Query 046631
Match_columns 813
No_of_seqs 708 out of 4362
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 04:19:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.9E-40 1.3E-44 372.8 42.2 500 50-730 63-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.8E-39 1.3E-43 364.7 38.4 496 174-748 67-579 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8E-25 2.7E-29 232.5 42.9 375 301-734 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.7E-25 2E-29 233.6 41.5 354 382-747 5-367 (388)
5 4g26_A Pentatricopeptide repea 99.9 9.6E-27 3.3E-31 250.4 22.4 185 478-663 26-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 1E-25 3.4E-30 242.5 23.5 196 296-561 28-223 (501)
7 2y4t_A DNAJ homolog subfamily 99.9 2.9E-21 9.8E-26 209.7 35.7 340 373-744 23-405 (450)
8 2gw1_A Mitochondrial precursor 99.9 1.3E-21 4.3E-26 216.5 32.5 364 376-749 6-479 (514)
9 2gw1_A Mitochondrial precursor 99.9 2.8E-21 9.7E-26 213.7 33.4 262 458-725 202-489 (514)
10 3fp2_A TPR repeat-containing p 99.9 1.6E-19 5.6E-24 200.7 37.9 218 522-747 252-490 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 6.6E-20 2.3E-24 198.9 32.4 308 410-748 25-358 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.2E-19 4.2E-24 201.7 35.3 450 191-723 25-500 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 5.7E-16 1.9E-20 175.6 57.9 317 380-741 1053-1377(1630)
14 1xi4_A Clathrin heavy chain; a 99.8 2.3E-15 7.8E-20 170.8 56.4 644 44-743 486-1340(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 1.4E-17 4.7E-22 174.4 36.1 327 376-794 3-355 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 1.1E-17 3.8E-22 175.1 33.5 280 373-730 34-351 (359)
17 3hym_B Cell division cycle pro 99.8 4.1E-17 1.4E-21 168.6 31.2 284 414-736 25-322 (330)
18 3hym_B Cell division cycle pro 99.8 1.3E-16 4.6E-21 164.7 27.3 264 476-747 20-298 (330)
19 3mkr_A Coatomer subunit epsilo 99.8 1.9E-16 6.6E-21 159.0 26.9 271 455-742 9-288 (291)
20 2xm6_A Protein corresponding t 99.8 9.6E-15 3.3E-19 159.5 41.6 266 449-731 151-452 (490)
21 1b89_A Protein (clathrin heavy 99.7 1.4E-16 4.7E-21 162.5 23.9 280 174-500 17-304 (449)
22 1b89_A Protein (clathrin heavy 99.7 5E-17 1.7E-21 165.7 20.7 409 53-534 17-425 (449)
23 2xm6_A Protein corresponding t 99.7 2.5E-14 8.5E-19 156.3 43.1 353 374-750 37-434 (490)
24 1fch_A Peroxisomal targeting s 99.7 2E-16 6.9E-21 166.2 24.7 284 455-745 35-356 (368)
25 2ooe_A Cleavage stimulation fa 99.7 1.9E-14 6.5E-19 158.9 38.8 211 531-749 256-493 (530)
26 2ooe_A Cleavage stimulation fa 99.7 4.3E-14 1.5E-18 156.1 41.2 336 374-716 77-496 (530)
27 4eqf_A PEX5-related protein; a 99.7 2.1E-16 7.3E-21 165.8 20.2 263 477-744 64-352 (365)
28 4g1t_A Interferon-induced prot 99.7 1.9E-15 6.7E-20 164.7 28.3 368 374-759 49-470 (472)
29 1fch_A Peroxisomal targeting s 99.7 8.7E-16 3E-20 161.3 21.3 301 385-710 34-357 (368)
30 3mkr_A Coatomer subunit epsilo 99.7 5.4E-15 1.9E-19 148.4 24.9 248 485-749 6-265 (291)
31 3cv0_A Peroxisome targeting si 99.7 1.6E-15 5.6E-20 156.3 21.1 256 449-746 25-313 (327)
32 4eqf_A PEX5-related protein; a 99.7 3.9E-15 1.3E-19 156.1 22.3 233 512-749 64-311 (365)
33 4g1t_A Interferon-induced prot 99.6 9.9E-14 3.4E-18 151.1 30.7 378 294-726 51-471 (472)
34 3cv0_A Peroxisome targeting si 99.6 5E-14 1.7E-18 145.0 23.8 277 375-714 20-317 (327)
35 3spa_A Mtrpol, DNA-directed RN 99.6 3.3E-16 1.1E-20 172.2 7.0 150 478-664 127-286 (1134)
36 2pl2_A Hypothetical conserved 99.6 2.6E-14 9E-19 136.8 19.4 194 545-746 2-212 (217)
37 3uq3_A Heat shock protein STI1 99.6 4.9E-14 1.7E-18 139.4 21.6 219 479-748 6-236 (258)
38 3spa_A Mtrpol, DNA-directed RN 99.6 7.3E-16 2.5E-20 169.5 9.0 125 547-672 126-258 (1134)
39 3uq3_A Heat shock protein STI1 99.6 2E-13 6.9E-18 135.0 21.9 236 446-726 6-254 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 6.4E-13 2.2E-17 132.8 21.9 240 492-742 19-269 (275)
41 2ho1_A Type 4 fimbrial biogene 99.5 9E-13 3.1E-17 129.8 22.4 198 548-749 37-239 (252)
42 3u4t_A TPR repeat-containing p 99.5 5.8E-13 2E-17 132.9 21.2 244 449-732 7-268 (272)
43 2h6f_A Protein farnesyltransfe 99.5 1.2E-12 4.2E-17 135.7 23.4 244 478-730 97-364 (382)
44 1ouv_A Conserved hypothetical 99.5 1E-11 3.5E-16 123.8 28.1 224 477-750 5-253 (273)
45 2vq2_A PILW, putative fimbrial 99.5 2.5E-12 8.4E-17 124.0 22.5 198 547-748 7-211 (225)
46 1ouv_A Conserved hypothetical 99.5 1.3E-11 4.3E-16 123.2 26.5 224 446-716 7-255 (273)
47 2h6f_A Protein farnesyltransfe 99.5 3.7E-12 1.3E-16 132.1 22.9 224 514-746 98-346 (382)
48 2q7f_A YRRB protein; TPR, prot 99.5 1E-12 3.4E-17 128.6 17.7 196 547-748 22-222 (243)
49 3vtx_A MAMA; tetratricopeptide 99.5 3.8E-12 1.3E-16 118.3 20.4 165 578-749 4-171 (184)
50 3u4t_A TPR repeat-containing p 99.5 1.1E-11 3.8E-16 123.6 24.3 245 412-694 4-266 (272)
51 3e4b_A ALGK; tetratricopeptide 99.5 4E-12 1.4E-16 136.4 22.3 344 382-750 9-389 (452)
52 2ho1_A Type 4 fimbrial biogene 99.4 1.6E-11 5.5E-16 120.8 24.5 205 478-723 37-247 (252)
53 2pl2_A Hypothetical conserved 99.4 9.1E-12 3.1E-16 119.0 20.6 109 562-675 98-210 (217)
54 3e4b_A ALGK; tetratricopeptide 99.4 4.7E-11 1.6E-15 128.0 28.2 311 417-750 9-353 (452)
55 2q7f_A YRRB protein; TPR, prot 99.4 2.9E-12 1E-16 125.3 17.3 211 477-729 22-237 (243)
56 4a1s_A PINS, partner of inscut 99.4 2.3E-12 7.7E-17 137.5 17.9 262 485-748 55-372 (411)
57 4abn_A Tetratricopeptide repea 99.4 2.9E-12 9.9E-17 138.4 17.9 191 547-744 101-317 (474)
58 2vq2_A PILW, putative fimbrial 99.4 2.7E-11 9.1E-16 116.7 23.0 208 477-725 7-222 (225)
59 3sf4_A G-protein-signaling mod 99.4 4.8E-12 1.6E-16 134.6 18.8 95 447-541 11-115 (406)
60 4e6h_A MRNA 3'-END-processing 99.4 1.6E-09 5.4E-14 119.9 38.6 231 480-716 304-574 (679)
61 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.2E-11 4.1E-16 123.5 19.9 242 388-637 17-269 (275)
62 3ro2_A PINS homolog, G-protein 99.4 6.7E-12 2.3E-16 129.5 18.5 200 549-748 84-332 (338)
63 3sf4_A G-protein-signaling mod 99.4 1.6E-12 5.6E-17 138.3 14.0 298 408-736 6-364 (406)
64 4gyw_A UDP-N-acetylglucosamine 99.4 4.6E-12 1.6E-16 142.0 17.9 164 578-748 8-174 (723)
65 3vtx_A MAMA; tetratricopeptide 99.4 1.6E-11 5.6E-16 114.0 18.2 166 547-716 4-174 (184)
66 4a1s_A PINS, partner of inscut 99.4 5.3E-12 1.8E-16 134.6 15.6 272 413-715 50-375 (411)
67 3ulq_A Response regulator aspa 99.4 1.8E-11 6.1E-16 129.0 19.1 129 616-747 226-367 (383)
68 3ro2_A PINS homolog, G-protein 99.3 1.7E-11 5.6E-16 126.5 17.6 166 550-715 125-335 (338)
69 4i17_A Hypothetical protein; T 99.3 2.8E-11 9.7E-16 116.9 17.7 188 547-748 6-209 (228)
70 4e6h_A MRNA 3'-END-processing 99.3 1.1E-08 3.8E-13 113.2 38.2 147 208-358 49-222 (679)
71 2ond_A Cleavage stimulation fa 99.3 6.5E-10 2.2E-14 112.7 26.2 217 495-716 33-274 (308)
72 4abn_A Tetratricopeptide repea 99.3 4.6E-11 1.6E-15 128.9 18.7 179 564-749 84-288 (474)
73 3nf1_A KLC 1, kinesin light ch 99.3 4.5E-11 1.5E-15 121.7 16.9 234 513-748 27-307 (311)
74 3ulq_A Response regulator aspa 99.3 6.2E-11 2.1E-15 124.8 17.7 295 421-715 22-371 (383)
75 3as5_A MAMA; tetratricopeptide 99.3 2E-10 6.9E-15 106.6 18.3 162 581-748 10-173 (186)
76 3nf1_A KLC 1, kinesin light ch 99.3 8E-12 2.8E-16 127.3 9.0 238 478-715 27-310 (311)
77 4i17_A Hypothetical protein; T 99.3 5.1E-10 1.7E-14 108.0 21.0 205 511-729 5-224 (228)
78 2ond_A Cleavage stimulation fa 99.2 5E-10 1.7E-14 113.6 21.7 213 530-750 33-272 (308)
79 3q15_A PSP28, response regulat 99.2 1.3E-09 4.5E-14 114.3 24.5 30 375-404 9-40 (378)
80 3as5_A MAMA; tetratricopeptide 99.2 7.6E-10 2.6E-14 102.6 18.5 164 549-716 9-177 (186)
81 1hz4_A MALT regulatory protein 99.2 1.1E-08 3.6E-13 107.2 27.9 198 551-748 96-322 (373)
82 3q15_A PSP28, response regulat 99.2 1.4E-09 4.9E-14 114.0 21.1 221 524-747 112-364 (378)
83 4gyw_A UDP-N-acetylglucosamine 99.2 1.7E-10 5.9E-15 129.3 13.8 163 547-714 8-176 (723)
84 3qky_A Outer membrane assembly 99.1 2E-09 6.8E-14 106.3 19.4 86 686-794 151-247 (261)
85 3edt_B KLC 2, kinesin light ch 99.1 1.6E-09 5.5E-14 108.3 16.8 222 524-747 12-280 (283)
86 4ga2_A E3 SUMO-protein ligase 99.1 1.6E-10 5.5E-15 102.7 7.4 142 586-734 4-149 (150)
87 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.4E-08 4.8E-13 97.4 20.1 179 549-750 5-215 (225)
88 1hz4_A MALT regulatory protein 99.0 6.7E-08 2.3E-12 101.1 26.7 266 380-676 18-319 (373)
89 3mv2_B Coatomer subunit epsilo 99.0 3.5E-08 1.2E-12 96.5 22.5 242 455-721 23-289 (310)
90 3qky_A Outer membrane assembly 99.0 8.8E-09 3E-13 101.6 18.7 167 547-716 14-228 (261)
91 4ga2_A E3 SUMO-protein ligase 99.0 7.9E-10 2.7E-14 98.2 9.6 123 620-747 3-128 (150)
92 1qqe_A Vesicular transport pro 99.0 6.7E-09 2.3E-13 104.2 16.9 202 528-746 32-267 (292)
93 2pzi_A Probable serine/threoni 99.0 4.8E-09 1.6E-13 118.5 16.6 168 524-697 402-582 (681)
94 1qqe_A Vesicular transport pro 99.0 1.6E-08 5.4E-13 101.5 17.9 163 549-716 78-273 (292)
95 3edt_B KLC 2, kinesin light ch 99.0 3.1E-09 1.1E-13 106.1 12.2 225 489-713 12-282 (283)
96 4gco_A Protein STI-1; structur 98.9 5.5E-09 1.9E-13 89.3 11.7 101 645-747 7-109 (126)
97 2fo7_A Synthetic consensus TPR 98.9 1.8E-08 6E-13 87.4 15.2 126 618-748 5-132 (136)
98 3rjv_A Putative SEL1 repeat pr 98.9 8.6E-08 2.9E-12 90.8 20.6 173 567-750 5-199 (212)
99 3qou_A Protein YBBN; thioredox 98.9 1.2E-08 4E-13 102.0 14.9 177 565-746 103-282 (287)
100 2fo7_A Synthetic consensus TPR 98.9 4.6E-08 1.6E-12 84.7 16.3 131 581-715 3-135 (136)
101 2r5s_A Uncharacterized protein 98.9 7.5E-09 2.6E-13 94.9 11.7 158 551-746 9-171 (176)
102 3urz_A Uncharacterized protein 98.9 2.1E-08 7.3E-13 94.7 14.7 122 620-747 60-185 (208)
103 3gyz_A Chaperone protein IPGC; 98.9 7.9E-09 2.7E-13 91.1 10.7 102 645-748 30-133 (151)
104 3mv2_B Coatomer subunit epsilo 98.9 2E-07 7E-12 91.1 21.6 240 486-749 21-283 (310)
105 3urz_A Uncharacterized protein 98.9 4.8E-08 1.7E-12 92.2 16.5 157 555-716 11-190 (208)
106 2vsy_A XCC0866; transferase, g 98.9 2.3E-08 7.8E-13 111.1 16.2 159 561-726 2-169 (568)
107 2vgx_A Chaperone SYCD; alterna 98.9 7.7E-09 2.6E-13 91.4 9.9 102 645-748 15-118 (148)
108 3dra_A Protein farnesyltransfe 98.8 4.8E-07 1.6E-11 89.6 22.6 191 551-747 70-286 (306)
109 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.1E-07 3.7E-12 91.1 16.6 183 513-716 4-217 (225)
110 4gco_A Protein STI-1; structur 98.8 5E-08 1.7E-12 83.3 12.4 114 610-728 8-124 (126)
111 2vsy_A XCC0866; transferase, g 98.8 9.3E-08 3.2E-12 106.2 17.7 157 526-687 2-166 (568)
112 2ifu_A Gamma-SNAP; membrane fu 98.8 1.3E-07 4.5E-12 95.5 17.3 221 492-740 5-253 (307)
113 2pzi_A Probable serine/threoni 98.8 1.4E-07 4.8E-12 106.5 18.8 168 559-734 402-583 (681)
114 3u3w_A Transcriptional activat 98.7 8.8E-07 3E-11 88.8 21.8 166 582-747 78-265 (293)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.2E-07 7.4E-12 88.2 16.3 129 580-715 7-153 (213)
116 2ifu_A Gamma-SNAP; membrane fu 98.7 9.8E-08 3.4E-12 96.5 14.6 199 526-746 4-222 (307)
117 2xcb_A PCRH, regulatory protei 98.7 8.7E-08 3E-12 84.1 12.4 102 645-748 12-115 (142)
118 2r5s_A Uncharacterized protein 98.7 1.5E-07 5.3E-12 86.0 13.9 154 516-675 9-169 (176)
119 2qfc_A PLCR protein; TPR, HTH, 98.7 4.8E-07 1.7E-11 90.7 18.3 168 580-747 76-265 (293)
120 3qou_A Protein YBBN; thioredox 98.7 1.8E-07 6.3E-12 93.2 15.0 159 547-710 116-282 (287)
121 3rjv_A Putative SEL1 repeat pr 98.7 6.7E-07 2.3E-11 84.5 18.0 174 532-715 5-200 (212)
122 2uy1_A Cleavage stimulation fa 98.7 3.5E-05 1.2E-09 82.8 33.1 124 580-711 287-412 (493)
123 3upv_A Heat shock protein STI1 98.6 2.2E-07 7.7E-12 79.4 11.8 97 650-748 4-101 (126)
124 1a17_A Serine/threonine protei 98.6 4.7E-07 1.6E-11 81.7 14.6 127 616-747 15-145 (166)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1E-06 3.6E-11 83.4 17.2 125 551-676 9-147 (213)
126 2e2e_A Formate-dependent nitri 98.6 2.2E-07 7.5E-12 85.1 11.9 120 625-749 21-145 (177)
127 3dra_A Protein farnesyltransfe 98.6 6.6E-06 2.3E-10 81.5 23.0 226 460-727 48-301 (306)
128 3u3w_A Transcriptional activat 98.6 5.8E-06 2E-10 82.7 23.2 160 553-712 80-266 (293)
129 2lni_A Stress-induced-phosphop 98.6 4E-07 1.4E-11 78.5 12.8 115 615-734 17-133 (133)
130 2vgx_A Chaperone SYCD; alterna 98.6 1.3E-07 4.4E-12 83.5 9.3 118 601-725 9-129 (148)
131 4f3v_A ESX-1 secretion system 98.6 8.4E-07 2.9E-11 85.6 15.2 184 560-749 18-238 (282)
132 2vyi_A SGTA protein; chaperone 98.6 6.8E-07 2.3E-11 76.7 13.3 116 615-735 13-130 (131)
133 1p5q_A FKBP52, FK506-binding p 98.6 2.5E-07 8.5E-12 94.6 12.1 144 578-746 146-292 (336)
134 3gyz_A Chaperone protein IPGC; 98.6 6.2E-07 2.1E-11 78.9 12.9 104 610-716 31-137 (151)
135 2kck_A TPR repeat; tetratricop 98.6 5.2E-07 1.8E-11 74.9 11.7 102 647-750 2-108 (112)
136 1na0_A Designed protein CTPR3; 98.6 1.2E-06 4E-11 74.4 14.1 114 615-733 10-125 (125)
137 2c2l_A CHIP, carboxy terminus 98.5 2.3E-07 7.8E-12 92.2 9.7 191 547-748 3-199 (281)
138 1hxi_A PEX5, peroxisome target 98.5 3.1E-07 1.1E-11 77.6 9.0 96 651-748 18-114 (121)
139 3q7a_A Farnesyltransferase alp 98.5 1.3E-05 4.5E-10 80.1 21.4 220 487-748 63-331 (349)
140 3gw4_A Uncharacterized protein 98.5 2.4E-06 8.3E-11 80.0 15.5 156 591-747 4-175 (203)
141 2uy1_A Cleavage stimulation fa 98.5 2.4E-05 8.1E-10 84.1 24.4 374 174-606 8-411 (493)
142 4gcn_A Protein STI-1; structur 98.5 4.8E-07 1.7E-11 77.3 8.8 98 650-747 8-111 (127)
143 1elw_A TPR1-domain of HOP; HOP 98.5 2.4E-06 8.1E-11 71.6 13.0 93 652-746 6-99 (118)
144 3rkv_A Putative peptidylprolyl 98.5 1.3E-06 4.5E-11 78.5 11.9 117 650-794 11-147 (162)
145 2e2e_A Formate-dependent nitri 98.4 1.6E-06 5.3E-11 79.4 12.5 130 590-725 21-155 (177)
146 2qfc_A PLCR protein; TPR, HTH, 98.4 1.7E-05 6E-10 79.2 21.3 163 550-712 77-266 (293)
147 2xcb_A PCRH, regulatory protei 98.4 1.1E-06 3.9E-11 76.8 11.0 106 616-726 20-127 (142)
148 3sz7_A HSC70 cochaperone (SGT) 98.4 1.2E-06 4.1E-11 79.0 11.5 107 614-725 11-119 (164)
149 3q49_B STIP1 homology and U bo 98.4 1.8E-06 6.2E-11 74.9 12.0 99 649-749 8-107 (137)
150 4f3v_A ESX-1 secretion system 98.4 2.9E-06 9.8E-11 81.9 14.2 130 582-715 105-240 (282)
151 3upv_A Heat shock protein STI1 98.4 2.6E-06 9E-11 72.6 12.2 108 616-728 6-121 (126)
152 1elw_A TPR1-domain of HOP; HOP 98.4 5.5E-06 1.9E-10 69.3 14.0 109 615-728 5-115 (118)
153 3gw4_A Uncharacterized protein 98.4 2.9E-06 1E-10 79.4 13.5 154 560-713 4-177 (203)
154 2dba_A Smooth muscle cell asso 98.4 4.9E-06 1.7E-10 73.1 14.2 110 615-729 29-143 (148)
155 2fbn_A 70 kDa peptidylprolyl i 98.4 1.7E-06 5.8E-11 80.8 11.5 170 556-748 12-186 (198)
156 2lni_A Stress-induced-phosphop 98.4 2.7E-06 9.3E-11 73.1 11.9 98 649-748 15-113 (133)
157 1na0_A Designed protein CTPR3; 98.4 4.7E-06 1.6E-10 70.5 13.2 97 650-748 9-106 (125)
158 3sz7_A HSC70 cochaperone (SGT) 98.4 3.7E-06 1.3E-10 75.7 13.0 94 578-676 10-105 (164)
159 1p5q_A FKBP52, FK506-binding p 98.3 3.2E-06 1.1E-10 86.3 12.8 141 547-709 146-291 (336)
160 2vyi_A SGTA protein; chaperone 98.3 5.7E-06 2E-10 70.7 12.6 98 649-748 11-109 (131)
161 1a17_A Serine/threonine protei 98.3 1.3E-05 4.4E-10 72.0 15.4 129 579-711 13-145 (166)
162 3q49_B STIP1 homology and U bo 98.3 5.3E-06 1.8E-10 71.9 11.6 101 612-715 7-109 (137)
163 2dba_A Smooth muscle cell asso 98.3 1.1E-05 3.9E-10 70.7 14.0 98 649-748 27-128 (148)
164 1hxi_A PEX5, peroxisome target 98.3 4.8E-06 1.6E-10 70.2 10.8 97 617-716 20-118 (121)
165 2fbn_A 70 kDa peptidylprolyl i 98.3 2.9E-06 1E-10 79.2 9.6 162 519-703 10-176 (198)
166 4b4t_Q 26S proteasome regulato 98.3 7.3E-06 2.5E-10 87.4 14.0 167 581-747 57-244 (434)
167 3dss_A Geranylgeranyl transfer 98.2 0.00015 5E-09 72.2 21.9 179 564-748 90-304 (331)
168 3k9i_A BH0479 protein; putativ 98.2 1.2E-06 4.3E-11 73.5 6.0 83 663-747 3-89 (117)
169 1wao_1 Serine/threonine protei 98.2 7.8E-06 2.7E-10 87.7 13.5 114 589-707 16-134 (477)
170 1wao_1 Serine/threonine protei 98.2 3.3E-06 1.1E-10 90.7 10.0 119 620-743 12-134 (477)
171 3q7a_A Farnesyltransferase alp 98.2 0.00031 1E-08 70.2 23.1 229 457-727 66-345 (349)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.6E-05 5.5E-10 84.9 14.9 162 562-747 248-414 (457)
173 2hr2_A Hypothetical protein; a 98.2 7E-06 2.4E-10 71.2 9.7 62 685-748 59-131 (159)
174 2xev_A YBGF; tetratricopeptide 98.2 2.6E-05 8.9E-10 66.5 13.3 101 619-724 7-115 (129)
175 4gcn_A Protein STI-1; structur 98.2 1.4E-05 4.9E-10 68.0 11.2 97 616-715 10-115 (127)
176 3k9i_A BH0479 protein; putativ 98.2 2.3E-06 7.8E-11 71.8 6.0 93 627-722 3-98 (117)
177 2if4_A ATFKBP42; FKBP-like, al 98.1 3.5E-06 1.2E-10 86.0 8.3 150 578-749 178-329 (338)
178 1ihg_A Cyclophilin 40; ppiase 98.1 9.1E-06 3.1E-10 83.9 11.1 138 579-740 223-362 (370)
179 3ro3_A PINS homolog, G-protein 98.1 1E-05 3.5E-10 72.3 10.2 131 617-747 12-157 (164)
180 2c2l_A CHIP, carboxy terminus 98.1 1.8E-05 6.1E-10 78.4 12.7 101 613-716 3-105 (281)
181 2kck_A TPR repeat; tetratricop 98.1 1.8E-05 6E-10 65.4 10.5 98 616-716 8-110 (112)
182 2xev_A YBGF; tetratricopeptide 98.1 2.6E-05 8.8E-10 66.6 11.8 96 653-748 5-105 (129)
183 3rkv_A Putative peptidylprolyl 98.1 6.7E-06 2.3E-10 73.7 8.3 77 650-728 63-141 (162)
184 2hr2_A Hypothetical protein; a 98.1 9.1E-06 3.1E-10 70.5 8.3 70 652-723 59-140 (159)
185 1ihg_A Cyclophilin 40; ppiase 98.1 2.5E-05 8.4E-10 80.6 12.9 113 615-748 224-336 (370)
186 3ro3_A PINS homolog, G-protein 98.1 2.5E-05 8.7E-10 69.6 11.5 134 581-714 11-160 (164)
187 1elr_A TPR2A-domain of HOP; HO 98.1 3.1E-05 1.1E-09 66.0 11.5 99 650-748 4-108 (131)
188 1elr_A TPR2A-domain of HOP; HO 98.1 2.1E-05 7.3E-10 67.0 10.4 108 616-729 6-122 (131)
189 3n71_A Histone lysine methyltr 98.0 3.6E-05 1.2E-09 81.8 13.6 125 623-749 318-465 (490)
190 2if4_A ATFKBP42; FKBP-like, al 98.0 1.4E-05 4.6E-10 81.6 10.0 149 548-716 179-332 (338)
191 1dce_A Protein (RAB geranylger 98.0 0.00021 7.1E-09 78.1 19.0 171 561-737 42-244 (567)
192 4b4t_Q 26S proteasome regulato 98.0 0.00012 4.2E-09 77.8 17.0 161 587-747 12-203 (434)
193 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 5E-05 1.7E-09 81.1 12.8 65 683-749 317-381 (457)
194 3ma5_A Tetratricopeptide repea 97.9 3.5E-05 1.2E-09 62.2 8.4 68 679-748 3-70 (100)
195 3dss_A Geranylgeranyl transfer 97.9 0.0029 9.8E-08 62.9 23.4 175 547-729 107-319 (331)
196 1na3_A Designed protein CTPR2; 97.9 7.2E-05 2.5E-09 58.9 9.2 82 650-733 9-91 (91)
197 1klx_A Cysteine rich protein B 97.8 0.00033 1.1E-08 60.3 13.7 112 628-750 9-128 (138)
198 2kat_A Uncharacterized protein 97.8 4.7E-05 1.6E-09 63.4 7.9 79 668-748 3-82 (115)
199 1zu2_A Mitochondrial import re 97.8 1.7E-05 5.8E-10 68.6 4.3 85 663-749 15-121 (158)
200 1zu2_A Mitochondrial import re 97.8 4.7E-05 1.6E-09 65.9 6.8 110 626-747 14-146 (158)
201 3n71_A Histone lysine methyltr 97.7 0.00019 6.5E-09 76.3 12.7 123 589-711 319-463 (490)
202 2l6j_A TPR repeat-containing p 97.7 8.4E-05 2.9E-09 61.2 8.1 95 649-743 3-102 (111)
203 3bee_A Putative YFRE protein; 97.7 0.00017 5.9E-09 56.7 8.3 69 679-749 2-73 (93)
204 1dce_A Protein (RAB geranylger 97.6 0.001 3.5E-08 72.6 17.1 153 591-750 40-223 (567)
205 2kat_A Uncharacterized protein 97.6 0.00013 4.6E-09 60.5 7.7 82 632-716 3-86 (115)
206 1klx_A Cysteine rich protein B 97.6 0.00045 1.5E-08 59.5 10.9 113 592-714 8-128 (138)
207 3qwp_A SET and MYND domain-con 97.5 0.0002 6.8E-09 75.0 9.0 119 657-793 294-427 (429)
208 3ma5_A Tetratricopeptide repea 97.4 0.00017 5.6E-09 58.1 5.8 68 649-716 6-74 (100)
209 1na3_A Designed protein CTPR2; 97.4 0.0009 3.1E-08 52.3 9.6 65 682-748 8-72 (91)
210 3qww_A SET and MYND domain-con 97.4 0.00016 5.5E-09 75.5 6.2 85 663-747 311-410 (433)
211 2l6j_A TPR repeat-containing p 97.4 0.00016 5.4E-09 59.5 4.9 61 580-641 5-65 (111)
212 3ly7_A Transcriptional activat 97.3 0.0017 5.8E-08 64.7 12.1 72 675-749 269-340 (372)
213 3qww_A SET and MYND domain-con 97.3 0.0017 5.9E-08 67.7 12.2 95 626-722 310-424 (433)
214 3qwp_A SET and MYND domain-con 97.1 0.0041 1.4E-07 65.0 12.9 100 623-724 296-415 (429)
215 2kc7_A BFR218_protein; tetratr 97.0 0.0029 9.9E-08 50.4 9.1 81 656-746 6-88 (99)
216 3lvg_A Clathrin heavy chain 1; 97.0 0.00033 1.1E-08 70.8 3.8 242 53-315 39-325 (624)
217 3lvg_A Clathrin heavy chain 1; 96.9 1.8E-05 6.2E-10 79.7 -6.8 459 174-705 39-534 (624)
218 1pc2_A Mitochondria fission pr 96.8 0.0073 2.5E-07 51.5 9.8 86 629-716 13-104 (152)
219 2kc7_A BFR218_protein; tetratr 96.7 0.0031 1.1E-07 50.3 6.8 59 689-749 6-65 (99)
220 3ly7_A Transcriptional activat 96.7 0.049 1.7E-06 54.3 16.5 136 577-716 192-343 (372)
221 1pc2_A Mitochondria fission pr 96.5 0.016 5.3E-07 49.5 9.7 87 594-683 13-105 (152)
222 3mkq_A Coatomer beta'-subunit; 96.5 0.19 6.6E-06 57.9 22.6 168 383-604 606-774 (814)
223 2v5f_A Prolyl 4-hydroxylase su 96.3 0.023 7.9E-07 45.6 9.5 73 649-723 4-84 (104)
224 3bee_A Putative YFRE protein; 96.2 0.038 1.3E-06 43.1 9.9 68 649-716 5-76 (93)
225 3mkq_B Coatomer subunit alpha; 96.1 0.16 5.6E-06 44.4 13.9 129 556-709 13-141 (177)
226 1qsa_A Protein (soluble lytic 96.0 2.4 8.2E-05 46.1 28.4 307 387-711 17-347 (618)
227 1wy6_A Hypothetical protein ST 95.8 0.61 2.1E-05 38.1 15.3 140 590-751 18-157 (172)
228 3mkq_A Coatomer beta'-subunit; 95.8 0.36 1.2E-05 55.6 20.2 130 517-676 633-762 (814)
229 3u64_A Protein TP_0956; tetrat 95.8 0.047 1.6E-06 52.0 9.9 84 666-751 179-272 (301)
230 1nzn_A CGI-135 protein, fissio 95.7 0.21 7.2E-06 40.8 12.1 94 628-725 15-114 (126)
231 3mkq_B Coatomer subunit alpha; 95.4 1 3.5E-05 39.4 16.1 105 452-575 12-116 (177)
232 1nzn_A CGI-135 protein, fissio 95.2 0.12 4E-06 42.3 9.1 81 665-747 16-102 (126)
233 3u64_A Protein TP_0956; tetrat 95.0 0.033 1.1E-06 53.1 6.1 107 630-746 179-296 (301)
234 2v5f_A Prolyl 4-hydroxylase su 94.5 0.24 8.1E-06 39.5 9.4 64 685-748 7-75 (104)
235 1y8m_A FIS1; mitochondria, unk 94.4 0.66 2.2E-05 38.6 11.7 32 685-716 79-110 (144)
236 3o48_A Mitochondria fission 1 94.4 0.33 1.1E-05 39.8 9.6 61 685-746 42-105 (134)
237 4gns_B Protein CSD3, chitin bi 93.4 0.43 1.5E-05 52.9 11.5 59 686-746 340-398 (754)
238 3lpz_A GET4 (YOR164C homolog); 91.3 12 0.0004 36.7 23.1 124 174-308 49-181 (336)
239 2wpv_A GET4, UPF0363 protein Y 91.1 12 0.0004 36.4 21.0 167 449-643 37-217 (312)
240 3o48_A Mitochondria fission 1 91.0 2.9 9.8E-05 34.3 10.7 75 647-723 37-116 (134)
241 3ffl_A Anaphase-promoting comp 90.7 1.7 5.8E-05 37.3 9.6 55 621-675 27-88 (167)
242 1wy6_A Hypothetical protein ST 90.6 6.2 0.00021 32.4 15.2 140 387-545 18-157 (172)
243 3ffl_A Anaphase-promoting comp 90.5 0.98 3.4E-05 38.8 8.0 32 652-683 124-155 (167)
244 4b4t_P 26S proteasome regulato 90.4 6.6 0.00023 40.9 16.1 316 390-750 30-388 (445)
245 4h7y_A Dual specificity protei 90.3 1.5 5.2E-05 36.8 8.6 53 664-716 74-127 (161)
246 2wpv_A GET4, UPF0363 protein Y 90.2 14 0.00048 35.8 20.3 103 174-287 47-158 (312)
247 1y8m_A FIS1; mitochondria, unk 90.0 5.6 0.00019 33.1 11.8 62 612-676 37-103 (144)
248 4fhn_B Nucleoporin NUP120; pro 89.7 3.5 0.00012 49.1 15.0 143 518-668 817-989 (1139)
249 4h7y_A Dual specificity protei 89.5 1.1 3.7E-05 37.6 7.2 55 695-751 72-126 (161)
250 4b4t_P 26S proteasome regulato 85.5 24 0.00081 36.6 16.5 185 492-676 30-244 (445)
251 3txn_A 26S proteasome regulato 83.8 35 0.0012 34.5 16.2 92 584-675 104-206 (394)
252 3txn_A 26S proteasome regulato 83.5 9.3 0.00032 38.6 11.9 26 550-575 21-46 (394)
253 3lpz_A GET4 (YOR164C homolog); 83.5 35 0.0012 33.3 23.3 166 449-642 39-215 (336)
254 2ff4_A Probable regulatory pro 83.4 7.1 0.00024 39.8 11.3 73 582-655 174-250 (388)
255 1zbp_A Hypothetical protein VP 83.2 5.7 0.0002 37.2 9.3 113 623-748 6-129 (273)
256 1v54_E Cytochrome C oxidase po 82.6 6.6 0.00022 30.2 7.6 60 393-452 27-86 (109)
257 4gns_B Protein CSD3, chitin bi 82.4 5.4 0.00018 44.3 10.3 125 551-678 251-399 (754)
258 2qx5_A Nucleoporin NIC96; mRNA 82.3 43 0.0015 36.5 17.2 44 379-423 155-198 (661)
259 1v54_E Cytochrome C oxidase po 80.5 7.2 0.00025 30.0 7.2 63 493-556 25-87 (109)
260 2p58_C Putative type III secre 79.6 16 0.00053 28.1 8.6 62 451-517 46-107 (116)
261 2uwj_G Type III export protein 79.1 15 0.00051 28.1 8.4 62 451-517 45-106 (115)
262 2uwj_G Type III export protein 78.9 20 0.00067 27.5 9.7 61 555-618 46-106 (115)
263 2p58_C Putative type III secre 78.3 21 0.00071 27.4 10.1 61 555-618 47-107 (116)
264 2ff4_A Probable regulatory pro 75.4 6.5 0.00022 40.1 7.9 60 685-746 173-232 (388)
265 3esl_A Checkpoint serine/threo 74.6 21 0.0007 31.8 9.6 50 699-748 95-144 (202)
266 4ady_A RPN2, 26S proteasome re 73.8 1.3E+02 0.0044 34.3 40.3 232 379-617 414-664 (963)
267 4b4t_R RPN7, 26S proteasome re 71.9 20 0.00067 37.1 10.6 58 652-709 133-194 (429)
268 3ltm_A Alpha-REP4; protein eng 71.7 56 0.0019 29.3 19.3 48 547-594 94-141 (211)
269 1zbp_A Hypothetical protein VP 71.5 16 0.00055 34.3 8.6 114 588-716 6-133 (273)
270 2y69_E Cytochrome C oxidase su 71.2 25 0.00087 28.7 8.4 59 394-452 71-129 (152)
271 4b4t_R RPN7, 26S proteasome re 67.9 19 0.00066 37.1 9.5 97 549-645 132-239 (429)
272 2y69_E Cytochrome C oxidase su 67.0 32 0.0011 28.1 8.2 62 494-556 69-130 (152)
273 4fhn_B Nucleoporin NUP120; pro 66.8 59 0.002 38.6 14.6 166 553-737 817-989 (1139)
274 4a1g_A Mitotic checkpoint seri 66.7 38 0.0013 28.6 9.2 49 702-750 84-132 (152)
275 1qsa_A Protein (soluble lytic 66.5 1.5E+02 0.0051 32.1 36.5 385 174-651 86-486 (618)
276 3esl_A Checkpoint serine/threo 64.2 58 0.002 29.0 10.3 54 594-648 94-148 (202)
277 2wvi_A Mitotic checkpoint seri 61.6 49 0.0017 28.4 9.1 49 702-750 79-127 (164)
278 2gmg_A Hypothetical protein PF 61.6 8.7 0.0003 29.7 3.9 30 779-808 42-77 (105)
279 3eiq_C Programmed cell death p 61.4 85 0.0029 31.1 12.1 65 551-615 220-289 (358)
280 3ltj_A Alpharep-4; protein eng 56.8 1E+02 0.0036 27.1 18.8 48 547-594 89-136 (201)
281 4a1g_A Mitotic checkpoint seri 52.4 1.1E+02 0.0036 25.9 9.8 52 596-648 82-134 (152)
282 3bqo_A Telomeric repeat-bindin 49.0 78 0.0027 27.9 8.1 51 666-716 94-150 (211)
283 1wdy_A 2-5A-dependent ribonucl 47.4 1E+02 0.0035 28.9 10.4 45 425-469 193-240 (285)
284 1wdy_A 2-5A-dependent ribonucl 46.6 44 0.0015 31.6 7.6 25 381-409 7-31 (285)
285 2wvi_A Mitotic checkpoint seri 46.6 1.4E+02 0.0048 25.6 10.2 52 597-649 78-130 (164)
286 4ady_A RPN2, 26S proteasome re 44.4 4.1E+02 0.014 30.3 37.5 222 454-681 383-625 (963)
287 3ltj_A Alpharep-4; protein eng 43.2 1.7E+02 0.0058 25.6 19.4 145 452-607 35-179 (201)
288 3ltm_A Alpha-REP4; protein eng 42.0 1.8E+02 0.0063 25.7 19.1 123 476-607 62-184 (211)
289 4aez_C MAD3, mitotic spindle c 39.3 96 0.0033 28.1 7.7 50 700-749 131-180 (223)
290 2nsz_A Programmed cell death p 36.7 1.2E+02 0.0041 24.7 7.4 63 551-613 10-77 (129)
291 4b4t_S RPN3, 26S proteasome re 36.3 1.9E+02 0.0065 30.2 10.4 67 650-716 231-303 (523)
292 1k1a_A B-cell lymphoma 3-encod 35.4 2.5E+02 0.0084 25.2 11.5 24 77-100 13-36 (241)
293 3bu8_A Telomeric repeat-bindin 35.2 1.7E+02 0.0058 26.2 8.2 54 630-683 88-147 (235)
294 1k1a_A B-cell lymphoma 3-encod 35.0 2.5E+02 0.0086 25.2 11.2 28 383-410 13-40 (241)
295 2qx5_A Nucleoporin NIC96; mRNA 34.0 4.9E+02 0.017 28.3 21.5 37 382-422 300-336 (661)
296 3kae_A CDC27, possible protein 33.7 2.3E+02 0.0079 24.4 10.7 175 558-749 43-238 (242)
297 4aez_C MAD3, mitotic spindle c 33.7 1.8E+02 0.0063 26.3 8.6 52 596-648 131-183 (223)
298 3jxi_A Vanilloid receptor-rela 33.1 97 0.0033 28.7 7.5 56 77-134 9-73 (260)
299 2ion_A PDCD4, programmed cell 30.0 1.1E+02 0.0037 25.8 6.2 62 551-612 12-78 (152)
300 3hra_A Ankyrin repeat family p 28.4 1.5E+02 0.0053 25.8 7.7 80 386-470 12-94 (201)
301 3mv2_A Coatomer subunit alpha; 28.3 4.1E+02 0.014 25.6 13.9 127 589-749 124-257 (325)
302 2r9g_A AAA ATPase, central reg 27.9 3.2E+02 0.011 24.2 9.3 66 379-445 14-87 (204)
303 2d2s_A Exocyst complex compone 27.6 1.7E+02 0.0059 26.8 7.7 21 485-505 25-45 (235)
304 3aji_A 26S proteasome non-ATPa 27.2 2.5E+02 0.0087 25.0 9.1 15 80-94 13-27 (231)
305 2xk0_A Polycomb protein PCL; t 26.7 36 0.0012 23.8 2.1 21 10-30 5-25 (69)
306 3eu9_A Huntingtin-interacting 26.2 2.4E+02 0.0083 25.2 8.9 20 46-65 13-32 (240)
307 2nsz_A Programmed cell death p 25.8 2.7E+02 0.0091 22.6 8.6 62 449-512 11-77 (129)
308 3bu8_A Telomeric repeat-bindin 25.5 1.1E+02 0.0039 27.2 5.5 67 666-734 88-163 (235)
309 3ygs_P Procaspase 9; apoptosis 25.3 68 0.0023 24.6 3.8 37 174-210 51-87 (97)
310 2d2s_A Exocyst complex compone 25.1 1.7E+02 0.0059 26.8 7.1 86 586-675 25-116 (235)
311 2ion_A PDCD4, programmed cell 24.2 2.3E+02 0.0078 23.8 7.2 62 449-512 13-79 (152)
312 3kea_A K1L; tropism, ANK repea 24.0 4.5E+02 0.015 24.6 12.7 17 397-413 209-225 (285)
313 3eu9_A Huntingtin-interacting 23.0 1.7E+02 0.0057 26.4 7.0 13 174-186 87-99 (240)
314 4b4t_S RPN3, 26S proteasome re 23.0 1.6E+02 0.0054 30.8 7.0 63 684-748 232-299 (523)
315 1n11_A Ankyrin; clathrin, BAND 22.6 1.3E+02 0.0046 30.6 6.8 21 450-470 82-102 (437)
316 3b7b_A Euchromatic histone-lys 22.4 3E+02 0.01 24.6 8.6 205 90-324 24-236 (237)
317 1n11_A Ankyrin; clathrin, BAND 22.3 2.6E+02 0.0088 28.3 9.0 19 452-470 51-69 (437)
318 2pm7_A Protein WEB1, protein t 21.8 6.2E+02 0.021 25.4 13.6 25 721-745 338-362 (399)
319 3ljn_A Hypothetical protein; a 21.7 3.3E+02 0.011 26.6 9.4 80 270-355 177-266 (364)
320 2rfa_A Transient receptor pote 21.7 3.7E+02 0.013 23.9 9.1 47 212-258 135-183 (232)
321 2y1l_E Darpin-8.4; hydrolase-i 21.5 3.3E+02 0.011 22.7 8.2 43 46-89 18-63 (169)
322 1ya0_A SMG-7 transcript varian 21.2 3.5E+02 0.012 28.2 9.4 76 617-696 155-233 (497)
323 3mkr_B Coatomer subunit alpha; 20.6 2.5E+02 0.0086 27.0 7.4 109 589-715 112-230 (320)
324 3kea_A K1L; tropism, ANK repea 20.1 3.3E+02 0.011 25.5 8.6 14 319-332 212-225 (285)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-40 Score=372.78 Aligned_cols=500 Identities=10% Similarity=0.008 Sum_probs=343.8
Q ss_pred hhc-CCcchHHHhhhcCCCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHH
Q 046631 50 CQE-GRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKA 128 (813)
Q Consensus 50 ~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 128 (813)
+.. |.+..++..|+.++.+++..|+.++..+.+.|++++|+.+|++|... .|+..++..++.+|.+.|+++.|..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI----TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh----CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 344 77888888999888889999999999999999999999999999864 4577899999999999999999999
Q ss_pred HHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccC-CC------------------
Q 046631 129 VHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMR-RR------------------ 189 (813)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~-~~------------------ 189 (813)
+|+.+... .++..+++.++.+|.++ |++++|.++|+++. ..
