcCCCh-HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKEL-GEEGNV-LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
|++....+.+.|+-.-=.+++..+ ...++. +.....-+.-....+.+.-|...+-++....|++ |....++|-++
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~--Pl~nl~lglaf 784 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDS--PLINLCLGLAF 784 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCC--cHHHHHHHHHH
Confidence 666666666666544444554443 222222 1111112233344567888999999999999998 77777665543
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=2.4e-11 Score=123.54 Aligned_cols=580 Identities=12% Similarity=0.070 Sum_probs=376.5
Q ss_pred CCcchHHHhhhcC---CCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHH
Q 046631 53 GRPHLARQLFDSI---TRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAV 129 (813)
Q Consensus 53 g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 129 (813)
|++..|+.++.+- ...+-..|---+ +-..++.|..+........ |. ++..| +.|.--..+...-.++
T Consensus 299 gKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA~Avr~~--P~-Sv~lW---~kA~dLE~~~~~K~RV 368 (913)
T KOG0495|consen 299 GKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVANAVRFL--PT-SVRLW---LKAADLESDTKNKKRV 368 (913)
T ss_pred hHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHHHHHHhC--CC-Chhhh---hhHHhhhhHHHHHHHH
Confidence 9999999988643 234444453322 2234556666666666543 22 22222 2222122233334455
Q ss_pred HHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhH
Q 046631 130 HCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVE 209 (813)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (813)
+...++. ++.++..|...+.. ...++|+-++.+..+--+ +-..|..+|++..-|+.
T Consensus 369 lRKALe~-iP~sv~LWKaAVel----------------------E~~~darilL~rAveccp-~s~dLwlAlarLetYen 424 (913)
T KOG0495|consen 369 LRKALEH-IPRSVRLWKAAVEL----------------------EEPEDARILLERAVECCP-QSMDLWLALARLETYEN 424 (913)
T ss_pred HHHHHHh-CCchHHHHHHHHhc----------------------cChHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence 5555544 35556666665543 444456666655543111 11223445556666777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHH----HHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 046631 210 AVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLL----VKLGSEYVNDLFVASSAIFMYAELGCFDFARKI 285 (813)
Q Consensus 210 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 285 (813)
|..++...++. ++-+...|.+....--..|+.+...++.+.. ...|+. .+..-|-.=...+-+.|
T Consensus 425 AkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~--i~rdqWl~eAe~~e~ag-------- 493 (913)
T KOG0495|consen 425 AKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE--INRDQWLKEAEACEDAG-------- 493 (913)
T ss_pred HHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee--ecHHHHHHHHHHHhhcC--------
Confidence 77777777664 4445555655555445666666666665543 334544 33333322222222222
Q ss_pred HhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchh
Q 046631 286 FDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPV 365 (813)
Q Consensus 286 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 365 (813)
.+.|..++|.+..--|.-++- -..|+..--..|.+.+.++-+..++...++-+
T Consensus 494 -------sv~TcQAIi~avigigvEeed---------------~~~tw~~da~~~~k~~~~~carAVya~alqvf----- 546 (913)
T KOG0495|consen 494 -------SVITCQAIIRAVIGIGVEEED---------------RKSTWLDDAQSCEKRPAIECARAVYAHALQVF----- 546 (913)
T ss_pred -------ChhhHHHHHHHHHhhccccch---------------hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-----
Confidence 233333333332222211100 11233444444555555555555555555422
Q ss_pred hhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc
Q 046631 366 IVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE 445 (813)
Q Consensus 366 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 445 (813)
+.+...|...+..=-..|..+.-..+|++.... ++-....|.....-.-..|+...|..++..+.+..+...
T Consensus 547 -------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse 618 (913)
T KOG0495|consen 547 -------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE 618 (913)
T ss_pred -------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH
Confidence 223455666665556667778888888888776 222333444444445566888888888888888888866
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhc
Q 046631 446 GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVV-TIASVLPACN 524 (813)
Q Consensus 446 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~ 524 (813)
.++.+-+..-.....++.|..+|.+.....|....|.--+..---.++.++|++++++.++. -|+.. .|..+-..+-
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 88888899999999999999999998877888888888887778889999999999988874 56654 4555556667
Q ss_pred cCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--C-CCHhHHHHHHHHHHhcCChHHHHHH
Q 046631 525 PMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--E-KNSVTYTTMILGYGQHGMSERALSL 601 (813)
Q Consensus 525 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~ 601 (813)
+.++++.|...|..=.+. ++..+-.|-.|...=-+.|.+-+|..+|++.. . .|...|-..|..-.+.|+.+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 777777777665543332 23455678888888889999999999999876 3 3788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCC
Q 046631 602 FRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEG 680 (813)
Q Consensus 602 ~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 680 (813)
..+.++. ++.+...|..-|...-+.++-......+ . ..+.|+.+...+..++....++++|.+.|.+. ...|
T Consensus 776 makALQe-cp~sg~LWaEaI~le~~~~rkTks~DAL---k---kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 776 MAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDAL---K---KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHh-CCccchhHHHHHHhccCcccchHHHHHH---H---hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9988875 4556667888887776666644444433 2 45678888899999999999999999999987 6678
Q ss_pred ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHH
Q 046631 681 NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVL 724 (813)
Q Consensus 681 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~ 724 (813)
+..++|..+...+.++|.-+.-.+++.+....+|.. ...+..
T Consensus 849 d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h--G~~W~a 890 (913)
T KOG0495|consen 849 DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH--GELWQA 890 (913)
T ss_pred ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC--CcHHHH
Confidence 888899999999999999999999999999999987 544443
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=3.9e-13 Score=130.11 Aligned_cols=480 Identities=13% Similarity=0.089 Sum_probs=288.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHH-HHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Q 046631 197 IVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFV-NVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAE 275 (813)
Q Consensus 197 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 275 (813)
|..-|..+..+.+|+..++-+.+...-|+.-... .+-+.+.+.+.+..|.++|+..+..-+. .+..+.
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvps--ink~~r--------- 275 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPS--INKDMR--------- 275 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccc--cchhhH---------
Confidence 3455666677778888888777666666654322 2333445566677777777766655433 111111
Q ss_pred cCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHH
Q 046631 276 LGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAY 355 (813)
Q Consensus 276 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 355 (813)
+...|.+--.+.+.|.+++|+..|+..|.. .|+-.+-..++-++...|+.+..++.|..
T Consensus 276 ------------------ikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~k 334 (840)
T KOG2003|consen 276 ------------------IKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQK 334 (840)
T ss_pred ------------------HHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHH
Confidence 112222333355666666666666555543 35555544444445555666666666666
Q ss_pred HHH--hcccchhhhhccCCCCCcchHHHHHH-----HHHHCC--CcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCC
Q 046631 356 IIK--NFVALPVIVLNAVIERDVVSWNTMIS-----AFVQNG--LDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRN 426 (813)
Q Consensus 356 ~~~--~~~~~~~~~~~~~~~~~~~~~~~li~-----~~~~~g--~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 426 (813)
++. +...++.++. .-..|+....|..|. ..-+.. +.++++-.--.+..--+.||-.
T Consensus 335 li~ip~~~dddkyi~-~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-------------- 399 (840)
T KOG2003|consen 335 LIDIPGEIDDDKYIK-EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-------------- 399 (840)
T ss_pred HhcCCCCCCcccccC-CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh--------------
Confidence 665 3333311211 112233333333222 111111 1122222222222211222211
Q ss_pred hHHHHH-HHHHHHHhCCCCc--chHHHHHHHHHhcCCHHHHHHHHhhcCCCCC---ChhhHHHHHHHHHhCC-ChHHHHH
Q 046631 427 QDVGKQ-THAYLLRHGIHFE--GMESYLIDMYAKSGLIKTARQIFEKNDSGDR---DQATWNAMIAGYTQNG-LLEEAFV 499 (813)
Q Consensus 427 ~~~a~~-~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~~A~~ 499 (813)
.+-. .++.+......+- .+-..-..-|.+.|+++.|+++++-..+.+. +...-|.-+--|.+.| ++..|..
T Consensus 400 --~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 400 --AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred --cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 1111 1111111111000 1112234457899999999999887763322 1122222233344433 4566666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---C
Q 046631 500 AFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---E 576 (813)
Q Consensus 500 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~ 576 (813)
.-+...... .-+......--+.....|+++.|...+.+.....-.-....|| +.-.+-+.|++++|++.|-++. .
T Consensus 478 yad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 478 YADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred HHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHH
Confidence 555444321 1122222222223345789999999999988764332233333 2334778999999999998765 4
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHH
Q 046631 577 KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCC 655 (813)
Q Consensus 577 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 655 (813)
.+......+.+.|-...+..+|++++-+.... ++.|+..+.-|...|-+.|+-.+|.+.+-.- |...| +..+...
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iew 631 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEW 631 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHH
Confidence 67888888899999999999999999988874 5667778999999999999999999876544 35566 6999999
Q ss_pred HHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHH-HHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcC
Q 046631 656 VADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSC-RLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEG 733 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g 733 (813)
|..-|....-+++|+.+|++. ..+|+.. -|..++..| ++.|++++|...++......|.+ ...+-.|..+....|
T Consensus 632 l~ayyidtqf~ekai~y~ekaaliqp~~~-kwqlmiasc~rrsgnyqka~d~yk~~hrkfped--ldclkflvri~~dlg 708 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAALIQPNQS-KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED--LDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCccHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc--hHHHHHHHHHhcccc
Confidence 999999999999999999997 4677777 898887666 56799999999999999999999 888888888776665
Q ss_pred C
Q 046631 734 N 734 (813)
Q Consensus 734 ~ 734 (813)
-
T Consensus 709 l 709 (840)
T KOG2003|consen 709 L 709 (840)
T ss_pred c
Confidence 3
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.63 E-value=5.7e-12 Score=132.41 Aligned_cols=630 Identities=11% Similarity=0.017 Sum_probs=326.2
Q ss_pred ccccccCCCCCCCCchhhhHHHHHhhc-CCcchHHHhhhcCCCC----CcchHHHHHHHHhcCCChhHHHHHHHHHHhcC
Q 046631 26 QIHSLSPPIPKLKTPTIRSRLSKICQE-GRPHLARQLFDSITRP----TTVIWNTIIIGFVCNNLPYEAILLYSQMKKSS 100 (813)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 100 (813)
.++..+...|+.|....+.+++.-|+. |+.+.|. +|..|.-. +-..++.++.+..+.++.+.+-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 344555667888888889999999998 9999888 88777542 3346888888888877765443
Q ss_pred CCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHH-------hCC-----------------CCCh----------hHhh
Q 046631 101 PYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIR-------CFS-----------------NPSR----------FVYN 146 (813)
Q Consensus 101 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~-----------------~~~~----------~~~~ 146 (813)
.|...||..|+.+|.+.||+..-..+-+.+.. .|+ -||. ..|.
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 44667999999999999987653222221211 111 1111 0112
Q ss_pred HHHHHhhcCCCchhh-hh-hhhcccccCCCChhHHHHHHcccC-CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCC
Q 046631 147 SLLNMYSTCLSSLDA-EM-VGLKYVEVDYSKYDLVCKVFDTMR-RRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIR 223 (813)
Q Consensus 147 ~li~~~~~~~~~~~a-~~-~~~~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 223 (813)
.++....++.....- -. +.++-....+..+++-........ .++..+|..++.+-..+|+.+.|..++..|++.|+.
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 222222111000000 00 000001111222222222222222 267788999999989999999999999999999998
Q ss_pred CCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHH
Q 046631 224 PSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGG 303 (813)
Q Consensus 224 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 303 (813)
.+..-|-.++-+ .++...+..+.+-|.+.|+. |+..++..-+-.....|....+....+.-..-....+..+.++
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~--p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQ--PGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCC--CCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 888877777654 78888888999999999988 9888887666555554432222111110000000111111111
Q ss_pred ---------------------------------------HHhCCCchHHHHHHHHHHHhC--CCCC-ChhhHHHHHHHhc
Q 046631 304 ---------------------------------------YVQNNHPVEAIELFVQVLELD--EIVF-DDVTFLSALSAVS 341 (813)
Q Consensus 304 ---------------------------------------~~~~g~~~~A~~~~~~~m~~~--g~~p-~~~t~~~ll~~~~ 341 (813)
...+|.-++..++. ..|..- .+.+ +...|...+.-
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlv-g~l~npt~r~s~~~V~a~~~~lrq-- 388 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLV-GQLLNPTLRDSGQNVDAFGALLRQ-- 388 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHH-hhhcCCccccCcchHHHHHHHHHH--
Confidence 11123333333333 222110 0111 01112222221
Q ss_pred ccCcchHHHHHHHHHHHhcccchhhhhccC------------------CCC-----------------Cc----------
Q 046631 342 QLQELDLGQQLHAYIIKNFVALPVIVLNAV------------------IER-----------------DV---------- 376 (813)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------------------~~~-----------------~~---------- 376 (813)
.|.++.+-....+..++..+ ..| ..
T Consensus 389 ----------yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~i 458 (1088)
T KOG4318|consen 389 ----------YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLI 458 (1088)
T ss_pred ----------HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence 11111110000000000000 000 00
Q ss_pred -chHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CCc-chHHHHH
Q 046631 377 -VSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGI--HFE-GMESYLI 452 (813)
Q Consensus 377 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~-~~~~~l~ 452 (813)
..-+.++..++..-+..+++..-+.....-+ + ..|..||.-++.....+.|..+.++...... ..+ ..+..+.
T Consensus 459 rdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 459 RDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 1112233334443344444333222222111 1 3466666666666667777666666654432 223 4556667
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC---CCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCC
Q 046631 453 DMYAKSGLIKTARQIFEKNDSG---DRD-QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGN 528 (813)
Q Consensus 453 ~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 528 (813)
+...+.+...++..+++++.+. .|+ ..+.-.++..-+..|+.+...++++-+...|+.-+ ..++....+.++
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd 611 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDD 611 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccc
Confidence 7777777777777777665532 121 12334455555666776666666666655554331 122223333344
Q ss_pred hHHHHHHHHH-----------------HHHcCCCCchhHH---HHHHHHHHhcCCHHHHHHHHhhCC---C-C-------
Q 046631 529 IELGKQLHGF-----------------SIRYLLDQNVFVG---TSLIDMYSKSGVINYAANVFAKIP---E-K------- 577 (813)
Q Consensus 529 ~~~a~~~~~~-----------------~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~---~-~------- 577 (813)
...+.+.++. +...+-.-++... ..=+..|.++|+..+|.++.+.-. + +
T Consensus 612 ~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de 691 (1088)
T KOG4318|consen 612 QSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDE 691 (1088)
T ss_pred hhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCcccccc
Confidence 4444433332 2222111111111 111234777888877777766422 0 0
Q ss_pred --------------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHH
Q 046631 578 --------------NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAG---LVDEGLQIFDLM 640 (813)
Q Consensus 578 --------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~ 640 (813)
+.....-|+..|.+.|+++.|..+|.++. +.|+..+...|+..+.+.. ++.++....++.
T Consensus 692 ~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~eka 768 (1088)
T KOG4318|consen 692 GEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKA 768 (1088)
T ss_pred CccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHH
Confidence 11122347788999999999999999998 7888888888877766543 455555555555
Q ss_pred HHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCC--ChHHHHHHHHHHHHHhC
Q 046631 641 QQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEG--NVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 641 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 697 (813)
.+.+...|. ...|.--+...++....+.|.+.+.+..++. ...+.+..+++++....
T Consensus 769 s~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 769 SELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred HhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 443333343 3333333444455556668889998885543 33445666666665443
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=5.2e-15 Score=148.63 Aligned_cols=256 Identities=16% Similarity=0.140 Sum_probs=115.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 046631 485 IAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIAS-VLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGV 563 (813)
Q Consensus 485 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 563 (813)
...+.+.|++++|++++++.......|+...|-. +...+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 3444455555555555543332221233333222 222333445555555555555544322 34445666666 68888
Q ss_pred HHHHHHHHhhCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 046631 564 INYAANVFAKIP--EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCG-IEPDAITFVAVLSACSYAGLVDEGLQIFDLM 640 (813)
Q Consensus 564 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 640 (813)
+++|.++++..- .++...+..++..+...++++++.++++++.... .+.+...|..+...+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888887664 3567778888889999999999999999987643 3456667888888999999999999999999
Q ss_pred HHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcC-CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Q 046631 641 QQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEE-GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM 718 (813)
Q Consensus 641 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 718 (813)
.+. .|+ ......++..+...|+.+++.++++..... |..+..|..+..++...|+.++|...+++++...|++
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-- 247 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-- 247 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT---
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc--
Confidence 965 785 888899999999999999988888877433 4455589999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 719 PGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 719 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+.....+++++...|+.++|..++++..+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999887653
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=3.6e-12 Score=123.55 Aligned_cols=434 Identities=12% Similarity=0.129 Sum_probs=292.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHH-HHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcc
Q 046631 299 TMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFL-SALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVV 377 (813)
Q Consensus 299 ~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (813)
.|.+-|..+....+|+..| +.+.+..+-|+...+. .+-..+.+.+.+..|.++++......+.-. ...-+.
T Consensus 206 nlaqqy~~ndm~~ealnty-eiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin-------k~~rik 277 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTY-EIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN-------KDMRIK 277 (840)
T ss_pred HHHHHhhhhHHHHHHhhhh-hhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc-------hhhHHH
Confidence 3556677778888999999 7777777777766543 233455677778888888877766221110 011123
Q ss_pred hHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-c--------hH
Q 046631 378 SWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-G--------ME 448 (813)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~--------~~ 448 (813)
..+.+-..|.+.|+++.|+..|+...+. .|+-.+-..|+-++...|+-+...+.|..++.....++ . ..
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 4555566788999999999999998775 68887777777777788999999999999887543222 1 11
Q ss_pred HHHHHHHHhcC--------CHHHHHHHHh---hcC--CCCCChhh---H----------H--------HHHHHHHhCCCh
Q 046631 449 SYLIDMYAKSG--------LIKTARQIFE---KND--SGDRDQAT---W----------N--------AMIAGYTQNGLL 494 (813)
Q Consensus 449 ~~l~~~~~~~g--------~~~~A~~~~~---~~~--~~~~~~~~---~----------~--------~li~~~~~~~~~ 494 (813)
..|+.--.+.. +-..|.+..- ++. -..|+... | . .-..-|.++|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 22222222211 1112222221 111 11222110 1 0 112347899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH--HHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 046631 495 EEAFVAFRQMLEHNVTPNVVTIA--SVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFA 572 (813)
Q Consensus 495 ~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 572 (813)
+.|+++++-+.+..-+.-...-+ ..+.-+....++..|.++-+...... .-+....+.-...-...|++++|.+.|+
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 99999998877654332222222 22222222345666666655544321 1111112222223345789999999999
Q ss_pred hCCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-
Q 046631 573 KIPEKNSVTYTTMI---LGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP- 648 (813)
Q Consensus 573 ~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p- 648 (813)
+....|...-.+|. -.+-..|+.++|++.|-++..- +..+...+..+...|....+..+|++++.+.. .+.|
T Consensus 515 eal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~---slip~ 590 (840)
T KOG2003|consen 515 EALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SLIPN 590 (840)
T ss_pred HHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---ccCCC
Confidence 99987765544443 3567889999999999887653 34456677788889999999999999987776 6677
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHH-HHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHH
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEF-VKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSN 727 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~ 727 (813)
|+..+..|.++|-+.|+-..|.+. ++.-.--|-..++...|...|....-.++++..++++--+.|.. ..+..+++.
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~--~kwqlmias 668 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ--SKWQLMIAS 668 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH--HHHHHHHHH
Confidence 599999999999999999999987 44445566666677888888888888999999999999999998 788888999
Q ss_pred HHHhcCCcHHHHHHHHHHHHCC
Q 046631 728 IYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 728 ~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
++.+.|++..|.++++....+-
T Consensus 669 c~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhC
Confidence 9999999999999999988653
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.1e-11 Score=117.20 Aligned_cols=284 Identities=13% Similarity=0.084 Sum_probs=197.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC-CCChhhH-HHHHHHHHhCCChHHHHHHHHHHHHCCC-C-CCHHHHHHHHHHhccCC
Q 046631 452 IDMYAKSGLIKTARQIFEKNDSG-DRDQATW-NAMIAGYTQNGLLEEAFVAFRQMLEHNV-T-PNVVTIASVLPACNPMG 527 (813)
Q Consensus 452 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~~~-~-p~~~t~~~ll~~~~~~~ 527 (813)
..+|-.....+++..-.+...+. -|+..-+ +....+.-...++++|+.+|+++.+... . -|..+|+.++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 33444444444444444443322 2322222 2222333445566666666666665421 0 13445555543322211
Q ss_pred ChH-HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHH
Q 046631 528 NIE-LGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFR 603 (813)
Q Consensus 528 ~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 603 (813)
.+. .|..++ .-..+ -+.+...+.+.|+-.++.++|...|++..+ .....|+.|..-|...++...|++-++
T Consensus 314 kLs~LA~~v~---~idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 KLSYLAQNVS---NIDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHH---HhccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 111 011111 11122 234566777888889999999999998874 356789999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCCh
Q 046631 604 SMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELGEEGNV 682 (813)
Q Consensus 604 ~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 682 (813)
..++-+ +-|-..|..|..+|...+...-|+-+|++.. .++| |.+.|.+|+++|.+.++.++|++-|++.-.-++.
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 999942 4466799999999999999999999999988 6788 5999999999999999999999999998554443
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHhc-------CCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 683 -LEIWGSLLGSCRLHGHSELAEVVAKKLLE-------MDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 683 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
..++..|+..+.+.++.++|...+++.++ .+|.- ..+...|+.-+.+.+++++|..+-....
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t--~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET--IKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH--HHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 33899999999999999999999999887 33332 4556678888999999999998776655
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=1.1e-11 Score=130.37 Aligned_cols=278 Identities=10% Similarity=0.012 Sum_probs=195.1
Q ss_pred cCCHHHHHHHHhhcCCCCCChhhHHHH-HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHhccCCChHHHHH
Q 046631 458 SGLIKTARQIFEKNDSGDRDQATWNAM-IAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIA--SVLPACNPMGNIELGKQ 534 (813)
Q Consensus 458 ~g~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~ 534 (813)
.|+++.|.+.+.......++...+..+ .....+.|+++.|.+.|.++.+. .|+...+. .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 477777777766654322223333222 33336677777777777777653 44443222 22445666777777777
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CH--------hHHHHHHHHHHhcCChHHHHHHHH
Q 046631 535 LHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK---NS--------VTYTTMILGYGQHGMSERALSLFR 603 (813)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~~ 603 (813)
.++.+.+.. +-++.+...+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777776665 335667777888888888888888888777632 11 133344444444555666677777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCCh
Q 046631 604 SMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNV 682 (813)
Q Consensus 604 ~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 682 (813)
.+.+. .+.+......+..++...|+.++|..++++..+. .|+.... ++......|+.+++.+.+++. +.+|+.
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 3456678888889999999999999999888753 4555333 233334568999999998887 667888
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 683 LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+..+..++..|...+++++|...++++++..|++ ..+..++.++.+.|+.++|..++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~---~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA---YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8788899999999999999999999999999985 5567899999999999999999987754
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.1e-09 Score=107.51 Aligned_cols=498 Identities=13% Similarity=0.113 Sum_probs=289.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 046631 194 WNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMY 273 (813)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 273 (813)
|--....--.++++..|..+|++.+... .-+...|.--+..-.+...+..|+.+++.++..-+. -| ..|-..+.+-
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR--Vd-qlWyKY~ymE 151 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR--VD-QLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch--HH-HHHHHHHHHH
Confidence 3333333344667777888888777643 334445555556656777777888888877776543 22 3344455555
Q ss_pred HhcCChHHHHHHHhhcC--CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHH
Q 046631 274 AELGCFDFARKIFDNCL--ERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQ 351 (813)
Q Consensus 274 ~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 351 (813)
-..|++..|+++|++-. +|+...|++.|..-.+-..++.|..+|.+... +.|+..+|.-....=-+.|....+.+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 56677788888877653 46777788888777777777777777743332 34666666555555555555555555
Q ss_pred HHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHH
Q 046631 352 LHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGK 431 (813)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~ 431 (813)
++..++.-+..+ .-+...+ .+...--.++..++.|.
T Consensus 229 VyerAie~~~~d---------~~~e~lf-----------------------------------vaFA~fEe~qkE~ERar 264 (677)
T KOG1915|consen 229 VYERAIEFLGDD---------EEAEILF-----------------------------------VAFAEFEERQKEYERAR 264 (677)
T ss_pred HHHHHHHHhhhH---------HHHHHHH-----------------------------------HHHHHHHHHHHHHHHHH
Confidence 555554411111 0011111 11111222334445555
Q ss_pred HHHHHHHHhCCCCc--chHHHHHHHHHhcCCHHHHHHH--------HhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHH
Q 046631 432 QTHAYLLRHGIHFE--GMESYLIDMYAKSGLIKTARQI--------FEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVA 500 (813)
Q Consensus 432 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~--------~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~ 500 (813)
.+|...+.+-+... .++..+...--+-|+.....+. ++.+....| |-.+|--.+..-...|+.+...++
T Consensus 265 ~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~ 344 (677)
T KOG1915|consen 265 FIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRET 344 (677)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHH
Confidence 55555555544443 4444444444444443332222 122332234 666777777777777888888888
Q ss_pred HHHHHHCCCCCCH-------HHHHHHHHHh---ccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH----HhcCCHHH
Q 046631 501 FRQMLEHNVTPNV-------VTIASVLPAC---NPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMY----SKSGVINY 566 (813)
Q Consensus 501 ~~~m~~~~~~p~~-------~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~ 566 (813)
|++.+.. ++|-. ..|.-+=-+| ....+++.+.++++..++ -++....++.-+=-+| .++.++..
T Consensus 345 yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ 422 (677)
T KOG1915|consen 345 YERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTG 422 (677)
T ss_pred HHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHH
Confidence 8877764 44422 1111111111 235677777777777776 2333444444443333 46778888
Q ss_pred HHHHHhhCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 046631 567 AANVFAKIP--EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEY 644 (813)
Q Consensus 567 A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 644 (813)
|.+++.... .|...+|...|..-.+.++++....++++.++-+ +-+..+|......-...|+.+.|..+|.-++..-
T Consensus 423 ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 423 ARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 888887766 4667778888888888888888888888888843 2344577777776777888888888888877652
Q ss_pred CCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcC-CChHHHHHHHHHHHH-----HhC-----------CHHHHHHHHH
Q 046631 645 KIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEE-GNVLEIWGSLLGSCR-----LHG-----------HSELAEVVAK 707 (813)
Q Consensus 645 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~ 707 (813)
.+.--...|...|+-=...|.++.|..+++++... +... +|-++...-. +.+ +...|..+|+
T Consensus 502 ~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~ife 580 (677)
T KOG1915|consen 502 ALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFE 580 (677)
T ss_pred ccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHH
Confidence 22222555667777777888888888888887433 3444 7777665444 223 4567788888
Q ss_pred HHhc----CCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 708 KLLE----MDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 708 ~~~~----~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
++.. .+|.......+...-+.-...|...+...+-.+|.
T Consensus 581 rAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 581 RANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 7764 33432111111112222334465555555555554
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=8.8e-11 Score=115.67 Aligned_cols=214 Identities=14% Similarity=0.124 Sum_probs=173.2
Q ss_pred cCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 046631 525 PMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSL 601 (813)
Q Consensus 525 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 601 (813)
-.|+.-.+..-++..+.....++. .|--+..+|....+.++-+..|++..+ .|+.+|..-...+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 357778888888888876543332 266666779999999999999998773 4777888888888888999999999
Q ss_pred HHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-Cc
Q 046631 602 FRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GE 678 (813)
Q Consensus 602 ~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 678 (813)
|++.++ +.|+.. .|..+.-+..+.+.++++...|++.+++ -|+ ++.|+....++...+++++|.+.|+.. ..
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK---FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 999998 566544 6777777777899999999999999977 476 899999999999999999999999986 33
Q ss_pred CCC--------hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 679 EGN--------VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 679 ~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+|. .+.+..+++ .++-.+|+.+|+.+++++++++|.. -..|..|+.+-...|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkc--e~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKC--EQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 332 221333333 3334589999999999999999998 88999999999999999999999998764
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=2e-12 Score=132.47 Aligned_cols=277 Identities=13% Similarity=0.030 Sum_probs=202.3
Q ss_pred CCHHHHHHHHhhcCCCCCChh-hHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHhccCCChHHHHHH
Q 046631 459 GLIKTARQIFEKNDSGDRDQA-TWNAMIAGYTQNGLLEEAFVAFRQMLEHN--VTPNVVTIASVLPACNPMGNIELGKQL 535 (813)
Q Consensus 459 g~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~ 535 (813)
-+..+|...|..++...+|+. ....+..+|...+++++|.++|+...+.. ..-+..+|++++..+-+.- +...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 356789999999876667665 34566788999999999999999988742 1125567777776543321 1222
Q ss_pred HH-HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 046631 536 HG-FSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIE 611 (813)
Q Consensus 536 ~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 611 (813)
+. .+.+. -+-.+.+|.++..+|.-+++.+.|++.|++..+ | ...+|+.+..-+.....++.|...|+..+. +.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 22 22222 234567888888888888888888888888774 3 456777777778888888888888888775 45
Q ss_pred CCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHH
Q 046631 612 PDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGS 688 (813)
Q Consensus 612 p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~ 688 (813)
|... .|..+...|.+.++++.|.-.|+++. .+.|. .....+++..+.+.|+.|+|+++++++ ..+|..+..-..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 5443 56667777888888888888888777 67884 777778888888888888888888886 344433334444
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 689 LLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 689 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
-+..+...+++++|...++++.++-|++ ...+.+++.+|.+.|+.+.|..-|.-|.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~e--s~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQE--SSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcch--HHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 5566666788888888888888888888 88888888888888888888887766663
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=9.4e-10 Score=107.98 Aligned_cols=449 Identities=10% Similarity=0.072 Sum_probs=284.4
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHH
Q 046631 70 TVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLL 149 (813)
Q Consensus 70 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (813)
...|-....--..+++...|..+|++.+... . .+...|.--+..=.+...+..|..+++..+..-...|. .|-..+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd--~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ 148 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD--Y-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--c-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHH
Confidence 3345444455555678889999999998754 2 25666777778778888999999999988876433333 222222
Q ss_pred HHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccC--CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh
Q 046631 150 NMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMR--RRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTI 227 (813)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 227 (813)
.+=-.. |++..|+++|++.. +|+..+|++.|.--.+-..++.|..++++..- +.|++.
T Consensus 149 ymEE~L------------------gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~ 208 (677)
T KOG1915|consen 149 YMEEML------------------GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVS 208 (677)
T ss_pred HHHHHh------------------cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHH
Confidence 222222 99999999999876 69999999999999999999999999999887 579999
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCC----C-CcchHHHHHH
Q 046631 228 SFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLE----R-NTEVWNTMIG 302 (813)
Q Consensus 228 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~ 302 (813)
+|.--.+.--+.|....++++|..+++.-..-..+...+.+....-.++..++.|.-+|+-... . ....|..+..
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTA 288 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 9988888888999999999999988875422002334455555555567778888887764432 2 1233444443
Q ss_pred HHHhCCCchHHHHHHH--HHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHH
Q 046631 303 GYVQNNHPVEAIELFV--QVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWN 380 (813)
Q Consensus 303 ~~~~~g~~~~A~~~~~--~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (813)
.--+-|+.....+... +.++ ++...+. .+-|-.+|-
T Consensus 289 fEKqfGd~~gIEd~Iv~KRk~q------------------------------YE~~v~~------------np~nYDsWf 326 (677)
T KOG1915|consen 289 FEKQFGDKEGIEDAIVGKRKFQ------------------------------YEKEVSK------------NPYNYDSWF 326 (677)
T ss_pred HHHHhcchhhhHHHHhhhhhhH------------------------------HHHHHHh------------CCCCchHHH
Confidence 3334454444333320 1111 1111110 122344555
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHh-------HHHHHHHHH---hcCCChHHHHHHHHHHHHhCCCCcchHH-
Q 046631 381 TMISAFVQNGLDDEGLMLVYEMQKQGFMIDSV-------TVTALLSAA---SNLRNQDVGKQTHAYLLRHGIHFEGMES- 449 (813)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-------t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 449 (813)
-.+..--..|+.+...++|+..... ++|-.. .|.-+=-+| ....+.+.+.+++...++.-+.....+.
T Consensus 327 dylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaK 405 (677)
T KOG1915|consen 327 DYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAK 405 (677)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHH
Confidence 5555555567777777777776654 344221 111111111 2345666677777766664333333332
Q ss_pred ---HHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 046631 450 ---YLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPM 526 (813)
Q Consensus 450 ---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 526 (813)
.....-.++.++..|.+++....+..|..-+|-..|..=.+.++++.+..+|++.++-+ +-+..++......=...
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~L 484 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSL 484 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHh
Confidence 23333456777888888888777767777778777877788888888888888888754 33555666666666667
Q ss_pred CChHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHH
Q 046631 527 GNIELGKQLHGFSIRY-LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--KNSVTYTTMI 586 (813)
Q Consensus 527 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li 586 (813)
|+.+.|..+|...+.. .+......+.+.|+.=...|.++.|..+++++.+ +.+.+|-++.
T Consensus 485 gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 485 GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 7777777777776665 3344445566666666667777777777766663 2333454443
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=2.4e-11 Score=127.75 Aligned_cols=289 Identities=10% Similarity=-0.025 Sum_probs=204.0
Q ss_pred HCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHH
Q 046631 388 QNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQ 466 (813)
Q Consensus 388 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 466 (813)
-.|++++|.+.+....+..-.| ...|.....+....|+++.+...+..+.+...+.. .........+...|+++.|..
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 3699999998887765542111 22333334445678888888888888877665554 333344677888888888888
Q ss_pred HHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCC
Q 046631 467 IFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLD 545 (813)
Q Consensus 467 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 545 (813)
.++++....| +......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------- 228 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------- 228 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-------------------------
Confidence 8888776666 5667777788888888888888888888876543221 111000
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046631 546 QNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLS 622 (813)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 622 (813)
...|..++.......+.+...++++.+. ..++.....+...+...|+.++|.+++++..+ ..|+.... ++.
T Consensus 229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~ 302 (398)
T PRK10747 229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLI 302 (398)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHH
Confidence 0122233333334445566666666665 34778888889999999999999999999887 35555322 233
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 700 (813)
+....++.+++.+..+...+. .|+ ...+.+++..+.+.|++++|.+.|+++ ...|+.. .+..+...+.+.|+.+
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPE 378 (398)
T ss_pred hhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHH
Confidence 444568999999999988865 575 777889999999999999999999987 4456666 7778899999999999
Q ss_pred HHHHHHHHHhcCC
Q 046631 701 LAEVVAKKLLEMD 713 (813)
Q Consensus 701 ~a~~~~~~~~~~~ 713 (813)
+|..++++.+.+-
T Consensus 379 ~A~~~~~~~l~~~ 391 (398)
T PRK10747 379 EAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987754
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=3e-12 Score=131.31 Aligned_cols=279 Identities=15% Similarity=0.095 Sum_probs=173.4
Q ss_pred ChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC----ChhhHHHHHHHHHhCCChHHHHHHH
Q 046631 426 NQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR----DQATWNAMIAGYTQNGLLEEAFVAF 501 (813)
Q Consensus 426 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~ 501 (813)
+..+|...|..+..+-.....+...+..+|...+++++|.++|+.+...+| +...|.+.+--+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 456666666663333333336666677777777777777777777665555 44556555432211 1122222
Q ss_pred -HHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCH
Q 046631 502 -RQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQ-NVFVGTSLIDMYSKSGVINYAANVFAKIPEKNS 579 (813)
Q Consensus 502 -~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (813)
+++.+. -+-.+.||..+-+.++-+++.+.|+..|+..++. +| ...+|+.+..-+....++|.|...|+.....|.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 222222 1334567777777777777777777777766654 23 456666666666677777777777777665544
Q ss_pred h---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHH
Q 046631 580 V---TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA-ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYC 654 (813)
Q Consensus 580 ~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 654 (813)
. +|.-|...|.++++++.|+-.|++..+ +.|.. +....+...+-+.|+.|+|+++++++. .++| |+..--
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~ 561 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKY 561 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHH
Confidence 4 344455667777777777777777776 44443 345555556667777777777777766 4455 344445
Q ss_pred HHHHHHhccCCHHHHHHHHHHhC-cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 655 CVADMLGRVGKVVEAYEFVKELG-EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 655 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
..+..+...+++++|+..+++++ ..|+...++..++..|.+.|+.+.|+.-|.-+.+++|..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 56666677777777777777763 345555567777777777777777777777777777764
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.9e-10 Score=112.10 Aligned_cols=329 Identities=11% Similarity=0.015 Sum_probs=173.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Q 046631 197 IVSWYVKTERYVEAVRQFRMMLRMGIRPS-TISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAE 275 (813)
Q Consensus 197 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 275 (813)
.-.-|.++|++++|++.+.+.++ ..|| +.-|...-.+|...|+++.+.+-....++..+. -+..+..-..++-.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~---Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD---YVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH---HHHHHHHHHHHHHh
Confidence 34457788999999999999888 5788 667777777788899999998888888887743 35566666777777
Q ss_pred cCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCc--------hHHHHHHHHHHH--hCCCCCChhhHHHHHHHhccc--
Q 046631 276 LGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHP--------VEAIELFVQVLE--LDEIVFDDVTFLSALSAVSQL-- 343 (813)
Q Consensus 276 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~m~--~~g~~p~~~t~~~ll~~~~~~-- 343 (813)
.|++++|+.=. |-.++..++....-. ..|....+..++ +..+.|+.....+.+..+...
T Consensus 196 lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 196 LGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 88888775321 222222222222111 122222222333 223455555444444433211
Q ss_pred ------Cc-chHHH-HHHHHHHHh----cccchhhh------hccCCCCC---------cchHHHHHHHHHHCCCcHHHH
Q 046631 344 ------QE-LDLGQ-QLHAYIIKN----FVALPVIV------LNAVIERD---------VVSWNTMISAFVQNGLDDEGL 396 (813)
Q Consensus 344 ------~~-~~~a~-~~~~~~~~~----~~~~~~~~------~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~ 396 (813)
++ -+... ..++.+.++ ........ ..+....+ ..+.......+.-.|+.-.|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 11 01000 011111110 00000000 00000011 111111111223456666666
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC
Q 046631 397 MLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR 476 (813)
Q Consensus 397 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 476 (813)
.-|+..+.....++.- |.-+-.+|....+.+.....|....+.++....+|-.-..++.-.+++++|..-|++....+|
T Consensus 347 ~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 347 EDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred hhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 6666666654333221 545555566666666666666666666666666666666666666666666666666655555
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 046631 477 -DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIR 541 (813)
Q Consensus 477 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 541 (813)
++..|-.+.-+.-+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.++..++
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 4455555555555566666666666666554 233334555555555555555555555555544
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=1.4e-10 Score=122.83 Aligned_cols=281 Identities=10% Similarity=0.009 Sum_probs=161.2
Q ss_pred cCCHHHHHHHHhhcCCCCCChh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhccCCChHHHHH
Q 046631 458 SGLIKTARQIFEKNDSGDRDQA-TWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVV--TIASVLPACNPMGNIELGKQ 534 (813)
Q Consensus 458 ~g~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~ 534 (813)
.|+++.|.+.+.+..+..|+.. .+-.....+.+.|+++.|.+.|.+..+.. |+.. ........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555544443333222 22222334444455555555555544321 2221 12222344444555555555
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CHhHHH----HHHHHHHhcCChHHHHHHHHHHHh
Q 046631 535 LHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK---NSVTYT----TMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
.++.+.+.. +-+..+...+...|...|++++|.+.+..+.+. +...+. ....++...+..+++.+.+.++.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555443 223345555566666666666666666555521 222221 111111222333333445555544
Q ss_pred CCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhH---HHHHHHHHhccCCHHHHHHHHHHh-CcCC
Q 046631 608 CGI---EPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEH---YCCVADMLGRVGKVVEAYEFVKEL-GEEG 680 (813)
Q Consensus 608 ~g~---~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 680 (813)
... +.+...+..+...+...|+.++|.+.+++..+. .||... ...........++.+.+.+.+++. ...|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 321 125667777777888888888888888888754 455331 122222223457778888888775 5566
Q ss_pred ChH--HHHHHHHHHHHHhCCHHHHHHHHH--HHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 681 NVL--EIWGSLLGSCRLHGHSELAEVVAK--KLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 681 ~~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+.+ ....++++.|.+.|++++|.+.++ .+++..|++ ..+..++.++.+.|+.++|.+++++...
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~---~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA---NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666 688899999999999999999999 577788875 4466899999999999999999988653
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.1e-09 Score=110.30 Aligned_cols=263 Identities=11% Similarity=0.031 Sum_probs=193.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
++........-+-..+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+.+. .+..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44444444555555566666666666655532 333333333344444444444433333333332 2335567778888
Q ss_pred HHHhcCCHHHHHHHHhhCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046631 557 MYSKSGVINYAANVFAKIPEK---NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEG 633 (813)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a 633 (813)
.|.-.|+..+|.+.|.+...- =...|-.+...|+-.|..++|+..+...-+. ++-...-+..+..-|.+.++++-|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 888889999999999877632 3568999999999999999999999887763 122222334445568889999999
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhC--------cCC-ChHHHHHHHHHHHHHhCCHHHHH
Q 046631 634 LQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELG--------EEG-NVLEIWGSLLGSCRLHGHSELAE 703 (813)
Q Consensus 634 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~~l~~~~~~~g~~~~a~ 703 (813)
.++|.+.. ++.| |+..++-++-+....+.+.+|..+|+... +.+ -.+ +|+.|+.+|++.+.+++|+
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p-~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP-TLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH-HHHhHHHHHHHHhhHHHHH
Confidence 99999887 8889 58888899999999999999999988752 111 223 7899999999999999999
Q ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 704 VVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 704 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..+++++.+.|++ +.+|..+|.+|...|+.+.|.+.|.+....
T Consensus 476 ~~~q~aL~l~~k~--~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 476 DYYQKALLLSPKD--ASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHHcCCCc--hhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 9999999999999 999999999999999999999999998743
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=3.9e-10 Score=119.41 Aligned_cols=289 Identities=11% Similarity=0.001 Sum_probs=196.2
Q ss_pred HHCCCcHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHH
Q 046631 387 VQNGLDDEGLMLVYEMQKQGFMIDSV-TVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTA 464 (813)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 464 (813)
...|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+...+....+..+... .+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4678999999999887665 35433 333444566677888888888888776665554 4555567777778888888
Q ss_pred HHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcC
Q 046631 465 RQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYL 543 (813)
Q Consensus 465 ~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 543 (813)
...++.+.+..| +...+..+...|.+.|++++|.+.+..+.+.++. +...+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~---------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH----------------------
Confidence 888887776666 5556777778888888888888888888776533 2222111000
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HH
Q 046631 544 LDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAIT--FV 618 (813)
Q Consensus 544 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~ 618 (813)
..+..++..-......+...+.++...+ .+...+..++..+...|+.++|.+++++..+. .||... +.
T Consensus 230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~ 302 (409)
T TIGR00540 230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP 302 (409)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence 0111111111122223444445555542 47788888889999999999999999999884 444442 11
Q ss_pred HH-HHHHhccCcHHHHHHHHHHHHHhcCCCCC-h--hHHHHHHHHHhccCCHHHHHHHHHH--h-CcCCChHHHHHHHHH
Q 046631 619 AV-LSACSYAGLVDEGLQIFDLMQQEYKIQPS-T--EHYCCVADMLGRVGKVVEAYEFVKE--L-GEEGNVLEIWGSLLG 691 (813)
Q Consensus 619 ~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~~~~~~~~~~l~~ 691 (813)
.+ .......++.+.+.+.++...+. .|+ + ....+++..+.+.|++++|.+.|+. . ...|+.. .+..+..
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ 378 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAAD 378 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHH
Confidence 11 12234457788888888888755 564 4 6677899999999999999999993 3 4567666 5778999
Q ss_pred HHHHhCCHHHHHHHHHHHhc
Q 046631 692 SCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 692 ~~~~~g~~~~a~~~~~~~~~ 711 (813)
.+.+.|+.++|.+++++.+.
T Consensus 379 ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 379 AFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988754
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6.4e-10 Score=109.04 Aligned_cols=255 Identities=12% Similarity=0.107 Sum_probs=204.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcC
Q 046631 485 IAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLL--DQNVFVGTSLIDMYSKSG 562 (813)
Q Consensus 485 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g 562 (813)
..+|-.....++++.-.+.....|+.-+...-+....+.....++++|+.+|+++.+... --|..+|+.++-.-..+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 345555567788888888888887655555555555556677899999999999998732 126677777664433322
Q ss_pred CHHH-HHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHH
Q 046631 563 VINY-AANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLM 640 (813)
Q Consensus 563 ~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~ 640 (813)
.+.- |..++ .+.+-.+.|..++.+-|.-.++.++|+..|++.++ +.|... .|+.+..-|....+...|++-++.+
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 3222 22222 23333566777788889999999999999999999 556554 6766777899999999999999999
Q ss_pred HHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Q 046631 641 QQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM 718 (813)
Q Consensus 641 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 718 (813)
+ .+.| |-+.|-.|+.+|.-.+...=|+-+|++. ...|+...+|.+|+.+|.+.++.++|+..|++++..+..+
T Consensus 391 v---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-- 465 (559)
T KOG1155|consen 391 V---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-- 465 (559)
T ss_pred H---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc--
Confidence 8 6788 7999999999999999999999999987 6778887799999999999999999999999999988777
Q ss_pred chhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 719 PGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 719 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
...+.-|+++|.+.++.++|...+++-.+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88999999999999999999999998875
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=5e-13 Score=134.25 Aligned_cols=253 Identities=16% Similarity=0.158 Sum_probs=107.1
Q ss_pred HHHHHHhcCCHHHHHHHHhh-cCCC-CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 046631 451 LIDMYAKSGLIKTARQIFEK-NDSG-DR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMG 527 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~-~~~~-~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 527 (813)
+..++.+.|++++|.+++++ .... .| |...|..+.......++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 46667777888888888854 3333 23 4455666666666778888888888888765422 34445555555 5777
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCHhHHHHHHHHHHhcCChHHHHHHH
Q 046631 528 NIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP-----EKNSVTYTTMILGYGQHGMSERALSLF 602 (813)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~ 602 (813)
++++|..+.....+.. ++...+..++..+.+.|+++++.++++.+. +.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888887776655443 455567778888888999999988888754 346778888899999999999999999
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCC
Q 046631 603 RSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEG 680 (813)
Q Consensus 603 ~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 680 (813)
++.++ ..|+ ......++..+...|+.+++.+++....+. . ..|...+..++.+|...|+.++|+.++++. ...|
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-A-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-C-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99998 5665 557778888899999999999988888765 2 345777888999999999999999999987 4477
Q ss_pred ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 681 NVLEIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 681 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
+.+.+...+..++...|+.++|..+.++++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 7776888899999999999999999888765
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.42 E-value=2e-08 Score=102.64 Aligned_cols=282 Identities=12% Similarity=0.139 Sum_probs=147.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhcCCCC-CCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046631 446 GMESYLIDMYAKSGLIKTARQIFEKNDSGD-RDQ----ATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVL 520 (813)
Q Consensus 446 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll 520 (813)
.++..+.+.|-..|+++.|..+|++..... +.+ .+|-.....=.++.+++.|+.+.+.... .|.... +
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~ 460 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L 460 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h
Confidence 345667888888888888888888766332 221 2455555556677788888887766553 333211 1
Q ss_pred HHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CHhHHHHHHHHHHhcCChHH
Q 046631 521 PACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK---NSVTYTTMILGYGQHGMSER 597 (813)
Q Consensus 521 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 597 (813)
.+.+.+..-++. +| .+..+|.-.++.--..|-++....+++++.+- .+..--....-+-.+.-+++
T Consensus 461 -~~yd~~~pvQ~r-lh---------rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 461 -EYYDNSEPVQAR-LH---------RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEE 529 (835)
T ss_pred -hhhcCCCcHHHH-HH---------HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHH
Confidence 111122111111 11 13334555555555666666666666666532 12111122222334555667
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHhc---cCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCCHHHHHH
Q 046631 598 ALSLFRSMKGCGIEPDAI-TFVAVLSACSY---AGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVADMLGRVGKVVEAYE 671 (813)
Q Consensus 598 A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 671 (813)
+.++|++-+..-..|+.. .|+..+.-+.+ ..+++.|..+|++..+ |..|. -..|......=.+-|....|+.
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 777776666553334433 45554443332 2356777777777765 55554 2222222233335566677777
Q ss_pred HHHHhCcCC---ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 672 FVKELGEEG---NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 672 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+++++...- +..+.|+..+.--...=-...-..+|+++++.-|+........-.+++=.+.|..+.|..++.--.+
T Consensus 608 iyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 608 IYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 777653222 2223555544333322223344566677777666653233333445666667777777777655544
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=1.3e-09 Score=105.42 Aligned_cols=297 Identities=15% Similarity=0.108 Sum_probs=239.4
Q ss_pred HHHHHHHHc--CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 046631 195 NTIVSWYVK--TERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFM 272 (813)
Q Consensus 195 ~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 272 (813)
..+..+..+ .|++.+|.++..+-.+.+-.| ...|.....+....|+.+.+-+++.++.+.... ++..+.-.....
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~--~~l~v~ltrarl 162 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD--DTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC--chHHHHHHHHHH
Confidence 344555443 799999999999987776433 346677777888999999999999999998655 788888899999
Q ss_pred HHhcCChHHHHHHHhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChh-------hHHHHHHHhcc
Q 046631 273 YAELGCFDFARKIFDNCL---ERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDV-------TFLSALSAVSQ 342 (813)
Q Consensus 273 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~-------t~~~ll~~~~~ 342 (813)
....|+.+.|..-.++.. .++........+.|.+.|++.....++ ..|.+.|+--++. ++..++.-+..
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l-~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAIL-PKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHH-HHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 999999999998877654 457888999999999999999999999 8888888765543 67888888877
Q ss_pred cCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 046631 343 LQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAAS 422 (813)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 422 (813)
.+..+.-+..++...+. .+.+...-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+-.+.
T Consensus 242 ~~~~~gL~~~W~~~pr~------------lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l 305 (400)
T COG3071 242 DNGSEGLKTWWKNQPRK------------LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRL 305 (400)
T ss_pred cccchHHHHHHHhccHH------------hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhc
Confidence 77777777777766553 233456667788889999999999999999999887776 22334566
Q ss_pred cCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 046631 423 NLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFR 502 (813)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 502 (813)
+.++.+.-.+..+...+.-+....+..+|...|.+.+.+.+|...|+...+..|+..+|+.+..+|.+.|+..+|.++++
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 77888888888888877776666888899999999999999999999877778899999999999999999999999988
Q ss_pred HHHHCCCCC
Q 046631 503 QMLEHNVTP 511 (813)
Q Consensus 503 ~m~~~~~~p 511 (813)
+....-..|
T Consensus 386 e~L~~~~~~ 394 (400)
T COG3071 386 EALLLTRQP 394 (400)
T ss_pred HHHHHhcCC
Confidence 876543333
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.36 E-value=3.1e-08 Score=103.86 Aligned_cols=440 Identities=14% Similarity=0.074 Sum_probs=259.3
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 046631 261 NDLFVASSAIFMYAELGCFDFARKIFDNCLER---NTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSAL 337 (813)
Q Consensus 261 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll 337 (813)
.|..+|..|.-+..++|+++.+.+.|++...- ....|+.+-..|...|.-..|+.+++..+....-++|...+...-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 68888888889999999999999999887543 556799999999999999999999865555544344444444444
Q ss_pred HHhc-ccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHH
Q 046631 338 SAVS-QLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTA 416 (813)
Q Consensus 338 ~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 416 (813)
..|. +.+..+++..+-..+++..... ........|-.+.-+|...-. .++..+-.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~-------~~~l~~~~~l~lGi~y~~~A~----------------~a~~~seR- 456 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQ-------RSHLKPRGYLFLGIAYGFQAR----------------QANLKSER- 456 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhh-------hhhhhhhHHHHHHHHHHhHhh----------------cCCChHHH-
Confidence 4443 3345555555444444310000 000111222222222211000 00000000
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCC--CChhhHHHHHHHHHhCCCh
Q 046631 417 LLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGD--RDQATWNAMIAGYTQNGLL 494 (813)
Q Consensus 417 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~ 494 (813)
.....++.+.++..++.++....+.-.+.--|+..++++.|.+..++..... -+...|.-|.-.+...+++
T Consensus 457 -------~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 457 -------DALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred -------HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhh
Confidence 0012234455555555555555444445556777788888888877654432 3677888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 046631 495 EEAFVAFRQMLEHNVTPN-VVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAK 573 (813)
Q Consensus 495 ~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (813)
.+|+.+.+..... .|+ ..-...-+..-...++.+++......+... |... ......|+-....++...
T Consensus 530 ~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~ 598 (799)
T KOG4162|consen 530 KEALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAG 598 (799)
T ss_pred HHHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcc
Confidence 8888888776653 122 111111111112234555554443333221 0000 000011222223333333
Q ss_pred CC----C-CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CC------HHHHHHHHHHHhccCcHHHHHHHHHH
Q 046631 574 IP----E-KN-SVTYTTMILGYGQHGMSERALSLFRSMKGCGIE--PD------AITFVAVLSACSYAGLVDEGLQIFDL 639 (813)
Q Consensus 574 ~~----~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~------~~~~~~ll~a~~~~g~~~~a~~~~~~ 639 (813)
+. + .+ +.++..+..-....+ +.+..-.. |...-+. |+ ...|......+...+..++|...+.+
T Consensus 599 l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 599 LHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred cccCcccccccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 32 1 12 222322222211111 11100000 2211122 22 12455566678888999999887777
Q ss_pred HHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHH--HHHHHhcCCCC
Q 046631 640 MQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEV--VAKKLLEMDTR 715 (813)
Q Consensus 640 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~ 715 (813)
.. ++.|- ...|...+..+...|.+++|.+.|... ..+|+.+.+..++...+.+.|+-..|.. ++..+++++|.
T Consensus 676 a~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 676 AS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred HH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 76 56674 888888899999999999999887765 6777776699999999999998888877 99999999999
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 716 NSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 716 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
+ +.++..+|.++.+.|+.++|.+-|....+...
T Consensus 753 n--~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 753 N--HEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred C--HHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 9 99999999999999999999999999887653
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.36 E-value=5.8e-09 Score=101.09 Aligned_cols=288 Identities=10% Similarity=0.015 Sum_probs=172.0
Q ss_pred HCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHH
Q 046631 388 QNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQ 466 (813)
Q Consensus 388 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 466 (813)
-.|++.+|.++..+-.+.+-.| ...|..-.++.-..|+.+.+-..+.++-+...+++ .+.-+........|++..|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3689999999999987776444 34455566777788889999888888888866666 777778888888888888888
Q ss_pred HHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCC
Q 046631 467 IFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLD 545 (813)
Q Consensus 467 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 545 (813)
-.+++.+..| +.........+|.+.|++..+..++.+|.+.|+--|...- ++
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l---------- 227 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL---------- 227 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH----------
Confidence 8887665555 6677788888888888888888888888887755443210 00
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046631 546 QNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLS 622 (813)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 622 (813)
...+|+.+++-....+..+.-...++... +.++..-.+++.-+.+.|+.++|.++..+..+++..|+ ...+ -
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~ 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-I 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-H
Confidence 11123333333333333333334444443 23455555556666666666666666666666555554 1111 1
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELA 702 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 702 (813)
.+.+.++...-++..+...+. .|+.+..+.+|+..|.+++.+.+|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~-----------------------------------h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQ-----------------------------------HPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHh-----------------------------------CCCChhHHHHHHHHHHHhhHHHHH
Confidence 334445544444444444433 233333444555555555555555
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 703 EVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 703 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
...++.++...|+ ...+..+++++.+.|+.++|...+++..
T Consensus 348 ~~~leaAl~~~~s---~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 348 SEALEAALKLRPS---ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHhcCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5555555555444 3444455555555555555555544443
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=2.3e-10 Score=112.32 Aligned_cols=197 Identities=15% Similarity=0.121 Sum_probs=166.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSA 623 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 623 (813)
....+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677888899999999999999997763 357788889999999999999999999999853 3345677788888
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHH
Q 046631 624 CSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSEL 701 (813)
Q Consensus 624 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 701 (813)
+...|++++|.+.++++.+. ...| ....+..++.++...|++++|...+++. ...|+....|..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIED-PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999864 2223 3667888999999999999999999887 3455555688899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
|...++++++..|.+ +..+..++.++...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQT--AESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999987776 78888889999999999999999888764
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.6e-08 Score=95.52 Aligned_cols=264 Identities=12% Similarity=-0.016 Sum_probs=193.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 046631 446 GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQA-TWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACN 524 (813)
Q Consensus 446 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 524 (813)
.+...+.+.+...|+.++|+..|++....+|+.+ ......-.+.+.|+.++...+...+.... +-+..-|-.-.....
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLY 311 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhh
Confidence 4556788888999999999999998776677443 33333444567788888887777766532 112222222233344
Q ss_pred cCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--C-CCHhHHHHHHHHHHhcCChHHHHHH
Q 046631 525 PMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--E-KNSVTYTTMILGYGQHGMSERALSL 601 (813)
Q Consensus 525 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~ 601 (813)
...+.+.|..+-+..++..- .+...|-.-..++...|++++|.-.|+... . -+..+|.-|+..|...|++.+|.-+
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred hhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 56677788877777766532 123333334456778899999999998765 4 3789999999999999999999988
Q ss_pred HHHHHhCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-C
Q 046631 602 FRSMKGCGIEPDAITFVAVL-SACS-YAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-G 677 (813)
Q Consensus 602 ~~~m~~~g~~p~~~~~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 677 (813)
-+..... +..+..+.+.+. ..|. ....-++|.+++++.. .+.|+ ....+.+...+.+.|..++++.++++. .
T Consensus 391 An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 391 ANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 8877663 344555555542 2332 3334588999998877 66898 888889999999999999999999886 4
Q ss_pred cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 678 EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 678 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
..++.. ..+.|+..+...+.+++|...|..++.++|++
T Consensus 467 ~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 467 IFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred hccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 556666 88999999999999999999999999999998
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=4.1e-09 Score=98.75 Aligned_cols=299 Identities=16% Similarity=0.121 Sum_probs=167.7
Q ss_pred HHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-c---chHHHHHHHHHhcCCHH
Q 046631 387 VQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHF-E---GMESYLIDMYAKSGLIK 462 (813)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~ 462 (813)
.-+.+.++|.++|-+|.+.. +-+..+..+|.+.+.+.|..+.|+.+|..+.+..-.. . .+...|..-|...|-+|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34678999999999998742 2223345567777888888888888888877653322 2 33456777788888888
Q ss_pred HHHHHHhhcCCC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 046631 463 TARQIFEKNDSG-DRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIR 541 (813)
Q Consensus 463 ~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 541 (813)
.|+.+|..+... .--......|+..|-+..+|++|+++-+++.+.+-.+..+- |
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e----I--------------------- 179 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE----I--------------------- 179 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH----H---------------------
Confidence 888888877631 12344666777788888888888888777776553333221 1
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046631 542 YLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK---NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFV 618 (813)
Q Consensus 542 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 618 (813)
...|.-|...+....+++.|..++.+..+. .+..--.+...+...|+++.|++.++...+.+..--..+..
T Consensus 180 ------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 180 ------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred ------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 012333444444445555555555554421 22333334445555566666666666555543322233445
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCC
Q 046631 619 AVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGH 698 (813)
Q Consensus 619 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 698 (813)
.|..+|.+.|+.+++..++.++.+. .+....-..+.+.- ....-
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~li---------------------------------e~~~G 297 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLI---------------------------------ELQEG 297 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHH---------------------------------HHhhC
Confidence 5555555555555555555555433 23332222333322 22222
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH--hcCCcHHHHHHHHHHHHCCCccCCc
Q 046631 699 SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA--EEGNWENVDKVRKEMRERGLRKEVG 755 (813)
Q Consensus 699 ~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~ 755 (813)
.+.|...+.+-+...|.- ...|.++..-+. ..|++.+...+++.|....++..|.
T Consensus 298 ~~~Aq~~l~~Ql~r~Pt~--~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 298 IDAAQAYLTRQLRRKPTM--RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred hHHHHHHHHHHHhhCCcH--HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 334444444444444443 333333322222 3356777777888887766665553
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.30 E-value=1.6e-06 Score=89.27 Aligned_cols=518 Identities=13% Similarity=0.147 Sum_probs=265.8
Q ss_pred cchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHH
Q 046631 70 TVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLL 149 (813)
Q Consensus 70 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (813)
++.|-..+..+..+|+.......|...+..-| +.-....|...+.-....+-.+.+..++++.++. ++...+--|
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLp-vtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALP-VTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCc-hHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 55677777778888888888888888776643 3335566777788777777777888888777654 333456667
Q ss_pred HHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCC----------CcccHHHHHHHHHcCCChhHHH---HHHHH
Q 046631 150 NMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRR----------NVVAWNTIVSWYVKTERYVEAV---RQFRM 216 (813)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~---~l~~~ 216 (813)
..+++. +++++|.+.+..+... +-..|..+-...+++-+.-.-+ .+++.
T Consensus 177 e~L~~~------------------d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~ 238 (835)
T KOG2047|consen 177 EYLAKS------------------DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRG 238 (835)
T ss_pred HHHHhc------------------cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHh
Confidence 777777 5565555555554321 1122333333333222211111 11111
Q ss_pred HHHCCCCCCHh--hHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhc------------------
Q 046631 217 MLRMGIRPSTI--SFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAEL------------------ 276 (813)
Q Consensus 217 m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~------------------ 276 (813)
+.. .-+|.. .|.+|.+-|.+.|.++.|..+|++....-. ++.-++.+.+.|+.-
T Consensus 239 gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~----tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n 312 (835)
T KOG2047|consen 239 GIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM----TVRDFTQIFDAYAQFEESCVAAKMELADEESGN 312 (835)
T ss_pred hcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe----ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 111 122222 344444444444444444444444443321 111122222222110
Q ss_pred ----CChHHHHHHHhhcCC---------------CCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCC---C-hhhH
Q 046631 277 ----GCFDFARKIFDNCLE---------------RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVF---D-DVTF 333 (813)
Q Consensus 277 ----g~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p---~-~~t~ 333 (813)
-+++....-|+.+.. .++..|..-+. +..|+..+-...|.+..+.-..+- . ...+
T Consensus 313 ~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw 390 (835)
T KOG2047|consen 313 EEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLW 390 (835)
T ss_pred hhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHH
Confidence 112223333333322 13444544333 345777788888855554322111 1 1235
Q ss_pred HHHHHHhcccCcchHHHHHHHHHHH-hcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCC----
Q 046631 334 LSALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFM---- 408 (813)
Q Consensus 334 ~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---- 408 (813)
..+-+.|-..|+++.|+.+|+...+ .+... ..=..+|-.....=.+..+++.|+++++....---.
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v---------~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKTV---------EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccch---------HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 6677777888999999999998887 33221 011234555555556677788888877766532111
Q ss_pred -------CCHh------HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 046631 409 -------IDSV------TVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGD 475 (813)
Q Consensus 409 -------pd~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 475 (813)
+-.. .|...+..--..|-++..+.+|+.+++..+....+.......+-...-++++.+++++-...-
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 1111 122222222233455555666666666555544333223333344444555555555432221
Q ss_pred --CChh-hHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchh
Q 046631 476 --RDQA-TWNAMIAGYTQN---GLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVF 549 (813)
Q Consensus 476 --~~~~-~~~~li~~~~~~---~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 549 (813)
|++. .||..+.-+.+. .+++.|..+|++.++ |++|...-+..++
T Consensus 542 k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLl----------------------------- 591 (835)
T KOG2047|consen 542 KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLL----------------------------- 591 (835)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH-----------------------------
Confidence 2222 455544444331 234555555555555 3444332221111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH---
Q 046631 550 VGTSLIDMYSKSGVINYAANVFAKIPEK-----NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVL--- 621 (813)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll--- 621 (813)
....=-+-|....|+.++++.... -...||..|.--...=-+.....+|++.++ .-|+...-...+
T Consensus 592 ----YA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFA 665 (835)
T KOG2047|consen 592 ----YAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFA 665 (835)
T ss_pred ----HHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHH
Confidence 111112346666777777766531 245677777665555555666777777777 466665433333
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCC
Q 046631 622 SACSYAGLVDEGLQIFDLMQQEYKIQP--STEHYCCVADMLGRVGK 665 (813)
Q Consensus 622 ~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 665 (813)
..-++.|.++.|..++..-.+ =..| +...|...=+-=.+.|+
T Consensus 666 dlEtklGEidRARaIya~~sq--~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 666 DLETKLGEIDRARAIYAHGSQ--ICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHhhhhhhHHHHHHHHHhhhh--cCCCcCChHHHHHHHHHHHhcCC
Confidence 344677888888888765543 2344 35566666666667777
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=7.4e-10 Score=115.47 Aligned_cols=245 Identities=18% Similarity=0.192 Sum_probs=163.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhcCCC--------CCChh-hHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCH
Q 046631 446 GMESYLIDMYAKSGLIKTARQIFEKNDSG--------DRDQA-TWNAMIAGYTQNGLLEEAFVAFRQMLEH---NVTPNV 513 (813)
Q Consensus 446 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~ 513 (813)
.+...+..+|...|+++.|..+|+..... .|.+. ..+.+...|...+++++|..+|+++..- ..-++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44455777777777777777777653211 23332 2334566777777777777777776542 001111
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcC
Q 046631 514 VTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHG 593 (813)
Q Consensus 514 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 593 (813)
.. -..+++.|..+|.+.|++++|...+
T Consensus 280 ~~-------------------------------va~~l~nLa~ly~~~GKf~EA~~~~---------------------- 306 (508)
T KOG1840|consen 280 PA-------------------------------VAATLNNLAVLYYKQGKFAEAEEYC---------------------- 306 (508)
T ss_pred HH-------------------------------HHHHHHHHHHHHhccCChHHHHHHH----------------------
Confidence 11 1234566677788888888887775
Q ss_pred ChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHhcC--CCCC----hhHHHHHHHHHhccCC
Q 046631 594 MSERALSLFRSMKGCGIEPDAI--TFVAVLSACSYAGLVDEGLQIFDLMQQEYK--IQPS----TEHYCCVADMLGRVGK 665 (813)
Q Consensus 594 ~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~ 665 (813)
+.|++++++ ..|..+..+ -++.+...|+..+.+++|..++....+.+. ..++ ..+++.|+.+|...|+
T Consensus 307 --e~Al~I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk 382 (508)
T KOG1840|consen 307 --ERALEIYEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK 382 (508)
T ss_pred --HHHHHHHHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc
Confidence 456666666 222222222 466677778888888888888887765543 2222 6788999999999999
Q ss_pred HHHHHHHHHHhC---------cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC----CCCC-CCchhHHHHHHHHHh
Q 046631 666 VVEAYEFVKELG---------EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM----DTRN-SMPGYHVLLSNIYAE 731 (813)
Q Consensus 666 ~~~A~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~-~~~~~~~~l~~~~~~ 731 (813)
+++|.++++++. ........++.|...|.+.++.+.|.++|.+...+ +|+. +....|.-|+.+|..
T Consensus 383 ~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~ 462 (508)
T KOG1840|consen 383 YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRA 462 (508)
T ss_pred hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 999999998861 12232336788899999889999888888876643 4443 224567778999999
Q ss_pred cCCcHHHHHHHHHHHH
Q 046631 732 EGNWENVDKVRKEMRE 747 (813)
Q Consensus 732 ~g~~~~A~~~~~~m~~ 747 (813)
.|++++|.++.+....
T Consensus 463 ~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 463 QGNYEAAEELEEKVLN 478 (508)
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999999888763
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.6e-08 Score=100.70 Aligned_cols=285 Identities=12% Similarity=0.039 Sum_probs=170.5
Q ss_pred CCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHH
Q 046631 374 RDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLID 453 (813)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 453 (813)
.+........+-+...+++.+..++++...+.. ++....+..=|.++...|+...-..+-..+++.-+.....+-++.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 344555556667778889999999999888763 4455555555667777788777777777777777766666667777
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC--C-CCCCHHHHHHHHHHhccCCCh
Q 046631 454 MYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEH--N-VTPNVVTIASVLPACNPMGNI 529 (813)
Q Consensus 454 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~-~~p~~~t~~~ll~~~~~~~~~ 529 (813)
.|.-.|+..+|.+.|.+....+| -...|-.+...|+-.|..++|+..|...-+. | ..|. ..+---|.+.++.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~----LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS----LYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH----HHHHHHHHHhccH
Confidence 77777888888888887665555 4557888888888888888888887766552 1 1221 1122334445555
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 046631 530 ELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCG 609 (813)
Q Consensus 530 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 609 (813)
+.|.++|.+..... +.|+.+.+-+.-.....+.+.+|...|+....+ .+.....
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------ik~~~~e- 450 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------IKSVLNE- 450 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------hhhcccc-
Confidence 55555555544321 224444444444444445555555554433200 0000000
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHH
Q 046631 610 IEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWG 687 (813)
Q Consensus 610 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~ 687 (813)
..--..+++.|..+|.+.+.+++|+..+++... ..| +..++..++.+|...|+++.|++.|.+. ...|+.. +-.
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~---l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~-~~~ 526 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI-FIS 526 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH-HHH
Confidence 001233566666666666666666666666653 234 4666666666666667777666666654 4445444 333
Q ss_pred HHHHHH
Q 046631 688 SLLGSC 693 (813)
Q Consensus 688 ~l~~~~ 693 (813)
.++..+
T Consensus 527 ~lL~~a 532 (611)
T KOG1173|consen 527 ELLKLA 532 (611)
T ss_pred HHHHHH
Confidence 444333
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.4e-11 Score=85.79 Aligned_cols=50 Identities=30% Similarity=0.601 Sum_probs=48.2
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhC
Q 046631 189 RNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSS 238 (813)
Q Consensus 189 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 238 (813)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=1.9e-11 Score=85.03 Aligned_cols=50 Identities=38% Similarity=0.549 Sum_probs=48.4
Q ss_pred CCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 046631 374 RDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASN 423 (813)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 423 (813)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.22 E-value=6.9e-07 Score=92.13 Aligned_cols=441 Identities=15% Similarity=0.084 Sum_probs=264.6
Q ss_pred CCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHH
Q 046631 239 LGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLER---NTEVWNTMIGGYVQNNHPVEAIE 315 (813)
Q Consensus 239 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 315 (813)
.+++..+++..+.+++..++ ...+.....-.+...|+-++|.......... +.+.|..+.-.+-...++++|+.
T Consensus 20 ~kQYkkgLK~~~~iL~k~~e---HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPE---HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCc---cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 34555566666666554332 2222222222344456666776666655443 45667777777777777888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHH
Q 046631 316 LFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEG 395 (813)
Q Consensus 316 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 395 (813)
.|...+... +-|...+..+--.-++.|+++........+.+. .+.....|..+..++.-.|+...|
T Consensus 97 cy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql------------~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 97 CYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL------------RPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh------------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 875555432 223334444444445566666665555555441 123456788888899999999999
Q ss_pred HHHHHHHHHCC-CCCCHhHHHHHHH------HHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 046631 396 LMLVYEMQKQG-FMIDSVTVTALLS------AASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIF 468 (813)
Q Consensus 396 ~~~~~~m~~~g-~~pd~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 468 (813)
..++++..+.- -.|+...|..... .....|.++.+.+.+......-.+.-...-.-.+.+.+.+++++|..++
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 99999988764 2466665543322 2445677777766655544333322244456778889999999999999
Q ss_pred hhcCCCCCChhhHHHHH-HHHHhCCChHHHH-HHHHHHHHC---CCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcC
Q 046631 469 EKNDSGDRDQATWNAMI-AGYTQNGLLEEAF-VAFRQMLEH---NVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYL 543 (813)
Q Consensus 469 ~~~~~~~~~~~~~~~li-~~~~~~~~~~~A~-~~~~~m~~~---~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 543 (813)
..+....||...|.... .++.+-.+.-+++ .+|....+. ...|-... ++......-.+....++....+.|
T Consensus 243 ~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp----lsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP----LSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc----HHHhCcchhHHHHHHHHHHHhhcC
Confidence 99887788777666554 4443333334444 556555442 11121111 111112223344455666666777
Q ss_pred CCCchhHHHHHHHHHHhcCCHH---H-HHHHHhhCC--------------CCCHhHHHH--HHHHHHhcCChHHHHHHHH
Q 046631 544 LDQNVFVGTSLIDMYSKSGVIN---Y-AANVFAKIP--------------EKNSVTYTT--MILGYGQHGMSERALSLFR 603 (813)
Q Consensus 544 ~~~~~~~~~~li~~~~~~g~~~---~-A~~~~~~~~--------------~~~~~~~~~--li~~~~~~g~~~~A~~~~~ 603 (813)
+++ ++..+...|-.....+ + +..+...+. .|....|.. ++..|-..|+++.|+.+++
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 654 2333333332211111 1 111111111 234455544 5677888999999999999
Q ss_pred HHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCCh
Q 046631 604 SMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNV 682 (813)
Q Consensus 604 ~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 682 (813)
..+. -.|+.+ .|..=.+.+.+.|++++|..++++..+. . .||...-.--+.-..++.+.++|.++......++..
T Consensus 396 ~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el-D-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~ 471 (700)
T KOG1156|consen 396 LAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL-D-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFG 471 (700)
T ss_pred HHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-c-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccc
Confidence 9998 467665 5556667899999999999999998743 1 245554446777788999999999998887555521
Q ss_pred -H----H---HHHHH--HHHHHHhCCHHHHHHHHH
Q 046631 683 -L----E---IWGSL--LGSCRLHGHSELAEVVAK 707 (813)
Q Consensus 683 -~----~---~~~~l--~~~~~~~g~~~~a~~~~~ 707 (813)
. + +|..+ +.+|.++|++.+|++-+.
T Consensus 472 ~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 472 AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 1 1 56655 457778888877765443
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=2.3e-09 Score=118.13 Aligned_cols=211 Identities=14% Similarity=0.030 Sum_probs=148.6
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 046631 529 IELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--EK-NSVTYTTMILGYGQHGMSERALSLFRSM 605 (813)
Q Consensus 529 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 605 (813)
.++|...++...+.. +.+...+..+..++...|++++|...|++.. .| +...|..+...+...|++++|+..+++.
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444444443332 1244556667777888889999999998876 34 5678888899999999999999999999
Q ss_pred HhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCCh
Q 046631 606 KGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNV 682 (813)
Q Consensus 606 ~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 682 (813)
.+. .|+.. .+..++..+...|++++|...++++.+. ..|+ +..+..++.+|...|++++|...++++. ..|..
T Consensus 399 l~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 399 LKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred Hhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 984 55543 3334444566789999999999988754 1354 6667889999999999999999998873 44444
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 683 LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
...++.+...+...| +.|...++++++..-.. +.....+..+|.-.|+-+.+..+ +++.+.+
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 446777777777777 47777777766543332 22233466778888888777766 8887654
No 67
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1e-05 Score=87.52 Aligned_cols=197 Identities=13% Similarity=0.116 Sum_probs=130.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 046631 478 QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDM 557 (813)
Q Consensus 478 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 557 (813)
...|+.+..+-.+.|...+|++-|-+ .-|+..|.-++..+.+.|.+++-.+++...++..-+|.+ -+.||-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHH
Confidence 45788888898999999999887754 346778999999999999999999999999888777765 4678999
Q ss_pred HHhcCCHHHHHHHHhhCCC-----------------------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 046631 558 YSKSGVINYAANVFAKIPE-----------------------KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA 614 (813)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 614 (813)
|++.+++.+-++++..--. .++.-|..|...+...|+++.|...-++. .+.
T Consensus 1176 yAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred HHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence 9999999888776542110 13344555566666666666666555443 234
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCC--CChhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCChHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQ--PSTEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNVLEIWGSLLG 691 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~ 691 (813)
.||..+-.+|...+.+.-| +|. |+. ....-..-|+..|...|.+++-+.+++... .+.-....+.-|.-
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-----QiC---GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELai 1321 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-----QIC---GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAI 1321 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-----Hhc---CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 4677777777665544322 222 333 235556677777777888887777777641 11111114555555
Q ss_pred HHHHh
Q 046631 692 SCRLH 696 (813)
Q Consensus 692 ~~~~~ 696 (813)
.|.+-
T Consensus 1322 LYsky 1326 (1666)
T KOG0985|consen 1322 LYSKY 1326 (1666)
T ss_pred HHHhc
Confidence 55443
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=1.5e-09 Score=97.09 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=144.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA-ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVAD 658 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 658 (813)
+...|.-+|.+.|+...|..-+++.++ ..|+. .++..+...|.+.|..+.|.+.|+... .+.|+ -.+.|..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 456678889999999999999999998 45655 488888889999999999999999988 66885 888999999
Q ss_pred HHhccCCHHHHHHHHHHhCcCC---ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCc
Q 046631 659 MLGRVGKVVEAYEFVKELGEEG---NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNW 735 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~ 735 (813)
-+|..|++++|...|++....| ...++|..++.+..+.|+.+.|+..+++.++.+|+. +.....++....+.|++
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~--~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--PPALLELARLHYKAGDY 189 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC--ChHHHHHHHHHHhcccc
Confidence 9999999999999999986666 445589999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHCCC
Q 046631 736 ENVDKVRKEMRERGL 750 (813)
Q Consensus 736 ~~A~~~~~~m~~~~~ 750 (813)
-+|.-+++.....+.
T Consensus 190 ~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 190 APARLYLERYQQRGG 204 (250)
T ss_pred hHHHHHHHHHHhccc
Confidence 999999999887654
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=7.4e-10 Score=103.49 Aligned_cols=229 Identities=14% Similarity=0.122 Sum_probs=151.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCC
Q 046631 449 SYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGN 528 (813)
Q Consensus 449 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 528 (813)
+.+...|.+.|.+.+|.+.|+.-....|-+.+|-.|-.+|.+.+++..|+.+|.+-.+. .|-.+||.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l----------- 293 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL----------- 293 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh-----------
Confidence 45777788888888888888876655677777777788888888888888888776653 56655542
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046631 529 IELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGC 608 (813)
Q Consensus 529 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 608 (813)
.-....+-..+ +.++|.++|+...+.
T Consensus 294 -----------------------~g~ARi~eam~-------------------------------~~~~a~~lYk~vlk~ 319 (478)
T KOG1129|consen 294 -----------------------LGQARIHEAME-------------------------------QQEDALQLYKLVLKL 319 (478)
T ss_pred -----------------------hhhHHHHHHHH-------------------------------hHHHHHHHHHHHHhc
Confidence 11112222233 344444444444442
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh----CcCCChHH
Q 046631 609 GIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL----GEEGNVLE 684 (813)
Q Consensus 609 g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~ 684 (813)
. ..+......+...|...++.+-|+.+++++... |+. +...|+.++-+|.-.+++|-++.-|++. ...+...+
T Consensus 320 ~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaD 396 (478)
T KOG1129|consen 320 H-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAAD 396 (478)
T ss_pred C-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhh
Confidence 1 122223333444444555555555555555544 432 4455555555555555555555554443 23345567
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
+|..|.......||+..|.+.|+-++..++++ ...+..|+-+-.+.|+.++|..++....+..
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h--~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH--GEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcch--HHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999999999998 8999999999999999999999999888654
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=3.4e-08 Score=93.57 Aligned_cols=419 Identities=14% Similarity=0.075 Sum_probs=218.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHH-HHHHHHh
Q 046631 197 IVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASS-AIFMYAE 275 (813)
Q Consensus 197 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~ 275 (813)
+..++.+.|++++|+..++-+.+.. .|+......+.-+.--.|.+.+|.++-... |+....+. |...-.+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka--------~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA--------PKTPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHH
Confidence 3445667899999999988876643 445554444444444556677776665443 44444444 4444455
Q ss_pred cCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHH
Q 046631 276 LGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAY 355 (813)
Q Consensus 276 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 355 (813)
.|+-++-...-+.+.. ...---+|.+.....-.+.+|+++|++.+... |+-...+.-+..
T Consensus 134 lndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn---~ey~alNVy~AL---------------- 193 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN---PEYIALNVYMAL---------------- 193 (557)
T ss_pred hCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---hhhhhhHHHHHH----------------
Confidence 5665555444443322 22333344555555556788888885555432 233333322222
Q ss_pred HHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhcCCChHHHHHHH
Q 046631 356 IIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSV-TVTALLSAASNLRNQDVGKQTH 434 (813)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~ 434 (813)
+|.+..-++-+.+++.--.+. .||+. ..+.......+.-+-..+..-.
T Consensus 194 -----------------------------CyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 194 -----------------------------CYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred -----------------------------HHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHH
Confidence 234444444444444443332 22221 1111111111111111111111
Q ss_pred HHHHHhCCCCcchHHHHHHHHHhc-----CCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 046631 435 AYLLRHGIHFEGMESYLIDMYAKS-----GLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNV 509 (813)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 509 (813)
..+.+.+...- ..+.-.++. ..-+.|.+++-.+...-| ..--.|+--|.+.++..+|..+.+++.- .
T Consensus 243 k~ladN~~~~~----~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--t 314 (557)
T KOG3785|consen 243 KELADNIDQEY----PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP--EARLNLIIYYLNQNDVQEAISLCKDLDP--T 314 (557)
T ss_pred HHHHhcccccc----hhHHHHHHcCeEEEeCCccHHHhchHHHhhCh--HhhhhheeeecccccHHHHHHHHhhcCC--C
Confidence 11111111000 011111221 122344444443331111 2223345557777788877777665422 1
Q ss_pred CCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCHhHHHH
Q 046631 510 TPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE-----KNSVTYTT 584 (813)
Q Consensus 510 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 584 (813)
.|-......+..+ ++.+-......+.-|.+.|+-.-+ ..+.--.+
T Consensus 315 tP~EyilKgvv~a------------------------------alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 315 TPYEYILKGVVFA------------------------------ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred ChHHHHHHHHHHH------------------------------HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 2222222222211 111111111223334444443321 12223445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHH-HHHHHHHhcc
Q 046631 585 MILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHY-CCVADMLGRV 663 (813)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~ 663 (813)
+.+.+.-..++++.+-.++....- +..|...-..+..|.+..|++.+|.++|-++... .++ |..+| ..|..+|.+.
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhc
Confidence 555566666777777777777664 3444444456788999999999999999877633 333 34444 5677899999
Q ss_pred CCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 664 GKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 664 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
|+.+-|++++-++....+.......+..-|.+.+.+=-|-+.|..+-.++|.+
T Consensus 442 kkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 442 KKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred CCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 99999999998887666666566677888999999888888898888888885
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.20 E-value=2.9e-07 Score=96.79 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVA 657 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 657 (813)
..|......+...++.++|...+.+... +.|- ...|......+...|..++|.+.|.... -+.|+ +.....++
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHH
Confidence 3566667778888888899888888776 3443 3456666667788999999999998887 67897 89999999
Q ss_pred HHHhccCCHHHHHH--HHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 658 DMLGRVGKVVEAYE--FVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 658 ~~~~~~g~~~~A~~--~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.++.+.|+..-|.. ++..+ +.+|..++.|..|+..+.+.|+.+.|.+.|..++++++.+
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 99999998776666 66665 7888888899999999999999999999999999998776
No 72
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.19 E-value=2.5e-06 Score=88.75 Aligned_cols=441 Identities=18% Similarity=0.184 Sum_probs=219.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhc
Q 046631 197 IVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAEL 276 (813)
Q Consensus 197 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 276 (813)
.|..|....++++|+.+-+. .|.+.-...-.+.++++...|+-+.|-++- .. +- --.+.|..|.+.
T Consensus 563 aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk----~s------dg-d~laaiqlyika 628 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK----ES------DG-DGLAAIQLYIKA 628 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc----cc------cC-ccHHHHHHHHHc
Confidence 34455555666776665432 121111112233344555555544443321 11 11 113456777888
Q ss_pred CChHHHHHHHh--hcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHH
Q 046631 277 GCFDFARKIFD--NCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHA 354 (813)
Q Consensus 277 g~~~~A~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 354 (813)
|..-.|.+... +....|......+..++.+..-+++|=++| +.+.. +...+..+-+-.-+..|.++-+
T Consensus 629 ~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlf-eki~d---------~dkale~fkkgdaf~kaielar 698 (1636)
T KOG3616|consen 629 GKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLF-EKIHD---------FDKALECFKKGDAFGKAIELAR 698 (1636)
T ss_pred CCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHH-HHhhC---------HHHHHHHHHcccHHHHHHHHHH
Confidence 87777766542 222234444555555555555555555555 32211 1112222222222222322221
Q ss_pred HHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHH
Q 046631 355 YIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTH 434 (813)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 434 (813)
.. ++.. -+..-...-..+...|+++.|+..|-+... ....+.+......+..|..++
T Consensus 699 fa---fp~e-----------vv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~il 755 (1636)
T KOG3616|consen 699 FA---FPEE-----------VVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISIL 755 (1636)
T ss_pred hh---CcHH-----------HhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHH
Confidence 11 1000 011111223344556666666666644321 223344555666677777776
Q ss_pred HHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 046631 435 AYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVV 514 (813)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 514 (813)
+.+...... +..|..+.+.|+..|+++.|.++|-+.. .++--|..|.+.|+|+.|.++-.+.. |......
T Consensus 756 dniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~~-------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~ 825 (1636)
T KOG3616|consen 756 DNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEAD-------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATIS 825 (1636)
T ss_pred HHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhcc-------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHH
Confidence 665554322 1344556777777777777777776554 34556667777777777776654432 2222222
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCC
Q 046631 515 TIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGM 594 (813)
Q Consensus 515 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 594 (813)
.|-+-..-+-+.|++.+|+++|-.+..|+. .|..|-++|.
T Consensus 826 -----------------------------------~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~ 865 (1636)
T KOG3616|consen 826 -----------------------------------LYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGL 865 (1636)
T ss_pred -----------------------------------HHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCc
Confidence 233333444556666667666666666654 2556667777
Q ss_pred hHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHH
Q 046631 595 SERALSLFRSMKGCGIEPDA--ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEF 672 (813)
Q Consensus 595 ~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 672 (813)
.+..+++..+ ..|+. .|...+..-+...|++..|...|-+.. -|..-+++|-..+.|++|.++
T Consensus 866 ~ddmirlv~k-----~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 866 DDDMIRLVEK-----HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred chHHHHHHHH-----hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHH
Confidence 7766666655 23332 255555666666777777766554332 244556667777777777766
Q ss_pred HHHhCcC---CChHHHHH------HHHHHHHHhCCHHHHHHHH------HHHh---cCCCCCCCchhHHHHHHHHHhcCC
Q 046631 673 VKELGEE---GNVLEIWG------SLLGSCRLHGHSELAEVVA------KKLL---EMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 673 ~~~~~~~---~~~~~~~~------~l~~~~~~~g~~~~a~~~~------~~~~---~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
-+.-... ..+...|. +-...+.++|-.+.|.... +-++ .+...+..+..+.-++--+...|+
T Consensus 931 aktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk 1010 (1636)
T KOG3616|consen 931 AKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGK 1010 (1636)
T ss_pred HhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccc
Confidence 5542111 11111232 1122334444444433321 1111 111222225556667777778888
Q ss_pred cHHHHHHHHHHHHCC
Q 046631 735 WENVDKVRKEMRERG 749 (813)
Q Consensus 735 ~~~A~~~~~~m~~~~ 749 (813)
+++|-+-+-+..+.+
T Consensus 1011 ~edaskhyveaikln 1025 (1636)
T KOG3616|consen 1011 FEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhhhHhhHHHhhcc
Confidence 888877666665543
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=3.3e-07 Score=93.35 Aligned_cols=253 Identities=12% Similarity=0.144 Sum_probs=144.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HhccCCChHH--HHHHHHH-----------HHHcCCCCc
Q 046631 484 MIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLP---ACNPMGNIEL--GKQLHGF-----------SIRYLLDQN 547 (813)
Q Consensus 484 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~---~~~~~~~~~~--a~~~~~~-----------~~~~~~~~~ 547 (813)
|.-.+-..|+..+|..+|...++.+ .+|........+ +...-.++.. ....++. +........
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4455667788888888888887764 444433222221 1111111111 1111111 000000111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-HhHHHHHHHHH-H-hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046631 548 VFVGTSLIDMYSKSGVINYAANVFAKIPEKN-SVTYTTMILGY-G-QHGMSERALSLFRSMKGCGIEPDAITFVAVLSAC 624 (813)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~-~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 624 (813)
...-+.++.+|. +..+.+.++........ ...+.+++... . +...+.+|.+++...-+....-........+...
T Consensus 309 i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 309 IYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 122234444444 44567777777666332 33444444333 2 2235788888888887743222233445555567
Q ss_pred hccCcHHHHHHHHH--------HHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh--------CcCCChHHHHHH
Q 046631 625 SYAGLVDEGLQIFD--------LMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL--------GEEGNVLEIWGS 688 (813)
Q Consensus 625 ~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~~~ 688 (813)
...|+++.|.+++. .+.+. +.. +.+...++..+.+.++-+-|..++.+. ...+.....|.-
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~ 463 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE 463 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 78999999999998 44432 333 455566778888877655555554442 233333335666
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 689 LLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 689 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
+...-.++|+.++|...++++++.+|.+ ......+.-+|+.. +.+.|..+-+.+
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~n~~d--~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKFNPND--TDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHhCCch--HHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 6666677899999999999999999998 77777777777765 456666654443
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=9.6e-07 Score=84.03 Aligned_cols=407 Identities=14% Similarity=0.080 Sum_probs=215.7
Q ss_pred CChhHHHHHHcccCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHhhCCCChhHHHHHH
Q 046631 174 SKYDLVCKVFDTMRR---RNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTI-SFVNVFPALSSLGDYKSADVVY 249 (813)
Q Consensus 174 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~ 249 (813)
|++++|..++..+.. ++...|--+...+.-.|.+.+|..+-... |+.. .-..++...-+.++-++-..++
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh 144 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFH 144 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHH
Confidence 777777777766543 34445555555555667777777765442 3333 3333444445667766666666
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCC--CcchHHHHH-HHHHhCCCchHHHHHHHHHHHhCCC
Q 046631 250 GLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLER--NTEVWNTMI-GGYVQNNHPVEAIELFVQVLELDEI 326 (813)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li-~~~~~~g~~~~A~~~~~~~m~~~g~ 326 (813)
+.+... ..-.-+|..+.-..-.+.+|+.++.++... +-...|.-+ -+|.+..-++-+.++++.-+++.
T Consensus 145 ~~LqD~-------~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-- 215 (557)
T KOG3785|consen 145 SSLQDT-------LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-- 215 (557)
T ss_pred HHHhhh-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--
Confidence 655432 122334444444445688888888887653 444455433 45667777777777774445433
Q ss_pred CCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCC
Q 046631 327 VFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQG 406 (813)
Q Consensus 327 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 406 (813)
||+ |+..-+.+|. ..+.-.-..|..-..++.+.+
T Consensus 216 -pdS-tiA~NLkacn--------------------------------------------~fRl~ngr~ae~E~k~ladN~ 249 (557)
T KOG3785|consen 216 -PDS-TIAKNLKACN--------------------------------------------LFRLINGRTAEDEKKELADNI 249 (557)
T ss_pred -CCc-HHHHHHHHHH--------------------------------------------HhhhhccchhHHHHHHHHhcc
Confidence 221 1222222221 111111111111122222211
Q ss_pred CCCCHhHHH-HHHH-HHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHH
Q 046631 407 FMIDSVTVT-ALLS-AASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAM 484 (813)
Q Consensus 407 ~~pd~~t~~-~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 484 (813)
-.. .-+. -+++ -+.--.+-+.|.+++--+.+.-+ ...-.|+-.|.+.+++.+|..+.+++....|-....-.+
T Consensus 250 ~~~--~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP---EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgv 324 (557)
T KOG3785|consen 250 DQE--YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP---EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGV 324 (557)
T ss_pred ccc--chhHHHHHHcCeEEEeCCccHHHhchHHHhhCh---HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHH
Confidence 000 0000 0000 01111233444444433333221 122336667889999999999988887444433222222
Q ss_pred H-----HHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 046631 485 I-----AGYTQNGLLEEAFVAFRQMLEHNVTPNVV-TIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMY 558 (813)
Q Consensus 485 i-----~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 558 (813)
. .-........-|...|+-.-+.+..-|.. .-.++...+.-..+++++..++..+...-...|...+ .+.+++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk 403 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAK 403 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHH
Confidence 1 11122223445555565544444433322 1222333333445666777666666655444444444 467888
Q ss_pred HhcCCHHHHHHHHhhCCCC---CHhHHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHhccCcHHHH
Q 046631 559 SKSGVINYAANVFAKIPEK---NSVTYTTM-ILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVL-SACSYAGLVDEG 633 (813)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~a~~~~g~~~~a 633 (813)
+..|++.+|+++|-.+..+ |-.+|.++ ..+|.++++.+.|.+++-++. -..+..+...+| .-|.+.+.+--|
T Consensus 404 ~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999888754 45566554 567888888888877665443 334445555554 467788888888
Q ss_pred HHHHHHHHHhcCCCCChhHH
Q 046631 634 LQIFDLMQQEYKIQPSTEHY 653 (813)
Q Consensus 634 ~~~~~~~~~~~~~~p~~~~~ 653 (813)
-+.|+.+. ...|+++.|
T Consensus 481 aKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 481 AKAFDELE---ILDPTPENW 497 (557)
T ss_pred HHhhhHHH---ccCCCcccc
Confidence 88887776 557877766
No 75
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.13 E-value=2.2e-06 Score=89.11 Aligned_cols=276 Identities=13% Similarity=0.080 Sum_probs=156.5
Q ss_pred CChhHHHHHHcc--cCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHH
Q 046631 174 SKYDLVCKVFDT--MRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGL 251 (813)
Q Consensus 174 g~~~~a~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 251 (813)
|.+..|.++... ....|......+..++.+..-+++|-++|+++.. +...+.++.+-..+..|.++-+.
T Consensus 629 ~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarf 699 (1636)
T KOG3616|consen 629 GKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARF 699 (1636)
T ss_pred CCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHh
Confidence 555544443321 1123555556666777777777777777777643 22233333333333444443322
Q ss_pred HHHhCCCCCCcHH--HHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCC
Q 046631 252 LVKLGSEYVNDLF--VASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFD 329 (813)
Q Consensus 252 ~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~ 329 (813)
.- |... .-..-...+...|+++.|...|-+.. ..-..|.+-.....+.+|+.++ +.++... .-
T Consensus 700 af-------p~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~il-dniqdqk--~~ 764 (1636)
T KOG3616|consen 700 AF-------PEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISIL-DNIQDQK--TA 764 (1636)
T ss_pred hC-------cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHH-HHhhhhc--cc
Confidence 21 1111 11222333444566666665553321 1122344556677788888888 5554432 23
Q ss_pred hhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCC
Q 046631 330 DVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMI 409 (813)
Q Consensus 330 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 409 (813)
..-|..+.+.|+..|+++.|.++|... ..++-.|..|.++|+|++|.++-.+.. |...
T Consensus 765 s~yy~~iadhyan~~dfe~ae~lf~e~--------------------~~~~dai~my~k~~kw~da~kla~e~~--~~e~ 822 (1636)
T KOG3616|consen 765 SGYYGEIADHYANKGDFEIAEELFTEA--------------------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEA 822 (1636)
T ss_pred cccchHHHHHhccchhHHHHHHHHHhc--------------------chhHHHHHHHhccccHHHHHHHHHHhc--Cchh
Confidence 345677778888888888888877542 346667888999999999988866543 3344
Q ss_pred CHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHH
Q 046631 410 DSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYT 489 (813)
Q Consensus 410 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~ 489 (813)
....|..-..-+-..|++.+|.++|-.+-.- ...|.||-+.|..++.+++.++-.+. .-..+.-.+..-|-
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti~~p--------~~aiqmydk~~~~ddmirlv~k~h~d-~l~dt~~~f~~e~e 893 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITIGEP--------DKAIQMYDKHGLDDDMIRLVEKHHGD-HLHDTHKHFAKELE 893 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEccCc--------hHHHHHHHhhCcchHHHHHHHHhChh-hhhHHHHHHHHHHH
Confidence 4455555455566677777777766332211 23677888888888888877765421 11224445556666
Q ss_pred hCCChHHHHHHHHHH
Q 046631 490 QNGLLEEAFVAFRQM 504 (813)
Q Consensus 490 ~~~~~~~A~~~~~~m 504 (813)
..|+...|..-|-+.
T Consensus 894 ~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 894 AEGDLKAAEEHFLEA 908 (1636)
T ss_pred hccChhHHHHHHHhh
Confidence 677777776665443
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.12 E-value=7.5e-09 Score=114.06 Aligned_cols=180 Identities=18% Similarity=0.057 Sum_probs=146.7
Q ss_pred hcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHH
Q 046631 560 KSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQ 635 (813)
Q Consensus 560 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~ 635 (813)
..+++++|...+++..+ .+..+|..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34568899999998773 36788999999999999999999999999994 565 4567788889999999999999
Q ss_pred HHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCc--CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q 046631 636 IFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGE--EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM 712 (813)
Q Consensus 636 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 712 (813)
.++++. .+.|+ ...+..++..+...|++++|+..++++.. .|+.+..+..+..++...|+.++|...++++...
T Consensus 394 ~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 394 TINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 999998 45776 33444455567778999999999988743 3556657888889999999999999999999888
Q ss_pred CCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 713 DTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 713 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.|.+ ......++..|...| ++|...++++.+.
T Consensus 471 ~~~~--~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 471 EITG--LIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred cchh--HHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8887 777778888888887 5888888887753
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.11 E-value=1.2e-06 Score=93.01 Aligned_cols=298 Identities=10% Similarity=0.071 Sum_probs=194.2
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhc-
Q 046631 199 SWYVKTERYVEAVRQFRMMLRMGIRPSTI-SFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAEL- 276 (813)
Q Consensus 199 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 276 (813)
..+...|++++|++.++.-.. .-+|.. .+......+.+.|+.++|..++..+++.+++ |...|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd---n~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD---NYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHhhhc
Confidence 445677888888888876444 234544 4455556677888888888888888888843 444555555555222
Q ss_pred ----CChHHHHHHHhhcCCC--CcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHH
Q 046631 277 ----GCFDFARKIFDNCLER--NTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQ 350 (813)
Q Consensus 277 ----g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 350 (813)
.+.+....+++++... .......+.-.+.....+....+-|-..+-..|+++ +|+.+-..+....+.....
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 2466667777766432 111111121122222334444444435556667654 4555555566555555555
Q ss_pred HHHHHHHHhcccchhhh---hccCCCCCcchH--HHHHHHHHHCCCcHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcC
Q 046631 351 QLHAYIIKNFVALPVIV---LNAVIERDVVSW--NTMISAFVQNGLDDEGLMLVYEMQKQGFMID-SVTVTALLSAASNL 424 (813)
Q Consensus 351 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~ 424 (813)
+++.............- ...-..|....| ..+...|-..|++++|++++++.++. .|+ ...|..-.+.+-..
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 55555544211110000 001123444344 66678889999999999999999987 566 45677777889999
Q ss_pred CChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCC--C--Chh----hH--HHHHHHHHhCCCh
Q 046631 425 RNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGD--R--DQA----TW--NAMIAGYTQNGLL 494 (813)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~--~~~----~~--~~li~~~~~~~~~ 494 (813)
|++.+|...++.....+.....+.+-.+..+.++|++++|.+++......+ | |.. .| .....+|.+.|++
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999998888888999999999999999999998766332 2 222 23 3446789999999
Q ss_pred HHHHHHHHHHHH
Q 046631 495 EEAFVAFRQMLE 506 (813)
Q Consensus 495 ~~A~~~~~~m~~ 506 (813)
..|+..|....+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999888777654
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=1.5e-08 Score=101.88 Aligned_cols=213 Identities=15% Similarity=0.076 Sum_probs=150.8
Q ss_pred CChHHHHHHHHHHHHc-CCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHH
Q 046631 527 GNIELGKQLHGFSIRY-LLDQN--VFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALS 600 (813)
Q Consensus 527 ~~~~~a~~~~~~~~~~-~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 600 (813)
+..+.+..-+.+++.. ...|+ ...|..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4556666666666643 22322 45677888889999999999999988763 367899999999999999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcC
Q 046631 601 LFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEE 679 (813)
Q Consensus 601 ~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 679 (813)
.|++.++ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++....
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 5665 457777888888999999999999998854 675332223333455678899999999664322
Q ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHHHHh-------cCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 680 GNVLEIWGSLLGSCRLHGHSELAEVVAKKLL-------EMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 680 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
.+.. .|.. .......|+...+ ..++.+. ++.|+. +..|..+|.+|.+.|++++|...|++..+.+
T Consensus 195 ~~~~-~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~--~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKE-QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERL--CETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCcc-ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1111 3332 2222334554333 2333333 344555 6789999999999999999999999998654
No 79
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.10 E-value=2.8e-06 Score=91.80 Aligned_cols=620 Identities=13% Similarity=0.032 Sum_probs=325.8
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCC-hhHhhHHHH
Q 046631 72 IWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPS-RFVYNSLLN 150 (813)
Q Consensus 72 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~ 150 (813)
.|..|...|+..-+...|...|++..+.+ +. +......+...+++..+.+.|..+.-...+. .|- ...+|-+-
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD--at-daeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~- 567 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD--AT-DAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQ- 567 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhh-
Confidence 45555555555555666666666665544 22 5555666666666666666666552111111 000 00001000
Q ss_pred HhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh
Q 046631 151 MYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRR---RNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTI 227 (813)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 227 (813)
..+.+...++...|..-|+...+ .|..+|..+..+|.+.|++..|+++|.+... +.|+..
T Consensus 568 ---------------rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~ 630 (1238)
T KOG1127|consen 568 ---------------RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK 630 (1238)
T ss_pred ---------------ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH
Confidence 01111223677777777776554 4677899999999999999999999988876 556554
Q ss_pred hHHHHHH--HhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHh-------cCChHHHHHHHhhcCC-------
Q 046631 228 SFVNVFP--ALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAE-------LGCFDFARKIFDNCLE------- 291 (813)
Q Consensus 228 t~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~~A~~~~~~~~~------- 291 (813)
|..... .-+..|.++++...++.+....-. -....+.+...+.+ .|-...|...|+...+
T Consensus 631 -y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~---e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 631 -YGRFKEAVMECDNGKYKEALDALGLIIYAFSL---ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 222222 235678899999888887764321 12222333333333 2333333333332211
Q ss_pred ----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchhh
Q 046631 292 ----RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPVI 366 (813)
Q Consensus 292 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~ 366 (813)
.+...|-.+ .+|..+| -..+ .-.|+......+..-.-+.+....-. +.-...+ +.... .
T Consensus 707 h~~~~~~~~Wi~a----------sdac~~f-~q~e--~~~vn~h~l~il~~q~e~~~~l~~~d-~l~Lg~~c~~~hl--s 770 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVA----------SDACYIF-SQEE--PSIVNMHYLIILSKQLEKTGALKKND-LLFLGYECGIAHL--S 770 (1238)
T ss_pred HhhhhhHHHHHHH----------hHHHHHH-HHhc--ccchHHHHHHHHHHHHHhcccCcchh-HHHHHHHHhhHHH--H
Confidence 112222222 2233333 2222 11344333333333233333321111 1101111 00000 0
Q ss_pred hhccCCCCCcchHHHHHHHHHH----CC----CcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 046631 367 VLNAVIERDVVSWNTMISAFVQ----NG----LDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLL 438 (813)
Q Consensus 367 ~~~~~~~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 438 (813)
...+..+|..++..|.+ .| +...|+..+....+. -.-+..+|+.|.- ....|++..+.-.+-...
T Consensus 771 -----l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGV-lsg~gnva~aQHCfIks~ 843 (1238)
T KOG1127|consen 771 -----LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGV-LSGIGNVACAQHCFIKSR 843 (1238)
T ss_pred -----HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHH-hhccchhhhhhhhhhhhh
Confidence 11224556666555544 22 224566777766554 1334556655543 355566666666665555
Q ss_pred HhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHH----HCCCCCCH
Q 046631 439 RHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQML----EHNVTPNV 513 (813)
Q Consensus 439 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~----~~~~~p~~ 513 (813)
...+....++..+.-.+.+..+++-|...|.......| |.+.|--....-...|+.-+++.+|..-- ..|-.|+.
T Consensus 844 ~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f 923 (1238)
T KOG1127|consen 844 FSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKF 923 (1238)
T ss_pred hccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchh
Confidence 55555557777788889999999999999999988888 77888777767777888888888887621 12334444
Q ss_pred HHHHHHHHHhccCCChHHHHHH----------HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCC
Q 046631 514 VTIASVLPACNPMGNIELGKQL----------HGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP-----EKN 578 (813)
Q Consensus 514 ~t~~~ll~~~~~~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~ 578 (813)
.-+..........|+.+.-... .+... .+.+.+...|.+.....-+.+....|.++..+.. +-+
T Consensus 924 ~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf-~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d 1002 (1238)
T KOG1127|consen 924 QYWLCATEIHLQNGNIEESINTARKISSASLALSYYF-LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLD 1002 (1238)
T ss_pred hHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHH-hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4333333344455554432222 12111 1445566777777777777787777777766643 235
Q ss_pred HhHHHHH----HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHH
Q 046631 579 SVTYTTM----ILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHY 653 (813)
Q Consensus 579 ~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~ 653 (813)
...||.+ .+.++..|.++.|..-+..... ..++..-..-+.. .-.++++++.+.|+++....+-..+ +...
T Consensus 1003 ~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl 1078 (1238)
T KOG1127|consen 1003 ESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLL 1078 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhh
Confidence 5555543 3445556777755543332111 1112121111211 3467888888888888754333334 4445
Q ss_pred HHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc---CCCCCCCchhHHHHHHHH
Q 046631 654 CCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLE---MDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 654 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~~~l~~~~ 729 (813)
..+.......+.-+.|...+-+. ...+....+...|...+.-..+-.....+.+++.. .+--. -..-.++..+|
T Consensus 1079 ~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~--~~~~ll~e~i~ 1156 (1238)
T KOG1127|consen 1079 CKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFC--WPPGLLKELIY 1156 (1238)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhc--cChhHHHHHHH
Confidence 55666667777777777665443 33333332444444444433333333333333222 11111 11123445678
Q ss_pred HhcCCcHHHHHHHHHHHHC
Q 046631 730 AEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 730 ~~~g~~~~A~~~~~~m~~~ 748 (813)
.++||-....+.+++..-.
T Consensus 1157 ~~~~r~~~vk~~~qr~~h~ 1175 (1238)
T KOG1127|consen 1157 ALQGRSVAVKKQIQRAVHS 1175 (1238)
T ss_pred HHhhhhHHHHHHHHHHHhc
Confidence 8888888877777777643
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.10 E-value=2.5e-08 Score=97.80 Aligned_cols=197 Identities=19% Similarity=0.166 Sum_probs=125.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 046631 478 QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDM 557 (813)
Q Consensus 478 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 557 (813)
...+..+...|...|++++|...+++..+.. |+. ...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~----------------------------------~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDD----------------------------------YLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccc----------------------------------HHHHHHHHHH
Confidence 4567777888888888888888888876642 321 2233444455
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHH
Q 046631 558 YSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVDEG 633 (813)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a 633 (813)
|...|++++|.+.+++.. ..+...+..+...+...|++++|.+.+++.......+ ....+..+...+...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 555566666666555444 2244556666666777777777777777776542222 233455566667777788888
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCc-CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 634 LQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGE-EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 634 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
...+++..+. .|+ ...+..++..+...|++++|.+.+++... .+..+..+..+...+...|+.+.|..+.+.+..
T Consensus 155 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 155 EKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8777777643 443 56677777777778888888777776522 344444555666777777777777777766655
Q ss_pred CC
Q 046631 712 MD 713 (813)
Q Consensus 712 ~~ 713 (813)
..
T Consensus 232 ~~ 233 (234)
T TIGR02521 232 LF 233 (234)
T ss_pred hC
Confidence 43
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.9e-06 Score=82.69 Aligned_cols=262 Identities=12% Similarity=0.017 Sum_probs=195.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVT-IASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLI 555 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 555 (813)
|+.....+...+...|+.++|+..|++.+.. .|+..+ .....-.+...|+.+....+...+....- .....|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhh
Confidence 7778899999999999999999999998763 454433 11112223566777777776666554320 1112222223
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHH
Q 046631 556 DMYSKSGVINYAANVFAKIPEK---NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVD 631 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~ 631 (813)
.......+++.|+.+-++..+- ++..|-.-...+...|+.++|.-.|+..+. +.| +-..|..|+.+|...|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHH
Confidence 3345567888898888877643 444555555778899999999999999887 565 4569999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHH-HHHhc-cCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 046631 632 EGLQIFDLMQQEYKIQPSTEHYCCVA-DMLGR-VGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKK 708 (813)
Q Consensus 632 ~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 708 (813)
+|..+-+...+.+ .-+..+...++ ..+.- .---++|.+++++. ..+|......+.+...|...|.++.++.++++
T Consensus 386 EA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 9998887776542 23577776664 44433 33468899999885 66776655888999999999999999999999
Q ss_pred HhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 709 LLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 709 ~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.+...|+. ..+..|++++.....+.+|.+.|......
T Consensus 464 ~L~~~~D~---~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 464 HLIIFPDV---NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHhhcccc---HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999985 77899999999999999999999988843
No 82
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=3.8e-05 Score=81.40 Aligned_cols=567 Identities=11% Similarity=0.079 Sum_probs=287.0
Q ss_pred CCcchHHHHHH--HHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhC--------
Q 046631 68 PTTVIWNTIII--GFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCF-------- 137 (813)
Q Consensus 68 ~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------- 137 (813)
=|..|-..|+. -|..-|+.+.|++-.+.+. +...|..+.+.|.+.++++.|.-.+..|....
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 45555555554 4677888888888877774 34578899999999999998888887775331
Q ss_pred CCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHH
Q 046631 138 SNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMM 217 (813)
Q Consensus 138 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 217 (813)
.+.+...-....-.-... |.+++|..++.+-.+ |..|=..|-..|.+.+|+++-+.=
T Consensus 796 ~q~~~e~eakvAvLAieL------------------gMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~ 852 (1416)
T KOG3617|consen 796 QQNGEEDEAKVAVLAIEL------------------GMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETK 852 (1416)
T ss_pred HhCCcchhhHHHHHHHHH------------------hhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhc
Confidence 011101100011111112 788888888866544 334445566678888888876653
Q ss_pred HHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchH
Q 046631 218 LRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVW 297 (813)
Q Consensus 218 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 297 (813)
..-.+ ..||-.-..-+-..++.+.|+++|+....... .+...| . .+.....+..+.+.++. .|
T Consensus 853 DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~haf------ev~rmL-~-----e~p~~~e~Yv~~~~d~~--L~ 915 (1416)
T KOG3617|consen 853 DRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAF------EVFRML-K-----EYPKQIEQYVRRKRDES--LY 915 (1416)
T ss_pred cceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHH------HHHHHH-H-----hChHHHHHHHHhccchH--HH
Confidence 32212 22444444455556777778777765422111 111111 0 12233333444444443 33
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcc
Q 046631 298 NTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVV 377 (813)
Q Consensus 298 ~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (813)
.-....+-..|..+.|+.+| ...+ -|-++++..|-.|+.++|.++-++ .-|..
T Consensus 916 ~WWgqYlES~GemdaAl~~Y-~~A~---------D~fs~VrI~C~qGk~~kAa~iA~e-----------------sgd~A 968 (1416)
T KOG3617|consen 916 SWWGQYLESVGEMDAALSFY-SSAK---------DYFSMVRIKCIQGKTDKAARIAEE-----------------SGDKA 968 (1416)
T ss_pred HHHHHHHhcccchHHHHHHH-HHhh---------hhhhheeeEeeccCchHHHHHHHh-----------------cccHH
Confidence 33445555679999999998 4333 356777778888999988887653 24566
Q ss_pred hHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHH---------------HHHHHHHHHHhCC
Q 046631 378 SWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDV---------------GKQTHAYLLRHGI 442 (813)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~---------------a~~~~~~~~~~~~ 442 (813)
....|.+.|-..|++.+|..+|.+.+ +|...|+.|-.++--+. |.++|++ .|.
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~ 1036 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGG 1036 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cch
Confidence 67788899999999999999998765 34555554443332221 1122221 110
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHhh------------cCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 046631 443 HFEGMESYLIDMYAKSGLIKTARQIFEK------------NDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVT 510 (813)
Q Consensus 443 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~------------~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 510 (813)
-....+..|-+.|.+.+|.++-=+ -.....|....+.-...|+.+.++++|..++-..++
T Consensus 1037 ----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---- 1108 (1416)
T KOG3617|consen 1037 ----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---- 1108 (1416)
T ss_pred ----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----
Confidence 112244556666666666554211 010122555556666666666677777666655443
Q ss_pred CCHHHHHHHHHHhccCCChHHHHHHHHHHHHc--CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHH
Q 046631 511 PNVVTIASVLPACNPMGNIELGKQLHGFSIRY--LLDQ---NVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTM 585 (813)
Q Consensus 511 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 585 (813)
|.-.+..|... ++.-.+++-+.|.-. +..+ ...+...+.+.+.++|.+..|-+-|...-.+ -..
T Consensus 1109 -----~~~AlqlC~~~-nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-----l~A 1177 (1416)
T KOG3617|consen 1109 -----FSGALQLCKNR-NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-----LSA 1177 (1416)
T ss_pred -----HHHHHHHHhcC-CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH-----HHH
Confidence 33334444332 222233333333211 1111 1234445556666777766666665544321 112
Q ss_pred HHHHHhcCChHHHHHHH-------------HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhH
Q 046631 586 ILGYGQHGMSERALSLF-------------RSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEH 652 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~-------------~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 652 (813)
+.++.+.|+.++..-.- +-+.......++.+...++.-|-+...++.--.+|..... + .+..