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKL------------------YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKL 198 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHT------------------TCHHHHHHHHCSSCTTC----------CCCSSCCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHH------------------hhHHHHHHHHhccCCccccccccccccccccccch
Confidence 99987644 67889999999999999 99999999999544 33
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHhhCCCChhHH--HHH-HHHHHHhCCCCCCcHHH
Q 046631 190 NVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPST-ISFVNVFPALSSLGDYKSA--DVV-YGLLVKLGSEYVNDLFV 265 (813)
Q Consensus 190 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a--~~~-~~~~~~~~~~~~~~~~~ 265 (813)
+..+|+.++.+|.+.|++++|+++|++|.+. .|+. ..+..+...+...+..+.+ ..+ +..+...+.. ....+
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~ 274 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA--FLRSL 274 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH--HHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH--HHHHH
Confidence 4779999999999999999999999999885 3543 3455454444333322211 111 3444444433 45566
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhccc
Q 046631 266 ASSAIFMYAELGCFDFARKIFDNCLE--RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQL 343 (813)
Q Consensus 266 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 343 (813)
++.++..|.+.|++++|.++|+++.+ ++..+|+.++..|.+.|++++|+.+|++.+...
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------- 335 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID------------------- 335 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-------------------
Confidence 77778888888999999999988877 688888888888888888888888884433321
Q ss_pred CcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 046631 344 QELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASN 423 (813)
Q Consensus 344 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 423 (813)
+.+..+|+.++.+|.+.|++++|..+++++.+.. +.+..++..
T Consensus 336 -----------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~------- 378 (597)
T 2xpi_A 336 -----------------------------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLA------- 378 (597)
T ss_dssp -----------------------------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHH-------
T ss_pred -----------------------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHH-------
Confidence 2356667777777777788777777777776431 112222222
Q ss_pred CCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHH
Q 046631 424 LRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFR 502 (813)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~ 502 (813)
++.+|.+.|++++|.++|+++....| +..+|+.++.+|.+.|++++|+++|+
T Consensus 379 ---------------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 379 ---------------------------VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp ---------------------------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ---------------------------HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22333333333333333333221122 33344444444444444444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHH
Q 046631 503 QMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTY 582 (813)
Q Consensus 503 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 582 (813)
++.+.+ ..+..+|
T Consensus 432 ~~~~~~-------------------------------------------------------------------~~~~~~~ 444 (597)
T 2xpi_A 432 TAARLF-------------------------------------------------------------------QGTHLPY 444 (597)
T ss_dssp HHHHTT-------------------------------------------------------------------TTCSHHH
T ss_pred HHHHhC-------------------------------------------------------------------ccchHHH
Confidence 443321 1245566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCCC--hhHHHHHH
Q 046631 583 TTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEY---KIQPS--TEHYCCVA 657 (813)
Q Consensus 583 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~ 657 (813)
+.++.+|.+.|++++|+++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 666777777777777777777777642 3356677777777777777777777777776542 55676 67888888
Q ss_pred HHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 046631 658 DMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA 730 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 730 (813)
.+|.+.|++++|.++++++ ...|+...+|..++.+|...|++++|...++++++++|++ +..+..++++|.
T Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~ 595 (597)
T 2xpi_A 524 HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE--IMASDLLKRALE 595 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHh
Confidence 8888888888888888886 3456556689999999999999999999999999999998 888888888774
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-39 Score=364.67 Aligned_cols=496 Identities=9% Similarity=-0.033 Sum_probs=383.1
Q ss_pred CChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHH
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLV 253 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 253 (813)
|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|++++|..+|+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 144 (597)
T 2xpi_A 67 GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKED 144 (597)
T ss_dssp ---------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh
Confidence 7778888889999989999999999999999999999999999985 57888999999999999999999999999886
Q ss_pred HhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhH
Q 046631 254 KLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTF 333 (813)
Q Consensus 254 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~ 333 (813)
... ++..+++.++.+|.++|++++|.++|+++...+... .++.+.+.. ..+
T Consensus 145 ~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~------------~~~-------- 195 (597)
T 2xpi_A 145 LYN----RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLMQ------------DGG-------- 195 (597)
T ss_dssp GGG----TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------CC------------CSS--------
T ss_pred ccc----cchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----ccccccccc------------ccc--------
Confidence 543 789999999999999999999999999654333100 000000000 000
Q ss_pred HHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCC-Hh
Q 046631 334 LSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMID-SV 412 (813)
Q Consensus 334 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~ 412 (813)
.+.+..+|+.++.+|.+.|++++|+++|++|.+.+ |+ ..
T Consensus 196 --------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~ 235 (597)
T 2xpi_A 196 --------------------------------------IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYE 235 (597)
T ss_dssp --------------------------------------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred --------------------------------------cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhH
Confidence 12234556666666666666666666666666542 32 22
Q ss_pred HHHHHHHHHhcCCChHHHH--HH-HHHHHHhCCCCc-chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHH
Q 046631 413 TVTALLSAASNLRNQDVGK--QT-HAYLLRHGIHFE-GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGY 488 (813)
Q Consensus 413 t~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 488 (813)
.+..+...+...+..+... .+ +..+...+.... .+++.++.+|.+.|++++|.++|+++....++..+|+.++.+|
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 3333322222221111110 00 222222233223 3445567888899999999999999886557999999999999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 046631 489 TQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAA 568 (813)
Q Consensus 489 ~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 568 (813)
.+.|++++|+.+|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999865 3467789999999999999999999999998653 457889999999999999999999
Q ss_pred HHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC
Q 046631 569 NVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK 645 (813)
Q Consensus 569 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 645 (813)
++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.
T Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 470 (597)
T 2xpi_A 394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-- 470 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 9999876 3478899999999999999999999999999863 457789999999999999999999999999865
Q ss_pred CCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhC-------cCCCh-HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 646 IQP-STEHYCCVADMLGRVGKVVEAYEFVKELG-------EEGNV-LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 646 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.| +..+|..++.+|.+.|++++|+++++++. ..|+. ..+|..++.+|.+.|++++|+..++++++.+|++
T Consensus 471 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 471 -FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred -CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 45 58999999999999999999999999982 25553 4599999999999999999999999999999998
Q ss_pred CCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 717 SMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 717 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+..+..++.+|.+.|++++|.+.++++.+.
T Consensus 550 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 550 --ANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999964
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=8e-25 Score=232.47 Aligned_cols=375 Identities=14% Similarity=0.090 Sum_probs=245.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHhCCCCCCh-hhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchH
Q 046631 301 IGGYVQNNHPVEAIELFVQVLELDEIVFDD-VTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSW 379 (813)
Q Consensus 301 i~~~~~~g~~~~A~~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (813)
...+.+.|++++|+..+.+..... |+. ..+..+...+...|+++.|...+....+. .+.+..+|
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~------------~p~~~~~~ 70 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ------------NPLLAEAY 70 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------CTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------CCCchHHH
Confidence 345566777777777774444432 322 23333344445555555555555555442 12234455
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhc
Q 046631 380 NTMISAFVQNGLDDEGLMLVYEMQKQGFMID-SVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKS 458 (813)
Q Consensus 380 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (813)
..+...|.+.|++++|+..|+++.+. .|+ ..+|..+..++...|+++.|...+..+++..+....+
T Consensus 71 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------- 137 (388)
T 1w3b_A 71 SNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV----------- 137 (388)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHH-----------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-----------
Confidence 55555555556666666555555543 232 2344444444444444444444444444443333333
Q ss_pred CCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHH
Q 046631 459 GLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGF 538 (813)
Q Consensus 459 g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 538 (813)
+..+...+...|++++|...|+++.+.. +-+..++..+...+...|++++|...++.
T Consensus 138 ----------------------~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 138 ----------------------RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp ----------------------HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444444455555555555544431 11233444444445555555555555554
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CH
Q 046631 539 SIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--E-KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP-DA 614 (813)
Q Consensus 539 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 614 (813)
+.+.. +.+...+..+...+...|++++|...|++.. . .+..+|..+...|...|++++|++.|+++.+. .| +.
T Consensus 195 al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 271 (388)
T 1w3b_A 195 AVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFP 271 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCH
Confidence 44432 1234566777778888888888888887665 2 36788888999999999999999999999984 44 45
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGS 692 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~ 692 (813)
.++..+...+.+.|++++|...|+++.+. .| +..++..++.++.+.|++++|.+.++++ ...|+...+|..++.+
T Consensus 272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 272 DAYCNLANALKEKGSVAEAEDCYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 67888888999999999999999999865 45 5888999999999999999999999987 4456666689999999
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 693 CRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 693 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
+.+.|++++|...+++++++.|+. +..+..++.++.+.|+
T Consensus 349 ~~~~g~~~~A~~~~~~a~~~~p~~--~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 349 LQQQGKLQEALMHYKEAIRISPTF--ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCC--HHHHHhHHHHHHHccC
Confidence 999999999999999999999988 8888889888877663
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=5.7e-25 Score=233.60 Aligned_cols=354 Identities=17% Similarity=0.159 Sum_probs=311.5
Q ss_pred HHHHHHHCCCcHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCC
Q 046631 382 MISAFVQNGLDDEGLMLVYEMQKQGFMIDS-VTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGL 460 (813)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (813)
+...+.+.|++++|++.++++.+. .|+. ..+..+...+...|+++.+...+...++..+.....+..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 345678899999999999998876 4544 4556666778899999999999999999887666889999999999999
Q ss_pred HHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCCChHHHHHHHHH
Q 046631 461 IKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNV-VTIASVLPACNPMGNIELGKQLHGF 538 (813)
Q Consensus 461 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 538 (813)
+++|...|+++....| +..+|..+..++.+.|++++|+..|+++.+. .|+. ..+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999776667 5568999999999999999999999999985 4554 4566777888899999999999999
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H
Q 046631 539 SIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--E-KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-A 614 (813)
Q Consensus 539 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 614 (813)
+.+.. +.+..++..+...|.+.|++++|...|+++. . .+...|..+...+...|++++|+..|++..+ ..|+ .
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCH
Confidence 98864 3357789999999999999999999999886 3 3678899999999999999999999999998 4554 6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGS 692 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~ 692 (813)
.++..+...+...|++++|...|+++.+. .|+ ..+|..++.++.+.|++++|++.++++ ...|+...+|..++..
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 68889999999999999999999999854 675 888999999999999999999999987 4556666799999999
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 693 CRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 693 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+...|++++|...++++++..|++ +..+..++.+|.+.|++++|.+.++++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEF--AAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTC--HHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999998 89999999999999999999999999984
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=9.6e-27 Score=250.43 Aligned_cols=185 Identities=12% Similarity=0.128 Sum_probs=172.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCC---------hHHHHHHHHHHHHcCCCCch
Q 046631 478 QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGN---------IELGKQLHGFSIRYLLDQNV 548 (813)
Q Consensus 478 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 548 (813)
...++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888899999999999999999999999999999999999999987654 68899999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIP----EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSAC 624 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 624 (813)
.+|++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999987 5799999999999999999999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRV 663 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 663 (813)
++.|++++|.+++++|.+. ++.|+..+|+.++..++..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999988 9999999999999988753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1e-25 Score=242.49 Aligned_cols=196 Identities=12% Similarity=0.112 Sum_probs=165.3
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCC
Q 046631 296 VWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERD 375 (813)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (813)
.++.+|.+|++.|++++|+++| +.|...|+.||..||+++|.+|++.+....+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf-~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------------------------- 80 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLY-DEARRNGVQLSQYHYNVLLYVCSLAEAATES-------------------------- 80 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHH-HHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHH-HHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------------------------
Confidence 4677777788888888888887 7777777777777777777777665543221
Q ss_pred cchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 046631 376 VVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMY 455 (813)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (813)
.+.+.+++|.++|++|.+.|+.||..||+++|.+|++.|+++.|.++++.|.+.|+
T Consensus 81 -----------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~------------- 136 (501)
T 4g26_A 81 -----------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI------------- 136 (501)
T ss_dssp -----------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-------------
T ss_pred -----------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------
Confidence 12345688999999999999999999999988888888888888888887777776
Q ss_pred HhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHH
Q 046631 456 AKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQL 535 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 535 (813)
.||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++
T Consensus 137 -------------------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~l 197 (501)
T 4g26_A 137 -------------------QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 197 (501)
T ss_dssp -------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhc
Q 046631 536 HGFSIRYLLDQNVFVGTSLIDMYSKS 561 (813)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~li~~~~~~ 561 (813)
+++|.+.|..|+..+|+.++..|+..
T Consensus 198 l~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 198 LQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999988764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.9e-21 Score=209.67 Aligned_cols=340 Identities=12% Similarity=0.069 Sum_probs=255.0
Q ss_pred CCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHH
Q 046631 373 ERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLI 452 (813)
Q Consensus 373 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 452 (813)
+.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+++.++....++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3456778889999999999999999999988752 345677777778888888888888888888777665556666777
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCC
Q 046631 453 DMYAKSGLIKTARQIFEKNDSGDRDQ----ATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGN 528 (813)
Q Consensus 453 ~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 528 (813)
..|.+.|++++|...|+++....|+. ..|..++..+...+ +..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCC
Confidence 77777777777777777766555533 44444433311100 1111222334455
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 046631 529 IELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSM 605 (813)
Q Consensus 529 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 605 (813)
+++|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++. ..+..+|..++..|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555554432 2355667788888888888888888888776 347888999999999999999999999999
Q ss_pred HhCCCCCCHH-HHHHH------------HHHHhccCcHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCCHH
Q 046631 606 KGCGIEPDAI-TFVAV------------LSACSYAGLVDEGLQIFDLMQQEYKIQPS-----TEHYCCVADMLGRVGKVV 667 (813)
Q Consensus 606 ~~~g~~p~~~-~~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~ 667 (813)
.+ ..|+.. .+..+ ...|.+.|++++|..+|+++.+. .|+ ..++..++.++.+.|+++
T Consensus 238 ~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 238 LK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 87 455544 34333 77899999999999999999865 565 458899999999999999
Q ss_pred HHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHH------------HHHHhcC-
Q 046631 668 EAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLS------------NIYAEEG- 733 (813)
Q Consensus 668 ~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~------------~~~~~~g- 733 (813)
+|++.++++ ...|+...+|..++.+|...|++++|...++++++++|++ +..+..++ +.|...|
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND--QQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC--HHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch--HHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 999999996 5567666799999999999999999999999999999998 88998888 4455556
Q ss_pred ----CcHHHHHHHHH
Q 046631 734 ----NWENVDKVRKE 744 (813)
Q Consensus 734 ----~~~~A~~~~~~ 744 (813)
+.+++.+.+++
T Consensus 391 ~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRK 405 (450)
T ss_dssp STTCCTTHHHHHHHH
T ss_pred CccCCHHHHHHHHHH
Confidence 55566777765
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-21 Score=216.55 Aligned_cols=364 Identities=10% Similarity=-0.040 Sum_probs=307.0
Q ss_pred cchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 046631 376 VVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMY 455 (813)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (813)
...|......+.+.|++++|+..|+++.+.. |+..++..+..++...|+++.|...++.+++.++....++..+..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3456677888999999999999999999874 78999999999999999999999999999998876668888899999
Q ss_pred HhcCCHHHHHHHHhhcCCCCC-C---------------------------------------------------------
Q 046631 456 AKSGLIKTARQIFEKNDSGDR-D--------------------------------------------------------- 477 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~~~-~--------------------------------------------------------- 477 (813)
.+.|++++|...|+++....| +
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999987643332 1
Q ss_pred ----------------------hhhHHHHHHHHHh---CCChHHHHHHHHHHHH-----CCCCC--------CHHHHHHH
Q 046631 478 ----------------------QATWNAMIAGYTQ---NGLLEEAFVAFRQMLE-----HNVTP--------NVVTIASV 519 (813)
Q Consensus 478 ----------------------~~~~~~li~~~~~---~~~~~~A~~~~~~m~~-----~~~~p--------~~~t~~~l 519 (813)
...+......+.. .|++++|+..|+++.. ..-.| +...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 2223333333443 8999999999999988 32122 34567778
Q ss_pred HHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChH
Q 046631 520 LPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSE 596 (813)
Q Consensus 520 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 596 (813)
...+...|+++.|..+++.+.+.... ...+..+...|...|++++|...|+++.+ .+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999987644 88899999999999999999999998763 36789999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHH
Q 046631 597 RALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKE 675 (813)
Q Consensus 597 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 675 (813)
+|+..++++.+.. +.+...+..+...+...|++++|..+++++.+. .| +...+..++.+|.+.|++++|...+++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999853 335668888999999999999999999999865 45 478899999999999999999999988
Q ss_pred hC-cCCCh------HHHHHHHHHHHHH---hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 676 LG-EEGNV------LEIWGSLLGSCRL---HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 676 ~~-~~~~~------~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
+. ..|.. ..+|..++..+.. .|++++|...++++++..|++ +..+..++.+|.+.|++++|.+.++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS--EQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 62 12222 2289999999999 999999999999999999998 899999999999999999999999999
Q ss_pred HHCC
Q 046631 746 RERG 749 (813)
Q Consensus 746 ~~~~ 749 (813)
.+..
T Consensus 476 ~~~~ 479 (514)
T 2gw1_A 476 ADLA 479 (514)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 8643
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.8e-21 Score=213.69 Aligned_cols=262 Identities=11% Similarity=-0.038 Sum_probs=212.2
Q ss_pred cCCHHHHHHHHhhcCC-----C--C-------C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046631 458 SGLIKTARQIFEKNDS-----G--D-------R-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPA 522 (813)
Q Consensus 458 ~g~~~~A~~~~~~~~~-----~--~-------~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 522 (813)
.|++++|...|+++.. . . | +...|..+...+...|++++|+..|+++.+.. |+...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence 6777777777776543 2 1 1 34567778888888899999999988888764 346777788888
Q ss_pred hccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHH
Q 046631 523 CNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERAL 599 (813)
Q Consensus 523 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 599 (813)
+...|+++.|...++.+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|+
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888887754 3356678889999999999999999998875 346788999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhc---cCCHHHHHHH
Q 046631 600 SLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGR---VGKVVEAYEF 672 (813)
Q Consensus 600 ~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~ 672 (813)
..++++.+.. +.+..++..+...+...|++++|...++++.+...-.++ ...+..++.++.+ .|++++|.+.
T Consensus 359 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 359 TLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 9999998852 335668888899999999999999999998865222222 3489999999999 9999999999
Q ss_pred HHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 673 VKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 673 ~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
++++ ...|+...+|..+...+...|++++|...++++++++|++ +..+..+
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~ 489 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM--EEKLQAI 489 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH--HHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc--HHHHHHH
Confidence 9987 4556666699999999999999999999999999999997 6665554
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.6e-19 Score=200.73 Aligned_cols=218 Identities=12% Similarity=-0.013 Sum_probs=107.4
Q ss_pred HhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHH
Q 046631 522 ACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERA 598 (813)
Q Consensus 522 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 598 (813)
.+...|+++.|...+..+.+.. |+...+..+...|...|++++|.+.|+++. ..+..+|..+...|...|++++|
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3344444444444444444432 223344444444555555555555554443 12344555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhC
Q 046631 599 LSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELG 677 (813)
Q Consensus 599 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 677 (813)
+..|+++.+.. +.+...+..+...+...|++++|..+++++.+. .|+ ...+..++.++.+.|++++|.+.++++.
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555532 112334555555555555555555555555533 232 4455555555555555555555555531
Q ss_pred ----cCCC---hHHHHHHHHHHHHHh----------CCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHH
Q 046631 678 ----EEGN---VLEIWGSLLGSCRLH----------GHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDK 740 (813)
Q Consensus 678 ----~~~~---~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 740 (813)
..+. ....+..+...+... |++++|...++++++.+|++ +..+..++.+|.+.|++++|.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS--EQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccHHHHHH
Confidence 1110 010233334444444 55555555555555555555 5555555555555566666555
Q ss_pred HHHHHHH
Q 046631 741 VRKEMRE 747 (813)
Q Consensus 741 ~~~~m~~ 747 (813)
.++++.+
T Consensus 484 ~~~~al~ 490 (537)
T 3fp2_A 484 LFEDSAI 490 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=6.6e-20 Score=198.86 Aligned_cols=308 Identities=13% Similarity=0.003 Sum_probs=230.6
Q ss_pred CHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHH
Q 046631 410 DSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGY 488 (813)
Q Consensus 410 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~ 488 (813)
+...+..+...+...|+++.|..++..+++..+....++..+...|...|++++|...|+++....| +...|..+...|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3445666666666666666666666666665544445556666666666666666666666544344 455666666666
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 046631 489 TQNGLLEEAFVAFRQMLEHNVTPNV----VTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVI 564 (813)
Q Consensus 489 ~~~~~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 564 (813)
.+.|++++|...|+++.+. .|+. ..+..+...+. ...+..+...|.+.|++
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDE-----------------------MQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTCH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcCCH
Confidence 6666666666666666653 2332 22222222210 01133445668899999
Q ss_pred HHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046631 565 NYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQ 641 (813)
Q Consensus 565 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 641 (813)
++|...|+++. ..+...+..++..|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+++.
T Consensus 160 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999876 3478899999999999999999999999998852 4457789999999999999999999999998
Q ss_pred HhcCCCCC-hhHHHHH------------HHHHhccCCHHHHHHHHHHh-CcCCCh----HHHHHHHHHHHHHhCCHHHHH
Q 046631 642 QEYKIQPS-TEHYCCV------------ADMLGRVGKVVEAYEFVKEL-GEEGNV----LEIWGSLLGSCRLHGHSELAE 703 (813)
Q Consensus 642 ~~~~~~p~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~a~ 703 (813)
+. .|+ ...+..+ +..+.+.|++++|++.++++ ...|+. ...|..++..+.+.|++++|+
T Consensus 239 ~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 239 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred Hh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 54 665 5555544 89999999999999999987 334443 237888999999999999999
Q ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 704 VVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 704 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..++++++..|++ +..+..++.+|...|++++|...++++.+.
T Consensus 316 ~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 316 RVCSEVLQMEPDN--VNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999998 899999999999999999999999999864
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.2e-19 Score=201.70 Aligned_cols=450 Identities=12% Similarity=0.018 Sum_probs=305.4
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 046631 191 VVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAI 270 (813)
Q Consensus 191 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 270 (813)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++.+.+..+. +..++..+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD---HSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHHHHHH
Confidence 3456777788888899999999998888743 235567777888888888888888888888887754 667777777
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHH
Q 046631 271 FMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQ 350 (813)
Q Consensus 271 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 350 (813)
..|...|++++|...|+.+ ..+....+..+..+...+...+|+..+++.+.... +.
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~---~~-------------------- 156 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDE---GR-------------------- 156 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC----------------------------
T ss_pred HHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCc---cc--------------------
Confidence 7888888888888777633 22222222233344444445566666633322110 00
Q ss_pred HHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHH
Q 046631 351 QLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVG 430 (813)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a 430 (813)
.+........+..+....+.+.+...+..... ..+....+...+.......
T Consensus 157 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~----- 207 (537)
T 3fp2_A 157 ----------------------GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSAT----- 207 (537)
T ss_dssp ------------------------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCS-----
T ss_pred ----------------------cccccchHhHHHHHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhh-----
Confidence 00011112223333344444444333322211 1111111111111100000
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCC--------hhhHHHHHHHHHhCCChHHHHHHHH
Q 046631 431 KQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRD--------QATWNAMIAGYTQNGLLEEAFVAFR 502 (813)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~A~~~~~ 502 (813)
........|++++|..+|+++....|+ ..+|..+...+...|++++|+..|+
T Consensus 208 --------------------~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 208 --------------------DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------hhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 011112235677888888877665664 2346677788889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCH
Q 046631 503 QMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNS 579 (813)
Q Consensus 503 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~ 579 (813)
++... .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|.+.|+++. ..+.
T Consensus 268 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 344 (537)
T 3fp2_A 268 ESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344 (537)
T ss_dssp HHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred HHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence 99885 4667788888899999999999999999988765 3367789999999999999999999999876 3367
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHH
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCC 655 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 655 (813)
..|..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+...-.++ ...+..
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 899999999999999999999999999853 334568888899999999999999999998765211111 233555
Q ss_pred HHHHHhcc----------CCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHH
Q 046631 656 VADMLGRV----------GKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHV 723 (813)
Q Consensus 656 l~~~~~~~----------g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~ 723 (813)
++.++.+. |++++|...++++ ...|+...+|..++..+...|++++|...+++++++.|.. +....
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~ 500 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM--DEKLQ 500 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C--HHHHH
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--HHHHH
Confidence 66778888 9999999999987 4567767799999999999999999999999999999987 55433
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=5.7e-16 Score=175.64 Aligned_cols=317 Identities=12% Similarity=0.078 Sum_probs=227.7
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcC
Q 046631 380 NTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSG 459 (813)
Q Consensus 380 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 459 (813)
.-+...+...|.+++|..+|++.. -.......++. ..++++.|.++.+.+ ..+.++..+..++.+.|
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCC
Confidence 345666777788888888887742 11111222222 556677777776643 33477778888888888
Q ss_pred CHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHH
Q 046631 460 LIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFS 539 (813)
Q Consensus 460 ~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 539 (813)
++++|++.|.+. .|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+.
T Consensus 1120 ~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred CHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 888888888664 356677778888888888888888888776643 33333334777788887777544442
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 046631 540 IRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVA 619 (813)
Q Consensus 540 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 619 (813)
+ .++...+..+.+.|...|++++|..+|..+ ..|..+...|.+.|++++|++.+++. .+..+|..
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 1 334455667888888888888888888874 47888888888888888888888876 34578888
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh--
Q 046631 620 VLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH-- 696 (813)
Q Consensus 620 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~-- 696 (813)
+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.. ..++.....|.-|...+.+.
T Consensus 1256 v~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence 88888888888888776542 3345677788999999999999999999876 44455555787777777665
Q ss_pred CCHHHHHHHHHHHhcCCC-----CCCCchhHHHHHHHHHhcCCcHHHHHH
Q 046631 697 GHSELAEVVAKKLLEMDT-----RNSMPGYHVLLSNIYAEEGNWENVDKV 741 (813)
Q Consensus 697 g~~~~a~~~~~~~~~~~p-----~~~~~~~~~~l~~~~~~~g~~~~A~~~ 741 (813)
++..++.+.|..-+.+.| .+ +..+.-+..+|.+.|+|+.|...
T Consensus 1330 eklmEhlk~f~~rini~k~~r~~e~--~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKVLRAAEQ--AHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHHHhcccchHhHHHHH--HHHHHHHHHHHHhcccHHHHHHH
Confidence 467778888887777655 44 56677788899999999998853
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=2.3e-15 Score=170.79 Aligned_cols=644 Identities=14% Similarity=0.077 Sum_probs=386.3
Q ss_pred hHHHHHhhc-CCcchHHHhhhcCCCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCC
Q 046631 44 SRLSKICQE-GRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRN 122 (813)
Q Consensus 44 ~~l~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~ 122 (813)
...+.-+++ |..+.+...-.+..- .--|..++..+.+. +++.|.++...+.+.. + .......+...+...+.
T Consensus 486 ~Kvi~~l~~~gq~~ki~~Y~~~~~~--~pDy~~ll~~~~~~-~P~~~~~fa~~L~~~~--~--p~~d~~~ivd~f~~~~~ 558 (1630)
T 1xi4_A 486 NKVIQCFAETGQVQKIVLYAKKVGY--TPDWIFLLRNVMRI-SPDQGQQFAQMLVQDE--E--PLADITQIVDVFMEYNL 558 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHhccCC--CccHHHHHHHHhhc-ChHHHHHHHHHHhcCC--C--CccCHHHHHHHHHhcCc
Confidence 455555666 999998888665321 23477888888765 6888999888887764 2 34567889999999999
Q ss_pred chHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhh-hhccc-----------ccCCCChhHHHHHHcccCC--
Q 046631 123 LRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMV-GLKYV-----------EVDYSKYDLVCKVFDTMRR-- 188 (813)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~-----------~~~~g~~~~a~~~~~~~~~-- 188 (813)
+.++..++-+..+.+-+.+....+.|+.+-... .+--|+.+ +.... .-+.|-+..|.+.++.+..
T Consensus 559 iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~-~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dik 637 (1630)
T 1xi4_A 559 IQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMH-APQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIK 637 (1630)
T ss_pred HHHHHHHHHHHHhCCChhhhhHhHHHHHHhhcc-chhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHH
Confidence 999999998888876444444545554443221 11111111 00000 0123778888888876542
Q ss_pred C-----CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhh-------------HHHHHHHhhCCCChhHHHHHHH
Q 046631 189 R-----NVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTIS-------------FVNVFPALSSLGDYKSADVVYG 250 (813)
Q Consensus 189 ~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------------~~~ll~~~~~~g~~~~a~~~~~ 250 (813)
+ ....=..++. |...=..+.+++.++.|...+++-|... -..+|..+-+.+.++.-.-++.
T Consensus 638 R~~~~~~~~~~~~l~~-~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~ 716 (1630)
T 1xi4_A 638 RAVVHTHLLNPEWLVN-YFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLG 716 (1630)
T ss_pred HHhhccCcCCHHHHHH-HHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHH
Confidence 1 1112222333 3333566888888888887554433222 2223333333333333333333
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCC---------------CCcc----------------h---
Q 046631 251 LLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLE---------------RNTE----------------V--- 296 (813)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~----------------~--- 296 (813)
.++. .. .|+.+....|.+.++.|++.+.+++.++-.- +|.. .
T Consensus 717 siv~--~s--~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy 792 (1630)
T 1xi4_A 717 SIVN--FS--QDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLY 792 (1630)
T ss_pred hhcc--cc--CChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHH
Confidence 2222 22 6888999999999999999999988765311 1110 0
Q ss_pred ---HHHHHHHHHhCCCchHHHHHH---------------------------------HHH---------H--HhCCCCCC
Q 046631 297 ---WNTMIGGYVQNNHPVEAIELF---------------------------------VQV---------L--ELDEIVFD 329 (813)
Q Consensus 297 ---~~~li~~~~~~g~~~~A~~~~---------------------------------~~~---------m--~~~g~~p~ 329 (813)
....|..|++.-++..+-.+. ++. + +...-..+
T Consensus 793 ~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g~~~ 872 (1630)
T 1xi4_A 793 RNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCEE 872 (1630)
T ss_pred hcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 112344444332221111111 000 0 00112345
Q ss_pred hhhHHHHHHHhcccCcchHHH----------HHHHHHHH------------h-cccchhhh--hccC-------------
Q 046631 330 DVTFLSALSAVSQLQELDLGQ----------QLHAYIIK------------N-FVALPVIV--LNAV------------- 371 (813)
Q Consensus 330 ~~t~~~ll~~~~~~~~~~~a~----------~~~~~~~~------------~-~~~~~~~~--~~~~------------- 371 (813)
..+++++...+...++-.+.. -+-....+ | .+.+-+.+ .|++
T Consensus 873 ~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d 952 (1630)
T 1xi4_A 873 PATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKD 952 (1630)
T ss_pred HHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcC
Confidence 556666666555433221110 00000000 0 00000000 0000
Q ss_pred ----------------------------CCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCC--CCCHhHHHHHHHH-
Q 046631 372 ----------------------------IERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGF--MIDSVTVTALLSA- 420 (813)
Q Consensus 372 ----------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~t~~~ll~~- 420 (813)
...|..--...+.+|...|.+.+|++++++..-.+- .-+...-+.++.+
T Consensus 953 ~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tA 1032 (1630)
T 1xi4_A 953 PELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTA 1032 (1630)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHH
Confidence 111222224456778889999999999999884321 0112222333332
Q ss_pred --------------------------HhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 046631 421 --------------------------ASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSG 474 (813)
Q Consensus 421 --------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 474 (813)
|...|.+++|..+|+... ..+. ++-..+-..+++++|.++.++..
T Consensus 1033 IkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~----~~~~---A~~VLie~i~nldrAiE~Aervn-- 1103 (1630)
T 1xi4_A 1033 IKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD----VNTS---AVQVLIEHIGNLDRAYEFAERCN-- 1103 (1630)
T ss_pred HHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC----CHHH---HHHHHHHHHhhHHHHHHHHHhcC--
Confidence 333444455555554431 0001 11111225556666666666553
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 046631 475 DRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSL 554 (813)
Q Consensus 475 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 554 (813)
+..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|+++++.+++...++.. ++..+.+.+
T Consensus 1104 --~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~L 1173 (1630)
T 1xi4_A 1104 --EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 1173 (1630)
T ss_pred --CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHH
Confidence 3567888888889999999999888653 466677888888999999999999988877765 333344458
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046631 555 IDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGL 634 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~ 634 (813)
+.+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.