T Consensus 1178 MraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAq---i--Eiee 1252 (1416)
T KOG3617|consen 1178 MRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQ---I--EIEE 1252 (1416)
T ss_pred HHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHH---h--hHHH
Confidence 33333444432211000 0111112233333333333333333323222222221110 0 1111
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHH----------HHHHH-hCCHHHHHHHHHHHhcCCCCCC----
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLL----------GSCRL-HGHSELAEVVAKKLLEMDTRNS---- 717 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~----------~~~~~-~g~~~~a~~~~~~~~~~~p~~~---- 717 (813)
|..+.. ..|-+++|.+-+.++.........++.|- ..... ..|....+.-.+-+++. |..+
T Consensus 1253 ~q~ydK---a~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~llee-p~ld~~Ir 1328 (1416)
T KOG3617|consen 1253 LQTYDK---AMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEE-PILDDIIR 1328 (1416)
T ss_pred HhhhhH---HhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhC-cCCCCcch
Confidence 111111 11233444444444432222222233222 22111 12444455555555442 3321
Q ss_pred CchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 718 MPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 718 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
....+.+|...|....+|..|.+.+++|..+-
T Consensus 1329 ~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1329 CTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 13456778888999999999999999999653
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.6e-07 Score=93.32 Aligned_cols=91 Identities=14% Similarity=0.044 Sum_probs=77.8
Q ss_pred HHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCc
Q 046631 657 ADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNW 735 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~ 735 (813)
+..+.+.|++..|+..|.++ ...|+....|.....+|.+.|++..|+.-.+..++++|+. ...|.--+.++....+|
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~--~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF--IKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHH
Confidence 56677889999999988886 5567777788899999999999999999999999999988 88888888888888999
Q ss_pred HHHHHHHHHHHHCC
Q 046631 736 ENVDKVRKEMRERG 749 (813)
Q Consensus 736 ~~A~~~~~~m~~~~ 749 (813)
++|.+.|.+.++..
T Consensus 443 dkAleay~eale~d 456 (539)
T KOG0548|consen 443 DKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998888543
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.05 E-value=2.8e-05 Score=80.64 Aligned_cols=227 Identities=12% Similarity=0.037 Sum_probs=135.8
Q ss_pred hhhhHHHHHhhcCCcchHHHhhhcCCCC---CcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHh
Q 046631 41 TIRSRLSKICQEGRPHLARQLFDSITRP---TTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKAC 117 (813)
Q Consensus 41 ~~~~~l~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~ 117 (813)
.+....+..|-.+.+..-.++.+.+... ...|.....-.+..-|+.++|......-.+.. +. +.+.|..+.-.+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~-S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LK-SHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cc-cchhHHHHHHHH
Confidence 4556666666655555444444444222 22233333334566788899999888887765 44 677888888878
Q ss_pred hccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccC---CCCcccH
Q 046631 118 AETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMR---RRNVVAW 194 (813)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~ 194 (813)
....++++|.+.+....+.+ ..|..++.-|--.=+.. ++++.........- ......|
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~Qm------------------Rd~~~~~~tr~~LLql~~~~ra~w 146 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQM------------------RDYEGYLETRNQLLQLRPSQRASW 146 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHH------------------HhhhhHHHHHHHHHHhhhhhHHHH
Confidence 88889999999999888765 23333333322222222 44433333333222 2345678
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHH------hhCCCChhHHHHHHHHHHHhCCCCCCcHHHHH
Q 046631 195 NTIVSWYVKTERYVEAVRQFRMMLRMG-IRPSTISFVNVFPA------LSSLGDYKSADVVYGLLVKLGSEYVNDLFVAS 267 (813)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 267 (813)
..+..++--.|++..|..+++...+.. -.|+...|...... ....|.++.|.+.+..-...-+ .....-.
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~---Dkla~~e 223 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV---DKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH---HHHHHhh
Confidence 888888888999999999999987764 24666655443332 2455666666555443332221 1222233
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCC
Q 046631 268 SAIFMYAELGCFDFARKIFDNCLER 292 (813)
Q Consensus 268 ~li~~~~~~g~~~~A~~~~~~~~~~ 292 (813)
.-...+.+.+++++|..++..+..+
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 4455666777777777777766554
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.02 E-value=2.5e-07 Score=96.90 Aligned_cols=241 Identities=18% Similarity=0.133 Sum_probs=142.2
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHh-----CCCCc---chHHHHHHHHHhcCCHHHHHHHHhhcCCC--------C
Q 046631 412 VTVTALLSAASNLRNQDVGKQTHAYLLRH-----GIHFE---GMESYLIDMYAKSGLIKTARQIFEKNDSG--------D 475 (813)
Q Consensus 412 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~ 475 (813)
.|+..+...|...|+++.|..++...++. |.... ...+.+...|...+++++|..+|+++... .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555666677777777777777766654 21111 34456888899999999999988864321 2
Q ss_pred C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCC-CCch-hHHH
Q 046631 476 R-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLL-DQNV-FVGT 552 (813)
Q Consensus 476 ~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~ 552 (813)
| -..+++.|...|.+.|++++|...++...+- ++. ..|. .+.+ ..++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~--~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEK--LLGASHPEVAAQLS 329 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHH--hhccChHHHHHHHH
Confidence 3 2346777888888888888888888776541 111 0000 0111 1234
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccC
Q 046631 553 SLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA----ITFVAVLSACSYAG 628 (813)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~a~~~~g 628 (813)
.+...++..+++++|..+++.. ++++... +.++. .+++.|...|.+.|
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~a------------------------l~i~~~~----~g~~~~~~a~~~~nl~~l~~~~g 381 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKA------------------------LKIYLDA----PGEDNVNLAKIYANLAELYLKMG 381 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHH------------------------HHHHHhh----ccccchHHHHHHHHHHHHHHHhc
Confidence 4455566666666666665422 2222111 12222 25666666666666
Q ss_pred cHHHHHHHHHHHHHhc----C-CCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh--------CcCCChHHHHHHHHHHHH
Q 046631 629 LVDEGLQIFDLMQQEY----K-IQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL--------GEEGNVLEIWGSLLGSCR 694 (813)
Q Consensus 629 ~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~~~l~~~~~ 694 (813)
++++|.+++++++... + ..+. -..++.|...|.+.+++.+|.++|.+. +..|+....|..|...|.
T Consensus 382 k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~ 461 (508)
T KOG1840|consen 382 KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYR 461 (508)
T ss_pred chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence 6666666666655431 1 1121 445566666666666666666665553 344555557778888888
Q ss_pred HhCCHHHHHHHHHHHh
Q 046631 695 LHGHSELAEVVAKKLL 710 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~ 710 (813)
..|+++.|+++.+.++
T Consensus 462 ~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 462 AQGNYEAAEELEEKVL 477 (508)
T ss_pred HcccHHHHHHHHHHHH
Confidence 8888888887777665
No 86
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=0.0001 Score=80.15 Aligned_cols=234 Identities=13% Similarity=0.160 Sum_probs=151.1
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHH-HHHHHHhc---------------------------cCC
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTP-NVVTI-ASVLPACN---------------------------PMG 527 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~t~-~~ll~~~~---------------------------~~~ 527 (813)
|+...+.-+.++...+-+.+.+++++++.-.+-.. ..... +.++-... ..+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQ 1062 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhh
Confidence 44555666778888888888888888876432111 11111 11111111 112
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046631 528 NIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
-+++|..+|+.. ..+....+.||+ ..+.+++|.++-++..+ ...|..+..+-.+.|...+|++-|-+
T Consensus 1063 LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik--- 1129 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK--- 1129 (1666)
T ss_pred HHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh---
Confidence 223333333221 122222233322 34556666666555544 45799999999999999999988754
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHH
Q 046631 608 CGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWG 687 (813)
Q Consensus 608 ~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 687 (813)
.-|+..|..+++.+.+.|.+++-.+++...+++ .-+|.+. +.|+.+|++.+++.+-++++. -|+.. -..
T Consensus 1130 ---adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A-~i~ 1198 (1666)
T KOG0985|consen 1130 ---ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVA-NIQ 1198 (1666)
T ss_pred ---cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCch-hHH
Confidence 235678999999999999999999999777665 5556544 568999999999999887764 35555 566
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKE 744 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (813)
.++.-|...|.++.|.-+|... +.+..|+..+...|.+..|...-++
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7788888888888888887642 3355566666666777666554433
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=9.9e-06 Score=82.94 Aligned_cols=189 Identities=10% Similarity=0.009 Sum_probs=93.2
Q ss_pred cCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHH
Q 046631 458 SGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQN-GLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLH 536 (813)
Q Consensus 458 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 536 (813)
.+..+.+.++...++...|....=+.+..++... ..+.++.+++...-+....-........+......|+++.|.+++
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3455666666666665445443333333333222 246667777666555321111233444455566677777777777
Q ss_pred H--------HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 046631 537 G--------FSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGC 608 (813)
Q Consensus 537 ~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 608 (813)
. .+.+.+.. +.+..+++..|.+.++-+.|..++.+. +..|+.-...
T Consensus 400 ~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~A------------------------i~~~~~~~t~ 453 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSA------------------------IKWWRKQQTG 453 (652)
T ss_pred HHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHH------------------------HHHHHHhccc
Confidence 6 33333332 334455666666666655555555432 2222211110
Q ss_pred CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhC
Q 046631 609 GIEPDA-ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELG 677 (813)
Q Consensus 609 g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 677 (813)
.+.. .++..+...-.+.|+-++|..+++++.+. -.+|..+...++.+|++. +.+.|..+-+.++
T Consensus 454 --s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 454 --SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred --chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 0111 12222222233456666666666666632 123466666666666654 3556666655553
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=2.2e-07 Score=93.49 Aligned_cols=198 Identities=13% Similarity=0.027 Sum_probs=129.1
Q ss_pred HhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhcCChHHH
Q 046631 522 ACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSVTYTTMILGYGQHGMSERA 598 (813)
Q Consensus 522 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A 598 (813)
.+...|+.+.|...+....+.. +.+...|+.+...|...|++++|.+.|++..+ | +..+|..+..++...|++++|
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3444444444444444444432 12456788888889999999999999988763 3 567888889999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHH--HHHHHHHHh
Q 046631 599 LSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVV--EAYEFVKEL 676 (813)
Q Consensus 599 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~ 676 (813)
++.|++..+ ..|+..........+...++.++|...|.+.... ..|+...+ .++..+ .|++. ++.+.+.+.
T Consensus 152 ~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~ 224 (296)
T PRK11189 152 QDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-NIVEFY--LGKISEETLMERLKAG 224 (296)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccHH-HHHHHH--ccCCCHHHHHHHHHhc
Confidence 999999998 4565432222222344677899999999776532 23443222 333333 44443 333333321
Q ss_pred -C----cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 677 -G----EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 677 -~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
. ..+....+|..++..+.+.|++++|+..|+++++.+|.+. ..+...+..+
T Consensus 225 ~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~-~e~~~~~~e~ 280 (296)
T PRK11189 225 ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF-VEHRYALLEL 280 (296)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH-HHHHHHHHHH
Confidence 1 1223445899999999999999999999999999997541 4444444433
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.98 E-value=1.5e-05 Score=86.38 Aligned_cols=171 Identities=15% Similarity=0.076 Sum_probs=116.1
Q ss_pred HHHHHHHHHhCCCCCh-hHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCC---CCcccHHHHHHHHH
Q 046631 127 KAVHCHFIRCFSNPSR-FVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRR---RNVVAWNTIVSWYV 202 (813)
Q Consensus 127 ~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 202 (813)
..++..+....+.++- ..|..|-..|... .+...|.+.|+..-+ .|..++......|+
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~------------------~Dm~RA~kCf~KAFeLDatdaeaaaa~adtya 537 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDS------------------DDMKRAKKCFDKAFELDATDAEAAAASADTYA 537 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHH------------------HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh
Confidence 3333334444444443 4677787888776 677788888877654 46678888899999
Q ss_pred cCCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCCh
Q 046631 203 KTERYVEAVRQFRMMLRMGIRPS---TISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCF 279 (813)
Q Consensus 203 ~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 279 (813)
+..+++.|..+.-.--+. .|- ...|..+--.+...++...+..-|+...+..+. |...|..|..+|.++|++
T Consensus 538 e~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk---D~n~W~gLGeAY~~sGry 612 (1238)
T KOG1127|consen 538 EESTWEEAFEICLRAAQK--APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK---DYNLWLGLGEAYPESGRY 612 (1238)
T ss_pred ccccHHHHHHHHHHHhhh--chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch---hHHHHHHHHHHHHhcCce
Confidence 999999998884332221 121 112333333456778888888888888887765 888899999999999999
Q ss_pred HHHHHHHhhcCCCCcchHHH---HHHHHHhCCCchHHHHHHHHH
Q 046631 280 DFARKIFDNCLERNTEVWNT---MIGGYVQNNHPVEAIELFVQV 320 (813)
Q Consensus 280 ~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~ 320 (813)
..|.++|.+...-++.++.. .....+..|.+.+|++.+...
T Consensus 613 ~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 613 SHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred ehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999998776544443322 233456678888888888333
No 90
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=3.8e-08 Score=92.30 Aligned_cols=234 Identities=10% Similarity=0.013 Sum_probs=136.5
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcC
Q 046631 380 NTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSG 459 (813)
Q Consensus 380 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 459 (813)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-..||..|-++|.+..++..|..++...++.-+..........+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 46788899999999999999998887 5666677766677777777777777766666554433344444555555566
Q ss_pred CHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHH
Q 046631 460 LIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGF 538 (813)
Q Consensus 460 ~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 538 (813)
+.++|.++++...+.+| ++.....+..+|.-.++++-|+..|+++.+.|+. +...|+.+--+|...++++.+..-|+.
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 66666666665544444 4445555555555666666666666666665532 333444444444444444444444433
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046631 539 SIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFV 618 (813)
Q Consensus 539 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 618 (813)
....--.|+ .-...|..+.......|++..|-+.|+-....+ .-....++
T Consensus 384 Alstat~~~-----------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealn 433 (478)
T KOG1129|consen 384 ALSTATQPG-----------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALN 433 (478)
T ss_pred HHhhccCcc-----------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHH
Confidence 332211111 123345555555555666666666666655532 22234566
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCC
Q 046631 619 AVLSACSYAGLVDEGLQIFDLMQQEYKIQPS 649 (813)
Q Consensus 619 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 649 (813)
.|.-.-.+.|++++|..++.... .+.|+
T Consensus 434 NLavL~~r~G~i~~Arsll~~A~---s~~P~ 461 (478)
T KOG1129|consen 434 NLAVLAARSGDILGARSLLNAAK---SVMPD 461 (478)
T ss_pred hHHHHHhhcCchHHHHHHHHHhh---hhCcc
Confidence 66655566777777777776665 33555
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.94 E-value=5.3e-06 Score=78.85 Aligned_cols=197 Identities=11% Similarity=0.056 Sum_probs=98.3
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHH
Q 046631 524 NPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALS 600 (813)
Q Consensus 524 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 600 (813)
...|+...++.....+.+.. +.|...|..-..+|...|++..|+.=++... ..+...+--+-..+...|+.+.++.
T Consensus 166 ~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred hcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH
Confidence 34455555555555444432 3355555555566666666666655444332 3445555555555566666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcC
Q 046631 601 LFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEE 679 (813)
Q Consensus 601 ~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 679 (813)
..++-++ +.||.......-. .+....+.++.| ....+.++|.++++-.++. ..+
T Consensus 245 ~iRECLK--ldpdHK~Cf~~YK------klkKv~K~les~-----------------e~~ie~~~~t~cle~ge~vlk~e 299 (504)
T KOG0624|consen 245 EIRECLK--LDPDHKLCFPFYK------KLKKVVKSLESA-----------------EQAIEEKHWTECLEAGEKVLKNE 299 (504)
T ss_pred HHHHHHc--cCcchhhHHHHHH------HHHHHHHHHHHH-----------------HHHHhhhhHHHHHHHHHHHHhcC
Confidence 6666555 4555432111000 000111111111 1122345555555554443 333
Q ss_pred CChH----HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 680 GNVL----EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 680 ~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
|..+ .++..+-.+++..|++.+|++...++++.+|++ ...+.--+.+|.-...+++|+.-|++..+.
T Consensus 300 p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~d--v~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 300 PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDD--VQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 3311 123333344455566666666666666666666 666666666666666666666666666643
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.89 E-value=2.8e-06 Score=90.31 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=57.4
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCC-ChHHHHHHHHHHHHHhC
Q 046631 620 VLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEG-NVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 620 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 697 (813)
+...|...|++++|++++++.++ ..|+ +..|..-+.+|-+.|++++|.+.++....-. ..-.+-+.....+.+.|
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 33444555555555555555552 2454 5555555555555555555555555553222 11112233344444555
Q ss_pred CHHHHHHHHHHHhcCCCCC--CC-----chhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 698 HSELAEVVAKKLLEMDTRN--SM-----PGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~~--~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
++++|+..+......+-++ +. ..+..--|.+|.+.|++..|++.+..+
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555443332111 00 011122345555556555555544443
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.3e-06 Score=86.57 Aligned_cols=253 Identities=16% Similarity=0.069 Sum_probs=158.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCCh
Q 046631 450 YLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNI 529 (813)
Q Consensus 450 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 529 (813)
.+.++..+..+++.|.+.+........+..-++....+|...|.+.++...-....+.|-. ...-|+.+-.+
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~------- 300 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKA------- 300 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHH-------
Confidence 3556666666666676666665543434445566667778877777777666665544311 11111111111
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 046631 530 ELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCG 609 (813)
Q Consensus 530 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 609 (813)
+..+..+|.+.++++.|...|++...+... -....+....++++.......-
T Consensus 301 ---------------------~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~-- 352 (539)
T KOG0548|consen 301 ---------------------LARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY-- 352 (539)
T ss_pred ---------------------HHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--
Confidence 112344666677788888877765421100 1112233445566655555544
Q ss_pred CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHH
Q 046631 610 IEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIW 686 (813)
Q Consensus 610 ~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ 686 (813)
+.|... -...-...+.+.|++..|...|.++++. .| |...|....-+|.+.|.+..|+.=.+.. ..+|+....|
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence 334332 1222255677889999999999998865 57 4889999999999999999888765554 5566666677
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 046631 687 GSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRK 743 (813)
Q Consensus 687 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 743 (813)
..=+.++....+++.|.+.|.+.++.+|++ ..+...+..++......+...++.+
T Consensus 430 ~RKg~al~~mk~ydkAleay~eale~dp~~--~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 430 LRKGAALRAMKEYDKALEAYQEALELDPSN--AEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchh--HHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 766777777888999999999999999988 7777777776665433333334433
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.89 E-value=5.6e-07 Score=80.95 Aligned_cols=192 Identities=13% Similarity=0.074 Sum_probs=160.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhc
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIPEK---NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA-ITFVAVLSACSY 626 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~ 626 (813)
...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+.|++..+ +.|+. ...|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHh
Confidence 445667799999999999999998843 467899999999999999999999999998 45554 467777777889
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHH
Q 046631 627 AGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEV 704 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 704 (813)
.|.+++|.+.|++.... -.-|. ..+|..++-+-.+.|+.+.|.+.+++. ...|+.+...-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 99999999999999876 22333 788999999999999999999999886 5667666688888999999999999999
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 705 VAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 705 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
.+++.....+-. ...+-+.+.+-...|+-+.|.++=..+..
T Consensus 195 ~~~~~~~~~~~~--A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGGAQ--AESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccccc--HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999998877765 67777777778888999988888777764
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=3.2e-07 Score=90.70 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=116.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcH
Q 046631 555 IDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY----AGLV 630 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~ 630 (813)
..+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhH
Confidence 34567788889888888765 5667777788899999999999999999987 44444 44455555432 3368
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCH-HHHHHHHHH
Q 046631 631 DEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHS-ELAEVVAKK 708 (813)
Q Consensus 631 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 708 (813)
.+|..+|+++... ..+++.+.+.+..+....|++++|.+++++. ..+|..++++..++-+....|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 9999999998754 3467888899999999999999999998885 56677777888888888888877 777888888
Q ss_pred HhcCCCCC
Q 046631 709 LLEMDTRN 716 (813)
Q Consensus 709 ~~~~~p~~ 716 (813)
+....|..
T Consensus 262 L~~~~p~h 269 (290)
T PF04733_consen 262 LKQSNPNH 269 (290)
T ss_dssp CHHHTTTS
T ss_pred HHHhCCCC
Confidence 88888875
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=8.1e-05 Score=79.05 Aligned_cols=449 Identities=13% Similarity=0.076 Sum_probs=231.4
Q ss_pred Hhhc-CCcchHHHhhhcCCCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCC-------CCCCcccHHHHHHHhhcc
Q 046631 49 ICQE-GRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPY-------TSCDNYTYSSVLKACAET 120 (813)
Q Consensus 49 ~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------~~~~~~~~~~ll~~~~~~ 120 (813)
+|.. |+.|.|.+.++.+++ -..|..|.+.+.+..+++-|.-.+..|....+. ..++ .+=..+.......
T Consensus 737 fyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 3444 777777666655543 567999999999999888887777666432100 1111 2223333344577
Q ss_pred CCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCC-CcccHHHHHH
Q 046631 121 RNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRR-NVVAWNTIVS 199 (813)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~ 199 (813)
|.+++|..++..-.+.. .|=..|-.. |.|++|.++-+.-.+- -..||..-..
T Consensus 814 gMlEeA~~lYr~ckR~D---------LlNKlyQs~------------------g~w~eA~eiAE~~DRiHLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRYD---------LLNKLYQSQ------------------GMWSEAFEIAETKDRIHLRNTYYNYAK 866 (1416)
T ss_pred hhHHHHHHHHHHHHHHH---------HHHHHHHhc------------------ccHHHHHHHHhhccceehhhhHHHHHH
Confidence 88899988888766542 233444445 9999999887764431 1235555555
Q ss_pred HHHcCCChhHHHHHHHHH----------HHCC---------CCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCC
Q 046631 200 WYVKTERYVEAVRQFRMM----------LRMG---------IRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYV 260 (813)
Q Consensus 200 ~~~~~g~~~~A~~l~~~m----------~~~g---------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 260 (813)
-+-..++.+.|++.|++- +... -.-|...|.---..+-..|+.+.|+.+|..+..
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 555677788888777652 2111 011222222223333455666666666644432
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHh
Q 046631 261 NDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAV 340 (813)
Q Consensus 261 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~ 340 (813)
|-+++...|-.|+.++|-++-++- .|......|.+.|-..|++.+|+.+| ... .+|...|+.|
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~Ff-TrA---------qafsnAIRlc 1003 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFF-TRA---------QAFSNAIRLC 1003 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHH-HHH---------HHHHHHHHHH
Confidence 334566667778888888777653 45566777888899999999999988 333 3556666655
Q ss_pred cccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHH--------HHHHCCCC--CC
Q 046631 341 SQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVY--------EMQKQGFM--ID 410 (813)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~--pd 410 (813)
-..+--++ ..-+..+..+.+.. ... .--+.-..-....+..|-++|.+.+|+++-- ++...++. .|
T Consensus 1004 KEnd~~d~-L~nlal~s~~~d~v--~aA-rYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sD 1079 (1416)
T KOG3617|consen 1004 KENDMKDR-LANLALMSGGSDLV--SAA-RYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSD 1079 (1416)
T ss_pred HhcCHHHH-HHHHHhhcCchhHH--HHH-HHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCC
Confidence 43332222 11111111100000 000 0000000112223445677777777766422 12222222 34
Q ss_pred HhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCC---CCCChh----hHHH
Q 046631 411 SVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDS---GDRDQA----TWNA 483 (813)
Q Consensus 411 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~----~~~~ 483 (813)
+...+..-..++...+++.|..++....+..- .+. +|+..++.-..++-+.|.. ..|+.. ....
T Consensus 1080 p~ll~RcadFF~~~~qyekAV~lL~~ar~~~~--------Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1080 PKLLRRCADFFENNQQYEKAVNLLCLAREFSG--------ALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------HHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 44444444455556666666555544332210 111 1222222222222222321 123333 3455
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHH---------H----HHHHHHcCCCCchhH
Q 046631 484 MIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQ---------L----HGFSIRYLLDQNVFV 550 (813)
Q Consensus 484 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~---------~----~~~~~~~~~~~~~~~ 550 (813)
+...+.+.|.+..|-+-|.+.-.. ...++++.+.|+.++..- + -+.+.......++.+
T Consensus 1151 vae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~ 1221 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQT 1221 (1416)
T ss_pred HHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHH
Confidence 667778888887777666543221 123455555555443211 1 122233345556666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHh
Q 046631 551 GTSLIDMYSKSGVINYAANVFA 572 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~ 572 (813)
...++..|.|..-++.--.+|+
T Consensus 1222 mK~I~tFYTKgqafd~LanFY~ 1243 (1416)
T KOG3617|consen 1222 MKDIETFYTKGQAFDHLANFYK 1243 (1416)
T ss_pred HhhhHhhhhcchhHHHHHHHHH
Confidence 6666666666555554444444
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.80 E-value=9.7e-06 Score=85.11 Aligned_cols=295 Identities=10% Similarity=-0.018 Sum_probs=165.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCC---Ch-hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHH---HHHH
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGDR---DQ-ATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNV-VTIAS---VLPA 522 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~t~~~---ll~~ 522 (813)
+...+...|+.+++.+.+.......+ +. .........+...|++++|.+.+++..+. .|+. ..+.. ....
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~ 89 (355)
T cd05804 12 AALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGL 89 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHh
Confidence 34444445555555444444222121 11 11222234456677788888877777664 2333 23221 1111
Q ss_pred hccCCChHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHH
Q 046631 523 CNPMGNIELGKQLHGFSIRYLLDQN-VFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERA 598 (813)
Q Consensus 523 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 598 (813)
....+....+...+.. .....|+ ......+...+...|++++|.+.+++..+ .+...+..+...|...|++++|
T Consensus 90 ~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 90 GDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred cccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 2223444444444433 1122222 33444556677888888888888887763 3566778888888888999999
Q ss_pred HHHHHHHHhCCC-CCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHH-H--HHHHHHhccCCHHHHHHH
Q 046631 599 LSLFRSMKGCGI-EPDA--ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHY-C--CVADMLGRVGKVVEAYEF 672 (813)
Q Consensus 599 ~~~~~~m~~~g~-~p~~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~ 672 (813)
+.++++...... .|+. ..|..+...+...|++++|..++++........+..... + .+...+...|..+.+.++
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w 247 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW 247 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH
Confidence 998888877432 1222 235567777888899999999888875331111111111 1 233333444433322222
Q ss_pred ---HHHhCcC---CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC----C---CCchhHHHHHHHHHhcCCcHHHH
Q 046631 673 ---VKELGEE---GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR----N---SMPGYHVLLSNIYAEEGNWENVD 739 (813)
Q Consensus 673 ---~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~---~~~~~~~~l~~~~~~~g~~~~A~ 739 (813)
....... +...........++...|+.+.|...++.+....-. . .......+.+.++...|++++|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~ 327 (355)
T cd05804 248 EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATAL 327 (355)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHH
Confidence 1111111 111112235666777788898888888776542211 1 01445667788899999999999
Q ss_pred HHHHHHHHCC
Q 046631 740 KVRKEMRERG 749 (813)
Q Consensus 740 ~~~~~m~~~~ 749 (813)
+.+......+
T Consensus 328 ~~L~~al~~a 337 (355)
T cd05804 328 ELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHH
Confidence 9999888654
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=2.5e-05 Score=72.85 Aligned_cols=186 Identities=14% Similarity=0.046 Sum_probs=106.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 046631 552 TSLIDMYSKSGVINYAANVFAKIPE-----KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY 626 (813)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 626 (813)
|.-...+.+.|+.+.|.+.+-.|.. -|++|...+.-.- ..+++.+..+-+.-+...+. -...||..++-.||+
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhh
Confidence 3333446788999999999999984 3677776654332 23556666666666666543 335689999999999
Q ss_pred cCcHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHh-ccCCHHHHHHHHHHhCcCCChHHHHHHH---HHHHHHhCCH--
Q 046631 627 AGLVDEGLQIFDLMQQEYKIQ-PSTEHYCCVADMLG-RVGKVVEAYEFVKELGEEGNVLEIWGSL---LGSCRLHGHS-- 699 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~-- 699 (813)
..-++-|-.++-+-... ... .+...|+ |++++. ..-..++|++-+..+...- .+-...+ +..-+..++-
T Consensus 323 Neyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l--~~kLRklAi~vQe~r~~~dd~a 398 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML--TEKLRKLAIQVQEARHNRDDEA 398 (459)
T ss_pred hHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccHHH
Confidence 99888888776432211 000 1233343 334443 3446777776665542210 0011111 1111111111
Q ss_pred -HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 700 -ELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 700 -~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..++.-+++.+++- -......+++|....++..++++|+.-.+-
T Consensus 399 ~R~ai~~Yd~~LE~Y-----LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 399 IRKAVNEYDETLEKY-----LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 22333444444432 122455678899999999999999887653
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.72 E-value=4.2e-05 Score=72.89 Aligned_cols=342 Identities=11% Similarity=0.058 Sum_probs=223.8
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHH---HHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHh
Q 046631 381 TMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALL---SAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAK 457 (813)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (813)
-+-..+...|++..|+.-|....+. |+..|..+. ..|...|+..-|..-+..+++..++.......-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 3556667788888888888877653 344444443 346667777777777777777766555444445566778
Q ss_pred cCCHHHHHHHHhhcCCCCCChh----h----------H--HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046631 458 SGLIKTARQIFEKNDSGDRDQA----T----------W--NAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLP 521 (813)
Q Consensus 458 ~g~~~~A~~~~~~~~~~~~~~~----~----------~--~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 521 (813)
.|.++.|..-|+.+....|+.. . | ...+..+...|+...|++....+++-. +.|...|..-..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 8888888888888765555211 1 1 123445566788888888888888742 345566666677
Q ss_pred HhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHh----HHHHH---------H
Q 046631 522 ACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--KNSV----TYTTM---------I 586 (813)
Q Consensus 522 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l---------i 586 (813)
+|...|++..|+.=+....+..-. +....--+-..+...|+.+.++...++..+ ||-. .|..| +
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 778888888887766666554433 334444566777888888888888887764 3321 22221 2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhc
Q 046631 587 LGYGQHGMSERALSLFRSMKGCGIEPDAIT---FVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGR 662 (813)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 662 (813)
......++|.++++..+...+.......++ +..+-.++...|++.+|++...+.. .+.|+ +.++.--.++|.-
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhh
Confidence 334567889999999998888433322333 3444456677889999999888887 67886 9999999999999
Q ss_pred cCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHH
Q 046631 663 VGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVR 742 (813)
Q Consensus 663 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 742 (813)
...+++|+.-|+...+....- ....++++-.+++.+..-. ..+|-+|+ -.+.-+..+..+.|
T Consensus 354 dE~YD~AI~dye~A~e~n~sn-------------~~~reGle~Akrlkkqs~k---RDYYKILG--VkRnAsKqEI~KAY 415 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESN-------------TRAREGLERAKRLKKQSGK---RDYYKILG--VKRNASKQEITKAY 415 (504)
T ss_pred hHHHHHHHHHHHHHHhcCccc-------------HHHHHHHHHHHHHHHHhcc---chHHHHhh--hcccccHHHHHHHH
Confidence 999999999998875433221 1123344444444443333 34565553 23444556777777
Q ss_pred HHHHHCC
Q 046631 743 KEMRERG 749 (813)
Q Consensus 743 ~~m~~~~ 749 (813)
++|.++.
T Consensus 416 RKlAqkW 422 (504)
T KOG0624|consen 416 RKLAQKW 422 (504)
T ss_pred HHHHHhc
Confidence 7777553
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=6.7e-07 Score=91.18 Aligned_cols=224 Identities=15% Similarity=0.104 Sum_probs=152.4
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHH
Q 046631 454 MYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELG 532 (813)
Q Consensus 454 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 532 (813)
-+.+.|++.+|.-.|+.....+| +...|--|......+++-..|+..+++..+. .|+...
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~Nle----------------- 354 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLE----------------- 354 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHH-----------------
Confidence 35567777777777777655566 6667887777777777777777777776663 454322
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-
Q 046631 533 KQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIE- 611 (813)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~- 611 (813)
+..+|.-.|...|.-..|.+.+ +.-+....+
T Consensus 355 -----------------aLmaLAVSytNeg~q~~Al~~L-------------------------------~~Wi~~~p~y 386 (579)
T KOG1125|consen 355 -----------------ALMALAVSYTNEGLQNQALKML-------------------------------DKWIRNKPKY 386 (579)
T ss_pred -----------------HHHHHHHHHhhhhhHHHHHHHH-------------------------------HHHHHhCccc
Confidence 2223333344444433444333 332221000
Q ss_pred -------CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChH
Q 046631 612 -------PDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVL 683 (813)
Q Consensus 612 -------p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~ 683 (813)
++..+-.. ..+.....+....++|-++....+..+|+.++.+|+-+|.-.|.+++|++-|+.+ ..+|+..
T Consensus 387 ~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~ 464 (579)
T KOG1125|consen 387 VHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY 464 (579)
T ss_pred hhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH
Confidence 00000000 1112222334455666666655466678899999999999999999999999986 6778777
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 684 EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..||.|+..+....+.++|+..|.+++++.|.- .....-|+-.|...|.++||.+.|-.....
T Consensus 465 ~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y--VR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 465 LLWNRLGATLANGNRSEEAISAYNRALQLQPGY--VRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe--eeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 799999999998889999999999999999998 677778888999999999999988777654
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=7.8e-07 Score=87.97 Aligned_cols=192 Identities=16% Similarity=0.111 Sum_probs=130.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 046631 546 QNVFVGTSLIDMYSKSGVINYAANVFAKIP-EK----NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAV 620 (813)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 620 (813)
|.......+...+...++-+.+..-+++.. ++ +....-.....+...|++++|++++++. .+.......
T Consensus 64 ~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~ 137 (290)
T PF04733_consen 64 PELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALA 137 (290)
T ss_dssp CCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHH
T ss_pred hhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHH
Confidence 333333334333333345555655555443 22 2222222234556679999999988652 345566777
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCChh---HHHHHHHHHhccCCHHHHHHHHHHhCcC-CChHHHHHHHHHHHHHh
Q 046631 621 LSACSYAGLVDEGLQIFDLMQQEYKIQPSTE---HYCCVADMLGRVGKVVEAYEFVKELGEE-GNVLEIWGSLLGSCRLH 696 (813)
Q Consensus 621 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 696 (813)
+..+.+.++++.|.+.++.|. .+..|.. .....+..+.-.+.+.+|.-+|+++... +..+.+.+.+..+....
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 888999999999999999997 4555622 2223334433345799999999999655 45555889999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCc-HHHHHHHHHHHHC
Q 046631 697 GHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNW-ENVDKVRKEMRER 748 (813)
Q Consensus 697 g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 748 (813)
|++++|+.+++++++.+|.+ +.+...++-+....|+. +.+.+++.+++..
T Consensus 215 ~~~~eAe~~L~~al~~~~~~--~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKDPND--PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp T-HHHHHHHHHHHCCC-CCH--HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999998 88888887778888888 6778888888853
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.71 E-value=1.6e-06 Score=80.93 Aligned_cols=147 Identities=11% Similarity=0.116 Sum_probs=115.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccC
Q 046631 586 ILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVG 664 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 664 (813)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. .| +...|..++..|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCC
Confidence 4567777887776444333221 11 0122366677777777777643 67 4999999999999999
Q ss_pred CHHHHHHHHHHh-CcCCChHHHHHHHHHHH-HHhCC--HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHH
Q 046631 665 KVVEAYEFVKEL-GEEGNVLEIWGSLLGSC-RLHGH--SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDK 740 (813)
Q Consensus 665 ~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 740 (813)
++++|...+++. ...|+.+.++..+..++ ...|+ .++|..+++++++.+|++ +..+..++..+.+.|++++|..
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~--~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE--VTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHcCCHHHHHH
Confidence 999999999987 56777777898888874 66676 599999999999999999 9999999999999999999999
Q ss_pred HHHHHHHCC
Q 046631 741 VRKEMRERG 749 (813)
Q Consensus 741 ~~~~m~~~~ 749 (813)
.|+++.+..
T Consensus 166 ~~~~aL~l~ 174 (198)
T PRK10370 166 LWQKVLDLN 174 (198)
T ss_pred HHHHHHhhC
Confidence 999998654
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.70 E-value=4e-07 Score=80.18 Aligned_cols=122 Identities=13% Similarity=0.084 Sum_probs=96.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-
Q 046631 599 LSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL- 676 (813)
Q Consensus 599 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 676 (813)
..++++.++ +.|+. +..+..++...|++++|...|+... .+.|+ ...|..++.++.+.|++++|+..|++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345666665 45554 4456667788899999999888887 45674 888888899999999999999988886
Q ss_pred CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 677 GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 677 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
...|+.+..|..++.++...|+.++|+..++++++..|++ +.++...+++.
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~--~~~~~~~~~~~ 136 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD--ASWSEIRQNAQ 136 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHH
Confidence 5567677788888889999999999999999999999988 88877776654
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.68 E-value=2.4e-06 Score=83.52 Aligned_cols=181 Identities=10% Similarity=-0.042 Sum_probs=109.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-H---hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----H
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIPE--KN-S---VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI----T 616 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~ 616 (813)
....+..+...+.+.|++++|...|+++.. |+ . .++..+..++...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344555566666667777777776665542 21 1 34555666666667777777777766663 22211 2
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHH
Q 046631 617 FVAVLSACSYA--------GLVDEGLQIFDLMQQEYKIQPST-EHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWG 687 (813)
Q Consensus 617 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 687 (813)
+..+..++... |+.++|.+.++.+.+. .|+. ..+..+..... .... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~------------~~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNR------------LAGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHH------------HHHHHH
Confidence 33333344333 5566666666666643 3432 22211111100 0000 000123
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRN-SMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.+...+...|++++|...++++++..|+. ..+..+..++.+|.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55667888999999999999999987764 12467889999999999999999999988754
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=9.7e-07 Score=90.05 Aligned_cols=212 Identities=13% Similarity=0.106 Sum_probs=135.2
Q ss_pred cCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHH
Q 046631 423 NLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAF 501 (813)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~ 501 (813)
+.|++..|.-.|+..++.++..-..+..|.......++-..|+..+++..+.+| |.....+|.-.|...|.-..|+..+
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred hcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 445555555555555555555555556666666666777777777777666666 6667777777888888888888887
Q ss_pred HHHHHCCCCCCHHHHHHHH-----------HHhccCCChHHHHHHHHH-HHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046631 502 RQMLEHNVTPNVVTIASVL-----------PACNPMGNIELGKQLHGF-SIRYLLDQNVFVGTSLIDMYSKSGVINYAAN 569 (813)
Q Consensus 502 ~~m~~~~~~p~~~t~~~ll-----------~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 569 (813)
+.-+... |.. ..+. ........+....++|-. ....+..+|+.++..|.-.|--.|++++|.+
T Consensus 377 ~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 377 DKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 7765432 110 0000 011111122333444433 3344655777778888878888888888888
Q ss_pred HHhhCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHH
Q 046631 570 VFAKIP--EK-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQ 641 (813)
Q Consensus 570 ~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~ 641 (813)
.|+.+. +| |...||-|...++...+.++|+..|++.++ ++|.-+ ....|.-+|...|.+++|...|-..+
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 888766 33 677788888888877788888888888777 667654 44455556777777777777766554
No 106
>PLN02789 farnesyltranstransferase
Probab=98.66 E-value=9.3e-06 Score=81.48 Aligned_cols=224 Identities=12% Similarity=0.044 Sum_probs=148.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046631 481 WNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSK 560 (813)
Q Consensus 481 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 560 (813)
+..+-..+...++.++|+.++.++++. .|+..| +|+....++.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~yt----------------------------------aW~~R~~iL~~ 83 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYT----------------------------------VWHFRRLCLEA 83 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHH----------------------------------HHHHHHHHHHH
Confidence 344444555666777777777777763 454433 22222333334
Q ss_pred cC-CHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCCh--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046631 561 SG-VINYAANVFAKIPE---KNSVTYTTMILGYGQHGMS--ERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGL 634 (813)
Q Consensus 561 ~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~ 634 (813)
.| .+++++..++++.+ ++..+|+.....+.+.|+. ++++.+++++++.. .-+...|.....++...|++++++
T Consensus 84 L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 84 LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHH
Confidence 44 45677777666552 3455666555555555553 67788888888743 234457777777778888888999
Q ss_pred HHHHHHHHhcCCCC-ChhHHHHHHHHHhcc---CC----HHHHHHHH-HHhCcCCChHHHHHHHHHHHHHh----CCHHH
Q 046631 635 QIFDLMQQEYKIQP-STEHYCCVADMLGRV---GK----VVEAYEFV-KELGEEGNVLEIWGSLLGSCRLH----GHSEL 701 (813)
Q Consensus 635 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~----~~~A~~~~-~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 701 (813)
+.++++++. .| +..+|+....++.+. |. .++++++. +.+...|+...+|+.+...+... ++..+
T Consensus 163 ~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 163 EYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred HHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchh
Confidence 988888854 45 466677666666554 22 34667776 45577887777999999999874 34567
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHhcC------------------CcHHHHHHHHHHH
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEG------------------NWENVDKVRKEMR 746 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 746 (813)
+...+.++++.+|.. +..+..|+++|+... ..++|.++++.+.
T Consensus 240 ~~~~~~~~~~~~~~s--~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 240 VSSVCLEVLSKDSNH--VFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHHHHhhcccCCc--HHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 889999999988887 888899999998642 2356777777763
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.64 E-value=6.7e-05 Score=78.73 Aligned_cols=196 Identities=12% Similarity=0.036 Sum_probs=97.9
Q ss_pred cchHHHHHHHHHHCCCcHHHHHHHHHHHHCCC-CCCHhHHHH-HHHHHhcCCChHHHHHHHHHHHHhCCCCcchHH---H
Q 046631 376 VVSWNTMISAFVQNGLDDEGLMLVYEMQKQGF-MIDSVTVTA-LLSAASNLRNQDVGKQTHAYLLRHGIHFEGMES---Y 450 (813)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~ 450 (813)
...|..+...+...|+.+.+.+.+....+... .++...... ....+...|+++.+..+++.+.+..+....... .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~ 85 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHH
Confidence 34566666777777888887666666554321 223222211 122344567777777777776666544332222 1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCCh
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGDRD-QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNI 529 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 529 (813)
+.......+..+.+.+.++......|+ ......+...+...|++++|...+++..+.. |+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~----------------- 146 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PD----------------- 146 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-----------------
Confidence 111112234444455544443222232 2233344455666666666666666666542 32
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC--HhHHHHHHHHHHhcCChHHHHHHH
Q 046631 530 ELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE-----KN--SVTYTTMILGYGQHGMSERALSLF 602 (813)
Q Consensus 530 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~li~~~~~~g~~~~A~~~~ 602 (813)
+...+..+...|...|++++|...+++..+ ++ ...|..+...+...|++++|+.++
T Consensus 147 -----------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 147 -----------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred -----------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 223344445555555555555555554432 11 123444555566666666666666
Q ss_pred HHHHh
Q 046631 603 RSMKG 607 (813)
Q Consensus 603 ~~m~~ 607 (813)
++...
T Consensus 210 ~~~~~ 214 (355)
T cd05804 210 DTHIA 214 (355)
T ss_pred HHHhc
Confidence 66543
No 108
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.60 E-value=0.00083 Score=68.54 Aligned_cols=172 Identities=11% Similarity=0.090 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHH
Q 046631 494 LEEAFVAFRQMLEHN-VTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQ-NVFVGTSLIDMYSKSGVINYAANVF 571 (813)
Q Consensus 494 ~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 571 (813)
.+...+.++++...- ..|+ .+|...++...+..-+..|..+|.++.+.+..+ ++.+++++++.|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 455556666655432 2333 456667777777777777788888777776655 6777777777665 45667777777
Q ss_pred hhCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHHhcC-
Q 046631 572 AKIPE--K-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI--TFVAVLSACSYAGLVDEGLQIFDLMQQEYK- 645 (813)
Q Consensus 572 ~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~- 645 (813)
+--.+ + +..--...+.-+...++-..|..+|++.+..++.|+.. .|..+|.--+.-|++..+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 65432 2 33334455666666777777777777777765555543 677777766777777777777666665543
Q ss_pred -CCCChhHHHHHHHHHhccCCHH
Q 046631 646 -IQPSTEHYCCVADMLGRVGKVV 667 (813)
Q Consensus 646 -~~p~~~~~~~l~~~~~~~g~~~ 667 (813)
..|....-..+++.|.=.+.+.
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccc
Confidence 3333334444555555444433
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.58 E-value=2.1e-06 Score=75.63 Aligned_cols=108 Identities=12% Similarity=-0.025 Sum_probs=94.2
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 046631 635 QIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMD 713 (813)
Q Consensus 635 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 713 (813)
.++++.. .+.|+. +..++..+...|++++|...++.. ...|....+|..++.++...|++++|...++++++++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455555 345653 556889999999999999999986 5677777799999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 714 TRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 714 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
|++ +..+..++.++...|+.++|...+++..+..
T Consensus 89 p~~--~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASH--PEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCC--cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999 9999999999999999999999999998653
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.55 E-value=7.7e-05 Score=89.15 Aligned_cols=328 Identities=10% Similarity=0.013 Sum_probs=189.1
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHHHHhhcCCC----C----CCh--hhHHHHHHHHHh
Q 046631 422 SNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSG----D----RDQ--ATWNAMIAGYTQ 490 (813)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~~--~~~~~li~~~~~ 490 (813)
...|+.+.+...+..+.......+ .........+...|++++|...+...... . +.. .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 345566555555544321111111 23334455556778888887777653211 1 111 112223344567
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhccCCChHHHHHHHHHHHHc----CC-CCchhHHHHHHHHHHhc
Q 046631 491 NGLLEEAFVAFRQMLEHNVTPNV----VTIASVLPACNPMGNIELGKQLHGFSIRY----LL-DQNVFVGTSLIDMYSKS 561 (813)
Q Consensus 491 ~~~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~ 561 (813)
.|++++|...+++....-...+. ...+.+...+...|+++.|...+...... |- ......+..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 88888888888877653111121 23344445566788888888887766643 11 11123445566677788
Q ss_pred CCHHHHHHHHhhCCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHhc
Q 046631 562 GVINYAANVFAKIPE-------K----NSVTYTTMILGYGQHGMSERALSLFRSMKGCG--IEPD--AITFVAVLSACSY 626 (813)
Q Consensus 562 g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~~~~~ll~a~~~ 626 (813)
|++++|...+++... + ....+..+...+...|++++|...+++..... ..+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 888888887766441 1 12234455566677788988888888775531 1122 2234445556677
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCChhHH-----HHHHHHHhccCCHHHHHHHHHHhCcCC--Ch---HHHHHHHHHHHHHh
Q 046631 627 AGLVDEGLQIFDLMQQEYKIQPSTEHY-----CCVADMLGRVGKVVEAYEFVKELGEEG--NV---LEIWGSLLGSCRLH 696 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---~~~~~~l~~~~~~~ 696 (813)
.|+.++|...+..+............+ ......+...|+.+.|..++....... .. ...+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 888888888887775431111111111 112244456788888888877653211 11 11245666777788
Q ss_pred CCHHHHHHHHHHHhcCCCCC----CCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 697 GHSELAEVVAKKLLEMDTRN----SMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 697 g~~~~a~~~~~~~~~~~p~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
|+.++|...++++++..... .....+..++.+|...|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888877642111 013356677888889999999999888887654
No 111
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=2.4e-05 Score=73.04 Aligned_cols=177 Identities=12% Similarity=0.081 Sum_probs=86.5
Q ss_pred cCCHHHHHHHHhhCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 046631 561 SGVINYAANVFAKIP-EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDL 639 (813)
Q Consensus 561 ~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 639 (813)
.+++..+..+.+... +.+..+.+...-...+.|+++.|++-|+...+-+---....|+..+ +..+.|+.+.|+++..+
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISE 203 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 344444555555444 2333344444444445555555555555554432222233343333 22344555555555555
Q ss_pred HHHhcCCC-------------CC---------------hhHHHHHHHHHhccCCHHHHHHHHHHhCcCC----ChHHHHH
Q 046631 640 MQQEYKIQ-------------PS---------------TEHYCCVADMLGRVGKVVEAYEFVKELGEEG----NVLEIWG 687 (813)
Q Consensus 640 ~~~~~~~~-------------p~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~ 687 (813)
++++ |++ || +..+|.-..++.+.|+++.|.+.+..|+-+. +.. +..
T Consensus 204 IieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv-TLH 281 (459)
T KOG4340|consen 204 IIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV-TLH 281 (459)
T ss_pred HHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch-hhh
Confidence 5544 321 11 1123333344556777777777777774222 222 222
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRK 743 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 743 (813)
.+.- -...++...+.+-+.-+++++|-+ +.++..+.-+|++..-++-|..++-
T Consensus 282 N~Al-~n~~~~p~~g~~KLqFLL~~nPfP--~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 282 NQAL-MNMDARPTEGFEKLQFLLQQNPFP--PETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHH-hcccCCccccHHHHHHHHhcCCCC--hHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 2211 112345555555566666677665 6666666667777766666666553
No 112
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.52 E-value=3.3e-06 Score=72.60 Aligned_cols=101 Identities=15% Similarity=0.051 Sum_probs=90.8
Q ss_pred CCC-CC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchh
Q 046631 645 KIQ-PS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGY 721 (813)
Q Consensus 645 ~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 721 (813)
++. ++ ....-.+...+...|++++|..+|+-+ ...|...+.|..|+.+|...|++++|+..|.++..++|++ |..
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd--p~~ 105 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA--PQA 105 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--chH
Confidence 455 43 555667788889999999999999987 5678888899999999999999999999999999999999 999
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 722 HVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 722 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+..++.+|...|+.+.|++-|+....
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999884
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.51 E-value=1.2e-05 Score=89.09 Aligned_cols=135 Identities=14% Similarity=0.101 Sum_probs=114.7
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHH
Q 046631 577 KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYC 654 (813)
Q Consensus 577 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 654 (813)
.++..+-.|.....+.|++++|..+++...+ +.||.. ....++..+.+.+++++|...+++.. ...|+ ...+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHH
Confidence 3577888888999999999999999999998 678766 66777888899999999999988887 44786 78888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhC-cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 655 CVADMLGRVGKVVEAYEFVKELG-EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 655 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.+..++.+.|++++|..+|+++. ..|+...+|..+..++...|+.++|...|+++++....-
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 89999999999999999999985 556667789999999999999999999999998876554
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.50 E-value=1.3e-05 Score=89.95 Aligned_cols=201 Identities=13% Similarity=0.104 Sum_probs=163.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 046631 546 QNVFVGTSLIDMYSKSGVINYAANVFAKIPEK--------NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITF 617 (813)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 617 (813)
.+...|-..|......+++++|.++++++... -...|.++++.-...|.-+...++|+++.+ ..-....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHH
Confidence 34556777788888889999999999887631 356888888888888888889999999987 33334578
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCC--ChHHHHHHHHHHHH
Q 046631 618 VAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEG--NVLEIWGSLLGSCR 694 (813)
Q Consensus 618 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~--~~~~~~~~l~~~~~ 694 (813)
..|...|.+.+.+++|.++++.|.++|+ -....|..+++.+.+..+-+.|..+++++ ..-| .-..+....+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8889999999999999999999999876 45778889999999999999999988875 2222 23336666677778
Q ss_pred HhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCcc
Q 046631 695 LHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRK 752 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 752 (813)
++||.+++..+|+..+...|.- ...|..+++.-.+.|..+.++.+|++....++.+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKR--tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKR--TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccc--hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 8899999999999999999987 7788888888889999999999999999877653
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=1e-05 Score=79.01 Aligned_cols=183 Identities=14% Similarity=-0.019 Sum_probs=129.8
Q ss_pred CCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHh---HH
Q 046631 511 PNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLD-Q-NVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSV---TY 582 (813)
Q Consensus 511 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~ 582 (813)
.....+......+...|+++.|...++.+...... + ....+..+..+|.+.|++++|...++++.+ | +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777888899999999999999998775421 2 224677888999999999999999999863 3 222 46
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHH
Q 046631 583 TTMILGYGQH--------GMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHY 653 (813)
Q Consensus 583 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 653 (813)
..+..++... |++++|++.|+++... .|+.. .+..+..... .. ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~-------~~~--------~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR-------NRL--------AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH-------HHH--------HHHH
Confidence 6666666654 7889999999999984 56543 2222211100 00 000 0112
Q ss_pred HHHHHHHhccCCHHHHHHHHHHh----CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 046631 654 CCVADMLGRVGKVVEAYEFVKEL----GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 654 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 714 (813)
..+...|.+.|++++|+..+++. +..|..+.+|..++.++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35677889999999999988886 33455566899999999999999999998888776655
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=3.5e-05 Score=86.57 Aligned_cols=221 Identities=13% Similarity=0.080 Sum_probs=171.6
Q ss_pred CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHh-CCCCc----chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHH
Q 046631 409 IDSVTVTALLSAASNLRNQDVGKQTHAYLLRH-GIHFE----GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNA 483 (813)
Q Consensus 409 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 483 (813)
-.+..|...|......++.+.|+++.+++++. ++... .++.+++++-..-|.-+...++|++..+..-....|..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLK 1535 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHH
Confidence 34457777888888888888888888887764 33222 67788888888888888899999988754444557888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcC
Q 046631 484 MIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYL-LDQNVFVGTSLIDMYSKSG 562 (813)
Q Consensus 484 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g 562 (813)
|...|.+.+++++|-++|+.|.+. ..-....|...+..+.+..+-+.|..++.+..+.- -...+....-.+++-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 999999999999999999999885 34566778888888888888889999888877652 2234556667777888999
Q ss_pred CHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCcH
Q 046631 563 VINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI--TFVAVLSACSYAGLV 630 (813)
Q Consensus 563 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~g~~ 630 (813)
+.+++..+|+.... +-...|+.+|..-.++|+.+.+..+|++.+..++.|-.. .|...+..--..|+-
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 99999999998773 367789999999999999999999999999988777653 555555544445553
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=1.5e-05 Score=74.39 Aligned_cols=150 Identities=11% Similarity=0.165 Sum_probs=117.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046631 555 IDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGL 634 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~ 634 (813)
+..|...|+++......+.+..+. ..+...++.++++..+++..+.+ +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456788888877655544332221 01123566788888888888743 455668888888999999999999
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHHHHH-hccCC--HHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 046631 635 QIFDLMQQEYKIQPS-TEHYCCVADML-GRVGK--VVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKL 709 (813)
Q Consensus 635 ~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 709 (813)
..|++.. .+.|+ ...+..++.++ ...|+ .++|.+++++. ..+|+.+.++..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999888 45784 88888888874 67777 59999999987 567777779999999999999999999999999
Q ss_pred hcCCCCC
Q 046631 710 LEMDTRN 716 (813)
Q Consensus 710 ~~~~p~~ 716 (813)
+++.|.+
T Consensus 171 L~l~~~~ 177 (198)
T PRK10370 171 LDLNSPR 177 (198)
T ss_pred HhhCCCC
Confidence 9999887
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=8.8e-06 Score=85.48 Aligned_cols=214 Identities=11% Similarity=-0.002 Sum_probs=158.8
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCHhHHHHHHHHHHhc
Q 046631 515 TIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--EKNSVTYTTMILGYGQH 592 (813)
Q Consensus 515 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~ 592 (813)
.-..+...+...|-...|..+++.+. .+.-+|.+|+..|+..+|..+...-. +||...|..+.+.....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccCh
Confidence 33444555566677777777776554 36677888888888888888776544 45777788777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHH
Q 046631 593 GMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYE 671 (813)
Q Consensus 593 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 671 (813)
--+++|.++++..-.. .-..+.......+++.++.+.|+.-. .+.| -..+|-.++.+..+.++++.|.+
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 7778888887764432 11111222234688888888887766 4566 37888888889999999999988
Q ss_pred HHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 672 FVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 672 ~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
.|... ..+|+....||++-.+|.+.++-.+|...++++++-+-++ ...+....-+..+.|.|++|.+.+.++.+..
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~--w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH--WQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC--CeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 88775 6788888899999999999999999999999999888666 5555555567788999999999998887653
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=9.4e-06 Score=85.28 Aligned_cols=212 Identities=17% Similarity=0.105 Sum_probs=174.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 046631 446 GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNP 525 (813)
Q Consensus 446 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 525 (813)
.+...+...+.+.|-...|..+|+++. .|...|.+|+..|+..+|..+..+-.+ -+||..-|..+.....+
T Consensus 399 q~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence 566788999999999999999999988 788899999999999999999888777 37899999988888887
Q ss_pred CCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CHhHHHHHHHHHHhcCChHHHHHHH
Q 046631 526 MGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK---NSVTYTTMILGYGQHGMSERALSLF 602 (813)
Q Consensus 526 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 602 (813)
..-++.|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|-.+..+..+.++++.|.+.|
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 77788888887754332 1222222334578999999999865532 4678888888899999999999999
Q ss_pred HHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhC
Q 046631 603 RSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELG 677 (813)
Q Consensus 603 ~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 677 (813)
..-.. ..||.. .|+.+-.+|.+.|+-.+|...+.+..+- + .-+...|...+-...+.|.+++|++.+.++.
T Consensus 543 ~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 543 HRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 99888 678765 7999999999999999999999999865 4 3346667777888889999999999998873
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.42 E-value=3.9e-07 Score=56.50 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=24.4
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046631 543 LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP 575 (813)
Q Consensus 543 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (813)
|+.||..+|++||++|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00034 Score=64.86 Aligned_cols=251 Identities=14% Similarity=0.053 Sum_probs=150.7
Q ss_pred HHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHH-
Q 046631 455 YAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGK- 533 (813)
Q Consensus 455 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~- 533 (813)
|.-.|.+..++..-........++..---+-.+|...|.+...+. +.... -.|....+..+.......++.+.-.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchhHHHHH
Confidence 333455555554444433222223333334455555555433222 11111 1333333333333333334333322
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 046631 534 QLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD 613 (813)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 613 (813)
.+.+.+.......+......-...|++.|++++|++.......-+... .=+..+.+..+.+-|.+.+++|.+ --+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~A--l~VqI~lk~~r~d~A~~~lk~mq~---ide 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAA--LNVQILLKMHRFDLAEKELKKMQQ---IDE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHc---cch
Confidence 234444444434443333444456888999999999888743323333 234455677788999999999987 234
Q ss_pred HHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHH
Q 046631 614 AITFVAVLSACSY----AGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGS 688 (813)
Q Consensus 614 ~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~ 688 (813)
..|.+.|..++.+ .+.+.+|.-+|++|.+ +..|+..+.+....+....|++++|..+++.. ...+..+++...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 5677777777654 4568899999999985 35788888888888999999999999998886 444566667766
Q ss_pred HHHHHHHhCC-HHHHHHHHHHHhcCCCCC
Q 046631 689 LLGSCRLHGH-SELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 689 l~~~~~~~g~-~~~a~~~~~~~~~~~p~~ 716 (813)
++-.-...|. .+--.+...++....|..
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 6666666664 455566777777777775
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.41 E-value=4.7e-06 Score=73.21 Aligned_cols=108 Identities=17% Similarity=0.109 Sum_probs=88.0
Q ss_pred HHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 046631 636 IFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMD 713 (813)
Q Consensus 636 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 713 (813)
.++.+. ...|+ ......++..+...|++++|.+.++.+ ...|..+..|..+...+...|++++|...++++++.+
T Consensus 5 ~~~~~l---~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLL---GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHH---cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444 44664 566777888888889999999888886 4466666688888999988999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 714 TRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 714 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
|.+ +..+..++.+|...|++++|...+++..+.
T Consensus 82 p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDD--PRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888 888888999999999999999999888854
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=4.7e-05 Score=70.52 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=97.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 046631 583 TTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLG 661 (813)
Q Consensus 583 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 661 (813)
..+-..+...|+-+....+..+.... ..-|......++....+.|++.+|...+++.. ...| |...|+.++-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~---~l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA---RLAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh---ccCCCChhhhhHHHHHHH
Confidence 44455566666666666666554431 12233344446666667777777777777666 2344 4777777777777
Q ss_pred ccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHH
Q 046631 662 RVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDK 740 (813)
Q Consensus 662 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 740 (813)
+.|++++|..-|.+. ...|+.+.+.+.|+..+.-.||.+.|+.++..+....+.+ ...-..++.+....|++++|..
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad--~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD--SRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHhhcCChHHHHh
Confidence 777777777665554 4555555566777777777777777777777776666666 5666666666777777777766
Q ss_pred HHH
Q 046631 741 VRK 743 (813)
Q Consensus 741 ~~~ 743 (813)
+..
T Consensus 224 i~~ 226 (257)
T COG5010 224 IAV 226 (257)
T ss_pred hcc
Confidence 653
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.40 E-value=9.3e-05 Score=82.19 Aligned_cols=129 Identities=12% Similarity=0.096 Sum_probs=110.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHH
Q 046631 543 LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--EK-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI-TFV 618 (813)
Q Consensus 543 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~ 618 (813)
.+..+...+-.|.....+.|.+++|..+++... .| +...+..++..+.+.+++++|+..+++... ..|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 345568888899999999999999999999887 34 567888899999999999999999999998 567665 555
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 619 AVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 619 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
.+..++.+.|.+++|..+|+++... .|+ ..++..++.++.+.|+.++|...|++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666888999999999999999863 565 888999999999999999999999987
No 125
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.39 E-value=0.00076 Score=80.69 Aligned_cols=368 Identities=10% Similarity=-0.048 Sum_probs=193.1
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcch--HHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcch
Q 046631 270 IFMYAELGCFDFARKIFDNCLERNTEV--WNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELD 347 (813)
Q Consensus 270 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 347 (813)
...+...|++.+|..........+... ...........|++..+...+ ..+.......+..........+...|+.+
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l-~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECL-NALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHH-HhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 334555566666666555543332111 111223345567777776666 44422111112222233344445678888
Q ss_pred HHHHHHHHHHHhcccchhhhhccCCCCC--cchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCH----hHHHHHHHHH
Q 046631 348 LGQQLHAYIIKNFVALPVIVLNAVIERD--VVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDS----VTVTALLSAA 421 (813)
Q Consensus 348 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~~ 421 (813)
++..++..+.......+.. ..+. ......+...+...|++++|...+++..+.--..+. .....+...+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIE-----LDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred HHHHHHHHHHHhccccCcc-----cchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 8888887775522111000 0011 111222334556889999999999988763111121 2334444556
Q ss_pred hcCCChHHHHHHHHHHHHhCCC----Cc--chHHHHHHHHHhcCCHHHHHHHHhhcCCC-----C---C-ChhhHHHHHH
Q 046631 422 SNLRNQDVGKQTHAYLLRHGIH----FE--GMESYLIDMYAKSGLIKTARQIFEKNDSG-----D---R-DQATWNAMIA 486 (813)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~~----~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~-~~~~~~~li~ 486 (813)
...|+++.|...+......... .. .....+...+...|++++|...+++.... . + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 6788888888888777653221 11 23345566777788888888877653211 1 1 1223444555
Q ss_pred HHHhCCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhccCCChHHHHHHHHHHHHcCC--CCchh--H--HHHHHH
Q 046631 487 GYTQNGLLEEAFVAFRQMLEH--NVTPN--VVTIASVLPACNPMGNIELGKQLHGFSIRYLL--DQNVF--V--GTSLID 556 (813)
Q Consensus 487 ~~~~~~~~~~A~~~~~~m~~~--~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~--~--~~~li~ 556 (813)
.+...|++++|...+.+.... ...+. ...+..+.......|+.+.|...+.......- ..... . ....+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 666778888888887776542 11121 22333344455667777777777766644210 00000 0 011123
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC---H----hHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHH
Q 046631 557 MYSKSGVINYAANVFAKIPEKN---S----VTYTTMILGYGQHGMSERALSLFRSMKGC----GIEPDA-ITFVAVLSAC 624 (813)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~---~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~ll~a~ 624 (813)
.+...|+.+.|.+.+.....+. . ..+..+..++...|++++|...+++.... |..++. .+...+..++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 3445677777777766554321 0 11234555566667777777777666542 222221 2344445566
Q ss_pred hccCcHHHHHHHHHHHHHh
Q 046631 625 SYAGLVDEGLQIFDLMQQE 643 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~ 643 (813)
...|+.++|...+.+..+.
T Consensus 742 ~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6677777777776666644
No 126
>PF12854 PPR_1: PPR repeat
Probab=98.37 E-value=5.2e-07 Score=55.95 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=14.5
Q ss_pred CCCCChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 645 KIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 645 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
|+.||..+|+.|+++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 127
>PLN02789 farnesyltranstransferase
Probab=98.32 E-value=8.1e-05 Score=74.80 Aligned_cols=191 Identities=12% Similarity=0.077 Sum_probs=143.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 046631 553 SLIDMYSKSGVINYAANVFAKIPE--K-NSVTYTTMILGYGQHG-MSERALSLFRSMKGCGIEPDAITFVAVLSACSYAG 628 (813)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 628 (813)
.+-..+...+..++|+.+..++.+ | +..+|+.-...+...| ++++++..++++.+.+. .+..+|+.-...+.+.|
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcC
Confidence 344445667788899999888773 3 5567777777777777 67999999999998542 23335665544555566
Q ss_pred c--HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh---CCH--
Q 046631 629 L--VDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH---GHS-- 699 (813)
Q Consensus 629 ~--~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~---g~~-- 699 (813)
. .+++..+++++. .+.| +..+|.....++.+.|++++|++.++++ ..++....+|+.....+.+. |..
T Consensus 121 ~~~~~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 121 PDAANKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred chhhHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccc
Confidence 5 367888888888 4467 4889999999999999999999999997 45566666899888777654 222
Q ss_pred --HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhc----CCcHHHHHHHHHHHHCC
Q 046631 700 --ELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEE----GNWENVDKVRKEMRERG 749 (813)
Q Consensus 700 --~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~ 749 (813)
+..+....+++..+|++ .+.+..++.++... ++..+|.+...+..+.+
T Consensus 198 ~~e~el~y~~~aI~~~P~N--~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 198 MRDSELKYTIDAILANPRN--ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred cHHHHHHHHHHHHHhCCCC--cCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 46778888999999999 89999999999873 45577888888776543
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=0.00019 Score=72.58 Aligned_cols=145 Identities=17% Similarity=0.117 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVA-VLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVAD 658 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 658 (813)
.+.-..-.+...|++++|+..++.++. -.|+...|.. ....+...++.++|.+.++++. ...|+ ......+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHH
Confidence 333334445567899999999999888 4566655554 4457889999999999999998 45787 666778899
Q ss_pred HHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHH
Q 046631 659 MLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWEN 737 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 737 (813)
+|.+.|+..+|+..++.. ...|+.+..|..|..+|...|+..++... .+..|+..|+|++
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-------------------~AE~~~~~G~~~~ 443 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-------------------RAEGYALAGRLEQ 443 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-------------------HHHHHHhCCCHHH
Confidence 999999999999998886 56677888999999999999987776554 3457888899999
Q ss_pred HHHHHHHHHHCC
Q 046631 738 VDKVRKEMRERG 749 (813)
Q Consensus 738 A~~~~~~m~~~~ 749 (813)
|.......++..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999998888653
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.30 E-value=5e-05 Score=70.36 Aligned_cols=155 Identities=16% Similarity=0.066 Sum_probs=116.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 046631 552 TSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAG 628 (813)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 628 (813)
..+-..+.-.|+-+....+..... ..|....+.++....+.|++..|+..+++.... -++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 334445555666666666665543 235556666888888889999999999988874 3566678888888899999
Q ss_pred cHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCCC-hHHHHHHHHHHHHHhCCHHHHHHHH
Q 046631 629 LVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEGN-VLEIWGSLLGSCRLHGHSELAEVVA 706 (813)
Q Consensus 629 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 706 (813)
++++|..-|.+.. .+.|+ ...++.|+..|.-.|+++.|..++......|. ...+-..|.-.....|++++|+.+.
T Consensus 149 r~~~Ar~ay~qAl---~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQAL---ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHH---HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999998888887 44664 77788888889999999999998888765553 3337788888888889999988876
Q ss_pred HHHh
Q 046631 707 KKLL 710 (813)
Q Consensus 707 ~~~~ 710 (813)
.+-+
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6543
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.00047 Score=69.82 Aligned_cols=177 Identities=21% Similarity=0.130 Sum_probs=131.1
Q ss_pred CHHHHHHHHhhCCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 046631 563 VINYAANVFAKIPE------KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQI 636 (813)
Q Consensus 563 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~ 636 (813)
++.++...-+.+.. ++...+...+.+.........+-.++-+-.+. .-...-|..-+ .+...|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 45555555555552 34555555555544433333333333222221 11122233333 45678999999999
Q ss_pred HHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 046631 637 FDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 637 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 714 (813)
++.+.+. .|+ +......++.+.+.++.++|.+.++++ ...|+.+..+..+..++.+.|+..+|+..+++....+|
T Consensus 329 l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 329 LQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999855 675 777888999999999999999999997 56677666899999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 715 RNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 715 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
++ +..|.+|+..|...|+..+|...+.++..
T Consensus 406 ~d--p~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 406 ED--PNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CC--chHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99 99999999999999999999998877764
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.15 E-value=0.00084 Score=75.46 Aligned_cols=231 Identities=13% Similarity=0.109 Sum_probs=103.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 046631 447 MESYLIDMYAKSGLIKTARQIFEKNDSGDRDQA-TWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNP 525 (813)
Q Consensus 447 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 525 (813)
....|+..|...+++++|.++.+......|+.. .|-.+...+.+.++.+++..+ .+ +.....
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~~~~ 95 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDSFSQ 95 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhhccc
Confidence 334455555556666666666555443344332 233333344444444443333 11 111222
Q ss_pred CCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 046631 526 MGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLF 602 (813)
Q Consensus 526 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 602 (813)
..++.....+...+.+.+ -+...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|+.. +.++|++++
T Consensus 96 ~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 96 NLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred ccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 222222222333333322 1222445555666666666666666665552 2555666666666655 666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCCC
Q 046631 603 RSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEGN 681 (813)
Q Consensus 603 ~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 681 (813)
.+.+.. +...+++..+.++|.++... .|+ ...+..+....... + ..+.
T Consensus 173 ~KAV~~---------------~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~~------------~-~~~~ 221 (906)
T PRK14720 173 KKAIYR---------------FIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLGH------------R-EFTR 221 (906)
T ss_pred HHHHHH---------------HHhhhcchHHHHHHHHHHhc---CcccchHHHHHHHHHHhh------------h-ccch
Confidence 555542 33334445555555555422 332 22221111111111 0 0111
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 046631 682 VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA 730 (813)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 730 (813)
....+.-|-..|...++++++..+++.+++.+|.+ .....-++.+|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n--~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN--NKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc--hhhHHHHHHHHH
Confidence 22244444455555556666666666666666665 444444444444
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=0.00013 Score=64.54 Aligned_cols=115 Identities=14% Similarity=0.103 Sum_probs=54.0
Q ss_pred cCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhCcCC-Ch---HHHHHHHHHHHHHhCCHHH
Q 046631 627 AGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELGEEG-NV---LEIWGSLLGSCRLHGHSEL 701 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~l~~~~~~~g~~~~ 701 (813)
.++...+...++.+.+.++-.| .......+...+...|++++|...|+.+.... +. ..+...|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4444555555555544421111 12333344455555555555555555543221 11 1133344555555555555
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKE 744 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (813)
|+..++... -.+-. +..+.++|++|.+.|++++|...|++
T Consensus 104 Al~~L~~~~-~~~~~--~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIP-DEAFK--ALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhcc-CcchH--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554421 11111 44555666666666666666666654
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.13 E-value=5.9e-05 Score=66.20 Aligned_cols=111 Identities=15% Similarity=0.140 Sum_probs=90.2
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-C
Q 046631 601 LFRSMKGCGIEPDA-ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-G 677 (813)
Q Consensus 601 ~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 677 (813)
.+++... ..|+. .....+...+...|++++|...++.+... .| +...+..++.++.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 45544 34556667788899999999999888754 46 5788889999999999999999988887 5
Q ss_pred cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 678 EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 678 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
..|..+..|..+...+...|+.++|...++++++.+|++
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 566666788889999999999999999999999999987
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=4.8e-06 Score=52.79 Aligned_cols=35 Identities=37% Similarity=0.590 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 046631 192 VAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPST 226 (813)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 226 (813)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.0013 Score=60.69 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=103.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CCH-hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 046631 554 LIDMYSKSGVINYAANVFAKIPE--KNS-VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLV 630 (813)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~ 630 (813)
++-+..-+|+.+.|...++.+.. |+. ..-..-..-+-..|++++|+++++.+++.. +.|.+++.-=+...-..|+-
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 33344445555555555555432 111 111111222345677888888888888765 44555666555555667777
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC---CHHHHHHHH
Q 046631 631 DEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG---HSELAEVVA 706 (813)
Q Consensus 631 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~ 706 (813)
-+|++-+....+. +.-|...|.-+.++|...|++++|.--++++ ..+|..+..+..+...+...| +.+.+.+.+
T Consensus 137 l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7888777777754 3447888888888888888888888888886 456766656666666665554 567788899
Q ss_pred HHHhcCCCCC
Q 046631 707 KKLLEMDTRN 716 (813)
Q Consensus 707 ~~~~~~~p~~ 716 (813)
.+++++.|.+
T Consensus 215 ~~alkl~~~~ 224 (289)
T KOG3060|consen 215 ERALKLNPKN 224 (289)
T ss_pred HHHHHhChHh
Confidence 9999998865
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=6.4e-05 Score=76.92 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=81.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh
Q 046631 618 VAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH 696 (813)
Q Consensus 618 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 696 (813)
..|+..+...++++.|..+|+++.+. .|+. ...++.++...++-.+|++++++. ...|.....+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34455555566677777777776644 3443 334566666666666777766664 34454555666666777777
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 697 GHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 697 g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
++++.|+.+++++.++.|.+ ...+..|+.+|...|++++|+..+..+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~--f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSE--FETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777777777 7777777777777777777777776654
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.09 E-value=0.00012 Score=64.78 Aligned_cols=130 Identities=15% Similarity=0.072 Sum_probs=102.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhHHH
Q 046631 579 SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA--ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS--TEHYC 654 (813)
Q Consensus 579 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 654 (813)
...|..++..+. .++...+...++++.+....-.. .....+...+...|++++|...|+..... .-.|. .....
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 456777777774 88999999999999986322211 23444556788999999999999999976 42332 34556
Q ss_pred HHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 046631 655 CVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLL 710 (813)
Q Consensus 655 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 710 (813)
.|..++...|++++|+..++.....+..+.++..++..+...|+.++|...|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 78899999999999999999887666666688889999999999999999998864
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=0.0001 Score=75.45 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 046631 550 VGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGL 629 (813)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~ 629 (813)
...+|+..+...++++.|.++|+++.+.++.....++..+...++-.+|++++++.++. .+-+...+..-...|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 34456666777889999999999998777777777888888889999999999999874 23355566666777889999
Q ss_pred HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCC
Q 046631 630 VDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEG 680 (813)
Q Consensus 630 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 680 (813)
.+.|+.+.+++. .+.|+ ..+|..|+.+|...|+++.|+-.++.++..+
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999998 55886 8899999999999999999999999987544
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.03 E-value=0.0038 Score=70.41 Aligned_cols=241 Identities=12% Similarity=0.053 Sum_probs=129.3
Q ss_pred CCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHH
Q 046631 372 IERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYL 451 (813)
Q Consensus 372 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 451 (813)
.+.+...|..|+..+...+++++|.++.+...+. .|+...+-.+ +
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~---------------------------------~ 71 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYI---------------------------------S 71 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHH---------------------------------H
Confidence 3455666777777777777777777777755553 4444433211 2
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHH
Q 046631 452 IDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIEL 531 (813)
Q Consensus 452 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 531 (813)
...+.+.++.+++..+ .++..+....++.-+..+...|... .-+...+..+..+|.+.|+.++
T Consensus 72 G~l~~q~~~~~~~~lv---------------~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~k 134 (906)
T PRK14720 72 GILSLSRRPLNDSNLL---------------NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKK 134 (906)
T ss_pred HHHHHhhcchhhhhhh---------------hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHH
Confidence 2233333333322222 2222233333332233333333332 1222344555555556666666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 046631 532 GKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIE 611 (813)
Q Consensus 532 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 611 (813)
+..+++++.+.. +-|+.+.|.+...|... ++++|.+++.+. +..|...+++..+.++|.++.. ..
T Consensus 135 a~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~ 199 (906)
T PRK14720 135 LKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH--YN 199 (906)
T ss_pred HHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHh--cC
Confidence 666666665555 44666777777778777 888888876553 3446667788888888888887 34
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCChHHHHHHHH
Q 046631 612 PDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNVLEIWGSLL 690 (813)
Q Consensus 612 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~ 690 (813)
|+...+ -.++.+.+....+..--+.++.-+...|-..++|++++.+++.+- .++...-...-++
T Consensus 200 ~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 200 SDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred cccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHH
Confidence 443322 122222232221222224455556667777777888888877762 2332222445555
Q ss_pred HHHH
Q 046631 691 GSCR 694 (813)
Q Consensus 691 ~~~~ 694 (813)
.+|.
T Consensus 265 ~~y~ 268 (906)
T PRK14720 265 RFYK 268 (906)
T ss_pred HHHH
Confidence 5554
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.02 E-value=9.5e-06 Score=51.37 Aligned_cols=35 Identities=34% Similarity=0.518 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCH
Q 046631 377 VSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDS 411 (813)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 411 (813)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0016 Score=60.49 Aligned_cols=168 Identities=11% Similarity=0.120 Sum_probs=119.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-
Q 046631 499 VAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK- 577 (813)
Q Consensus 499 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 577 (813)
++.+.+.......+......-...|+..++.++|.+...... +......=+..+.+..+.+-|.+.++.|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344445444444444444444556777888888877665411 2223333355567888899999999999864
Q ss_pred CHhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhH
Q 046631 578 NSVTYTTMILGYGQ----HGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEH 652 (813)
Q Consensus 578 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~ 652 (813)
+-.+.+.|..++.+ .+.+.+|.-+|++|-+. ..|+..+.+..+.++...|++++|..+++....+ .+ ++.+
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k---d~~dpet 243 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK---DAKDPET 243 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc---cCCCHHH
Confidence 45677777777654 35689999999999875 6899999999999999999999999999999865 34 4777
Q ss_pred HHHHHHHHhccCCHHHHH-HHHHHh
Q 046631 653 YCCVADMLGRVGKVVEAY-EFVKEL 676 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~-~~~~~~ 676 (813)
...++-+-...|.-.++. +.+.++
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHH
Confidence 777777777777655543 556665
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=1e-05 Score=50.78 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=31.1
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 046631 191 VVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRP 224 (813)
Q Consensus 191 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 224 (813)
+.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00076 Score=62.11 Aligned_cols=163 Identities=18% Similarity=0.195 Sum_probs=128.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFV-AVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVAD 658 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 658 (813)
.|..++-+....|+.+.|...++++... + |...-.. .-..-+...|++++|.++++.+.++ +| |..++..-+-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlA 128 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHH
Confidence 3445566667789999999999999886 3 4443222 2222345689999999999999976 57 5778888888
Q ss_pred HHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC---
Q 046631 659 MLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN--- 734 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~--- 734 (813)
+.-..|+--+|++-+... ..-++..+.|..|...|...|+++.|...+++++-..|.+ +.++--+++++...|.
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n--~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN--PLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHhhHHH
Confidence 888888888888776664 4445666799999999999999999999999999999999 9999999999888774
Q ss_pred cHHHHHHHHHHHHCCC
Q 046631 735 WENVDKVRKEMRERGL 750 (813)
Q Consensus 735 ~~~A~~~~~~m~~~~~ 750 (813)
.+-|.+++.+..+...
T Consensus 207 ~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 207 LELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHHHhCh
Confidence 5578888888886543
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.4e-05 Score=50.19 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCC
Q 046631 376 VVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMI 409 (813)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 409 (813)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.94 E-value=0.00015 Score=74.84 Aligned_cols=103 Identities=11% Similarity=0.109 Sum_probs=74.6
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCC
Q 046631 621 LSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGH 698 (813)
Q Consensus 621 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~ 698 (813)
...+...|++++|+..|+++++ ..|+ ...|..++.+|.+.|++++|+..++++ ...|+.+.+|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3455667788888888888774 3564 677777778888888888888877776 4556566677777778888888
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 699 SELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 699 ~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
+++|+..++++++++|++ +.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~--~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGD--SRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Confidence 888888888888888877 6665555433
No 146
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00019 Score=68.51 Aligned_cols=102 Identities=16% Similarity=0.155 Sum_probs=91.0
Q ss_pred CC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC---CHHHHHHHHHHHhcCCCCCCCchh
Q 046631 647 QP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG---HSELAEVVAKKLLEMDTRNSMPGY 721 (813)
Q Consensus 647 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~ 721 (813)
+| |...|..|+..|.+.|+++.|..-|.+. ...|+.++++..+..++..+. ...++..++++++..+|.+ ...
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~--ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPAN--IRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCcc--HHH
Confidence 57 5999999999999999999999998886 678888888888877776553 5678999999999999999 999
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 722 HVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 722 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
..+|+..++.+|++.+|...|+.|.+...
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999997654
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.90 E-value=0.00012 Score=59.40 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=75.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA 730 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 730 (813)
.+..++..+...|++++|...++++ ...|....+|..+...+...|++++|...+++++...|.+ ...+..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN--AKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--hhHHHHHHHHHH
Confidence 3556777778888888888888876 3445444578888888888899999999999999888887 677888888999
Q ss_pred hcCCcHHHHHHHHHHHHC
Q 046631 731 EEGNWENVDKVRKEMRER 748 (813)
Q Consensus 731 ~~g~~~~A~~~~~~m~~~ 748 (813)
..|++++|...+++..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999988887643
No 148
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.00014 Score=68.83 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=48.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCH
Q 046631 589 YGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKV 666 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 666 (813)
+.+.+++++|+..|.+.++ +.| |.+.|..=..+|++.|.++.|++-.+..+ .+.|. ..+|..|+.+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcH
Confidence 4455566666666666665 332 34445555556666666666665554444 44554 55555555555555555
Q ss_pred HHHHHHHHHh-CcCCChH
Q 046631 667 VEAYEFVKEL-GEEGNVL 683 (813)
Q Consensus 667 ~~A~~~~~~~-~~~~~~~ 683 (813)
++|++.|++. ...|+..
T Consensus 166 ~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHhhhccCCCcH
Confidence 5555555543 3444444
No 149
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.87 E-value=0.046 Score=56.42 Aligned_cols=64 Identities=8% Similarity=0.179 Sum_probs=40.1
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHhhCCCChhHHHHHHHHHHHhC
Q 046631 190 NVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTI-SFVNVFPALSSLGDYKSADVVYGLLVKLG 256 (813)
Q Consensus 190 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 256 (813)
|+.+|+.||+-+-.+ .++++.+.+++|.. +-|+.. .|..-|..-....+++....+|.+.+..-
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv 83 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV 83 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 666777777765554 77777777777765 344433 55555666666666666666666655544
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.00023 Score=67.45 Aligned_cols=98 Identities=20% Similarity=0.218 Sum_probs=80.4
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 700 (813)
-..+.+++.+|+..|.+++ .+.|+ +..|..-..+|.+.|.++.|++-.+.. ..+|.....|..|+.+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 4567788999999999888 66884 777888889999999999998776664 667777779999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 701 LAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 701 ~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
+|++.|+++++++|++ .++...|
T Consensus 167 ~A~~aykKaLeldP~N--e~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDN--ESYKSNL 189 (304)
T ss_pred HHHHHHHhhhccCCCc--HHHHHHH
Confidence 9999999999999998 5444433
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.82 E-value=0.00035 Score=59.65 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=45.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhC-cCCC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC-CchhHHHHHH
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKELG-EEGN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS-MPGYHVLLSN 727 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~~~l~~ 727 (813)
+..++..+.+.|++++|.+.++++. ..|+ ...++..++.++...|+++.|...+++++...|++. .+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3344444455555555555554441 1111 122444455555555555555555555555544421 1233445555
Q ss_pred HHHhcCCcHHHHHHHHHHHHC
Q 046631 728 IYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 728 ~~~~~g~~~~A~~~~~~m~~~ 748 (813)
++.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555543
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.79 E-value=0.00051 Score=58.61 Aligned_cols=101 Identities=13% Similarity=0.089 Sum_probs=71.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCC---hHHHHHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELG-EEGN---VLEIWGSLL 690 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~~l~ 690 (813)
++..+...+...|++++|...|..+...+.-.| ....+..++.++.+.|++++|.+.++.+. ..|+ .+.++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445566667777888888888877775421111 13456667888888888888888888763 2232 344777888
Q ss_pred HHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 691 GSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 691 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.++...|+.++|...++++++..|++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 88888888888888888888888886
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.79 E-value=2.9e-05 Score=61.17 Aligned_cols=79 Identities=24% Similarity=0.266 Sum_probs=49.1
Q ss_pred cCCHHHHHHHHHHhC-cCC-C-hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHH
Q 046631 663 VGKVVEAYEFVKELG-EEG-N-VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVD 739 (813)
Q Consensus 663 ~g~~~~A~~~~~~~~-~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 739 (813)
.|+++.|+.+++++. ..| + ....|..+..++.+.|++++|..++++ .+.++.+ .....+++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--PDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--HHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHHHhCCHHHHH
Confidence 356666666666652 222 1 223555667777777777777777766 5555555 566666677777777777777
Q ss_pred HHHHH
Q 046631 740 KVRKE 744 (813)
Q Consensus 740 ~~~~~ 744 (813)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.77 E-value=0.00037 Score=72.00 Aligned_cols=100 Identities=10% Similarity=-0.049 Sum_probs=81.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc
Q 046631 585 MILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRV 663 (813)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 663 (813)
....+...|++++|++.|+++++.. +-+...|..+..+|...|++++|+..++++. .+.|+ ...|..++.+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHh
Confidence 3556778899999999999999853 2345578888889999999999999999998 45775 88899999999999
Q ss_pred CCHHHHHHHHHHh-CcCCChHHHHHH
Q 046631 664 GKVVEAYEFVKEL-GEEGNVLEIWGS 688 (813)
Q Consensus 664 g~~~~A~~~~~~~-~~~~~~~~~~~~ 688 (813)
|++++|+..+++. ...|+...+...
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999986 555666634333
No 155
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.77 E-value=0.11 Score=57.33 Aligned_cols=217 Identities=11% Similarity=0.114 Sum_probs=143.2
Q ss_pred CChhHHHHHHcccCCCCc-ccHHHHHHHH--HcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHH
Q 046631 174 SKYDLVCKVFDTMRRRNV-VAWNTIVSWY--VKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYG 250 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~-~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 250 (813)
+++..|....+.+.++.+ ..|..++.++ .|.|+.++|..+++.....+.. |..|...+-..|...+..++|..+|+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 677777777776654222 3455555554 5799999999999888765544 77789999999999999999999999
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHHHhcCChH----HHHHHHhhcCCCCcchHHHHHHHHHhC-CCc---------hHHHHH
Q 046631 251 LLVKLGSEYVNDLFVASSAIFMYAELGCFD----FARKIFDNCLERNTEVWNTMIGGYVQN-NHP---------VEAIEL 316 (813)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~---------~~A~~~ 316 (813)
.+.+.. |+......+..+|.|.+.+. .|.+++...++.--..|+ +++.+.+. ... .-|.+.
T Consensus 102 ~~~~~~----P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 102 RANQKY----PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHhhC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHHH
Confidence 999887 77777778888888887655 456667765555444454 44444332 112 234445
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHH
Q 046631 317 FVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGL 396 (813)
Q Consensus 317 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 396 (813)
+...+.+.|-.-+..-...-+..+...+++++|..++..-.- +.+..-+...-+.-+..+...+++.+..
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la----------~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLA----------EKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHH----------HhccccchHHHHHHHHHHHHhcChHHHH
Confidence 534444444222333334444555677888888887743222 1112234444556677778889999999
Q ss_pred HHHHHHHHCC
Q 046631 397 MLVYEMQKQG 406 (813)
Q Consensus 397 ~~~~~m~~~g 406 (813)
++-.++...|
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 9888888875
No 156
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0014 Score=64.78 Aligned_cols=89 Identities=15% Similarity=0.071 Sum_probs=60.3
Q ss_pred HHHhccCCHHHHHHHHHHh-CcCCChH----HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhc
Q 046631 658 DMLGRVGKVVEAYEFVKEL-GEEGNVL----EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEE 732 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 732 (813)
+-..+.|++.+|.+.+.+. ...|+.. ..|.....+..+.|+.++|+.-.++++.++|.- ...|..-++++...
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy--ikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY--IKALLRRANCHLAL 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH--HHHHHHHHHHHHHH
Confidence 4455677777777777665 3333221 145555666667778888888888888777776 66677777777777
Q ss_pred CCcHHHHHHHHHHHHC
Q 046631 733 GNWENVDKVRKEMRER 748 (813)
Q Consensus 733 g~~~~A~~~~~~m~~~ 748 (813)
++|++|.+.+++..+.
T Consensus 335 e~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888888877777654
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=97.73 E-value=0.00076 Score=58.58 Aligned_cols=101 Identities=12% Similarity=-0.020 Sum_probs=85.2
Q ss_pred CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhH
Q 046631 645 KIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYH 722 (813)
Q Consensus 645 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 722 (813)
|+.++ ....-....-+...|++++|..+|.-+ ..++..++.|..|..+|...+++++|...|..+..+++++ |...
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d--p~p~ 108 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND--YRPV 108 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC--CCcc
Confidence 55554 333445566667899999999999987 3456667789999999999999999999999999999988 8888
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 723 VLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
...+.+|...|+.+.|+.-|+...+
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh
Confidence 8999999999999999999998884
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.71 E-value=0.13 Score=56.71 Aligned_cols=183 Identities=13% Similarity=0.043 Sum_probs=79.9
Q ss_pred hcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHH
Q 046631 275 ELGCFDFARKIFDNCLE---RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQ 351 (813)
Q Consensus 275 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 351 (813)
+.|+.++|..+++.... .|..|...+-..|...++.++|..+|.+... ..|+..-...+..++.+.+++..-.+
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ---KYPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544443322 1444555555555555555555555533322 23444445555555555555444433
Q ss_pred HHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCC----------cHHHHHHHHHHHHCC-CCCCHhHHHHHHHH
Q 046631 352 LHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGL----------DDEGLMLVYEMQKQG-FMIDSVTVTALLSA 420 (813)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g-~~pd~~t~~~ll~~ 420 (813)
+--++-+.++ .+...+..+++.+.+.-. ..-|.+.++.+.+.+ ---+..-...-+..
T Consensus 132 aa~~LyK~~p------------k~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 132 AALQLYKNFP------------KRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHhCC------------cccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 3333333221 223333333333322211 112334444444433 11111112222333
Q ss_pred HhcCCChHHHHHHHHHHHHhC-CCCc-chHHHHHHHHHhcCCHHHHHHHHhhcC
Q 046631 421 ASNLRNQDVGKQTHAYLLRHG-IHFE-GMESYLIDMYAKSGLIKTARQIFEKND 472 (813)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 472 (813)
+...+.+++|.+++..-.... ...+ ..-+.-++.+...+++.+..++-.++.
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 445566666666663322222 2222 444555666666666666655555544
No 159
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.70 E-value=8.2e-05 Score=56.03 Aligned_cols=64 Identities=22% Similarity=0.166 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcC-CcHHHHHHHHHHHHC
Q 046631 683 LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEG-NWENVDKVRKEMRER 748 (813)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 748 (813)
+.+|..++..+...|++++|+..|+++++.+|++ +..+..++.+|.+.| ++++|.+.+++..+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN--AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH--HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3478888888999999999999999999999988 888999999999998 789999998887753
No 160
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=5.3e-05 Score=46.24 Aligned_cols=31 Identities=35% Similarity=0.588 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 046631 192 VAWNTIVSWYVKTERYVEAVRQFRMMLRMGI 222 (813)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 222 (813)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
No 161
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.70 E-value=0.00014 Score=53.87 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=36.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 689 LLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 689 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+...+...|++++|+..++++++.+|++ +..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDN--PEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTH--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666 666666666666666666666666666543
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.68 E-value=0.00013 Score=54.18 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=55.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 655 CVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 655 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.++..+.+.|++++|++.++++ ...|+.+.+|..++.++...|++++|...++++++..|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3577889999999999999997 6668888899999999999999999999999999999986
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.63 E-value=0.0002 Score=56.38 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHH
Q 046631 593 GMSERALSLFRSMKGCGIE-PDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAY 670 (813)
Q Consensus 593 g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 670 (813)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. . ...|+ ......++.++.+.|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4455555555555542210 1222333344445555555555555544 1 11222 223333344455555555555
Q ss_pred HHHH
Q 046631 671 EFVK 674 (813)
Q Consensus 671 ~~~~ 674 (813)
+.++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4444
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.63 E-value=6.5e-05 Score=45.83 Aligned_cols=31 Identities=32% Similarity=0.606 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHCCCcHHHHHHHHHHHHCCC
Q 046631 377 VSWNTMISAFVQNGLDDEGLMLVYEMQKQGF 407 (813)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 407 (813)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=0.00088 Score=61.41 Aligned_cols=83 Identities=19% Similarity=0.113 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhCc-CC---ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKELGE-EG---NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
...+..++..+...|++++|...+++... .+ ....+|..++..+...|++++|...++++++..|.+ +..+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ--PSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHH
Confidence 55677777888888888888888877631 12 223478888888889999999999999999998888 7888888
Q ss_pred HHHHHhcCC
Q 046631 726 SNIYAEEGN 734 (813)
Q Consensus 726 ~~~~~~~g~ 734 (813)
+.+|...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 888888776
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.61 E-value=0.002 Score=59.07 Aligned_cols=117 Identities=14% Similarity=0.134 Sum_probs=81.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHH
Q 046631 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD--AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYC 654 (813)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 654 (813)
....+..+...+...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+++..+ +.|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 455677777778888888888888888876433332 24666777777888888888888887774 3564 66666
Q ss_pred HHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 655 CVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 655 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.++.+|...|+...+..-++... ..+++|..++++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~-------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE-------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH-------------------HHHHHHHHHHHHHHhhCchh
Confidence 77777777777666554333221 12577888999999988876
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.56 E-value=0.00078 Score=61.53 Aligned_cols=95 Identities=17% Similarity=-0.039 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKELG-EEGN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
...|..++..+...|++++|+..+++.. ..++ .+.+|..+...+...|++++|+..+++++.+.|.. ...+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~--~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL--PQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HHHHHHH
Confidence 6667778888888899999999888862 2222 33478899999999999999999999999999887 7778888
Q ss_pred HHHHH-------hcCCcHHHHHHHHHHH
Q 046631 726 SNIYA-------EEGNWENVDKVRKEMR 746 (813)
Q Consensus 726 ~~~~~-------~~g~~~~A~~~~~~m~ 746 (813)
+.+|. +.|++++|...+++..
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 88888 8888886666665543
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.55 E-value=0.011 Score=51.75 Aligned_cols=151 Identities=13% Similarity=0.070 Sum_probs=115.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHH
Q 046631 590 GQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 668 (813)
.+.=+.+...+-..+-.+ .-|+...-..|..+....|+..+|...|++... |+-. |......+.++....+++.+
T Consensus 67 ~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 67 QQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHH
Confidence 333344444443333333 577777777888899999999999999998875 5554 58888888999999999999
Q ss_pred HHHHHHHhCcCC---ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 669 AYEFVKELGEEG---NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 669 A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
|...++++.+-+ ..++..-.+...+...|..+.|+..|+.++.--|+ +..-...+..+.++|+.++|..-+..+
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg---~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG---PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC---HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 999998873322 23345566778888999999999999999999888 567777888999999999888766555
Q ss_pred HH
Q 046631 746 RE 747 (813)
Q Consensus 746 ~~ 747 (813)
.+
T Consensus 220 ~d 221 (251)
T COG4700 220 VD 221 (251)
T ss_pred HH
Confidence 43
No 169
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.55 E-value=0.00073 Score=66.36 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=89.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHH---HHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-------CcCCChHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDL---MQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-------GEEGNVLE 684 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~ 684 (813)
.|..|...|.-.|+++.|+...+. +.++||-.. ..+.+..+++++.-.|+++.|.+.|+.. ........
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455566666667888888876553 334455444 3678888999999999999999888763 22222233
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcC----CCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEM----DTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+-.+|.+.|.-..+++.|+.+..+-+.+ +...-....+-.|+++|...|..++|..+.++-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888888888887665433 21111145566788889999999988887766554
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.55 E-value=0.003 Score=54.70 Aligned_cols=92 Identities=7% Similarity=-0.119 Sum_probs=54.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh
Q 046631 619 AVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH 696 (813)
Q Consensus 619 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 696 (813)
.+..-+...|++++|..+|+-+. -+.|. ..-|..|+-++...|++++|+..|... ...|+.+..+..+..++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 33334455666666666666555 33553 555556666666666666666666654 34455555566666666666
Q ss_pred CCHHHHHHHHHHHhcCC
Q 046631 697 GHSELAEVVAKKLLEMD 713 (813)
Q Consensus 697 g~~~~a~~~~~~~~~~~ 713 (813)
|+.+.|+..|+.++..-
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 66666666666666544
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.55 E-value=0.0019 Score=59.02 Aligned_cols=80 Identities=14% Similarity=0.090 Sum_probs=40.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 046631 579 SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD--AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCC 655 (813)
Q Consensus 579 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 655 (813)
...|..+...+...|++++|+..|++.......+. ..++..+...+...|+.++|+..++...+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34455555555566666666666666655322211 12455555555566666666666655552 2333 334444
Q ss_pred HHHHHh
Q 046631 656 VADMLG 661 (813)
Q Consensus 656 l~~~~~ 661 (813)
++.++.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 444444
No 172
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.53 E-value=0.11 Score=51.34 Aligned_cols=145 Identities=17% Similarity=0.089 Sum_probs=101.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHH--HH
Q 046631 594 MSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVE--AY 670 (813)
Q Consensus 594 ~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--A~ 670 (813)
+...|...-.+..+ +.||.+ .-.....++.+.|++.++-.+++.+-+. .|.+... ....+.+.|+... ..
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia--~lY~~ar~gdta~dRlk 316 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIA--LLYVRARSGDTALDRLK 316 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHH--HHHHHhcCCCcHHHHHH
Confidence 34555555555555 667765 3334456788999999999999988754 6665554 3344567775322 22
Q ss_pred HHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhc-CCcHHHHHHHHHHHHC
Q 046631 671 EFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEE-GNWENVDKVRKEMRER 748 (813)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 748 (813)
..-+--..+|+..++...+..+-...|++..|..-.+.+....|. .++|.+|+++-... |+-.++...+-+..+.
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr---es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR---ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch---hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 221111345666667777788888889999999999999999999 57889999987766 9999998888777654
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.52 E-value=0.0002 Score=53.65 Aligned_cols=50 Identities=20% Similarity=0.411 Sum_probs=32.8
Q ss_pred HhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 695 LHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
..|++++|+..++++++.+|++ +.....++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN--PEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS--HHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666666666666666 6666666666666666666666666655
No 174
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.50 E-value=0.0012 Score=53.35 Aligned_cols=90 Identities=22% Similarity=0.195 Sum_probs=43.7
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCH
Q 046631 622 SACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHS 699 (813)
Q Consensus 622 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~ 699 (813)
..+...|++++|..+++.+.+. .|+ ...+..++.++...|++++|.+.++.. ...|....+|..+...+...|+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3344444455555544444422 222 234444455555555555555555443 22222223555555556666666
Q ss_pred HHHHHHHHHHhcCCC
Q 046631 700 ELAEVVAKKLLEMDT 714 (813)
Q Consensus 700 ~~a~~~~~~~~~~~p 714 (813)
+.|...++++++..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666655544
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.50 E-value=0.00017 Score=54.11 Aligned_cols=63 Identities=27% Similarity=0.329 Sum_probs=35.7
Q ss_pred ccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 046631 662 RVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLS 726 (813)
Q Consensus 662 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~ 726 (813)
..|++++|+++++++ ...|+...++..+..+|.+.|++++|..+++++...+|++ +.++.+++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN--PEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH--HHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH--HHHHHHHh
Confidence 455566666666554 3445444456666666666666666666666666666665 44444443
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.49 E-value=0.0049 Score=66.61 Aligned_cols=136 Identities=15% Similarity=0.025 Sum_probs=73.0
Q ss_pred CCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhcc--------CcHHHHHHHHHHHHH
Q 046631 577 KNSVTYTTMILGYGQH-----GMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYA--------GLVDEGLQIFDLMQQ 642 (813)
Q Consensus 577 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~--------g~~~~a~~~~~~~~~ 642 (813)
.|..+|...+.+.... ++...|..+|++.++ ..|+.. .+..+..++... +++..+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4666777766664432 225678888888887 566653 333332222111 112233333333221
Q ss_pred hcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 643 EYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 643 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
. ...| +...|..+.-.....|++++|...++++ ..+|+ ...|..++..+...|+.++|...+++++.++|.+
T Consensus 413 l-~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 413 L-PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred c-ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 1 1122 3455665655555566666666666665 33343 3366666666666666666666666666666665
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.49 E-value=0.0032 Score=68.00 Aligned_cols=136 Identities=13% Similarity=0.104 Sum_probs=102.2
Q ss_pred CCCCCHHHHHHHHHHHhc--c---CcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc--------CCHHHHHHHHH
Q 046631 609 GIEPDAITFVAVLSACSY--A---GLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRV--------GKVVEAYEFVK 674 (813)
Q Consensus 609 g~~p~~~~~~~ll~a~~~--~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 674 (813)
+...+...|..++++... . +....|..+|+++. ...|+ ...|..+..++... ++++.+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 356677888888887543 2 34779999999998 45897 66666665555332 22344555555
Q ss_pred Hh---CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 675 EL---GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 675 ~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
+. ...+..+.++..+.-.....|++++|...++++++++|. ...|..++.++...|+.++|.+.+++.....+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 43 224444557888877777789999999999999999994 68999999999999999999999999987654
No 178
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.49 E-value=0.00034 Score=52.65 Aligned_cols=66 Identities=21% Similarity=0.165 Sum_probs=55.4
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC-CHHHHHHHHHHHhcCCC
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG-HSELAEVVAKKLLEMDT 714 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 714 (813)
++..|..++..+...|++++|+..|++. ...|+.+.+|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567888888888999999999888875 567777778999999999998 78999999999988877
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.48 E-value=0.015 Score=58.28 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=68.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHH
Q 046631 585 MILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYA-GLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADM 659 (813)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~ 659 (813)
.+..|...|++..|-+++.++ ...|... |++++|++.|++..+.|...-. ...+..++.+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 345555666665555444443 3345555 6777777777766654322222 4456677788
Q ss_pred HhccCCHHHHHHHHHHhCcC----C----ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 660 LGRVGKVVEAYEFVKELGEE----G----NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 660 ~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
+.+.|++++|.++|+++... + .....+...+-++...||...|...+++..+.+|.-
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 88888888888888876321 1 111223333445566788888888998888888764
No 180
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.35 E-value=0.21 Score=50.32 Aligned_cols=106 Identities=14% Similarity=0.093 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 046631 553 SLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDE 632 (813)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~ 632 (813)
..|.-+...|+...|.++-.+..-|+-.-|...+.+|+..++|++-..+... +-+++-|..++.+|...|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3344455566666666666666666666666666666666666655554321 1123556666666666666666
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHH
Q 046631 633 GLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKE 675 (813)
Q Consensus 633 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 675 (813)
|..++.++ + +..-+.+|.++|++.+|.+.--+
T Consensus 256 A~~yI~k~-------~----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 256 ASKYIPKI-------P----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHhC-------C----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 66655432 1 13345666666666666555433
No 181
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.29 E-value=0.0008 Score=51.25 Aligned_cols=58 Identities=17% Similarity=0.113 Sum_probs=48.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 690 LGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 690 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
...+.+.+++++|..++++++.++|++ +..+...+.+|.+.|++++|.+.+++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD--PELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc--chhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 345677888888999999999888888 8888888888999999999999888888553
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.28 E-value=0.014 Score=58.16 Aligned_cols=134 Identities=13% Similarity=0.113 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSA-CSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVAD 658 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 658 (813)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.++ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 468888888888888999999999998643 2334445555444 3346777779999999998743 35777888899
Q ss_pred HHhccCCHHHHHHHHHHhCcC-CC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 659 MLGRVGKVVEAYEFVKELGEE-GN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.+.+.|+.+.|..+|++.... +. ...+|...+..-.+.|+.+....+.+++.+..|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999997432 21 22389999999999999999999999999988885
No 183
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.27 E-value=0.0033 Score=61.25 Aligned_cols=88 Identities=10% Similarity=0.084 Sum_probs=40.9
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHh----CcCCChHHHHHHHHHHHHHh
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKEL----GEEGNVLEIWGSLLGSCRLH 696 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~ 696 (813)
.+.|++++|...|+.+.+. .|+ ...+..++.+|...|++++|...|+.+ +..+..+++|..++..+...
T Consensus 154 ~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 3445555555555555543 232 234444455555555555555444443 22223333444444444444
Q ss_pred CCHHHHHHHHHHHhcCCCC
Q 046631 697 GHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 697 g~~~~a~~~~~~~~~~~p~ 715 (813)
|+.+.|..+++++++..|+
T Consensus 231 g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred CCHHHHHHHHHHHHHHCcC
Confidence 5555555555555544444
No 184
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.21 E-value=0.0051 Score=59.96 Aligned_cols=98 Identities=8% Similarity=0.005 Sum_probs=55.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh-CcCC---ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC-CchhHHHHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKEL-GEEG---NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS-MPGYHVLLS 726 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~~~l~ 726 (813)
.|...+..+.+.|++++|+..|+.+ ...| ..+.++..++..+...|++++|...|+++++..|++. .+..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666554 1222 2234566666666666666666666666666655531 133444456
Q ss_pred HHHHhcCCcHHHHHHHHHHHHCC
Q 046631 727 NIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 727 ~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
.+|...|++++|.++++++.+.-
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 66666666666666666666543
No 185
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.16 E-value=0.48 Score=50.66 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=21.0
Q ss_pred hHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHH
Q 046631 279 FDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELF 317 (813)
Q Consensus 279 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 317 (813)
+++|.+..+.- |....|..+...-.+.-.++.|...|
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AF 715 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAF 715 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhh
Confidence 45555555443 33455666666666656666666665
No 186
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.15 E-value=0.042 Score=51.82 Aligned_cols=50 Identities=10% Similarity=0.107 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCCCCCC---------------chhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 699 SELAEVVAKKLLEMDTRNSM---------------PGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 699 ~~~a~~~~~~~~~~~p~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..+|...++.++...|+... ...-..++..|.+.|++..|..-++.+.+.
T Consensus 106 ~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 106 TRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34556666666666666411 223344788899999999999999999853
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.14 E-value=0.0084 Score=50.13 Aligned_cols=90 Identities=17% Similarity=0.088 Sum_probs=50.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhCcCC----ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC-chhHHHHHHHHH
Q 046631 656 VADMLGRVGKVVEAYEFVKELGEEG----NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM-PGYHVLLSNIYA 730 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~~~l~~~~~ 730 (813)
+..++-..|+.++|+.+|++....+ .....+-.+...++..|+.++|..++++.+...|++.. .....+++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3445555566666666666543222 11224555666666666666666666666666565100 444555566666
Q ss_pred hcCCcHHHHHHHHHH
Q 046631 731 EEGNWENVDKVRKEM 745 (813)
Q Consensus 731 ~~g~~~~A~~~~~~m 745 (813)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777776665443
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.13 E-value=0.024 Score=49.79 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=94.3
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcC---CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 639 LMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEE---GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 639 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+..+.+.+.|++...-.|...+.+.|+..||...|++...- ++.. +.-.+..+....++...|...++++.+..|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a-~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA-MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH-HHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 44455577899888999999999999999999999997433 3444 7778888889999999999999999999887
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 716 NSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 716 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
--.|....+++..|...|+.++|+..|+...+.-+
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 65577788999999999999999999999987643
No 189
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0048 Score=61.45 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECCE
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGY 764 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 764 (813)
++..|..++.+.+++..|+....++++++|.| .-.+.--+.+|...|.++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N--~KALyRrG~A~l~~~e~~~A~~df~ka~k~---------------- 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNN--VKALYRRGQALLALGEYDLARDDFQKALKL---------------- 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------
Confidence 77888899999999999999999999999999 888889999999999999999999999843
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 046631 765 VNRFASKDQEHPQSHKIYEMLERLAMEMRN 794 (813)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 794 (813)
.|.+.++...|..+..++++
T Consensus 321 ----------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ----------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ----------CCCcHHHHHHHHHHHHHHHH
Confidence 46666777777666655544
No 190
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.06 E-value=0.0074 Score=48.34 Aligned_cols=85 Identities=12% Similarity=0.100 Sum_probs=52.8
Q ss_pred HHHHhccCCChHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHH
Q 046631 519 VLPACNPMGNIELGKQLHGFSIRYLL-DQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSER 597 (813)
Q Consensus 519 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 597 (813)
.|..|...+++...-.+++.+++.|+ -|++.+|+.++...++..--. ..-.++..+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~-----------------------~~ie~kl~~ 87 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS-----------------------EDIENKLTN 87 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc-----------------------hhHHHHHHH
Confidence 34444444555555556666666666 556666666655544332110 011224567
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 046631 598 ALSLFRSMKGCGIEPDAITFVAVLSACSY 626 (813)
Q Consensus 598 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 626 (813)
.+.+|+.|+..+++|+..||+.++..+.+
T Consensus 88 LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 88 LLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 78888999999999999999999987654
No 191
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.25 Score=49.50 Aligned_cols=88 Identities=15% Similarity=-0.007 Sum_probs=64.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHh
Q 046631 586 ILGYGQHGMSERALSLFRSMKGC---GIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLG 661 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 661 (813)
.+-..+.|++..|.+.|.+.+.. ++.|+...|........+.|+..+|+.--++.. .+.|. +..|..-..++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHH
Confidence 34456778888888888888763 234444567777777788888888888777766 55665 666666677777
Q ss_pred ccCCHHHHHHHHHHh
Q 046631 662 RVGKVVEAYEFVKEL 676 (813)
Q Consensus 662 ~~g~~~~A~~~~~~~ 676 (813)
..+.|++|.+-+++.
T Consensus 333 ~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888888775
No 192
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.04 E-value=0.0069 Score=62.60 Aligned_cols=120 Identities=7% Similarity=-0.014 Sum_probs=75.4
Q ss_pred CCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCHh
Q 046631 507 HNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRY--LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE----KNSV 580 (813)
Q Consensus 507 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~ 580 (813)
.+...+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+++.++++.=.. ||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 445667777778888888887888877777766655 2222233445666666666666666666654332 5666
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY 626 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 626 (813)
++|.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666666666665555555555555554443
No 193
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.7 Score=50.15 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 046631 550 VGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGL 629 (813)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~ 629 (813)
+.+--+.-+...|+..+|.++-.+..-||-..|.--+.+++..++|++-+++-+.+.. +.-|.....+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhccc
Confidence 3444555667789999999999999989999999999999999999988777665432 4557778889999999
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHH
Q 046631 630 VDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKE 675 (813)
Q Consensus 630 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 675 (813)
.++|.+++-+.. | +.-.+.+|.+.|++.+|.++--+
T Consensus 760 ~~EA~KYiprv~---~-------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 760 KDEAKKYIPRVG---G-------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhhhhhccC---C-------hHHHHHHHHHhccHHHHHHHHHH
Confidence 999999885442 1 11578889999999998877554
No 194
>PRK11906 transcriptional regulator; Provisional
Probab=97.01 E-value=0.055 Score=55.68 Aligned_cols=159 Identities=13% Similarity=0.124 Sum_probs=112.8
Q ss_pred hHH--HHHHHHHHhcC-----ChHHHHHHHHHHHh-CCCCCCHH-HHHHHHHHHh---------ccCcHHHHHHHHHHHH
Q 046631 580 VTY--TTMILGYGQHG-----MSERALSLFRSMKG-CGIEPDAI-TFVAVLSACS---------YAGLVDEGLQIFDLMQ 641 (813)
Q Consensus 580 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~~~-~~~~ll~a~~---------~~g~~~~a~~~~~~~~ 641 (813)
..| ..++.+..... ..+.|+.+|.+... +.+.|+-. .|..+..++. ......+|.++.++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 55666554422 34678889999882 22667654 3333333221 1234556777777666
Q ss_pred HhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCc
Q 046631 642 QEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMP 719 (813)
Q Consensus 642 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 719 (813)
.+.| |+.....++.++.-.|+++.|..+|++. ..+|+...+|....+.+...|+.++|.+.++++++++|.- .