T Consensus 1174 afaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHH
Confidence 88888888888644443 3556677778888888899999999998884 37888888888999999998
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 046631 635 QIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 635 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 714 (813)
+.+++. -+..+|..+..++...|++..|......+...++ .+..++..|.+.|.+++|+.+++..+.++|
T Consensus 1242 EaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~d---eLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A 1242 DGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD---ELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred HHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence 888755 2567888888888888998888887765544333 455788889999999999999999999998
Q ss_pred CCCCchhHHHHHHHHHhc--CCcHHHHHHHH
Q 046631 715 RNSMPGYHVLLSNIYAEE--GNWENVDKVRK 743 (813)
Q Consensus 715 ~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 743 (813)
.+ ...+.-|+.+|.+. ++..++.++|.
T Consensus 1312 aH--~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1312 AH--MGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred hH--hHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 87 78887787777764 34444444443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=1.4e-17 Score=174.36 Aligned_cols=327 Identities=13% Similarity=0.033 Sum_probs=226.5
Q ss_pred cchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 046631 376 VVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMY 455 (813)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (813)
+..|..+...+...|++++|+..|+++.+. .+....++..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----------------------------------~p~~~~~~~~~a~~~ 47 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG-----------------------------------DPDNYIAYYRRATVF 47 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------------------------------CcccHHHHHHHHHHH
Confidence 344555556666666666666666665553 222223334455566
Q ss_pred HhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHH-HHHHHHHHhccCCChH
Q 046631 456 AKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTP---NVV-TIASVLPACNPMGNIE 530 (813)
Q Consensus 456 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~-t~~~ll~~~~~~~~~~ 530 (813)
...|++++|...|++.....| +...|..+...|...|++++|+..|+++.+. .| +.. .+..+... .
T Consensus 48 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~ 118 (359)
T 3ieg_A 48 LAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------D 118 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------H
T ss_pred HHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------H
Confidence 666666666666666544344 5567777777788888888888888877764 34 221 11111110 0
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046631 531 LGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 531 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
....+..+...+...|++++|.+.|+++. ..+...|..+...+...|++++|+..++++.+
T Consensus 119 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 182 (359)
T 3ieg_A 119 ----------------EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182 (359)
T ss_dssp ----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ----------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01123344567778888888888888765 34677888888888888999999999988887
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHH------------HHHHHHhccCCHHHHHHHHH
Q 046631 608 CGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYC------------CVADMLGRVGKVVEAYEFVK 674 (813)
Q Consensus 608 ~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~ 674 (813)
.. +.+..++..+...+...|++++|...++++.+. .|+ ...+. .++..+.+.|++++|.+.++
T Consensus 183 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 258 (359)
T 3ieg_A 183 LK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 258 (359)
T ss_dssp TC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 52 345667888888888889999999988888755 454 33332 33777889999999999998
Q ss_pred Hh-CcCCChH----HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 675 EL-GEEGNVL----EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 675 ~~-~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
++ ...|+.+ ..+..+...+...|++++|...++++++.+|++ +..+..++.+|...|++++|.+.++++.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~- 335 (359)
T 3ieg_A 259 SVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN--VNALKDRAEAYLIEEMYDEAIQDYEAAQEH- 335 (359)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 86 3344433 245567888999999999999999999999988 889999999999999999999999998843
Q ss_pred CccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 046631 750 LRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRN 794 (813)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 794 (813)
+|....+...+.++...+.+
T Consensus 336 -------------------------~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 336 -------------------------NENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHH
T ss_pred -------------------------CCCChHHHHHHHHHHHHHHH
Confidence 35555566666666655544
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=1.1e-17 Score=175.11 Aligned_cols=280 Identities=13% Similarity=0.083 Sum_probs=197.5
Q ss_pred CCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHH
Q 046631 373 ERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLI 452 (813)
Q Consensus 373 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 452 (813)
+.+..+|..+...+...|++++|+..|+++.+.. +-+...+ ..+.
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~----------------------------------~~l~ 78 (359)
T 3ieg_A 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAAR----------------------------------LQRG 78 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH----------------------------------HHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHH----------------------------------HHHH
Confidence 3445566666677777777777777777666542 1122333 4456
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCC----ChhhHHHH------------HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 046631 453 DMYAKSGLIKTARQIFEKNDSGDR----DQATWNAM------------IAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTI 516 (813)
Q Consensus 453 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~ 516 (813)
..|...|++++|...|++.....| +...+..+ ...+...|++++|+..|+++.+.. |
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~----- 151 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--V----- 151 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C-----
Confidence 666667777777777776654455 22233333 455666666666666666665532 2
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcC
Q 046631 517 ASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHG 593 (813)
Q Consensus 517 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 593 (813)
.+...+..+...|...|++++|...++++.+ .+..+|..+...|...|
T Consensus 152 -----------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 152 -----------------------------WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHT
T ss_pred -----------------------------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 2334566667777777777777777776552 36778888888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHH-HHH------------HHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-h----hHHHH
Q 046631 594 MSERALSLFRSMKGCGIEPDAI-TFV------------AVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-T----EHYCC 655 (813)
Q Consensus 594 ~~~~A~~~~~~m~~~g~~p~~~-~~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~ 655 (813)
++++|+..+++..+. .|+.. .+. .+...+...|++++|...++++.+. .|+ . ..+..
T Consensus 203 ~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 203 DHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKER 277 (359)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHH
Confidence 888888888888874 34432 222 2356688999999999999999865 454 2 34667
Q ss_pred HHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 046631 656 VADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA 730 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 730 (813)
++.++.+.|++++|++.+++. ...|+.+.+|..++..+...|++++|...++++++++|++ +.....+..++.
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~ 351 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND--QQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHH
Confidence 889999999999999999987 4467667799999999999999999999999999999998 777777766544
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=4.1e-17 Score=168.57 Aligned_cols=284 Identities=12% Similarity=0.002 Sum_probs=188.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCC
Q 046631 414 VTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNG 492 (813)
Q Consensus 414 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~ 492 (813)
+..+...+...|+++.|..+++.+.+..+........++..+...|++++|...|+++....| +...|..+...+...|
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG 104 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh
Confidence 333333333444444444444444443333333333344444444455555444444332233 3344444555555555
Q ss_pred -ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 046631 493 -LLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVF 571 (813)
Q Consensus 493 -~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 571 (813)
++++|...|++..... | .+...+..+...|...|++++|.+.|
T Consensus 105 ~~~~~A~~~~~~a~~~~--~----------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~ 148 (330)
T 3hym_B 105 HKNEHARRYLSKATTLE--K----------------------------------TYGPAWIAYGHSFAVESEHDQAMAAY 148 (330)
T ss_dssp SCHHHHHHHHHHHHTTC--T----------------------------------TCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC--C----------------------------------ccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4555555555544321 1 13445666777777777777777777
Q ss_pred hhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--
Q 046631 572 AKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKI-- 646 (813)
Q Consensus 572 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-- 646 (813)
+++. ..+...+..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+...-
T Consensus 149 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp HHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 7665 2345677778888888999999999999988853 334567888888899999999999999888765211
Q ss_pred -----CCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCch
Q 046631 647 -----QPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPG 720 (813)
Q Consensus 647 -----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 720 (813)
......+..++.+|.+.|++++|++.++++ ...|+...+|..+...+...|++++|...++++++++|++ +.
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~ 305 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD--TF 305 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC--HH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc--hH
Confidence 223678999999999999999999999886 4456666689999999999999999999999999999998 88
Q ss_pred hHHHHHHHH-HhcCCcH
Q 046631 721 YHVLLSNIY-AEEGNWE 736 (813)
Q Consensus 721 ~~~~l~~~~-~~~g~~~ 736 (813)
.+..++.++ ...|+.+
T Consensus 306 ~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 306 SVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhCchh
Confidence 899999888 4555543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.3e-16 Score=164.67 Aligned_cols=264 Identities=10% Similarity=0.006 Sum_probs=213.5
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046631 476 RDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLI 555 (813)
Q Consensus 476 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 555 (813)
.+...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+.++|..+++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 345556666666777777777777777766643 2233344455566666777777777777766643 23566788888
Q ss_pred HHHHhcC-CHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 046631 556 DMYSKSG-VINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVD 631 (813)
Q Consensus 556 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~ 631 (813)
..|...| ++++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998763 367889999999999999999999999999853 233566777888999999999
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcC----------CChHHHHHHHHHHHHHhCCHH
Q 046631 632 EGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEE----------GNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 632 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~ 700 (813)
+|...++++. ...|+ ...+..++.++.+.|++++|...++++... +....+|..++..+...|+++
T Consensus 177 ~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999998 44674 889999999999999999999999887321 333458999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 701 LAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 701 ~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+|...++++++..|++ +..+..++.+|.+.|++++|.+.++++.+
T Consensus 254 ~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQN--ASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTTC--SHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCccc--hHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999998 99999999999999999999999998774
No 19
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=1.9e-16 Score=158.98 Aligned_cols=271 Identities=10% Similarity=0.009 Sum_probs=198.5
Q ss_pred HHhcCCHHHHHHHHhhcCCCCCCh--hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHH
Q 046631 455 YAKSGLIKTARQIFEKNDSGDRDQ--ATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELG 532 (813)
Q Consensus 455 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 532 (813)
....|++..|+..++......|+. .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344566666666666555434432 2334455666666666666655433 1234455566666666666666666
Q ss_pred HHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 046631 533 KQLHGFSIRYLLDQ-NVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIE 611 (813)
Q Consensus 533 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 611 (813)
...++.+...+..| +...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 66666666655333 455667777889999999999999998 568889999999999999999999999999985 5
Q ss_pred CCHHHH---HHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHH
Q 046631 612 PDAITF---VAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIW 686 (813)
Q Consensus 612 p~~~~~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ 686 (813)
|+.... ..++..+...|++++|..+|+++.+. .| +...++.++.++.+.|++++|++.++++ ...|+.+++|
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 665322 12334445669999999999999976 45 5889999999999999999999999995 6778888899
Q ss_pred HHHHHHHHHhCCHHH-HHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHH
Q 046631 687 GSLLGSCRLHGHSEL-AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVR 742 (813)
Q Consensus 687 ~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 742 (813)
..++..+...|+.++ +..+++++++++|++ +... +...+.+.++++..-|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~--~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSH--PFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--HHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC--hHHH----HHHHHHHHHHHHHHHc
Confidence 999999999998865 678999999999998 5543 4555556666555433
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=9.6e-15 Score=159.54 Aligned_cols=266 Identities=13% Similarity=0.014 Sum_probs=198.7
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046631 449 SYLIDMYAK----SGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQ----NGLLEEAFVAFRQMLEHNVTPNVVTIASVL 520 (813)
Q Consensus 449 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll 520 (813)
..|..+|.. .+++++|.+.|++... ..+...+..+...|.. .+++++|+..|++..+.| +...+..+.
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 226 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAE-QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLA 226 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 334455554 5667777777766442 1356667777777776 677788888887777654 344455555
Q ss_pred HHhcc----CCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCHhHHHHHHHHHHh
Q 046631 521 PACNP----MGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSK----SGVINYAANVFAKIPE-KNSVTYTTMILGYGQ 591 (813)
Q Consensus 521 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 591 (813)
..+.. .++.++|..+++...+.| +...+..+..+|.. .++.++|.+.|++..+ .+..++..|...|..
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDK 303 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 55543 677788888877777654 34556667777777 8899999999988764 467788888888888
Q ss_pred c-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc-
Q 046631 592 H-----GMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAG---LVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGR- 662 (813)
Q Consensus 592 ~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 662 (813)
. +++++|+..|++..+.| +...+..+...+...| +.++|.++|++..+. .+...+..|+.+|..
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g 376 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQG 376 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcC
Confidence 7 89999999999999865 4456667777776656 889999999998865 367888899999988
Q ss_pred ---cCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCC---CCCchhHHHHHHHHHh
Q 046631 663 ---VGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRL----HGHSELAEVVAKKLLEMDTR---NSMPGYHVLLSNIYAE 731 (813)
Q Consensus 663 ---~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~~~l~~~~~~ 731 (813)
.+++++|.+++++....++.. ++..|...+.. .++.++|...++++.+.+|+ + +.....++.++..
T Consensus 377 ~g~~~~~~~A~~~~~~A~~~~~~~-a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~--~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 377 KGVKKDEQQAAIWMRKAAEQGLSA-AQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT--ENRNITEKKLTAK 452 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH--HHHHHHHTTSCHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC--HHHHHHHHhcCHh
Confidence 899999999999987666554 89999999988 89999999999999999854 4 5566666655443
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1.4e-16 Score=162.55 Aligned_cols=280 Identities=13% Similarity=0.130 Sum_probs=128.1
Q ss_pred CChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHH
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLV 253 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 253 (813)
|++++|.+.++++..|+ +|+.+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++...
T Consensus 17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88999999999997664 999999999999999999999965 3677899999999999999999999988888
Q ss_pred HhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhH
Q 046631 254 KLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTF 333 (813)
Q Consensus 254 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~ 333 (813)
+.. +++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...| ..+ ..|
T Consensus 89 k~~----~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y-~~a---------~n~ 151 (449)
T 1b89_A 89 KKA----RESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLY-NNV---------SNF 151 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHH-HHT---------TCH
T ss_pred HhC----ccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHH-HHh---------hhH
Confidence 753 6788899999999999999999988864 67789999999999999999999999 543 478
Q ss_pred HHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhH
Q 046631 334 LSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVT 413 (813)
Q Consensus 334 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 413 (813)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|+..|+++.|...... +...+.-
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA-----------------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~ 209 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA-----------------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADE 209 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-----------------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc-----------------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhh
Confidence 88889999999999988887765 2577889999999999999988655543 2233333
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhc--CCHHHHHHHHhhcCCCCC------ChhhHHHHH
Q 046631 414 VTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKS--GLIKTARQIFEKNDSGDR------DQATWNAMI 485 (813)
Q Consensus 414 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~------~~~~~~~li 485 (813)
...++..|.+.|.++++..+++..+........+++.|.-.|++- +++.+..+.|..-....| +...|..+.
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 556788888888999988888888766643347777777777764 456666777664332222 456788888
Q ss_pred HHHHhCCChHHHHHH
Q 046631 486 AGYTQNGLLEEAFVA 500 (813)
Q Consensus 486 ~~~~~~~~~~~A~~~ 500 (813)
..|.+.++++.|...
T Consensus 290 ~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 290 FLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHhhchHHHHHHH
Confidence 888888888888764
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=5e-17 Score=165.74 Aligned_cols=409 Identities=13% Similarity=0.111 Sum_probs=194.9
Q ss_pred CCcchHHHhhhcCCCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHH
Q 046631 53 GRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCH 132 (813)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 132 (813)
|++++|.++++++..| .+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 17 ~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 17 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 8899999999999665 49999999999999999999999653 2667999999999999999999999988
Q ss_pred HHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccccCCCChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHH
Q 046631 133 FIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVEVDYSKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVR 212 (813)
Q Consensus 133 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 212 (813)
.++. .+++.+.+.++.+|.++ |+++++.++++. |+..+|+.+...|...|++++|..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Kl------------------g~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~ 143 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKT------------------NRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKL 143 (449)
T ss_dssp ------------------------------------------CHHHHTTTTTC---C----------------CTTTHHH
T ss_pred HHHh--CccchhHHHHHHHHHHh------------------CCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 8775 45578899999999999 999999988864 777899999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCC
Q 046631 213 QFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLER 292 (813)
Q Consensus 213 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 292 (813)
.|..+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .
T Consensus 144 ~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~ 205 (449)
T 1b89_A 144 LYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-V 205 (449)
T ss_dssp HHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-T
T ss_pred HHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc--------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-h
Confidence 99976 47999999999999999999999988 378999999999999999999988877755 4
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCC
Q 046631 293 NTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVI 372 (813)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 372 (813)
++.....++..|.+.|++++|+.+++..+....-.-..+|...++.+--+.+++.+..+.|..-+. .+.. + . .
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in-i~k~---~-~--~ 278 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN-IPKV---L-R--A 278 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC-HHHH---H-H--H
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc-CcHH---H-H--H
Confidence 444455789999999999999999977776664444455555555555566666666665542211 1000 0 0 0
Q ss_pred CCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHH
Q 046631 373 ERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLI 452 (813)
Q Consensus 373 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 452 (813)
-.+...|.-+.-.|.+.++++.|... |.+. .|+...-..+.....+..+.+.-.+....-+...+ ...+-|+
T Consensus 279 ~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll 350 (449)
T 1b89_A 279 AEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLL 350 (449)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHH
Confidence 02567899999999999999998774 4443 33444444445555666666655555444443222 2345566
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHH
Q 046631 453 DMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELG 532 (813)
Q Consensus 453 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 532 (813)
..+...=+...+.++|+..... |=+..|- . -.+..+...+-+.+.++.-. .-|..+...-|.+|-.-..+..|
T Consensus 351 ~~l~~~ld~~r~v~~~~~~~~l-~l~~~yl--~--~v~~~n~~~vnealn~l~ie--eed~~~lr~si~~~~nfd~~~l~ 423 (449)
T 1b89_A 351 MVLSPRLDHTRAVNYFSKVKQL-PLVKPYL--R--SVQNHNNKSVNESLNNLFIT--EEDYQALRTSIDAYDNFDNISLA 423 (449)
T ss_dssp HHHGGGCCHHHHHHHHHHTTCT-TTTHHHH--H--HHHTTCCHHHHHHHHHHHHH--TTCHHHHHHHHHHCCCSCHHHHH
T ss_pred HHHHhccCcHHHHHHHHHcCCc-HHHHHHH--H--HHHHhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHhcCcCHHHHH
Confidence 6666666667777777665421 1111111 1 11222333333333333221 23555555555555555444444
Q ss_pred HH
Q 046631 533 KQ 534 (813)
Q Consensus 533 ~~ 534 (813)
.+
T Consensus 424 ~~ 425 (449)
T 1b89_A 424 QR 425 (449)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=2.5e-14 Score=156.25 Aligned_cols=353 Identities=13% Similarity=0.034 Sum_probs=295.6
Q ss_pred CCcchHHHHHHHHHH----CCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCc
Q 046631 374 RDVVSWNTMISAFVQ----NGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASN----LRNQDVGKQTHAYLLRHGIHFE 445 (813)
Q Consensus 374 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 445 (813)
.+...+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.+.|...+....+.+. .
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~ 111 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL--P 111 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--H
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--H
Confidence 356677778888888 899999999999998875 45667777777777 8999999999999988762 2
Q ss_pred chHHHHHHHHHh----cCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHH
Q 046631 446 GMESYLIDMYAK----SGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQ----NGLLEEAFVAFRQMLEHNVTPNVVTIA 517 (813)
Q Consensus 446 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~t~~ 517 (813)
.....|..+|.. .+++++|...|++... .-+...+..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE-QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 555668888888 8899999999998653 2367788888888887 889999999999998875 566666
Q ss_pred HHHHHhcc----CCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCHhHHHHHHHH
Q 046631 518 SVLPACNP----MGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSK----SGVINYAANVFAKIPE-KNSVTYTTMILG 588 (813)
Q Consensus 518 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 588 (813)
.+...+.. .++.++|...+....+.| +...+..+..+|.. .+++++|.+.|++..+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777766 899999999999998876 56678888888886 8999999999998764 477888888888
Q ss_pred HHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 046631 589 YGQ----HGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYA-----GLVDEGLQIFDLMQQEYKIQPSTEHYCCVADM 659 (813)
Q Consensus 589 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 659 (813)
|.. .++.++|+..|++..+.| +...+..+...+... ++.++|..++++..+. + +...+..++.+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 888 899999999999999864 455666777777776 8999999999998865 3 56788889999
Q ss_pred HhccC---CHHHHHHHHHHhCcCCChHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh-
Q 046631 660 LGRVG---KVVEAYEFVKELGEEGNVLEIWGSLLGSCRL----HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE- 731 (813)
Q Consensus 660 ~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~- 731 (813)
|.+.| ++++|++++++....++.. .+..|...|.. .++.++|...++++.+.+ + +..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~-a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~--~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKA-AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--L--SAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C--HHHHHHHHHHHHHT
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--C--HHHHHHHHHHHHcC
Confidence 98867 8999999999987766655 99999999998 899999999999999865 4 7788999999998
Q ss_pred ---cCCcHHHHHHHHHHHHCCC
Q 046631 732 ---EGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 732 ---~g~~~~A~~~~~~m~~~~~ 750 (813)
.++.++|...+++..+.+.
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998774
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=2e-16 Score=166.21 Aligned_cols=284 Identities=11% Similarity=0.012 Sum_probs=208.4
Q ss_pred HHhcCCHHHHHH-HHhhcCCCCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCC
Q 046631 455 YAKSGLIKTARQ-IFEKNDSGDR-----DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGN 528 (813)
Q Consensus 455 ~~~~g~~~~A~~-~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 528 (813)
+.-.|++++|.. .|++.....| +...+..+...|.+.|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334466667776 6665433333 23456677777777777777777777777653 3345566677777777777
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHH---------------HHHHHH
Q 046631 529 IELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSVTYTT---------------MILGYG 590 (813)
Q Consensus 529 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~ 590 (813)
+++|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.. | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 777777777776654 23566777777778888888888888776652 2 2222211 133334
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCH
Q 046631 591 QHGMSERALSLFRSMKGCGIEPD---AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKV 666 (813)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 666 (813)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|...++++.+. .|+ ...+..++.++.+.|++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCH
Confidence 889999999999999984 444 678899999999999999999999999865 564 88999999999999999
Q ss_pred HHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC---------CchhHHHHHHHHHhcCCcH
Q 046631 667 VEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS---------MPGYHVLLSNIYAEEGNWE 736 (813)
Q Consensus 667 ~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---------~~~~~~~l~~~~~~~g~~~ 736 (813)
++|++.++++ ...|+...+|..++.++...|++++|...+++++++.|++. .+..+..++.+|...|+++
T Consensus 268 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 9999999986 45666667999999999999999999999999999877641 1467889999999999999
Q ss_pred HHHHHHHHH
Q 046631 737 NVDKVRKEM 745 (813)
Q Consensus 737 ~A~~~~~~m 745 (813)
+|..++++.
T Consensus 348 ~A~~~~~~~ 356 (368)
T 1fch_A 348 AYGAADARD 356 (368)
T ss_dssp GHHHHHTTC
T ss_pred hHHHhHHHH
Confidence 999987643
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=1.9e-14 Score=158.91 Aligned_cols=211 Identities=14% Similarity=0.091 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHhhCCC---C-CHhHHHHHHHHHHhc
Q 046631 531 LGKQLHGFSIRYLLDQNVFVGTSLIDMYSK-------SGVIN-------YAANVFAKIPE---K-NSVTYTTMILGYGQH 592 (813)
Q Consensus 531 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 592 (813)
.+..+++...... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4444555554431 2345556666666654 57766 78888887653 3 577888888888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHH-HhccCCHHH
Q 046631 593 GMSERALSLFRSMKGCGIEPDA--ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADM-LGRVGKVVE 668 (813)
Q Consensus 593 g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~ 668 (813)
|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|..+|++..+ ..|. ...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHHHcCChhH
Confidence 888888888888887 45543 4677777777788888888888888874 3443 3334333333 335788888
Q ss_pred HHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCch----hHHHHHHHHHhcCCcHHHHHHHH
Q 046631 669 AYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPG----YHVLLSNIYAEEGNWENVDKVRK 743 (813)
Q Consensus 669 A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~ 743 (813)
|..+|++. ...|+.+.+|..++..+.+.|+.++|..++++++...|.+ +. .+...+......|+.+.+..+.+
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~--~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP--PEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC--GGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888865 4456666688888888888888888888888888877654 43 55555666777788888888888
Q ss_pred HHHHCC
Q 046631 744 EMRERG 749 (813)
Q Consensus 744 ~m~~~~ 749 (813)
++.+.-
T Consensus 488 r~~~~~ 493 (530)
T 2ooe_A 488 RRFTAF 493 (530)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 877654
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=4.3e-14 Score=156.10 Aligned_cols=336 Identities=11% Similarity=0.040 Sum_probs=222.3
Q ss_pred CCcchHHHHHHHH-HHCCCcHHHHH----HHHHHHH-CCCCCC-HhHHHHHHHHHhc---------CCChHHHHHHHHHH
Q 046631 374 RDVVSWNTMISAF-VQNGLDDEGLM----LVYEMQK-QGFMID-SVTVTALLSAASN---------LRNQDVGKQTHAYL 437 (813)
Q Consensus 374 ~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~pd-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~ 437 (813)
|+...|...+... ...|+.++|.+ +|+.... .|..|+ ...|...+..... .|+++.+..+|+..
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5666777776533 45677777665 6666554 355543 4556665555443 57788888999888
Q ss_pred HHhCCCCc--chHHHHHHHH-------------HhcCCHHHHHHHHhh-------cCC----CCCC--------hhhHHH
Q 046631 438 LRHGIHFE--GMESYLIDMY-------------AKSGLIKTARQIFEK-------NDS----GDRD--------QATWNA 483 (813)
Q Consensus 438 ~~~~~~~~--~~~~~l~~~~-------------~~~g~~~~A~~~~~~-------~~~----~~~~--------~~~~~~ 483 (813)
++. +... .++....... .+.+++..|..+++. +.. ..|+ ...|..
T Consensus 157 l~~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 157 CVN-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp TTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred Hhc-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 883 2221 2332222211 123456677766654 211 1222 245665
Q ss_pred HHHHHHhC----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-------CCChH-------HHHHHHHHHHH
Q 046631 484 MIAGYTQN----GLL----EEAFVAFRQMLEHNVTPNVVTIASVLPACNP-------MGNIE-------LGKQLHGFSIR 541 (813)
Q Consensus 484 li~~~~~~----~~~----~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~ 541 (813)
.+...... ++. .+++.+|++..... +-+...|......+.. .|+++ .|..+++...+
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 55443332 222 37778888887752 3345566666666654 68876 78888888776
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CH-hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHH
Q 046631 542 YLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--EK-NS-VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AIT 616 (813)
Q Consensus 542 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~ 616 (813)
.-.+.+...+..++..+.+.|++++|..+|+++. .| +. ..|..++..+.+.|++++|..+|++..+. .|+ ...
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~ 392 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHV 392 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHH
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHH
Confidence 3334467788888888888999999999998776 33 33 47888888888888899999999998874 332 233
Q ss_pred HHHHHHH-HhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcC-CC----hHHHHHHH
Q 046631 617 FVAVLSA-CSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEE-GN----VLEIWGSL 689 (813)
Q Consensus 617 ~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~~l 689 (813)
|...+.. +...|+.++|..+|++..+. .|+ ...+..+++.+.+.|+.++|..+|++.... |. ...+|...
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3322222 33578899999999888865 464 788888888888899999999998887332 22 22378888
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 690 LGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 690 ~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
+.....+|+.+.+..+.+++.+..|++
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 888888899999999999888888764
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=2.1e-16 Score=165.82 Aligned_cols=263 Identities=10% Similarity=-0.037 Sum_probs=203.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44457777777788888888888888777653 3355677777777777888888888887777653 234667888888
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C-C----------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 046631 557 MYSKSGVINYAANVFAKIPE--K-N----------SVTYTTMILGYGQHGMSERALSLFRSMKGCGIE-PDAITFVAVLS 622 (813)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~--~-~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~ 622 (813)
.|.+.|++++|...|+++.+ | + ...+..+...+...|++++|+.+|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 88888888888888887763 2 1 223445688899999999999999999985322 15778999999
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 700 (813)
.+...|++++|...++++.+. .| +..++..++.+|.+.|++++|++.++++ ...|+...+|..++.++...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999865 56 4889999999999999999999999987 456776779999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCC----------chhHHHHHHHHHhcCCcHHHHHHHHH
Q 046631 701 LAEVVAKKLLEMDTRNSM----------PGYHVLLSNIYAEEGNWENVDKVRKE 744 (813)
Q Consensus 701 ~a~~~~~~~~~~~p~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (813)
+|...+++++++.|+... ...+..++.++...|+.+.+....++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998877311 56788899999999999988887654
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.9e-15 Score=164.68 Aligned_cols=368 Identities=12% Similarity=-0.015 Sum_probs=241.4
Q ss_pred CCcchHHHHHHHHHHCCCcHHHHHHHHHHHHC-----C--CCC-CHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCC---
Q 046631 374 RDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQ-----G--FMI-DSVTVTALLSAASNLRNQDVGKQTHAYLLRHGI--- 442 (813)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--- 442 (813)
.....||.|...+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...++.+.+...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999987542 1 123 346888999999999999999999988876421
Q ss_pred ---CCc--chHHHHHHHHHhc--CCHHHHHHHHhhcCCCCC-ChhhHHHHHHH---HHhCCChHHHHHHHHHHHHCCCCC
Q 046631 443 ---HFE--GMESYLIDMYAKS--GLIKTARQIFEKNDSGDR-DQATWNAMIAG---YTQNGLLEEAFVAFRQMLEHNVTP 511 (813)
Q Consensus 443 ---~~~--~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~-~~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~~~~p 511 (813)
.+. .++..+..++.+. +++++|+..|++.....| +...+..+... +...++.++|++.|++..+.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 111 3444455455544 579999999998766667 44555555444 445688889999999988753 22
Q ss_pred CHHHHHHHHHHh----ccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CHhHHHH
Q 046631 512 NVVTIASVLPAC----NPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--EK-NSVTYTT 584 (813)
Q Consensus 512 ~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~ 584 (813)
+...+..+...+ ...++.++|...++...... +.+..++..+...|.+.|++++|...|++.. .| +..+|..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 444454444333 34567788999998887764 3456778889999999999999999999876 23 5667777
Q ss_pred HHHHHHhc-------------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC
Q 046631 585 MILGYGQH-------------------GMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK 645 (813)
Q Consensus 585 li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 645 (813)
+...|... +.+++|+..+++..+.. +.+..++..+...+...|++++|...|++..+.
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-- 363 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-- 363 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--
Confidence 76665432 33567888888877742 223346777888889999999999999988754
Q ss_pred CCCCh----hHHHHHHHH-HhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCc
Q 046631 646 IQPST----EHYCCVADM-LGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMP 719 (813)
Q Consensus 646 ~~p~~----~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 719 (813)
.|+. ..+..++.. +...|++++|++.+++. ...|... .+. +....+..++++.++.+|.+ +
T Consensus 364 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~-~~~---------~~~~~l~~~~~~~l~~~p~~--~ 430 (472)
T 4g1t_A 364 -ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR-EKE---------KMKDKLQKIAKMRLSKNGAD--S 430 (472)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH-HHH---------HHHHHHHHHHHHHHHHCC-C--T
T ss_pred -CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH-HHH---------HHHHHHHHHHHHHHHhCCCC--H
Confidence 4432 223344433 34678999999988875 4455544 221 12344566778888889998 9
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEE
Q 046631 720 GYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWI 759 (813)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 759 (813)
.++..||.+|...|++++|.+.+++..+.+...+...+|+
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp THHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999999999999998876544444453
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.69 E-value=8.7e-16 Score=161.33 Aligned_cols=301 Identities=12% Similarity=0.002 Sum_probs=184.3
Q ss_pred HHHHCCCcHHHHH-HHHHHHHCCC-CC--CHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCC
Q 046631 385 AFVQNGLDDEGLM-LVYEMQKQGF-MI--DSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGL 460 (813)
Q Consensus 385 ~~~~~g~~~~A~~-~~~~m~~~g~-~p--d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (813)
.+...|++++|+. .|++...... .| +...+..+...+...|+++.|...+..+++..+....++..+...|.+.|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 3444566666666 5554433210 01 233455555555566666666666666655544433455555555556666
Q ss_pred HHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHH
Q 046631 461 IKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFS 539 (813)
Q Consensus 461 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 539 (813)
+++|...|++.....| +..+|..+...|...|++++|+..|+++.... |+........ +....
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~------~~~~~-------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA------EEGAG-------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH------HHHhh--------
Confidence 6666665555433333 44455555555555666666666665555532 2211100000 00000
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 046631 540 IRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--EK---NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA 614 (813)
Q Consensus 540 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 614 (813)
...+ ...+..+...+ ..|++++|...|+++. .| +..+|..+...|...|++++|+..|+++.+.. +.+.
T Consensus 178 ---~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 178 ---GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ---hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 0000 00111223333 8889999999998876 23 47889999999999999999999999998842 3346
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhC-cCCCh----------
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELG-EEGNV---------- 682 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~---------- 682 (813)
.++..+...+...|++++|...++++.+. .|+ ...+..++.+|.+.|++++|...++++. ..|+.
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 68888999999999999999999999865 564 8889999999999999999999998862 22222
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 046631 683 -LEIWGSLLGSCRLHGHSELAEVVAKKLL 710 (813)
Q Consensus 683 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 710 (813)
..+|..+..++...|+.++|..++++.+
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 5689999999999999999988877544
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=5.4e-15 Score=148.36 Aligned_cols=248 Identities=10% Similarity=0.034 Sum_probs=205.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 046631 485 IAGYTQNGLLEEAFVAFRQMLEHNVTPNV--VTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSG 562 (813)
Q Consensus 485 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 562 (813)
|.-....|++..|+..+++... ..|+. .....+.+++...|+++.|...++. .-.|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3455678999999999887654 34543 3556678899999999999876543 24567778889999999999
Q ss_pred CHHHHHHHHhhCC----CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046631 563 VINYAANVFAKIP----EK-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIF 637 (813)
Q Consensus 563 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 637 (813)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 577788888999999999999999988 456778888999999999999999999
Q ss_pred HHHHHhcCCCCChh---HHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 046631 638 DLMQQEYKIQPSTE---HYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMD 713 (813)
Q Consensus 638 ~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 713 (813)
+++.+. .|+.. ....++..+...|++++|+.+|+++ ...|+.+.+|+.++.++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999866 47632 1223445666779999999999998 4467777799999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCCcHH-HHHHHHHHHHCC
Q 046631 714 TRNSMPGYHVLLSNIYAEEGNWEN-VDKVRKEMRERG 749 (813)
Q Consensus 714 p~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 749 (813)
|++ +..+..++.++...|++++ +.++++++.+..
T Consensus 231 p~~--~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGH--PETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTC--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCC--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999 9999999999999999976 578999988543
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=1.6e-15 Score=156.26 Aligned_cols=256 Identities=10% Similarity=-0.016 Sum_probs=179.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 046631 449 SYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMG 527 (813)
Q Consensus 449 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 527 (813)
..+...+...|++++|...|+++....| +...|..+...+...|++++|...|+++.+.. +.
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~---------------- 87 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PK---------------- 87 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT----------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cC----------------
Confidence 3444555555555555555555433233 34455555555555555555555555555432 12
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHH--------------HH-HH
Q 046631 528 NIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSVTYTTM--------------IL-GY 589 (813)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~ 589 (813)
+...+..+...|...|++++|.+.|+++.+ | +...+..+ .. .+
T Consensus 88 -------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 88 -------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFF 148 (327)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCT
T ss_pred -------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHH
Confidence 333444455555555555555555554431 1 11122221 22 36
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHH
Q 046631 590 GQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 668 (813)
...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+. .|+ ...+..++.++.+.|++++
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHH
Confidence 77889999999999998853 335678888899999999999999999999865 464 8889999999999999999
Q ss_pred HHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC------------CCCchhHHHHHHHHHhcCCc
Q 046631 669 AYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR------------NSMPGYHVLLSNIYAEEGNW 735 (813)
Q Consensus 669 A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~~~l~~~~~~~g~~ 735 (813)
|.+.++++ ...|+...+|..+...+...|++++|...++++++..|. . +..+..++.+|.+.|++
T Consensus 225 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 225 ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT--RSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHH--HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcC--HHHHHHHHHHHHhcCCH
Confidence 99999986 455666669999999999999999999999999999988 5 77888999999999999
Q ss_pred HHHHHHHHHHH
Q 046631 736 ENVDKVRKEMR 746 (813)
Q Consensus 736 ~~A~~~~~~m~ 746 (813)
++|..++++..
T Consensus 303 ~~A~~~~~~~l 313 (327)
T 3cv0_A 303 DLVELTYAQNV 313 (327)
T ss_dssp HHHHHHTTCCS
T ss_pred HHHHHHHHHHH
Confidence 99999886543
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.67 E-value=3.9e-15 Score=156.11 Aligned_cols=233 Identities=8% Similarity=-0.050 Sum_probs=196.8
Q ss_pred CHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHH
Q 046631 512 NVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILG 588 (813)
Q Consensus 512 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 588 (813)
+...+..+...+...|++++|..+++.+.+.. +.+..++..+..+|.+.|++++|...|+++. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788888999999999999999998875 3467889999999999999999999999876 3468899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 046631 589 YGQHGMSERALSLFRSMKGCGIEPDAI-----------TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVA 657 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 657 (813)
|...|++++|+..|+++.+. .|+.. .+..+...+...|++++|..+++++.+...-.++..++..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999883 44432 233457788999999999999999997622222588999999
Q ss_pred HHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcH
Q 046631 658 DMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWE 736 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~ 736 (813)
.+|.+.|++++|++.++++ ...|+...+|..++.++...|++++|+..+++++++.|++ +..+..++.+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF--IRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHCCCHH
Confidence 9999999999999999987 4567667799999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHHHCC
Q 046631 737 NVDKVRKEMRERG 749 (813)
Q Consensus 737 ~A~~~~~~m~~~~ 749 (813)
+|...++++.+..
T Consensus 299 ~A~~~~~~al~~~ 311 (365)
T 4eqf_A 299 EAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998754
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=9.9e-14 Score=151.11 Aligned_cols=378 Identities=12% Similarity=0.000 Sum_probs=241.0
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCC
Q 046631 294 TEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIE 373 (813)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 373 (813)
+..||.|...+...|++++|++.|++.+.. +.... + . ....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~-----------------------------~~~~~-~-~--------~~~~ 91 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEEL-----------------------------IQQEH-A-D--------QAEI 91 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------HHHHS-G-G--------GCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------------------------HHhcC-c-c--------ccch
Confidence 456777777777788888888777443321 11000 0 0 0012
Q ss_pred CCcchHHHHHHHHHHCCCcHHHHHHHHHHHHC-----C-CCC-CHhHHHHHHHHHh--cCCChHHHHHHHHHHHHhCCCC
Q 046631 374 RDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQ-----G-FMI-DSVTVTALLSAAS--NLRNQDVGKQTHAYLLRHGIHF 444 (813)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-d~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~ 444 (813)
....+|+.+...|...|++++|...+++..+. + ..+ ...++.....++. ..++++.|...|+.+++..+..