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~--~ 406 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR--R 406 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh--h
Confidence 5567 5888999999999999999999999997 6788888899999999999999999999999999999987 5
Q ss_pred hhHHHHHHH-HHhcCCcHHHHHHHH
Q 046631 720 GYHVLLSNI-YAEEGNWENVDKVRK 743 (813)
Q Consensus 720 ~~~~~l~~~-~~~~g~~~~A~~~~~ 743 (813)
..-++-.++ ..-....++|.+++-
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 407 KAVVIKECVDMYVPNPLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHHcCCchhhhHHHHh
Confidence 544444444 333455677777664
No 195
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.00 E-value=0.56 Score=50.18 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=59.9
Q ss_pred CCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHh-CCCCC------CcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcc
Q 046631 223 RPSTISFVNVFPALSSLGDYKSADVVYGLLVKL-GSEYV------NDLFVASSAIFMYAELGCFDFARKIFDNCLERNTE 295 (813)
Q Consensus 223 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 295 (813)
.|.+..|..+.......-.++.|...|-..... |+.+. .......+=+. +--|++++|++++-.+..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 466666666666555555555555554333211 11100 01111111122 224889999999988877764
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCC----hhhHHHHHHHhcccCcchHHHHHH
Q 046631 296 VWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFD----DVTFLSALSAVSQLQELDLGQQLH 353 (813)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~ 353 (813)
.|..+.+.|++-.+.+++ + ..|-..| ...++.+-+.++....++.|.+.+
T Consensus 766 ----Aielr~klgDwfrV~qL~-r---~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLI-R---NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHH-H---ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777777666 2 1221111 123444444555555555554443
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.00 E-value=0.0027 Score=48.26 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=52.5
Q ss_pred HHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHH
Q 046631 657 ADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHV 723 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~ 723 (813)
..+|.+.+++++|.+.++.+ ...|+.+..|...+.++...|++++|...++++++..|++ +....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~--~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD--PDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc--HHHHH
Confidence 35678888888888888887 4567777688888889999999999999999999999987 55443
No 197
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.96 E-value=0.0034 Score=64.07 Aligned_cols=63 Identities=14% Similarity=-0.001 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHH---HHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLE---IWGSLLGSCRLHGHSELAEVVAKKLLEM 712 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 712 (813)
...++.++.+|.+.|++++|+..+++. ..+|+... +|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555666666666666666665552 44444332 3555666666666666666666666554
No 198
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.93 E-value=0.029 Score=56.10 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=98.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC---CCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CCC--hhHHHH
Q 046631 585 MILGYGQHGMSERALSLFRSMKGCGI---EPDA--ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKI--QPS--TEHYCC 655 (813)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~ 655 (813)
....|...|++++|.+.|.+..+... .+.. ..|......| +.+++++|...+++....+.- .|+ ...+..
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45555666666666666655433211 1111 1333333333 334777777777766554211 222 556777
Q ss_pred HHHHHhcc-CCHHHHHHHHHHh----CcCCC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCc-----hhH
Q 046631 656 VADMLGRV-GKVVEAYEFVKEL----GEEGN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMP-----GYH 722 (813)
Q Consensus 656 l~~~~~~~-g~~~~A~~~~~~~----~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~ 722 (813)
++.+|... |++++|++.|++. ...+. ....+..+...+.+.|++++|..++++......++... .++
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 88889888 9999999999886 22222 22367788899999999999999999987654332111 233
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 723 VLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
...+-++...|+...|.+.+++..+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33455677889999999999988754
No 199
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.92 E-value=0.018 Score=59.55 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=88.5
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEH--NVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSL 554 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 554 (813)
+......++.......+.+.+..++.+.+.. ....-..|..++++.|.+.|..+.+..++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 5566777777777778888888888888765 22233445668999999999999999999988889999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC----CCHhHHHHHHHHHHhc
Q 046631 555 IDMYSKSGVINYAANVFAKIPE----KNSVTYTTMILGYGQH 592 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~ 592 (813)
++.+.+.|++..|.++...|.. .+..++.-.+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999998887762 2445555445554443
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.90 E-value=0.025 Score=47.31 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=62.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 046631 585 MILGYGQHGMSERALSLFRSMKGCGIEPDA--ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLG 661 (813)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 661 (813)
+..++-..|+.++|+.+|++....|..... ..+..+.+.+...|++++|..++++....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455667788888888888888887766543 3566677788888888888888888876531111 1233334556777
Q ss_pred ccCCHHHHHHHHHH
Q 046631 662 RVGKVVEAYEFVKE 675 (813)
Q Consensus 662 ~~g~~~~A~~~~~~ 675 (813)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888877654
No 201
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.82 E-value=0.32 Score=47.17 Aligned_cols=175 Identities=11% Similarity=0.019 Sum_probs=97.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CCH-h---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-
Q 046631 554 LIDMYSKSGVINYAANVFAKIPE--KNS-V---TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY- 626 (813)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~--~~~-~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~- 626 (813)
....+.+.|++++|.+.|+++.. |+. . +.-.++.+|.+.+++++|...+++.++....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445566777777777776652 221 1 1233455666677777777777777664322222333333333322
Q ss_pred -cC---------------c---HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHH
Q 046631 627 -AG---------------L---VDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWG 687 (813)
Q Consensus 627 -~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 687 (813)
.+ + ..+|+..|+. +++-|=...-..+|...+..+... ...--.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~----------------li~~yP~S~ya~~A~~rl~~l~~~--la~~e~ 179 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSK----------------LVRGYPNSQYTTDATKRLVFLKDR--LAKYEL 179 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHH----------------HHHHCcCChhHHHHHHHHHHHHHH--HHHHHH
Confidence 11 0 0122222333 333333333344444433333111 000111
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCCC-CchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRNS-MPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
.+...|.+.|++.-|..-++.+++.-|+.. .......+..+|.+.|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 455668888999999999999999888751 13456678899999999999999877654
No 202
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.78 E-value=0.058 Score=52.24 Aligned_cols=56 Identities=20% Similarity=0.073 Sum_probs=35.9
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCCChhh----HHHHHHHHHhCCChHHHHHHHHHHHHC
Q 046631 452 IDMYAKSGLIKTARQIFEKNDSGDRDQAT----WNAMIAGYTQNGLLEEAFVAFRQMLEH 507 (813)
Q Consensus 452 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~A~~~~~~m~~~ 507 (813)
...+.+.|++++|.+.|+.+....|+... .-.++.+|.+.+++++|...|++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33445567777777777776655553321 133456677778888888888777764
No 203
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.77 E-value=0.033 Score=44.76 Aligned_cols=81 Identities=21% Similarity=0.233 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHhcCCCCChh
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGI-EPDAITFVAVLSACSYAG--------LVDEGLQIFDLMQQEYKIQPSTE 651 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 651 (813)
+-...|..+...+++.....+|+.+...|+ -|+..+|+.++.+.++.. ++-+.+.+++.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344567777777999999999999999999 999999999999876543 345678899999988 9999999
Q ss_pred HHHHHHHHHhc
Q 046631 652 HYCCVADMLGR 662 (813)
Q Consensus 652 ~~~~l~~~~~~ 662 (813)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.75 E-value=0.27 Score=52.00 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=26.0
Q ss_pred HHHHHHHHHHCCCc--HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHH
Q 046631 379 WNTMISAFVQNGLD--DEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQT 433 (813)
Q Consensus 379 ~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~ 433 (813)
++..=.+|.+-.+. -+.+.-+++|+++|-.|+...... .|+-.|.+.+|.++
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~---~~Ay~gKF~EAAkl 654 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLAD---VFAYQGKFHEAAKL 654 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHH---HHHhhhhHHHHHHH
Confidence 44444555444433 344455666777776676654322 23334444444443
No 205
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.74 E-value=0.0018 Score=50.11 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=11.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKE 675 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~ 675 (813)
+|+.++.+|.+.|++++|++.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444455555555555544444
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.099 Score=48.82 Aligned_cols=135 Identities=13% Similarity=0.069 Sum_probs=98.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcC-----CCCchhHHHHH
Q 046631 480 TWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYL-----LDQNVFVGTSL 554 (813)
Q Consensus 480 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l 554 (813)
..+.++..+.-.|.+.-.+.++++.++...+.++.....+.+.-.+.|+.+.|...++...+.. +....-+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4466777777888888899999999987766777888888888889999999999999777653 33333333334
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 046631 555 IDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAIT 616 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 616 (813)
...|.-++++..|...|.++.. .|+..-|.-.-+..-.|+..+|++.++.|.. ..|...+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccch
Confidence 4456677788888888887763 3566666666666667888888888888887 4454443
No 207
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.69 E-value=0.032 Score=55.56 Aligned_cols=130 Identities=14% Similarity=0.066 Sum_probs=94.7
Q ss_pred chHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 046631 377 VSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSA-ASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMY 455 (813)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (813)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++.-.....++...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 468888888888888999999999998553 2223333333222 33457777899999999987555557778888999
Q ss_pred HhcCCHHHHHHHHhhcCCCCCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 046631 456 AKSGLIKTARQIFEKNDSGDRDQ----ATWNAMIAGYTQNGLLEEAFVAFRQMLEH 507 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 507 (813)
.+.|+.+.|..+|++....-+.. ..|...+..=.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999866544433 37888888888889999998888888774
No 208
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.69 E-value=0.0011 Score=40.94 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=29.7
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHH
Q 046631 706 AKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVD 739 (813)
Q Consensus 706 ~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 739 (813)
++++++++|++ +..|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n--~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNN--AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCC--HHHHHHHHHHHHHCcCHHhhc
Confidence 67899999999 999999999999999999986
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.64 E-value=0.018 Score=56.96 Aligned_cols=258 Identities=12% Similarity=0.053 Sum_probs=155.5
Q ss_pred HHHHCCCcHHHHHHHHHHHHCCC---CCCHhHHHHHHHHHhcCCChHHHHHHHHHHH--Hh--CCCCc--chHHHHHHHH
Q 046631 385 AFVQNGLDDEGLMLVYEMQKQGF---MIDSVTVTALLSAASNLRNQDVGKQTHAYLL--RH--GIHFE--GMESYLIDMY 455 (813)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m~~~g~---~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~--~~--~~~~~--~~~~~l~~~~ 455 (813)
-+++.|+....+.+|+...+.|- ..=+..|..|.++|.-.+++++|.+++..=+ .. |-..- .....|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 36899999999999999998873 2223457777788888899999998875422 11 11111 2333456666
Q ss_pred HhcCCHHHHHHHHhhcCCC-----C--CChhhHHHHHHHHHhCCC--------------------hHHHHHHHHHHHH--
Q 046631 456 AKSGLIKTARQIFEKNDSG-----D--RDQATWNAMIAGYTQNGL--------------------LEEAFVAFRQMLE-- 506 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~li~~~~~~~~--------------------~~~A~~~~~~m~~-- 506 (813)
--.|.+++|.-...+-... + .....+-.+...|...|+ ++.|.+.|.+=.+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 6677787776554431110 1 122344445666655443 2334444443221
Q ss_pred --CCCC-CCHHHHHHHHHHhccCCChHHHHHHHHHHHH----cCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---
Q 046631 507 --HNVT-PNVVTIASVLPACNPMGNIELGKQLHGFSIR----YLL-DQNVFVGTSLIDMYSKSGVINYAANVFAKIP--- 575 (813)
Q Consensus 507 --~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--- 575 (813)
.|-. .--..|..+-+.|.-.|+++.|...|+.-.. .|- ......+..+..++.-.|+++.|.+.|+...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1111 0112455555666667888888888775332 232 1234566777788888888888888877543
Q ss_pred ----CC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046631 576 ----EK--NSVTYTTMILGYGQHGMSERALSLFRSMKGC----G-IEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQ 642 (813)
Q Consensus 576 ----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 642 (813)
.+ ...+..+|.+.|.-..++++|+.++.+-..- + .--....+.+|..++...|..++|+.+.+...+
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22 2345667777887778888888877654321 1 111234677788888888888888777655443
No 210
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.63 E-value=0.98 Score=46.11 Aligned_cols=117 Identities=21% Similarity=0.189 Sum_probs=76.1
Q ss_pred HhcCC-HHHHHHHHhhCC---CCCHhHHHHHHH----HHHh---cCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHH
Q 046631 559 SKSGV-INYAANVFAKIP---EKNSVTYTTMIL----GYGQ---HGMSERALSLFRSMKGCGIEPDAI----TFVAVLSA 623 (813)
Q Consensus 559 ~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~----~~~~---~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~a 623 (813)
-+.|. -++|.++++.+. ..|...-|.... .|.+ .....+-+.+-+-..+.|+.|-.+ .-+.|.+|
T Consensus 390 W~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 34444 677777777665 235444433321 2221 233455555555566678777443 34445544
Q ss_pred --HhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCc
Q 046631 624 --CSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGE 678 (813)
Q Consensus 624 --~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 678 (813)
+...|++.++.-+-.-+. .+.|++.+|..++-++....++++|.+++.+++.
T Consensus 470 EyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 456788888876654444 6789999999999999999999999999999875
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.17 Score=47.34 Aligned_cols=136 Identities=11% Similarity=-0.037 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC----CCCChhHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK----IQPSTEHYCCV 656 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l 656 (813)
..+.++..+.-.|.+.-.+.++++.++...+-+......|.+.-.+.|+.+.|..+|++..+..+ +.-...+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566677777788888888899988876666777777888888889999999999987765522 22223333344
Q ss_pred HHHHhccCCHHHHHHHHHHhCcC-CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 657 ADMLGRVGKVVEAYEFVKELGEE-GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
...|.-++++.+|...+.++... +..+...|+-.-+..-.|+...|.+..+.+.+..|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 45566677788888888776443 3333234444444445577888888888888888876
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.62 E-value=0.002 Score=49.80 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC----CCCC-CCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 680 GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM----DTRN-SMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 680 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
|+...+++.+...+...|++++|+..+++++++ +++. .....+..++.+|...|++++|.+++++..+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344558999999999999999999999999865 2221 1245677899999999999999999998764
No 213
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.60 E-value=0.026 Score=51.49 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=77.6
Q ss_pred HHHHhhcCCCCCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC-------------
Q 046631 465 RQIFEKNDSGDRDQATWNAMIAGYTQN-----GLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPM------------- 526 (813)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~------------- 526 (813)
...|+.......+-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 455666544467778888888888654 56666777888899999999999999999987542
Q ss_pred ---CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 046631 527 ---GNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGV 563 (813)
Q Consensus 527 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 563 (813)
.+-+-|..++++|...|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346788899999999999999999999998877664
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.60 E-value=0.025 Score=51.61 Aligned_cols=96 Identities=18% Similarity=0.340 Sum_probs=75.2
Q ss_pred HHHhhC--CCCCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------------
Q 046631 569 NVFAKI--PEKNSVTYTTMILGYGQ-----HGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYA-------------- 627 (813)
Q Consensus 569 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~-------------- 627 (813)
..|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 444444 35567777777777764 467777888888999999999999999999876442
Q ss_pred --CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC
Q 046631 628 --GLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGK 665 (813)
Q Consensus 628 --g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 665 (813)
.+.+-|++++++|... |+-||.+++..+++++++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 2346789999999887 999999999999999988775
No 215
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.54 E-value=0.0043 Score=41.31 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHH
Q 046631 684 EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSN 727 (813)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~ 727 (813)
.+|..+...+...|++++|+++++++++.+|++ +..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~--~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD--PEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC--HHHHHHhhh
Confidence 378888999999999999999999999999998 777766653
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.51 E-value=0.38 Score=48.98 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=94.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-------CHhHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046631 553 SLIDMYSKSGVINYAANVFAKIPEK-------NSVTYTTMILGYGQ---HGMSERALSLFRSMKGCGIEPDAITFVAVLS 622 (813)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 622 (813)
.++-.|-...+++...++.+.+... ....-....-++-+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3334466666666666666666532 11222233444555 6777888888777655555677777776666
Q ss_pred HHh----c-----cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHH----HHHHHH---HH-hCcCC---Ch
Q 046631 623 ACS----Y-----AGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVV----EAYEFV---KE-LGEEG---NV 682 (813)
Q Consensus 623 a~~----~-----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~~~~~---~~ 682 (813)
.|- . ....++|+..|.+.- .+.|+..+-..++.++...|.-. +..++. .. +...+ ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 542 1 123667777776554 55677555445555555555322 222222 11 11111 22
Q ss_pred HHHH--HHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 683 LEIW--GSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 683 ~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.+.| .+++.++.-.||.++|.+.+++++.+.|..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2244 578888899999999999999999998765
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.46 E-value=0.32 Score=45.82 Aligned_cols=53 Identities=13% Similarity=0.044 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC-chhHHHHHHHHHhcCCcHHHHH
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRNSM-PGYHVLLSNIYAEEGNWENVDK 740 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~ 740 (813)
.++..|.+.|.+..|..-++.+++.-|+... ......++..|.+.|..+.|..
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 3567788899999999999999999988511 1234667888989888874443
No 218
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.44 E-value=0.035 Score=45.57 Aligned_cols=96 Identities=19% Similarity=0.108 Sum_probs=77.7
Q ss_pred HHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC--chhHHHHHHHHHhc
Q 046631 656 VADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM--PGYHVLLSNIYAEE 732 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~~~l~~~~~~~ 732 (813)
-+-++...|+++.|++.|.+. ..-|..+.+||.-..+++-+|+.++|+.-+++++++.-+... ...|+.-+-+|...
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 345678899999999999875 455666668999999999999999999999999987543211 23466778899999
Q ss_pred CCcHHHHHHHHHHHHCCCc
Q 046631 733 GNWENVDKVRKEMRERGLR 751 (813)
Q Consensus 733 g~~~~A~~~~~~m~~~~~~ 751 (813)
|+-++|..-|+...+.|.+
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 9999999999999988753
No 219
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.41 E-value=1.4 Score=45.13 Aligned_cols=42 Identities=10% Similarity=0.034 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCC----CCCCHhhHHHHHHHh
Q 046631 195 NTIVSWYVKTERYVEAVRQFRMMLRMG----IRPSTISFVNVFPAL 236 (813)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~~~ 236 (813)
+..+..+...|++.++..++++|...= ..-+..+|+.++-.+
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlml 177 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLML 177 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Confidence 445666778888888888888876542 235777777754444
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.40 E-value=1.2 Score=44.45 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=74.7
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCH-HHHHHHHHHHhccCcHH
Q 046631 556 DMYSKSGVINYAANVFAKIPE--KNSVTYTTMILGYGQHGMSERALSLFRSMKGC-GIEPDA-ITFVAVLSACSYAGLVD 631 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-~~~~~ll~a~~~~g~~~ 631 (813)
.++.+.|++.++-.+++.+-+ |.+..+... .+.+.| +.++.-+++..+. .++||. .+...+..+-...|++.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 456667777777777766653 333333221 222333 3333333333221 145544 45666677777788888
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhc-cCCHHHHHHHHHHhCcCCChHHHHHH
Q 046631 632 EGLQIFDLMQQEYKIQPSTEHYCCVADMLGR-VGKVVEAYEFVKELGEEGNVLEIWGS 688 (813)
Q Consensus 632 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~ 688 (813)
.|..--+... ...|....|..|.++-.. .|+-.++..++-+....|..+ .|..
T Consensus 347 ~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP-aW~a 400 (531)
T COG3898 347 AARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP-AWTA 400 (531)
T ss_pred HHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC-cccc
Confidence 7777665555 457888888888887754 488888888888876666555 5543
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=96.37 E-value=0.068 Score=55.01 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=95.3
Q ss_pred cHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhc---------cCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC
Q 046631 629 LVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGR---------VGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 629 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 697 (813)
..+.|..+|.+......++|+ ...|..+..++.. .....+|.++.++. ...++.+.+...++.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 467788899988855467887 7777777666542 22455666776665 555666657777777778888
Q ss_pred CHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCc
Q 046631 698 HSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLR 751 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 751 (813)
+.+.|...|+++..++|+. +..+...+++..-.|+.++|.+.+++..+..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~--A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI--ASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred chhhHHHHHHHHhhcCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 8999999999999999999 999999999999999999999999997765543
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.22 Score=48.20 Aligned_cols=103 Identities=14% Similarity=0.069 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccC---CHHHHHHHHHHh-CcCCChHHH
Q 046631 611 EPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVG---KVVEAYEFVKEL-GEEGNVLEI 685 (813)
Q Consensus 611 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~~~~~~ 685 (813)
+-|...|..|..+|...|+.+.|..-|.... .+.|+ +..+..+..++..+. ...++.++++++ ..+|..+.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNAL---RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 3345567777777777777777777777666 33443 555566665554332 345666777765 455555556
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
...|...+...|++.+|...++.+++..|.+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 6777777777777777777777777777765
No 223
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.29 E-value=0.14 Score=43.76 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=31.1
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 624 CSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 624 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
..+.|++++|.+.|+.+..++-..| ...+...|+++|.+.|++++|...+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3456666666666666665543333 2445555666666666666666655553
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.21 E-value=0.12 Score=44.22 Aligned_cols=99 Identities=12% Similarity=0.005 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhC----cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC-chhHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKELG----EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM-PGYHVL 724 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~~~ 724 (813)
...+-.-+....+.|++++|.+.|+.+. ..+....+--.|+.++.+.+++++|...+++.+++.|.+.. +-.+..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3344445566678999999999999983 33344447778999999999999999999999999998621 223445
Q ss_pred HHHHHHhcCC---------------cHHHHHHHHHHHHC
Q 046631 725 LSNIYAEEGN---------------WENVDKVRKEMRER 748 (813)
Q Consensus 725 l~~~~~~~g~---------------~~~A~~~~~~m~~~ 748 (813)
.|-++..... ..+|...|+.+.+.
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 5555665554 55666667666643
No 225
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.19 E-value=0.77 Score=43.50 Aligned_cols=139 Identities=17% Similarity=0.169 Sum_probs=70.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc
Q 046631 586 ILGYGQHGMSERALSLFRSMKGCGI--EPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRV 663 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 663 (813)
+..-.+.|++++|.+.|+.+..... +-...+...++-++-+.+++++|+..+++..+.++-.|++. |...+.++..
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~- 118 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSY- 118 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHH-
Confidence 3344455666666666666665421 11223444555556666666666666666665554444421 2222222220
Q ss_pred CCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC---------------CchhHHHHHHH
Q 046631 664 GKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS---------------MPGYHVLLSNI 728 (813)
Q Consensus 664 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---------------~~~~~~~l~~~ 728 (813)
+..+..... ...-...|..-++.++..-|+.. .+.+-..+++.
T Consensus 119 ---------~~~i~~~~r-------------Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 119 ---------FFQIDDVTR-------------DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred ---------hccCCcccc-------------CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 00001233334444444444420 13445568889
Q ss_pred HHhcCCcHHHHHHHHHHHHC
Q 046631 729 YAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 729 ~~~~g~~~~A~~~~~~m~~~ 748 (813)
|.+.|.|..|..-+++|.+.
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc
Confidence 99999999999999999964
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.15 E-value=0.24 Score=52.39 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCCChhh-HH----------HHHHHHHhCCChHHHHHHHHHHH
Q 046631 450 YLIDMYAKSGLIKTARQIFEKNDSGDRDQAT-WN----------AMIAGYTQNGLLEEAFVAFRQML 505 (813)
Q Consensus 450 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~----------~li~~~~~~~~~~~A~~~~~~m~ 505 (813)
.++++....+++++|..+-++.++..+++.. |. .--.+|.+.|+-.+|..+++++.
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 3777788888888888888877765555432 11 11234445555555555555543
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.15 E-value=0.05 Score=55.85 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-h---hHHHHHHHHHhccCCHHHHHHHHHHhCc
Q 046631 613 DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-T---EHYCCVADMLGRVGKVVEAYEFVKELGE 678 (813)
Q Consensus 613 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 678 (813)
+...++.+..+|.+.|++++|+..|++.+ .+.|+ . .+|..++.+|...|++++|++.+++...
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34578888888888888888888888887 45776 3 3488888888888888888888888744
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.01 E-value=0.082 Score=50.31 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=69.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh----CcCCChHHHHHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL----GEEGNVLEIWGSLL 690 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~ 690 (813)
.|+.-+.. .+.|++.+|...|...++.|--.+ ....+-.|+.++...|++++|...|..+ +..|..++.+..|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45544443 456678888888877776531111 1555666788888888888887776655 55566667777777
Q ss_pred HHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 691 GSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 691 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.+....|+.++|...++++++.-|+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 78888888888888888888887775
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.09 Score=52.74 Aligned_cols=97 Identities=15% Similarity=0.078 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
..++..+.-+|.+.+++.+|++.-++. ..+|++.-....-+.+|...|+++.|+..|+++++++|.| ..+..-|..+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N--ka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN--KAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc--HHHHHHHHHH
Confidence 446778889999999999999988876 4555555477778899999999999999999999999999 7777777766
Q ss_pred HHhcCCcHHH-HHHHHHHHHC
Q 046631 729 YAEEGNWENV-DKVRKEMRER 748 (813)
Q Consensus 729 ~~~~g~~~~A-~~~~~~m~~~ 748 (813)
-.+..+.++. .++|..|-..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 6666555544 6788888754
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.84 E-value=0.15 Score=45.12 Aligned_cols=107 Identities=20% Similarity=0.174 Sum_probs=72.5
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHH
Q 046631 624 CSYAGLVDEGLQIFDLMQQEYKIQP--STEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSEL 701 (813)
Q Consensus 624 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 701 (813)
....|+.+.+...+.++...+.-.+ +... ..-.......++..- ..+...++..+...|++++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-----~~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-----LDALERLAEALLEAGDYEE 80 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-----HHHHHHHHHHHHHTT-HHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-----HHHHHHHHHHHHhccCHHH
Confidence 3456777788887777775542221 1111 112222333333331 2267778888889999999
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
|...+++++..+|-+ -..+..+..+|...|+..+|.+.|+++..
T Consensus 81 a~~~~~~~l~~dP~~--E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 81 ALRLLQRALALDPYD--EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC--HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999 88999999999999999999999998854
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.78 E-value=0.56 Score=50.54 Aligned_cols=159 Identities=15% Similarity=0.105 Sum_probs=95.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCChhH-H
Q 046631 585 MILGYGQHGMSERALSLFRSMKGCG-IEPDA-----ITFVAVLSACSY----AGLVDEGLQIFDLMQQEYKIQPSTEH-Y 653 (813)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~-~ 653 (813)
++....-.|+-+.+++++.+..+.+ +.-.. ..|..++..++. ..+.+.|.++++.+.+. -|+... .
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHH
Confidence 3444444555566666555544421 11111 123333333322 44677788888888755 476333 3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhCc-CC-----ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHH
Q 046631 654 CCVADMLGRVGKVVEAYEFVKELGE-EG-----NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSN 727 (813)
Q Consensus 654 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~ 727 (813)
..-+..+...|++++|++.+++... +. ... .+.-+.+.+....++++|...+.++.+.+.-. ...++...+-
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l-~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS-ka~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL-CYFELAWCHMFQHDWEEAAEYFLRLLKESKWS-KAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH-HHHHHHHHHHHHchHHHHHHHHHHHHhccccH-HHHHHHHHHH
Confidence 4555667778888888888886532 11 111 45566777778888888888888888754432 2445556677
Q ss_pred HHHhcCCc-------HHHHHHHHHHHHC
Q 046631 728 IYAEEGNW-------ENVDKVRKEMRER 748 (813)
Q Consensus 728 ~~~~~g~~-------~~A~~~~~~m~~~ 748 (813)
+|...|+. ++|.+++++....
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 77788888 7788887777543
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.77 E-value=0.088 Score=50.14 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=78.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh----CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC-chhHHHHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKEL----GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM-PGYHVLLS 726 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~~~l~ 726 (813)
.|+.-++. .+.|++.+|...|... +.....++.+..|+.++...|+++.|..+|..+..-.|+..- |..+.-|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655554 4677799999888775 444556678889999999999999999999999987776521 56788899
Q ss_pred HHHHhcCCcHHHHHHHHHHHHC
Q 046631 727 NIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 727 ~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.+..+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999999999999864
No 233
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.71 E-value=0.66 Score=38.59 Aligned_cols=140 Identities=17% Similarity=0.223 Sum_probs=78.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHH
Q 046631 590 GQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEA 669 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 669 (813)
.-.|..++..++..+.... .+..-++-+|--....-+-+-..+.++.+-+-|.+.| -.....++.+|.+.|...+
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-C~NlKrVi~C~~~~n~~se- 87 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-CGNLKRVIECYAKRNKLSE- 87 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---H-
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh-hcchHHHHHHHHHhcchHH-
Confidence 4467777888888777653 2222333333222223333444555555543333322 1112234444444443222
Q ss_pred HHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 670 YEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
..+.-+..+..+|+-+.-.+++..+...+..+ |.+..-++.+|.+.|+..++.+++.++=++|
T Consensus 88 ---------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~--p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 88 ---------------YVDLALDILVKQGKKDQLDKIYNELKKNEEIN--PEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred ---------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCC--HHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 44555677788899899999999888654444 8899999999999999999999999999888
Q ss_pred Cc
Q 046631 750 LR 751 (813)
Q Consensus 750 ~~ 751 (813)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 74
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.65 E-value=1.6 Score=43.23 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=62.1
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHh---cCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh----CcCCChH---HHHHH
Q 046631 620 VLSACSYAGLVDEGLQIFDLMQQE---YKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL----GEEGNVL---EIWGS 688 (813)
Q Consensus 620 ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~---~~~~~ 688 (813)
+.-++...|.+..|.+.-++..+- .|-.|. .....++.++|...|+.|.|+.-|++. ..-++.. .+...
T Consensus 212 maValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g 291 (518)
T KOG1941|consen 212 MAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDG 291 (518)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 334566666666666665554332 133332 556667888888888888877766653 2222211 12222
Q ss_pred HHHHHHH---hCC--HHHHHHHHHHHhc----CCCCCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 046631 689 LLGSCRL---HGH--SELAEVVAKKLLE----MDTRNSMPGYHVLLSNIYAEEGNWENVDKVRK 743 (813)
Q Consensus 689 l~~~~~~---~g~--~~~a~~~~~~~~~----~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 743 (813)
...+... +.. .=.|+++-+++++ ++.+...-..+-.++.+|...|.-++-..-+.
T Consensus 292 ~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ 355 (518)
T KOG1941|consen 292 AAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVV 355 (518)
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 2222111 111 1124444444433 33333223445567888877776665444333
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.95 Score=43.73 Aligned_cols=30 Identities=13% Similarity=0.009 Sum_probs=13.9
Q ss_pred cCCCCCCCchhHHHHHHHHHhcCCcHHHHHHH
Q 046631 711 EMDTRNSMPGYHVLLSNIYAEEGNWENVDKVR 742 (813)
Q Consensus 711 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 742 (813)
..+|++ ...-..++..|...|+.++|.+.+
T Consensus 230 aadPdd--~~aa~~lA~~~~~~g~~e~Ale~L 259 (304)
T COG3118 230 AADPDD--VEAALALADQLHLVGRNEAALEHL 259 (304)
T ss_pred HhCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 334444 444444444444445554444433
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.64 E-value=2.3 Score=41.04 Aligned_cols=195 Identities=20% Similarity=0.144 Sum_probs=133.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046631 548 VFVGTSLIDMYSKSGVINYAANVFAKIP-----EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLS 622 (813)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 622 (813)
...+......+...+.+..+...+.... ......+..+...+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455566666777777777777766543 23455666667777777778888888888877433331 22222222
Q ss_pred -HHhccCcHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhccCCHHHHHHHHHHhCc-CCC-hHHHHHHHHHHHHH
Q 046631 623 -ACSYAGLVDEGLQIFDLMQQEYKIQP----STEHYCCVADMLGRVGKVVEAYEFVKELGE-EGN-VLEIWGSLLGSCRL 695 (813)
Q Consensus 623 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~~l~~~~~~ 695 (813)
.+...|+++.+...+.+... ..| ....+......+...++.++|...+.+... .+. ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67788888888888888753 233 244444555556778888888888887633 333 24477888888888
Q ss_pred hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 696 HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 696 ~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.++.+.+...+..++...|.. ......++..+...|.++++...+.+..+.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDN--AEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCccc--HHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888999999999998888874 556666777777777788888888877754
No 237
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.58 E-value=0.17 Score=42.84 Aligned_cols=97 Identities=14% Similarity=0.226 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 046631 548 VFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYA 627 (813)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 627 (813)
..++.++|.++++.|+++....+++..-..|+. +-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 345666666777777766666666544321110 0000000 111234678888888888888888
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 046631 628 GLVDEGLQIFDLMQQEYKIQPSTEHYCCVADML 660 (813)
Q Consensus 628 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 660 (813)
|++..|.++++...+.|++.-+...|..|+.-.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 888888888888888888766677776666543
No 238
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.54 E-value=3.1 Score=42.04 Aligned_cols=103 Identities=18% Similarity=0.158 Sum_probs=64.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChH
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIE 530 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 530 (813)
.+.-+...|+...|.++-.+.. -|+...|-..+.+|+..++|++...+-.. +-.+..|-.++.+|.+.|...
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk--v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK--VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC--CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 3445556677777777777666 56777777777777777777666554321 112355666777777777766
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 046631 531 LGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVF 571 (813)
Q Consensus 531 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 571 (813)
+|..+...+ .+..-+.+|.++|++.+|.+.-
T Consensus 255 eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 255 EASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 666665541 1345566677777776665543
No 239
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=4.3 Score=45.05 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=27.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHH
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFV 499 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 499 (813)
++..+.+..+.+.+..+.+... +-+...|-.++..+++.+..+...+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g--~~~p~l~~~~L~yF~~~~~i~~~~~ 757 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG--KEDPSLWLHALKYFVSEESIEDCYE 757 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC--ccChHHHHHHHHHHhhhcchhhHHH
Confidence 4555556666666666666655 3355566666666666665444333
No 240
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.22 E-value=0.35 Score=47.49 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=53.5
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCC--CC--ChhHHHHHHHHHhccCCHHHHHHHHHHh-------CcCCChH----HH
Q 046631 621 LSACSYAGLVDEGLQIFDLMQQEYKI--QP--STEHYCCVADMLGRVGKVVEAYEFVKEL-------GEEGNVL----EI 685 (813)
Q Consensus 621 l~a~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~----~~ 685 (813)
..|....+.++++++.|+...+.-.- +| ...++..|...|.+..++++|.-+..+. ...+... .+
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ 208 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS 208 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence 33444444555555555554432110 11 1345555556666655555555443332 1111110 02
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcC----CCCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEM----DTRNSMPGYHVLLSNIYAEEGNWENVDKVRKE 744 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (813)
..-+.-+++..|....|.+..+++.++ +.....+.....++++|...|+.|.|..-|+.
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 233344555555555555554444322 11111122333455666666655555544443
No 241
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.19 E-value=0.19 Score=42.57 Aligned_cols=94 Identities=14% Similarity=0.004 Sum_probs=60.8
Q ss_pred hhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchh---hhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHC
Q 046631 330 DVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPV---IVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQ 405 (813)
Q Consensus 330 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 405 (813)
..++..++.++++.|+++....+....-. ....... ...+.-..|+..+..+++.+|+.+|++..|+++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44555666666666666655555544332 1111100 1122235688888999999999999999999999987654
Q ss_pred -CCCCCHhHHHHHHHHHhc
Q 046631 406 -GFMIDSVTVTALLSAASN 423 (813)
Q Consensus 406 -g~~pd~~t~~~ll~~~~~ 423 (813)
+++.+..+|..|+.-+..
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 677778888888876543
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.13 E-value=0.2 Score=44.25 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hcCCCCChhH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQ----EYKIQPSTEH 652 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 652 (813)
+...++..+...|++++|+.+.+++.... +-|...|..++.++...|+..+|.+.|+.+.+ ++|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445556666677777777777776632 33455677777777777777777776665532 3477776544
No 243
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.12 E-value=0.19 Score=44.90 Aligned_cols=92 Identities=14% Similarity=0.012 Sum_probs=71.2
Q ss_pred HHHHhccCCHHHHHHHHHHhC-cCCCh-----HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 046631 657 ADMLGRVGKVVEAYEFVKELG-EEGNV-----LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA 730 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 730 (813)
++-+.+.|++++|..-|.... .-|.. .-.|..-..++.+.+.++.|+.-..++++++|.. -.+..--+.+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty--~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY--EKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh--HHHHHHHHHHHH
Confidence 455667888888887776651 11211 1156666778888999999999999999999987 667777788999
Q ss_pred hcCCcHHHHHHHHHHHHCCC
Q 046631 731 EEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 731 ~~g~~~~A~~~~~~m~~~~~ 750 (813)
+..++++|++-|+++.+..+
T Consensus 180 k~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCc
Confidence 99999999999999997643
No 244
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=6.7 Score=43.29 Aligned_cols=27 Identities=7% Similarity=0.206 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 046631 378 SWNTMISAFVQNGLDDEGLMLVYEMQK 404 (813)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (813)
.-..|+..|...++++.|+.++-..++
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccC
Confidence 344588888999999999988877653
No 245
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=7.7 Score=43.24 Aligned_cols=132 Identities=15% Similarity=0.128 Sum_probs=80.8
Q ss_pred CChhHHHHHHcccCCCCcccHHHHH----HHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHH
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIV----SWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVY 249 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 249 (813)
..++.|..+-+.-.. |..+-..+. .-+-+.|++++|.+.|-+-... +.|. .+|.-+........--.++
T Consensus 348 ~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YL 420 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYL 420 (933)
T ss_pred hhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHH
Confidence 555666665544332 222222233 3345688999998888765542 3332 3455555555666667778
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcch--HHHHHHHHHhCCCchHHHHH
Q 046631 250 GLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEV--WNTMIGGYVQNNHPVEAIEL 316 (813)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~ 316 (813)
+.+.+.|.. +..--..|+.+|.+.++.+.-.+..+... ...+. ....+..+.+.+-.++|..+
T Consensus 421 e~L~~~gla---~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 421 EALHKKGLA---NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHcccc---cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 888888875 66666788899999999888888877765 22222 34455555555555555444
No 246
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.92 E-value=0.88 Score=39.83 Aligned_cols=91 Identities=19% Similarity=0.145 Sum_probs=64.8
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHH
Q 046631 622 SACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 622 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 700 (813)
..-...++.+++..++..+. -+.|. ...-..-+..+.+.|+|++|..+++++...+.....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 34457789999999998887 66886 556666777888999999999999999655533325566666666554444
Q ss_pred HHHHHHHHHhcCCCC
Q 046631 701 LAEVVAKKLLEMDTR 715 (813)
Q Consensus 701 ~a~~~~~~~~~~~p~ 715 (813)
.=.....++++.+++
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 444556667777765
No 247
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.87 E-value=5.3 Score=40.93 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=107.7
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHH-HH
Q 046631 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCG-IEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHY-CC 655 (813)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~ 655 (813)
-...|..+++.-.+..-.+.|..+|-+..+.| +.++...+++++.-+ ..|+...|..+|+.-... .||...| .-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 35578888888888888999999999999988 567777888888755 467888899999876654 4665444 45
Q ss_pred HHHHHhccCCHHHHHHHHHHh----CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 656 VADMLGRVGKVVEAYEFVKEL----GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
.+.-+.+-++-+.|..+|+.. ... ....+|..++.--..-|+...+..+-+++.+.-|+. ...-+.+
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~-q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe--n~~evF~ 542 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKT-QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE--NLIEVFT 542 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHh-hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH--hHHHHHH
Confidence 566677889999999999854 222 233489999998888999999999989999999986 4444444
No 248
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.77 E-value=9.1 Score=43.11 Aligned_cols=134 Identities=9% Similarity=0.024 Sum_probs=67.9
Q ss_pred HHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--chHHHHHHHHHhcCCHHH
Q 046631 386 FVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE--GMESYLIDMYAKSGLIKT 463 (813)
Q Consensus 386 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 463 (813)
..+.|++..+.++...+...-+ ..-..|..+...+. ....+ ++-..+.+..-.|- .+....+..+.+.+++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAV---QVTNFIRANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHH
Confidence 3567777777777766643211 11222322222111 11222 33333444332222 455556666777788887
Q ss_pred HHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCC
Q 046631 464 ARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGN 528 (813)
Q Consensus 464 A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 528 (813)
... |..-. ..+...--....+....|+.++|......+-..| .........++..+.+.|.
T Consensus 118 ~~~-~~~~~--p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 118 LLA-FSPEK--PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHH-hcCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 777 33222 2244444445667777888877777776665544 2233444555555554443
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.73 E-value=2.2 Score=40.49 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=34.7
Q ss_pred HhcCCHHHHHHHHhhcCCCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 046631 456 AKSGLIKTARQIFEKNDSGDR----DQATWNAMIAGYTQNGLLEEAFVAFRQMLEH 507 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 507 (813)
.+.|++++|.+.|+.+....| ...+--.++-++-+.+++++|+..+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 456777777777777765555 2223444566677778888888887777664
No 250
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.69 E-value=3.4 Score=43.09 Aligned_cols=147 Identities=10% Similarity=-0.082 Sum_probs=77.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhH
Q 046631 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP---DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS--TEH 652 (813)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 652 (813)
...+|..++..+.+.|+++.|...+.++...+... .......-+......|+..+|+..++...+. .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 45678888888888888888888888887643221 2233344455556778888888888777762 11111 111
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHh------CCHHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLH------GHSELAEVVAKKLLEMDTRNSMPGYHVLLS 726 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~ 726 (813)
...+...+.. ..+.....-..-........++..+..-+... ++.+.+...|+++.+..|.. ...+..++
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~k~~~~~a 299 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW--EKAWHSWA 299 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH--HHHHHHHH
Confidence 1111111100 00000000000000000111344444444444 67888899999999998887 55666555
Q ss_pred HHH
Q 046631 727 NIY 729 (813)
Q Consensus 727 ~~~ 729 (813)
..+
T Consensus 300 ~~~ 302 (352)
T PF02259_consen 300 LFN 302 (352)
T ss_pred HHH
Confidence 544
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.65 E-value=4.4 Score=38.93 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-HhHHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHH
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIPE--KN-SVTYTTMIL-GYGQHGMSERALSLFRSMKGCGIEP----DAITFVAV 620 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l 620 (813)
..+......+...+.+..+.+.+..... ++ ......... .+...|+++.|...+.+... ..| ....+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 173 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHh
Confidence 3444555555566666777777766553 21 122333333 67888889999998888865 333 22344444
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHhCc-CCChHHHHHHHHHHHHHhC
Q 046631 621 LSACSYAGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVADMLGRVGKVVEAYEFVKELGE-EGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 621 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 697 (813)
...+...++.+.+...+...... .++ ...+..+...+...+.+++|...+..... .+.....+..+...+...+
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 44466788899999998888754 343 67788888888889999999988887733 3332335566666666667
Q ss_pred CHHHHHHHHHHHhcCCCC
Q 046631 698 HSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~ 715 (813)
+.+.+...+.+.+...|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 251 RYEEALEALEKALELDPD 268 (291)
T ss_pred CHHHHHHHHHHHHHhCcc
Confidence 799999999999888875
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=0.47 Score=46.12 Aligned_cols=162 Identities=11% Similarity=-0.040 Sum_probs=113.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHH----HHHHHHhccCCH
Q 046631 591 QHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYC----CVADMLGRVGKV 666 (813)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~ 666 (813)
-+|+..+|-..++++.+. .+.|...+.-.-++|...|+.+.-...++++... -.||...|. .+.-++..+|.+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 578888999999999885 5667778888888999999999988888888743 356654443 445566799999
Q ss_pred HHHHHHHHHhC-cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC--chhHHHHHHHHHhcCCcHHHHHHHH
Q 046631 667 VEAYEFVKELG-EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM--PGYHVLLSNIYAEEGNWENVDKVRK 743 (813)
Q Consensus 667 ~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 743 (813)
++|++.-++.. .++...=+..++...+...|++.++.++..+.-..-.+.+. ...|-..+-.|.+.+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999988873 33333223356677778889999999987765433222111 1223345556778899999999998
Q ss_pred HHHHCCCccCCc
Q 046631 744 EMRERGLRKEVG 755 (813)
Q Consensus 744 ~m~~~~~~~~~~ 755 (813)
.=.-+...++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 754444444443
No 253
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.54 E-value=0.077 Score=32.70 Aligned_cols=32 Identities=31% Similarity=0.262 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
+|..++..+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 56677777777777777777777777777753
No 254
>PRK15331 chaperone protein SicA; Provisional
Probab=94.51 E-value=0.98 Score=39.76 Aligned_cols=93 Identities=9% Similarity=0.051 Sum_probs=58.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccC
Q 046631 586 ILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVG 664 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 664 (813)
..-+...|++++|..+|+-+.-.+ .-+..-+..|..+|...+++++|+..|.....- .+ |+..+-..+.+|...|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l---~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL---LKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccCCCCccchHHHHHHHhC
Confidence 344456777777777777776632 122333445555556677788888777666532 23 3555556777778888
Q ss_pred CHHHHHHHHHHhCcCCCh
Q 046631 665 KVVEAYEFVKELGEEGNV 682 (813)
Q Consensus 665 ~~~~A~~~~~~~~~~~~~ 682 (813)
+.+.|..-|+....+|..
T Consensus 120 ~~~~A~~~f~~a~~~~~~ 137 (165)
T PRK15331 120 KAAKARQCFELVNERTED 137 (165)
T ss_pred CHHHHHHHHHHHHhCcch
Confidence 888888777776555443
No 255
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.43 E-value=6.8 Score=40.20 Aligned_cols=125 Identities=15% Similarity=0.171 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHH
Q 046631 548 VFVGTSLIDMYSKSGVINYAANVFAKIPE-----KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAIT-FVAVL 621 (813)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll 621 (813)
..+|..+++.-.+..-++.|..+|-++.+ +++..+++++.-++. |+...|..+|+--... .||... ..-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 45688888888888889999999998763 578889999987765 7788999999876663 455543 34556
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHhC
Q 046631 622 SACSYAGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVADMLGRVGKVVEAYEFVKELG 677 (813)
Q Consensus 622 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 677 (813)
.-+...++-..|..+|+....+ +..+ ...|..+++--..-|++..+..+-+++.
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 6677889999999999976653 2333 6788899998889999998888877763
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.38 E-value=2.4 Score=44.28 Aligned_cols=101 Identities=10% Similarity=0.082 Sum_probs=69.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcC--CChH-HHHHHHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEE--GNVL-EIWGSLLGS 692 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~~~l~~~ 692 (813)
+-..+..++.+.|+.++|++.+++|.+.+...-.......|+.+|...+.+.++..++.+-... |... -.|...+--
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3345666777899999999999999876322223567778999999999999999998886432 2233 245554444
Q ss_pred HHHhCCH---------------HHHHHHHHHHhcCCCCC
Q 046631 693 CRLHGHS---------------ELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 693 ~~~~g~~---------------~~a~~~~~~~~~~~p~~ 716 (813)
.+..+|. ..|.+.+.++++.+|..
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 4434431 23667888999988885
No 257
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.34 E-value=8.9 Score=41.14 Aligned_cols=182 Identities=13% Similarity=0.090 Sum_probs=126.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIPEK---NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSA 623 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 623 (813)
+...|+..++.-.+.|+.+.+.-+|++..-| -...|--.+.-....|+.+-|..++....+--.+-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567777788888899999999999988755 3456666666666669999998888877765444444443333334
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHH---HHHHHhC---cCCChHH-HHHHHH-HHHH
Q 046631 624 CSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAY---EFVKELG---EEGNVLE-IWGSLL-GSCR 694 (813)
Q Consensus 624 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~---~~~~~~~-~~~~l~-~~~~ 694 (813)
+-..|+++.|..+++.+.+++ |+ ...-..-+....+.|..+.+. +++.... ..+.... .+-... -.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 567899999999999998762 76 555556677788999999988 5555542 2222211 111111 1223
Q ss_pred HhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcC
Q 046631 695 LHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEG 733 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g 733 (813)
-.++.+.|..++.++.+..|++ ...|..+.+.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~--k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDC--KVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCcc--HHHHHHHHHHHHhCC
Confidence 3478999999999999999998 788887777766655
No 258
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.33 E-value=0.066 Score=33.06 Aligned_cols=32 Identities=25% Similarity=0.168 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 684 EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
.+|..++.++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 36778888888888888888888888888876
No 259
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=1.9 Score=41.79 Aligned_cols=179 Identities=13% Similarity=0.069 Sum_probs=120.8
Q ss_pred HHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 046631 565 NYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEY 644 (813)
Q Consensus 565 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 644 (813)
+...+++++...+....--.-.......|++.+|..+|+......- -+......++.++...|+.+.|..++..+-..
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~- 197 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQ- 197 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCccc-
Confidence 3455666666655333333344566788999999999999988532 22445667888999999999999999876432
Q ss_pred CCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHH
Q 046631 645 KIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVL 724 (813)
Q Consensus 645 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~ 724 (813)
--.........-+..+.+.....+...+..+...+|+..+.-..|...+...|+.+.|.+.+-.++..+........-..
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 11111222334567777788777777888888888877778888999999999999998887777766544322555566
Q ss_pred HHHHHHhcCCcHH-HHHHHHHH
Q 046631 725 LSNIYAEEGNWEN-VDKVRKEM 745 (813)
Q Consensus 725 l~~~~~~~g~~~~-A~~~~~~m 745 (813)
+..++...|.-+. +..++++|
T Consensus 278 lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 278 LLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHHhcCCCCHHHHHHHHHH
Confidence 6666666664433 33344443
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.08 E-value=1.5 Score=36.35 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=21.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046631 590 GQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQ 641 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 641 (813)
+..|+.+.|++.|.+.+.. .+-....|+.-..++.-.|+.++|+.-+++..
T Consensus 54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 3344444444444444432 11223344444444444444444444444443
No 261
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.99 E-value=0.53 Score=44.67 Aligned_cols=99 Identities=13% Similarity=0.235 Sum_probs=78.6
Q ss_pred HHHHHhhCC--CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----------
Q 046631 567 AANVFAKIP--EKNSVTYTTMILGYGQH-----GMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAG----------- 628 (813)
Q Consensus 567 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g----------- 628 (813)
.+..|..+. +.|-.+|-+++..+... +.++-....++.|.+-|+.-|..+|..|+..+=+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345565555 56778888888877643 566777778899999999999999999998775433
Q ss_pred -----cHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCH
Q 046631 629 -----LVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKV 666 (813)
Q Consensus 629 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 666 (813)
.-+-++.++++|... |+.||-++-..|++++++.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 224588999999887 9999999999999999999864
No 262
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.91 E-value=0.61 Score=44.25 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=79.7
Q ss_pred HHHHHhhcCCCCCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC-----------
Q 046631 464 ARQIFEKNDSGDRDQATWNAMIAGYTQN-----GLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMG----------- 527 (813)
Q Consensus 464 A~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----------- 527 (813)
..+.|......++|-.+|-+.+..|... +..+=....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 3456666666667888888888777554 456666677888999999999999999999875532
Q ss_pred -----ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 046631 528 -----NIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVI 564 (813)
Q Consensus 528 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 564 (813)
.-+-+..++++|...|+-||..+-..|++++++.+..
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3356788999999999999999999999999888763
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.89 E-value=0.14 Score=33.93 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=21.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSL 689 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l 689 (813)
++..+...|.+.|++++|+++++++ ...|+.+.+|..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 4455666666666666666666664 4455555555444
No 264
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.79 E-value=4.1 Score=36.91 Aligned_cols=91 Identities=15% Similarity=0.001 Sum_probs=54.6
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhC
Q 046631 622 SACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 622 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 697 (813)
..+...+++++|...++..... ..| ..+--.|.......|.+|+|+..++....+.-.......-+..+...|
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg 173 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcC
Confidence 3556677777777776655522 222 222234556666777777777777776554433323344456666677
Q ss_pred CHHHHHHHHHHHhcCCCC
Q 046631 698 HSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~ 715 (813)
+-++|...|+++++.+++
T Consensus 174 ~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 174 DKQEARAAYEKALESDAS 191 (207)
T ss_pred chHHHHHHHHHHHHccCC
Confidence 777777777777776644
No 265
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.77 E-value=2.6 Score=36.85 Aligned_cols=41 Identities=15% Similarity=0.273 Sum_probs=19.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC-CChhhHHHHHHHHHhC
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGD-RDQATWNAMIAGYTQN 491 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~ 491 (813)
++..+.+.+........++.+.... .+...+|.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 3444444445555555555433222 2344555556666554
No 266
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.76 E-value=10 Score=44.06 Aligned_cols=110 Identities=17% Similarity=0.039 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVAD 658 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~ 658 (813)
.|.+...-+...+.+++|.-+|+..-+ ..-.+.+|...|+|.+|..+..++.. .-+ ..+-..|+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~----~~de~~~~a~~L~s 1007 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE----GKDELVILAEELVS 1007 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC----CHHHHHHHHHHHHH
Confidence 344444444556677777666655332 22345567777777777777665531 112 222345666
Q ss_pred HHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 046631 659 MLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKL 709 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 709 (813)
-+...++.-+|-++..+...++... ...+++...+++|.++....
T Consensus 1008 ~L~e~~kh~eAa~il~e~~sd~~~a------v~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEYLSDPEEA------VALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHcccchhHHHHHHHHhcCHHHH------HHHHhhHhHHHHHHHHHHhc
Confidence 6777777777777766654444332 22334444566776665543
No 267
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=13 Score=40.96 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=51.0
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHH
Q 046631 452 IDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIEL 531 (813)
Q Consensus 452 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 531 (813)
+.-+...|+..+|.++-.+.. -||-..|---+.+++..++|++-+++-+.+. .+.-|.....+|.+.|+.++
T Consensus 691 v~~li~~g~~k~a~ql~~~Fk--ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFK--IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHHHccchHHHHHHHHhcC--CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHH
Confidence 333445556666666655555 4555555555556666666655444433322 13334445555555555555
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046631 532 GKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANV 570 (813)
Q Consensus 532 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 570 (813)
|..++..... +.-.+.+|.+.|++.+|.++
T Consensus 763 A~KYiprv~~---------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 763 AKKYIPRVGG---------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HhhhhhccCC---------hHHHHHHHHHhccHHHHHHH
Confidence 5555433211 11344555555555555443
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=1.8 Score=42.33 Aligned_cols=154 Identities=13% Similarity=0.012 Sum_probs=109.4
Q ss_pred HhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHhccCcHH
Q 046631 559 SKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAV----LSACSYAGLVD 631 (813)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----l~a~~~~g~~~ 631 (813)
.-.|++.+|...++++.+ .|..+++--=.+|...|+...-...+++..-. ..||...|..+ .-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346777788888888774 48889999899999999999999999998864 35555433332 33456789999
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCCh---HHHHHH--HHHHHHHhCCHHHHHHH
Q 046631 632 EGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELGEEGNV---LEIWGS--LLGSCRLHGHSELAEVV 705 (813)
Q Consensus 632 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~--l~~~~~~~g~~~~a~~~ 705 (813)
+|.+.-++.. .+.| |.-..-.+...+...|++.++.++..+-...-.. ....|. ..-.+...+.++.|+++
T Consensus 193 dAEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999887776 6666 4666778889999999999999998876432221 112221 22233455789999999
Q ss_pred HHHHh--cCCCCC
Q 046631 706 AKKLL--EMDTRN 716 (813)
Q Consensus 706 ~~~~~--~~~p~~ 716 (813)
|++-+ +++.++
T Consensus 270 yD~ei~k~l~k~D 282 (491)
T KOG2610|consen 270 YDREIWKRLEKDD 282 (491)
T ss_pred HHHHHHHHhhccc
Confidence 97644 445555
No 269
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.71 E-value=5.4 Score=44.85 Aligned_cols=67 Identities=19% Similarity=0.113 Sum_probs=43.0
Q ss_pred CcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCh-------HHHHHHHHHHHHhCC
Q 046631 375 DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQ-------DVGKQTHAYLLRHGI 442 (813)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~ 442 (813)
|...-.++|-.+.++|++++|.++..+.... .......|...+..+....+- +....-|....+...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 4445557888899999999999999655543 555667778888888775332 234444555554444
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.71 E-value=2 Score=44.81 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhC-cCC--ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKELG-EEG--NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM 712 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 712 (813)
..+-..+..++.+.|+.+||++.++++. +.| +...+...|+.++...+.+.++..++.+.-+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 3344457777778888888888888873 334 23347778888888888888888888876544
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.60 E-value=3.8 Score=44.30 Aligned_cols=117 Identities=19% Similarity=0.132 Sum_probs=70.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHhccCcHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCCHHHH
Q 046631 593 GMSERALSLFRSMKGCGIEPDAITFVAVL-SACSYAGLVDEGLQIFDLMQQEYKIQP--STEHYCCVADMLGRVGKVVEA 669 (813)
Q Consensus 593 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 669 (813)
.+.+.|.++++.+.+ .-|+...|...- +.+...|++++|++.|++....-.--| ....+.-++..+.-.++|++|
T Consensus 247 ~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 456777788888777 466666554443 345667888888888876543101111 233445566667778888888
Q ss_pred HHHHHHhCcCC-ChHHHHHHHHHHH-HHhCCH-------HHHHHHHHHHhc
Q 046631 670 YEFVKELGEEG-NVLEIWGSLLGSC-RLHGHS-------ELAEVVAKKLLE 711 (813)
Q Consensus 670 ~~~~~~~~~~~-~~~~~~~~l~~~~-~~~g~~-------~~a~~~~~~~~~ 711 (813)
.+.+..+.... -...+|..+..+| ...|+. ++|...++++-.
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88888875443 3332444444433 345666 666666666543
No 272
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.00 E-value=3.8 Score=43.58 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=68.5
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046631 555 IDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGL 634 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~ 634 (813)
.+...++|+++.|.++.++.. +...|..|......+|+++-|.+.|++... |..|+-.|...|+.+.-.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 455677888888888876655 566888888888888888888888887553 556666667777776666
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 635 QIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 635 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
++.+..... | -++....++.-.|+.++..+++.+.
T Consensus 394 kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 394 KLAKIAEER-G------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 666555433 2 1444455555567777777666654
No 273
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.98 E-value=23 Score=41.48 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhcc
Q 046631 550 VGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAIT--FVAVLSACSYA 627 (813)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~a~~~~ 627 (813)
+|.+..+.+...+.+++|.-+|+..-+ ..-.+.+|...|+|.+|+.+..+|.. .-|... -..|..-+...
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHc
Confidence 344445555667888888888876543 22346788889999999998888653 233332 25677778888
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCc
Q 046631 628 GLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGE 678 (813)
Q Consensus 628 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 678 (813)
++.-+|-++..+.... ....+..|++...|++|..+......
T Consensus 1013 ~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred ccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 9988888887766533 23456778888999999988877643
No 274
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.78 E-value=4.7 Score=35.18 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=20.0
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhc
Q 046631 112 SVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYST 154 (813)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (813)
.++..+...+.......+++.+...+ ..+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444444444555555544443 2344455555555554
No 275
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.69 E-value=8.9 Score=36.06 Aligned_cols=197 Identities=14% Similarity=0.082 Sum_probs=93.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHH
Q 046631 418 LSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEA 497 (813)
Q Consensus 418 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 497 (813)
-.++....+++.+...+....+.--..... +-....++.|.-+.+++....--+..|+--...|..+|.++.|
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrsl-------fhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSL-------FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 344555666777666555543221100000 1112234444445555543222334566667778888888877
Q ss_pred HHHHHHHHH--CCCCCCHH--HHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 046631 498 FVAFRQMLE--HNVTPNVV--TIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAK 573 (813)
Q Consensus 498 ~~~~~~m~~--~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (813)
-..+++.-+ .++.|+.. .|.--+......++...+. ..+..+-..|.+...+++|-..|.+
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~---------------el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF---------------ELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH---------------HHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 777666543 23445432 1211111111222222222 2334444556666666666665554
Q ss_pred CCC--------CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046631 574 IPE--------KN-SVTYTTMILGYGQHGMSERALSLFRSMKGCGI---EPDAITFVAVLSACSYAGLVDEGLQIF 637 (813)
Q Consensus 574 ~~~--------~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~a~~~~g~~~~a~~~~ 637 (813)
-.. ++ -..|-..|-.|....++..|...++.--+.+- .-+..+...|+.+| ..|+.+++..++
T Consensus 176 e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 176 EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 331 11 12344445555556677777777776443221 12234666666665 455555555443
No 276
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.69 E-value=1.9 Score=45.79 Aligned_cols=76 Identities=29% Similarity=0.364 Sum_probs=34.1
Q ss_pred HHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHH
Q 046631 658 DMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWEN 737 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 737 (813)
++..+.|+++.|.++.++.. .+..|..|+.....+|+++.|++.++++ .+ +.-|.-+|.-.|+.+.
T Consensus 326 eLAl~lg~L~~A~~~a~~~~----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-----~d-----~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD----DPEKWKQLGDEALRQGNIELAEECYQKA-----KD-----FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS----THHHHHHHHHHHHHTTBHHHHHHHHHHC-----T------HHHHHHHHHHCT-HHH
T ss_pred HHHHhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHHcCCHHHHHHHHHhh-----cC-----ccccHHHHHHhCCHHH
Confidence 34445555555554444332 1225555555555555555555555542 11 3333344555555544
Q ss_pred HHHHHHHHHH
Q 046631 738 VDKVRKEMRE 747 (813)
Q Consensus 738 A~~~~~~m~~ 747 (813)
-.++-+....
T Consensus 392 L~kl~~~a~~ 401 (443)
T PF04053_consen 392 LSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 277
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.68 E-value=5.4 Score=33.47 Aligned_cols=64 Identities=11% Similarity=0.091 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKI 646 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 646 (813)
-....+..+..+|+-++-.++++++.+. -++++.....+..||.+.|+..++.+++.++-+. |+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3444556666677777777777766542 3566666666777777777777777777666655 54
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.61 E-value=4.7 Score=35.45 Aligned_cols=66 Identities=11% Similarity=-0.026 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHh
Q 046631 425 RNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQ 490 (813)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~ 490 (813)
++.+.+..++..+.-..+....+...-...+...|++.+|..+|+++....|....-.+|+..|..
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 344444444444444433333333334444556666666666666665444444444444444433
No 279
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.55 E-value=9.8 Score=36.17 Aligned_cols=243 Identities=17% Similarity=0.175 Sum_probs=132.7
Q ss_pred CCHHHHHHHHhhcCCCCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHhccCCC
Q 046631 459 GLIKTARQIFEKNDSGDR-----DQATWNAMIAGYTQNGLLEEAFVAFRQMLE---HNV--TPNVVTIASVLPACNPMGN 528 (813)
Q Consensus 459 g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~--~p~~~t~~~ll~~~~~~~~ 528 (813)
...++|..-|++....++ ...+.-.+|..+.+.+++++.++.|.+|.. ..+ .-+..+.++++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 345566666665433222 222344567777777777777777777653 111 1234456666666665555
Q ss_pred hHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------C-------CHhHHHHHHHH
Q 046631 529 IELGKQLHGFSIRY-----LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--------K-------NSVTYTTMILG 588 (813)
Q Consensus 529 ~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~~ 588 (813)
.+.-..+++.-.+. +-..=-.+-+.|...|...|++.+..++++++.. . =...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 55555555432221 1011111234556667777777777777766541 0 13466667888
Q ss_pred HHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHh-----ccCcHHHHHHHHHHHHHhcCCC--CC---hhHHHHHH
Q 046631 589 YGQHGMSERALSLFRSMKGCGI-EPDAITFVAVLSACS-----YAGLVDEGLQIFDLMQQEYKIQ--PS---TEHYCCVA 657 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~--p~---~~~~~~l~ 657 (813)
|..+++-.+...+|++.+.-.- -|.+ ....+|+-|. +.|.+++|..-|-++-+.|.-. |. ---|..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 8888888888888887765322 2333 3345566553 5678888876555554443222 22 23466677
Q ss_pred HHHhccCC----HHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 046631 658 DMLGRVGK----VVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKK 708 (813)
Q Consensus 658 ~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 708 (813)
+++.+.|- -.+|.- .+..|... +...|+.+|. .++..+.+++++.
T Consensus 280 NMLmkS~iNPFDsQEAKP----yKNdPEIl-AMTnlv~aYQ-~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAKP----YKNDPEIL-AMTNLVAAYQ-NNDIIEFERILKS 328 (440)
T ss_pred HHHHHcCCCCCcccccCC----CCCCHHHH-HHHHHHHHHh-cccHHHHHHHHHh
Confidence 77777762 122210 12233344 6677787776 3566665555543
No 280
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.11 E-value=20 Score=38.67 Aligned_cols=131 Identities=9% Similarity=0.045 Sum_probs=86.2
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHH
Q 046631 69 TTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSL 148 (813)
Q Consensus 69 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (813)
+-..|..+|.--.+......+...+..+...- |- --.-|.....-=.+.|..+.+.++|++-+.. ++.+...|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl-~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PL-CYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC--cc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 34467666665555555566667777776543 21 1122333444445778888888888877653 56677777776
Q ss_pred HHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCC------CCcccHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 046631 149 LNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRR------RNVVAWNTIVSWYVKTERYVEAVRQFRMMLRM 220 (813)
Q Consensus 149 i~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 220 (813)
...+... .|+.+..++.|+.... .....|...|.--..++++.....++++.++.
T Consensus 120 ~~f~~n~-----------------~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 120 LAFLKNN-----------------NGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhcc-----------------CCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 6655433 2777778888877653 24456888888888888999999999988773
No 281
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.10 E-value=16 Score=37.58 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=39.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC----C-ChhhHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGD----R-DQATWNAMIAGYTQ---NGLLEEAFVAFRQMLEHNVTPNVVTIASVLPA 522 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 522 (813)
++-.|-...+++..+++++.+.... + ....-....-++-+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3444666666777777777665321 0 11111223344455 67777777777775555455666666555443
No 282
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.67 E-value=3.8 Score=34.52 Aligned_cols=29 Identities=17% Similarity=-0.002 Sum_probs=13.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.|.-++.+.++++++..+.+.+++.+|++
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 33444444444444444444444444444
No 283
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.55 E-value=4.8 Score=34.71 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=49.7
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHH
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRL 695 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 695 (813)
...++.+++..+++.|. -+.|+ ...-..-+..+...|+|++|..+++++...+.....-..|+..|..
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34788999999998887 66886 5555666777889999999999999997776443133444444443
No 284
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.46 E-value=1.4 Score=42.98 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=61.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 046631 447 MESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLE-----HNVTPNVVTIASVL 520 (813)
Q Consensus 447 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~t~~~ll 520 (813)
+...++..+..+|+.+.+...++++...+| +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 345688889999999999999999887777 888999999999999999999999998876 46777666544443
Q ss_pred H
Q 046631 521 P 521 (813)
Q Consensus 521 ~ 521 (813)
.
T Consensus 235 ~ 235 (280)
T COG3629 235 E 235 (280)
T ss_pred H
Confidence 3
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.40 E-value=0.38 Score=30.11 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 722 HVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 722 ~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
+..|+++|.+.|+|++|++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678888999999999999888854
No 286
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.35 E-value=0.3 Score=29.99 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 714 (813)
+|..+...+...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 566666777777777777777777777666
No 287
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.30 E-value=17 Score=36.26 Aligned_cols=20 Identities=5% Similarity=-0.089 Sum_probs=13.3
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 046631 587 LGYGQHGMSERALSLFRSMK 606 (813)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~m~ 606 (813)
..+.+.++++.|.+.|+-..
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34456678888888777543
No 288
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.04 E-value=30 Score=38.61 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIPEKN 578 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~ 578 (813)
...|+..|...+++..|..++-...+++
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhccChH
Confidence 3448888899999999998888877654
No 289
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.57 E-value=61 Score=41.42 Aligned_cols=148 Identities=11% Similarity=0.063 Sum_probs=77.3
Q ss_pred HHHHHHHCCCcHHHHHHHHHH----HHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHh
Q 046631 382 MISAFVQNGLDDEGLMLVYEM----QKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAK 457 (813)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m----~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (813)
+..+-.+++.+..|+..++.- .+. .....-|-.+...|...+++|...-+....... ..+ ..-+-....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~----~sl-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD----PSL-YQQILEHEA 1461 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC----ccH-HHHHHHHHh
Confidence 334445566666666666662 211 111222333344666667766665555431110 011 223445566
Q ss_pred cCCHHHHHHHHhhcCCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhccCCChHHHHHH
Q 046631 458 SGLIKTARQIFEKNDSGDRD-QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIA-SVLPACNPMGNIELGKQL 535 (813)
Q Consensus 458 ~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~~~~~~a~~~ 535 (813)
.|++..|...|+.+.+.+|+ ...++-++......|.++.++...+-.... ..+....++ .=+.+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 78888888888888777665 567777777666777776666644443332 122222222 222333555666655555
Q ss_pred HH
Q 046631 536 HG 537 (813)
Q Consensus 536 ~~ 537 (813)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 44
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.44 E-value=12 Score=34.06 Aligned_cols=92 Identities=11% Similarity=-0.063 Sum_probs=68.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHhCcCCChH----HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 046631 655 CVADMLGRVGKVVEAYEFVKELGEEGNVL----EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA 730 (813)
Q Consensus 655 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 730 (813)
.+...+..+|++++|+.-++.....+... .+--.|.......|.+++|...++...+-.-. +....+-|+++.
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~---~~~~elrGDill 170 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA---AIVAELRGDILL 170 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH---HHHHHHhhhHHH
Confidence 44566789999999999998765444222 12345667778889999999988765433222 455678899999
Q ss_pred hcCCcHHHHHHHHHHHHCC
Q 046631 731 EEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 731 ~~g~~~~A~~~~~~m~~~~ 749 (813)
..|+.++|+.-|++..+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 9999999999999999764
No 291
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.09 E-value=17 Score=34.30 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC----ChhHHHHHH
Q 046631 582 YTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP----STEHYCCVA 657 (813)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~ 657 (813)
|+--...|..+|..+.|-..+++.-+. ...-+.++|++++++....+...- -...+..+.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 344455566666665555555443221 123344455555554433211111 133455566
Q ss_pred HHHhccCCHHHHHHHHHHh-------CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC----CCCCCchhHHHHH
Q 046631 658 DMLGRVGKVVEAYEFVKEL-------GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMD----TRNSMPGYHVLLS 726 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----p~~~~~~~~~~l~ 726 (813)
.+|.+..++++|-..+.+- ..-+.....+-+.+-.+....|+..|+..++...++. |++ ......|.
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed--~r~lenLL 235 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSED--SRSLENLL 235 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHH--HHHHHHHH
Confidence 6777777777776655543 1112222234444455555567888888887765542 333 33333333
Q ss_pred HHHHhcCCcHHHHHHH
Q 046631 727 NIYAEEGNWENVDKVR 742 (813)
Q Consensus 727 ~~~~~~g~~~~A~~~~ 742 (813)
.. ...|+.|++..+.
T Consensus 236 ~a-yd~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TA-YDEGDIEEIKKVL 250 (308)
T ss_pred HH-hccCCHHHHHHHH
Confidence 33 3556666665543
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.98 E-value=12 Score=32.39 Aligned_cols=55 Identities=9% Similarity=-0.038 Sum_probs=29.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCCh
Q 046631 424 LRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQ 478 (813)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 478 (813)
.++.+.+..+++.+.-..+....+...-.-.+...|++++|..+|+++.+..+..
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~ 77 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP 77 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence 3444444444444444444444333334455667777777777777776544443
No 293
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.95 E-value=8.2 Score=38.58 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCH----H
Q 046631 596 ERALSLFRSMKGCGIEPDAI--TFVAVLSACSYAGL--VDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKV----V 667 (813)
Q Consensus 596 ~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~ 667 (813)
+.+..+|+.+.+.|+..+.. ....++..+..... +.++.++++.+.+. |+++...+|..++-+-.-.+.. +
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLall~~~~~~~~~ 238 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLALLEDPEEKIVE 238 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHHhcCCchHHHHH
Confidence 56777888888878766544 33334433322222 45788888888888 9988877787776555433333 3
Q ss_pred HHHHHHHHhCcCC
Q 046631 668 EAYEFVKELGEEG 680 (813)
Q Consensus 668 ~A~~~~~~~~~~~ 680 (813)
+-.++.+.+..++
T Consensus 239 ~i~ev~~~L~~~k 251 (297)
T PF13170_consen 239 EIKEVIDELKEQK 251 (297)
T ss_pred HHHHHHHHHhhCc
Confidence 3334444444333
No 294
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.75 E-value=3.2 Score=38.01 Aligned_cols=126 Identities=15% Similarity=0.107 Sum_probs=81.0
Q ss_pred hCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCCh
Q 046631 607 GCGIEPDAITFVAVLS--ACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNV 682 (813)
Q Consensus 607 ~~g~~p~~~~~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 682 (813)
..++.++...-...=+ -|-..|.++-|.--|.+.. .+.|+ +.+||-|+--+...|+++.|.+.|+.. +.+|..
T Consensus 56 ~~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y 132 (297)
T COG4785 56 SRALTDEERAQLLFERGVLYDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 132 (297)
T ss_pred hccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc
Confidence 3455565543322222 3556677777777676665 67887 888888888888999999999999886 444433
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCc--HHHHH
Q 046631 683 LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNW--ENVDK 740 (813)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~--~~A~~ 740 (813)
-.+...-+-++.--|+++.|.+-+.+..+.+|++ | +..| |+|....+. .+|..
T Consensus 133 ~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D--P--fR~L-WLYl~E~k~dP~~A~t 187 (297)
T COG4785 133 NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND--P--FRSL-WLYLNEQKLDPKQAKT 187 (297)
T ss_pred hHHHhccceeeeecCchHhhHHHHHHHHhcCCCC--h--HHHH-HHHHHHhhCCHHHHHH
Confidence 3233333334444688899998888888888887 4 2333 555544443 34444
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.71 E-value=3 Score=40.54 Aligned_cols=97 Identities=15% Similarity=0.136 Sum_probs=72.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-C--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 046631 543 LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE-K--------NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD 613 (813)
Q Consensus 543 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 613 (813)
|......+...++..-....+++++...+-++.. | ...+|-.+ +..-+.++++-++..=+.-|+.||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccc
Confidence 4455555566666666667788888888777662 2 22333332 233467899999999999999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046631 614 AITFVAVLSACSYAGLVDEGLQIFDLMQQE 643 (813)
Q Consensus 614 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 643 (813)
..+++.+++.+.+.+++.+|.++...|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999999888777654
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.66 E-value=0.45 Score=29.80 Aligned_cols=26 Identities=23% Similarity=0.102 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
|..|...|.+.|++++|+.++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666677777777777766443
No 297
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.60 E-value=1.2 Score=43.50 Aligned_cols=94 Identities=11% Similarity=0.041 Sum_probs=65.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCChHHHHHHHHHHHHHhC
Q 046631 620 VLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 620 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 697 (813)
-..-|.++|.+++|+..|.... .+.| ++..+..-..+|.+..++..|+.=.+... .+......|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3456778888888888887766 4567 67777777888888888877765544432 11112225555555656667
Q ss_pred CHHHHHHHHHHHhcCCCCC
Q 046631 698 HSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~~ 716 (813)
+.++|.+-++.+++++|.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 8888888888888888885
No 298
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.23 E-value=7 Score=35.44 Aligned_cols=25 Identities=28% Similarity=0.125 Sum_probs=14.4
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 692 SCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 692 ~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
+|-+...++.|+.-|+++++++|..
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcch
Confidence 4444455566666666666666654
No 299
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.20 E-value=25 Score=35.01 Aligned_cols=19 Identities=11% Similarity=-0.046 Sum_probs=12.8
Q ss_pred HHCCCcHHHHHHHHHHHHC
Q 046631 387 VQNGLDDEGLMLVYEMQKQ 405 (813)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~ 405 (813)
.+.|+.+.|..++.+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 4567777777777776553
No 300
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.16 E-value=27 Score=36.20 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=56.6
Q ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC--CchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 679 EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS--MPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 679 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.......|..+...++++|.++.|...+.++...++... .+......+.++...|+..+|...++...+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455899999999999999999999999988663321 2566666788999999999999999888873
No 301
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.06 E-value=2.9 Score=40.80 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 046631 550 VGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKG-----CGIEPDAITFVAVL 621 (813)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll 621 (813)
++..++..+..+|+.+.+.+.++++.. -|...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 567778888888888888888887763 2677888888888888888888888887765 46667666555444
Q ss_pred HH
Q 046631 622 SA 623 (813)
Q Consensus 622 ~a 623 (813)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
No 302
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.04 E-value=7.8 Score=34.60 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=55.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccC--CHHHHHHHHHHh
Q 046631 599 LSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVG--KVVEAYEFVKEL 676 (813)
Q Consensus 599 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~ 676 (813)
+++++.+.+.|+.|+...+..+++.+.+.|.+....+++. +++-+|.....+.+-.+.... -..-|.++++++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 5556666667777777777777777777777655554442 255555444443333332221 133444555554
Q ss_pred CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 046631 677 GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKL 709 (813)
Q Consensus 677 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 709 (813)
.. .+..++..+...|++-+|.++.++.
T Consensus 89 ~~------~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 89 GT------AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hh------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 32 3344455566667777777766654
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.02 E-value=0.64 Score=28.42 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 720 GYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
..+..++.+|...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999988643
No 304
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.93 E-value=19 Score=34.35 Aligned_cols=204 Identities=13% Similarity=0.132 Sum_probs=120.2
Q ss_pred CCCCchhHHHHHHHHH-HhcCCHHHHHHHHhhCCC--C-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CC-
Q 046631 543 LLDQNVFVGTSLIDMY-SKSGVINYAANVFAKIPE--K-----NSVTYTTMILGYGQHGMSERALSLFRSMKGC---GI- 610 (813)
Q Consensus 543 ~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~- 610 (813)
+-+||+..-|..-..- .+..++++|+.-|++..+ + .-.+...+|..+.+.+++++-++.|++|..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3455555444322111 233467777777776652 1 2345566788888888888888888877541 11
Q ss_pred -CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC----CCCChhHHHHHHHHHhccCCHHHHHHHHHHhC-----cCC
Q 046631 611 -EPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK----IQPSTEHYCCVADMLGRVGKVVEAYEFVKELG-----EEG 680 (813)
Q Consensus 611 -~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~ 680 (813)
.-+..+.+.+++-.+...+.+--..+++.-.+... -..-..+-.-|+..|...|.+.+-.++++++. +++
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 12334566666655555555444444433322211 11124455678889999998888888888762 111
Q ss_pred --------ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH----HHHHHhcCCcHHHHH-HHHHHH
Q 046631 681 --------NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL----SNIYAEEGNWENVDK-VRKEMR 746 (813)
Q Consensus 681 --------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l----~~~~~~~g~~~~A~~-~~~~m~ 746 (813)
....+|..=+..|..+.+...-..++++++.+..--.+|...-.+ +.++.+.|+|++|.. +|+..+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 123366666788888888888888999988765433113332222 334668899998876 444443
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.89 E-value=5.5 Score=35.20 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=71.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChh-HH--HHHHHHHhccCC
Q 046631 590 GQHGMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTE-HY--CCVADMLGRVGK 665 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~--~~l~~~~~~~g~ 665 (813)
.+.+..++|+.-|.++.+.|...-++ ............|+...|...|+++-.. .-.|-+. -. ..-..++...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 45566777777777777766443332 1122223345677777777777777655 2223211 11 122344567777
Q ss_pred HHHHHHHHHHhCcCCChH--HHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 666 VVEAYEFVKELGEEGNVL--EIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 666 ~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
+++....++-+...++.. ..-.+|.-+-.+.|++..|...|..+.+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777777777764444332 2456677777777888888887777765
No 306
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.77 E-value=0.074 Score=46.90 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=54.9
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCCCc
Q 046631 112 SVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNV 191 (813)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 191 (813)
.++..+.+.+.......+++.+...+...+....+.++..|++. +..+...+.++....
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~------------------~~~~~l~~~L~~~~~--- 70 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKY------------------DPYEKLLEFLKTSNN--- 70 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCT------------------TTCCHHHHTTTSSSS---
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhc------------------CCchHHHHHcccccc---
Confidence 35667777777888888888888776666778888888888887 666666666663332
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHH
Q 046631 192 VAWNTIVSWYVKTERYVEAVRQFRMM 217 (813)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~l~~~m 217 (813)
.-...++..+-+.|.+++|.-++.++
T Consensus 71 yd~~~~~~~c~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 71 YDLDKALRLCEKHGLYEEAVYLYSKL 96 (143)
T ss_dssp S-CTHHHHHHHTTTSHHHHHHHHHCC
T ss_pred cCHHHHHHHHHhcchHHHHHHHHHHc
Confidence 23344555556666666666655543
No 307
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.70 E-value=0.61 Score=28.73 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHhccCCHHHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAY 670 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~ 670 (813)
..+|..++.+|...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 555555555555555555543
No 308
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.68 E-value=36 Score=35.30 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=25.8
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHh-ccCCHHHHHHHHHHh
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVADMLG-RVGKVVEAYEFVKEL 676 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 676 (813)
.+.+.|-+..|.++.+-+. .+.|+ +.....+|+.|+ ++++++--+++.+..
T Consensus 112 ~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 4455566666666555554 33442 333444445443 555555555555543
No 309
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.63 E-value=1.3 Score=27.12 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666777777777666665
No 310
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.04 E-value=22 Score=31.82 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=55.9
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHH
Q 046631 576 EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCC 655 (813)
Q Consensus 576 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 655 (813)
.++...+..++..+.+.|++.. +.+++..++-+|.......+-... +....+.++--.|.++.+ ..+..
T Consensus 26 ~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~-----~~~~~ 94 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG-----TAYEE 94 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh-----hhHHH
Confidence 4667788888888888887544 445555666677665554443322 233444444444544311 13566
Q ss_pred HHHHHhccCCHHHHHHHHHHh
Q 046631 656 VADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~ 676 (813)
+++.+...|++-+|.++.++.
T Consensus 95 iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHc
Confidence 777888888888888888775
No 311
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.02 E-value=1 Score=27.21 Aligned_cols=28 Identities=14% Similarity=0.030 Sum_probs=13.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
.++.++.+.|+.++|...++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3344444444555555555544444443
No 312
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.99 E-value=27 Score=32.80 Aligned_cols=97 Identities=10% Similarity=-0.015 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHhC-----cCCChH-H-HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCch---
Q 046631 652 HYCCVADMLGRV-GKVVEAYEFVKELG-----EEGNVL-E-IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPG--- 720 (813)
Q Consensus 652 ~~~~l~~~~~~~-g~~~~A~~~~~~~~-----~~~~~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--- 720 (813)
.+..+.+.|... .++++|+..++... ++.... . .+-.....-...+++.+|+.+|+++.....+++...
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 344566666554 66777777776651 111111 0 122222233445778889999988876555441111
Q ss_pred -hHHH-HHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 721 -YHVL-LSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 721 -~~~~-l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
-|.+ -+-++...++.-.+...+++-.+.
T Consensus 195 KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 195 KDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 1222 222333335555666666666654
No 313
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.47 E-value=3.6 Score=28.45 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcC
Q 046631 721 YHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRNAG 796 (813)
Q Consensus 721 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 796 (813)
++..++-.+.+.|++++|.+..+.+.+. +|.+.+.......+.+++.+.|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccC
Confidence 3556777899999999999999999943 5666666555555556666654
No 314
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.41 E-value=11 Score=40.36 Aligned_cols=150 Identities=21% Similarity=0.161 Sum_probs=96.5
Q ss_pred hcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 046631 560 KSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDL 639 (813)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 639 (813)
-.|+++.|-.++..+.+ ...+.++.-+.++|..++|+++ .+|..-... ...+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFe---lal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRFE---LALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhhh---hhhhcCcHHHHHHHHHh
Confidence 45677777776666553 2334555666677777777653 333332222 22467888888887654
Q ss_pred HHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCc
Q 046631 640 MQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMP 719 (813)
Q Consensus 640 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 719 (813)
.. +..-|..|+++....|++..|.+-+.+.. -|..|+-.+...|+.+.-..+...+-+.+..+ .
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--~ 726 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR-------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--L 726 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc-------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc--h
Confidence 42 45668889999999999999998888764 34555666666777776556666555555554 2
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 720 GYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
.+ .+|...|++++..+++.+-
T Consensus 727 AF-----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 AF-----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HH-----HHHHHcCCHHHHHHHHHhc
Confidence 22 3677788888888877543
No 315
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.31 E-value=54 Score=37.05 Aligned_cols=45 Identities=16% Similarity=0.039 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhccc
Q 046631 297 WNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQL 343 (813)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 343 (813)
--.+|-.+.+.|++++|.++. ...+ .........|...+..+...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~-~~~~-~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVA-NENR-NQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHH-HHTG-GGS-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHH-HHhh-hhhcchhHHHHHHHHHHHhC
Confidence 335666777888888888776 3333 33555566677777777654
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.25 E-value=4.9 Score=39.51 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=62.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc
Q 046631 586 ILGYGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRV 663 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 663 (813)
.+-|.++|.+++|+..|...+. +.| +.+++..-..||.+...+..|..-....+.- .-. +..|..-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---d~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---DKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---hHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999887 677 8899999999999999998887766655522 111 33344444444444
Q ss_pred CCHHHHHHHHHHh-CcCCCh
Q 046631 664 GKVVEAYEFVKEL-GEEGNV 682 (813)
Q Consensus 664 g~~~~A~~~~~~~-~~~~~~ 682 (813)
|+..+|.+=++.. ..+|+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hhHHHHHHhHHHHHhhCccc
Confidence 5555555544443 344543
No 317
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.14 E-value=9.3 Score=34.89 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI--TFVAVLSACSYAGLVDEGLQIFDLMQ 641 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~ 641 (813)
.+..+..-|.+.|+.+.|++.|.++.+....+... .+..+++.+...+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34445555555566666666666655544333332 34455555555666666555555544
No 318
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.00 E-value=1.1 Score=25.56 Aligned_cols=24 Identities=8% Similarity=0.256 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHH
Q 046631 720 GYHVLLSNIYAEEGNWENVDKVRK 743 (813)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~ 743 (813)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677888888888888888765
No 319
>PRK09687 putative lyase; Provisional
Probab=85.54 E-value=41 Score=33.48 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=11.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCC
Q 046631 689 LLGSCRLHGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 689 l~~~~~~~g~~~~a~~~~~~~~~~~p 714 (813)
.+.++...|+. +|...+.++.+.+|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 33444444442 34555555554444
No 320
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.28 E-value=15 Score=28.93 Aligned_cols=77 Identities=17% Similarity=0.097 Sum_probs=48.0
Q ss_pred HHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcH-HHHHHHHHHH
Q 046631 670 YEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWE-NVDKVRKEMR 746 (813)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~m~ 746 (813)
..+-..+..+|+..+....+...+...|+++.|.+.+-.++..++.......-..|..++...|.-+ -+.++.++|.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3344445566766667778888888888888888888888887766544566666667777666643 4445555543
No 321
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.20 E-value=54 Score=36.53 Aligned_cols=149 Identities=16% Similarity=0.136 Sum_probs=80.2
Q ss_pred hcCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 046631 591 QHGMSERALSLFRSMKG-------CGIEPDAITFVAVLSACSYAG-----LVDEGLQIFDLMQQEYKIQPSTEHYCCVAD 658 (813)
Q Consensus 591 ~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 658 (813)
...+.+.|+.+|+.+.+ .| .......+..+|.+.. +.+.|..++....+. | .|+...+ ++.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~--lg~ 333 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYL--LGV 333 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHH--HHH
Confidence 34555666666666554 44 2223444445554432 556677777666543 2 2333333 333
Q ss_pred HHhcc---CCHHHHHHHHHHhCcCCChHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh
Q 046631 659 MLGRV---GKVVEAYEFVKELGEEGNVLEIWGSLLGSCRL----HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE 731 (813)
Q Consensus 659 ~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 731 (813)
++... .+...|.++|......+... +...+..++.. ..+.+.|..+++++.+.++ +.+...++..+.-
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~----~~A~~~~~~~~~~ 408 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLELAFAYYKKAAEKGN----PSAAYLLGAFYEY 408 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC----hhhHHHHHHHHHH
Confidence 33322 35677888888777667665 33333333322 2366778888888877772 2333333333322
Q ss_pred c-CCcHHHHHHHHHHHHCCCc
Q 046631 732 E-GNWENVDKVRKEMRERGLR 751 (813)
Q Consensus 732 ~-g~~~~A~~~~~~m~~~~~~ 751 (813)
. ++++.+.-.+..+.+.|..
T Consensus 409 g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 409 GVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred ccccccHHHHHHHHHHHhhhh
Confidence 2 7777777777777666643
No 322
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.78 E-value=0.53 Score=46.18 Aligned_cols=92 Identities=10% Similarity=-0.006 Sum_probs=62.0
Q ss_pred ccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHH
Q 046631 662 RVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDK 740 (813)
Q Consensus 662 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 740 (813)
..|.+++|++.+... +..|....++..-..++.+.++...|++-+..+++++|+. ..-|-.-+.+....|+|++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds--a~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS--AKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc--ccccchhhHHHHHhhchHHHHH
Confidence 455566676666654 4444544455555666667777777777777777777776 6667777777777788888888
Q ss_pred HHHHHHHCCCccCCc
Q 046631 741 VRKEMRERGLRKEVG 755 (813)
Q Consensus 741 ~~~~m~~~~~~~~~~ 755 (813)
.+....+.+.....+
T Consensus 204 dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 204 DLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHhccccHHHH
Confidence 777777776654443
No 323
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.62 E-value=12 Score=33.56 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCc
Q 046631 699 SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLR 751 (813)
Q Consensus 699 ~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 751 (813)
+++|...|+++.+.+|.+ ..+...| .+. .+|-++..++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~n--e~Y~ksL-e~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN--ELYRKSL-EMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHH-HHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCc--HHHHHHH-HHH------HhhHHHHHHHHHHHhh
Confidence 577888899999999998 5554444 222 3677788887766544
No 324
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.62 E-value=3.1 Score=28.78 Aligned_cols=37 Identities=22% Similarity=0.068 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHH
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHV 723 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~ 723 (813)
....+.-++.+.|+++.|.+..+.+++.+|++ ..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N--~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDN--RQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS---HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc--HHHHH
Confidence 34567778899999999999999999999998 55433
No 325
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.53 E-value=25 Score=33.19 Aligned_cols=94 Identities=13% Similarity=-0.059 Sum_probs=65.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh---------CcCCChHH----------HHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKEL---------GEEGNVLE----------IWGSLLGSCRLHGHSELAEVVAKKLLEMD 713 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 713 (813)
...-++-+.+.|++.+|..-|.++ +++|..+. .+-..-.++...|++-++++-...++...
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 334455566777777776655542 45554431 22233345556788999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 714 TRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 714 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
|.+ ..+|.--+.+.+..=+.++|..-+.+..+.
T Consensus 261 ~~n--vKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 261 PGN--VKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred Cch--HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 999 888888888877777777888888888743
No 326
>PRK10941 hypothetical protein; Provisional
Probab=84.33 E-value=8.4 Score=37.78 Aligned_cols=62 Identities=19% Similarity=0.070 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..+.|-.++.+.++++.|..+.+.++.+.|++ +.-..--|-+|.+.|.+..|..-++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d--p~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPED--PYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 56777888899999999999999999999998 766667888999999999999988888754
No 327
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.15 E-value=81 Score=35.75 Aligned_cols=461 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHH-HhCCCCCCcHHHHHHHHHHHH-hcCChHHHHHHHhhcCCCC---------cchHHHHHHHHHhCCCc
Q 046631 242 YKSADVVYGLLV-KLGSEYVNDLFVASSAIFMYA-ELGCFDFARKIFDNCLERN---------TEVWNTMIGGYVQNNHP 310 (813)
Q Consensus 242 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~---------~~~~~~li~~~~~~g~~ 310 (813)
+..|.+.++.+. +..+....+..++-.+...|. ...+++.|+..+++..... -..-..++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Q ss_pred hHHHHHHHHHHHhCCC---CCChhhHHHH-HHHhcccCcchHHHHHHHHHHH--hcccchhhhhccCCCCCcchHHHHHH
Q 046631 311 VEAIELFVQVLELDEI---VFDDVTFLSA-LSAVSQLQELDLGQQLHAYIIK--NFVALPVIVLNAVIERDVVSWNTMIS 384 (813)
Q Consensus 311 ~~A~~~~~~~m~~~g~---~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~li~ 384 (813)
. |...+++......- .+-...|..+ +..+...++...|.+.++.+.. ....+ +.+.++-.++.
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d----------~~~~v~~~l~~ 185 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD----------PAVFVLASLSE 185 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC----------HHHHHHHHHHH
Q ss_pred HH--HHCCCcHHHHHHHHHHHHCCCCC---------CHhHHHHHHHHHh--cCCChHHHHHHHHHHHHhCCCCcchHHHH
Q 046631 385 AF--VQNGLDDEGLMLVYEMQKQGFMI---------DSVTVTALLSAAS--NLRNQDVGKQTHAYLLRHGIHFEGMESYL 451 (813)
Q Consensus 385 ~~--~~~g~~~~A~~~~~~m~~~g~~p---------d~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 451 (813)
+. .+.+..+++++.++++......+ -..+|..++..++ ..|+++.+...+..+.+ .
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~-----------~ 254 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ-----------F 254 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------H
Q ss_pred HHHHHhcC---------------------CHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCCh---------HHHHHHH
Q 046631 452 IDMYAKSG---------------------LIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLL---------EEAFVAF 501 (813)
Q Consensus 452 ~~~~~~~g---------------------~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---------~~A~~~~ 501 (813)
++...+.. .-.. .-+|.-++ ..+....--++.+.....+. ++|++..
T Consensus 255 ~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~-~~~f~wl~--~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i 331 (608)
T PF10345_consen 255 LDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGT-PLVFSWLP--KEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQI 331 (608)
T ss_pred HHHhhcCccCCCcCCCeeEEeecccccccCCCc-eeEEeecC--HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHH
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----C
Q 046631 502 RQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP-----E 576 (813)
Q Consensus 502 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~ 576 (813)
++....+-.....+...+..-......+..-..++.-+.. +-.|++..|...++.+. .
T Consensus 332 ~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~-----------------~~~~~~~~a~~~l~~~~~~~~~~ 394 (608)
T PF10345_consen 332 EKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCN-----------------FIRGDWSKATQELEFMRQLCQRS 394 (608)
T ss_pred HHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHH-----------------HHCcCHHHHHHHHHHHHHHHhcC
Q ss_pred CC-------HhHHHHHHHHHHhcCChHHHHHHHH--------HHHhCCCCCCHHHHHH--HHHHHhccCcHHH----HHH
Q 046631 577 KN-------SVTYTTMILGYGQHGMSERALSLFR--------SMKGCGIEPDAITFVA--VLSACSYAGLVDE----GLQ 635 (813)
Q Consensus 577 ~~-------~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~--ll~a~~~~g~~~~----a~~ 635 (813)
++ ...+....-.+...|+.+.|...|. .....+...+...+.. ++-.+...+.-.. ..+
T Consensus 395 ~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~ 474 (608)
T PF10345_consen 395 PSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNE 474 (608)
T ss_pred ccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHH
Q ss_pred HHHHHHHhcCCCCC---hhHHHHHHHHH---------hccCCHHHHHHHH-HHhCcCCChHHHHHHHHHHHHHhCCHHHH
Q 046631 636 IFDLMQQEYKIQPS---TEHYCCVADML---------GRVGKVVEAYEFV-KELGEEGNVLEIWGSLLGSCRLHGHSELA 702 (813)
Q Consensus 636 ~~~~~~~~~~~~p~---~~~~~~l~~~~---------~~~g~~~~A~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 702 (813)
+++.+.....-.|+ ...+..++.++ .....+.++++.. +.....--..-+.+.+..-+. .|+..+.
T Consensus 475 l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~ 553 (608)
T PF10345_consen 475 LLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQ 553 (608)
T ss_pred HHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHH
Q ss_pred HHHHHHHhcCCCCC-------CCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 703 EVVAKKLLEMDTRN-------SMPGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 703 ~~~~~~~~~~~p~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
......+..+-... +....-.++.+.|...|+.++|.....+.
T Consensus 554 ~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 554 AKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
No 328
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.72 E-value=85 Score=35.63 Aligned_cols=67 Identities=12% Similarity=-0.013 Sum_probs=41.4
Q ss_pred CChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCCh
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDY 242 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 242 (813)
+++....+.+..- ..+...-.....+....|+.++|....+.+-..|. .....+..+++.+.+.|.+
T Consensus 113 ~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 113 EDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred cCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCC
Confidence 7777777733232 23444445566677778888888877777765552 3445566666666655543
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.69 E-value=2.4 Score=25.82 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 720 GYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46788999999999999999999998753
No 330
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=82.94 E-value=55 Score=32.86 Aligned_cols=131 Identities=12% Similarity=0.116 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc--CCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhh
Q 046631 393 DEGLMLVYEMQKQGFMIDSVTVTALLSAASN--LRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEK 470 (813)
Q Consensus 393 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 470 (813)
++.+.+++.|.+.|++-+..+|.+....... ..+++ .....|..+|+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~------------------------------~~~~ra~~iy~~ 128 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYD------------------------------EIIQRAKEIYKE 128 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHH------------------------------HHHHHHHHHHHH
Confidence 4566788888999988888777653322221 11111 113345555555
Q ss_pred cCCCCC-----ChhhHHHHHHHHHhCCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhccCCC--hHHHHHHHH
Q 046631 471 NDSGDR-----DQATWNAMIAGYTQNGL----LEEAFVAFRQMLEHNVTPNVV--TIASVLPACNPMGN--IELGKQLHG 537 (813)
Q Consensus 471 ~~~~~~-----~~~~~~~li~~~~~~~~----~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~ 537 (813)
|.+..| +-.++..|+.. ..++ .+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+..+++
T Consensus 129 mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~ 206 (297)
T PF13170_consen 129 MKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYN 206 (297)
T ss_pred HHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 554443 33344444333 2222 245667777777777665433 33444444333322 346777888
Q ss_pred HHHHcCCCCchhHHHHHH
Q 046631 538 FSIRYLLDQNVFVGTSLI 555 (813)
Q Consensus 538 ~~~~~~~~~~~~~~~~li 555 (813)
.+.+.|+++....|..+.
T Consensus 207 ~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 207 ALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHcCCccccccccHHH
Confidence 888888887776665543
No 331
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.88 E-value=34 Score=30.49 Aligned_cols=125 Identities=10% Similarity=0.097 Sum_probs=83.9
Q ss_pred HHhcCCHHHHHHHHhhCCCCCHhHHHHHH-----HHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHH--HHhccCc
Q 046631 558 YSKSGVINYAANVFAKIPEKNSVTYTTMI-----LGYGQHGMSERALSLFRSMKGCGIEPDAI-TFVAVLS--ACSYAGL 629 (813)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~--a~~~~g~ 629 (813)
+.+.+..++|+.-|..+.+.+.-.|-.|. ....+.|+...|+..|++.-.....|-.. -..-|=. .+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45678889999999988876655555543 44667889999999999988754444433 1222222 3457888
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChH
Q 046631 630 VDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVL 683 (813)
Q Consensus 630 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 683 (813)
+++.....+-+... +-.-....-..|+-+-.+.|++.+|.++|..+......+
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 88887776665432 211124555677788889999999999999886544333
No 332
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.82 E-value=3 Score=24.38 Aligned_cols=31 Identities=23% Similarity=0.087 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+|..+...+...|+++.|...++++++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666667777777777776666554
No 333
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.60 E-value=10 Score=35.76 Aligned_cols=64 Identities=13% Similarity=0.043 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhCCH-------HHHHHHHHHHhcCCCCCC----CchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 685 IWGSLLGSCRLHGHS-------ELAEVVAKKLLEMDTRNS----MPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~-------~~a~~~~~~~~~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
++--+.|.|+..|+. ..|...|+++++.+..+. ......++|.++.+.|+.++|.+.+.++...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 667778888888874 345566666665543311 1356778999999999999999999999854
No 334
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.31 E-value=73 Score=33.84 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=58.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
|....-+++..+..+-++.-+..+..+|..-| -+...|..++..|... ..+.-..+|+.+.+..+. |+..-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 55566677777777777777777777777743 4556666777777666 445556666666665543 3334444555
Q ss_pred HHHhcCCHHHHHHHHhhC
Q 046631 557 MYSKSGVINYAANVFAKI 574 (813)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~ 574 (813)
.|-+ ++...+...|.++
T Consensus 141 ~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHH-hchhhHHHHHHHH
Confidence 5544 6666666666554
No 335
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=82.25 E-value=3.7 Score=36.68 Aligned_cols=46 Identities=13% Similarity=0.037 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC----cHHHHHHHHHHH
Q 046631 699 SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN----WENVDKVRKEMR 746 (813)
Q Consensus 699 ~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m~ 746 (813)
+++|+.-+++++.++|+. ..++..+|++|...+. ..+|.++|++..
T Consensus 51 iedAisK~eeAL~I~P~~--hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNK--HDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 456677778888899988 7888888888876543 334444444443
No 336
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.13 E-value=3.8 Score=38.24 Aligned_cols=87 Identities=14% Similarity=0.032 Sum_probs=58.3
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCCHHHHHHH-HHHhCcCCChHHHHHHHHHHHHHhCCHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPST-EHYCCVADMLGRVGKVVEAYEF-VKELGEEGNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 700 (813)
-|.....++.|+..+.+.+ -+.|+. .-|..=+.++.+..+|+.+..= .+.+...|+..-....+..+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3455566777877766666 567875 4455666677777788777654 3334566666656666777777777788
Q ss_pred HHHHHHHHHhcC
Q 046631 701 LAEVVAKKLLEM 712 (813)
Q Consensus 701 ~a~~~~~~~~~~ 712 (813)
+|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 888888887543
No 337
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.89 E-value=10 Score=34.56 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=50.5
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHhhCCCChhHHHHHHHHHHHh
Q 046631 192 VAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTI--SFVNVFPALSSLGDYKSADVVYGLLVKL 255 (813)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 255 (813)
..+..+..-|++.|+.++|++.|.++++....|... .+..+|+.+...+++..+.....++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 367788899999999999999999998876555443 6677788888888888888777766554
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.23 E-value=1.9 Score=25.92 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 721 YHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 721 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.+..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999864
No 339
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=81.20 E-value=1.5 Score=36.66 Aligned_cols=22 Identities=59% Similarity=1.165 Sum_probs=18.7
Q ss_pred ceeEEEECCEEEEEecCCCCCCChHH
Q 046631 755 GCSWIDVGGYVNRFASKDQEHPQSHK 780 (813)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (813)
||||+++ +.|.+||.+||+...
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~ 23 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSEL 23 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHH
Confidence 6889877 899999999999733
No 340
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.94 E-value=99 Score=34.49 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhCC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-CCChHHHHHHHHHHHHcC
Q 046631 480 TWNAMIAGYTQNG-----LLEEAFVAFRQMLEHNVTPNVVTIASVLPACNP-MGNIELGKQLHGFSIRYL 543 (813)
Q Consensus 480 ~~~~li~~~~~~~-----~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~ 543 (813)
....+...|.+.. +.+.|+.+|.+....| .|+...+...+.-... ..+...|.+++....+.|
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 3444444444432 4555677776666655 3444333222222222 234455555655555555
No 341
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.71 E-value=2.7 Score=27.04 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 720 GYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888999999999999999988875
No 342
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=79.22 E-value=1.1e+02 Score=34.11 Aligned_cols=181 Identities=17% Similarity=0.226 Sum_probs=106.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHhccCCChHHHHHHHHHHHHc--CCCCc
Q 046631 480 TWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVV----------TIASVLPACNPMGNIELGKQLHGFSIRY--LLDQN 547 (813)
Q Consensus 480 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~ 547 (813)
+...++-.|....+++..+++.+.+... ||.. .|...++--.+.|+-++|....-.+.+. .+.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 4455666777777788888887777652 3322 2333333344567777777766655554 34454
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHH
Q 046631 548 VFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAIT---FVAVLSAC 624 (813)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~a~ 624 (813)
+||-+|++ |+.|- +-+.|...+..+.|.+.|++.-+ +.|...+ +..|+.+
T Consensus 280 ---------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a- 332 (1226)
T KOG4279|consen 280 ---------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA- 332 (1226)
T ss_pred ---------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH-
Confidence 35666653 22221 11233444556778888888877 6777654 3344433
Q ss_pred hccCc-HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHH
Q 046631 625 SYAGL-VDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAE 703 (813)
Q Consensus 625 ~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 703 (813)
.|. ++...+ +... | ..|...+++.|.++.-.++++-. ..+.+-.-.+|+.+|.
T Consensus 333 --aG~~Fens~E----lq~I-g--------mkLn~LlgrKG~leklq~YWdV~-----------~y~~asVLAnd~~kai 386 (1226)
T KOG4279|consen 333 --AGEHFENSLE----LQQI-G--------MKLNSLLGRKGALEKLQEYWDVA-----------TYFEASVLANDYQKAI 386 (1226)
T ss_pred --hhhhccchHH----HHHH-H--------HHHHHHhhccchHHHHHHHHhHH-----------HhhhhhhhccCHHHHH
Confidence 332 222221 1111 2 23556778999988887777643 1223334457899999
Q ss_pred HHHHHHhcCCCCC
Q 046631 704 VVAKKLLEMDTRN 716 (813)
Q Consensus 704 ~~~~~~~~~~p~~ 716 (813)
+..+.++++.|..
T Consensus 387 qAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 387 QAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHhccCCce
Confidence 9999999999865
No 343
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.85 E-value=4.8 Score=25.80 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455566666666666666666665543
No 344
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.40 E-value=11 Score=29.96 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHc-CCCCchhHHHHHHH
Q 046631 496 EAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRY-LLDQNVFVGTSLID 556 (813)
Q Consensus 496 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~ 556 (813)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-++.. |-. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 45566677777788999999999999999999999999999888765 322 225665553
No 345
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.34 E-value=30 Score=27.57 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=47.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIA 517 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~ 517 (813)
-+..+...|++++|..+.+... .||...|-+|-.. +.|-.+++..-+.+|...| .|...+|.
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKLC--YPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHccchHHHHHHhcCCCC--CchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 4556778899999999999887 8999999887543 6677777777787887776 55555543
No 346
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.02 E-value=13 Score=29.33 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHc-CCCCchhHHHHHH
Q 046631 495 EEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRY-LLDQNVFVGTSLI 555 (813)
Q Consensus 495 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li 555 (813)
-++.+-++.+....+.|++....+.++||.+.+++..|.++++-++.. |. +...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 355666677777788999999999999999999999999999877743 32 233455444
No 347
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.72 E-value=34 Score=27.42 Aligned_cols=59 Identities=8% Similarity=0.036 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHH
Q 046631 394 EGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLI 452 (813)
Q Consensus 394 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 452 (813)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++.+...--....+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 55566677777789999999999999999999999999999887665433333444443
No 348
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.39 E-value=15 Score=28.92 Aligned_cols=47 Identities=9% Similarity=0.023 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 046631 394 EGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRH 440 (813)
Q Consensus 394 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 440 (813)
++.+-++.+....+.|++....+.++||.+.+++..|.++++.+...
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55666777777788999999999999999999999999999877633
No 349
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.99 E-value=72 Score=30.16 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHhcCCCCC
Q 046631 697 GHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 697 g~~~~a~~~~~~~~~~~p~~ 716 (813)
.|.-.+...+++..+++|.-
T Consensus 209 ~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcc
Confidence 45555666666777777765
No 350
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.96 E-value=25 Score=32.40 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHhccCCHHHHH
Q 046631 596 ERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKI--QPSTEHYCCVADMLGRVGKVVEAY 670 (813)
Q Consensus 596 ~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 670 (813)
+.|.+.|-++...+.--+......|..-| ...+.+++++++.+..+-++- .+|+..+..|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 56666666666665444444444444433 356667777776666554322 345777777777777777777765
No 351
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=74.86 E-value=1.7 Score=38.12 Aligned_cols=53 Identities=13% Similarity=0.045 Sum_probs=29.9
Q ss_pred HHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 046631 520 LPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFA 572 (813)
Q Consensus 520 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 572 (813)
+..+.+.+.......+++.+...+...+....+.++..|++.+..++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44455555555555566666655544556666666666666665555555555
No 352
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.84 E-value=5 Score=22.75 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=10.6
Q ss_pred HHHHHHHhccCCHHHHHHHHH
Q 046631 654 CCVADMLGRVGKVVEAYEFVK 674 (813)
Q Consensus 654 ~~l~~~~~~~g~~~~A~~~~~ 674 (813)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344455555555555555443
No 353
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.48 E-value=17 Score=37.71 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=22.7
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
.+.|+++.+.+.+....+. +.....+..+++....+.|++++|..+-.-|
T Consensus 334 ~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~ 383 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMM 383 (831)
T ss_pred HHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 3445555555544443321 1122344445555555555555555554444
No 354
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=74.27 E-value=76 Score=29.60 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQE 643 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 643 (813)
.||..|..-+...|++++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 36778888888888888888888777654
No 355
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.87 E-value=1.3e+02 Score=35.64 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=73.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCC-CC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHH
Q 046631 617 FVAVLSACSYAGLVDEGLQIFDLMQQEYKIQ-PS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCR 694 (813)
Q Consensus 617 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 694 (813)
|..+++.+...+..+.+.++-..+++..+.. |. ..+++++.+-....|.+-+|...+-+.+......+....|+..+.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 5666677777777777777777766542211 12 556777777778888888888777665443333335666666666
Q ss_pred HhCCHHH------------HHH-HHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHH
Q 046631 695 LHGHSEL------------AEV-VAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKV 741 (813)
Q Consensus 695 ~~g~~~~------------a~~-~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 741 (813)
..|.++. .+. +++..-...|... +.+|.+|-.-+...++|.+|..+
T Consensus 1066 ecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk-~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1066 ECGELEALATFPFIGLEQEVEDFLRESAARSSPSMK-KNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred hccchHHHhhCCccchHHHHHHHHHHHHhhcCcccc-ccHHHHHHHHHHhhcchhHHHHH
Confidence 6665432 222 2333333333321 45566665566677788776653
No 356
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.85 E-value=87 Score=30.70 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
.++.....|...|.+.+|.++.++++.++|-+ ...+-.+.++|+..|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~--e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLS--EQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhh--hHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 45556678889999999999999999999998 88888999999999998888888887753
No 357
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=72.43 E-value=2.8 Score=47.74 Aligned_cols=11 Identities=45% Similarity=0.416 Sum_probs=5.4
Q ss_pred CCCCCCCCCCC
Q 046631 1 MASSSVPLPLP 11 (813)
Q Consensus 1 ~~~~~~~~~~~ 11 (813)
|+|.++..|||
T Consensus 1 ma~lppg~ppp 11 (2365)
T COG5178 1 MASLPPGNPPP 11 (2365)
T ss_pred CCCCCCCCCcc
Confidence 56655444433
No 358
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.19 E-value=1.4e+02 Score=31.68 Aligned_cols=159 Identities=16% Similarity=0.049 Sum_probs=103.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCC-CCCCH-------HHHHHHHHH-HhccCcHHHHHHHHHHHHHhcCCCCC--hhHHHHH
Q 046631 588 GYGQHGMSERALSLFRSMKGCG-IEPDA-------ITFVAVLSA-CSYAGLVDEGLQIFDLMQQEYKIQPS--TEHYCCV 656 (813)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~-------~~~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l 656 (813)
+-.-.|++.+|++-...|.+-- -.|.. .....++.- |...+.++.|...|....+. --.-| ...-..+
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNL 410 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhH
Confidence 3345799999999999998631 23331 123344443 45678899999988887765 22223 3333466
Q ss_pred HHHHhccCCHHHHHHHHHHhCcCC-ChH-------HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC----CchhHHH
Q 046631 657 ADMLGRVGKVVEAYEFVKELGEEG-NVL-------EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS----MPGYHVL 724 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~~~ 724 (813)
.-.|.+.|+-+.-.++++.+.-.. +.. .++..-+-....++++.+|+..+.+.+++.--.+ .+-..++
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvL 490 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVL 490 (629)
T ss_pred HHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 778899999888888888773221 111 1222222333567899999999998887642111 1345778
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHH
Q 046631 725 LSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 725 l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
|+.+....|+..++.++..-..+
T Consensus 491 Ls~v~lslgn~~es~nmvrpamq 513 (629)
T KOG2300|consen 491 LSHVFLSLGNTVESRNMVRPAMQ 513 (629)
T ss_pred HHHHHHHhcchHHHHhccchHHH
Confidence 89999999999999887665543
No 359
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.18 E-value=49 Score=26.78 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 046631 428 DVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEH 507 (813)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 507 (813)
++|..+.+.+...+...+.+.-.-+..+.+.|++++| +........||...|-+|-. .+.|-.+++...+.++...
T Consensus 23 ~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 23 QEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3444444444443332223333455667788889888 34444433788888877643 4778888888888877766
Q ss_pred CCCCCHHHH
Q 046631 508 NVTPNVVTI 516 (813)
Q Consensus 508 ~~~p~~~t~ 516 (813)
| .|....|
T Consensus 99 g-~~~~q~F 106 (116)
T PF09477_consen 99 G-SPELQAF 106 (116)
T ss_dssp S-SHHHHHH
T ss_pred C-CHHHHHH
Confidence 5 4444443
No 360
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.92 E-value=49 Score=26.41 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=40.0
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 046631 556 DMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITF 617 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 617 (813)
..+.+.|++++|..+.+...-||...|-+|... +.|-.+++..-+.+|..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 445677888888888888777888888766543 5566666666666776665 4444444
No 361
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.03 E-value=39 Score=36.52 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=62.3
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHH
Q 046631 454 MYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGK 533 (813)
Q Consensus 454 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 533 (813)
...+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+-+...
T Consensus 646 lal~lgrl~iA~~la~e~~----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 3456677777777665544 556788888888888888888888776543 344555555566655555
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 046631 534 QLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAK 573 (813)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (813)
.+-....+.|. .|.-.-+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 55455554442 23333445566666666666543
No 362
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.00 E-value=1.1e+02 Score=30.06 Aligned_cols=112 Identities=13% Similarity=0.020 Sum_probs=54.8
Q ss_pred CChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHH----HHCCCCCCHhhHHHHHHHhhCCCChh-HHHHH
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMM----LRMGIRPSTISFVNVFPALSSLGDYK-SADVV 248 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~~~ 248 (813)
+++++|.+++-. -...+.+.|+...|-++...| .+.++++|......++..+...+.-+ +-..+
T Consensus 4 kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~f 72 (260)
T PF04190_consen 4 KKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKF 72 (260)
T ss_dssp T-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHH
T ss_pred ccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHH
Confidence 677777776632 234566777776666655444 34566777666555555544332111 12222
Q ss_pred HHHHH---HhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcch
Q 046631 249 YGLLV---KLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEV 296 (813)
Q Consensus 249 ~~~~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 296 (813)
.+.++ +.+..-.-|+.....+...|.+.|++.+|+..|-....++...