T Consensus 92 ~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~ 171 (472)
T 4g1t_A 92 RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171 (472)
T ss_dssp TTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC
Confidence 34578999999999999999999999987652 1 112 2345555444443 4567999999999999998776
Q ss_pred cchHHHHHHH---HHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHH
Q 046631 445 EGMESYLIDM---YAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQ----NGLLEEAFVAFRQMLEHNVTPNVVTI 516 (813)
Q Consensus 445 ~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~t~ 516 (813)
......+... +...++.++|++.|++.....| +...+..+...+.. .+++++|...+++..... +.+...+
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 6555544444 4456778889888887654455 55666666555544 467889999999988753 4456678
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-------------------CCHHHHHHHHhhCC--
Q 046631 517 ASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKS-------------------GVINYAANVFAKIP-- 575 (813)
Q Consensus 517 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~~~-- 575 (813)
..+...+...|+++.|...+....+.. +.+..++..+...|... +..+.|...|++..
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 888999999999999999999988764 23455666666665432 23566777777654
Q ss_pred -CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHHHHhcCCCCChh
Q 046631 576 -EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI--TFVAVLS-ACSYAGLVDEGLQIFDLMQQEYKIQPSTE 651 (813)
Q Consensus 576 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 651 (813)
..+..+|..+...|...|++++|++.|++.++....+... .+..+.. ...+.|+.++|+..|++.. .+.|+..
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~ 406 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSR 406 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCH
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccH
Confidence 3456788999999999999999999999999854333222 2333332 3457899999999999988 4567643
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH-hCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKE-LGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLS 726 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~ 726 (813)
..... .+.+.+++++ +..+|+.+.+|..|+..+...|++++|++.++++++++|.+ |.....+|
T Consensus 407 ~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~--p~a~~~~G 471 (472)
T 4g1t_A 407 EKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI--PSASSWNG 471 (472)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------------------
T ss_pred HHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CcHhhcCC
Confidence 32222 2333444443 35567777799999999999999999999999999999988 77665554
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=5e-14 Score=145.02 Aligned_cols=277 Identities=10% Similarity=-0.017 Sum_probs=174.7
Q ss_pred CcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 046631 375 DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDM 454 (813)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 454 (813)
+...|..+...+...|++++|..+|+++.+.. +.+..++.. +...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~----------------------------------l~~~ 64 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRS----------------------------------LGLT 64 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH----------------------------------HHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHH----------------------------------HHHH
Confidence 45567777788888888888888888877653 223344444 4444
Q ss_pred HHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCChHHH
Q 046631 455 YAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVV-TIASVLPACNPMGNIELG 532 (813)
Q Consensus 455 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a 532 (813)
|...|++++|...|++.....| +...|..+...|...|++++|+..|+++.... |+.. .+..+...+
T Consensus 65 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~--------- 133 (327)
T 3cv0_A 65 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD--------- 133 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC-----------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH---------
Confidence 5555555555555555433334 55677777778888888888888888877642 3221 111110000
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHH--HHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046631 533 KQLHGFSIRYLLDQNVFVGTSLID--MYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
++......+.. .+...|++++|.+.++++. ..+...+..+...|...|++++|+..++++.+
T Consensus 134 -------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 200 (327)
T 3cv0_A 134 -------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE 200 (327)
T ss_dssp -------------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 00001111211 2555666666666666554 23566777777777777888888888887776
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCC----
Q 046631 608 CGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGN---- 681 (813)
Q Consensus 608 ~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---- 681 (813)
.. +.+..++..+...+...|++++|...++++.+. .| +...+..++.+|.+.|++++|.+.++++ ...|.
T Consensus 201 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 276 (327)
T 3cv0_A 201 LR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-
T ss_pred hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccc
Confidence 42 234557777777788888888888888877754 45 3677778888888888888888887775 23333
Q ss_pred --------hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 046631 682 --------VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 682 --------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 714 (813)
...+|..+..++...|+.++|..+++++++..|
T Consensus 277 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 277 TGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp ----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred cccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 455788888888888888888888776655433
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=3.3e-16 Score=172.24 Aligned_cols=150 Identities=11% Similarity=0.014 Sum_probs=108.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 046631 478 QATWNAMIAGYTQNGLLEEAFVAFRQMLE---HNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSL 554 (813)
Q Consensus 478 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 554 (813)
..+||+||++|++.|+.++|.++|.+|.+ .|+.||.+||++||.+|++.|++++|.++|++|.+.|+.||..+||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35788888999998988888888877654 477888888888888888888888888888888877777766666555
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046631 555 IDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGM-SERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEG 633 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a 633 (813)
|++++ +.|+ .++|.++|++|.+.|+.||.+||++++.++.+.+ .
T Consensus 207 I~glc-------------------------------K~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----v 251 (1134)
T 3spa_A 207 LQCMG-------------------------------RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----V 251 (1134)
T ss_dssp HHHHH-------------------------------HHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----H
T ss_pred HHHHH-------------------------------hCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----H
Confidence 55544 4444 3677888899999999999999998887665543 3
Q ss_pred HHHHHHHHHhcCCCCC------hhHHHHHHHHHhccC
Q 046631 634 LQIFDLMQQEYKIQPS------TEHYCCVADMLGRVG 664 (813)
Q Consensus 634 ~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g 664 (813)
++.++++.. ++.|+ ..+...|.+.|.+.+
T Consensus 252 L~~Vrkv~P--~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 252 LKAVHKVKP--TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHGGGCC--CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHHhCc--ccCCCCCCcccccchHHHHHHHccCC
Confidence 344444432 34443 445556778888766
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=2.6e-14 Score=136.84 Aligned_cols=194 Identities=14% Similarity=0.079 Sum_probs=158.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 046631 545 DQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAV 620 (813)
Q Consensus 545 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 620 (813)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45667788888999999999999999998763 36889999999999999999999999999984 554 5578888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHH
Q 046631 621 LSACSYA-----------GLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWG 687 (813)
Q Consensus 621 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~ 687 (813)
...+... |++++|+..+++..+. .|+ ...+..++.+|...|++++|+..+++. ... +.+.+|.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence 8899999 9999999999999855 785 889999999999999999999999987 333 5556999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
.++.++...|++++|+..++++++++|++ +..+..++.++...|++++|.+.+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKD--LDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999 9999999999999999999999987654
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.9e-14 Score=139.45 Aligned_cols=219 Identities=10% Similarity=0.023 Sum_probs=170.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 046631 479 ATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMY 558 (813)
Q Consensus 479 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 558 (813)
..|..+...+...|++++|+..|++..+.. .+... +..+..+|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~-----------------------------------~~~~~~~~ 48 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITY-----------------------------------LNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHH-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHH-----------------------------------HHHHHHHH
Confidence 355666666667777777777776666654 34444 44555555
Q ss_pred HhcCCHHHHHHHHhhCCC--C----C----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 046631 559 SKSGVINYAANVFAKIPE--K----N----SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAG 628 (813)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 628 (813)
...|++++|.+.|++..+ | + ..+|..+...|...|++++|+..|+++.+ +.|+. ..+...|
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~ 119 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLR 119 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHh
Confidence 555555555555555442 1 1 56788888888999999999999999888 45653 3456678
Q ss_pred cHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHH
Q 046631 629 LVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVA 706 (813)
Q Consensus 629 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 706 (813)
++++|...++.+.. ..|+ ...+..++.++...|++++|++.++++ ...|..+.+|..++..+...|++++|...+
T Consensus 120 ~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 120 NAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999998874 3564 788899999999999999999999987 455666668999999999999999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 707 KKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 707 ~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+++++..|++ +..+..++.+|.+.|++++|...+++..+.
T Consensus 197 ~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 197 NKAIEKDPNF--VRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999998 899999999999999999999999998864
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=7.3e-16 Score=169.52 Aligned_cols=125 Identities=12% Similarity=0.151 Sum_probs=111.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP-------EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVA 619 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 619 (813)
-..+||+||++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45589999999999999999999997653 58999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCc-HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHH
Q 046631 620 VLSACSYAGL-VDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEF 672 (813)
Q Consensus 620 ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 672 (813)
+|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++...++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999997 57899999999999 9999999999998877776555554444
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2e-13 Score=134.98 Aligned_cols=236 Identities=13% Similarity=0.030 Sum_probs=172.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHh
Q 046631 446 GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNV--TPNVVTIASVLPAC 523 (813)
Q Consensus 446 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~ 523 (813)
..+..+...+...|++++|...|++......+...|..+...|...|++++|+..|++..+... .++...
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-------- 77 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV-------- 77 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH--------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH--------
Confidence 4567788999999999999999998543336778999999999999999999999999876421 112100
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhcCChHHHHHH
Q 046631 524 NPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--KNSVTYTTMILGYGQHGMSERALSL 601 (813)
Q Consensus 524 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 601 (813)
...++..+...|.+.|++++|...|+++.+ ++ ...+...|++++|+..
T Consensus 78 -----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 78 -----------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKK 127 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHH
Confidence 023345555566666666666666665542 23 2345566778888888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-Cc
Q 046631 602 FRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GE 678 (813)
Q Consensus 602 ~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 678 (813)
++++... .|+ ...+..+...+...|++++|...++++.+. .| +...+..++.+|.+.|++++|+..++++ ..
T Consensus 128 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 128 AEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888773 443 346777777888888888888888888754 45 4778888888888888999888888876 44
Q ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC------CCCCCchhHHHHH
Q 046631 679 EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMD------TRNSMPGYHVLLS 726 (813)
Q Consensus 679 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~~~l~ 726 (813)
.|+.+.+|..+...+...|++++|...+++++++. |.+ ......+.
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~--~~~~~~l~ 254 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA--REIDQLYY 254 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH--HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCch--HHHHHHHH
Confidence 56666688888889999999999999999988888 665 55444443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=6.4e-13 Score=132.83 Aligned_cols=240 Identities=10% Similarity=-0.078 Sum_probs=166.7
Q ss_pred CChHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 046631 492 GLLEEAFVAFRQMLEHNVT--P-NVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAA 568 (813)
Q Consensus 492 ~~~~~A~~~~~~m~~~~~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 568 (813)
|++++|+..|+++.+.... | +...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 3444444444444443110 1 12334444444444555555555554444432 224556777778888888888888
Q ss_pred HHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC
Q 046631 569 NVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK 645 (813)
Q Consensus 569 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 645 (813)
+.|+++. ..+..+|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...+++....
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-- 173 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-- 173 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 8888766 23678899999999999999999999999998 4566665555666667789999999999888765
Q ss_pred CCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCC-----hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCch
Q 046631 646 IQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGN-----VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPG 720 (813)
Q Consensus 646 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 720 (813)
.|+......++..+...++.++|++.+++...... ...+|..++..+...|++++|...++++++.+|.+ ..
T Consensus 174 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~ 250 (275)
T 1xnf_A 174 -SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FV 250 (275)
T ss_dssp -SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CH
T ss_pred -CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HH
Confidence 34323333477888888899999999988743322 24589999999999999999999999999999976 43
Q ss_pred hHHHHHHHHHhcCCcHHHHHHH
Q 046631 721 YHVLLSNIYAEEGNWENVDKVR 742 (813)
Q Consensus 721 ~~~~l~~~~~~~g~~~~A~~~~ 742 (813)
. .+.++...|++++|.+.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 3 356788888999888766
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=9e-13 Score=129.83 Aligned_cols=198 Identities=10% Similarity=-0.051 Sum_probs=166.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046631 548 VFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSAC 624 (813)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 624 (813)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4556777788888888888888888765 3467788889999999999999999999988853 33566788888889
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHH
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELA 702 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a 702 (813)
...|++++|..+++++.+. +..|+ ...+..++.+|.+.|++++|.+.++++ ...|....+|..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999988752 35664 778888999999999999999999886 44555566889999999999999999
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 703 EVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 703 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
...++++++..|.+ ...+..++.+|...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQN--ARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999988 8888899999999999999999999998653
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=5.8e-13 Score=132.93 Aligned_cols=244 Identities=13% Similarity=0.022 Sum_probs=154.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 046631 449 SYLIDMYAKSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMG 527 (813)
Q Consensus 449 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 527 (813)
......+...|++++|...|++.....| +...|..+...|...|++++|+..|++..+....|+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------- 72 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA-------------- 72 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC--------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH--------------
Confidence 3455666677777777777776554444 3446666667777777777777777776663211111
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 046631 528 NIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRS 604 (813)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 604 (813)
....+..+...|...|++++|.+.|++.. ..+..+|..+...|...|++++|+..|++
T Consensus 73 -------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 73 -------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred -------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 11234555556666666666666666554 23456677777777777777777777777
Q ss_pred HHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCC---HHHHHHHHHHhC--
Q 046631 605 MKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGK---VVEAYEFVKELG-- 677 (813)
Q Consensus 605 m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-- 677 (813)
..+. .|+ ...+..+...+...+++++|...|+++.+. .|+ ...+..++.++...|+ +++|...++++.
T Consensus 134 al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 134 QIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp GCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred Hhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 7663 333 334555552444455788888888777754 454 6667777777777776 666666666541
Q ss_pred --cCCC-----hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhc
Q 046631 678 --EEGN-----VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEE 732 (813)
Q Consensus 678 --~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 732 (813)
..|+ ...+|..+...+...|++++|...++++++++|++ +.....++.+....
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN--KKAIDGLKMKLEHH 268 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHC------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH--HHHHHHhhhhhccc
Confidence 1232 22478889999999999999999999999999998 77776665554433
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=1.2e-12 Score=135.66 Aligned_cols=244 Identities=14% Similarity=0.024 Sum_probs=187.0
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCC-hHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 478 QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGN-IELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 478 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
...|+.+...+.+.|++++|+..|++.+... +-+...|..+..++...|+ +++|...++.+++... .+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 3456667777777777777777777777642 2234456666666666775 7777777777766542 25667888888
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhc-cCcHH
Q 046631 557 MYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSY-AGLVD 631 (813)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~-~g~~~ 631 (813)
+|.+.|++++|+..|+++. ..+..+|..+..++...|++++|+..|+++++. .| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 8889999999999998876 347889999999999999999999999999984 45 45678888888887 56656
Q ss_pred HH-----HHHHHHHHHhcCCCCC-hhHHHHHHHHHhccC--CHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhC------
Q 046631 632 EG-----LQIFDLMQQEYKIQPS-TEHYCCVADMLGRVG--KVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHG------ 697 (813)
Q Consensus 632 ~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 697 (813)
+| +..+++.++. .|+ ...|..+..+|.+.| ++++|++.++++...|+...++..++..+.+.|
T Consensus 253 eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 5778888754 675 788889999999888 689999999888667777768888998888874
Q ss_pred ---CHHHHHHHHHHH-hcCCCCCCCchhHHHHHHHHH
Q 046631 698 ---HSELAEVVAKKL-LEMDTRNSMPGYHVLLSNIYA 730 (813)
Q Consensus 698 ---~~~~a~~~~~~~-~~~~p~~~~~~~~~~l~~~~~ 730 (813)
..++|+.+++++ ++++|.. ..+|..++..+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r--~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIR--KEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGG--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHH
Confidence 258899999999 8999988 788877766554
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=1e-11 Score=123.84 Aligned_cols=224 Identities=11% Similarity=-0.029 Sum_probs=166.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
+..++..+...|...|++++|+..|++..+.+ +.. .+..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~-----------------------------------a~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENS-----------------------------------GCFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHH-----------------------------------HHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHH-----------------------------------HHHHHHH
Confidence 55667777777777788888888887776622 222 3344445
Q ss_pred HHHh----cCCHHHHHHHHhhCCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-
Q 046631 557 MYSK----SGVINYAANVFAKIPE-KNSVTYTTMILGYGQ----HGMSERALSLFRSMKGCGIEPDAITFVAVLSACSY- 626 (813)
Q Consensus 557 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~- 626 (813)
.|.. .|++++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 5555 6666666666665542 356677777777777 788888888888888764 56677777777777
Q ss_pred ---cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHH----
Q 046631 627 ---AGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGR----VGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRL---- 695 (813)
Q Consensus 627 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~---- 695 (813)
.+++++|..+|++..+. + +...+..++.+|.. .+++++|++.+++....++.. .+..+...+..
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSP-GCFNAGNMYHHGEGA 198 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHTCSS
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHcCCCC
Confidence 88888888888888764 3 56677778888877 888888888888876555544 78888888888
Q ss_pred hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh----cCCcHHHHHHHHHHHHCCC
Q 046631 696 HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE----EGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 696 ~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 750 (813)
.+++++|...++++++.+| +..+..++.+|.. .|++++|.+.+++..+.|.
T Consensus 199 ~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHHHhCCC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8899999999998888755 4667788888888 8899999999988887664
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=2.5e-12 Score=124.05 Aligned_cols=198 Identities=14% Similarity=0.026 Sum_probs=164.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSA 623 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 623 (813)
+...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34567777888888899999988888765 3467788889999999999999999999988843 3356678888888
Q ss_pred Hhcc-CcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHH
Q 046631 624 CSYA-GLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 624 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 700 (813)
+... |++++|..+++++.+. +..|+ ...+..++.++...|++++|++.++++ ...|....+|..++..+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 9999 9999999999998862 34554 778888999999999999999999886 445655668899999999999999
Q ss_pred HHHHHHHHHhcCCC-CCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 701 LAEVVAKKLLEMDT-RNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 701 ~a~~~~~~~~~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+|...++++++..| .+ +..+..++.++...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQ--ADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999998 77 778888888899999999999999988754
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.3e-11 Score=123.23 Aligned_cols=224 Identities=16% Similarity=0.005 Sum_probs=170.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046631 446 GMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQ----NGLLEEAFVAFRQMLEHNVTPNVVTIASVLP 521 (813)
Q Consensus 446 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 521 (813)
.....+...|...|++++|...|++... ..+...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~--- 79 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL--- 79 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH---
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH---
Confidence 4566788899999999999999998763 2366788889999999 999999999999988764 3444433
Q ss_pred HhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCHhHHHHHHHHHHh----c
Q 046631 522 ACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSK----SGVINYAANVFAKIPE-KNSVTYTTMILGYGQ----H 592 (813)
Q Consensus 522 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~ 592 (813)
+...|.. .+++++|.+.|++..+ .+..++..+...|.. .
T Consensus 80 --------------------------------lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 80 --------------------------------LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp --------------------------------HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred --------------------------------HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcc
Confidence 3444444 5555555555554442 355667777777777 7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cC
Q 046631 593 GMSERALSLFRSMKGCGIEPDAITFVAVLSACSY----AGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGR----VG 664 (813)
Q Consensus 593 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 664 (813)
+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. + +...+..++.+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCc
Confidence 88888888888888765 45566677777776 88899999998888764 2 46777888888888 89
Q ss_pred CHHHHHHHHHHhCcCCChHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCCC
Q 046631 665 KVVEAYEFVKELGEEGNVLEIWGSLLGSCRL----HGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 665 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~ 716 (813)
++++|++.+++....++.. ++..+...+.. .++.++|...++++++.+|.+
T Consensus 201 ~~~~A~~~~~~a~~~~~~~-a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 201 NFKEALARYSKACELENGG-GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhCCCHH-HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 9999999998876555544 88888888888 889999999999999888764
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=3.7e-12 Score=132.05 Aligned_cols=224 Identities=13% Similarity=0.016 Sum_probs=192.7
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhhCC---CCCHhHHHHHHHHH
Q 046631 514 VTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGV-INYAANVFAKIP---EKNSVTYTTMILGY 589 (813)
Q Consensus 514 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~ 589 (813)
..|..+...+...|++++|...++.+++.. +-+..+|+.+..+|.+.|+ +++|+..|+++. ..+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356667777888999999999999999865 3367788999999999997 999999999887 34788999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhc-cCCH
Q 046631 590 GQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGR-VGKV 666 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~ 666 (813)
...|++++|+..|+++++ +.| +...|..+..++...|++++|+..++++++. .|+ ...|+.++.+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999 455 4568889999999999999999999999965 675 8999999999999 6666
Q ss_pred HHH-----HHHHHHh-CcCCChHHHHHHHHHHHHHhC--CHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcC-----
Q 046631 667 VEA-----YEFVKEL-GEEGNVLEIWGSLLGSCRLHG--HSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEG----- 733 (813)
Q Consensus 667 ~~A-----~~~~~~~-~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g----- 733 (813)
++| ++.+++. ...|+...+|..+...+...| ++++|...++++ +.+|++ +..+..++++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~--~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS--PYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC--HHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCC--HHHHHHHHHHHHHHhccccc
Confidence 777 4666664 677877779999999999988 689999999998 888888 899999999999975
Q ss_pred ----CcHHHHHHHHHH-H
Q 046631 734 ----NWENVDKVRKEM-R 746 (813)
Q Consensus 734 ----~~~~A~~~~~~m-~ 746 (813)
..++|.++++++ .
T Consensus 329 ~~~~~~~~A~~~~~~l~~ 346 (382)
T 2h6f_A 329 NKEDILNKALELCEILAK 346 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 258999999998 5
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=1e-12 Score=128.64 Aligned_cols=196 Identities=14% Similarity=0.101 Sum_probs=151.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSA 623 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 623 (813)
....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445667777788888999999888887753 367888889999999999999999999998853 3356678888889
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHH
Q 046631 624 CSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSEL 701 (813)
Q Consensus 624 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 701 (813)
+...|++++|..+++++.+. .| +...+..++.++.+.|++++|.+.++++ ...|....+|..++..+...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999998865 45 5788889999999999999999999886 4456556689999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
|+..++++++..|.+ +..+..++.+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGH--ADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccc--HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999988 888999999999999999999999999864
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=3.8e-12 Score=118.34 Aligned_cols=165 Identities=12% Similarity=0.087 Sum_probs=140.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 046631 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCC 655 (813)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 655 (813)
++..|..+...|...|++++|++.|++.++. .|+ ...+..+...+...|++++|...+...... .|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 5667888888999999999999999998884 454 457888888889999999999999888754 554 777888
Q ss_pred HHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 656 VADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
++..+...+++++|.+.+++. ...|....+|..++..+...|++++|+..++++++++|.+ +..+..++.+|.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF--IRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh--hhHHHHHHHHHHHCCC
Confidence 888999999999999988876 4566666689999999999999999999999999999998 8899999999999999
Q ss_pred cHHHHHHHHHHHHCC
Q 046631 735 WENVDKVRKEMRERG 749 (813)
Q Consensus 735 ~~~A~~~~~~m~~~~ 749 (813)
+++|.+.+++..+..
T Consensus 157 ~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 157 RDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999988654
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.46 E-value=1.1e-11 Score=123.56 Aligned_cols=245 Identities=10% Similarity=-0.032 Sum_probs=191.2
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCCh----hhHHHHHHH
Q 046631 412 VTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQ----ATWNAMIAG 487 (813)
Q Consensus 412 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~ 487 (813)
..+......+...|+++.|...+..+++..+....++..+...|...|++++|...|++.....++. ..|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455666788899999999999999999887766788889999999999999999999866522232 348899999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 046631 488 YTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYA 567 (813)
Q Consensus 488 ~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 567 (813)
|...|++++|+..|++..+.. |+ +..++..+...|...|++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~--~~----------------------------------~~~~~~~l~~~~~~~~~~~~A 127 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD--TT----------------------------------RLDMYGQIGSYFYNKGNFPLA 127 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TT----------------------------------CTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC--cc----------------------------------cHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999988742 22 234577888889999999999
Q ss_pred HHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCc---HHHHHHHHHHH
Q 046631 568 ANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGL---VDEGLQIFDLM 640 (813)
Q Consensus 568 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~---~~~a~~~~~~~ 640 (813)
.+.|++..+ .+...|..+...+...+++++|+..|+++.+. .|+ ...+..+...+...|+ +++|...++++
T Consensus 128 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 999998874 36777888873444456999999999999984 455 5677777778887787 88899988888
Q ss_pred HHhcCCCCC------hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHH
Q 046631 641 QQEYKIQPS------TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCR 694 (813)
Q Consensus 641 ~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~ 694 (813)
.+...-.|+ ...|..++..|.+.|++++|.+.++++ ...|+.+.++..+.....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 766433344 267888999999999999999999987 566776656666554443
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=4e-12 Score=136.38 Aligned_cols=344 Identities=10% Similarity=-0.004 Sum_probs=226.9
Q ss_pred HHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCcchHHHHHHHHHhc
Q 046631 382 MISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQ---DVGKQTHAYLLRHGIHFEGMESYLIDMYAKS 458 (813)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (813)
+...+.+.|++++|+++|++..+.|. ++ .+..+...+...|+. ++|...+....+. .......|..++...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CT--GGGTCC-------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhC
Confidence 56667889999999999999988763 32 333344445556777 8999999888866 224455566645555
Q ss_pred C-----CHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChH
Q 046631 459 G-----LIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLE---EAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIE 530 (813)
Q Consensus 459 g-----~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~---~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 530 (813)
+ +.++|...|++.... -+...+..|...|...+..+ ++.+.+......|. ......+...+...+.++
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFAN-GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHT-TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 4 788999999986532 23447778888888776544 45555555555543 334444555555556554
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCCC---CCHhHHHHHHHHHHhc----CChHHHHH
Q 046631 531 LGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSG---VINYAANVFAKIPE---KNSVTYTTMILGYGQH----GMSERALS 600 (813)
Q Consensus 531 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~ 600 (813)
.+......+.+.-...++..+..|..+|.+.| +.++|.+.|++..+ ++...+..|...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44444333333323334458888999999999 89999999987752 3455557777777655 78999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccC-----CHHHHHHH
Q 046631 601 LFRSMKGCGIEPDAITFVAVLSA-C--SYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVG-----KVVEAYEF 672 (813)
Q Consensus 601 ~~~~m~~~g~~p~~~~~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~ 672 (813)
.|++.. .| +...+..|... + ...+++++|..+|++..+. | +...+..|+.+|. .| ++++|+++
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 999987 33 34455555555 3 4689999999999998865 4 6778888888887 55 99999999
Q ss_pred HHHhCcCCChHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh----cCCcHHHHHHHHH
Q 046631 673 VKELGEEGNVLEIWGSLLGSCRL----HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE----EGNWENVDKVRKE 744 (813)
Q Consensus 673 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 744 (813)
|++.. .++. ..+..|...|.. ..|.++|...++++.+.+ + +.....|+.+|.. ..+.++|..++++
T Consensus 310 ~~~Aa-~g~~-~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 310 FEKAV-GREV-AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--Q--NSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHTTT-TTCH-HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--C--TTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHh-CCCH-HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--h--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99998 4444 488888877776 338999999999998754 3 5677888888875 4588999999999
Q ss_pred HHHCCC
Q 046631 745 MRERGL 750 (813)
Q Consensus 745 m~~~~~ 750 (813)
..+.|.
T Consensus 384 A~~~g~ 389 (452)
T 3e4b_A 384 AKAQDT 389 (452)
T ss_dssp HHTTCC
T ss_pred HHHCCC
Confidence 998775
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=1.6e-11 Score=120.78 Aligned_cols=205 Identities=14% Similarity=0.090 Sum_probs=157.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 046631 478 QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDM 557 (813)
Q Consensus 478 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 557 (813)
...|..+...|...|++++|+..|+++.+.. |+ +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~----------------------------------~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PS----------------------------------SADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC----------------------------------hHHHHHHHHHH
Confidence 4567788888888888888888888877642 22 22344555556
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 046631 558 YSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEG 633 (813)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a 633 (813)
|...|++++|.+.|+++. ..+...|..+...|...|++++|+++++++.+.+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666554 23567778888888888888888888888887434554 44677788888899999999
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 634 LQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 634 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
..+++++.+. .| +...+..++.+|.+.|++++|...++++ ...|.....+..+...+...|+.++|...++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999988865 45 4788889999999999999999999887 44556666888889999999999999999999999
Q ss_pred CCCCCCCchhHH
Q 046631 712 MDTRNSMPGYHV 723 (813)
Q Consensus 712 ~~p~~~~~~~~~ 723 (813)
..|++ +....
T Consensus 238 ~~p~~--~~~~~ 247 (252)
T 2ho1_A 238 LYPGS--LEYQE 247 (252)
T ss_dssp HCTTS--HHHHH
T ss_pred HCCCC--HHHHH
Confidence 99987 55443
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.43 E-value=9.1e-12 Score=119.04 Aligned_cols=109 Identities=17% Similarity=0.098 Sum_probs=45.2
Q ss_pred CCHHHHHHHHhhCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046631 562 GVINYAANVFAKIP--EK-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFD 638 (813)
Q Consensus 562 g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 638 (813)
|++++|...|++.. .| +...|..+...|...|++++|+..|++.++.. .+...+..+..++...|++++|...|+
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444433 12 34444444455555555555555555554433 344444444445555555555555555
Q ss_pred HHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHH
Q 046631 639 LMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKE 675 (813)
Q Consensus 639 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 675 (813)
++.+. .|+ ...+..++.++.+.|++++|++.+++
T Consensus 176 ~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 176 KALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44432 342 44444445555555555555544443
No 54
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.43 E-value=4.7e-11 Score=128.01 Aligned_cols=311 Identities=12% Similarity=0.041 Sum_probs=217.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCH---HHHHHHHhhcCCCCCChhhHHHHHHHHHhCC-
Q 046631 417 LLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLI---KTARQIFEKNDSGDRDQATWNAMIAGYTQNG- 492 (813)
Q Consensus 417 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~- 492 (813)
+...+.+.|++++|...+..+.+.|.. .....|..+|...|+. ++|...|++.... +...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~--~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYS--EAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC--TGGGTCC------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCC
Confidence 445566789999999999999888643 3333466666777888 9999999988743 6677777777566665
Q ss_pred ----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCCh---HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---
Q 046631 493 ----LLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNI---ELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSG--- 562 (813)
Q Consensus 493 ----~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 562 (813)
++++|+..|++..+.|... .+..+...+...+.. ..+...+......| +......|...|...+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 7889999999999977443 333444444443332 34555555555555 3456777888888877
Q ss_pred -CHHHHHHHHhhCCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----CcHHHHH
Q 046631 563 -VINYAANVFAKIPEKNSVTYTTMILGYGQHG---MSERALSLFRSMKGCGIEPDAITFVAVLSACSYA----GLVDEGL 634 (813)
Q Consensus 563 -~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~----g~~~~a~ 634 (813)
..+.+..+++.....+..++..|...|...| +.++|++.|++..+.| .++...+..|...|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 4556666777777777779999999999999 9999999999999987 55555556666677554 7999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHH-H--hccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhC-----CHHHHHHHH
Q 046631 635 QIFDLMQQEYKIQPSTEHYCCVADM-L--GRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHG-----HSELAEVVA 706 (813)
Q Consensus 635 ~~~~~~~~~~~~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~ 706 (813)
.+|++.. . -+...+..|+.+ | ...|++++|++++++....++.. .+..|...|. .| |.++|...+
T Consensus 238 ~~~~~aa-~----g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~-A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 238 ALLEKIA-P----GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPR-AELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHHG-G----GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHHc-C----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 9998875 2 257778888887 4 56899999999999987766665 8888888887 66 999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHh----cCCcHHHHHHHHHHHHCCC
Q 046631 707 KKLLEMDTRNSMPGYHVLLSNIYAE----EGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 707 ~~~~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 750 (813)
+++. +.+ +..+..|+.+|.. ..+.++|.+++++..+.|.
T Consensus 311 ~~Aa---~g~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 311 EKAV---GRE--VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HTTT---TTC--HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHh---CCC--HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 9998 676 8899999998887 3499999999999988764
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=2.9e-12 Score=125.28 Aligned_cols=211 Identities=13% Similarity=0.054 Sum_probs=148.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
....|..+...+...|++++|+..|+++.+.. |+ +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~----------------------------------~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KE----------------------------------DAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTTC--TT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHH
Confidence 45567777777888888888888888877642 22 2234455556
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046631 557 MYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEG 633 (813)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a 633 (813)
.|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 6666666666666666554 2366778888888889999999999999988853 34566788888889999999999
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 634 LQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 634 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
..+++++.+. .| +...+..++.++.+.|++++|++.++++ ...|+...+|..+...+...|++++|...++++++
T Consensus 145 ~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 145 LPYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 9999998865 45 4788899999999999999999999886 44566666899999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHH
Q 046631 712 MDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 712 ~~p~~~~~~~~~~l~~~~ 729 (813)
.+|++ +..+..++.+.
T Consensus 222 ~~p~~--~~~~~~~~~l~ 237 (243)
T 2q7f_A 222 IQPDH--MLALHAKKLLG 237 (243)
T ss_dssp HCTTC--HHHHHHHTC--
T ss_pred cCcch--HHHHHHHHHHH
Confidence 99998 77666655443
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=2.3e-12 Score=137.45 Aligned_cols=262 Identities=12% Similarity=0.009 Sum_probs=166.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHhccCCChHHHHHHHHHHHHc----CC-CCchhHHHHH
Q 046631 485 IAGYTQNGLLEEAFVAFRQMLEHNVTPN-V----VTIASVLPACNPMGNIELGKQLHGFSIRY----LL-DQNVFVGTSL 554 (813)
Q Consensus 485 i~~~~~~~~~~~A~~~~~~m~~~~~~p~-~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 554 (813)
...+...|++++|+..|+++.+.+ |+ . ..+..+...+...|+++.|...++...+. +. .....++..+
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 334444444444444444444431 11 1 23333444444444444444444443322 10 1123455666
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---------CHhHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHhC
Q 046631 555 IDMYSKSGVINYAANVFAKIPEK---------NSVTYTTMILGYGQHGM-----------------SERALSLFRSMKGC 608 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~ 608 (813)
...|...|++++|...|++..+- ...++..+...|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66677777777777776655421 24467777778888888 88888887776542
Q ss_pred ----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHhC--
Q 046631 609 ----GIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKELG-- 677 (813)
Q Consensus 609 ----g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 677 (813)
+-.+. ..++..+...+...|++++|..++++..+...-.++ ...+..++.+|...|++++|.+.+++..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11111 236777777888899999999988887654211122 3478888899999999999999887752
Q ss_pred --cCCC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC----CchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 678 --EEGN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS----MPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 678 --~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..++ ...++..+...+...|++++|...+++++++.+... ....+..++.+|...|++++|...+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1121 234788888999999999999999999887654321 0336778899999999999999999988754
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=2.9e-12 Score=138.40 Aligned_cols=191 Identities=7% Similarity=-0.068 Sum_probs=166.8
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHhhCC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVI-NYAANVFAKIP--E-KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLS 622 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 622 (813)
+...+..+...|...|++ ++|++.|++.. . .+...|..+...|...|++++|+..|++..+ +.|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 556677777778888888 88888887765 2 3578999999999999999999999999998 5688788889999
Q ss_pred HHhcc---------CcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc--------CCHHHHHHHHHHhC-cCC---
Q 046631 623 ACSYA---------GLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRV--------GKVVEAYEFVKELG-EEG--- 680 (813)
Q Consensus 623 a~~~~---------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~-~~~--- 680 (813)
.+... |++++|...++++.+. .|+ ...|..++.+|... |++++|++.+++.. ..|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 99999 9999999999999865 675 88999999999998 99999999999974 366
Q ss_pred ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 046631 681 NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKE 744 (813)
Q Consensus 681 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 744 (813)
+.+.+|..+..++...|++++|...++++++++|++ +..+..++.++...|++++|.+.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW--PEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 677799999999999999999999999999999999 89999999999999999999875443
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.42 E-value=2.7e-11 Score=116.69 Aligned_cols=208 Identities=11% Similarity=0.028 Sum_probs=157.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
+...|..+...+...|++++|+..|+++.+.. |+ +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK----------------------------------NELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc----------------------------------chHHHHHHHH
Confidence 45577777888888888888888888877642 22 1224555556
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHH
Q 046631 557 MYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQH-GMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVD 631 (813)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~ 631 (813)
.|...|++++|.+.|+++. ..+..+|..+...|... |++++|+..++++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666554 23567788888888888 999999999999887433444 457778888889999999
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCC-ChHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 046631 632 EGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEG-NVLEIWGSLLGSCRLHGHSELAEVVAKK 708 (813)
Q Consensus 632 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 708 (813)
+|...++++.+. .|+ ...+..++.++.+.|++++|.+.++++ ...| .....+..+...+...|+.+.+..+++.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999988865 454 788889999999999999999999886 3445 5555777778888889999999999999
Q ss_pred HhcCCCCCCCchhHHHH
Q 046631 709 LLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 709 ~~~~~p~~~~~~~~~~l 725 (813)
+.+..|++ +.....+
T Consensus 208 ~~~~~p~~--~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYS--EELQTVL 222 (225)
T ss_dssp HHHHCTTC--HHHHHHH
T ss_pred HHHhCCCC--HHHHHHh
Confidence 99899987 6655444
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=4.8e-12 Score=134.58 Aligned_cols=95 Identities=12% Similarity=0.020 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCCCCC-----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHH
Q 046631 447 MESYLIDMYAKSGLIKTARQIFEKNDSGDRD-----QATWNAMIAGYTQNGLLEEAFVAFRQMLEH----NVTPN-VVTI 516 (813)
Q Consensus 447 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~t~ 516 (813)
........+...|++++|...|++.....|+ ...|..+...|...|++++|+..|++.... +-.|. ...+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3345566677777777777777765433342 235666677777777777777777765432 11111 2234
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHH
Q 046631 517 ASVLPACNPMGNIELGKQLHGFSIR 541 (813)
Q Consensus 517 ~~ll~~~~~~~~~~~a~~~~~~~~~ 541 (813)
..+...+...|++++|...+....+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~ 115 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLD 115 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555566666555554443
No 60
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=1.6e-09 Score=119.93 Aligned_cols=231 Identities=9% Similarity=-0.002 Sum_probs=172.1
Q ss_pred hHHHHHHHHHhCC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHH-HHHHHHHHcCCCCchhHH
Q 046631 480 TWNAMIAGYTQNG-------LLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGK-QLHGFSIRYLLDQNVFVG 551 (813)
Q Consensus 480 ~~~~li~~~~~~~-------~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~ 551 (813)
.|...+.---..+ ..+.+..+|++.+.. +.-+...|.....-+...|+.+.|. .+++..... .+.+...+
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lw 381 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 4555555433332 123456778887765 2345666766777677778888886 999988864 34566677
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-------------C------------CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046631 552 TSLIDMYSKSGVINYAANVFAKIPE-------------K------------NSVTYTTMILGYGQHGMSERALSLFRSMK 606 (813)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~-------------~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 606 (813)
-.++....+.|++++|.++|+++.+ | ....|...+....+.|+.+.|..+|.+.+
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7888888999999999999998763 2 12368888888888999999999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhCcC-C--
Q 046631 607 GC-GIEPDAITFVAVLSACSYA-GLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELGEE-G-- 680 (813)
Q Consensus 607 ~~-g~~p~~~~~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-- 680 (813)
+. + .+....|...+..-.+. ++.+.|..+|+...+.+ | +...+...++.....|+.+.|..+|++.... +
T Consensus 462 ~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~---p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 462 RLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF---ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 85 2 12233443333322333 55899999999999873 4 4666778888888999999999999997433 2
Q ss_pred -ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 681 -NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 681 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
....+|...+..-.++|+.+.+..+.+++.+..|++
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 244589999999999999999999999999999997
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=1.2e-11 Score=123.49 Aligned_cols=242 Identities=11% Similarity=-0.035 Sum_probs=160.3
Q ss_pred HCCCcHHHHHHHHHHHHCCCC---CCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHH
Q 046631 388 QNGLDDEGLMLVYEMQKQGFM---IDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTA 464 (813)
Q Consensus 388 ~~g~~~~A~~~~~~m~~~g~~---pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 464 (813)
..|++++|+..|+++.+.... .+..++..+...+...|+++.|...+..+++..+....++..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 457899999999999886421 23557777888888899999999999998888776557778888888889999999
Q ss_pred HHHHhhcCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcC
Q 046631 465 RQIFEKNDSGDR-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYL 543 (813)
Q Consensus 465 ~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 543 (813)
.+.|++.....| +...|..+...|...|++++|+..|+++.+. .|+.......+..+...|+.++|...+.......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 998887665455 6778888888888899999999999888874 3554444444445555677777777776665543
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 046631 544 LDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKN-------SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAIT 616 (813)
Q Consensus 544 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 616 (813)
. ++...+ .++..+...++.++|.+.+++..+.+ ...|..+...|...|++++|+..|+++.+. .|+..
T Consensus 175 ~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~- 249 (275)
T 1xnf_A 175 D-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNF- 249 (275)
T ss_dssp C-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTC-
T ss_pred C-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhH-
Confidence 2 222222 35555666666666777666655432 345555666666666666666666666652 33221
Q ss_pred HHHHHHHHhccCcHHHHHHHH
Q 046631 617 FVAVLSACSYAGLVDEGLQIF 637 (813)
Q Consensus 617 ~~~ll~a~~~~g~~~~a~~~~ 637 (813)
.....++...|++++|++.+
T Consensus 250 -~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 -VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHhhHHHH
Confidence 11123344455555554443
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=6.7e-12 Score=129.46 Aligned_cols=200 Identities=15% Similarity=0.044 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHH
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIPE-----KN----SVTYTTMILGYGQHGM--------------------SERAL 599 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 599 (813)
.++..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 3455666667777777777777666541 12 3367777777778888 88888
Q ss_pred HHHHHHHhC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHH
Q 046631 600 SLFRSMKGC----GIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAY 670 (813)
Q Consensus 600 ~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 670 (813)
+.+++..+. +..+. ..++..+...+...|++++|...+++..+...-.++ ...+..++.++...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888776542 11111 236777777888899999999998887654211122 447888899999999999999
Q ss_pred HHHHHhC----cCCC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC----chhHHHHHHHHHhcCCcHHHH
Q 046631 671 EFVKELG----EEGN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM----PGYHVLLSNIYAEEGNWENVD 739 (813)
Q Consensus 671 ~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~ 739 (813)
+.+++.. ..++ ...++..+...+...|++++|...++++++..+.... ...+..++.+|.+.|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 9888752 2222 2347788899999999999999999999876544210 336778999999999999999
Q ss_pred HHHHHHHHC
Q 046631 740 KVRKEMRER 748 (813)
Q Consensus 740 ~~~~~m~~~ 748 (813)
..+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998864
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=138.25 Aligned_cols=298 Identities=11% Similarity=0.015 Sum_probs=208.9
Q ss_pred CCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc----chHHHHHHHHHhcCCHHHHHHHHhhcCCC------CC-
Q 046631 408 MIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE----GMESYLIDMYAKSGLIKTARQIFEKNDSG------DR- 476 (813)
Q Consensus 408 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~- 476 (813)
......+......+...|+++.|...++.+++..+... .++..+...|...|++++|...|++.... .|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34555667777889999999999999999999876543 35678889999999999999999864211 11
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046631 477 DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVT-PNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLI 555 (813)
Q Consensus 477 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 555 (813)
...++..+...|...|++++|+..+++....... ++... ...++..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG-------------------------------EARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc-------------------------------hHHHHHHHH
Confidence 3457888899999999999999999988763100 11100 011233444
Q ss_pred HHHHhcCC--------------------HHHHHHHHhhCC-------CC--CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046631 556 DMYSKSGV--------------------INYAANVFAKIP-------EK--NSVTYTTMILGYGQHGMSERALSLFRSMK 606 (813)
Q Consensus 556 ~~~~~~g~--------------------~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 606 (813)
..|...|+ +++|.+.+++.. .+ ...++..+...|...|++++|+..+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444444 555554444332 11 23467778888888888888888888876
Q ss_pred hCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHhC
Q 046631 607 GCGI-EPD----AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKELG 677 (813)
Q Consensus 607 ~~g~-~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 677 (813)
+... .++ ..++..+...+...|++++|..++++..+...-.++ ..++..++.+|...|++++|.+.+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5311 112 226777888888999999999999887654211122 5678889999999999999999988762
Q ss_pred ----cCCC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC----CchhHHHHHHHHHhcCCcH
Q 046631 678 ----EEGN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS----MPGYHVLLSNIYAEEGNWE 736 (813)
Q Consensus 678 ----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~~~l~~~~~~~g~~~ 736 (813)
..++ ...++..+...+...|++++|...+++++++.+... ....+..++.+|...|+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 2222 234788899999999999999999999887633221 1445667888888877664
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=4.6e-12 Score=142.03 Aligned_cols=164 Identities=15% Similarity=0.184 Sum_probs=148.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 046631 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCC 655 (813)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 655 (813)
+..+|+.|...|.+.|++++|++.|++.++ +.|+ ...+..+..++.+.|++++|+..|++..+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 467889999999999999999999999998 5665 458889999999999999999999999854 786 889999
Q ss_pred HHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 656 VADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
++.+|.+.|++++|++.+++. ..+|+...+|..++.++...|++++|+..++++++++|++ +..+..++.+|...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~--~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF--PDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHhhhhhHHHhccc
Confidence 999999999999999999886 6678888899999999999999999999999999999999 9999999999999999
Q ss_pred cHHHHHHHHHHHHC
Q 046631 735 WENVDKVRKEMRER 748 (813)
Q Consensus 735 ~~~A~~~~~~m~~~ 748 (813)
|++|.+.++++.+.
T Consensus 161 ~~~A~~~~~kal~l 174 (723)
T 4gyw_A 161 WTDYDERMKKLVSI 174 (723)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=1.6e-11 Score=114.03 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=146.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSA 623 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 623 (813)
+..+|..+...|.+.|++++|.+.|++.. ..+..+|..+...|...|++++|+..+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 55678999999999999999999999876 3478899999999999999999999999998843 3345567777778
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHH
Q 046631 624 CSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSEL 701 (813)
Q Consensus 624 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 701 (813)
+...++++.+...+.+..+. .|+ ...+..++.+|.+.|++++|++.+++. ...|..+.+|..++.++...|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 89999999999999998854 564 888999999999999999999999886 5677777799999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 046631 702 AEVVAKKLLEMDTRN 716 (813)
Q Consensus 702 a~~~~~~~~~~~p~~ 716 (813)
|+..++++++++|++
T Consensus 160 A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhCCccC
Confidence 999999999999875
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=5.3e-12 Score=134.57 Aligned_cols=272 Identities=12% Similarity=0.009 Sum_probs=175.2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc----chHHHHHHHHHhcCCHHHHHHHHhhcCCC------CC-ChhhH
Q 046631 413 TVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE----GMESYLIDMYAKSGLIKTARQIFEKNDSG------DR-DQATW 481 (813)
Q Consensus 413 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~ 481 (813)
.+..+...+...|+++.|...++.+++..+... .++..+...|...|++++|...|++.... .+ ....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 333444556666667777766666666644432 23455555666666666666665543211 11 23345
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHh
Q 046631 482 NAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYL-LDQNVFVGTSLIDMYSK 560 (813)
Q Consensus 482 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~ 560 (813)
..+...|...|++++|+..|++...... +.+ ......++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHH
Confidence 5555566666666666666655443200 000 01123345566666666
Q ss_pred cCC-----------------HHHHHHHHhhCCC-------C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC
Q 046631 561 SGV-----------------INYAANVFAKIPE-------K--NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIE-PD 613 (813)
Q Consensus 561 ~g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~ 613 (813)
.|+ +++|.+.+++..+ + ...+|..+...|...|++++|+..+++..+.... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 676 6666666665431 1 2347778888899999999999999888763111 12
Q ss_pred ----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHhCc-------
Q 046631 614 ----AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKELGE------- 678 (813)
Q Consensus 614 ----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 678 (813)
..++..+...+...|++++|...+++..+...-..+ ..++..++.+|...|++++|.+.+++...
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 126778888899999999999999888754211112 57788999999999999999999887621
Q ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 679 EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 679 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
.+....++..+...+...|++++|...+++++++.+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 1122347888999999999999999999999988765
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=1.8e-11 Score=128.97 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=58.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCc------CCChHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEY---KIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGE------EGNVLEI 685 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~ 685 (813)
++..+...|...|++++|...+++..+.. +..|. ..++..++.+|.+.|++++|.+.+++... .+.....
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34444444555555555555554444310 11122 44455555555555555555555544311 1111112
Q ss_pred HHHHHHHHHHhCC---HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 686 WGSLLGSCRLHGH---SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 686 ~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+..+...+...|+ .++|...+++. ...|.. ...+..++.+|...|++++|.+.+++..+
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~--~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADL--EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444444555 44444444443 111222 34455556666666666666666655544
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=1.7e-11 Score=126.47 Aligned_cols=166 Identities=11% Similarity=0.024 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHhhCCC-----C----CHhHHHHHHHHHHhcCChHHHHH
Q 046631 550 VGTSLIDMYSKSGV--------------------INYAANVFAKIPE-----K----NSVTYTTMILGYGQHGMSERALS 600 (813)
Q Consensus 550 ~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~ 600 (813)
++..+...|...|+ +++|.+.+++..+ . ...++..+...+...|++++|+.
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55566666666676 6777666665431 1 23467788888889999999999
Q ss_pred HHHHHHhCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHH
Q 046631 601 LFRSMKGCGI-EPD----AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYE 671 (813)
Q Consensus 601 ~~~~m~~~g~-~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 671 (813)
.+++..+... .++ ..++..+...+...|++++|..++++..+...-.++ ..++..++.+|...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9988765311 111 226777888889999999999999887654211122 6678889999999999999999
Q ss_pred HHHHhCc----CC---ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 672 FVKELGE----EG---NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 672 ~~~~~~~----~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
.+++... .+ ....++..+...+...|++++|...+++++++.+.
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 9887621 12 22337888999999999999999999999988765
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=2.8e-11 Score=116.90 Aligned_cols=188 Identities=11% Similarity=-0.038 Sum_probs=112.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP---E-KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA-ITFVAVL 621 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll 621 (813)
|+..+......|.+.|++++|.+.|++.. . ++...+..+..++...|++++|+..|++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 44556666666666777777776666554 2 4555555566666666777777777766666 34433 3555666
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCC-h-------hHHHHHHHHHhccCCHHHHHHHHHHh-CcCCC--hHHHHHHHH
Q 046631 622 SACSYAGLVDEGLQIFDLMQQEYKIQPS-T-------EHYCCVADMLGRVGKVVEAYEFVKEL-GEEGN--VLEIWGSLL 690 (813)
Q Consensus 622 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~~~~l~ 690 (813)
..+...|++++|...+++..+. .|+ . ..|..++..+.+.|++++|++.++++ ...|+ ...+|..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 6666666777777666666643 343 3 34666666666666666666666665 33455 445666666
Q ss_pred HHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 691 GSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 691 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.++... +...++++..+.+.+ ...+. .......|.+++|...+++..+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~--~~~~~--~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSN--KEKYA--SEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTC--HHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcccCC--HHHHH--HHHHHHHHHHHHHHHHHHHHhhc
Confidence 665433 334445555555443 33222 22334445569999999998854
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=1.1e-08 Score=113.19 Aligned_cols=147 Identities=12% Similarity=0.107 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCC---hHHHHH
Q 046631 208 VEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGC---FDFARK 284 (813)
Q Consensus 208 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 284 (813)
.+.+..|++-+..+ +-|..+|..++..+...+.++.++.+|+.++..-+. ....|...+..-.+.|. ++.+..
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~---~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL---MANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 33444444444433 346667777887777777888888888888877643 56677777777777777 888888
Q ss_pred HHhhcCC-----CCcchHHHHHHHHHhCCCc--------hHHHHHHHHHHHhCCC-CCCh-hhHHHHHHHhc--------
Q 046631 285 IFDNCLE-----RNTEVWNTMIGGYVQNNHP--------VEAIELFVQVLELDEI-VFDD-VTFLSALSAVS-------- 341 (813)
Q Consensus 285 ~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~m~~~g~-~p~~-~t~~~ll~~~~-------- 341 (813)
+|++... +++..|...+....+.++. +.+.++|+..+..-|. .|+. ..|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 8887643 5666777777655554443 3344778777777787 6654 45555554432
Q ss_pred -ccCcchHHHHHHHHHHH
Q 046631 342 -QLQELDLGQQLHAYIIK 358 (813)
Q Consensus 342 -~~~~~~~a~~~~~~~~~ 358 (813)
..++++.+..+|..++.
T Consensus 205 eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHh
Confidence 23345667777777654
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=6.5e-10 Score=112.74 Aligned_cols=217 Identities=12% Similarity=0.081 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhc-------cCCCh-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046631 495 EEAFVAFRQMLEHNVTPNVVTIASVLPACN-------PMGNI-------ELGKQLHGFSIRYLLDQNVFVGTSLIDMYSK 560 (813)
Q Consensus 495 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 560 (813)
++|+.+|++.+... +-+...|..+...+. ..|+. ++|..+++...+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665531 223334444443332 23443 5566666665553112344566677777777
Q ss_pred cCCHHHHHHHHhhCCC--C-CHh-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCcHHHHHH
Q 046631 561 SGVINYAANVFAKIPE--K-NSV-TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSAC-SYAGLVDEGLQ 635 (813)
Q Consensus 561 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~-~~~g~~~~a~~ 635 (813)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++.++.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777776653 3 233 67777777777777777777777777743 22333343333222 23577778887
Q ss_pred HHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhCc----CC-ChHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 046631 636 IFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELGE----EG-NVLEIWGSLLGSCRLHGHSELAEVVAKKL 709 (813)
Q Consensus 636 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 709 (813)
+|++..+. .| +...|..++..+.+.|++++|..+|++... .| ....+|..++......|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777754 35 367777777777777888888877777643 22 23447777777777777777777777777
Q ss_pred hcCCCCC
Q 046631 710 LEMDTRN 716 (813)
Q Consensus 710 ~~~~p~~ 716 (813)
++..|++
T Consensus 268 ~~~~p~~ 274 (308)
T 2ond_A 268 FTAFREE 274 (308)
T ss_dssp HHHTTTT
T ss_pred HHHcccc
Confidence 7777765
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=4.6e-11 Score=128.94 Aligned_cols=179 Identities=11% Similarity=-0.007 Sum_probs=158.5
Q ss_pred HHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 046631 564 INYAANVFAKIP---EKNSVTYTTMILGYGQHGMS-ERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFD 638 (813)
Q Consensus 564 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~ 638 (813)
++++...+++.. ..+...|..+...|...|++ ++|++.|++.++. .|+ ...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455556665443 34788999999999999999 9999999999984 454 6689999999999999999999999
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhcc---------CCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh--------CCHH
Q 046631 639 LMQQEYKIQPSTEHYCCVADMLGRV---------GKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH--------GHSE 700 (813)
Q Consensus 639 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~--------g~~~ 700 (813)
+.. .+.|+...+..++.+|... |++++|++.++++ ...|+...+|..++.++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 5579889999999999999 9999999999986 56677777999999999999 9999
Q ss_pred HHHHHHHHHhcCCC---CCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 701 LAEVVAKKLLEMDT---RNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 701 ~a~~~~~~~~~~~p---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
+|+..++++++++| .+ +..+..++.+|...|++++|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSN--PDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcccC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999 88 9999999999999999999999999998653
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=4.5e-11 Score=121.73 Aligned_cols=234 Identities=16% Similarity=0.116 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C-
Q 046631 513 VVTIASVLPACNPMGNIELGKQLHGFSIRY-------LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE-------K- 577 (813)
Q Consensus 513 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~- 577 (813)
..++..+...+...|++++|..+++.+.+. .......++..+...|...|++++|...|++..+ +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777778888888888888888887763 2333456777788888888888888888877642 1
Q ss_pred ---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc---
Q 046631 578 ---NSVTYTTMILGYGQHGMSERALSLFRSMKGC------GIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEY--- 644 (813)
Q Consensus 578 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--- 644 (813)
...+|..+...|...|++++|+..++++.+. +-.|+ ...+..+...+...|++++|..+++++.+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3457777888888888888888888888764 22232 2356777778888888888888888876531
Q ss_pred --CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCc----------CCChH------HHHHHHHHHHHHhCCHHHHHHH
Q 046631 645 --KIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGE----------EGNVL------EIWGSLLGSCRLHGHSELAEVV 705 (813)
Q Consensus 645 --~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~------~~~~~l~~~~~~~g~~~~a~~~ 705 (813)
+..|. ...+..++.+|.+.|++++|.+.++++.. .+... ..+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 11232 56777888888888888888888877632 11111 1222333334444555556666
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 706 AKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 706 ~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
++++....|.. +..+..++.+|.+.|++++|.+++++..+.
T Consensus 267 ~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 267 YKACKVDSPTV--TTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -------CHHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhcCCCCchH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777677777 788999999999999999999999998753
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=6.2e-11 Score=124.80 Aligned_cols=295 Identities=7% Similarity=-0.047 Sum_probs=216.0
Q ss_pred HhcCCChHHHHHHHHHHHHhCCC--Cc-c--hHHHHHHH--HHhcCCHHHHH-----------HHHhhcCCCCCChhhHH
Q 046631 421 ASNLRNQDVGKQTHAYLLRHGIH--FE-G--MESYLIDM--YAKSGLIKTAR-----------QIFEKNDSGDRDQATWN 482 (813)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~--~~-~--~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~ 482 (813)
+.+.++++.|..+.+.+.+.-.. .+ . ++-.++.. ..-.+.++.+. +.++.+.....+...+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 55789999999999998775322 23 2 22222222 22233444444 56665542122222222
Q ss_pred ------HHHHHHHhCCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHhccCCChHHHHHHHHHHHHc--CC----C
Q 046631 483 ------AMIAGYTQNGLLEEAFVAFRQMLEHN-VTPN----VVTIASVLPACNPMGNIELGKQLHGFSIRY--LL----D 545 (813)
Q Consensus 483 ------~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~----~ 545 (813)
.....+...|++++|+..|++....- -.++ ..++..+...+...|+.+.|...+....+. .. .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 24566788999999999999987641 1122 356778888899999999999999988764 11 1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC
Q 046631 546 QNVFVGTSLIDMYSKSGVINYAANVFAKIPE-----KN----SVTYTTMILGYGQHGMSERALSLFRSMKGC----GIEP 612 (813)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p 612 (813)
....+++.+...|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..+++..+. +..|
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1245788889999999999999999988762 22 247888999999999999999999998872 2323
Q ss_pred C-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CCC-hhHHHHHHHHHhccCC---HHHHHHHHHHhCcCCChHHH
Q 046631 613 D-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKI--QPS-TEHYCCVADMLGRVGK---VVEAYEFVKELGEEGNVLEI 685 (813)
Q Consensus 613 ~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~ 685 (813)
+ ..++..+...+...|++++|...+++..+...- .|. ...+..+..+|...|+ +++|+.++++....+....+
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3 457888899999999999999999988754211 122 3446778999999999 99999999998666666668
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+..+...+...|++++|...+++++++...
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999876443
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=2e-10 Score=106.55 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADM 659 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 659 (813)
.|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|..+++++.+. .| +...+..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHH
Confidence 34444555555555555555555554421 223445555555666666666666666666543 33 35566666666
Q ss_pred HhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHH
Q 046631 660 LGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENV 738 (813)
Q Consensus 660 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 738 (813)
+...|++++|.+.++++ ...|....+|..++..+...|++++|...++++++..|.+ +..+..++.+|...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE--GKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666664 2334444467777777777777777777777777777776 67777777777777777777
Q ss_pred HHHHHHHHHC
Q 046631 739 DKVRKEMRER 748 (813)
Q Consensus 739 ~~~~~~m~~~ 748 (813)
...++++.+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7777777654
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=8e-12 Score=127.32 Aligned_cols=238 Identities=13% Similarity=0.080 Sum_probs=150.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHc------C-
Q 046631 478 QATWNAMIAGYTQNGLLEEAFVAFRQMLEH-------NVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRY------L- 543 (813)
Q Consensus 478 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 543 (813)
..++..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...++...+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666666666667777776666666552 11222344555666666667777776666665543 1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 046631 544 LDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE----------K-NSVTYTTMILGYGQHGMSERALSLFRSMKGC---- 608 (813)
Q Consensus 544 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 608 (813)
......++..+...|...|++++|.+.|+++.+ + ...++..+...|...|++++|+++++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 122345667777778888888888887776542 1 3456788888889999999999999988774
Q ss_pred --CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhc------CCCCC-h------hHHHHHHHHHhccCCHHHHHHH
Q 046631 609 --GIEPDA-ITFVAVLSACSYAGLVDEGLQIFDLMQQEY------KIQPS-T------EHYCCVADMLGRVGKVVEAYEF 672 (813)
Q Consensus 609 --g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~------~~~~~l~~~~~~~g~~~~A~~~ 672 (813)
+..|+. .++..+...+...|++++|..+++++.+.. ...+. . ..+..+...+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 223333 367778888999999999999998887531 11222 1 2222333344455566666666
Q ss_pred HHHhC-cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 673 VKELG-EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 673 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
++... ..|....+|..++..|...|++++|...+++++++.|+
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 66664 34556668999999999999999999999999988764
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=5.1e-10 Score=107.99 Aligned_cols=205 Identities=8% Similarity=0.026 Sum_probs=160.3
Q ss_pred CCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--C-CCHhHHHHHHH
Q 046631 511 PNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP--E-KNSVTYTTMIL 587 (813)
Q Consensus 511 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~ 587 (813)
.|...+......+...|++++|...++...+....++...+..+..+|.+.|++++|.+.|++.. . .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45677888888899999999999999999988754677777779999999999999999999876 2 35778999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC---hhHHHHH
Q 046631 588 GYGQHGMSERALSLFRSMKGCGIEPD-A-------ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS---TEHYCCV 656 (813)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 656 (813)
.|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|+..|+++. .+.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 999999999999999999984 454 3 347777778889999999999999988 55776 5778888
Q ss_pred HHHHhccCCHHHHHHHHHHhCcC-CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 657 ADMLGRVGKVVEAYEFVKELGEE-GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
+.+|...|+. .++++... +.....+..+ .....+.+++|...++++++++|++ +.....++.+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNR--TEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHH
Confidence 8888766643 23333111 1112233332 2344567899999999999999998 77777776654
No 78
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=5e-10 Score=113.63 Aligned_cols=213 Identities=13% Similarity=0.065 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhhCCC---C-CHhHHHHHHHHHHh
Q 046631 530 ELGKQLHGFSIRYLLDQNVFVGTSLIDMYS-------KSGVI-------NYAANVFAKIPE---K-NSVTYTTMILGYGQ 591 (813)
Q Consensus 530 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 591 (813)
++|..+|+.+.+.. +.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888777753 346667777777765 45886 899999998653 3 56799999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH-H-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHh-ccCCHH
Q 046631 592 HGMSERALSLFRSMKGCGIEPDA-I-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLG-RVGKVV 667 (813)
Q Consensus 592 ~g~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~-~~g~~~ 667 (813)
.|++++|..+|+++++ +.|+. . .|..+...+.+.|++++|..+|++..+ ..|+ ...|...+.... ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 56653 3 788999999999999999999999984 4554 555654444432 379999
Q ss_pred HHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC---CCC-CCCchhHHHHHHHHHhcCCcHHHHHHH
Q 046631 668 EAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM---DTR-NSMPGYHVLLSNIYAEEGNWENVDKVR 742 (813)
Q Consensus 668 ~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 742 (813)
+|.++|++. ...|+.+.+|..++..+...|+.++|..+++++++. .|+ . ...+..++..+.+.|+.++|..++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~--~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS--GEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC--HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999987 455666779999999999999999999999999996 443 3 567788889999999999999999
Q ss_pred HHHHHCCC
Q 046631 743 KEMRERGL 750 (813)
Q Consensus 743 ~~m~~~~~ 750 (813)
+++.+..+
T Consensus 265 ~~a~~~~p 272 (308)
T 2ond_A 265 KRRFTAFR 272 (308)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 99987654
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=1.3e-09 Score=114.30 Aligned_cols=30 Identities=7% Similarity=-0.024 Sum_probs=19.5
Q ss_pred CcchHHHHHHHH--HHCCCcHHHHHHHHHHHH
Q 046631 375 DVVSWNTMISAF--VQNGLDDEGLMLVYEMQK 404 (813)
Q Consensus 375 ~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~ 404 (813)
+..+-+.|-..| .+.+++++|..+++++..
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~ 40 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQ 40 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 333444455555 777888888888877655
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.20 E-value=7.6e-10 Score=102.59 Aligned_cols=164 Identities=15% Similarity=0.063 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACS 625 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~ 625 (813)
..+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4566778889999999999999999874 367889999999999999999999999999852 345668888888999
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHH
Q 046631 626 YAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAE 703 (813)
Q Consensus 626 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 703 (813)
..|++++|..+++++.+. .| +...+..++.++.+.|++++|.+.++++ ...|....+|..++..+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999865 45 5888999999999999999999999986 445666669999999999999999999
Q ss_pred HHHHHHhcCCCCC
Q 046631 704 VVAKKLLEMDTRN 716 (813)
Q Consensus 704 ~~~~~~~~~~p~~ 716 (813)
..++++++..|++
T Consensus 165 ~~~~~~~~~~~~~ 177 (186)
T 3as5_A 165 PHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCc
Confidence 9999999998887
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=1.1e-08 Score=107.18 Aligned_cols=198 Identities=13% Similarity=0.080 Sum_probs=118.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--C--CHH
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIPE----------K-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIE--P--DAI 615 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 615 (813)
+..+...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 44455566666666666666655431 1 1234555666777777777777777776653211 1 123
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHhccCCHHHHHHHHHHhCcCC-C----hHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYC-----CVADMLGRVGKVVEAYEFVKELGEEG-N----VLEI 685 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~-~----~~~~ 685 (813)
++..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++..... . ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566666677777888888887777764411111111111 23344667788888888877763211 1 1124
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC----CchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS----MPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+..+...+...|++++|...++++++..+... ....+..++.+|...|+.++|...+++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56667777777888888888877765533210 0235566777788888888888887777643
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=1.4e-09 Score=114.02 Aligned_cols=221 Identities=8% Similarity=0.019 Sum_probs=137.6
Q ss_pred ccCCChHHHHHHHHHHHHcCC-CC----chhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C-----CHhHHHHHHHH
Q 046631 524 NPMGNIELGKQLHGFSIRYLL-DQ----NVFVGTSLIDMYSKSGVINYAANVFAKIPE-----K-----NSVTYTTMILG 588 (813)
Q Consensus 524 ~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~ 588 (813)
...|+++.|...+....+... .+ ...++..+...|...|+++.|...+++..+ + ...+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 444555555555555443210 01 233556666667777777776666665431 1 13466777777
Q ss_pred HHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC--CCCC-hhHHHHHHHHH
Q 046631 589 YGQHGMSERALSLFRSMKGC----GIEP-DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYK--IQPS-TEHYCCVADML 660 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~-~~~~~~l~~~~ 660 (813)
|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|...+++..+... ..|. ..++..++.+|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 88888888888887776652 1111 123566777778888888888888887765210 2333 66777888888
Q ss_pred hccCCHHHHHHHHHHhC----c--CCChHHHHHHHHHHHHHhCC---HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh
Q 046631 661 GRVGKVVEAYEFVKELG----E--EGNVLEIWGSLLGSCRLHGH---SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE 731 (813)
Q Consensus 661 ~~~g~~~~A~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 731 (813)
.+.|++++|...+++.. . .+.....+..+...+...++ .++|...+++. ...|.. ...+..++.+|..
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~--~~~~~~la~~y~~ 348 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYI--EACARSAAAVFES 348 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHH--HHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHH--HHHHHHHHHHHHH
Confidence 88888888888887751 1 22333345556666666677 66677666652 122222 4566678888888
Q ss_pred cCCcHHHHHHHHHHHH
Q 046631 732 EGNWENVDKVRKEMRE 747 (813)
Q Consensus 732 ~g~~~~A~~~~~~m~~ 747 (813)
.|++++|.+.+++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888887764
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=1.7e-10 Score=129.31 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=145.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP--EK-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLS 622 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 622 (813)
+...++.|...|.+.|++++|++.|++.. .| +..+|+.+..+|.+.|++++|+..|++.++ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45678899999999999999999999876 33 688999999999999999999999999998 5665 558999999
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSE 700 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 700 (813)
++...|++++|++.|++..+. .|+ ...|..++.+|.+.|++++|++.+++. ..+|+...+|..|+.++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999854 785 889999999999999999999999986 677888889999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 046631 701 LAEVVAKKLLEMDT 714 (813)
Q Consensus 701 ~a~~~~~~~~~~~p 714 (813)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999998877543
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=2e-09 Score=106.25 Aligned_cols=86 Identities=9% Similarity=0.000 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC-CchhHHHHHHHHHhc----------CCcHHHHHHHHHHHHCCCccCC
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS-MPGYHVLLSNIYAEE----------GNWENVDKVRKEMRERGLRKEV 754 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~ 754 (813)
+..++..+...|++++|+..++++++..|++. .+..+..++.+|... |++++|...++++.+..+
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---- 226 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---- 226 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----
Confidence 46778999999999999999999999999852 145788899999877 999999999999986432
Q ss_pred ceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 046631 755 GCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMRN 794 (813)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 794 (813)
.+|........+..+...+.+
T Consensus 227 -------------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------------CChHHHHHHHHHHHHHHHHHH
Confidence 245455666677776666554
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=1.6e-09 Score=108.26 Aligned_cols=222 Identities=15% Similarity=0.099 Sum_probs=152.3
Q ss_pred ccCCChHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----------C-CHhHHHHH
Q 046631 524 NPMGNIELGKQLHGFSIRY-------LLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE----------K-NSVTYTTM 585 (813)
Q Consensus 524 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l 585 (813)
...|+++.|..++++..+. ..+....++..+...|...|++++|...|+++.+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777787777766652 2233466788888899999999999988887651 1 35578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc----C-CCCC-hhH
Q 046631 586 ILGYGQHGMSERALSLFRSMKGC------GIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEY----K-IQPS-TEH 652 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~ 652 (813)
...|...|++++|+..+++..+. .-.|+ ..++..+...+...|++++|..+++++.+.. + -.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999988764 11232 3467778888889999999999998887541 1 1232 677
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhCc----------CCChHHHHHHHHHHHHHhCC------HHHHHHHHHHHhcCCCCC
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKELGE----------EGNVLEIWGSLLGSCRLHGH------SELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~ 716 (813)
+..++.+|.+.|++++|.++++++.. .+.....|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 88889999999999999998887621 22222255555444443333 233333333333333444
Q ss_pred CCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 717 SMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 717 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+..+..++.+|...|++++|..++++..+
T Consensus 252 --~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 --NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66788899999999999999999999875
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.07 E-value=1.6e-10 Score=102.71 Aligned_cols=142 Identities=8% Similarity=-0.101 Sum_probs=111.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc
Q 046631 586 ILGYGQHGMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRV 663 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 663 (813)
...+...|++++|+..+++... ..|+.. .+..+...|...|++++|++.|++..+. .|+ ..+|..++.+|.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 3445566777888888887765 334333 5566777888889999999999888854 674 88888999999999
Q ss_pred CCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHH-HHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 664 GKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEV-VAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 664 g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
|++++|+..+++. ...|+.+.+|..++..+.+.|++++|.. .++++++++|++ +..+.+.+.++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~--~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS--PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC--HHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHhCc
Confidence 9999999988886 5677777789999999999998876555 568999999998 8888888888888775
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=1.4e-08 Score=97.43 Aligned_cols=179 Identities=9% Similarity=-0.029 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHH
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIPE--KN----SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAI----TFV 618 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~ 618 (813)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|...|++++|+..|+++++. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444555566667777777777776652 22 245666666777777777777777776663 23221 233
Q ss_pred HHHHHHhc------------------cCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcC
Q 046631 619 AVLSACSY------------------AGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEE 679 (813)
Q Consensus 619 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 679 (813)
.+..++.. .|+.++|...|+++.+. .|+ ...+.....+.. +...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----------~~~~---- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----------LKDR---- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----------HHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----------HHHH----
Confidence 33333332 34555555555555522 343 222211110000 0000
Q ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCc---hhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 680 GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMP---GYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 680 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
.......++..+...|++++|+..++++++..|++ + ..+..++.+|.+.|++++|.+.++.+...++
T Consensus 146 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 146 --LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT--QATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC--CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00122456778889999999999999999999986 5 4688899999999999999999999987654
No 88
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.04 E-value=6.7e-08 Score=101.05 Aligned_cols=266 Identities=10% Similarity=0.003 Sum_probs=132.1
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc------chHH
Q 046631 380 NTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSV----TVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE------GMES 449 (813)
Q Consensus 380 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 449 (813)
......+...|++++|...+++.....-..+.. ++..+...+...|+++.|...+....+...... ....
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344456678899999999999988764222222 233334445556666666666655544321111 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC-----C---C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046631 450 YLIDMYAKSGLIKTARQIFEKNDSG-----D---R-DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVL 520 (813)
Q Consensus 450 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll 520 (813)
.+...+...|++++|...+++.... . | ....+..+...|...|++++|...+++........
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------- 168 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY--------- 168 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---------
Confidence 3444455555555555554432110 0 1 11233334444455555555555555444321110
Q ss_pred HHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC-HhHHH-----HHHHHHH
Q 046631 521 PACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP----EKN-SVTYT-----TMILGYG 590 (813)
Q Consensus 521 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~-----~li~~~~ 590 (813)
+.......+..+...+...|++++|...+++.. .++ ...|. ..+..+.
T Consensus 169 ----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (373)
T 1hz4_A 169 ----------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 226 (373)
T ss_dssp ----------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred ----------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 000012234445555555666666665555432 111 11111 1223355
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCCC-hhHHHHHHHHHhcc
Q 046631 591 QHGMSERALSLFRSMKGCGIEPD---AITFVAVLSACSYAGLVDEGLQIFDLMQQEY---KIQPS-TEHYCCVADMLGRV 663 (813)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~ 663 (813)
..|++++|...+++.......+. ...+..+...+...|++++|...+++..... +..++ ...+..+..++...
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 66666666666666554321111 2234555566666777777777766654331 21122 23566667777777
Q ss_pred CCHHHHHHHHHHh
Q 046631 664 GKVVEAYEFVKEL 676 (813)
Q Consensus 664 g~~~~A~~~~~~~ 676 (813)
|+.++|...+++.
T Consensus 307 g~~~~A~~~l~~a 319 (373)
T 1hz4_A 307 GRKSDAQRVLLDA 319 (373)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7777777777665
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=3.5e-08 Score=96.54 Aligned_cols=242 Identities=9% Similarity=-0.022 Sum_probs=158.6
Q ss_pred HHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHH
Q 046631 455 YAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQ 534 (813)
Q Consensus 455 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 534 (813)
..-.|.+..++.-...+....++ ..-.-+..+|...|++... ..-.|....+..+..-+ ..+ +..
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~ 87 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIE 87 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCH
T ss_pred HHHhhHHHHHHHHHHhcCccchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHH
Confidence 33456666666644444422222 2222334566666665431 11223332333332222 221 445
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 046631 535 LHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE-----KNSVTYTTMILGYGQHGMSERALSLFRSMKGCG 609 (813)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 609 (813)
.++.....+ .++...+..+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 88 ~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-- 164 (310)
T 3mv2_B 88 ELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-- 164 (310)
T ss_dssp HHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 555555444 34444556777888889999999999987642 3566788888999999999999999999988
Q ss_pred CCC-----CHHHHHHHHHHH--hccC--cHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCc--
Q 046631 610 IEP-----DAITFVAVLSAC--SYAG--LVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGE-- 678 (813)
Q Consensus 610 ~~p-----~~~~~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 678 (813)
..| +..+...|+.++ ...| +..+|..+|+++... .|+......+..++.+.|++++|.+.++.+..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 577 356667777663 3334 899999999998754 46633344445588999999999999987633
Q ss_pred ---------CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchh
Q 046631 679 ---------EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGY 721 (813)
Q Consensus 679 ---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 721 (813)
.|+.+++...++......|+ +|.++++++.+..|++ +..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h--p~i 289 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH--AFI 289 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC--HHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC--hHH
Confidence 37777777666666666787 8899999999999997 544
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=8.8e-09 Score=101.59 Aligned_cols=167 Identities=10% Similarity=-0.017 Sum_probs=131.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C---HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-N---SVTYTTMILGYGQHGMSERALSLFRSMKGCGI-EPD-AITFV 618 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~ 618 (813)
+...+-.+...+.+.|++++|...|+++.+ | + ...+..+..+|...|++++|+..|++.++... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445566677778888999999999988763 3 3 56788888899999999999999999988422 112 23566
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHHHHhcCCCCC-hhHH-----------------HHHHHHHhccCCHHHHHHH
Q 046631 619 AVLSACSY--------AGLVDEGLQIFDLMQQEYKIQPS-TEHY-----------------CCVADMLGRVGKVVEAYEF 672 (813)
Q Consensus 619 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~~ 672 (813)
.+..++.. .|++++|...|+++.+. .|+ .... ..++.+|.+.|++++|+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 66777777 89999999999999866 454 3333 5678999999999999999
Q ss_pred HHHh-CcCCC---hHHHHHHHHHHHHHh----------CCHHHHHHHHHHHhcCCCCC
Q 046631 673 VKEL-GEEGN---VLEIWGSLLGSCRLH----------GHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 673 ~~~~-~~~~~---~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~ 716 (813)
++++ ...|+ ...++..++.++... |++++|+..++++++..|++
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 9987 33343 566888888888866 88999999999999999987
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=7.9e-10 Score=98.20 Aligned_cols=123 Identities=7% Similarity=-0.031 Sum_probs=105.1
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC
Q 046631 620 VLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 620 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 697 (813)
|...+...|++++|+..+.... ...|+ ...+..++.+|.+.|++++|++.+++. ...|+.+.+|..++.++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445667889999999888776 44564 667778999999999999999999986 677888889999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHH-HHHHHH
Q 046631 698 HSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKV-RKEMRE 747 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 747 (813)
++++|+..++++++++|++ +..+..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQ--KDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999887765 577774
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.01 E-value=6.7e-09 Score=104.24 Aligned_cols=202 Identities=13% Similarity=0.034 Sum_probs=145.2
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C--CHhHHHHHHHHHHhcCChHHH
Q 046631 528 NIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE-------K--NSVTYTTMILGYGQHGMSERA 598 (813)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A 598 (813)
++++|...+... ...|...|++++|.+.|++..+ + ...+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777766554 4567788999999988886652 1 156889999999999999999
Q ss_pred HHHHHHHHhCCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHH
Q 046631 599 LSLFRSMKGCGI---EPD--AITFVAVLSACSYA-GLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 599 ~~~~~~m~~~g~---~p~--~~~~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 668 (813)
+..+++.++... .+. ..++..+...|... |++++|+..|++..+.+.-..+ ..++..++..|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998876311 111 24788888899986 9999999999998864211111 4578899999999999999
Q ss_pred HHHHHHHhCc-CCCh-------HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchh-----HHHHHHHHH--hcC
Q 046631 669 AYEFVKELGE-EGNV-------LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGY-----HVLLSNIYA--EEG 733 (813)
Q Consensus 669 A~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-----~~~l~~~~~--~~g 733 (813)
|+..+++... .|+. ...|..++.++...|++++|...++++++++|.. ... +..++..|. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF--ADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--CCcHHHHHHHHHHHHHHcCCHH
Confidence 9999998732 2221 1257788889999999999999999999999986 332 233445554 456
Q ss_pred CcHHHHHHHHHHH
Q 046631 734 NWENVDKVRKEMR 746 (813)
Q Consensus 734 ~~~~A~~~~~~m~ 746 (813)
++++|...++++.