T Consensus 73 i~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~ 123 (260)
T PF04190_consen 73 IKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFA 123 (260)
T ss_dssp HHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHH
T ss_pred HHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHH
Confidence 22222 2222211366777777888888888888877765443333333
No 363
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=70.86 E-value=2e+02 Score=33.10 Aligned_cols=218 Identities=12% Similarity=-0.020 Sum_probs=111.8
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCch-------hHHHHHHH-HHHhcCCHHHHHHHHhhCCC--------CCHhHHHHHHH
Q 046631 524 NPMGNIELGKQLHGFSIRYLLDQNV-------FVGTSLID-MYSKSGVINYAANVFAKIPE--------KNSVTYTTMIL 587 (813)
Q Consensus 524 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 587 (813)
...+++.+|..+..++...--.|+. ..+++|-. .....|+++.|.++.+.... ..+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3455666666666655543212111 12222221 23356788888877765442 35677778888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHH--HHhccCc--HHHHHHHHHHHHHhcCC-CC----ChhHHHH
Q 046631 588 GYGQHGMSERALSLFRSMKGCGIEPDAI---TFVAVLS--ACSYAGL--VDEGLQIFDLMQQEYKI-QP----STEHYCC 655 (813)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~--a~~~~g~--~~~a~~~~~~~~~~~~~-~p----~~~~~~~ 655 (813)
+..-.|++++|..+.++..+..-.-+.. .|..+.. .+...|. ..+....|......+.. .| -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999998888776542222332 2222322 3455663 23333334333322111 11 1344444
Q ss_pred HHHHHhccCCHHHHHHH----HHHh-CcCCChHHHH---HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHH---
Q 046631 656 VADMLGRVGKVVEAYEF----VKEL-GEEGNVLEIW---GSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVL--- 724 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~----~~~~-~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~--- 724 (813)
+..++.+ ++.+..- ++-- ...+.....+ ..|+......|+.++|.....++..+.-.......|..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555544 3333322 2221 1222222222 35667777889999999888887654332210222221
Q ss_pred --HHHHHHhcCCcHHHHHHHHH
Q 046631 725 --LSNIYAEEGNWENVDKVRKE 744 (813)
Q Consensus 725 --l~~~~~~~g~~~~A~~~~~~ 744 (813)
.......+|+.++|.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 11223466888888777655
No 364
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=69.87 E-value=1.2e+02 Score=29.95 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=68.5
Q ss_pred hHHHHHHHhhcCC-----CCcchHHHHHHHHHh-CC-CchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHH
Q 046631 279 FDFARKIFDNCLE-----RNTEVWNTMIGGYVQ-NN-HPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQ 351 (813)
Q Consensus 279 ~~~A~~~~~~~~~-----~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 351 (813)
+.+|+++|+.... .|...-..+++.... .+ ....-.++.+-.....|-.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 5667777773221 244555555555444 11 2222222332223445577788888888888888888888888
Q ss_pred HHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHH
Q 046631 352 LHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVY 400 (813)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 400 (813)
++...... ..+..|...|..+|......|+..-...+.+
T Consensus 224 fW~~~~~~----------~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPN----------SVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhccc----------CCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 87765542 1134577888888888888888665555444
No 365
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.66 E-value=51 Score=34.45 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=90.9
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcC-CChHHHHHHHHHHHHHhCCHHHHH
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEE-GNVLEIWGSLLGSCRLHGHSELAE 703 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~ 703 (813)
...|++-.|.+-+....+.+.-.|+ +...........|+++.+...+...... +....+...++......|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3567776666555555554343444 3444455677889999999998776321 222226677888888889999999
Q ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECCEEEEEe
Q 046631 704 VVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFA 769 (813)
Q Consensus 704 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 769 (813)
...+.++.-+..+ +.....-+..-...|-++++.-.|+++.......+.| |+..-...+.|-
T Consensus 378 s~a~~~l~~eie~--~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g--~v~~~~~~~~~~ 439 (831)
T PRK15180 378 STAEMMLSNEIED--EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG--WVNFLSSTQYFN 439 (831)
T ss_pred HHHHHHhccccCC--hhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc--ceeeeccceecc
Confidence 9999999877666 5554443334445577899999999988766544443 554444334443
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.54 E-value=12 Score=28.30 Aligned_cols=47 Identities=13% Similarity=0.043 Sum_probs=24.3
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHH
Q 046631 626 YAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEF 672 (813)
Q Consensus 626 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 672 (813)
.....++|+..|....+...-.|+ ..++.+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666655554221122 44555555666666666655544
No 367
>PRK10941 hypothetical protein; Provisional
Probab=69.40 E-value=35 Score=33.54 Aligned_cols=70 Identities=9% Similarity=-0.162 Sum_probs=54.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHV 723 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~ 723 (813)
..+.+-.+|.+.++++.|+...+.+ ...|+.+.-|.--+-.|.+.|.+..|..-++..++..|++ +....
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d--p~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED--PISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc--hhHHH
Confidence 3445667788888888888888886 5667777667777788888899999999999999998887 65543
No 368
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.40 E-value=55 Score=31.02 Aligned_cols=81 Identities=12% Similarity=0.033 Sum_probs=43.2
Q ss_pred HHhcCCHHHHHHHHhhCC--CCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHhccCcHHHH
Q 046631 558 YSKSGVINYAANVFAKIP--EKNS-VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVL-SACSYAGLVDEG 633 (813)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~a~~~~g~~~~a 633 (813)
|....+++.|...|.+.. .|+. .-|+.=+..+.+..+++.+.+=-++.++ +.||.+--...+ .+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 444455666666655544 3444 2344445556666666666655555555 556555333222 334455566666
Q ss_pred HHHHHHH
Q 046631 634 LQIFDLM 640 (813)
Q Consensus 634 ~~~~~~~ 640 (813)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 6666555
No 369
>PRK09687 putative lyase; Provisional
Probab=69.15 E-value=1.3e+02 Score=30.04 Aligned_cols=150 Identities=9% Similarity=-0.009 Sum_probs=71.0
Q ss_pred CCCcccHHHHHHHHHcCCCh----hHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhH--HHHHHHHHHHhCCCCCC
Q 046631 188 RRNVVAWNTIVSWYVKTERY----VEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKS--ADVVYGLLVKLGSEYVN 261 (813)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~--a~~~~~~~~~~~~~~~~ 261 (813)
.+|...=...+.++...|+. .+++.++..+... .|+...-...+.+++..+.... -......+...-.. +
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D--~ 140 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD--K 140 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC--C
Confidence 34444444555666666653 4567777666432 3455545555555544432110 11122222222222 4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCC-CchHHHHHHHHHHHhCCCCCChhhHHHHHHHh
Q 046631 262 DLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNN-HPVEAIELFVQVLELDEIVFDDVTFLSALSAV 340 (813)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~ 340 (813)
+..+....+.++++.|+.+....+..-+..+|...-...+.++.+.+ ....+...+...+. .++..+-...+.++
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aL 216 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGL 216 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHH
Confidence 56666667777777766443333334444455555555555555442 13345544423331 23444444455555
Q ss_pred cccCc
Q 046631 341 SQLQE 345 (813)
Q Consensus 341 ~~~~~ 345 (813)
.+.++
T Consensus 217 g~~~~ 221 (280)
T PRK09687 217 ALRKD 221 (280)
T ss_pred HccCC
Confidence 55444
No 370
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.71 E-value=8.7 Score=25.35 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 723 VLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
..|+.+|.+.|+.+.|.+++++..+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999988543
No 371
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.34 E-value=1.3e+02 Score=29.74 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=70.1
Q ss_pred CCcHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHhcC--CChHHHHHHHHHHHHh--CCCCcchHHHHHHHHHhcCCHHHH
Q 046631 390 GLDDEGLMLVYEMQK-QGFMIDSVTVTALLSAASNL--RNQDVGKQTHAYLLRH--GIHFEGMESYLIDMYAKSGLIKTA 464 (813)
Q Consensus 390 g~~~~A~~~~~~m~~-~g~~pd~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 464 (813)
..+.+|+.+|+.... ..+--|..+...+++..... .....-.++.+.+... +..+..+...++..+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 344567777763322 23566777777777776652 2333334455555543 333337777888888888888888
Q ss_pred HHHHhhcCCC---CCChhhHHHHHHHHHhCCChHHHHHH
Q 046631 465 RQIFEKNDSG---DRDQATWNAMIAGYTQNGLLEEAFVA 500 (813)
Q Consensus 465 ~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~ 500 (813)
.++++..... ..|...|..+|......|+..-...+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 8888864432 23777888888888888886544333
No 372
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=66.65 E-value=12 Score=38.97 Aligned_cols=86 Identities=10% Similarity=-0.103 Sum_probs=47.6
Q ss_pred HHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHH
Q 046631 659 MLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWEN 737 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 737 (813)
-+.+.+.++.|..++.++ ..+|+....|..-..++.+.+++..|+.-+.++++.+|.. ...|+.-+.++.+.+++.+
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~--~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY--IKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh--hheeeeccHHHHhHHHHHH
Confidence 334455555555555554 3444444223222345555666666666666666666665 5556656666666666666
Q ss_pred HHHHHHHHH
Q 046631 738 VDKVRKEMR 746 (813)
Q Consensus 738 A~~~~~~m~ 746 (813)
|...++...
T Consensus 91 A~~~l~~~~ 99 (476)
T KOG0376|consen 91 ALLDLEKVK 99 (476)
T ss_pred HHHHHHHhh
Confidence 666665544
No 373
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=66.17 E-value=47 Score=30.69 Aligned_cols=75 Identities=13% Similarity=0.059 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCC-CCcHHHHHHHHHHHHhcCChHHHH
Q 046631 208 VEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEY-VNDLFVASSAIFMYAELGCFDFAR 283 (813)
Q Consensus 208 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 283 (813)
+.|.+.|-.+...+.--+ ...-..+..+....+.+.+++++-.+.+..... .+|+.++.+|+..|-+.|+.+.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 567777777776654433 333334444444667778888877777654432 356777777777777777776663
No 374
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.84 E-value=62 Score=31.96 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=54.4
Q ss_pred CChhHHHHHHcccCC-CCc-----ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHH
Q 046631 174 SKYDLVCKVFDTMRR-RNV-----VAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADV 247 (813)
Q Consensus 174 g~~~~a~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 247 (813)
.+++++...+=.+.. ++. .+-.+.++.+. .-+.++++.++..=.+-|+-||.+++..+|+.+.+.+++..|.+
T Consensus 78 ~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~ 156 (418)
T KOG4570|consen 78 EEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAAS 156 (418)
T ss_pred cchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHH
Confidence 667777766655543 211 11112222222 33566888888887888888888888888888888888888887
Q ss_pred HHHHHHHhC
Q 046631 248 VYGLLVKLG 256 (813)
Q Consensus 248 ~~~~~~~~~ 256 (813)
+.-.|....
T Consensus 157 vvt~~~~qe 165 (418)
T KOG4570|consen 157 VVTEVMMQE 165 (418)
T ss_pred HHHHHHHHH
Confidence 776666544
No 375
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=65.23 E-value=12 Score=21.55 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 720 GYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..+..++.+|...|++++|...+++..+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35678899999999999999999888753
No 376
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=65.09 E-value=1.6e+02 Score=29.56 Aligned_cols=130 Identities=14% Similarity=0.072 Sum_probs=73.7
Q ss_pred CCHHHHHHHHhhCCCC-CHhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-------Cc
Q 046631 562 GVINYAANVFAKIPEK-NSVTYTTMILGYGQ----HGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYA-------GL 629 (813)
Q Consensus 562 g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~-------g~ 629 (813)
.+...|.+.|....+. +......|...|.. ..+..+|...|++..+.|..+...+...+...+... -+
T Consensus 91 ~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 91 RDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred ccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 3456666666644433 33444445555544 337788888888888877554322233333333322 12
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhC
Q 046631 630 VDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGR----VGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 630 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 697 (813)
...|...+.++... + +......++.+|.. ..+.++|..+|++....++ ......+. .+...|
T Consensus 171 ~~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 171 DKKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLG-LMYLNG 236 (292)
T ss_pred HHhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHH-HHHhcC
Confidence 34677777777655 3 44555555555533 3478888888888877676 32444444 555555
No 377
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=63.87 E-value=1.6e+02 Score=29.35 Aligned_cols=53 Identities=11% Similarity=0.044 Sum_probs=29.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHH
Q 046631 585 MILGYGQHGMSERALSLFRSMKGCGIEPDAI---TFVAVLSACSYAGLVDEGLQIFDL 639 (813)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~a~~~~g~~~~a~~~~~~ 639 (813)
|..+-.+.|+..+|.+.|+.+.+. .|-.. ....|+.+|....-+.+...++-+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445677777777777776653 22111 234566666665555555554433
No 378
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.08 E-value=96 Score=32.53 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=26.8
Q ss_pred HHhcCCHHHHHHHHhhCCCC--C---HhHHHHHHHHHHh--cCChHHHHHHHHHHHh
Q 046631 558 YSKSGVINYAANVFAKIPEK--N---SVTYTTMILGYGQ--HGMSERALSLFRSMKG 607 (813)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 607 (813)
+.+.+++..|.++|+.+... + ...+..+..+|.. .-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34666677777766665531 1 1234444444443 3455666666666554
No 379
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.81 E-value=30 Score=32.16 Aligned_cols=64 Identities=9% Similarity=-0.040 Sum_probs=52.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHH-hCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKE-LGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
...-+.-+.+.+.+++|+...++ .+.+|.....-..|+..++-.|++++|..-++-+-.+.|+.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 44456677888999999987654 57778666677888899999999999999999888898886
No 380
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.79 E-value=2.2e+02 Score=30.51 Aligned_cols=164 Identities=12% Similarity=0.028 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHH
Q 046631 510 TPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMI 586 (813)
Q Consensus 510 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 586 (813)
..|.....+++..+.......-.+.+-.+|...|- +...|-.+++.|... ..+.-..+++++.+ .|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 34566667777778777777777777777777653 445566777777766 44555666664443 3444444555
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 046631 587 LGYGQHGMSERALSLFRSMKGCGIEPDA-----ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLG 661 (813)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 661 (813)
.-|-+ ++.+.+..+|.+....-++-.. ..|.-|... -..+.+....+...+.+..|..--...+.-+..-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55544 7777777777777664222111 134333321 245666677777777666555444556666667777
Q ss_pred ccCCHHHHHHHHHHhCcC
Q 046631 662 RVGKVVEAYEFVKELGEE 679 (813)
Q Consensus 662 ~~g~~~~A~~~~~~~~~~ 679 (813)
...++++|++++..+.+.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 777888888887766443
No 381
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=61.89 E-value=24 Score=29.81 Aligned_cols=53 Identities=13% Similarity=0.293 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRK 743 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 743 (813)
+|-..+..| +....+|..+...+.....+..|...+..+...|++.+|.++++
T Consensus 71 iWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 71 IWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 565555543 23566777777665554447788888888999999999998885
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.67 E-value=25 Score=26.63 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=34.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHH
Q 046631 591 QHGMSERALSLFRSMKGCGIEPDA--ITFVAVLSACSYAGLVDEGLQIF 637 (813)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~g~~~~a~~~~ 637 (813)
..++.++|+..|+...+.-..|.. .++..++.+++..|++.+++.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888875433332 27788888999999988887753
No 383
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=61.50 E-value=6.8 Score=40.68 Aligned_cols=9 Identities=44% Similarity=0.848 Sum_probs=4.1
Q ss_pred CCCCCCCCC
Q 046631 5 SVPLPLPPP 13 (813)
Q Consensus 5 ~~~~~~~~~ 13 (813)
+.|.|.|.|
T Consensus 5 p~P~P~P~P 13 (465)
T PF01690_consen 5 PPPSPGPSP 13 (465)
T ss_pred CCCCCCCCC
Confidence 445554433
No 384
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=61.42 E-value=1.7e+02 Score=28.76 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=44.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 046631 546 QNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACS 625 (813)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~ 625 (813)
-++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++ |...-.. +--|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~Ra-VL~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARA-VLQYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHH-HHHHH
Confidence 36677788888899999999988887554444443332333333333332222 1111112 22455
Q ss_pred ccCcHHHHHHHHHHHHHh
Q 046631 626 YAGLVDEGLQIFDLMQQE 643 (813)
Q Consensus 626 ~~g~~~~a~~~~~~~~~~ 643 (813)
..+++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 677788888777666544
No 385
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=61.31 E-value=22 Score=22.20 Aligned_cols=30 Identities=17% Similarity=-0.016 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHH--HHHHhcCCC
Q 046631 685 IWGSLLGSCRLHGHSELAEVV--AKKLLEMDT 714 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~--~~~~~~~~p 714 (813)
.|..+...+...|++++|+.+ ++-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 455566666667777777777 335544444
No 386
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=61.09 E-value=14 Score=28.33 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHcCC-----ccCCCCCCCCCCC
Q 046631 778 SHKIYEMLERLAMEMRNAGN-----KTIQNSNVDATPR 810 (813)
Q Consensus 778 ~~~~~~~l~~l~~~~~~~~~-----~~~c~~c~~~~~~ 810 (813)
..++|+.|+.+.+.++..|+ -+.|+.|||..+.
T Consensus 33 ~~~v~~~L~hiak~lkr~g~~Llv~Pa~CkkCGfef~~ 70 (97)
T COG3357 33 EKEVYDHLEHIAKSLKRKGKRLLVRPARCKKCGFEFRD 70 (97)
T ss_pred hHHHHHHHHHHHHHHHhCCceEEecChhhcccCccccc
Confidence 46789999998888888874 3689999998765
No 387
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.72 E-value=51 Score=28.01 Aligned_cols=44 Identities=11% Similarity=0.155 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 046631 701 LAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKE 744 (813)
Q Consensus 701 ~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (813)
.+..+|+.+...+-....+..|..-+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777776554444478888888888888999998888865
No 388
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.86 E-value=21 Score=23.57 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=13.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 046631 585 MILGYGQHGMSERALSLFRSMKGC 608 (813)
Q Consensus 585 li~~~~~~g~~~~A~~~~~~m~~~ 608 (813)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555666666666666665543
No 389
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=59.62 E-value=3.3e+02 Score=31.54 Aligned_cols=219 Identities=14% Similarity=0.047 Sum_probs=104.9
Q ss_pred HhcCCHHHHHHHHhhcCCC--CCC-------hhhHHHHHH-HHHhCCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 046631 456 AKSGLIKTARQIFEKNDSG--DRD-------QATWNAMIA-GYTQNGLLEEAFVAFRQMLEH----NVTPNVVTIASVLP 521 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~--~~~-------~~~~~~li~-~~~~~~~~~~A~~~~~~m~~~----~~~p~~~t~~~ll~ 521 (813)
....++++|..+..+.... .|+ ...|+++-. .....|++++|+++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4456677777666653211 111 114555533 234457778887777765543 12334445555666
Q ss_pred HhccCCChHHHHHHHHHHHHcCCCCchhHHHHH-----HHHHHhcCCHHHHH--HHHhhCC-----CC-----CHhHHHH
Q 046631 522 ACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSL-----IDMYSKSGVINYAA--NVFAKIP-----EK-----NSVTYTT 584 (813)
Q Consensus 522 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~--~~~~~~~-----~~-----~~~~~~~ 584 (813)
+..-.|++++|..+.....+..-.-+...+... ...+...|+...|. ..|.... +. -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 666778888887777665554222233322222 12244556332222 2222221 11 1223344
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC----ChhHHHHHH
Q 046631 585 MILGYGQH-GMSERALSLFRSMKGCGIEPDAIT--FVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP----STEHYCCVA 657 (813)
Q Consensus 585 li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~ 657 (813)
+..++.+. +...++..-+.-.......|-... +..|+......|+.++|...++++..- ...+ +-.+-...+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHHh
Confidence 44444431 111222222222222212222222 225566677788888888888887654 2333 211112222
Q ss_pred --HHHhccCCHHHHHHHHHH
Q 046631 658 --DMLGRVGKVVEAYEFVKE 675 (813)
Q Consensus 658 --~~~~~~g~~~~A~~~~~~ 675 (813)
......|+.++|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 223467888877777665
No 390
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=58.81 E-value=24 Score=27.85 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 703 EVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 703 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
...+++.++.+|++ ......++..+...|++++|.+.+-.+.+..
T Consensus 8 ~~al~~~~a~~P~D--~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDD--LDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44567778889999 8999999999999999999999988888553
No 391
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=58.61 E-value=68 Score=29.97 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 046631 194 WNTIVSWYVKTERYVEAVRQFRMMLRMGIRP-STISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIF 271 (813)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 271 (813)
.+.-++.+.+.+...+++.+.+.-.+. +| |..+-..+++.+|-.|++++|..-++.+.+..+...+-...|..+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344566677777777777777766554 33 33455666777777777777777777666665442233344444443
No 392
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=58.46 E-value=4e+02 Score=32.06 Aligned_cols=254 Identities=11% Similarity=0.007 Sum_probs=140.4
Q ss_pred HhhhcCCCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCC
Q 046631 60 QLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSN 139 (813)
Q Consensus 60 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 139 (813)
.+.+.+..+++..--..+..+.+.+. +++...+....... +...-...+.++.+.+........+...+. .
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D~-----d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~ 695 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGDG-----AAAVRRAAAEGLRELVEVLPPAPALRDHLG---S 695 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHhccCchHHHHHHhc---C
Confidence 45555567777777777777777765 44666666665432 333444555555443321111223333332 2
Q ss_pred CChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHH
Q 046631 140 PSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLR 219 (813)
Q Consensus 140 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 219 (813)
+|..+....+..+...+. +. ...+...+..+|...=...+.++.+.+..+. +.....
T Consensus 696 ~d~~VR~~A~~aL~~~~~----------------~~---~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~ 752 (897)
T PRK13800 696 PDPVVRAAALDVLRALRA----------------GD---AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT 752 (897)
T ss_pred CCHHHHHHHHHHHHhhcc----------------CC---HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc
Confidence 566777777777655410 22 2344455666776666666777776655432 222222
Q ss_pred CCCCCCHhhHHHHHHHhhCCCChhH-HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHH-HHHhhcCCCCcchH
Q 046631 220 MGIRPSTISFVNVFPALSSLGDYKS-ADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFAR-KIFDNCLERNTEVW 297 (813)
Q Consensus 220 ~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~ 297 (813)
.++...-.....++...+..+. +...+..+.+ . +|..+..+.+..+.+.|..+.+. .+...+..++...-
T Consensus 753 ---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D--~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR 824 (897)
T PRK13800 753 ---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---D--PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVR 824 (897)
T ss_pred ---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---C--CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHH
Confidence 3455555556666666654432 2233333332 2 67888888888888888766553 34444445566666
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH
Q 046631 298 NTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK 358 (813)
Q Consensus 298 ~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 358 (813)
...+.++...+. .++...+...+. .|+...-...+.++.+...-..+...+..+.+
T Consensus 825 ~~Aa~aL~~l~~-~~a~~~L~~~L~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 825 QGAARALAGAAA-DVAVPALVEALT----DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHhccc-cchHHHHHHHhc----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 667777777765 345555534443 45566666667777665333455555555554
No 393
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=57.27 E-value=20 Score=33.48 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=34.0
Q ss_pred HhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 660 LGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 660 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
..+.|+.+.|.+++.+. ...|.....|..+...-.+.|+++.|.+.+++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34555666666666554 3334444466666666666666666666666666666664
No 394
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=57.25 E-value=13 Score=40.95 Aligned_cols=7 Identities=29% Similarity=0.302 Sum_probs=3.2
Q ss_pred CCChHHH
Q 046631 775 HPQSHKI 781 (813)
Q Consensus 775 ~~~~~~~ 781 (813)
|+..+++
T Consensus 790 ~g~~edi 796 (830)
T KOG1923|consen 790 HGAFEDI 796 (830)
T ss_pred cccHHHH
Confidence 4444444
No 395
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=56.57 E-value=40 Score=36.25 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=59.9
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHH
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSEL 701 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 701 (813)
...|+...|...+..+. ...|. ......|...+.+.|..-+|-.++.+. ...-..+..+..++.++....+.+.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 34567777777666554 44553 344555666777777767777666553 2222233356667777777777788
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHH
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
|++.++.+++++|++ +..-.-|
T Consensus 695 a~~~~~~a~~~~~~~--~~~~~~l 716 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKC--PECENSL 716 (886)
T ss_pred HHHHHHHHHhcCCCC--hhhHHHH
Confidence 888888888777777 5554444
No 396
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.60 E-value=1.2e+02 Score=29.71 Aligned_cols=55 Identities=7% Similarity=0.065 Sum_probs=27.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 046631 485 IAGYTQNGLLEEAFVAFRQMLEH--NVTPNVVTIASVLPACNPMGNIELGKQLHGFSIR 541 (813)
Q Consensus 485 i~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 541 (813)
|.+++..++|.+++...-+--+. .++|... -.-|-.|++.+....+.++-....+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 67777778887777655443331 2333322 2222334445555444444444443
No 397
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=55.33 E-value=2.7e+02 Score=29.22 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIPEK---NSVTYTTMILGYGQHGMSERALSLFRSMKGCG 609 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 609 (813)
...|+.-|.-.|++.+|.+.++++.-| ....+.+++.+.-+.|+-+.-+.++++.-..|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 345677788889999999988888765 46678888888888888777777777666555
No 398
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.94 E-value=89 Score=26.57 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHH
Q 046631 632 EGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKE 675 (813)
Q Consensus 632 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 675 (813)
++.++|..|... |+--. +..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 566666666665 55554 55566666666666666666666653
No 399
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.59 E-value=2e+02 Score=27.50 Aligned_cols=103 Identities=24% Similarity=0.231 Sum_probs=50.0
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHH
Q 046631 582 YTTMILGYG--QHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVAD 658 (813)
Q Consensus 582 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 658 (813)
|...+.++. .++++++|++.+-.- .+.|+.. .-++.++...|+.+.|..+++.+. -.+ +......+..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~----p~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVG----PPLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcC----CCCCCHHHHHHHHH
Confidence 333444433 345566666555221 1222211 135555555677777777765442 111 2333333333
Q ss_pred HHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHH
Q 046631 659 MLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRL 695 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 695 (813)
. ..+|.+.||..+.+......... .|..++..|..
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~-l~e~l~~~~~~ 184 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRR-LFEQLLEHCLE 184 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHH-HHHHHHHHHHH
Confidence 3 45577777777777664422222 55555555553
No 400
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=53.91 E-value=4.7e+02 Score=31.48 Aligned_cols=184 Identities=8% Similarity=-0.050 Sum_probs=85.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 046631 546 QNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACS 625 (813)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~ 625 (813)
+|..+-...++.+...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.++...-...+.++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHH
Confidence 4445555555555543311 12233444455666555555666655544322 12222 2445555555555555
Q ss_pred ccCcHHH-HHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHH
Q 046631 626 YAGLVDE-GLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEV 704 (813)
Q Consensus 626 ~~g~~~~-a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 704 (813)
..+..+. +...+..+.+ .+|...-...+..+.+.|.-+.+...+..+..+++.. +-...+.++...+. +++..
T Consensus 768 ~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~-VR~~Aa~aL~~l~~-~~a~~ 841 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQ-VRQGAARALAGAAA-DVAVP 841 (897)
T ss_pred HhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChH-HHHHHHHHHHhccc-cchHH
Confidence 5554322 2333334432 2556666666777777776554444444443444433 44455555555543 33445
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 705 VAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 705 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
.+..+++ +|+ ...-..-++++.+.+.-.++...+..+.+
T Consensus 842 ~L~~~L~-D~~---~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 842 ALVEALT-DPH---LDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhc-CCC---HHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5444442 222 23333333444443223355555555543
No 401
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=53.81 E-value=1.5e+02 Score=28.99 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=49.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh--
Q 046631 586 ILGYGQHGMSERALSLFRSMKGC--GIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLG-- 661 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-- 661 (813)
|.+++..++|.+++...-+--+. .++|...-.+ |-.|.+.|....+.++-...... .-+-+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 56667777777766544333221 1344333333 33467777777777777666644 11112444666665554
Q ss_pred ---ccCCHHHHHHHHH
Q 046631 662 ---RVGKVVEAYEFVK 674 (813)
Q Consensus 662 ---~~g~~~~A~~~~~ 674 (813)
=.|.+++|++++.
T Consensus 167 VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVV 182 (309)
T ss_pred HHhccccHHHHHHHHh
Confidence 4688888888874
No 402
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.55 E-value=90 Score=28.30 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=12.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHhc
Q 046631 690 LGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 690 ~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
...|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3445555555555555555555
No 403
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=53.34 E-value=10 Score=26.44 Aligned_cols=20 Identities=20% Similarity=0.054 Sum_probs=17.0
Q ss_pred HHHHHcCCccCCCCCCCCCC
Q 046631 790 MEMRNAGNKTIQNSNVDATP 809 (813)
Q Consensus 790 ~~~~~~~~~~~c~~c~~~~~ 809 (813)
.+-++.|+.|.|..|||.|+
T Consensus 42 ~~CRk~g~~Y~Cp~CGF~GP 61 (61)
T COG2888 42 AKCRKLGNPYRCPKCGFEGP 61 (61)
T ss_pred hhHHHcCCceECCCcCccCC
Confidence 45677899999999999874
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.76 E-value=47 Score=26.41 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=36.5
Q ss_pred HHhCCHHHHHHHHHHHhcCCCCCCC-------chhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 694 RLHGHSELAEVVAKKLLEMDTRNSM-------PGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 694 ~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
.+.||+..|.+.+.+.++....... ......++.++...|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3467777777766666654332211 23344577888899999999999988874
No 405
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=52.56 E-value=1.4e+02 Score=26.09 Aligned_cols=66 Identities=8% Similarity=0.146 Sum_probs=44.4
Q ss_pred CChhHHHHHHcccCC---------CCcccHHHHHHHHHcCCC-hhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCC
Q 046631 174 SKYDLVCKVFDTMRR---------RNVVAWNTIVSWYVKTER-YVEAVRQFRMMLRMGIRPSTISFVNVFPALSSL 239 (813)
Q Consensus 174 g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 239 (813)
+.+....++++.+.. .+-.+|..++.+.+...- ---+..+|.-|.+.+.+++..-|..+|.++.+-
T Consensus 53 ~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 53 QNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 666666666666541 345577778777766555 334567777777777777888888888777553
No 406
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.82 E-value=69 Score=26.84 Aligned_cols=58 Identities=9% Similarity=-0.001 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHH
Q 046631 394 EGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYL 451 (813)
Q Consensus 394 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 451 (813)
+..+-++.+..-++.|++...-..+++|.+.+++..|.++++.+...-.....+|..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3445566666677899999999999999999999999888887765433332334333
No 407
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=51.76 E-value=2.6e+02 Score=27.94 Aligned_cols=165 Identities=14% Similarity=0.219 Sum_probs=92.0
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 046631 534 QLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP-EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP 612 (813)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 612 (813)
-+++.+...++-++......-++.+.+.+..+-+.+++..+. ..|.. +.+ .. +-.+.+.-++++.+. +.|
T Consensus 21 PLlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p--~a~----~e--kr~~Vla~lkeLe~e-v~p 91 (432)
T KOG2758|consen 21 PLLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMP--NAL----VE--KRTEVLAELKELEEE-VAP 91 (432)
T ss_pred HHHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccch--HHH----HH--HHHHHHHHHHHHHHH-HHH
Confidence 345555556666677777777888888888888888888763 11110 111 10 112222233333321 111
Q ss_pred CHHHH-H-HHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHH---HHhCcCCCh---H
Q 046631 613 DAITF-V-AVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFV---KELGEEGNV---L 683 (813)
Q Consensus 613 ~~~~~-~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~~~---~ 683 (813)
=...+ + .++.+ ...-.+....++.+.+.+++.|+ ..+.-....-...+|++..|-.++ ..+...++. .
T Consensus 92 iv~~le~Pd~~~~---~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~ls 168 (432)
T KOG2758|consen 92 IVKVLENPDLIAA---LRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLS 168 (432)
T ss_pred HHHHHcCHHHHHH---HHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHH
Confidence 00000 0 11111 12223346777888888999998 777777888888999999998764 333333332 2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 684 EIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
..|+.|.+--. .-+++.|.+-+.++.+
T Consensus 169 alwGKlASEIL-~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 169 ALWGKLASEIL-TQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 26766665443 3467777776655543
No 408
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.36 E-value=71 Score=26.24 Aligned_cols=27 Identities=15% Similarity=0.443 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 046631 480 TWNAMIAGYTQNGLLEEAFVAFRQMLE 506 (813)
Q Consensus 480 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 506 (813)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588999999999999999999998877
No 409
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.11 E-value=1e+02 Score=30.94 Aligned_cols=95 Identities=11% Similarity=-0.024 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhC----cCCCh-HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKELG----EEGNV-LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVL 724 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~ 724 (813)
..+|.-=++-|.+..++..|...|.+-. .+|+. ...|+.-..+-...|++..++.-..+++..+|.+ ...|+-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h--~Ka~~R 158 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH--LKAYIR 158 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhhhhh
Confidence 4556666778889999999999987751 22322 2256666666667799999999999999999998 888888
Q ss_pred HHHHHHhcCCcHHHHHHHHHHH
Q 046631 725 LSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 725 l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
=+.++....++++|..+.++..
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
Confidence 8888888888777777666543
No 410
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=50.90 E-value=22 Score=37.76 Aligned_cols=21 Identities=38% Similarity=0.740 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCCCCCCCCcc
Q 046631 5 SVPLPLPPPPPTATPPPPQLP 25 (813)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (813)
.+|.||||||||-...++...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~ 34 (461)
T PLN03132 14 ATPQPPPPPPPPEKTHFGGLK 34 (461)
T ss_pred CCCCCcccCCCCcccCCCccc
Confidence 445555554444444444443
No 411
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=49.85 E-value=3e+02 Score=28.10 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhc---cCCHHHHH
Q 046631 595 SERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGR---VGKVVEAY 670 (813)
Q Consensus 595 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~A~ 670 (813)
.+.-+.++++.++.+ +-+......++..+.+..+.++..+-++++... .| +...|...++.... .-.+++..
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 356677788877763 234456667777778887888888888888765 45 36666666665543 22455555
Q ss_pred HHHHHh-------CcCC-----Ch-------HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 046631 671 EFVKEL-------GEEG-----NV-------LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 671 ~~~~~~-------~~~~-----~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 714 (813)
.+|.+. .... .. ..++..+...+...|..+.|..+++.+++++-
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 554442 1111 11 12444455566778999999999999998763
No 412
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=49.74 E-value=2.4e+02 Score=26.88 Aligned_cols=137 Identities=14% Similarity=0.175 Sum_probs=74.6
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchH
Q 046631 269 AIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDL 348 (813)
Q Consensus 269 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 348 (813)
.+..|.+.-++..|-..++++.+|= .+-.+++ -|.+..+.+---++. +..+..+++-+..-+..++- ...||..+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPI-QSRCAiL-Rysklsd~qiL~Rl~-~v~k~Ekv~yt~dgLeaiif--ta~GDMRQ 210 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPI-QSRCAIL-RYSKLSDQQILKRLL-EVAKAEKVNYTDDGLEAIIF--TAQGDMRQ 210 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhH-HhhhHhh-hhcccCHHHHHHHHH-HHHHHhCCCCCcchHHHhhh--hccchHHH
Confidence 4556666666666666666666651 1111222 233333322222333 55556666666665555543 35688888
Q ss_pred HHHHHHHHHHh--cccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHh
Q 046631 349 GQQLHAYIIKN--FVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSV 412 (813)
Q Consensus 349 a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 412 (813)
|...++.-..| +... ..+......|.......++..+ ..+++++|.+.+.++-+.|+.|...
T Consensus 211 alNnLQst~~g~g~Vn~-enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 211 ALNNLQSTVNGFGLVNQ-ENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred HHHHHHHHhccccccch-hhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHH
Confidence 88777766663 2222 3333333455555555555543 3466777777777777777766543
No 413
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=49.58 E-value=7.5e+02 Score=32.62 Aligned_cols=66 Identities=20% Similarity=0.186 Sum_probs=56.7
Q ss_pred ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 681 NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 681 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
.....|-.....++..|.++.|....-++.+..+ +..+.-.+..+...|+...|..++++-.+...
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~----~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESRL----PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc----chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 4456899999999999999999998888877663 67888899999999999999999999886643
No 414
>PRK12798 chemotaxis protein; Reviewed
Probab=49.34 E-value=3.4e+02 Score=28.52 Aligned_cols=151 Identities=16% Similarity=0.228 Sum_probs=81.7
Q ss_pred cCCHHHHHHHHhhCCC----CCHhHHHHHHHHH-HhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCcHH
Q 046631 561 SGVINYAANVFAKIPE----KNSVTYTTMILGY-GQHGMSERALSLFRSMKGCGIEPDAI----TFVAVLSACSYAGLVD 631 (813)
Q Consensus 561 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~a~~~~g~~~ 631 (813)
.|+.++|.+.+..+.. +....|-.|+.+- ....+..+|+++|++..- .-|-.. ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4666666666666652 2344555555543 334567777777777654 334322 2333333456677777
Q ss_pred HHHHHHHHHHHhcCCCCChhHH-HHHHHHHhccC---CHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHH
Q 046631 632 EGLQIFDLMQQEYKIQPSTEHY-CCVADMLGRVG---KVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAK 707 (813)
Q Consensus 632 ~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 707 (813)
++..+-.....+|...|=...| ..++..+.+.+ ..+.-..++..|... ....+|-.+...-...|+.+.|....+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~-~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPE-RQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCch-hHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7776666666665555532222 22222332222 333434444444322 222366667777777777777777777
Q ss_pred HHhcCCC
Q 046631 708 KLLEMDT 714 (813)
Q Consensus 708 ~~~~~~p 714 (813)
++..+..
T Consensus 282 ~A~~L~~ 288 (421)
T PRK12798 282 RALKLAD 288 (421)
T ss_pred HHHHhcc
Confidence 7776653
No 415
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.03 E-value=22 Score=40.03 Aligned_cols=97 Identities=21% Similarity=0.272 Sum_probs=53.2
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHH
Q 046631 621 LSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 621 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 700 (813)
|.-+.+.|-.+-|+.+.+.-..+ ..+...+|+++.|++.-+++ +.++.|..|+.....+|+.+
T Consensus 627 IaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkl----dd~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 627 IAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKL----DDKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhc----CcHHHHHHHHHHHHHhcchH
Confidence 33345566666666554332222 23344677777777766654 23347777777777777777
Q ss_pred HHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 046631 701 LAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKE 744 (813)
Q Consensus 701 ~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (813)
-|+..|++.-. +..|.-+|.-.|+.++-.++.+.
T Consensus 690 IaEm~yQ~~kn----------fekLsfLYliTgn~eKL~Km~~i 723 (1202)
T KOG0292|consen 690 IAEMCYQRTKN----------FEKLSFLYLITGNLEKLSKMMKI 723 (1202)
T ss_pred HHHHHHHHhhh----------hhheeEEEEEeCCHHHHHHHHHH
Confidence 77777765432 22233345555555554444333
No 416
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.94 E-value=3.6e+02 Score=28.79 Aligned_cols=92 Identities=14% Similarity=0.035 Sum_probs=47.2
Q ss_pred HHHhCCChHHHHHHHHHHHHCC-CCCC--HHH-----HHHHHHH-hccCCChHHHHHHHHHHHHcCCCCchh--HHHHHH
Q 046631 487 GYTQNGLLEEAFVAFRQMLEHN-VTPN--VVT-----IASVLPA-CNPMGNIELGKQLHGFSIRYLLDQNVF--VGTSLI 555 (813)
Q Consensus 487 ~~~~~~~~~~A~~~~~~m~~~~-~~p~--~~t-----~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li 555 (813)
+=.-.|++.+|++-..+|.+-- -.|. ... ...++.. |+..+-.+.|+.-|....+.--..|.. .-..+.
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLA 411 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHH
Confidence 3355799999999988887631 2333 111 1112222 344455666666555554432222222 122334
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC
Q 046631 556 DMYSKSGVINYAANVFAKIPEKN 578 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~ 578 (813)
-.|.+.|+.+.-.++++.+..+|
T Consensus 412 i~YL~~~~~ed~y~~ld~i~p~n 434 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLIGPLN 434 (629)
T ss_pred HHHHHhccHHHHHHHHHhcCCCC
Confidence 44666666666666666555443
No 417
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=48.75 E-value=1.8e+02 Score=25.34 Aligned_cols=101 Identities=12% Similarity=0.040 Sum_probs=66.6
Q ss_pred HHhCCCCCChhh--HHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCC-cHHHHH
Q 046631 321 LELDEIVFDDVT--FLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGL-DDEGLM 397 (813)
Q Consensus 321 m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~ 397 (813)
|+..+..++..+ .+.++...+.-++......+++.+..-... +.....+...|.+++.+..+..- ---+..
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~------~~~~~~~~ssf~~if~SlsnSsSaK~~~~~ 101 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTD------NIIGWLDNSSFHIIFKSLSNSSSAKLTSLT 101 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHH------HHhhhcccchHHHHHHHHccChHHHHHHHH
Confidence 344444444432 466777766667776666666666431000 00024567789999999966666 345778
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhcCCCh
Q 046631 398 LVYEMQKQGFMIDSVTVTALLSAASNLRNQ 427 (813)
Q Consensus 398 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 427 (813)
+|.-|++.+.+++..-|..++.+|.+-...
T Consensus 102 Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 102 LFNFLKKNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Confidence 899999888999999999999998775433
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.57 E-value=74 Score=29.55 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=14.8
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 647 QPSTEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 647 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
.|++..|..++.++...|+.++|.++..++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555555555555555554444443
No 419
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=48.52 E-value=3.4e+02 Score=28.28 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=10.5
Q ss_pred HHHHHHHHhccCcHHHHHHHH
Q 046631 617 FVAVLSACSYAGLVDEGLQIF 637 (813)
Q Consensus 617 ~~~ll~a~~~~g~~~~a~~~~ 637 (813)
.+.|++.|.+.+.++.|..+.
T Consensus 212 iN~LLr~yL~n~lydqa~~lv 232 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLV 232 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHh
Confidence 444445555555555555443
No 420
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.33 E-value=1.2e+02 Score=23.57 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=28.0
Q ss_pred hcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHH
Q 046631 560 KSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERAL 599 (813)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 599 (813)
..|+.+.|.+++..+. .....|...+.++...|+.+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577777777777777 67777777777777777655554
No 421
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=48.15 E-value=3.4e+02 Score=28.25 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH-hcCCcHHHHHHHHHHHH
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA-EEGNWENVDKVRKEMRE 747 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 747 (813)
..+..+.+.|-+.-|.++.+-++.++|..+ |....+..+.|+ +.++++--.++.+....
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~D-P~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDED-PLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 345677788999999999999999999933 655555556665 56777766777766554
No 422
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=47.74 E-value=2.2e+02 Score=31.00 Aligned_cols=56 Identities=13% Similarity=0.197 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC--CHhHHH---HHHHHHHhcCChHHHHHHHHHHHh
Q 046631 552 TSLIDMYSKSGVINYAANVFAKIPEK--NSVTYT---TMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
..++.-|.+.+++++|..++..|.-. ....|. .+.+.+.+..-..+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45667888999999999999888621 222333 333344444333444444444443
No 423
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.49 E-value=3.1e+02 Score=27.58 Aligned_cols=24 Identities=8% Similarity=0.057 Sum_probs=12.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHH
Q 046631 617 FVAVLSACSYAGLVDEGLQIFDLM 640 (813)
Q Consensus 617 ~~~ll~a~~~~g~~~~a~~~~~~~ 640 (813)
+.....-|++.|+.+.|.+.+++.
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 334444555666666655555444
No 424
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=47.29 E-value=1.9e+02 Score=24.93 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 611 EPDAITFVAVLSACSYAG---LVDEGLQIFDLMQQEYKIQPS--TEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 611 ~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
.++..+-..+..++.++. ++.+++.+++++.+. -.|+ ....--|.-++.|.|+++++.++++.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 333444444444444433 344455555555431 1222 222223444455555555555555544
No 425
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.19 E-value=44 Score=24.07 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=9.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHHH
Q 046631 619 AVLSACSYAGLVDEGLQIFDLMQ 641 (813)
Q Consensus 619 ~ll~a~~~~g~~~~a~~~~~~~~ 641 (813)
.+|.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444444444444444443
No 426
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=46.17 E-value=3.3e+02 Score=28.37 Aligned_cols=30 Identities=3% Similarity=-0.359 Sum_probs=18.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 046631 586 ILGYGQHGMSERALSLFRSMKGCGIEPDAI 615 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 615 (813)
+..+...+++..|.++|+++....+.|+..
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~ 166 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNH 166 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhh
Confidence 334556677777777777777765444443
No 427
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=45.94 E-value=32 Score=33.46 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=15.3
Q ss_pred CchhhhHHHHHhhc-CCcchHHHhhhcC
Q 046631 39 TPTIRSRLSKICQE-GRPHLARQLFDSI 65 (813)
Q Consensus 39 ~~~~~~~l~~~~~~-g~~~~A~~~~~~~ 65 (813)
|+..+.+-...... ++...|.++|+-+
T Consensus 30 DP~aLERaAkAlrel~~S~~Ak~afel~ 57 (276)
T PF12037_consen 30 DPEALERAAKALRELNSSPHAKKAFELM 57 (276)
T ss_pred CcHHHHHHHHHHHHHhcChhHHHHHHHH
Confidence 44555555555555 5556666666643
No 428
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=45.91 E-value=40 Score=32.97 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=21.6
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHH
Q 046631 626 YAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFV 673 (813)
Q Consensus 626 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 673 (813)
+.|+.++|..+|+... .+.|+ +..+..++.......++-+|-..+
T Consensus 128 ~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred hccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 4555555555555554 33453 444444444444444444444443
No 429
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=45.74 E-value=16 Score=25.64 Aligned_cols=20 Identities=15% Similarity=-0.024 Sum_probs=16.9
Q ss_pred HHHHHcCCccCCCCCCCCCC
Q 046631 790 MEMRNAGNKTIQNSNVDATP 809 (813)
Q Consensus 790 ~~~~~~~~~~~c~~c~~~~~ 809 (813)
.+-++.++.|.|-.|||.|+
T Consensus 40 ~~CRk~~~~Y~CP~CGF~GP 59 (59)
T PRK14890 40 EKCRKQSNPYTCPKCGFEGP 59 (59)
T ss_pred hhHHhcCCceECCCCCCcCc
Confidence 45777889999999999885
No 430
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.69 E-value=3.4e+02 Score=27.48 Aligned_cols=126 Identities=12% Similarity=0.099 Sum_probs=86.6
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc------cCcHHHHHHHHHHHHHhcCCCCC-
Q 046631 577 KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY------AGLVDEGLQIFDLMQQEYKIQPS- 649 (813)
Q Consensus 577 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~------~g~~~~a~~~~~~~~~~~~~~p~- 649 (813)
.|...|+- +-+++++.++++...++. |-....-..|.+|-- .-+|..-..+|+.+. .+.|+
T Consensus 262 QDr~lW~r--------~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSP 329 (415)
T COG4941 262 QDRSLWDR--------ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSP 329 (415)
T ss_pred cchhhhhH--------HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCC
Confidence 45556654 335788888888888764 888877777776632 236777778887776 45777
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhCcCC----ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKELGEEG----NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
+.+.|.-+- +.+..-.+.++..++.+..+| ... .+..-...+.+.|+.++|...|++++.+.++.
T Consensus 330 vV~LNRAVA-la~~~Gp~agLa~ve~L~~~~~L~gy~~-~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 330 VVTLNRAVA-LAMREGPAAGLAMVEALLARPRLDGYHL-YHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred eEeehHHHH-HHHhhhHHhHHHHHHHhhcccccccccc-cHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 444554433 333333566777777775553 233 56667788889999999999999999998876
No 431
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=45.21 E-value=3.3e+02 Score=27.20 Aligned_cols=178 Identities=12% Similarity=-0.010 Sum_probs=109.5
Q ss_pred CCHHHHHHHHhhCCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHH
Q 046631 562 GVINYAANVFAKIPE-KNSVTYTTMILGYGQ----HGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY----AGLVDE 632 (813)
Q Consensus 562 g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~~~ 632 (813)
+.+..|...+..... .+......+...|.. ..+..+|.++|+.+.+.|..+- ...|...+.. ..+..+
T Consensus 55 ~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a---~~~lg~~~~~G~gv~~d~~~ 131 (292)
T COG0790 55 PDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEA---LFNLGLMYANGRGVPLDLVK 131 (292)
T ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHH---HHhHHHHHhcCCCcccCHHH
Confidence 445555555554443 233333334444433 3467889999998888764332 2234444433 348899
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhcc----C---CHHHHHHHHHHhCcCCChHHHHHHHHHHHHH----hCCHHH
Q 046631 633 GLQIFDLMQQEYKIQPSTEHYCCVADMLGRV----G---KVVEAYEFVKELGEEGNVLEIWGSLLGSCRL----HGHSEL 701 (813)
Q Consensus 633 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g---~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 701 (813)
|..+++++.+. |..+-......+...|..- + +...|...+.++....+.. ....|...|.. ..|.++
T Consensus 132 A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~-a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 132 ALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPD-AQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred HHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHH-HHHHHHHHHHcCCCCCcCHHH
Confidence 99999999877 6544333455566666553 1 3347889999887666555 55555544432 237899
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHhcC---------------CcHHHHHHHHHHHHCC
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEG---------------NWENVDKVRKEMRERG 749 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~~ 749 (813)
|...++++-+.+. . .....++ ++...| +...|...+......+
T Consensus 210 A~~wy~~Aa~~g~-~---~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 210 AFRWYKKAAEQGD-G---AACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred HHHHHHHHHHCCC-H---HHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 9999999998876 2 3444555 666555 6666777777666544
No 432
>PHA02875 ankyrin repeat protein; Provisional
Probab=45.05 E-value=4.1e+02 Score=28.25 Aligned_cols=141 Identities=11% Similarity=0.079 Sum_probs=66.3
Q ss_pred CChhHHHHHHcccCCCC----cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhh--HHHHHHHhhCCCChhHHHH
Q 046631 174 SKYDLVCKVFDTMRRRN----VVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTIS--FVNVFPALSSLGDYKSADV 247 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~ 247 (813)
|+.+.+..+++.-...+ ..-+ +.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v-- 151 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI-- 151 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH--
Confidence 77777777766543211 1112 223333444544 44555556666654431 12233444455665443
Q ss_pred HHHHHHHhCCCCCCcHH--HHHHHHHHHHhcCChHHHHHHHhhcCCCCcc---hHHHHHHHHHhCCCchHHHHHHHHHHH
Q 046631 248 VYGLLVKLGSEYVNDLF--VASSAIFMYAELGCFDFARKIFDNCLERNTE---VWNTMIGGYVQNNHPVEAIELFVQVLE 322 (813)
Q Consensus 248 ~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~m~ 322 (813)
+.+.+.|.. ++.. ....-+...+..|..+-+..+++....++.. ...+++...+..|+.+-+ +.+.
T Consensus 152 --~~Ll~~g~~--~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv-----~~Ll 222 (413)
T PHA02875 152 --ELLIDHKAC--LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV-----RLFI 222 (413)
T ss_pred --HHHHhcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH-----HHHH
Confidence 334445543 2211 1122334445567777777777665544322 123444444555665433 3344
Q ss_pred hCCCCCCh
Q 046631 323 LDEIVFDD 330 (813)
Q Consensus 323 ~~g~~p~~ 330 (813)
..|..++.
T Consensus 223 ~~gad~n~ 230 (413)
T PHA02875 223 KRGADCNI 230 (413)
T ss_pred HCCcCcch
Confidence 56666654
No 433
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=43.84 E-value=4.3e+02 Score=28.12 Aligned_cols=333 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCC---CC
Q 046631 114 LKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRR---RN 190 (813)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~---~~ 190 (813)
+.+.+..|+++-.+.+.+.- ..+...+.+-+.=+.+-+-. |+++-...+.+.-.. +|
T Consensus 88 LWaAsaAGHl~vVk~L~~~g--a~VN~tT~TNStPLraACfD------------------G~leivKyLvE~gad~~Ian 147 (615)
T KOG0508|consen 88 LWAASAAGHLEVVKLLLRRG--ASVNDTTRTNSTPLRAACFD------------------GHLEIVKYLVEHGADPEIAN 147 (615)
T ss_pred hhHHhccCcHHHHHHHHHhc--CccccccccCCccHHHHHhc------------------chhHHHHHHHHcCCCCcccc
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhH--HHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHH
Q 046631 191 VVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISF--VNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASS 268 (813)
Q Consensus 191 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 268 (813)
..--+.|+-++.|.. .++.+.+.+.|..++..++ ++.+.-|+..|.++ +.+.+++.|..+..|.. -..
T Consensus 148 rhGhTcLmIa~ykGh-----~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vd----ivq~Ll~~ga~i~~d~~-Gmt 217 (615)
T KOG0508|consen 148 RHGHTCLMIACYKGH-----VDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVD----IVQLLLKHGAKIDVDGH-GMT 217 (615)
T ss_pred cCCCeeEEeeeccCc-----hHHHHHHHHhCCCcchhcccCchHHHhhhhcccHH----HHHHHHhCCceeeecCC-CCc
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCC--CcchHHHHHHHHHhCCC-chHHHHHHHHHHHhCCC----CCChhhHHHHHHHhc
Q 046631 269 AIFMYAELGCFDFARKIFDNCLER--NTEVWNTMIGGYVQNNH-PVEAIELFVQVLELDEI----VFDDVTFLSALSAVS 341 (813)
Q Consensus 269 li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~-~~~A~~~~~~~m~~~g~----~p~~~t~~~ll~~~~ 341 (813)
=+..-+..|..+....+.+....+ -......+-..|....+ .-.|+..+.+.|+..-. .+...++ ..+.+|.
T Consensus 218 PL~~Aa~tG~~~iVe~L~~~~~sr~~riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~-~p~~ay~ 296 (615)
T KOG0508|consen 218 PLLLAAVTGHTDIVERLLQCETSRESRIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPL-EPVLAYG 296 (615)
T ss_pred hHHHHhhhcchHHHHHHhcCCcchhhHHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCC-Cchhhhh
Q ss_pred ccCcchHHHHHHHHHHH--hcccchhhhhccCCC---CCcchHHH-HHHHHHHCCCcHHHHHHHH---HHHHCCCCCCHh
Q 046631 342 QLQELDLGQQLHAYIIK--NFVALPVIVLNAVIE---RDVVSWNT-MISAFVQNGLDDEGLMLVY---EMQKQGFMIDSV 412 (813)
Q Consensus 342 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~-li~~~~~~g~~~~A~~~~~---~m~~~g~~pd~~ 412 (813)
.........++-..... ........+...+.. ||+..|-. -...|+.+|+++..++++. +|+++.+.|-..
T Consensus 297 ~~re~~~~~elE~lv~D~d~~RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~Plsp 376 (615)
T KOG0508|consen 297 YGREVNNREELEELVEDPDEMRMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSP 376 (615)
T ss_pred hhhhcCCHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCc
Q ss_pred -HHHHHHHHHhcCCChHHHHHHHHHHHHh-----CCCCc-chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHH
Q 046631 413 -TVTALLSAASNLRNQDVGKQTHAYLLRH-----GIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMI 485 (813)
Q Consensus 413 -t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li 485 (813)
|.+++++.. ++|..|+.. ..... .....+.-.+...-.++.|...-..-. +|+...-+..+
T Consensus 377 mT~ssllsFa----------elFS~mL~d~~~~g~~~~~i~~~~~~~Vl~k~vlEvEra~~~t~~p~--d~~~~~k~l~~ 444 (615)
T KOG0508|consen 377 MTASSLLSFA----------ELFSFMLQDFAAKGSLGTQIGFDDLMGVLTKSVLEVERALALTREPL--DPAQYNKALYI 444 (615)
T ss_pred ccHHHHHHHH----------HHHHHHhhhhhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q ss_pred HHHH
Q 046631 486 AGYT 489 (813)
Q Consensus 486 ~~~~ 489 (813)
..+.
T Consensus 445 ~lhL 448 (615)
T KOG0508|consen 445 ILHL 448 (615)
T ss_pred HHHH
No 434
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.74 E-value=22 Score=25.63 Aligned_cols=30 Identities=27% Similarity=0.222 Sum_probs=19.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLE 506 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 506 (813)
|..-.-.+|.+|.+.|++++|.++.+++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444567777777777777777776654
No 435
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=43.62 E-value=3.4e+02 Score=26.90 Aligned_cols=69 Identities=10% Similarity=0.103 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hcCCCCCh
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQ----EYKIQPST 650 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~ 650 (813)
+++.....|...|.+.+|.++-++.+... +.+...+..|+..+...|+--.+.+.++++.+ .+|+..+-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdd 353 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDD 353 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcch
Confidence 44555667888888888888888887743 44556677778888888886666666655543 34666553
No 436
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.39 E-value=1.9e+02 Score=31.67 Aligned_cols=96 Identities=13% Similarity=0.041 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchhhhhccCCCCCcchHHHHHHHHHHC
Q 046631 311 VEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNAVIERDVVSWNTMISAFVQN 389 (813)
Q Consensus 311 ~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 389 (813)
++..+.+.+.+...|+..+......++... .|++..+...++.+.. +-......+...+..+.......+++++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 344444445555566665555555554443 2566666655555443 1111111222222233333344444444 44
Q ss_pred CCcHHHHHHHHHHHHCCCCC
Q 046631 390 GLDDEGLMLVYEMQKQGFMI 409 (813)
Q Consensus 390 g~~~~A~~~~~~m~~~g~~p 409 (813)
++.++|+.+++++...|..|
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 67777777777777776544
No 437
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.33 E-value=94 Score=20.97 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=27.9
Q ss_pred HHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 046631 385 AFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLS 419 (813)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 419 (813)
...+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34567888889999999999998888888776654
No 438
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.12 E-value=1.6e+02 Score=24.21 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466677777777777777777777665
No 439
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.01 E-value=6e+02 Score=29.59 Aligned_cols=22 Identities=5% Similarity=0.187 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC
Q 046631 451 LIDMYAKSGLIKTARQIFEKND 472 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~ 472 (813)
++..+.+.+.+++|.+++..-.