T Consensus 255 ~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 255 QLSEHCKEFDNFM 267 (292)
T ss_dssp THHHHHHHHTTSS
T ss_pred HHHHHHHHhccCC
Confidence 7888888775544
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.99 E-value=4.8e-09 Score=118.54 Aligned_cols=168 Identities=10% Similarity=-0.023 Sum_probs=85.4
Q ss_pred ccCCChHHHHHHHHHHHH-------cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcC
Q 046631 524 NPMGNIELGKQLHGFSIR-------YLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP---EKNSVTYTTMILGYGQHG 593 (813)
Q Consensus 524 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 593 (813)
...|++++|...++...+ ...+.+...+..+...|.+.|++++|.+.|+++. ..+...|..+..+|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 455666666666665551 1112233445555555555555555555555544 124455555555555555
Q ss_pred ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHH
Q 046631 594 MSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYE 671 (813)
Q Consensus 594 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 671 (813)
++++|+..|++..+ ..| +...+..+..++...|++++ ...|+++.+. .|+ ...|..++.+|.+.|++++|++
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555 233 23344555555555555555 5555555532 343 4555555555555555555555
Q ss_pred HHHHh-CcCCChHHHHHHHHHHHHHhC
Q 046631 672 FVKEL-GEEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 672 ~~~~~-~~~~~~~~~~~~l~~~~~~~g 697 (813)
.++++ ...|+...+|..+..++...+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccC
Confidence 55554 234444445555555544433
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.97 E-value=1.6e-08 Score=101.47 Aligned_cols=163 Identities=9% Similarity=0.012 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----HhHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCC-----
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIPE-----KN----SVTYTTMILGYGQH-GMSERALSLFRSMKGCGIEPD----- 613 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~----- 613 (813)
.+|+.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChH
Confidence 3455566666666666666666655442 11 34678888888886 9999999999988763 221
Q ss_pred --HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC---h-----hHHHHHHHHHhccCCHHHHHHHHHHhC-cCCCh
Q 046631 614 --AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS---T-----EHYCCVADMLGRVGKVVEAYEFVKELG-EEGNV 682 (813)
Q Consensus 614 --~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 682 (813)
..++..+...+...|++++|+..|++..+. .|+ . ..|..++.++...|++++|+..+++.. ..|..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKS---SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 246778888999999999999999998865 332 2 157788889999999999999999873 34433
Q ss_pred HH-----HHHHHHHHHH--HhCCHHHHHHHHHHHhcCCCCC
Q 046631 683 LE-----IWGSLLGSCR--LHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 683 ~~-----~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.. .+..++.++. ..+++++|+..++++..++|..
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 22 3445556664 3467888999888888877764
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.96 E-value=3.1e-09 Score=106.11 Aligned_cols=225 Identities=13% Similarity=0.034 Sum_probs=161.7
Q ss_pred HhCCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHc------CC-CCchhHHHHH
Q 046631 489 TQNGLLEEAFVAFRQMLEH-------NVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRY------LL-DQNVFVGTSL 554 (813)
Q Consensus 489 ~~~~~~~~A~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 554 (813)
...|++++|+..|++..+. .......++..+...+...|++++|...+..+.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776552 21223457788889999999999999999988765 22 2345678899
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCC-HHH
Q 046631 555 IDMYSKSGVINYAANVFAKIPE----------K-NSVTYTTMILGYGQHGMSERALSLFRSMKGC------GIEPD-AIT 616 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~ 616 (813)
...|...|++++|.+.|++..+ | ...+|..+...|...|++++|+..++++.+. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999988752 1 3567888999999999999999999999984 11333 347
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhc------CCCCC-hhHHHHHHHHHhccC------CHHHHHHHHHHhCc-CCCh
Q 046631 617 FVAVLSACSYAGLVDEGLQIFDLMQQEY------KIQPS-TEHYCCVADMLGRVG------KVVEAYEFVKELGE-EGNV 682 (813)
Q Consensus 617 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~-~~~~ 682 (813)
+..+...+...|++++|..+++++.+.. ...+. ...+..+...+...+ .+.++...++.... .+..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888899999999999999999987641 12332 444555554444333 35555555665543 3455
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q 046631 683 LEIWGSLLGSCRLHGHSELAEVVAKKLLEMD 713 (813)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 713 (813)
..++..+...+...|++++|...++++++..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5689999999999999999999999998753
No 96
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.95 E-value=5.5e-09 Score=89.33 Aligned_cols=101 Identities=8% Similarity=0.034 Sum_probs=79.4
Q ss_pred CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhH
Q 046631 645 KIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYH 722 (813)
Q Consensus 645 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 722 (813)
-+.|+ ...+...+..|.+.|++++|++.|++. ...|..+.+|..++.++...|++++|+..++++++++|++ +..+
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~ 84 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--IKGY 84 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--hHHH
Confidence 45665 667777888888888888888888775 5566666688888888888888888888888888888887 7788
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 723 VLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
..++.+|...|++++|.+.+++..+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888888888774
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=1.8e-08 Score=87.43 Aligned_cols=126 Identities=21% Similarity=0.254 Sum_probs=71.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHH
Q 046631 618 VAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRL 695 (813)
Q Consensus 618 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~ 695 (813)
..+...+...|++++|..+++++.+. .| +...+..++..+...|++++|..+++++ ...|....+|..++..+..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 33444444555555555555554433 22 2444455555555555555555555554 2223333356666666666
Q ss_pred hCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 696 HGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 696 ~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.|++++|...++++++..|.+ +..+..++.+|...|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRS--AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 666666666666666666665 566666667777777777777777666543
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=8.6e-08 Score=90.76 Aligned_cols=173 Identities=9% Similarity=-0.014 Sum_probs=141.5
Q ss_pred HHHHHhhCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHHH
Q 046631 567 AANVFAKIP-EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAG----LVDEGLQIFDLMQ 641 (813)
Q Consensus 567 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g----~~~~a~~~~~~~~ 641 (813)
|.+.|++.. ..+..++..|...|...+++++|+..|++..+.| +...+..|...|.. + +.++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444454443 3477888888888888999999999999998865 55677777777777 6 8999999999987
Q ss_pred HhcCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHhCcCCCh---HHHHHHHHHHHHH----hCCHHHHHHHHHHHh
Q 046631 642 QEYKIQPSTEHYCCVADMLGR----VGKVVEAYEFVKELGEEGNV---LEIWGSLLGSCRL----HGHSELAEVVAKKLL 710 (813)
Q Consensus 642 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 710 (813)
+. -+...+..|+.+|.. .+++++|++++++....++. +.++..|...|.. .++.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 54 267888899999987 88999999999999777662 5589999999988 789999999999999
Q ss_pred cCCCCCCCchhHHHHHHHHHhc-C-----CcHHHHHHHHHHHHCCC
Q 046631 711 EMDTRNSMPGYHVLLSNIYAEE-G-----NWENVDKVRKEMRERGL 750 (813)
Q Consensus 711 ~~~p~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 750 (813)
+. |.+ +..+..|+.+|... | ++++|..++++..+.|.
T Consensus 157 ~~-~~~--~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRT--GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCT--THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCC--HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 555 67888999998764 3 89999999999987763
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.92 E-value=1.2e-08 Score=102.05 Aligned_cols=177 Identities=9% Similarity=-0.007 Sum_probs=138.3
Q ss_pred HHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046631 565 NYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQE 643 (813)
Q Consensus 565 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 643 (813)
+...+.+......+...+..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3344444444445566777788888899999999999999988 4554 457788888899999999999999888643
Q ss_pred cCCCCChhHH-HHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchh
Q 046631 644 YKIQPSTEHY-CCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGY 721 (813)
Q Consensus 644 ~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 721 (813)
.|+.... ......+.+.|+.++|+..+++. ...|+...++..+...+...|++++|+..++++++.+|++.....
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 5663333 33334466778888888887775 567877779999999999999999999999999999988644667
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 722 HVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 722 ~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
+..++.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 8889999999999999998887765
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=4.6e-08 Score=84.73 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADM 659 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 659 (813)
+|..+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|..+++++.+. .| +...+..++.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 56777888888888888888888888753 335567777888888889999999999888765 34 47778888889
Q ss_pred HhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 660 LGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 660 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+...|++++|.+.++++ ...|....+|..++..+...|++++|...++++++.+|.
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999988876 334555558888889999999999999999999888775
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=7.5e-09 Score=94.92 Aligned_cols=158 Identities=11% Similarity=0.023 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYA 627 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 627 (813)
+..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..+++.... .|+...+ .+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~------- 78 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SL------- 78 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HH-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HH-------
Confidence 34445556666666666666666552 24555556666666666666666666555442 2222211 11
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHH-HhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHH
Q 046631 628 GLVDEGLQIFDLMQQEYKIQPSTEHYCCVADM-LGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVV 705 (813)
Q Consensus 628 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 705 (813)
+... +...+...+|+..+++. ...|+.+..|..+...+...|++++|...
T Consensus 79 ----------------------------~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~ 130 (176)
T 2r5s_A 79 ----------------------------IAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL 130 (176)
T ss_dssp ----------------------------HHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------------HHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 1111 01111112344445443 44566666888888888888888888888
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 706 AKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 706 ~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
++++++.+|+...+..+..++.+|...|+.++|...+++..
T Consensus 131 ~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 131 LWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 88888888875324577888888888999988888887765
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=2.1e-08 Score=94.71 Aligned_cols=122 Identities=14% Similarity=0.012 Sum_probs=67.1
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC
Q 046631 620 VLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 620 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 697 (813)
+..++...|++++|+..|++..+. .|+ ...+..++.+|...|++++|+..++++ ...|+.+.+|..++..+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK---APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 555666666666666666666643 453 566666666666666666666666664 445555556666666655443
Q ss_pred C--HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 698 H--SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 698 ~--~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+ .+.+...++++....|. ...+..++.++...|++++|...+++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKM---QYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHC---CCCHH---HHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 23344444444332221 12233455556666666666666666663
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.89 E-value=7.9e-09 Score=91.12 Aligned_cols=102 Identities=9% Similarity=-0.052 Sum_probs=93.0
Q ss_pred CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhH
Q 046631 645 KIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYH 722 (813)
Q Consensus 645 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 722 (813)
.+.|+ ...+..++..+.+.|++++|+..|+++ ...|+.+..|..++.++...|++++|+..++++++++|++ +..+
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~--~~~~ 107 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND--YTPV 107 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC--CHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC--cHHH
Confidence 56775 778889999999999999999999987 5678777799999999999999999999999999999999 9999
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 723 VLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..++.+|...|++++|...+++..+.
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999864
No 104
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.89 E-value=2e-07 Score=91.12 Aligned_cols=240 Identities=8% Similarity=0.021 Sum_probs=161.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 046631 486 AGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVIN 565 (813)
Q Consensus 486 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 565 (813)
.-..-.|.+..++.-..++.. .........+.+++...|+.... ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 445567888888874333221 12223333445666666655421 11223333344443333 322
Q ss_pred HHHHHHhhCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046631 566 YAANVFAKIP---EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVDEGLQIFDLMQ 641 (813)
Q Consensus 566 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 641 (813)
|...|++.. .++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777665 2456667788899999999999999999998765323 34477788889999999999999999998
Q ss_pred HhcCCCC-----ChhHHHHHHHH--Hhc--cCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q 046631 642 QEYKIQP-----STEHYCCVADM--LGR--VGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM 712 (813)
Q Consensus 642 ~~~~~~p-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 712 (813)
+. .| +-.+...|+.+ ... .+++++|..+|+++...+.....-..|+.++.+.|++++|+..++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55 67 34444555544 333 34999999999999655432112233444888999999999999988776
Q ss_pred ----------CCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 713 ----------DTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 713 ----------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
+|++ +.++..++.+....|+ +|.++++++++..
T Consensus 241 ~p~~~~k~~~~p~~--~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYK--PTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSH--HHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCC--HHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 4777 8888677667777787 8999999999653
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.88 E-value=4.8e-08 Score=92.23 Aligned_cols=157 Identities=11% Similarity=0.053 Sum_probs=118.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHH----------------HHHHHHhcCChHHHHHHHHHHHhCCCCC-CH
Q 046631 555 IDMYSKSGVINYAANVFAKIPE--K-NSVTYTT----------------MILGYGQHGMSERALSLFRSMKGCGIEP-DA 614 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 614 (813)
...+...|++++|...|++..+ | +...|.. +..+|...|++++|+..|++.++. .| +.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH
Confidence 3345566666666666666542 2 3344444 889999999999999999999984 55 45
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCC--HHHHHHHHHHhCcCCChHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGK--VVEAYEFVKELGEEGNVLEIWGSLLG 691 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~l~~ 691 (813)
..+..+...+...|++++|...|++..+. .|+ ..++..++.+|...|. .+.+...++.....+.....|..++.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 68888999999999999999999999855 785 8899999999877664 45566666666433322225666777
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 692 SCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 692 ~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
++...|++++|+..+++++++.|+.
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCH
Confidence 8888899999999999999999974
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=2.3e-08 Score=111.13 Aligned_cols=159 Identities=9% Similarity=-0.058 Sum_probs=126.5
Q ss_pred cCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 046631 561 SGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVDEGLQI 636 (813)
Q Consensus 561 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~ 636 (813)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+. .| +...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998873 36789999999999999999999999999984 45 456888899999999999999999
Q ss_pred HHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh---CCHHHHHHHHHHHhc
Q 046631 637 FDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH---GHSELAEVVAKKLLE 711 (813)
Q Consensus 637 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 711 (813)
+++..+. .|+ ...+..++.+|.+.|++++|.+.+++. ...|+...++..+...+... |+.++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999865 574 889999999999999999999999986 55676667999999999999 999999999999999
Q ss_pred CCCCCCCchhHHHHH
Q 046631 712 MDTRNSMPGYHVLLS 726 (813)
Q Consensus 712 ~~p~~~~~~~~~~l~ 726 (813)
.+|.+ ...+..++
T Consensus 157 ~~p~~--~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGA--VEPFAFLS 169 (568)
T ss_dssp HTCCC--SCHHHHTT
T ss_pred cCCcc--cChHHHhC
Confidence 99998 67776665
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=7.7e-09 Score=91.40 Aligned_cols=102 Identities=15% Similarity=0.061 Sum_probs=89.5
Q ss_pred CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhH
Q 046631 645 KIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYH 722 (813)
Q Consensus 645 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 722 (813)
.+.|+ ...+..++..+.+.|++++|+..++++ ...|+.+..|..++.++...|++++|+..+++++.++|++ +..+
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~ 92 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE--PRFP 92 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--THHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--chHH
Confidence 55664 777888899999999999999999886 5567777789999999999999999999999999999998 8999
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 723 VLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..++.+|...|++++|.+.+++..+.
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998864
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.83 E-value=4.8e-07 Score=89.64 Aligned_cols=191 Identities=13% Similarity=0.102 Sum_probs=130.3
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHhhCC---CCCHhHHHHHHHHH----Hhc---CChHHHHHHHHHHHhCCCCCCHHHHH
Q 046631 551 GTSLIDMYSKSG--VINYAANVFAKIP---EKNSVTYTTMILGY----GQH---GMSERALSLFRSMKGCGIEPDAITFV 618 (813)
Q Consensus 551 ~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~ 618 (813)
++.--..+...| ++++++++++.+. ..+..+|+.-...+ ... +++++++.+++++.+.. +-+...|.
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~ 148 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWS 148 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 333334444444 5666666666554 22445555544444 344 67788888888888742 33455666
Q ss_pred HHHHHHhccCcHH--HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCC------HHHHHHHHHHh-CcCCChHHHHHH
Q 046631 619 AVLSACSYAGLVD--EGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGK------VVEAYEFVKEL-GEEGNVLEIWGS 688 (813)
Q Consensus 619 ~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~~~~~~~~~~ 688 (813)
.-.-.+.+.|.++ +++++++++.+. .| +...|+.-..++.+.|. ++++++.++++ ...|....+|+.
T Consensus 149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y 225 (306)
T 3dra_A 149 YRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNY 225 (306)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHH
Confidence 6666666667766 888888888755 45 46777777777777666 78888887765 566766668888
Q ss_pred HHHHHHHhCCH-HHHHHHHHHHhcCC---CCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 689 LLGSCRLHGHS-ELAEVVAKKLLEMD---TRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 689 l~~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+...+.+.|+. +....+++++++++ |.+ +..+..++++|.+.|+.++|.++++.+.+
T Consensus 226 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 226 LLGIHERFDRSITQLEEFSLQFVDLEKDQVTS--SFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888888764 44666778777766 666 77888888999888999999999988875
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=1.1e-07 Score=91.14 Aligned_cols=183 Identities=15% Similarity=0.022 Sum_probs=132.7
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-H---hHHHH
Q 046631 513 VVTIASVLPACNPMGNIELGKQLHGFSIRYLLD-Q-NVFVGTSLIDMYSKSGVINYAANVFAKIP--EKN-S---VTYTT 584 (813)
Q Consensus 513 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~---~~~~~ 584 (813)
...+..+...+...|++++|...++.+.+.... + ....+..+..+|.+.|++++|...|+++. .|+ . .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344556667788899999999999999986422 2 24577888999999999999999999876 232 2 25555
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcC
Q 046631 585 MILGYGQ------------------HGMSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYK 645 (813)
Q Consensus 585 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 645 (813)
+..++.. .|++++|+..|+++++. .|+.. ....... . ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHH-----
Confidence 5666554 57899999999999984 56543 2221111 0 0111111
Q ss_pred CCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCCh---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 646 IQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNV---LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 646 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
......++..|.+.|++++|+..++++ ...|+. ..++..++.++.+.|+.++|...++++....|++
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 112345788899999999999999987 333443 3578999999999999999999999999998886
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=5e-08 Score=83.29 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=95.5
Q ss_pred CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHH
Q 046631 610 IEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIW 686 (813)
Q Consensus 610 ~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ 686 (813)
+.|+.. .+......+.+.|++++|++.|++..+. .|+ ...|..++.+|.+.|++++|++.+++. ...|+...+|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 455543 5677778888999999999999988854 674 888899999999999999999998886 5567777799
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 687 GSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 687 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
..++.++...|++++|+..++++++++|++ +..+..|+++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~--~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSN--EEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCC--HHHHHHHHHh
Confidence 999999999999999999999999999998 7777766654
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=9.3e-08 Score=106.17 Aligned_cols=157 Identities=10% Similarity=-0.051 Sum_probs=99.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 046631 526 MGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLF 602 (813)
Q Consensus 526 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 602 (813)
.|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366777777777766542 23456777778888888888888888877653 35677888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc---CCHHHHHHHHHHh-C
Q 046631 603 RSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRV---GKVVEAYEFVKEL-G 677 (813)
Q Consensus 603 ~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~ 677 (813)
++..+.. +.+...+..+..++...|++++|.+.+++..+. .|+ ...+..++.++... |++++|.+.+++. .
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 8887742 223457777777888888888888888887754 454 67777788888888 8888888887775 3
Q ss_pred cCCChHHHHH
Q 046631 678 EEGNVLEIWG 687 (813)
Q Consensus 678 ~~~~~~~~~~ 687 (813)
..|.....|.
T Consensus 157 ~~p~~~~~~~ 166 (568)
T 2vsy_A 157 QGVGAVEPFA 166 (568)
T ss_dssp HTCCCSCHHH
T ss_pred cCCcccChHH
Confidence 3343332343
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=1.3e-07 Score=95.48 Aligned_cols=221 Identities=10% Similarity=-0.000 Sum_probs=148.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 046631 492 GLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVF 571 (813)
Q Consensus 492 ~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 571 (813)
|++++|.+++++..+.. +.. .+...++++.|...+..+ ...|...|++++|...|
T Consensus 5 ~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 55667777777665431 110 011145666666665443 44566777877777777
Q ss_pred hhCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHhccCcHHHHHHHH
Q 046631 572 AKIPE-----KN----SVTYTTMILGYGQHGMSERALSLFRSMKGCGI---EPD--AITFVAVLSACSYAGLVDEGLQIF 637 (813)
Q Consensus 572 ~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~a~~~~g~~~~a~~~~ 637 (813)
.+..+ .+ ..+|+.+...|...|++++|+..|++.++.-. .+. ..++..+...|.. |++++|+..|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 66542 11 45788888899999999999999998765311 122 2467778888888 9999999999
Q ss_pred HHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHhC----cCCC---hHHHHHHHHHHHHHhCCHHHHHHHH
Q 046631 638 DLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKELG----EEGN---VLEIWGSLLGSCRLHGHSELAEVVA 706 (813)
Q Consensus 638 ~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~ 706 (813)
++..+.+.-..+ ..++..++.+|.+.|++++|++.+++.. ..+. ....+..++.++...|++++|...+
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988754211111 5678899999999999999999998862 2222 2236677777888889999999999
Q ss_pred HHHhcCCCCCCCch---hHHHHHHHHHhcCCcHHHHH
Q 046631 707 KKLLEMDTRNSMPG---YHVLLSNIYAEEGNWENVDK 740 (813)
Q Consensus 707 ~~~~~~~p~~~~~~---~~~~l~~~~~~~g~~~~A~~ 740 (813)
++++ +.|...... ....++..+ ..|+.+.+.+
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999 988752121 122344444 5677665555
No 113
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.78 E-value=1.4e-07 Score=106.54 Aligned_cols=168 Identities=9% Similarity=-0.052 Sum_probs=111.1
Q ss_pred HhcCCHHHHHHHHhhCC-----------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhc
Q 046631 559 SKSGVINYAANVFAKIP-----------EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSY 626 (813)
Q Consensus 559 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~ 626 (813)
...|++++|.+.|++.. ..+...|..+...|...|++++|+..|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 55677777777776654 234566777777777777777777777777763 33 34466666667777
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHH
Q 046631 627 AGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEV 704 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 704 (813)
.|++++|...|+++.+. .|+ ...+..++.+|.+.|++++ ++.++++ ...|+...+|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777643 563 6667777777777777777 7666665 4456555577777777777777777777
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 705 VAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 705 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
.++++++++|++ +..+..++.+|...|+
T Consensus 556 ~~~~al~l~P~~--~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHF--TTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTH--HHHHHHHHHHTC----
T ss_pred HHHhhcccCccc--HHHHHHHHHHHHccCC
Confidence 777777777776 6666667666655443
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=8.8e-07 Score=88.76 Aligned_cols=166 Identities=6% Similarity=-0.054 Sum_probs=125.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhH
Q 046631 582 YTTMILGYGQHGMSERALSLFRSMKGCGI-EPDAI----TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEH 652 (813)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 652 (813)
+...+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++.+...-.++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 33446778889999999999999887422 22211 2334566677788999999999999874222223 347
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhC-------cC-CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC----CCch
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKELG-------EE-GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN----SMPG 720 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~ 720 (813)
++.++.+|...|++++|+..++++. .. +....++..++..|...|++++|...+++++++.+.. ..+.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8999999999999999999998863 11 1233478999999999999999999999998765332 1145
Q ss_pred hHHHHHHHHHhcCC-cHHHHHHHHHHHH
Q 046631 721 YHVLLSNIYAEEGN-WENVDKVRKEMRE 747 (813)
Q Consensus 721 ~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 747 (813)
.+..+|.+|.+.|+ +++|.+.+++..+
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 78889999999995 6999999988864
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=2.2e-07 Score=88.19 Aligned_cols=129 Identities=12% Similarity=-0.025 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHH
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVAD 658 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 658 (813)
..+..+...+...|++++|+..|++. +.|+...+..+...+...|++++|...+++..+. .|+ ...+..++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHH
Confidence 34455566666677777777776665 2455666666666666777777777777666643 343 566666666
Q ss_pred HHhccCCHHHHHHHHHHhC-cCCCh----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 659 MLGRVGKVVEAYEFVKELG-EEGNV----------------LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 659 ~~~~~g~~~~A~~~~~~~~-~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+|.+.|++++|++.+++.. ..|.. ..+|..++.++...|++++|...+++++++.|+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 6666666666666666652 22221 135666666666666666666666666666654
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.74 E-value=9.8e-08 Score=96.45 Aligned_cols=199 Identities=12% Similarity=0.045 Sum_probs=149.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 046631 526 MGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSM 605 (813)
Q Consensus 526 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 605 (813)
.|++++|..++++..+..-. . .+...+++++|...|.. ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 46778888888877664211 1 11115788888887654 467888999999999999988
Q ss_pred HhCCC---CC-C-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCC--CC--hhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 606 KGCGI---EP-D-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQ--PS--TEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 606 ~~~g~---~p-~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
.+... .+ . ..+|..+...|...|++++|+..|++..+.+.-. |. ..++..++.+|.+ |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 76311 11 1 2378888889999999999999999887553111 21 5678899999999 9999999999886
Q ss_pred C----cCCC---hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC----chhHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 677 G----EEGN---VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM----PGYHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 677 ~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
. ..++ ...++..+...+...|++++|+..+++++++.|.... ...+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 2222 2347889999999999999999999999988765411 125666778888899999999999998
Q ss_pred H
Q 046631 746 R 746 (813)
Q Consensus 746 ~ 746 (813)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 8
No 117
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.74 E-value=8.7e-08 Score=84.06 Aligned_cols=102 Identities=14% Similarity=0.026 Sum_probs=88.3
Q ss_pred CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhH
Q 046631 645 KIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYH 722 (813)
Q Consensus 645 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 722 (813)
.+.|+ ...+..++..+.+.|++++|+..++++ ...|+.+.+|..+..++...|++++|+..++++++++|++ +..+
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~ 89 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE--PRFP 89 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--THHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--cHHH
Confidence 44564 667777888899999999999998886 5667777789999999999999999999999999999998 8999
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 723 VLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 723 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
..++.+|...|++++|.+.+++..+.
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999988854
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=1.5e-07 Score=86.03 Aligned_cols=154 Identities=12% Similarity=0.063 Sum_probs=99.3
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHH-HHhc
Q 046631 516 IASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--KNSVTYTTMILG-YGQH 592 (813)
Q Consensus 516 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~ 592 (813)
+......+...|++++|...++...+.. +.+...+..+..+|.+.|++++|...|+++.. |+...+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 4456667888999999999999876643 23567888999999999999999999999874 344333222211 1222
Q ss_pred CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhccCCHHH
Q 046631 593 GMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS---TEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 593 g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~ 668 (813)
++..+|+..+++..+ ..|+ ...+..+...+...|++++|...|+++.+ ..|+ ...+..++.++...|+.++
T Consensus 88 ~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 88 AAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred cccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHhCCCCc
Confidence 233345666666665 3343 44556666666666666666666666653 3443 3455666666666666666
Q ss_pred HHHHHHH
Q 046631 669 AYEFVKE 675 (813)
Q Consensus 669 A~~~~~~ 675 (813)
|...+++
T Consensus 163 A~~~y~~ 169 (176)
T 2r5s_A 163 IASKYRR 169 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=4.8e-07 Score=90.68 Aligned_cols=168 Identities=6% Similarity=-0.091 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CCC--h
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA-----ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKI--QPS--T 650 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~ 650 (813)
..+...+..+...|++++|++.+++..+....... ..+..+...+...|++++|...+++..+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34556677888899999999999888875322111 12334555677889999999999988753111 112 4
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhC----cCCC----hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC----CC
Q 046631 651 EHYCCVADMLGRVGKVVEAYEFVKELG----EEGN----VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN----SM 718 (813)
Q Consensus 651 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~ 718 (813)
.+++.++..|...|++++|+..++++. ..++ ...++..++..|...|++++|...+++++++.+.. ..
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 588899999999999999999998863 2232 22488999999999999999999999998764321 11
Q ss_pred chhHHHHHHHHHhcCCcHHH-HHHHHHHHH
Q 046631 719 PGYHVLLSNIYAEEGNWENV-DKVRKEMRE 747 (813)
Q Consensus 719 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 747 (813)
+..+..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45678899999999999999 777887764
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.70 E-value=1.8e-07 Score=93.24 Aligned_cols=159 Identities=12% Similarity=-0.016 Sum_probs=113.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-H
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP--EK-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVL-S 622 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~ 622 (813)
+...+..+...+.+.|++++|...|+++. .| +...+..+...+...|++++|+..++++.. ..|+........ .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHHH
Confidence 44455666677777888888888887765 23 567777888888888888888888887766 345544332222 2
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCCh--HHHHHHHHHHHHHhCC
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNV--LEIWGSLLGSCRLHGH 698 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~--~~~~~~l~~~~~~~g~ 698 (813)
.+...+..++|...+++.... .|+ ...+..++.+|...|++++|++.+.++ ...|+. ..++..++..+...|+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 355666677778878777754 564 778888888888888888888888776 444544 4578888888888888
Q ss_pred HHHHHHHHHHHh
Q 046631 699 SELAEVVAKKLL 710 (813)
Q Consensus 699 ~~~a~~~~~~~~ 710 (813)
.++|...+++.+
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 888888877765
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.70 E-value=6.7e-07 Score=84.54 Aligned_cols=174 Identities=10% Similarity=-0.110 Sum_probs=131.9
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCHhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 046631 532 GKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE-KNSVTYTTMILGYGQHG----MSERALSLFRSMK 606 (813)
Q Consensus 532 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 606 (813)
|...+....+.| ++..+..|...|...+++++|.+.|++..+ .+..++..|...|.. + ++++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444455555443 556677777778888888888888887663 467778888888777 6 8899999999988
Q ss_pred hCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhc----cCCHHHHHHHHHH
Q 046631 607 GCGIEPDAITFVAVLSACSY----AGLVDEGLQIFDLMQQEYKIQPS---TEHYCCVADMLGR----VGKVVEAYEFVKE 675 (813)
Q Consensus 607 ~~g~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 675 (813)
+.| +...+..|...|.. .+++++|..+|++..+. .|. +..+..|+.+|.. .+++++|+.++++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 755 55677777777776 78999999999888743 453 7888889999988 8899999999999
Q ss_pred hCcCCChHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHhcCCCC
Q 046631 676 LGEEGNVLEIWGSLLGSCRLH-G-----HSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 676 ~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p~ 715 (813)
....+..+..+..|...|... | +.++|...++++.+.+..
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 866543444788888887653 3 899999999999887643
No 122
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.69 E-value=3.5e-05 Score=82.76 Aligned_cols=124 Identities=17% Similarity=0.097 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACS-YAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVA 657 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 657 (813)
..|...+..+.+.++.+.|..+|++. .. ...+...|...+..-. ..++.+.|..+|+...+.+ |+ ...+...+
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~---~~~~~~~~~yi 361 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH---PDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---CCCHHHHHHHH
Confidence 56777777777888899999999998 32 1234444443222222 2336899999999998874 43 45566778
Q ss_pred HHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 658 DMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
+...+.|+.+.|..+++++.. ...+|...+..-..+|+.+.+..++++...
T Consensus 362 d~e~~~~~~~~aR~l~er~~k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLEK---TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSCC---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888899999999999999842 334899988888889999999888888764
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.64 E-value=2.2e-07 Score=79.40 Aligned_cols=97 Identities=8% Similarity=-0.093 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
...+..++..+.+.|++++|+..+++. ...|+.+.+|..++.++...|++++|+..++++++++|++ +..+..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHH
Confidence 456777888888999999999888876 4566666689999999999999999999999999999998 8899999999
Q ss_pred HHhcCCcHHHHHHHHHHHHC
Q 046631 729 YAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 729 ~~~~g~~~~A~~~~~~m~~~ 748 (813)
|...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999988854
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=4.7e-07 Score=81.73 Aligned_cols=127 Identities=9% Similarity=-0.022 Sum_probs=101.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSC 693 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~ 693 (813)
.+..+...+...|++++|...|++..+. .| +...+..++.++...|++++|++.+++. ...|....+|..++.++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4566666777888888888888887754 45 4777888888888888999988888776 44566666899999999
Q ss_pred HHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH--HHHHHhcCCcHHHHHHHHHHHH
Q 046631 694 RLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL--SNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 694 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
...|++++|...++++++..|.+ ...+..+ +..+...|++++|.+.+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHD--KDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999988 6666444 4448888999999999887754
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.63 E-value=1e-06 Score=83.37 Aligned_cols=125 Identities=10% Similarity=-0.066 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLV 630 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~ 630 (813)
+..+...+...|++++|.+.|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44556667777777777777777777777777777777777777777777777777642 23445677777777777777
Q ss_pred HHHHHHHHHHHHhcC-------------CCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 631 DEGLQIFDLMQQEYK-------------IQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 631 ~~a~~~~~~~~~~~~-------------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
++|...|++..+... ..|+ ...+..++.+|.+.|++++|.+.+++.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777765311 1111 266777777777777777777777775
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.62 E-value=2.2e-07 Score=85.13 Aligned_cols=120 Identities=11% Similarity=0.125 Sum_probs=90.0
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHH-HHHhCCH--
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGS-CRLHGHS-- 699 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~-~~~~g~~-- 699 (813)
...|++++|...+++..+. .| +...+..++.+|...|++++|+..++++ ...|+.+.+|..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 4567777788888777754 45 4777888888888888888888888776 3445555577778877 6777887
Q ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 700 ELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 700 ~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
++|...++++++.+|.+ +..+..++.+|...|++++|...++++.+..
T Consensus 98 ~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNE--ITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888887 7888888888888888888888888887653
No 127
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.62 E-value=6.6e-06 Score=81.45 Aligned_cols=226 Identities=9% Similarity=-0.010 Sum_probs=159.5
Q ss_pred CHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHH
Q 046631 460 LIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNG--LLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLH 536 (813)
Q Consensus 460 ~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 536 (813)
..++|++.++.+....| +...|+.--..+...+ +++++++.++.+...+ |...+
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~--------------------- 104 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQ--------------------- 104 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCH---------------------
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHH---------------------
Confidence 33566666666554455 4556777766676666 7777777777777642 33222
Q ss_pred HHHHHcCCCCchhHHHHHHHHH----Hhc---CCHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCChH--HHHHHHHH
Q 046631 537 GFSIRYLLDQNVFVGTSLIDMY----SKS---GVINYAANVFAKIP---EKNSVTYTTMILGYGQHGMSE--RALSLFRS 604 (813)
Q Consensus 537 ~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~ 604 (813)
+|+.-...+ .+. +++++++++++++. .+|..+|+.-...+.+.|.++ ++++.+++
T Consensus 105 -------------aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~ 171 (306)
T 3dra_A 105 -------------IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDK 171 (306)
T ss_dssp -------------HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 122221122 223 67788888888776 347778888888888888888 99999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCc------HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHH-HHHHHHHh
Q 046631 605 MKGCGIEPDAITFVAVLSACSYAGL------VDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVE-AYEFVKEL 676 (813)
Q Consensus 605 m~~~g~~p~~~~~~~ll~a~~~~g~------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~ 676 (813)
+++.. .-|...|+.-.....+.|. ++++++.++.++.. .| |...|+.+..++.+.|+..+ +.++.+++
T Consensus 172 ~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 172 VIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred HHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 99854 3345566666556666665 89999999998855 67 58889999999998887444 55677775
Q ss_pred Cc----CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc-CCCCCCCchhHHHHHH
Q 046631 677 GE----EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLE-MDTRNSMPGYHVLLSN 727 (813)
Q Consensus 677 ~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~~~l~~ 727 (813)
.. .+..+.++..++..+.+.|+.++|.++++.+.+ .+|.. ..++...+.
T Consensus 248 ~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir--~~yW~~~~~ 301 (306)
T 3dra_A 248 VDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIR--SNFWDYQIS 301 (306)
T ss_dssp EEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG--HHHHHHHHH
T ss_pred HhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHH--HHHHHHHHh
Confidence 32 244555899999999999999999999999996 79987 777665543
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=5.8e-06 Score=82.72 Aligned_cols=160 Identities=11% Similarity=-0.044 Sum_probs=121.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-----C----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHH
Q 046631 553 SLIDMYSKSGVINYAANVFAKIPEK-----N----SVTYTTMILGYGQHGMSERALSLFRSMKGCGIE-PD----AITFV 618 (813)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~ 618 (813)
..+..+...|++++|..++++..+. + ...+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788899999999999886531 1 113344666777788999999999999984322 22 22688
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcC----CCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhC-------cCCChHHHH
Q 046631 619 AVLSACSYAGLVDEGLQIFDLMQQEYK----IQPS-TEHYCCVADMLGRVGKVVEAYEFVKELG-------EEGNVLEIW 686 (813)
Q Consensus 619 ~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ 686 (813)
.+...|...|++++|..+++++.+... ..+. ..++..++.+|.+.|++++|++.+++.. .......+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888899999999999999999885321 1122 5588899999999999999999988751 223345589
Q ss_pred HHHHHHHHHhC-CHHHHHHHHHHHhcC
Q 046631 687 GSLLGSCRLHG-HSELAEVVAKKLLEM 712 (813)
Q Consensus 687 ~~l~~~~~~~g-~~~~a~~~~~~~~~~ 712 (813)
..++.++...| ++++|...+++++.+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999 569999999988754
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=4e-07 Score=78.53 Aligned_cols=115 Identities=13% Similarity=0.046 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGS 692 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~ 692 (813)
..+..+...+...|++++|...+++.. ...| +...+..++.+|...|++++|++.++++ ...|....+|..+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 355556666666666666666666665 3344 3666666777777777777777776665 3345555577777888
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 693 CRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 693 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
+...|++++|...++++++.+|.+ ...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSC--KEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGG--THHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhcC
Confidence 888888888888888888888877 7777777777766553
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.60 E-value=1.3e-07 Score=83.46 Aligned_cols=118 Identities=10% Similarity=-0.022 Sum_probs=94.1
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-C
Q 046631 601 LFRSMKGCGIEPDA-ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-G 677 (813)
Q Consensus 601 ~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 677 (813)
.|+++.. +.|+. ..+..+...+...|++++|...|++.... .| +...|..++.+|...|++++|++.++++ .
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444444 44543 35667777888899999999999988854 56 4888889999999999999999999886 4
Q ss_pred cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 678 EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 678 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
..|+.+.+|..++.++...|++++|+..+++++++.|++ +......
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~ 129 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX--PEFXELS 129 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC--GGGHHHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC--CcchHHH
Confidence 567666689999999999999999999999999999987 6664443
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.59 E-value=8.4e-07 Score=85.58 Aligned_cols=184 Identities=9% Similarity=-0.037 Sum_probs=138.1
Q ss_pred hcCCHHHHHHHHhhCC--CC-CHhHHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCCH---------------
Q 046631 560 KSGVINYAANVFAKIP--EK-NSVTYTTM-------ILGYGQHGMSERALSLFRSMKGCGIEPDA--------------- 614 (813)
Q Consensus 560 ~~g~~~~A~~~~~~~~--~~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 614 (813)
..++...|.+.|.++. .| ....|..+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 5788888999988877 33 56788887 5666666667777776666554 23321
Q ss_pred -------HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCCh---HH
Q 046631 615 -------ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNV---LE 684 (813)
Q Consensus 615 -------~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 684 (813)
.....+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..++.....++. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1234466678889999999999987763 3575337777888899999999999999877655433 23
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCC--CCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMD--TRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
++..++.++...|++++|+..++++.... |.. .+.....++.++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEAC-ARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 78889999999999999999999998543 331 14567788999999999999999999998653
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.58 E-value=6.8e-07 Score=76.69 Aligned_cols=116 Identities=13% Similarity=0.070 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGS 692 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~ 692 (813)
..+..+...+...|++++|...+++..+. .| +...+..++.++...|++++|++.+++. ...|+...+|..++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 35666666777777888888877777754 34 4677777888888888888888887775 3455555688888888
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCc
Q 046631 693 CRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNW 735 (813)
Q Consensus 693 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~ 735 (813)
+...|++++|...++++++..|++ +..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDN--ETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHHhcC
Confidence 888899999999999998888887 78888888888887765
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.58 E-value=2.5e-07 Score=94.57 Aligned_cols=144 Identities=15% Similarity=0.006 Sum_probs=104.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHH
Q 046631 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCV 656 (813)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 656 (813)
+...|..+...|.+.|++++|+..|++.++. .|+...+ ..+++..+ .| ....|..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~----------~~~~~~~~~nl 202 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKA----------QALRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHH----------HHHHHHHHHHH
Confidence 3456666666666666666666666666663 2322100 00111100 01 14678888
Q ss_pred HHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCc
Q 046631 657 ADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNW 735 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~ 735 (813)
+.+|.+.|++++|+..++++ ...|+...+|..+..++...|++++|+..++++++++|++ +..+..++.++.+.|++
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN--KAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHH
Confidence 88999999999999888886 5566666799999999999999999999999999999998 88999999999999999
Q ss_pred HHH-HHHHHHHH
Q 046631 736 ENV-DKVRKEMR 746 (813)
Q Consensus 736 ~~A-~~~~~~m~ 746 (813)
++| ..++++|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988 44666664
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.58 E-value=6.2e-07 Score=78.88 Aligned_cols=104 Identities=9% Similarity=-0.059 Sum_probs=91.3
Q ss_pred CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHH
Q 046631 610 IEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIW 686 (813)
Q Consensus 610 ~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ 686 (813)
+.|+.. .+..+...+.+.|++++|...|+++.+. .|+ ...|..++.+|.+.|++++|++.|++. ...|+.+.+|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 445443 6777788899999999999999999855 785 889999999999999999999999887 5677777799
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 687 GSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 687 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
..++.++...|++++|+..+++++++.|++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999985
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.57 E-value=5.2e-07 Score=74.91 Aligned_cols=102 Identities=9% Similarity=-0.013 Sum_probs=88.2
Q ss_pred CCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC--CCCchhH
Q 046631 647 QPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR--NSMPGYH 722 (813)
Q Consensus 647 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~ 722 (813)
.|+ ...+..++..+.+.|++++|...+++. ...|....+|..++..+...|++++|...++++++..|. + +..+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN--KDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC--HHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch--HHHH
Confidence 353 677888899999999999999998886 445666668999999999999999999999999999998 7 8889
Q ss_pred HHHHHHHHhc-CCcHHHHHHHHHHHHCCC
Q 046631 723 VLLSNIYAEE-GNWENVDKVRKEMRERGL 750 (813)
Q Consensus 723 ~~l~~~~~~~-g~~~~A~~~~~~m~~~~~ 750 (813)
..++.+|... |++++|.+.+++..+...
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 9999999999 999999999999986643
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=1.2e-06 Score=74.38 Aligned_cols=114 Identities=21% Similarity=0.247 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGS 692 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~ 692 (813)
..+..+...+...|++++|..+++++.+. .| +...+..++.++.+.|++++|..+++++ ...|....+|..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 45666666777777777777777777654 34 3667777777788888888888777775 3344445578888888
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcC
Q 046631 693 CRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEG 733 (813)
Q Consensus 693 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g 733 (813)
+...|++++|...++++++..|.+ +..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNN--AEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhcc
Confidence 888888888888888888888887 777777777765543
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.52 E-value=2.3e-07 Score=92.20 Aligned_cols=191 Identities=13% Similarity=-0.000 Sum_probs=131.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP--EK-NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLS 622 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 622 (813)
+...+..+...+.+.|++++|...|++.. .| +...|..+..+|...|++++|+..+++.++. .|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34556777788888999999999988775 33 7788889999999999999999999998884 454 557788888
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSEL 701 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 701 (813)
++...|++++|...|++..+. .|+ ...+...+....+.++...... .... ..+....+...+... ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEER-RIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHT-CCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHH-HHhhhHHHHHHHHHH--HHHHHHH
Confidence 899999999999999888754 332 1111112222221111111111 1111 223233244444332 2688999
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHhc-CCcHHHHHHHHHHHHC
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEE-GNWENVDKVRKEMRER 748 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 748 (813)
|.+.++++++.+|++ ......+..++.+. +++++|.++|+++.+.
T Consensus 154 A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDD--GHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCH--HHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccch--hhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999987 66666677777766 7789999999988764
No 138
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.52 E-value=3.1e-07 Score=77.64 Aligned_cols=96 Identities=16% Similarity=0.056 Sum_probs=82.1
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 651 EHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 651 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
..+..++..+.+.|++++|+..+++. ...|+...+|..++.++...|++++|+..++++++++|++ +..+..++.+|
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--IAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 34566778888899999999988886 5567777789999999999999999999999999999998 88889999999
Q ss_pred HhcCCcHHHHHHHHHHHHC
Q 046631 730 AEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 730 ~~~g~~~~A~~~~~~m~~~ 748 (813)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988854
No 139
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.50 E-value=1.3e-05 Score=80.09 Aligned_cols=220 Identities=10% Similarity=0.022 Sum_probs=137.8
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHH
Q 046631 487 GYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSG-VIN 565 (813)
Q Consensus 487 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~ 565 (813)
...+.+..++|++++.+++.. .|+..| +++.--..+...| .++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~yt----------------------------------aWn~R~~iL~~l~~~l~ 106 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYT----------------------------------VWQYRFSLLTSLNKSLE 106 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHH----------------------------------HHHHHHHHHHHTTCCHH
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHH----------------------------------HHHHHHHHHHHhhhhHH
Confidence 334445556777777777764 454433 2333333333444 366
Q ss_pred HHHHHHhhCC---CCCHhHHHHHHHHHHhc-C-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH--------H
Q 046631 566 YAANVFAKIP---EKNSVTYTTMILGYGQH-G-MSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVD--------E 632 (813)
Q Consensus 566 ~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~--------~ 632 (813)
+++++++.+. .++..+|+.-...+... + ++++++++++++.+.. .-|...|+.-...+.+.|.++ +
T Consensus 107 eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 107 DELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHH
Confidence 6666666554 23555666665555555 5 6777777777777642 223445544444444444444 7
Q ss_pred HHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCC-------HHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCH----
Q 046631 633 GLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGK-------VVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHS---- 699 (813)
Q Consensus 633 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~---- 699 (813)
++++++++.+. .| |...|+....++.+.+. ++++++.++++ ...|+...+|+.+.+.+.+.|+.
T Consensus 186 ELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 186 ELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccc
Confidence 88888888865 55 57788888888887776 68888888765 56776666898888888877653
Q ss_pred ----------------HHHHHHHHHHhcCC------CCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 700 ----------------ELAEVVAKKLLEMD------TRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 700 ----------------~~a~~~~~~~~~~~------p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.........++... +.. +....+|+++|.+.|+.++|.++++.+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV--PLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-CCCSSCCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccchhHHHHHHHHHhcccccccCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 23333444443332 233 667889999999999999999999998743
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.49 E-value=2.4e-06 Score=80.02 Aligned_cols=156 Identities=12% Similarity=-0.045 Sum_probs=97.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCC-ChhHHHHHHHHHhccCCH
Q 046631 591 QHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEY---KIQP-STEHYCCVADMLGRVGKV 666 (813)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~ 666 (813)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+.. +..| ....+..++.+|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644443321 11233456666666667777777777776665421 1122 255677777788888888
Q ss_pred HHHHHHHHHhC----cCC----ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC----CchhHHHHHHHHHhcCC
Q 046631 667 VEAYEFVKELG----EEG----NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS----MPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 667 ~~A~~~~~~~~----~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~~~l~~~~~~~g~ 734 (813)
++|.+.+++.. ..+ ....++..+...+...|++++|...++++++..+... ....+..++.+|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 88887776641 122 1233677788888888888888888888875432210 02235678888999999
Q ss_pred cHHHHHHHHHHHH
Q 046631 735 WENVDKVRKEMRE 747 (813)
Q Consensus 735 ~~~A~~~~~~m~~ 747 (813)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888764
No 141
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.47 E-value=2.4e-05 Score=84.07 Aligned_cols=374 Identities=10% Similarity=0.014 Sum_probs=190.3
Q ss_pred C-ChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCC-ChhHHHHHHHH
Q 046631 174 S-KYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLG-DYKSADVVYGL 251 (813)
Q Consensus 174 g-~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~ 251 (813)
| +++.|+.+|+.+.. .+-. |+++.+..+|++.... .|+...|..-+....+.+ ..+....+|+.
T Consensus 8 ~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 8 GVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp ----CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred CcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6 47788888776532 1111 7889999999988773 578888877777665544 23556777877
Q ss_pred HHHh-CCCCCCcHHHHHHHHHHHH----hcCChHHHHHHHhhcCCCCcchHHHHHHHHH---hCCCchHHHHHHHHHHHh
Q 046631 252 LVKL-GSEYVNDLFVASSAIFMYA----ELGCFDFARKIFDNCLERNTEVWNTMIGGYV---QNNHPVEAIELFVQVLEL 323 (813)
Q Consensus 252 ~~~~-~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~m~~ 323 (813)
++.. |.. ..+...|...+..+. ..|+++.++++|++...-....+..+-..|. +..+...+..++.+.
T Consensus 74 al~~vg~d-~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~--- 149 (493)
T 2uy1_A 74 TLGQFENY-WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT--- 149 (493)
T ss_dssp HHHHSTTC-TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH---
T ss_pred HHHHcCCC-cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH---
Confidence 7765 433 135677777777654 3467888888888775421111222211111 111122222222110
Q ss_pred CCCCCChhhHHHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCC--C-----cHHHH
Q 046631 324 DEIVFDDVTFLSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNG--L-----DDEGL 396 (813)
Q Consensus 324 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~ 396 (813)
...+..|+.++..+..... ..+...|...+.--...+ - .+.+.
T Consensus 150 -------------------~~~y~~ar~~y~~~~~~~~-----------~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~ 199 (493)
T 2uy1_A 150 -------------------LPIFQSSFQRYQQIQPLIR-----------GWSVKNAARLIDLEMENGMKLGGRPHESRMH 199 (493)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHH-----------TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHH
T ss_pred -------------------hHHHHHHHHHHHHHHHHHh-----------hccHHHHHHHHHHHhcCCccCcchhhHHHHH
Confidence 1223344444444433110 012334544444322211 1 23466
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHH-HHHHhhcCCCC
Q 046631 397 MLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTA-RQIFEKNDSGD 475 (813)
Q Consensus 397 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 475 (813)
.+|+++... .+.+...|...+.-+...|+.+.|..+++..++. +....++. .|+.....++. ..+.+......
T Consensus 200 ~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 200 FIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH----HHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhc
Confidence 788887775 3445667777777778888999999999998888 33223322 22222111111 11111110000
Q ss_pred -------C---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHhccCCChHHHHHHHHHHHHcC
Q 046631 476 -------R---DQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIAS--VLPACNPMGNIELGKQLHGFSIRYL 543 (813)
Q Consensus 476 -------~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~~ 543 (813)
+ ....|...+....+.+..+.|..+|.+. ... ..+...|.. .+... ..++.+.|..+++...+..
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY-ATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHC
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC
Confidence 0 1234555566555666677777777776 211 122223321 11111 1224666666666666542
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046631 544 LDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMK 606 (813)
Q Consensus 544 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 606 (813)
..+...+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++.
T Consensus 351 -~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 351 -PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1123344445555566666666666666653 234455555555455555555555555544
No 142
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.46 E-value=4.8e-07 Score=77.28 Aligned_cols=98 Identities=4% Similarity=-0.086 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC-----chhHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM-----PGYHV 723 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~~ 723 (813)
...+..++..+.+.|++++|++.|++. ...|+.+.+|..++.++...|++++|+..++++++++|++.. ...|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 445667888888888888888888875 556766668888888888888888888888888888776511 12566
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 724 LLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 724 ~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
.+|.+|...|++++|.+.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 678888888999999998888774
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.45 E-value=2.4e-06 Score=71.60 Aligned_cols=93 Identities=10% Similarity=-0.020 Sum_probs=47.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYA 730 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 730 (813)
.+..++..+...|++++|...+++. ...|..+.+|..++..+...|++++|...++++++..|.+ +..+..++.+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--HHHHHHHHHHHH
Confidence 3444444555555555555555443 2233333345555555555555555555555555555554 455555555555
Q ss_pred hcCCcHHHHHHHHHHH
Q 046631 731 EEGNWENVDKVRKEMR 746 (813)
Q Consensus 731 ~~g~~~~A~~~~~~m~ 746 (813)
..|++++|.+.+++..
T Consensus 84 ~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5555555555555554
No 144
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.45 E-value=1.3e-06 Score=78.47 Aligned_cols=117 Identities=10% Similarity=0.053 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhCc-------------------CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKELGE-------------------EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLL 710 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 710 (813)
...+...+..+.+.|++++|+..|++... .|....+|..+..++.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34455566666666666666666665421 34444589999999999999999999999999
Q ss_pred cCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECCEEEEEecCCCCCCChH-HHHHHHHHHH
Q 046631 711 EMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSH-KIYEMLERLA 789 (813)
Q Consensus 711 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~ 789 (813)
+++|.+ +..+..++.+|...|++++|...+++..+. +|... .+...+..+.
T Consensus 91 ~~~p~~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------------------------~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 91 KREETN--EKALFRRAKARIAAWKLDEAEEDLKLLLRN--------------------------HPAAASVVAREMKIVT 142 (162)
T ss_dssp HHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CGGGHHHHHHHHHHHH
T ss_pred hcCCcc--hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHH
Confidence 999998 999999999999999999999999998853 34444 5666777766
Q ss_pred HHHHH
Q 046631 790 MEMRN 794 (813)
Q Consensus 790 ~~~~~ 794 (813)
.++.+
T Consensus 143 ~~~~~ 147 (162)
T 3rkv_A 143 ERRAE 147 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.45 E-value=1.6e-06 Score=79.35 Aligned_cols=130 Identities=9% Similarity=0.106 Sum_probs=103.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH-HhccCCH-
Q 046631 590 GQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADM-LGRVGKV- 666 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~- 666 (813)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+. .| +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 35678888988998888742 345567888888999999999999999998865 45 47788888888 7789998
Q ss_pred -HHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 667 -VEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 667 -~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
++|...++++ ...|+...+|..+...+...|++++|...++++++..|.+ +....++
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~ 155 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR--INRTQLV 155 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT--SCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--ccHHHHH
Confidence 9999999886 4566666689999999999999999999999999999997 5544433
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.44 E-value=1.7e-05 Score=79.20 Aligned_cols=163 Identities=11% Similarity=-0.058 Sum_probs=120.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CC------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--HH
Q 046631 550 VGTSLIDMYSKSGVINYAANVFAKIPE---KN------SVTYTTMILGYGQHGMSERALSLFRSMKGCGI---EPD--AI 615 (813)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 615 (813)
.+...+..+...|++++|.+.+++..+ .. ...+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 345567778889999999988875431 11 12344466667788999999999999886421 122 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCCHHHHHHHHHHhCc-------CCChH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-----TEHYCCVADMLGRVGKVVEAYEFVKELGE-------EGNVL 683 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~ 683 (813)
+++.+...|...|++++|..+++++.+.....|+ ..++..++.+|.+.|++++|++.+++... .....
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999998743222333 26888999999999999999999887521 11234
Q ss_pred HHHHHHHHHHHHhCCHHHH-HHHHHHHhcC
Q 046631 684 EIWGSLLGSCRLHGHSELA-EVVAKKLLEM 712 (813)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 712 (813)
.+|..++.++...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5889999999999999999 7778877653
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.44 E-value=1.1e-06 Score=76.80 Aligned_cols=106 Identities=13% Similarity=-0.027 Sum_probs=86.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSC 693 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~ 693 (813)
.+..+...+...|++++|...|+++... .| +...|..++.+|.+.|++++|+..+++. ...|+.+.+|..++.++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4556666778888888998888888754 56 4778888888999999999999988886 45666666888999999
Q ss_pred HHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 046631 694 RLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLS 726 (813)
Q Consensus 694 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~ 726 (813)
...|++++|...+++++++.|++ +.......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~ 127 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQ--PAHEALAA 127 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTC--GGGHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC--cchHHHHH
Confidence 99999999999999999999987 76655543
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.44 E-value=1.2e-06 Score=78.96 Aligned_cols=107 Identities=10% Similarity=-0.040 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHH
Q 046631 614 AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLG 691 (813)
Q Consensus 614 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~ 691 (813)
...+..+...+...|++++|+..|++..+. .| +...|..++.+|.+.|++++|+..+++. ...|+...+|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 346667777778888888888888887754 46 4777788888888888888888887775 455665667888888
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 046631 692 SCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 692 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
++...|++++|+..++++++++|++ +..+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~ 119 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNG--GSDAMKR 119 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSS--CCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCc--hHHHHHH
Confidence 8888888888888888888888877 5544433
No 149
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.43 E-value=1.8e-06 Score=74.88 Aligned_cols=99 Identities=14% Similarity=0.003 Sum_probs=85.9
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHH
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSN 727 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~ 727 (813)
+...+..++..+...|++++|+..+++. ...|+.+.+|..++.++...|++++|...++++++++|++ +..+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh--HHHHHHHHH
Confidence 4778888888899999999999888875 4566666689999999999999999999999999999998 888999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHCC
Q 046631 728 IYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 728 ~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
+|...|++++|...+++..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 9999999999999999888653
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.43 E-value=2.9e-06 Score=81.89 Aligned_cols=130 Identities=9% Similarity=-0.052 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHH
Q 046631 582 YTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS--TEHYCCVADM 659 (813)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 659 (813)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..++.+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566777788888888888777763 455444445555677888888888888754321 0 111 3367778888
Q ss_pred HhccCCHHHHHHHHHHhCcCCC----hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 660 LGRVGKVVEAYEFVKELGEEGN----VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 660 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+.+.|++++|+..+++....+. .++.+..+..++.+.|+.++|...+++++..+|+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 8888999999888888743332 4557888888889999999999999999888886
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.41 E-value=2.6e-06 Score=72.59 Aligned_cols=108 Identities=10% Similarity=-0.025 Sum_probs=76.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSC 693 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~ 693 (813)
.+..+...+...|++++|+..|++..+. .| +...|..++.+|.+.|++++|+..+++. ...|+...+|..++.++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4555666667777777777777777644 45 3677777777777778888887777765 44566566788888888
Q ss_pred HHhCCHHHHHHHHHHHhcCC------CCCCCchhHHHHHHH
Q 046631 694 RLHGHSELAEVVAKKLLEMD------TRNSMPGYHVLLSNI 728 (813)
Q Consensus 694 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~~~l~~~ 728 (813)
...|++++|...++++++++ |.+ +.....+..+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~--~~~~~~l~~~ 121 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSA--REIDQLYYKA 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTH--HHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhH--HHHHHHHHHH
Confidence 88888888888888888887 665 5555555443
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=5.5e-06 Score=69.30 Aligned_cols=109 Identities=16% Similarity=0.115 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGS 692 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~ 692 (813)
..+..+...+...|++++|...+++.... .| +...+..++.++.+.|++++|...+++. ...|..+.+|..++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 35556666777777888888877777654 45 4677777888888888888888887775 3455555588888888
Q ss_pred HHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 693 CRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 693 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
+...|++++|...++++++.+|.+ +..+..++.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANN--PQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCC--HHHHHHHHHh
Confidence 888899999999999999888887 6666666554
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.40 E-value=2.9e-06 Score=79.44 Aligned_cols=154 Identities=12% Similarity=0.001 Sum_probs=102.4
Q ss_pred hcCCHHHHHH---HHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCcHH
Q 046631 560 KSGVINYAAN---VFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGC----GIEPD-AITFVAVLSACSYAGLVD 631 (813)
Q Consensus 560 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~ 631 (813)
..|++++|.+ ++..-......++..+...+...|++++|+..+++..+. +..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566777777 444432334567777777778888888888888776651 22222 235667777788888888
Q ss_pred HHHHHHHHHHHhcCCCC-C----hhHHHHHHHHHhccCCHHHHHHHHHHhC----cCCCh---HHHHHHHHHHHHHhCCH
Q 046631 632 EGLQIFDLMQQEYKIQP-S----TEHYCCVADMLGRVGKVVEAYEFVKELG----EEGNV---LEIWGSLLGSCRLHGHS 699 (813)
Q Consensus 632 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~ 699 (813)
+|...+++..+...-.+ + ...+..++.++...|++++|...+++.. ..++. ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887765422122 1 4567788888888888888888887752 22222 22467788888888999
Q ss_pred HHHHHHHHHHhcCC
Q 046631 700 ELAEVVAKKLLEMD 713 (813)
Q Consensus 700 ~~a~~~~~~~~~~~ 713 (813)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888877653
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=4.9e-06 Score=73.14 Aligned_cols=110 Identities=10% Similarity=0.008 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSL 689 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l 689 (813)
..+..+...+...|++++|...|++.. ...|+ ...+..++.+|...|++++|++.+++. ...|+...+|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 345555555556666666666666555 33454 455666666666777777777666654 3345445577777
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 690 LGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 690 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
..++...|++++|...++++++++|++ ...+..+..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKN--KVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHH
Confidence 777777888888888888888887776 55555555443
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.39 E-value=1.7e-06 Score=80.82 Aligned_cols=170 Identities=8% Similarity=-0.054 Sum_probs=101.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 046631 556 DMYSKSGVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDE 632 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~ 632 (813)
......|++++|.+.++.-.+ .....|..+...+...|++++|+..|++.++. .|+...+... ....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~ 81 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD 81 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH
Confidence 334445666666666653322 13445666667777777777777777777763 2322100000 0000
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 633 GLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 633 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
-. .. .....+..++.+|.+.|++++|+..+++. ...|+...+|..++.++...|++++|+..++++++
T Consensus 82 ~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 82 KK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 00 00 01356777888888888999888888876 44566666889999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHHHhcCCcHHHH-HHHHHHHHC
Q 046631 712 MDTRNSMPGYHVLLSNIYAEEGNWENVD-KVRKEMRER 748 (813)
Q Consensus 712 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 748 (813)
++|.+ +..+..++.++...|+.+++. ..+..|...
T Consensus 151 ~~p~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 151 LNPNN--LDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HSTTC--HHHHHHHHHHHHHHHHHHC------------
T ss_pred HCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99998 888889998888888777776 455555443
No 156
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.39 E-value=2.7e-06 Score=73.14 Aligned_cols=98 Identities=6% Similarity=-0.066 Sum_probs=89.6
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHH
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSN 727 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~ 727 (813)
+...+..++..+.+.|++++|++.+++. ...|....+|..+...+...|++++|...++++++..|.+ +..+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHHHH
Confidence 3788899999999999999999999986 4556666699999999999999999999999999999998 899999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHC
Q 046631 728 IYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 728 ~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+|...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998854
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.38 E-value=4.7e-06 Score=70.55 Aligned_cols=97 Identities=22% Similarity=0.264 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
...+..++..+.+.|++++|.++++++ ...|+...+|..+...+...|++++|...++++++..|.+ +..+..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHH
Confidence 677888999999999999999999987 3456556689999999999999999999999999999988 8889999999
Q ss_pred HHhcCCcHHHHHHHHHHHHC
Q 046631 729 YAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 729 ~~~~g~~~~A~~~~~~m~~~ 748 (813)
|...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999854
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.37 E-value=3.7e-06 Score=75.67 Aligned_cols=94 Identities=13% Similarity=0.055 Sum_probs=63.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 046631 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEP-DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCC 655 (813)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 655 (813)
+...|..+...+...|++++|+..|++.++. .| +...|..+..++...|++++|+..|++..+. .|+ ...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 4556666677777777777777777777763 33 4456666666777777777777777777644 454 666777
Q ss_pred HHHHHhccCCHHHHHHHHHHh
Q 046631 656 VADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~ 676 (813)
++.+|.+.|++++|++.+++.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777776665
No 159
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.33 E-value=3.2e-06 Score=86.31 Aligned_cols=141 Identities=9% Similarity=-0.066 Sum_probs=74.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIP--EKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSAC 624 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 624 (813)
+...+..+...|.+.|++++|...|++.. .|+... -..+.+.++- .+ ....|..+..++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-----------~~~~~~~~~~-~~-------~~~~~~nla~~~ 206 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-----------FSNEEAQKAQ-AL-------RLASHLNLAMCH 206 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-----------CCSHHHHHHH-HH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc-----------CChHHHHHHH-HH-------HHHHHHHHHHHH
Confidence 45678889999999999999999998776 222100 0001111000 00 012344444455
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHH
Q 046631 625 SYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELA 702 (813)
Q Consensus 625 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a 702 (813)
.+.|++++|+..++++.+. .|+ ...|..++.+|...|++++|+..|+++ ...|+...++..+..++...|+.+++
T Consensus 207 ~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555432 342 555555555555555555555555554 33444444555555555555555555
Q ss_pred -HHHHHHH
Q 046631 703 -EVVAKKL 709 (813)
Q Consensus 703 -~~~~~~~ 709 (813)
...++++
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 2344444
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.33 E-value=5.7e-06 Score=70.71 Aligned_cols=98 Identities=9% Similarity=-0.062 Sum_probs=88.9
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHH
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSN 727 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~ 727 (813)
+...+..++..+...|++++|.+.+++. ...|+...+|..++..+...|++++|...++++++..|.+ +..+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--SKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--HHHHHHHHH
Confidence 3677888999999999999999999986 4556666699999999999999999999999999999998 899999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHC
Q 046631 728 IYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 728 ~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+|...|++++|...+++..+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999998854
No 161
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.32 E-value=1.3e-05 Score=72.03 Aligned_cols=129 Identities=12% Similarity=-0.080 Sum_probs=94.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHH
Q 046631 579 SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVA 657 (813)
Q Consensus 579 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 657 (813)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+. .| +...+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 3456777777888888888888888887742 234567777777888888888888888888754 45 477788888
Q ss_pred HHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHH--HHHHhCCHHHHHHHHHHHhc
Q 046631 658 DMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLG--SCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~ 711 (813)
.++.+.|++++|.+.++++ ...|....++..+.. .+...|++++|...+++...
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888888876 344544445544333 36677888888888776543
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.29 E-value=5.3e-06 Score=71.87 Aligned_cols=101 Identities=10% Similarity=-0.043 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHH
Q 046631 612 PDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSL 689 (813)
Q Consensus 612 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l 689 (813)
.+...+..+...+...|++++|...|++..+. .|+ ...+..++.++...|++++|+..+++. ...|+.+.+|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34556777777777788888888888777754 453 677778888888888888888877775 4456666688888
Q ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 690 LGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 690 ~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
+.++...|++++|+..+++++++.|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888887776
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1.1e-05 Score=70.69 Aligned_cols=98 Identities=14% Similarity=0.000 Sum_probs=89.0
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCCh---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHH
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNV---LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVL 724 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~ 724 (813)
+...+..++..+.+.|++++|++.+++. ...|+. ..+|..+..++...|++++|+..++++++..|.+ +..+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC--HHHHHH
Confidence 4778889999999999999999999987 455664 5689999999999999999999999999999998 899999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 725 LSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 725 l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
++.+|...|++++|...+++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999854
No 164
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=4.8e-06 Score=70.23 Aligned_cols=97 Identities=11% Similarity=-0.019 Sum_probs=77.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHH
Q 046631 617 FVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCR 694 (813)
Q Consensus 617 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~ 694 (813)
+..+...+...|++++|...|++..+. .|+ ...+..++.++.+.|++++|+..+++. ...|+...+|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445566778889999999999888855 674 888888999999999999999988886 566777778999999999
Q ss_pred HhCCHHHHHHHHHHHhcCCCCC
Q 046631 695 LHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
..|++++|+..++++++.+|++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HcCCHHHHHHHHHHHHHhCcCC
Confidence 9999999999999999998875
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.25 E-value=2.9e-06 Score=79.18 Aligned_cols=162 Identities=10% Similarity=-0.035 Sum_probs=75.1
Q ss_pred HHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHhHHHHHHHHHHhcCCh
Q 046631 519 VLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPE--K-NSVTYTTMILGYGQHGMS 595 (813)
Q Consensus 519 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 595 (813)
........|.++.+...++...... ......+..+...+.+.|++++|...|++..+ | +.. |...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~---------- 77 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE-WDDQ---------- 77 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT-CCCH----------
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc-cchh----------
Confidence 3344455566666666655322211 11344577788889999999999999987652 1 220 0000
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHH
Q 046631 596 ERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVK 674 (813)
Q Consensus 596 ~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 674 (813)
........+ ....+..+..++...|++++|+..+++..+. .| +...+..++.+|...|++++|++.++
T Consensus 78 -~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 -ILLDKKKNI-------EISCNLNLATCYNKNKDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp -HHHHHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -hHHHHHHHH-------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000000000 0233444444555555555555555555533 33 25555555566666666666665555
Q ss_pred Hh-CcCCChHHHHHHHHHHHHHhCCHHHHH
Q 046631 675 EL-GEEGNVLEIWGSLLGSCRLHGHSELAE 703 (813)
Q Consensus 675 ~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 703 (813)
+. ...|+...++..+..++...++.+++.
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 54 333444445555555555544444443
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=7.3e-06 Score=87.42 Aligned_cols=167 Identities=5% Similarity=-0.063 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCCC-hh
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCG-IEPDAI----TFVAVLSACSYAGLVDEGLQIFDLMQQEY---KIQPS-TE 651 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~ 651 (813)
++..+...|...|++++|.+++.++...- ..++.. ..+.+-..+...|+.+++..++....... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 46778888888889988888888776521 111111 22233334456788999998888765431 22333 66
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhC-------cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC-----Cc
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKELG-------EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS-----MP 719 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-----~~ 719 (813)
++..++..|...|++++|..+++++. ..+....++..++..|...|++++|...+++++...+... ..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 78889999999999999999988751 2334455888999999999999999999998876532211 12
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 720 GYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 720 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
..+..++.++...|++++|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566778888899999999988877754
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.24 E-value=0.00015 Score=72.21 Aligned_cols=179 Identities=11% Similarity=-0.008 Sum_probs=123.4
Q ss_pred HHHHHHHHhhCC---CCCHhHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-HHHHHHHH
Q 046631 564 INYAANVFAKIP---EKNSVTYTTMILGYGQHG--MSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGL-VDEGLQIF 637 (813)
Q Consensus 564 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~-~~~a~~~~ 637 (813)
+++++.+++.+. .++..+|+.-...+...+ .+++++.+++++.+.. +-|...|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455666666554 346677777777777766 3788888888888743 3344566665555666676 58888888
Q ss_pred HHHHHhcCCCC-ChhHHHHHHHHHhcc--------------CCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh-----
Q 046631 638 DLMQQEYKIQP-STEHYCCVADMLGRV--------------GKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH----- 696 (813)
Q Consensus 638 ~~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~----- 696 (813)
+.+.+. .| |..+|+....++.+. +.++++++.+++. ...|+...+|+.+.+.+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 888865 45 466777666665544 4578888888775 56776666898877777665
Q ss_pred ------CCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH---HhcCCcHHHHHHHHHHHHC
Q 046631 697 ------GHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY---AEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 697 ------g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~ 748 (813)
+.++++++.++++++++|++ .-.+..++.+. ...|..+++...+.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 35788999999999999987 55544443322 2457778888888888853
No 168
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.23 E-value=1.2e-06 Score=73.48 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHHhCcC----CChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHH
Q 046631 663 VGKVVEAYEFVKELGEE----GNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENV 738 (813)
Q Consensus 663 ~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 738 (813)
.|++++|+..+++.... |+...+|..++.++...|++++|+..++++++.+|++ +..+..++.+|...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH--QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHcCCHHHH
Confidence 45666666666665332 4444566666777777777777777777777777766 66666777777777777777
Q ss_pred HHHHHHHHH
Q 046631 739 DKVRKEMRE 747 (813)
Q Consensus 739 ~~~~~~m~~ 747 (813)
...+++..+
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666664
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.23 E-value=7.8e-06 Score=87.71 Aligned_cols=114 Identities=13% Similarity=-0.030 Sum_probs=57.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCH
Q 046631 589 YGQHGMSERALSLFRSMKGCGIEPD-AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKV 666 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 666 (813)
+.+.|++++|++.|++.++. .|+ ...+..+..++.+.|++++|+..+++..+ +.|+ ...+..++.+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCH
Confidence 34455555555555555552 332 34555555555556666666665555553 2443 55555556666666666
Q ss_pred HHHHHHHHHh-CcCCChHHHHHHHHHH--HHHhCCHHHHHHHHH
Q 046631 667 VEAYEFVKEL-GEEGNVLEIWGSLLGS--CRLHGHSELAEVVAK 707 (813)
Q Consensus 667 ~~A~~~~~~~-~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 707 (813)
++|++.+++. ...|+...++..+..+ +...|++++|+..++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666555554 2333333344444444 555556666666655
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.21 E-value=3.3e-06 Score=90.66 Aligned_cols=119 Identities=8% Similarity=-0.038 Sum_probs=101.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC
Q 046631 620 VLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG 697 (813)
Q Consensus 620 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 697 (813)
+...+...|++++|.+.+++..+. .|+ ...|..++.+|.+.|++++|++.+++. ...|+...+|..++.++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334567889999999999999865 675 889999999999999999999999887 556777779999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCchhHHHHHHH--HHhcCCcHHHHHHHH
Q 046631 698 HSELAEVVAKKLLEMDTRNSMPGYHVLLSNI--YAEEGNWENVDKVRK 743 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 743 (813)
++++|+..++++++++|++ +..+..++.+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHD--KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTC--TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999998 8888888888 888999999999987
No 171
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.19 E-value=0.00031 Score=70.23 Aligned_cols=229 Identities=13% Similarity=0.009 Sum_probs=139.1
Q ss_pred hcCCHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHH
Q 046631 457 KSGLIKTARQIFEKNDSGDR-DQATWNAMIAGYTQNG-LLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQ 534 (813)
Q Consensus 457 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 534 (813)
+.+..++|.++++.+....| +..+|+.--..+...| .+++++..++.+... .|...+
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~------------------- 124 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQ------------------- 124 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHH-------------------
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHH-------------------
Confidence 33444567777776655456 5566777777777777 488888888888764 343322
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhc-C-CHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChH--------HHHHH
Q 046631 535 LHGFSIRYLLDQNVFVGTSLIDMYSKS-G-VINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSE--------RALSL 601 (813)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~ 601 (813)
+|+.-...+.+. + ++++++++++++.+ +|..+|+--...+.+.|.++ ++++.
T Consensus 125 ---------------aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 125 ---------------VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp ---------------HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 233222233332 3 55666666666663 35556665555555555555 78888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCc-------HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCH-------
Q 046631 602 FRSMKGCGIEPDAITFVAVLSACSYAGL-------VDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKV------- 666 (813)
Q Consensus 602 ~~~m~~~g~~p~~~~~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~------- 666 (813)
++++++.. .-|...|+.....+.+.+. +++++++++++... .| |...|+.+-.++.+.|+-
T Consensus 190 ~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~ 265 (349)
T 3q7a_A 190 CNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPA 265 (349)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCccccccc
Confidence 88888753 3345566666666666654 67888888777744 56 477777766667666543
Q ss_pred -------------HHHHHHHHHhCcC-------CChHHHHHHHHHHHHHhCCHHHHHHHHHHHh-cCCCCCCCchhHHHH
Q 046631 667 -------------VEAYEFVKELGEE-------GNVLEIWGSLLGSCRLHGHSELAEVVAKKLL-EMDTRNSMPGYHVLL 725 (813)
Q Consensus 667 -------------~~A~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~~~l 725 (813)
.+..++..++... ...+.++..|+..|...|+.++|.++++.+. +.+|.. ..++...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir--~~yw~~~ 343 (349)
T 3q7a_A 266 ILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR--AGYWEFR 343 (349)
T ss_dssp HGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG--HHHHHHH
T ss_pred ccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH--HHHHHHH
Confidence 3444444444322 2344478888888888888889999988886 667765 5555544
Q ss_pred HH
Q 046631 726 SN 727 (813)
Q Consensus 726 ~~ 727 (813)
+.
T Consensus 344 ~~ 345 (349)
T 3q7a_A 344 RR 345 (349)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.19 E-value=1.6e-05 Score=84.90 Aligned_cols=162 Identities=12% Similarity=0.016 Sum_probs=110.3
Q ss_pred CCHHHHHHHHhhCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046631 562 GVINYAANVFAKIPE---KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFD 638 (813)
Q Consensus 562 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 638 (813)
+++++|.+.|+...+ .....|..+...|.+.|++++|+..|++.++. .|+...+ . -+...