T Consensus 536 vv~~~~q~e~yeeaLevL~~~~ 557 (911)
T KOG2034|consen 536 VVSYWIQQENYEEALEVLLNQR 557 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 6666666666666666666543
No 440
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.84 E-value=44 Score=32.99 Aligned_cols=43 Identities=28% Similarity=0.309 Sum_probs=35.1
Q ss_pred CCcch-HHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHH
Q 046631 374 RDVVS-WNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTA 416 (813)
Q Consensus 374 ~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 416 (813)
+|..+ |+..|...++.||+++|+.++++..+.|+.--..+|..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 44444 67999999999999999999999999998766666644
No 441
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=42.76 E-value=59 Score=34.26 Aligned_cols=103 Identities=12% Similarity=0.077 Sum_probs=73.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc
Q 046631 586 ILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAV-LSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRV 663 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 663 (813)
+.-+...+.++.|+.++.+.++ +.|+...|... ..++.+.+++..|+.=+..+.+ ..|+ ...|-.-+.++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhH
Confidence 4445667889999999999999 67877655443 3688899999999887777764 4575 66666666777777
Q ss_pred CCHHHHHHHHHHh-CcCCChHHHHHHHHHHHH
Q 046631 664 GKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCR 694 (813)
Q Consensus 664 g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~ 694 (813)
+++.+|...|+.. ...|+.+ -....+.-|.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~-~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDP-DATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcH-HHHHHHHHHH
Confidence 8888888888776 4566666 3344444443
No 442
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.59 E-value=2.7e+02 Score=30.22 Aligned_cols=95 Identities=7% Similarity=0.055 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-h-cccchhhhhccCCCCCcchHHHHHHHHHHCCCc
Q 046631 315 ELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-N-FVALPVIVLNAVIERDVVSWNTMISAFVQNGLD 392 (813)
Q Consensus 315 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 392 (813)
+.+.+.+...|+..+......+... ..|+...|..+++++.. + .......+...+.-.+...+..++.+....+..
T Consensus 187 ~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~ 264 (484)
T PRK14956 187 DYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNH 264 (484)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcH
Confidence 3343444445555555554444332 23566666666655443 1 000101111111112222333333333333334
Q ss_pred HHHHHHHHHHHHCCCCCCH
Q 046631 393 DEGLMLVYEMQKQGFMIDS 411 (813)
Q Consensus 393 ~~A~~~~~~m~~~g~~pd~ 411 (813)
..|+.++.+|.+.|..|..
T Consensus 265 ~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 265 SKSLEILESLYQEGQDIYK 283 (484)
T ss_pred HHHHHHHHHHHHcCCCHHH
Confidence 4566666666666554443
No 443
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.38 E-value=1.6e+02 Score=22.96 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=24.7
Q ss_pred hcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHH
Q 046631 275 ELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEA 313 (813)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 313 (813)
..|+.+.|+++++.++ +....|..++.++-..|+-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3466667777777766 6666677777777666664443
No 444
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.30 E-value=83 Score=21.22 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=27.2
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 046631 200 WYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPA 235 (813)
Q Consensus 200 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 235 (813)
...+.|-..++..+++.|.+.|+..+...|..+++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 344677777888888888888888887777776653
No 445
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=41.90 E-value=3.4e+02 Score=28.24 Aligned_cols=139 Identities=6% Similarity=-0.096 Sum_probs=86.7
Q ss_pred CHhHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCHHHH--------HHHHHHHhccCcHHHHHHHHHHHHHhcCCC
Q 046631 578 NSVTYTTMILGY--GQHGMSERALSLFRSMKGCGIEPDAITF--------VAVLSACSYAGLVDEGLQIFDLMQQEYKIQ 647 (813)
Q Consensus 578 ~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 647 (813)
.+..|-.++-.+ ...+++++|..+-+.....-..-+..|+ ..+-.++-..|+...-..++....+.-.+.
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 355666555544 3457888998888876654233333333 333334556677666666666555432344
Q ss_pred CC----hhHHHHHHHHHhccCCHHHHHHHHHHhCc--CCC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 648 PS----TEHYCCVADMLGRVGKVVEAYEFVKELGE--EGN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 648 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.| ....|+|++.|...+.++.|.+++.+... ... .......++....-++++..|.+.+-.++...|++
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 33 55667888888888899999998888742 111 12123344555566788888888888888888874
No 446
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=41.28 E-value=1.3e+02 Score=25.41 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHc
Q 046631 497 AFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRY 542 (813)
Q Consensus 497 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 542 (813)
..+.++.+..-++.|++...-..+++|.+.+++..|.++++-++..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4455566666678888888888889999989988888888877754
No 447
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.18 E-value=1.3e+02 Score=33.70 Aligned_cols=97 Identities=15% Similarity=0.244 Sum_probs=58.0
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----------HHHHHHHHHhccCcHHHHHHHHHHHHHhc-CCC
Q 046631 579 SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI----------TFVAVLSACSYAGLVDEGLQIFDLMQQEY-KIQ 647 (813)
Q Consensus 579 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~ 647 (813)
..+...|+-.|....+++..+++.+.+.. -||.. .|.-.+.-=-+.|+-+.|+...-.+.+.- .+.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 34566777788888888999999988887 33321 12222322235678888888776666542 344
Q ss_pred CChhHHHHHHHH---------HhccCCHHHHHHHHHHh-CcCC
Q 046631 648 PSTEHYCCVADM---------LGRVGKVVEAYEFVKEL-GEEG 680 (813)
Q Consensus 648 p~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~-~~~~ 680 (813)
||.. ...+.+ |...+..+.|+++|++. ..+|
T Consensus 278 pDm~--Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP 318 (1226)
T KOG4279|consen 278 PDMY--CLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEP 318 (1226)
T ss_pred Ccee--eeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCc
Confidence 5532 222322 23455677788888776 3344
No 448
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=40.20 E-value=2.1e+02 Score=23.44 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=26.6
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 046631 556 DMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCG 609 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 609 (813)
..+.+.|++++|...=.....||...|-+|.. .+.|-.+++...+.++..+|
T Consensus 48 ~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 48 SSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34556677777744444444566666655543 35566666666666655544
No 449
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=39.84 E-value=2.2e+02 Score=32.41 Aligned_cols=97 Identities=12% Similarity=0.046 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hc-ccchhhhhccCCCCCcchHHHHHHHHHH
Q 046631 311 VEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NF-VALPVIVLNAVIERDVVSWNTMISAFVQ 388 (813)
Q Consensus 311 ~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~ 388 (813)
++....+.+.+...|+..+...+..++..+ .|++..+..+++.+.. +. ......+...+...+......|+.++.+
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 344444545556666666666665555544 3666666666655544 21 0011111122222333334444544443
Q ss_pred CCCcHHHHHHHHHHHHCCCCCC
Q 046631 389 NGLDDEGLMLVYEMQKQGFMID 410 (813)
Q Consensus 389 ~g~~~~A~~~~~~m~~~g~~pd 410 (813)
++...++.++++|...|+.+.
T Consensus 259 -~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCHH
Confidence 777778888888777776544
No 450
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.82 E-value=1.8e+02 Score=26.53 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=19.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhCcCCChH
Q 046631 656 VADMLGRVGKVVEAYEFVKELGEEGNVL 683 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 683 (813)
.+-.|.+.|.+++|.+++++.-.+++..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d~~~~ 144 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSDPESQ 144 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCCCch
Confidence 4456677778888887777776555554
No 451
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=39.08 E-value=54 Score=19.05 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 697 GHSELAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 697 g~~~~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
|+.+.+..++++++...|.. +..+...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~--~~~W~~y 27 (33)
T smart00386 1 GDIERARKIYERALEKFPKS--VELWLKY 27 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCC--hHHHHHH
Confidence 45667777777777777755 5554443
No 452
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.98 E-value=5.5e+02 Score=27.99 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=42.0
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChH------HHHHHHHHHHHhCCCCc
Q 046631 380 NTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQD------VGKQTHAYLLRHGIHFE 445 (813)
Q Consensus 380 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~ 445 (813)
..++.+ .+.++++.|+.++.+|...|..|....-..+..+.-..|.-+ .+..+++...+.|.+..
T Consensus 248 ~~li~s-i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~ 318 (472)
T PRK14962 248 RDYINA-IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEE 318 (472)
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcch
Confidence 334443 467999999999999999998887765544444444444322 34455555666666555
No 453
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.96 E-value=40 Score=33.75 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=36.2
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHH
Q 046631 627 AGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEV 704 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 704 (813)
.|.++.|++.|...+ .+.|. ...|..-..++.+.++...|++=+... ..+++...-|-.-..+-+..|++++|..
T Consensus 127 ~G~~~~ai~~~t~ai---~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAI---ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred Ccchhhhhccccccc---ccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 344455555444444 22332 333444444444444444444433332 2223332223223333344455555555
Q ss_pred HHHHHhcCCCC
Q 046631 705 VAKKLLEMDTR 715 (813)
Q Consensus 705 ~~~~~~~~~p~ 715 (813)
.+..+.+++-+
T Consensus 204 dl~~a~kld~d 214 (377)
T KOG1308|consen 204 DLALACKLDYD 214 (377)
T ss_pred HHHHHHhcccc
Confidence 55555554443
No 454
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=38.53 E-value=71 Score=20.31 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 720 GYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
..|..||.+-...+++++|.+-+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4578889999999999999988887764
No 455
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.09 E-value=4e+02 Score=26.20 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=25.5
Q ss_pred HHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHH
Q 046631 382 MISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVT 415 (813)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 415 (813)
+.+-.++.+++++|+..+.+....|+..|..+.+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n 42 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN 42 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh
Confidence 3444567788888888888888888877776654
No 456
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.83 E-value=1.7e+02 Score=32.33 Aligned_cols=93 Identities=19% Similarity=0.112 Sum_probs=56.4
Q ss_pred HHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcH------HHHHHHHHHHHCCCC
Q 046631 335 SALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDD------EGLMLVYEMQKQGFM 408 (813)
Q Consensus 335 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~ 408 (813)
+++.+|...|++..+.+++......-.. .+.=...||..|+.+.+.|.++ .|-+++++. .+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~---------~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln 100 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKG---------DKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLN 100 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcC---------CeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcC
Confidence 5666666666666666666655541011 1233457899999999999874 233333333 366
Q ss_pred CCHhHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 046631 409 IDSVTVTALLSAASNLRNQDVGKQTHAYLLR 439 (813)
Q Consensus 409 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 439 (813)
-|..||..++.+....-+-..+.-++..++.
T Consensus 101 ~d~~t~all~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 101 GDSLTYALLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred CcchHHHHHHHhhcChHhHHhccHHHHHHHH
Confidence 7889999888876665444444444444433
No 457
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=37.63 E-value=2.7e+02 Score=30.46 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=31.9
Q ss_pred CCcchH--HHHHHHHhc-CCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHH
Q 046631 68 PTTVIW--NTIIIGFVC-NNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVH 130 (813)
Q Consensus 68 ~~~~~~--~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 130 (813)
+++.+| +.+.+.|=| +|++.+|+..+.......+ +...-....++...+.+.|...+|.-++
T Consensus 208 ~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~-~h~kdi~lLSlaTiL~RaG~sadA~iIL 272 (886)
T KOG4507|consen 208 KNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSS-RHNKDIALLSLATVLHRAGFSADAAVIL 272 (886)
T ss_pred cCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCC-cccccchhhhHHHHHHHcccccchhhee
Confidence 444443 234444444 5677777777766654331 1111233445555666666665555544
No 458
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.28 E-value=3.3e+02 Score=29.98 Aligned_cols=95 Identities=14% Similarity=0.054 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hc-ccchhhhhccCCCCCcchHHHHHHHHHHCCC
Q 046631 314 IELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NF-VALPVIVLNAVIERDVVSWNTMISAFVQNGL 391 (813)
Q Consensus 314 ~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 391 (813)
...+.+.+...|+..+......++... .|+...+..+++.+.. +. ......+...+...+......++.++. .|+
T Consensus 184 ~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d 260 (509)
T PRK14958 184 AAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKA 260 (509)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCC
Confidence 334435555666666655555554443 3666666666655543 21 111111222222333333444444433 366
Q ss_pred cHHHHHHHHHHHHCCCCCCH
Q 046631 392 DDEGLMLVYEMQKQGFMIDS 411 (813)
Q Consensus 392 ~~~A~~~~~~m~~~g~~pd~ 411 (813)
.+.++.++++|.+.|..|..
T Consensus 261 ~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 261 GDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred HHHHHHHHHHHHHcCCCHHH
Confidence 77777777777777765543
No 459
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.11 E-value=41 Score=28.57 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=26.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046631 589 YGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSAC 624 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 624 (813)
....|.-.+|..+|++|++.|-+||. |+.|+.++
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456678899999999999988876 66666554
No 460
>PF15469 Sec5: Exocyst complex component Sec5
Probab=36.99 E-value=3.3e+02 Score=24.89 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=26.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046631 590 GQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQE 643 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 643 (813)
.+......++.++++..- .+..-.-+.-|...|+++.+...|.++...
T Consensus 68 ~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 68 EKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 333344445555554432 112224455667778888877777776654
No 461
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=36.90 E-value=2.5e+02 Score=27.54 Aligned_cols=62 Identities=23% Similarity=0.154 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
....+-..+...++++.|....++.+.++|.+ +.-..--|.+|...|...-|.+-++...+.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~d--p~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPED--PYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCC--hhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34555667778889999999999999999998 666666788899999999999988876543
No 462
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.89 E-value=64 Score=31.89 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVL 621 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 621 (813)
-|+..|..-.+.||+++|+.++++..+.|+.--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 45688888888888888888888888888776666665433
No 463
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=36.81 E-value=26 Score=33.83 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=5.9
Q ss_pred hhHHHHHHHHH
Q 046631 86 PYEAILLYSQM 96 (813)
Q Consensus 86 ~~~a~~~~~~m 96 (813)
+...+++++.|
T Consensus 237 ~PnMldVLKDm 247 (253)
T PF05308_consen 237 VPNMLDVLKDM 247 (253)
T ss_pred CccHHHHHHhh
Confidence 44555555555
No 464
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=35.95 E-value=2.9e+02 Score=27.82 Aligned_cols=136 Identities=14% Similarity=0.032 Sum_probs=76.1
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCc----CCChHH
Q 046631 609 GIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGE----EGNVLE 684 (813)
Q Consensus 609 g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 684 (813)
.+..|...++.+..+ ....+++-.+..+...+..|-.--...+.....-|++.|+.+.|++.+.+.-. -+.-.+
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 355666666666553 23334444444445544323222366777888899999999999998876421 122222
Q ss_pred HHHH---HHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH-hcCCcHHHHHHHHHHH
Q 046631 685 IWGS---LLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA-EEGNWENVDKVRKEMR 746 (813)
Q Consensus 685 ~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 746 (813)
+... ++-.|..+.-..+.++.++.+++.+-+-....-+-..-.+|+ ...++.+|..+|-...
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 3222 333344444456666777777777655322222333333333 4467888888776655
No 465
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=35.60 E-value=8.6e+02 Score=29.31 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=56.7
Q ss_pred HHHHHHHHHhccC--cHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHH-------
Q 046631 616 TFVAVLSACSYAG--LVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIW------- 686 (813)
Q Consensus 616 ~~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------- 686 (813)
.+..++.+|.+.+ ++++|+....++.+. +.+.|.+.++-+..--+.-..|
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~---------------------~~~~ae~alkyl~fLvDvn~Ly~~ALG~Y 872 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE---------------------DPESAEEALKYLCFLVDVNKLYDVALGTY 872 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc---------------------ChHHHHHHHhHheeeccHHHHHHHHhhhc
Confidence 4556777888877 888888888877643 1222222222221111111122
Q ss_pred ---HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 046631 687 ---GSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKE 744 (813)
Q Consensus 687 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (813)
-+++-+-..+.|..+-+-+++++-++.|.- ..+ .+=...|||++|++-+.+
T Consensus 873 Dl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~--rry-----~ID~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 873 DLELALMVAQQSQKDPKEYLPFLQELQKLPPLY--RRY-----KIDDHLKRYEKALRHLSA 926 (928)
T ss_pred CHHHHHHHHHHhccChHHHHHHHHHHHhCChhh--eee-----eHhhhhCCHHHHHHHHHh
Confidence 244555566677777777777777765543 111 122345789998887654
No 466
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.55 E-value=2.7e+02 Score=27.99 Aligned_cols=48 Identities=13% Similarity=-0.034 Sum_probs=31.0
Q ss_pred CcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhc
Q 046631 106 DNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYST 154 (813)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (813)
....+-.++.+++..--.+.+...+++..+.|. .+...|-.=++.+++
T Consensus 298 ~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~-i~l~~yLr~VR~lsR 345 (365)
T KOG2391|consen 298 TAPLYKQILECYALDLAIEDAIYSLGKSLRDGV-IDLDQYLRHVRLLSR 345 (365)
T ss_pred cchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCe-eeHHHHHHHHHHHHH
Confidence 344577788888877777888888888888773 334444444444443
No 467
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=35.50 E-value=4.2e+02 Score=27.81 Aligned_cols=126 Identities=11% Similarity=0.002 Sum_probs=70.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHHHHhcCCC--CChhHHHHHHHH
Q 046631 586 ILGYGQHGMSERALSLFRSMKGCGIEPDAI--TFVAVLSACS--YAGLVDEGLQIFDLMQQEYKIQ--PSTEHYCCVADM 659 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~ 659 (813)
+..+...+++..|.++|+++... +.++.. .+..+..+|. ..-++++|.+.++..... ... -....+..++..
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~-~~~l~~~~~~l~~~~~~ 215 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR-DKALNQEREGLKELVEV 215 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHH
Confidence 33455889999999999999987 566554 4445555553 466788899988877654 111 012333333333
Q ss_pred HhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHH--hCCHHHHHHHHHHHhcCC
Q 046631 660 LGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRL--HGHSELAEVVAKKLLEMD 713 (813)
Q Consensus 660 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~ 713 (813)
......+.........-...+....+...+.++.++ .|+++.|...+-+++++-
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 216 LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 322222222222222211122222244455555553 578888888777777653
No 468
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.41 E-value=1.3e+02 Score=27.84 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=17.7
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046631 577 KNSVTYTTMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 577 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
|+...|..++.++...|+.++|.++.+++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555
No 469
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.08 E-value=6e+02 Score=27.30 Aligned_cols=315 Identities=11% Similarity=-0.009 Sum_probs=0.0
Q ss_pred CCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchhhhhccC-CCCCcchHHHHHH
Q 046631 307 NNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNAV-IERDVVSWNTMIS 384 (813)
Q Consensus 307 ~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~li~ 384 (813)
++.++..++++ +.+...|.....+.++.....+.+.|....-..+-+...- .....+..+...+ ...+.+.+.....
T Consensus 30 ~~~~d~cl~~l-~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aV 108 (696)
T KOG2471|consen 30 NSEFDRCLELL-QELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAV 108 (696)
T ss_pred CcchHHHHHHH-HHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhe
Q ss_pred HHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHH
Q 046631 385 AFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTA 464 (813)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 464 (813)
.|.....+..|+++...+... +.|=...+....... ....|......++|
T Consensus 109 i~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l-----------------------------~~~l~~~t~q~e~a 158 (696)
T KOG2471|consen 109 IFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLL-----------------------------SDLLAAETSQCEEA 158 (696)
T ss_pred eeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHH
Q ss_pred HHHHh----hcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 046631 465 RQIFE----KNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSI 540 (813)
Q Consensus 465 ~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 540 (813)
..++. ......-+...-+.-.....+.+.+..|..-+.- -.|.......-++++....++..+.+-.+...
T Consensus 159 l~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~-----a~~k~~~~~ykVr~llq~~~Lk~~krevK~vm 233 (696)
T KOG2471|consen 159 LDYLNVLAEIEAEKRMKLVGNHIPANNLLKTLSPSAAERSFST-----ADLKLELQLYKVRFLLQTRNLKLAKREVKHVM 233 (696)
T ss_pred HHHHHHHHHHHHhhhccccccccchhhhcccCCcchhcccchh-----hccchhhhHhhHHHHHHHHHHHHHHHhhhhhh
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC------------CHhHHHHHHHHHHhcCChHHHHHHHHHHHh-
Q 046631 541 RYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK------------NSVTYTTMILGYGQHGMSERALSLFRSMKG- 607 (813)
Q Consensus 541 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 607 (813)
...- .+....-.--+.+.-.|++.+|.+++...--. .-..||.|.-.+.+.|.+..+..+|.+...
T Consensus 234 n~a~-~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N 312 (696)
T KOG2471|consen 234 NIAQ-DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRN 312 (696)
T ss_pred hhcC-CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHH
Q ss_pred ------CCCCCCH-----------HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 046631 608 ------CGIEPDA-----------ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLG 661 (813)
Q Consensus 608 ------~g~~p~~-----------~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 661 (813)
.|++|.. .+|+.-+ .+.+.|+.-.|.+.|.+....| ..+++.|..|..+|.
T Consensus 313 ~c~qL~~g~~~~~~~tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 313 SCSQLRNGLKPAKTFTLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHhccCCCCcceehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
No 470
>PHA02875 ankyrin repeat protein; Provisional
Probab=34.87 E-value=5.8e+02 Score=27.07 Aligned_cols=194 Identities=11% Similarity=0.031 Sum_probs=97.8
Q ss_pred ccCCchHHHHHHHHHHHhCCCCChhH--hhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCCCcc--cH
Q 046631 119 ETRNLRIGKAVHCHFIRCFSNPSRFV--YNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVV--AW 194 (813)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~--~~ 194 (813)
..|+.+. .+.+++.|..++... ..+.+...+.. |+.+-+.-+++.-..++.. ..
T Consensus 11 ~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~------------------~~~~~v~~Ll~~ga~~~~~~~~~ 68 (413)
T PHA02875 11 LFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKF------------------RDSEAIKLLMKHGAIPDVKYPDI 68 (413)
T ss_pred HhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHc------------------CCHHHHHHHHhCCCCccccCCCc
Confidence 4455544 444455676665432 23344444555 7777777776654433322 12
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh---hHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHH--HHHH
Q 046631 195 NTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTI---SFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFV--ASSA 269 (813)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~l 269 (813)
.+.+...++.|+.+.+..+++ .|...+.. .-.+.+...+..|+. ++.+.+.+.|.. ++... ....
T Consensus 69 ~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad--~~~~~~~g~tp 138 (413)
T PHA02875 69 ESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGAD--PDIPNTDKFSP 138 (413)
T ss_pred ccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCC--CCCCCCCCCCH
Confidence 234555667788776555543 33222111 011233333445555 455556666755 43321 2334
Q ss_pred HHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhH---HHHHHHhccc
Q 046631 270 IFMYAELGCFDFARKIFDNCLER---NTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTF---LSALSAVSQL 343 (813)
Q Consensus 270 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~ 343 (813)
+...+..|+.+-+..+++..... |...++.|.. .+..|+.+- + +.+-..|..++.... .+.+..++..
T Consensus 139 Lh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~-A~~~g~~ei----v-~~Ll~~ga~~n~~~~~~~~t~l~~A~~~ 212 (413)
T PHA02875 139 LHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLII-AMAKGDIAI----C-KMLLDSGANIDYFGKNGCVAALCYAIEN 212 (413)
T ss_pred HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHH-HHHcCCHHH----H-HHHHhCCCCCCcCCCCCCchHHHHHHHc
Confidence 55666788888888887765443 3333444443 344566443 3 444456766654331 2445544555
Q ss_pred CcchHHH
Q 046631 344 QELDLGQ 350 (813)
Q Consensus 344 ~~~~~a~ 350 (813)
|+.+.+.
T Consensus 213 ~~~~iv~ 219 (413)
T PHA02875 213 NKIDIVR 219 (413)
T ss_pred CCHHHHH
Confidence 6554433
No 471
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=34.70 E-value=6.2e+02 Score=27.35 Aligned_cols=97 Identities=10% Similarity=0.064 Sum_probs=48.9
Q ss_pred HHHhhCCCCCHhHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--hccCcHHHHHHHHHHHHHhcC
Q 046631 569 NVFAKIPEKNSVTY-TTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSAC--SYAGLVDEGLQIFDLMQQEYK 645 (813)
Q Consensus 569 ~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~ 645 (813)
..+..+..++..++ +.++.-+.+.|-+++|...+..+... .+|+...|..++..- ...-+...+..+++.|...||
T Consensus 449 ~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 449 SALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 33444444544433 34555566666677777777776664 344445555555421 112235566666666666666
Q ss_pred CCCChhHHHHHHHHHhccCCHHH
Q 046631 646 IQPSTEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 646 ~~p~~~~~~~l~~~~~~~g~~~~ 668 (813)
.|+..|......=...|..+-
T Consensus 528 --~d~~lw~~y~~~e~~~g~~en 548 (568)
T KOG2396|consen 528 --ADSDLWMDYMKEELPLGRPEN 548 (568)
T ss_pred --CChHHHHHHHHhhccCCCccc
Confidence 344444333333233444333
No 472
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.67 E-value=2.2e+02 Score=31.56 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=14.9
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHh
Q 046631 231 NVFPALSSLGDYKSADVVYGLLVKL 255 (813)
Q Consensus 231 ~ll~~~~~~g~~~~a~~~~~~~~~~ 255 (813)
+++.+|...|++..+.++++.....
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~ 57 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDH 57 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC
Confidence 5566666666666666666555443
No 473
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=34.55 E-value=7.4e+02 Score=28.24 Aligned_cols=203 Identities=12% Similarity=0.156 Sum_probs=108.2
Q ss_pred HHhcCCHHHHHHHHhhCC-CCCHhH----HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 046631 558 YSKSGVINYAANVFAKIP-EKNSVT----YTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDE 632 (813)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~-~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~ 632 (813)
+..-|+.++|..+.+++. .+|+.. .-++..+|+-.|+.....+++.-.... +.-|..-.....-++.-..+.+.
T Consensus 511 L~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhh
Confidence 344466667888888776 334332 223456777777777766666665543 33344444444446666778888
Q ss_pred HHHHHHHHHHhcCCCCChhHHHH--HHHHHhccCCHHHHHHHHHHhCcCCChHHHH-HHHHHHHHHhCCHHHHHHHHHHH
Q 046631 633 GLQIFDLMQQEYKIQPSTEHYCC--VADMLGRVGKVVEAYEFVKELGEEGNVLEIW-GSLLGSCRLHGHSELAEVVAKKL 709 (813)
Q Consensus 633 a~~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~ 709 (813)
...+..-+.+ ...|.++.-.+ |+-+|+-.| ..+|+.+++-|..+|... +. .++ ...|..+.++-
T Consensus 590 ~~s~V~lLse--s~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~D~~~f-VRQgAl---------Ia~amIm~Q~t 656 (929)
T KOG2062|consen 590 LPSTVSLLSE--SYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTSDPVDF-VRQGAL---------IALAMIMIQQT 656 (929)
T ss_pred chHHHHHHhh--hcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhcChHHH-HHHHHH---------HHHHHHHHhcc
Confidence 8887765554 44565544443 344444444 467899999887766444 21 111 12233333433
Q ss_pred hcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHH
Q 046631 710 LEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEML 785 (813)
Q Consensus 710 ~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 785 (813)
-+..|+- ..+.-.+..+- ..+.+++..=|-.....|+-...| ..+.+. +.....|+....+...+
T Consensus 657 ~~~~pkv--~~frk~l~kvI--~dKhEd~~aK~GAilAqGildaGG-rNvtis------lqs~tg~~~~~~vvGl~ 721 (929)
T KOG2062|consen 657 EQLCPKV--NGFRKQLEKVI--NDKHEDGMAKFGAILAQGILDAGG-RNVTIS------LQSMTGHTKLDAVVGLV 721 (929)
T ss_pred cccCchH--HHHHHHHHHHh--hhhhhHHHHHHHHHHHhhhhhcCC-ceEEEE------EeccCCCCchHHHHHHH
Confidence 3444543 22222222221 234566666667777777643333 222221 12234577777665543
No 474
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.18 E-value=20 Score=30.32 Aligned_cols=36 Identities=28% Similarity=0.519 Sum_probs=27.6
Q ss_pred HHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHH
Q 046631 659 MLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCR 694 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 694 (813)
.+...|.-.+|..+|++|...++.++-|+.|+..+.
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPddW~~Ll~~a~ 139 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDDWDALLKEAK 139 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCccHHHHHHHhc
Confidence 344567777888888888888888888888887653
No 475
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.13 E-value=3.8e+02 Score=24.71 Aligned_cols=101 Identities=10% Similarity=0.055 Sum_probs=64.2
Q ss_pred CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccc--hhh
Q 046631 290 LERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVAL--PVI 366 (813)
Q Consensus 290 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~ 366 (813)
.++-.+.|..+...-++.-..+++-+.| +-+ .-.+++-.|-+..++.+++++++.+.+ ..... .-.
T Consensus 103 Kdk~~vPFceFAetV~k~~q~~e~dK~~---LGR--------iGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL 171 (233)
T PF14669_consen 103 KDKPGVPFCEFAETVCKDPQNDEVDKTL---LGR--------IGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGL 171 (233)
T ss_pred cccCCCCHHHHHHHHhcCCccchhhhhh---hhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 4455667777888777777777766655 111 224567778888889999998888876 32211 000
Q ss_pred hhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHH
Q 046631 367 VLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYE 401 (813)
Q Consensus 367 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 401 (813)
.+..-..+--..-|.....|.+.|..+.|+.++++
T Consensus 172 ~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 172 TGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred cCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 11111223334567777888999999999988873
No 476
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=34.10 E-value=2.9e+02 Score=23.43 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHH
Q 046631 633 GLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVK 674 (813)
Q Consensus 633 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 674 (813)
...+|..|.+. +|--. +..|......+...|++.+|.++++
T Consensus 82 p~~if~~L~~~-~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSK-GIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445555444 44443 4445555555555555555555554
No 477
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=33.99 E-value=13 Score=27.38 Aligned_cols=29 Identities=3% Similarity=0.187 Sum_probs=13.7
Q ss_pred CcchHHHHHHHHhcCCChhHHHHHHHHHHh
Q 046631 69 TTVIWNTIIIGFVCNNLPYEAILLYSQMKK 98 (813)
Q Consensus 69 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 98 (813)
++.-|+ ++..+.-.|-+.+..+++.-+.+
T Consensus 61 ~pi~ys-lla~lipkgypgrv~ei~~iliq 89 (92)
T PF02228_consen 61 NPINYS-LLASLIPKGYPGRVNEIINILIQ 89 (92)
T ss_dssp TTT-TT-THHHHS-SS-STTHHHHHHHHHT
T ss_pred ccccHH-HHHHHccCCCCchHHHHHHHHHh
Confidence 444454 44555566655555555555443
No 478
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.89 E-value=2.4e+02 Score=27.69 Aligned_cols=146 Identities=12% Similarity=0.102 Sum_probs=81.1
Q ss_pred HHHHHHHHhCC--------CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHH
Q 046631 599 LSLFRSMKGCG--------IEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAY 670 (813)
Q Consensus 599 ~~~~~~m~~~g--------~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 670 (813)
-.++.-+.+.| ++.|...++.|+.- ...++++--+-+++..+..|-.--..++..+++-|+..++.+.+.
T Consensus 58 aplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~ 135 (412)
T COG5187 58 APLYKYLAEKGNPKTSASVIKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGF 135 (412)
T ss_pred hHHHHHHHhccCCcccchheehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 34666666666 44455556666542 122333333333344433222233778888999999999999999
Q ss_pred HHHHHhC----cCCChHHHHH---HHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH-HHhcCCcHHHHHHH
Q 046631 671 EFVKELG----EEGNVLEIWG---SLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI-YAEEGNWENVDKVR 742 (813)
Q Consensus 671 ~~~~~~~----~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~-~~~~g~~~~A~~~~ 742 (813)
++..+.- ..+--.+++- .|+..|....-.++.++..+.+++.+-+-....-|-..-.+ .....++.+|..++
T Consensus 136 ~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll 215 (412)
T COG5187 136 EWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILL 215 (412)
T ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 8877642 2222222333 23333443444577777888888877653222223333223 33446777887777
Q ss_pred HHHH
Q 046631 743 KEMR 746 (813)
Q Consensus 743 ~~m~ 746 (813)
....
T Consensus 216 ~d~l 219 (412)
T COG5187 216 SDIL 219 (412)
T ss_pred HHHh
Confidence 6665
No 479
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=33.75 E-value=79 Score=31.08 Aligned_cols=61 Identities=15% Similarity=0.046 Sum_probs=50.0
Q ss_pred HhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhH
Q 046631 660 LGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYH 722 (813)
Q Consensus 660 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 722 (813)
..+.|+.++|..+|+.. ...|..+++..-++...-.+++.-+|.++|-+++.+.|.+ ..++
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n--seAL 187 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN--SEAL 187 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc--hHHH
Confidence 45789999999998875 6778888788777777777888999999999999999988 5443
No 480
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=33.56 E-value=5.7e+02 Score=26.59 Aligned_cols=192 Identities=17% Similarity=0.147 Sum_probs=110.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHH--HHHHHhCCCCCCHHHHHHHHHH
Q 046631 546 QNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSL--FRSMKGCGIEPDAITFVAVLSA 623 (813)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~--~~~m~~~g~~p~~~~~~~ll~a 623 (813)
.+..+...+++.|...++|+.--+.. .....++|+...|+.. .+-|.-..-.||..|-..++..
T Consensus 50 s~~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~t 115 (439)
T KOG1498|consen 50 SNTKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIET 115 (439)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Confidence 34455566666666666655433322 1122345666665542 2222222235565655555543
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCC---ChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCCh-------HHHHHHHHHHH
Q 046631 624 CSYAGLVDEGLQIFDLMQQEYKIQP---STEHYCCVADMLGRVGKVVEAYEFVKELGEEGNV-------LEIWGSLLGSC 693 (813)
Q Consensus 624 ~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~~ 693 (813)
+ +...+- .|-. .++.-..|...+..+|+.++|..++.+.+.+-.. ....---+..|
T Consensus 116 L-------------r~Vteg-kIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKO 181 (439)
T KOG1498|consen 116 L-------------RTVTEG-KIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLC 181 (439)
T ss_pred H-------------HHhhcC-ceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHH
Confidence 3 111111 2222 1444556788889999999999998887543211 11122235677
Q ss_pred HHhCCHHHHHHHHHHHhcCCCCCC-----CchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECCEE
Q 046631 694 RLHGHSELAEVVAKKLLEMDTRNS-----MPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYV 765 (813)
Q Consensus 694 ~~~g~~~~a~~~~~~~~~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 765 (813)
...+|+-.|..+.+++....-+.. --.+|.++..+....+.+=++.+.++...+.|..+....-|+.+-..+
T Consensus 182 G~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~i 258 (439)
T KOG1498|consen 182 LLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSI 258 (439)
T ss_pred HHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhh
Confidence 778899988888777654332220 024678888888888999999999999998876554333466554433
No 481
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=33.51 E-value=3.8e+02 Score=27.16 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC-------CCCHhHH--HHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHH-HH
Q 046631 553 SLIDMYSKSGVINYAANVFAKIP-------EKNSVTY--TTMILGYGQHGMSERALSLFRSMKG-----CGIEPDAI-TF 617 (813)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~-~~ 617 (813)
.++...-+.++.++|.+.++++. +|+.+.| ..+...+...|+..++.+++.+..+ .|++|+.. .|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 33444455667777877777765 3444443 3345556677777777777777666 56666544 34
Q ss_pred HHHH
Q 046631 618 VAVL 621 (813)
Q Consensus 618 ~~ll 621 (813)
..+-
T Consensus 160 Y~ls 163 (380)
T KOG2908|consen 160 YSLS 163 (380)
T ss_pred HHHH
Confidence 4443
No 482
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=33.48 E-value=4.1e+02 Score=24.95 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=49.4
Q ss_pred CCcchHHHHHHHHhcCC----ChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhc--cCCchHHHHHHHHHHHhCCCCC
Q 046631 68 PTTVIWNTIIIGFVCNN----LPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAE--TRNLRIGKAVHCHFIRCFSNPS 141 (813)
Q Consensus 68 ~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~ 141 (813)
=++.|...||..+-+.. .+.|-..+|..+.. |..+..-+-+ +|.++. .++.+.+...|...+
T Consensus 91 Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~-----------Wr~vF~~~D~D~SG~I~~-sEL~~Al~~~Gy~Ls 158 (221)
T KOG0037|consen 91 FSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQ-----------WRNVFRTYDRDRSGTIDS-SELRQALTQLGYRLS 158 (221)
T ss_pred CCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH-----------HHHHHHhcccCCCCcccH-HHHHHHHHHcCcCCC
Confidence 35678888888887765 34455555554432 3334444433 344432 456666777899999
Q ss_pred hhHhhHHHHHhhcC
Q 046631 142 RFVYNSLLNMYSTC 155 (813)
Q Consensus 142 ~~~~~~li~~~~~~ 155 (813)
..+++.+++-|.+.
T Consensus 159 pq~~~~lv~kyd~~ 172 (221)
T KOG0037|consen 159 PQFYNLLVRKYDRF 172 (221)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999999866
No 483
>PRK12798 chemotaxis protein; Reviewed
Probab=32.26 E-value=6.2e+02 Score=26.66 Aligned_cols=189 Identities=10% Similarity=0.028 Sum_probs=127.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCcH
Q 046631 554 LIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYG--QHGMSERALSLFRSMKGCGIEPDAITFVAVLSAC-SYAGLV 630 (813)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~-~~~g~~ 630 (813)
.+-.....|+++-...++..-..++.. +.++.+.. -.|+.+++.+.+..+.-.-..+...-+..|+.+- ....+.
T Consensus 87 a~iy~lSGGnP~vlr~L~~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP 164 (421)
T PRK12798 87 ALIYLLSGGNPATLRKLLARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDP 164 (421)
T ss_pred HHhhHhcCCCHHHHHHHHHcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCH
Confidence 333445667777777777665543322 22333322 3689999999999987776777777788888754 456689
Q ss_pred HHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHH----HHHHhCcCCChHHHHHHHHHHHHHhCCHHHH
Q 046631 631 DEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYE----FVKELGEEGNVLEIWGSLLGSCRLHGHSELA 702 (813)
Q Consensus 631 ~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 702 (813)
..|+.+|+...- .-|- ....-.-+-.....|+.+++.. ++.+....+...+.+..+..+..++++-..-
T Consensus 165 ~~Al~~lD~aRL---laPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~ 241 (421)
T PRK12798 165 ATALKLLDQARL---LAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD 241 (421)
T ss_pred HHHHHHHHHHHH---hCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH
Confidence 999999998863 3564 3344455566778899888665 4566677777776777777777777644433
Q ss_pred HHHHHHHh-cCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 703 EVVAKKLL-EMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 703 ~~~~~~~~-~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
.. +..++ .++|.. ....|..++..-.-.|+.+-|...-++.....
T Consensus 242 ~~-l~~~ls~~d~~~-q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 242 AR-LVEILSFMDPER-QRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HH-HHHHHHhcCchh-HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 33 44444 445542 35678888888888999999888888877653
No 484
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.12 E-value=2.4e+02 Score=22.32 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=9.3
Q ss_pred HhccCcHHHHHHHHHHHH
Q 046631 624 CSYAGLVDEGLQIFDLMQ 641 (813)
Q Consensus 624 ~~~~g~~~~a~~~~~~~~ 641 (813)
....|+.++|...+++.+
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 344555555555555544
No 485
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=31.98 E-value=4.8e+02 Score=30.26 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hc-ccchhhhhccCCCCCcchHHHHHHHHHHCC
Q 046631 313 AIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NF-VALPVIVLNAVIERDVVSWNTMISAFVQNG 390 (813)
Q Consensus 313 A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 390 (813)
..+.+.+.....|+..+...+..+.+.+ .|++..+..++.+... +. ..+...+...+...+......++..+ ..+
T Consensus 183 Iv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL-~~~ 259 (830)
T PRK07003 183 IVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL-AAG 259 (830)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-HcC
Confidence 3334434444445554444444443332 3555555555554443 11 11111222222334444455555543 448
Q ss_pred CcHHHHHHHHHHHHCCCCCC
Q 046631 391 LDDEGLMLVYEMQKQGFMID 410 (813)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~pd 410 (813)
+..+++.+++++...|+.+.
T Consensus 260 d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 260 DGPEILAVADEMALRSLSFS 279 (830)
T ss_pred CHHHHHHHHHHHHHhCCCHH
Confidence 88888888888888876543
No 486
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.85 E-value=1.5e+02 Score=28.87 Aligned_cols=15 Identities=20% Similarity=0.069 Sum_probs=6.1
Q ss_pred HHHHHHhCCHHHHHH
Q 046631 690 LGSCRLHGHSELAEV 704 (813)
Q Consensus 690 ~~~~~~~g~~~~a~~ 704 (813)
..++...|+.+....
T Consensus 225 ~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 225 LECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHhCCHHHHHH
Confidence 333344444444333
No 487
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=31.77 E-value=87 Score=29.53 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=50.6
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCc
Q 046631 693 CRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLR 751 (813)
Q Consensus 693 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 751 (813)
..+.+|.+.+.+.+.+++++-|+. ...+.-++..-.+.|+.+.|...+++..+....
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w--~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEW--AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchh--hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 346788999999999999999998 888899999999999999999999999877643
No 488
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.63 E-value=5.2e+02 Score=25.55 Aligned_cols=100 Identities=9% Similarity=0.014 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHh---cCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHhCcCCChH---HHH
Q 046631 614 AITFVAVLSACSYAGLVDEGLQIFDLMQQE---YKIQPST-EHYCCVADMLGRVGKVVEAYEFVKELGEEGNVL---EIW 686 (813)
Q Consensus 614 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ 686 (813)
...+..+..-|++.++.+.+.+..++..++ .|.+-|+ .+-..|+..|....-.++-++..+.+-+.+..= +-|
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 347888888999999999999888776544 2444452 233345556666666777777777775554221 112
Q ss_pred HHH-HHHHHHhCCHHHHHHHHHHHhcCC
Q 046631 687 GSL-LGSCRLHGHSELAEVVAKKLLEMD 713 (813)
Q Consensus 687 ~~l-~~~~~~~g~~~~a~~~~~~~~~~~ 713 (813)
... +-.+....++.+|-.++-..+.-.
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 221 122333456777777766665443
No 489
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=30.94 E-value=3.2e+02 Score=28.96 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc---CC
Q 046631 589 YGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRV---GK 665 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~ 665 (813)
+...|++++|+..|+.++ +...+.........+++.+++....+- +....+..-.|. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL----------~~i~l~vv~~~~E~~e~~eli~icrEY--------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSIL----------HSIPLLVVESREEEDEAKELIEICREY--------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHH----------HHHHC--BSSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeecCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccccc
Q ss_pred HHHHHHHHHHh------CcCC-ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 666 VVEAYEFVKEL------GEEG-NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 666 ~~~A~~~~~~~------~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.++..+-++-+ ..+| ....++..-+..+.+++++.-|..+.++++++.|..
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
No 490
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.52 E-value=5e+02 Score=25.07 Aligned_cols=160 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-ccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-
Q 046631 484 MIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPAC-NPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKS- 561 (813)
Q Consensus 484 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 561 (813)
++..+-+.++++++...++++...+...+..--+.+-.+| ...|....+.+++..+....-.-.......++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred -----CCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCCh-----------------HHHHHHHHHHHhC---CCCCCHHH
Q 046631 562 -----GVINYAANVFAKIPEKNSVTYTTMILGYGQHGMS-----------------ERALSLFRSMKGC---GIEPDAIT 616 (813)
Q Consensus 562 -----g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-----------------~~A~~~~~~m~~~---g~~p~~~~ 616 (813)
.--.+...+++...-|...+-.+.+-.+-..|++ +.|.+.|++..+. .++|...+
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred HHHHHHHHh-----ccCcHHHHHHHHHHHHHh
Q 046631 617 FVAVLSACS-----YAGLVDEGLQIFDLMQQE 643 (813)
Q Consensus 617 ~~~ll~a~~-----~~g~~~~a~~~~~~~~~~ 643 (813)
+..|+--++ ..|+.++|.++.+.....
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
No 491
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=30.33 E-value=3.4e+02 Score=25.76 Aligned_cols=91 Identities=22% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHH
Q 046631 582 YTTMILGYGQHGMSERALSLFRSMKGCGIEP-----DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCV 656 (813)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 656 (813)
+|.|+--|..+..+.+|-+.|..-.. +.| +...=..-|......|++++|++....+... -+.-|...+-.|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~e~~--i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAKESG--IKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhccccC--CCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHH
Q ss_pred HHH----HhccCCHHHHHHHHHH
Q 046631 657 ADM----LGRVGKVVEAYEFVKE 675 (813)
Q Consensus 657 ~~~----~~~~g~~~~A~~~~~~ 675 (813)
... +.|.|..++|+++.+.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
No 492
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.94 E-value=3.9e+02 Score=30.21 Aligned_cols=100 Identities=16% Similarity=0.073 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH--hcccchhhhhccCCCCCcchHHHHHHHHHH
Q 046631 311 VEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK--NFVALPVIVLNAVIERDVVSWNTMISAFVQ 388 (813)
Q Consensus 311 ~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 388 (813)
++..+.+.+.+...|+..+......++..+. |++..+..+++++.. +.......+...+...+......++.++..
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~s~--GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~ 263 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARAAR--GSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ 263 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc
Q ss_pred CCCcHHHHHHHHHHHHCCCCCCHhH
Q 046631 389 NGLDDEGLMLVYEMQKQGFMIDSVT 413 (813)
Q Consensus 389 ~g~~~~A~~~~~~m~~~g~~pd~~t 413 (813)
|+...++.++++|.+.|..+....
T Consensus 264 -~d~~~al~~l~~l~~~G~~~~~il 287 (618)
T PRK14951 264 -GDGRTVVETADELRLNGLSAASTL 287 (618)
T ss_pred -CCHHHHHHHHHHHHHcCCCHHHHH
No 493
>PRK13342 recombination factor protein RarA; Reviewed
Probab=29.79 E-value=7.1e+02 Score=26.54 Aligned_cols=165 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHC---CC-CCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHHH
Q 046631 393 DEGLMLVYEMQKQ---GF-MIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQI 467 (813)
Q Consensus 393 ~~A~~~~~~m~~~---g~-~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 467 (813)
++...++...... |+ ..+......++..+ .|+...+..+++.+...+...+ .....++.......
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~-------- 223 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARY-------- 223 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhcc--------
Q ss_pred HhhcCCCCCChhhHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC-----ChHHHHHHHHHH
Q 046631 468 FEKNDSGDRDQATWNAMIAGYTQ---NGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMG-----NIELGKQLHGFS 539 (813)
Q Consensus 468 ~~~~~~~~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~ 539 (813)
..+...+..++.++.+ .++.+.|+.++..|.+.|..|....-..+..++...| ....+...++..
T Consensus 224 -------d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~ 296 (413)
T PRK13342 224 -------DKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAV 296 (413)
T ss_pred -------CCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHH
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 046631 540 IRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKI 574 (813)
Q Consensus 540 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (813)
..-|++-........+-.++.+-+-..+...++..
T Consensus 297 ~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a 331 (413)
T PRK13342 297 ERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAA 331 (413)
T ss_pred HHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHH
No 494
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=28.38 E-value=1e+03 Score=28.06 Aligned_cols=184 Identities=10% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCC-ChhhHHHHHHHH-----HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHH
Q 046631 462 KTARQIFEKNDSGDR-DQATWNAMIAGY-----TQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQL 535 (813)
Q Consensus 462 ~~A~~~~~~~~~~~~-~~~~~~~li~~~-----~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 535 (813)
+++.++|+.+....| -...+...+..+ ......++..++++..-.---..|...+...+.. +..-...|..+
T Consensus 1092 e~~~k~~~~l~s~ypd~lpll~~~l~kl~~~sD~~kE~~~ki~eIl~~A~~Vi~~~D~eaL~~y~~~--k~D~r~da~kl 1169 (1304)
T KOG1114|consen 1092 EEAEKIYNYLKSSYPDYLPLLEVRLAKLMQKSDAVKETNKKIEEILSAADSVIQEIDTEALARYYAL--KEDTRPDAVKL 1169 (1304)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhc--ccCCcchHHHH
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 046631 536 HGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI 615 (813)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 615 (813)
-..|.+. -+++|+++++.|..-.-.+.++.-.+.|.. -.....+.-.+.|.++.+-=-..|..
T Consensus 1170 k~~me~q--------k~tli~AL~kKg~a~ak~e~l~g~~e~dae---------ee~s~ld~~~e~y~el~kw~d~~dsK 1232 (1304)
T KOG1114|consen 1170 KKKMEKQ--------KDTLIDALVKKGEAFAKYEALKGHKEQDAE---------EELSKLDSYNENYQELLKWLDASDSK 1232 (1304)
T ss_pred HHHHHHH--------HHHHHHHHHHhhhHHhhhhhhcccccccch---------hhhhhhhhHHHHHHHHHHHhhcCCch
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccC
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVG 664 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 664 (813)
++..-..-+...|++..+.+++.++.++.|-.++...+..+++++...|
T Consensus 1233 ~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1233 VWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred heehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
No 495
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.30 E-value=5.5e+02 Score=24.79 Aligned_cols=107 Identities=14% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHH
Q 046631 589 YGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 668 (813)
+.+.|++.+|..-|++.+- .|=..-.+..-.+.-..-++.+..- .+..+..++...|++-+
T Consensus 188 lfk~~~ykEA~~~YreAi~-----------~l~~L~lkEkP~e~eW~eLdk~~tp--------LllNy~QC~L~~~e~ye 248 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAII-----------CLRNLQLKEKPGEPEWLELDKMITP--------LLLNYCQCLLKKEEYYE 248 (329)
T ss_pred hhhhccHHHHHHHHHHHHH-----------HHHHHHhccCCCChHHHHHHHhhhH--------HHHhHHHHHhhHHHHHH
Q ss_pred HHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 046631 669 AYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 669 A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 714 (813)
+++.-.++ ...|.+..+|..-..+....-+.++|..-+.++++++|
T Consensus 249 vleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 249 VLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
No 496
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=27.93 E-value=5.3e+02 Score=24.44 Aligned_cols=90 Identities=12% Similarity=0.061 Sum_probs=0.0
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCCHHHHHHHHHHh--------------CcCCChHH
Q 046631 624 CSYAGLVDEGLQIFDLMQQEYKIQPS-----TEHYCCVADMLGRVGKVVEAYEFVKEL--------------GEEGNVLE 684 (813)
Q Consensus 624 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~~~~~~~~ 684 (813)
+.....+++|++.+..+.-...+... ...+..+.-+|...|+-+....+++++ ...-+...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMD 713 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 713 (813)
+...++...++.|+.++|.+.+.+++...
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
No 497
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.82 E-value=3.3e+02 Score=26.53 Aligned_cols=80 Identities=18% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh----CcCC---ChHHHHHHHHHHHHHhCCHHHH
Q 046631 630 VDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL----GEEG---NVLEIWGSLLGSCRLHGHSELA 702 (813)
Q Consensus 630 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~---~~~~~~~~l~~~~~~~g~~~~a 702 (813)
+..|...|.... ...-.......++.-|.+.|++++|.++++.+ ..++ -...+...+..++...|+.+..
T Consensus 161 L~~A~~~f~~~~---~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~ 237 (247)
T PF11817_consen 161 LEKAYEQFKKYG---QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDY 237 (247)
T ss_pred HHHHHHHHHHhc---cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHH
Q ss_pred HHHHHHHhcC
Q 046631 703 EVVAKKLLEM 712 (813)
Q Consensus 703 ~~~~~~~~~~ 712 (813)
..+.-+++..
T Consensus 238 l~~~leLls~ 247 (247)
T PF11817_consen 238 LTTSLELLSR 247 (247)
T ss_pred HHHHHHHhcC
No 498
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=27.81 E-value=7.6e+02 Score=26.27 Aligned_cols=161 Identities=17% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHH----------------------------------------
Q 046631 449 SYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGY---------------------------------------- 488 (813)
Q Consensus 449 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~---------------------------------------- 488 (813)
+.+.--+...|.++.|.+++++-.+..--...-..++..|
T Consensus 122 S~laadhvAAGsFetAm~LLnrQiGivnF~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l 201 (422)
T PF06957_consen 122 SSLAADHVAAGSFETAMQLLNRQIGIVNFEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPAIPLSL 201 (422)
T ss_dssp --SHHHHHHCT-HHHHHHHHHHHC-B---GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB----H
T ss_pred CCcHHHHHHhCCHHHHHHHHHHHhCccccHHHHHHHHHHHHhhceecccCCCCCCccccccCCccccccccCCCcCcCCH
Q ss_pred -------------HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHH-----------HcCC
Q 046631 489 -------------TQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSI-----------RYLL 544 (813)
Q Consensus 489 -------------~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-----------~~~~ 544 (813)
...|++.+|+..|+.++ +.+.+.......+.+++.++..... +..+
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL----------~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l 271 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSIL----------HSIPLLVVESREEEDEAKELIEICREYILGLSIELERREL 271 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH----------HHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------HHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred CCchh---HHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHH
Q 046631 545 DQNVF---VGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI-TFVAV 620 (813)
Q Consensus 545 ~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l 620 (813)
..+.. --+.=+.+|.-.=++.-...++ +...-+..+.+.+++..|-.+-+++++.+..|+.. --..+
T Consensus 272 ~~~~~~~~kR~lELAAYFThc~LQp~H~~L---------aLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKi 342 (422)
T PF06957_consen 272 PKDPVEDQKRNLELAAYFTHCKLQPSHLIL---------ALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKI 342 (422)
T ss_dssp -TTTHHHHHHHHHHHHHHCCS---HHHHHH---------HHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhcCCCcHHHHHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q ss_pred HHHHhccC
Q 046631 621 LSACSYAG 628 (813)
Q Consensus 621 l~a~~~~g 628 (813)
+.+|-+..
T Consensus 343 l~~~e~~~ 350 (422)
T PF06957_consen 343 LQACERNP 350 (422)
T ss_dssp HHHHCCS-
T ss_pred HHHHhcCC
No 499
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=27.38 E-value=4.9e+02 Score=28.62 Aligned_cols=98 Identities=6% Similarity=0.013 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hc----ccchhhhhccCCCCCcchHHHHH
Q 046631 309 HPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NF----VALPVIVLNAVIERDVVSWNTMI 383 (813)
Q Consensus 309 ~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~li 383 (813)
..++....+.+.+...|+..+......+...+. |++..+...++.+.. .. ......+...+...+....-.|+
T Consensus 188 s~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~--GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~ 265 (507)
T PRK06645 188 SFEEIFKLLEYITKQENLKTDIEALRIIAYKSE--GSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFV 265 (507)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHH
Q ss_pred HHHHHCCCcHHHHHHHHHHHHCCCCC
Q 046631 384 SAFVQNGLDDEGLMLVYEMQKQGFMI 409 (813)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m~~~g~~p 409 (813)
.+..+ |+..+|+.+++++...|..|
T Consensus 266 ~ai~~-~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 266 EYIIH-RETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHHc-CCHHHHHHHHHHHHHcCCCH
No 500
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=27.25 E-value=6.6e+02 Score=25.34 Aligned_cols=149 Identities=10% Similarity=-0.038 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHH-hcccchhhhhccCCCCCcchHHHHHHHHH
Q 046631 309 HPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIK-NFVALPVIVLNAVIERDVVSWNTMISAFV 387 (813)
Q Consensus 309 ~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 387 (813)
..++....+...+...|+..+......++..+. |++..+...++.+.. +-......+..............++.+..
T Consensus 162 ~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~--gd~r~~~~~l~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~~~ 239 (319)
T PRK00440 162 KKEAVAERLRYIAENEGIEITDDALEAIYYVSE--GDMRKAINALQAAAATGKEVTEEAVYKITGTARPEEIREMIELAL 239 (319)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCHHHHHHHHHHHH
Q ss_pred HCCCcHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHH------HHhCCCCcchHHHHHHHHHhcCC
Q 046631 388 QNGLDDEGLMLVYEMQK-QGFMIDSVTVTALLSAASNLRNQDVGKQTHAYL------LRHGIHFEGMESYLIDMYAKSGL 460 (813)
Q Consensus 388 ~~g~~~~A~~~~~~m~~-~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~ 460 (813)
+ +++.+|..+++++.. .|..|....-......+.+.-+.+.-.+++..+ .+.|..+......++.-++.-|.
T Consensus 240 ~-~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~d~~~k~g~~~~~~le~~i~~~~~~~~ 318 (319)
T PRK00440 240 N-GDFTEAREKLRDLMIDYGLSGEDIIKQIHREVWSLDIPEELKVELIDAIGEADFRITEGANERIQLEALLAKLALLGK 318 (319)
T ss_pred c-CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcc
Done!