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~---- 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK---- 310 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----
Confidence 344445444443331 13556777777788888888888888877762 2221100 0 00100
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC
Q 046631 639 LMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS 717 (813)
Q Consensus 639 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 717 (813)
+... -....|..++.+|.+.|++++|+..++++ ...|+...+|..+..++...|++++|+..++++++++|++
T Consensus 311 ~~~~-----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~- 384 (457)
T 1kt0_A 311 ASES-----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN- 384 (457)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHH-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Confidence 0100 01467888899999999999999998886 5566666799999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCcHHHHH-HHHHHHH
Q 046631 718 MPGYHVLLSNIYAEEGNWENVDK-VRKEMRE 747 (813)
Q Consensus 718 ~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 747 (813)
...+..++.++.+.|++++|.+ .+++|..
T Consensus 385 -~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 385 -KAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999988775 5555543
No 173
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=7e-06 Score=71.16 Aligned_cols=62 Identities=13% Similarity=-0.085 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcC-------CCCCCCchhH----HHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEM-------DTRNSMPGYH----VLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.|..+..++...|++++|+..+++++++ +|++ +..| ...+.++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~--~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE--GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch--HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7888888888888888888888888888 9988 8888 88999999999999999999998864
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.18 E-value=2.6e-05 Score=66.52 Aligned_cols=101 Identities=13% Similarity=-0.013 Sum_probs=72.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-h---hHHHHHHHHHhccCCHHHHHHHHHHh-CcCCCh---HHHHHHHH
Q 046631 619 AVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-T---EHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNV---LEIWGSLL 690 (813)
Q Consensus 619 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~---~~~~~~l~ 690 (813)
.+...+...|++++|...|+.+.+. .|+ . ..+..++.++.+.|++++|+..++++ ...|+. +.++..++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3445666778888888888777754 343 2 46777788888888888888887775 333443 55788888
Q ss_pred HHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHH
Q 046631 691 GSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVL 724 (813)
Q Consensus 691 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~ 724 (813)
.++...|++++|...++++++..|++ +.....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~a 115 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGS--DAARVA 115 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTS--HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCC--hHHHHH
Confidence 88888888888888888888888876 444333
No 175
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.16 E-value=1.4e-05 Score=67.98 Aligned_cols=97 Identities=13% Similarity=0.022 Sum_probs=58.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhC----cCCC----hHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELG----EEGN----VLEIW 686 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~ 686 (813)
.+..+...+.+.|++++|+..|++.++. .|+ ...|..++.+|.+.|++++|++.+++.. ..+. ...+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3444555555566666666666655532 453 5555666666666666666666655541 1111 12256
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 687 GSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 687 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
..++.++...|++++|+..+++++...|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 67777777788888888888888777665
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.16 E-value=2.3e-06 Score=71.84 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=68.3
Q ss_pred cCcHHHHHHHHHHHHHhcCC-CCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHH
Q 046631 627 AGLVDEGLQIFDLMQQEYKI-QPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAE 703 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 703 (813)
.|++++|+..|++..+. +. .|+ ...+..++.+|.+.|++++|++.+++. ...|+.+.++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 56777788888777732 10 243 677788888888888888888888876 455666668888888888899999999
Q ss_pred HHHHHHhcCCCCCCCchhH
Q 046631 704 VVAKKLLEMDTRNSMPGYH 722 (813)
Q Consensus 704 ~~~~~~~~~~p~~~~~~~~ 722 (813)
..++++++..|++ +...
T Consensus 82 ~~~~~al~~~p~~--~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDD--ETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCC--HHHH
T ss_pred HHHHHHHHhCCCc--HHHH
Confidence 9999998888887 5543
No 177
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.15 E-value=3.5e-06 Score=86.02 Aligned_cols=150 Identities=11% Similarity=-0.028 Sum_probs=88.7
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 046631 578 NSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVA 657 (813)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 657 (813)
....|..+...+.+.|++++|+..|++.+. ..|+... +...|+.+++...+. ...|..++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHH
Confidence 355677788888889999999999999887 4555442 234455555443221 23688899
Q ss_pred HHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH-HhcCCc
Q 046631 658 DMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY-AEEGNW 735 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~-~~~g~~ 735 (813)
.+|.+.|++++|+..+++. ...|+...+|..+..++...|++++|+..++++++++|++ +..+..++.+. ...+..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~--~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD--KAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886 5567666699999999999999999999999999999998 88888887773 445677
Q ss_pred HHHHHHHHHHHHCC
Q 046631 736 ENVDKVRKEMRERG 749 (813)
Q Consensus 736 ~~A~~~~~~m~~~~ 749 (813)
+++..++++|.+..
T Consensus 316 ~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 316 QKQKEMYKGIFKGK 329 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHhhCCC
Confidence 78888888887543
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.13 E-value=9.1e-06 Score=83.85 Aligned_cols=138 Identities=11% Similarity=-0.051 Sum_probs=105.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHH
Q 046631 579 SVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVA 657 (813)
Q Consensus 579 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 657 (813)
...|..+...+.+.|++++|+..|++.++. .+... .... .+... ...| +...|..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHH
Confidence 456777788888888888888888887762 11100 0001 11111 1234 367888999
Q ss_pred HHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcH
Q 046631 658 DMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWE 736 (813)
Q Consensus 658 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~ 736 (813)
.+|.+.|++++|++.++++ ...|+...+|..+..++...|++++|+..++++++++|++ ...+..++.++...++.+
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~--~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED--KAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887 5567777799999999999999999999999999999998 888889999988888777
Q ss_pred HHHH
Q 046631 737 NVDK 740 (813)
Q Consensus 737 ~A~~ 740 (813)
++.+
T Consensus 359 ~a~k 362 (370)
T 1ihg_A 359 DKEK 362 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.13 E-value=1e-05 Score=72.26 Aligned_cols=131 Identities=16% Similarity=0.032 Sum_probs=72.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHhC----cCCC---hHHH
Q 046631 617 FVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TEHYCCVADMLGRVGKVVEAYEFVKELG----EEGN---VLEI 685 (813)
Q Consensus 617 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~---~~~~ 685 (813)
+..+...+...|++++|...+++..+...-.++ ...+..++..+...|++++|.+.+++.. ..++ ...+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 333444444444555554444444322100011 2345556666666666666666655531 1111 1225
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC----CCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRN----SMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
+..+...+...|++++|...++++++..+.. .....+..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666777777777777777777776542211 0134566778888888888888888887764
No 180
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.12 E-value=1.8e-05 Score=78.42 Aligned_cols=101 Identities=9% Similarity=-0.062 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHH
Q 046631 613 DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLL 690 (813)
Q Consensus 613 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~ 690 (813)
+...+..+...+...|++++|...|++..+. .| +...|..++.+|.+.|++++|+..+++. ...|+...+|..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4567778888899999999999999999865 67 5888999999999999999999999886 55677677899999
Q ss_pred HHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 691 GSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 691 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
.++...|++++|+..++++++++|++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999998876
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.11 E-value=1.8e-05 Score=65.38 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=73.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCC--hHHHHHHHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGN--VLEIWGSLLG 691 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~~~~l~~ 691 (813)
.+..+...+...|++++|...+++..+. .| +...+..++.++...|++++|++.+++. ...|. ...+|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4555666677777888888877777754 34 3667777888888888888888887776 33455 5558888888
Q ss_pred HHHHh-CCHHHHHHHHHHHhcCCCCC
Q 046631 692 SCRLH-GHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 692 ~~~~~-g~~~~a~~~~~~~~~~~p~~ 716 (813)
++... |++++|...++++++..|.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 88888 88888888888888888875
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=2.6e-05 Score=66.55 Aligned_cols=96 Identities=17% Similarity=0.008 Sum_probs=81.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhC-cCCChH---HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC-chhHHHHHH
Q 046631 653 YCCVADMLGRVGKVVEAYEFVKELG-EEGNVL---EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM-PGYHVLLSN 727 (813)
Q Consensus 653 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~~~l~~ 727 (813)
+..++..+.+.|++++|.+.++++. ..|+.. .+|..++.++...|++++|...++++++..|++.. +..+..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 4557788899999999999999873 244433 68899999999999999999999999999998621 244788999
Q ss_pred HHHhcCCcHHHHHHHHHHHHC
Q 046631 728 IYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 728 ~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+|...|++++|...++++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999854
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.10 E-value=6.7e-06 Score=73.72 Aligned_cols=77 Identities=16% Similarity=-0.006 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCc-hhHHHHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMP-GYHVLLSN 727 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~~~l~~ 727 (813)
...|..++.+|.+.|++++|+..+++. ...|+.+.+|..++.++...|++++|...++++++++|++ + .....+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~~l~~ 140 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA--ASVVAREMKI 140 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC--HHHHHHHHHH
Confidence 567888999999999999999988876 5567777799999999999999999999999999999987 5 44444443
Q ss_pred H
Q 046631 728 I 728 (813)
Q Consensus 728 ~ 728 (813)
+
T Consensus 141 ~ 141 (162)
T 3rkv_A 141 V 141 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.09 E-value=9.1e-06 Score=70.47 Aligned_cols=70 Identities=19% Similarity=0.076 Sum_probs=58.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh-Cc-------CCChHHHH----HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCc
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKEL-GE-------EGNVLEIW----GSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMP 719 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 719 (813)
.|..++.++.+.|++++|+..+++. .. +|+....| ...+.++...|++++|+..|+++++++|.+ .
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d--~ 136 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER--K 136 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc--H
Confidence 6777778888888888888777765 34 78888799 999999999999999999999999999998 5
Q ss_pred hhHH
Q 046631 720 GYHV 723 (813)
Q Consensus 720 ~~~~ 723 (813)
..+-
T Consensus 137 ~~~~ 140 (159)
T 2hr2_A 137 GETP 140 (159)
T ss_dssp SCCT
T ss_pred HHHH
Confidence 5443
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.07 E-value=2.5e-05 Score=80.61 Aligned_cols=113 Identities=7% Similarity=-0.075 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHH
Q 046631 615 ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCR 694 (813)
Q Consensus 615 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 694 (813)
..+..+...+.+.|++++|+..|++..+. .|+.. .....+++ ....|....+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~------~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADG------AKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHH------GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHH------HHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666532 01000 00011111 1133445558999999999
Q ss_pred HhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 695 LHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
+.|++++|+..++++++++|++ +..+..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSN--TKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999998 999999999999999999999999999854
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.07 E-value=2.5e-05 Score=69.58 Aligned_cols=134 Identities=13% Similarity=0.029 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC----hh
Q 046631 581 TYTTMILGYGQHGMSERALSLFRSMKGCGIE-PDA----ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS----TE 651 (813)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 651 (813)
++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|..++++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666666677766666665542110 111 25666667777788888888887776543211122 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhC----cCC---ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKELG----EEG---NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 714 (813)
.+..++.++...|++++|.+.+++.. ..+ ....++..+...+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 67778888888888888888877652 122 2233677888888889999999999988876543
No 187
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.06 E-value=3.1e-05 Score=66.02 Aligned_cols=99 Identities=8% Similarity=0.007 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC-----chhHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM-----PGYHV 723 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~~ 723 (813)
...+..++..+...|++++|...+++. ...|....+|..++..+...|++++|...++++++..|.+.. +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455677788888888888888888776 344555558888888888899999999999998888765311 34677
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 724 LLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 724 ~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.++.+|...|++++|.+.++++.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8899999999999999999998853
No 188
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.06 E-value=2.1e-05 Score=67.05 Aligned_cols=108 Identities=12% Similarity=-0.011 Sum_probs=67.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhCc-CCCh-------HHHH
Q 046631 616 TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKELGE-EGNV-------LEIW 686 (813)
Q Consensus 616 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-------~~~~ 686 (813)
.+..+...+...|++++|..++++..+. .| +...+..++.+|...|++++|...++++.. .|.. ..+|
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3445555566666666666666666543 23 355666666666666666666666665411 1111 3467
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 687 GSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 687 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
..++..+...|++++|...++++++..|+ +.....++.++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT---PDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC---HHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC---HHHHHHHHHHH
Confidence 77788888888888888888888887773 45555554443
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.04 E-value=3.6e-05 Score=81.81 Aligned_cols=125 Identities=12% Similarity=0.064 Sum_probs=95.1
Q ss_pred HHhccCcHHHHHHHHHHHHHhc--CCCC---C-hhHHHHHHHHHhccCCHHHHHHHHHHh---------CcCCChHHHHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEY--KIQP---S-TEHYCCVADMLGRVGKVVEAYEFVKEL---------GEEGNVLEIWG 687 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~--~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~~ 687 (813)
.+...|++++|..++++..+.. -+.| + ..+++.|+.+|...|++++|+.++++. +.+|+...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456777888877777665442 1122 2 667888888888888888888887774 45566666889
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhc-----CCCCCCCchh---HHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLE-----MDTRNSMPGY---HVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
.|+..|..+|++++|+.+++++++ ++|+. |.+ ...+..++.+.|++++|+.++.+++++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H--p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH--PITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998875 46665 544 4467788889999999999999998754
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.03 E-value=1.4e-05 Score=81.64 Aligned_cols=149 Identities=7% Similarity=-0.010 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 046631 548 VFVGTSLIDMYSKSGVINYAANVFAKIPE--KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACS 625 (813)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~ 625 (813)
...+..+...|.+.|++++|...|++... |+... +...++..++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 44577888889999999999999998663 32221 222333444433221 136788888999
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHH-HhCCHHHH
Q 046631 626 YAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCR-LHGHSELA 702 (813)
Q Consensus 626 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~-~~g~~~~a 702 (813)
+.|++++|+..+++..+. .| +...|..++.+|...|++++|+..++++ ...|+...++..|..... ..+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999855 57 4889999999999999999999999987 456666667777776633 44677888
Q ss_pred HHHHHHHhcCCCCC
Q 046631 703 EVVAKKLLEMDTRN 716 (813)
Q Consensus 703 ~~~~~~~~~~~p~~ 716 (813)
...++++++..|.+
T Consensus 319 ~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 319 KEMYKGIFKGKDEG 332 (338)
T ss_dssp --------------
T ss_pred HHHHHHhhCCCCCC
Confidence 89999999998876
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.00 E-value=0.00021 Score=78.05 Aligned_cols=171 Identities=6% Similarity=-0.065 Sum_probs=140.1
Q ss_pred cCCHHHHHHHHhhCC--C-CCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 046631 561 SGVINYAANVFAKIP--E-KNSVTYTTMILGYGQHGM----------SERALSLFRSMKGCGIEPDAITFVAVLSACSYA 627 (813)
Q Consensus 561 ~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 627 (813)
...-++|.+.++.+. . .+..+|+.--..+...|+ ++++++.++++.+.. +-+...|..-...+.+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344567788888776 2 356788877777777777 899999999999853 33455788777788888
Q ss_pred C--cHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccC-CHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHh------
Q 046631 628 G--LVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVG-KVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLH------ 696 (813)
Q Consensus 628 g--~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~------ 696 (813)
| +++++++.++++.+. .| +..+|+.-..++.+.| .++++++.++++ ..+|....+|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8 779999999999965 66 5888988888999999 899999998887 56676666999988888774
Q ss_pred --------CCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHH
Q 046631 697 --------GHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWEN 737 (813)
Q Consensus 697 --------g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 737 (813)
+.++++.+.+++++..+|++ ...+..+.+++.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~--~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPND--QSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSC--SHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCC--ccHHHHHHHHHhcCCCccc
Confidence 45789999999999999999 9999999999999988665
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00012 Score=77.80 Aligned_cols=161 Identities=9% Similarity=-0.027 Sum_probs=120.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-
Q 046631 587 LGYGQHGMSERALSLFRSMKGCGIEPD----------------AITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS- 649 (813)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 649 (813)
..+...|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+.+..+-.++
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445677888888888888887432211 124778889999999999999999988765433333
Q ss_pred ---hhHHHHHHHHHhccCCHHHHHHHHHHh-------CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC----CCC
Q 046631 650 ---TEHYCCVADMLGRVGKVVEAYEFVKEL-------GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM----DTR 715 (813)
Q Consensus 650 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~ 715 (813)
..+.+.+...+...|++++|.++++.. ........++..|+..+...|++++|...+++++.. +..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 234556667777889999999988775 233344558899999999999999999999988653 222
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 716 NSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 716 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
......+..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 21245788899999999999999999998875
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.95 E-value=5e-05 Score=81.06 Aligned_cols=65 Identities=14% Similarity=-0.025 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 683 LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
..+|..+..++.+.|++++|+..++++++++|++ +..+..++.+|...|++++|...++++.+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN--EKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3489999999999999999999999999999999 9999999999999999999999999998653
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.91 E-value=3.5e-05 Score=62.23 Aligned_cols=68 Identities=15% Similarity=0.047 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 679 EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 679 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.|+.+.+|..++..+...|++++|+..++++++++|++ +..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY--VGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46666689999999999999999999999999999998 899999999999999999999999998854
No 195
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.89 E-value=0.0029 Score=62.94 Aligned_cols=175 Identities=13% Similarity=-0.002 Sum_probs=116.6
Q ss_pred chhHHHHHHHHHHhcC--CHHHHHHHHhhCC---CCCHhHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHH
Q 046631 547 NVFVGTSLIDMYSKSG--VINYAANVFAKIP---EKNSVTYTTMILGYGQHGM-SERALSLFRSMKGCGIEPDAITFVAV 620 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 620 (813)
+..+|+.-.-++.+.| .+++++.+++++. ..|..+|+--...+...|. ++++++.++++++.. .-|...|+..
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R 185 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYR 185 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 3444555555555555 3677777777776 3467777777777777777 588888888888853 3344455555
Q ss_pred HHHHhcc--------------CcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhcc-----------CCHHHHHHHHH
Q 046631 621 LSACSYA--------------GLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRV-----------GKVVEAYEFVK 674 (813)
Q Consensus 621 l~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~ 674 (813)
...+... +.++++++++...... .| |...|+-+-..+.+. +.++++++.++
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 4444333 4578888888888854 67 477777666666555 46788888888
Q ss_pred Hh-CcCCChHHHHHHHHHHH-----HHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 046631 675 EL-GEEGNVLEIWGSLLGSC-----RLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIY 729 (813)
Q Consensus 675 ~~-~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~ 729 (813)
++ ...|+. .|..+..++ ...|..++....+.++.+++|.. ...|.-+..-+
T Consensus 263 elle~~pd~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r--~~~y~d~~~~~ 319 (331)
T 3dss_A 263 ELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR--AAYLDDLRSKF 319 (331)
T ss_dssp HHHHHCTTC--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG--HHHHHHHHHHH
T ss_pred HHHhhCccc--chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch--hhHHHHHHHHH
Confidence 87 455655 454433322 23567788999999999999998 77777665443
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.85 E-value=7.2e-05 Score=58.89 Aligned_cols=82 Identities=23% Similarity=0.261 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNI 728 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~ 728 (813)
...+..++..+.+.|++++|+..+++. ...|+...+|..+..++...|++++|...++++++++|.+ +..+..++.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--HHHHHHHHHH
Confidence 566777888888888888888888876 4456556688889999999999999999999999999988 8888888888
Q ss_pred HHhcC
Q 046631 729 YAEEG 733 (813)
Q Consensus 729 ~~~~g 733 (813)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 76554
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.83 E-value=0.00033 Score=60.33 Aligned_cols=112 Identities=8% Similarity=-0.085 Sum_probs=74.5
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHH----hCCHHHHH
Q 046631 628 GLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRL----HGHSELAE 703 (813)
Q Consensus 628 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 703 (813)
+++++|..+|++..+. | .|+. . |..+|...+.+++|++++++....++.. .+..|...|.. .+|.++|.
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~-a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGN-GCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHH-HHHHHHHHHHcCCCCCccHHHHH
Confidence 3566677777666654 3 2222 2 6666666667777777777766555554 66777777766 66777777
Q ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHh----cCCcHHHHHHHHHHHHCCC
Q 046631 704 VVAKKLLEMDTRNSMPGYHVLLSNIYAE----EGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 704 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 750 (813)
..++++.+. .+ +..+..|+.+|.. .++.++|.+++++..+.|.
T Consensus 82 ~~~~~Aa~~--g~--~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--ND--QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CC--HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 777777765 23 5666777777777 6777777777777776653
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.82 E-value=4.7e-05 Score=63.36 Aligned_cols=79 Identities=10% Similarity=0.041 Sum_probs=62.2
Q ss_pred HHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 668 EAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 668 ~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
+|++.+++. ...|+.+.+|..++..+...|++++|+..++++++.+|.+ +..+..++.+|...|++++|...+++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY--SVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355555554 4556666688888888888888888888888888888887 7888888888888888888888888877
Q ss_pred HC
Q 046631 747 ER 748 (813)
Q Consensus 747 ~~ 748 (813)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.76 E-value=1.7e-05 Score=68.60 Aligned_cols=85 Identities=8% Similarity=-0.034 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCC----------HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh
Q 046631 663 VGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGH----------SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAE 731 (813)
Q Consensus 663 ~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 731 (813)
.+.+++|++.+++. ..+|+.++.|..++.++...++ +++|+..++++++++|+. ...|..++++|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~--~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK--DEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHH
Confidence 34455555555543 3455555555555555555544 468999999999999998 8889999999988
Q ss_pred cC-----------CcHHHHHHHHHHHHCC
Q 046631 732 EG-----------NWENVDKVRKEMRERG 749 (813)
Q Consensus 732 ~g-----------~~~~A~~~~~~m~~~~ 749 (813)
.| ++++|.+.|++..+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999988653
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.75 E-value=4.7e-05 Score=65.86 Aligned_cols=110 Identities=13% Similarity=0.017 Sum_probs=73.7
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCH----------HHHHHHHHHh-CcCCChHHHHHHHHHHH
Q 046631 626 YAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKV----------VEAYEFVKEL-GEEGNVLEIWGSLLGSC 693 (813)
Q Consensus 626 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~----------~~A~~~~~~~-~~~~~~~~~~~~l~~~~ 693 (813)
+.+.+++|.+.++...+. .|+ ...|..++.++...|++ ++|+..|++. ..+|+..++|..++.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 344566677777666643 563 66777677777666553 4777777765 56677777788888888
Q ss_pred HHh-----------CCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 046631 694 RLH-----------GHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 694 ~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 747 (813)
... |++++|+..|+++++++|++ ..+...+. -.++|.++.-.+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~--~~y~~al~-------~~~ka~el~~~~~~ 146 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN--THYLKSLE-------MTAKAPQLHAEAYK 146 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHH-------HHHTHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC--HHHHHHHH-------HHHhCHhccCcccc
Confidence 776 48999999999999999997 54433331 12455555555443
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.74 E-value=0.00019 Score=76.28 Aligned_cols=123 Identities=10% Similarity=-0.019 Sum_probs=76.6
Q ss_pred HHhcCChHHHHHHHHHHHhC---CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHh----cCC-CCC-hhHHHH
Q 046631 589 YGQHGMSERALSLFRSMKGC---GIEPDA----ITFVAVLSACSYAGLVDEGLQIFDLMQQE----YKI-QPS-TEHYCC 655 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~---g~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~-~p~-~~~~~~ 655 (813)
+..+|++++|+.++++.++. -+.|+. .+++.|..+|...|++++|..++++..+. +|- .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34455555555555554431 122221 25666666777777777777666665432 121 122 566778
Q ss_pred HHHHHhccCCHHHHHHHHHHh---------CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 656 VADMLGRVGKVVEAYEFVKEL---------GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
|+.+|...|++++|+.++++. +.+|...++.+.|..++...+.+++|+..+.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877764 34455555666777777777888888888877654
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=8.4e-05 Score=61.18 Aligned_cols=95 Identities=12% Similarity=-0.064 Sum_probs=72.4
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC----chhHH
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSM----PGYHV 723 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~~ 723 (813)
+...+..++..+.+.|++++|++.+++. ...|+.+.+|..++.++...|++++|+..++++++++|++.. ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4567788888999999999999998886 456666668999999999999999999999999999988511 22345
Q ss_pred HHHHHHHhcCCcHHHHHHHH
Q 046631 724 LLSNIYAEEGNWENVDKVRK 743 (813)
Q Consensus 724 ~l~~~~~~~g~~~~A~~~~~ 743 (813)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 56666666666665554443
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.66 E-value=0.00017 Score=56.70 Aligned_cols=69 Identities=6% Similarity=-0.006 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHHHhCC---HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 679 EGNVLEIWGSLLGSCRLHGH---SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 679 ~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
.|+.+++|..+..++...++ .++|...++++++++|++ +....+++..+.+.|++++|...|+++.+..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~--~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN--EAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45666688888888876655 699999999999999999 9999999999999999999999999999654
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.64 E-value=0.001 Score=72.60 Aligned_cols=153 Identities=12% Similarity=0.074 Sum_probs=125.6
Q ss_pred hcC-ChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCc----------HHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 046631 591 QHG-MSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGL----------VDEGLQIFDLMQQEYKIQPS-TEHYCCVA 657 (813)
Q Consensus 591 ~~g-~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 657 (813)
+.| ..++|++.+++++. +.|+.. .|+.--.++...|+ +++++..++.+.+. .|. ..+|..-.
T Consensus 40 ~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~ 114 (567)
T 1dce_A 40 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRC 114 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 344 45788999999999 567655 45555555555666 89999999999965 674 88898888
Q ss_pred HHHhccC--CHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhC-CHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhc-
Q 046631 658 DMLGRVG--KVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHG-HSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEE- 732 (813)
Q Consensus 658 ~~~~~~g--~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~- 732 (813)
.++.+.| ++++++++++++ ..+|....+|+.-.+.+...| .++++.+.++++++.+|.+ ..++...+.++.+.
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n--~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLPQLH 192 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC--HHHHHHHHHHHHHHS
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC--ccHHHHHHHHHHhhc
Confidence 9999999 779999999998 566666669999999999999 8999999999999999999 89999998888874
Q ss_pred -------------CCcHHHHHHHHHHHHCCC
Q 046631 733 -------------GNWENVDKVRKEMRERGL 750 (813)
Q Consensus 733 -------------g~~~~A~~~~~~m~~~~~ 750 (813)
++++++.+.++++....+
T Consensus 193 ~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 193 PQPDSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp CCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccccccccHHHHHHHHHHHHHHHhhCC
Confidence 567889998888876543
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.62 E-value=0.00013 Score=60.51 Aligned_cols=82 Identities=9% Similarity=-0.032 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 046631 632 EGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKL 709 (813)
Q Consensus 632 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 709 (813)
+|+..|++.. ...|+ ...+..++.+|.+.|++++|+..+++. ...|+...+|..++.++...|++++|...++++
T Consensus 3 ~a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556666665 44564 777778888888888888888888775 445665668888888888888888888888888
Q ss_pred hcCCCCC
Q 046631 710 LEMDTRN 716 (813)
Q Consensus 710 ~~~~p~~ 716 (813)
+++.|..
T Consensus 80 l~~~~~~ 86 (115)
T 2kat_A 80 LAAAQSR 86 (115)
T ss_dssp HHHHHHH
T ss_pred HHhcccc
Confidence 8877654
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.59 E-value=0.00045 Score=59.48 Aligned_cols=113 Identities=8% Similarity=-0.107 Sum_probs=94.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCCHH
Q 046631 592 HGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGR----VGKVV 667 (813)
Q Consensus 592 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 667 (813)
.+++++|++.|++..+.| .|+.. |...|...+.+++|.++|++..+. -+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356789999999999987 44443 666677778889999999998865 367888889999988 88999
Q ss_pred HHHHHHHHhCcCCChHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcCCC
Q 046631 668 EAYEFVKELGEEGNVLEIWGSLLGSCRL----HGHSELAEVVAKKLLEMDT 714 (813)
Q Consensus 668 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 714 (813)
+|++++++....++.. .+..|...|.. .+|.++|...++++.+.+.
T Consensus 79 ~A~~~~~~Aa~~g~~~-a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQD-GCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHH-HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999997777766 88899999988 7899999999999998754
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.52 E-value=0.0002 Score=75.00 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=84.0
Q ss_pred HHHHhccCCHHHHHHHHHHh---------CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC-----CCCC-CCchh
Q 046631 657 ADMLGRVGKVVEAYEFVKEL---------GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM-----DTRN-SMPGY 721 (813)
Q Consensus 657 ~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~-~~~~~ 721 (813)
+.-+.+.|++++|+.++++. +.+|....+++.|+.+|...|++++|+.++++++++ +|++ +....
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677778887777765 223344557888888888888998888888887753 3433 11445
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 046631 722 HVLLSNIYAEEGNWENVDKVRKEMRERGLRKEVGCSWIDVGGYVNRFASKDQEHPQSHKIYEMLERLAMEMR 793 (813)
Q Consensus 722 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 793 (813)
+..|+.+|..+|++++|..++++..+--.. .-...||...+++..|.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 677899999999999999999998742110 111469999888888888777664
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.45 E-value=0.00017 Score=58.14 Aligned_cols=68 Identities=10% Similarity=0.005 Sum_probs=51.8
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
+...+..++.+|.+.|++++|++.++++ ...|+.+.+|..++.++...|++++|+..+++++++.|..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 3677777888888888888888888775 4556656678888888888888888888888887766543
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.40 E-value=0.0009 Score=52.34 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 682 VLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
....|..+...+...|++++|+..++++++..|.+ +..+..++.+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44588899999999999999999999999999998 899999999999999999999999998854
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.39 E-value=0.00016 Score=75.47 Aligned_cols=85 Identities=15% Similarity=0.111 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHHh---------CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC-----CCCC-CCchhHHHHHH
Q 046631 663 VGKVVEAYEFVKEL---------GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEM-----DTRN-SMPGYHVLLSN 727 (813)
Q Consensus 663 ~g~~~~A~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~-~~~~~~~~l~~ 727 (813)
.|++++|+.++++. +.+|+...+++.|+.+|...|++++|+.++++++++ +|++ +....+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34555555555543 233344456677777777777777777777766642 3333 11445667888
Q ss_pred HHHhcCCcHHHHHHHHHHHH
Q 046631 728 IYAEEGNWENVDKVRKEMRE 747 (813)
Q Consensus 728 ~~~~~g~~~~A~~~~~~m~~ 747 (813)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888888764
No 211
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00016 Score=59.48 Aligned_cols=61 Identities=8% Similarity=0.036 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046631 580 VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQ 641 (813)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 641 (813)
..|..+...+...|++++|++.|++.++.. +.+...+..+..++...|++++|+..+++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345555555555566666666666555531 1233445555555555666666666655555
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.31 E-value=0.0017 Score=64.73 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=53.7
Q ss_pred HhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 675 ELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 675 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
.+...|..+.+|..+...+...|++++|...+++++.++|. ...|..++.++.-.|++++|.+.+++.....
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS---WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 33445656657777776676778888888888888888764 5667788888888888888888888777654
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.25 E-value=0.0017 Score=67.69 Aligned_cols=95 Identities=16% Similarity=0.054 Sum_probs=65.9
Q ss_pred ccCcHHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHh---------CcCCChHHHHHHHH
Q 046631 626 YAGLVDEGLQIFDLMQQEY--KIQPS----TEHYCCVADMLGRVGKVVEAYEFVKEL---------GEEGNVLEIWGSLL 690 (813)
Q Consensus 626 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~~~l~ 690 (813)
..|++++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.++++. +.+|+....++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3456677777766655431 12232 566777888888888888888777764 45566666888888
Q ss_pred HHHHHhCCHHHHHHHHHHHhc-----CCCCCCCchhH
Q 046631 691 GSCRLHGHSELAEVVAKKLLE-----MDTRNSMPGYH 722 (813)
Q Consensus 691 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~ 722 (813)
..|..+|++++|+.+++++++ .+|++ |.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H--p~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDH--PYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC--HHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCC--hHHH
Confidence 999999999999888888875 35665 5443
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.08 E-value=0.0041 Score=64.96 Aligned_cols=100 Identities=10% Similarity=-0.058 Sum_probs=66.2
Q ss_pred HHhccCcHHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHh---------CcCCChHHHHH
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEY--KIQPS----TEHYCCVADMLGRVGKVVEAYEFVKEL---------GEEGNVLEIWG 687 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~~ 687 (813)
.+...|++++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.+++++ +.+|+....++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566677777666665331 11222 556677777777777777777776664 44556666788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhc-----CCCCCCCchhHHH
Q 046631 688 SLLGSCRLHGHSELAEVVAKKLLE-----MDTRNSMPGYHVL 724 (813)
Q Consensus 688 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~~~ 724 (813)
.|+..|..+|++++|+.+++++++ .+|++ |.+-.+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H--p~~~~~ 415 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH--SLIEDL 415 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS--HHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC--hHHHHH
Confidence 888888888888888888888775 46665 555443
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.04 E-value=0.0029 Score=50.41 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=58.8
Q ss_pred HHHHHhccCCHHHHHHHHHHh-CcCCChHH-HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcC
Q 046631 656 VADMLGRVGKVVEAYEFVKEL-GEEGNVLE-IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEG 733 (813)
Q Consensus 656 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g 733 (813)
.+..+.+.|++++|++.++++ ...|+... +|..++.++...|++++|+..++++++++|++ +..+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS--PALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS--THHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHH--------H
Confidence 456677888888888888776 45666676 88888888888889999999999998888887 555421 3
Q ss_pred CcHHHHHHHHHHH
Q 046631 734 NWENVDKVRKEMR 746 (813)
Q Consensus 734 ~~~~A~~~~~~m~ 746 (813)
.+.++...+++..
T Consensus 76 ~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 76 MVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHh
Confidence 3445555554443
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.03 E-value=0.00033 Score=70.84 Aligned_cols=242 Identities=12% Similarity=0.119 Sum_probs=139.9
Q ss_pred CCcchHHHhhhcCCCCCcchHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHH
Q 046631 53 GRPHLARQLFDSITRPTTVIWNTIIIGFVCNNLPYEAILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCH 132 (813)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 132 (813)
++++.|.+.-++... +..|..+..+..+.+...+|++.|-+. + |+..|..++.++.+.|.+++-...+..
T Consensus 39 ~~ldRa~eyA~~~n~--p~VWs~LgkAqL~~~~v~eAIdsyIkA---~-----Dps~y~eVi~~A~~~~~~edLv~yL~M 108 (624)
T 3lvg_A 39 GNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIKA---D-----DPSSYMEVVQAANTSGNWEELVKYLQM 108 (624)
T ss_dssp CCSTTTTTSSSSCCC--CCCSSSHHHHTTTSSSCTTTTTSSCCC---S-----CCCSSSHHHHHTTTSSCCTTHHHHHHT
T ss_pred cccHHHHHHHHHhCC--ccHHHHHHHHHHccCchHHHHHHHHhC---C-----ChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445555554444433 334666666666666666665544222 2 555666666666666666666666665
Q ss_pred HHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhcccc----------cCCCChhHHHHHHcccCC--------------
Q 046631 133 FIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYVE----------VDYSKYDLVCKVFDTMRR-------------- 188 (813)
Q Consensus 133 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~~~g~~~~a~~~~~~~~~-------------- 188 (813)
.++.. -++.+-+.|+-+|+|.++..+-+.....+.. ...|.++.|.-+|..+..
T Consensus 109 aRk~~--ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y 186 (624)
T 3lvg_A 109 ARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 186 (624)
T ss_dssp TSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred HHHHh--cccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 55442 2334455666666666555544333211111 112555666666555431
Q ss_pred ----------CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHHHhCCC
Q 046631 189 ----------RNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLVKLGSE 258 (813)
Q Consensus 189 ----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 258 (813)
.++.+|-.+-.+|...+.+.-|.-.--.+. +.|| -...++..|-..|.+++-..+++..+...-
T Consensus 187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglglEr- 260 (624)
T 3lvg_A 187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLER- 260 (624)
T ss_dssp GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTT-
T ss_pred HHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCc-
Confidence 367789999999988888776654443333 2222 233456667788888888888776653221
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHhhc----CCC-------CcchHHHHHHHHHhCCCchHHHH
Q 046631 259 YVNDLFVASSAIFMYAELGCFDFARKIFDNC----LER-------NTEVWNTMIGGYVQNNHPVEAIE 315 (813)
Q Consensus 259 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~-------~~~~~~~li~~~~~~g~~~~A~~ 315 (813)
.....++-|.-.|++-. .++..+.++.. .-| ....|.-++-.|++-..++.|..
T Consensus 261 --AHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 261 --AHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp --CCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred --hhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 35677888888888763 44444433322 111 45568888888888777777754
No 217
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.86 E-value=1.8e-05 Score=79.75 Aligned_cols=459 Identities=13% Similarity=0.090 Sum_probs=253.0
Q ss_pred CChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHH
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLV 253 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 253 (813)
+++++|.+.-++.. .+..|+.+..+....+++.+|++-|-+ .-|...|..+|.++.+.|.++.-..++..+.
T Consensus 39 ~~ldRa~eyA~~~n--~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaR 110 (624)
T 3lvg_A 39 GNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMAR 110 (624)
T ss_dssp CCSTTTTTSSSSCC--CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTS
T ss_pred cccHHHHHHHHHhC--CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34444444444433 345688999999999999999887622 1366689999999999999999999988877
Q ss_pred HhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhH
Q 046631 254 KLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTF 333 (813)
Q Consensus 254 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~ 333 (813)
+.. .++.+-+.|+-+|++.+++.+..+.+ ..+|+.-...+..-|...|.++.|.-+| ..+.. |
T Consensus 111 k~~----ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKily-s~isN---------~ 173 (624)
T 3lvg_A 111 KKA----RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLY-NNVSN---------F 173 (624)
T ss_dssp TTC----CSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTG-GGSCC---------C
T ss_pred HHh----cccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHH-HhCcc---------H
Confidence 764 46677789999999999987755444 3467777788888899999999998888 33321 2
Q ss_pred HHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhH
Q 046631 334 LSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVT 413 (813)
Q Consensus 334 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 413 (813)
.-+...+.+.|++..|... +....++.+|..+-.+|...+.+.-|...--.+. +.|| .
T Consensus 174 akLAstLV~L~~yq~AVda-----------------ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--e 231 (624)
T 3lvg_A 174 GRLASTLVHLGEYQAAVDG-----------------ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--E 231 (624)
T ss_dssp TTTSSSSSSCSGGGSSTTT-----------------TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--C
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--H
Confidence 2333344555555544321 1123567778888888888887766644433332 1121 2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--chHHHHHHHHHhcCCHHHHHHHHhhcCCC--CC-------ChhhHH
Q 046631 414 VTALLSAASNLRNQDVGKQTHAYLLRHGIHFE--GMESYLIDMYAKSGLIKTARQIFEKNDSG--DR-------DQATWN 482 (813)
Q Consensus 414 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-------~~~~~~ 482 (813)
...++..|-..|.+++...+++..+ |.+.. .+++-|.-.|+|- +.++..+.++..-+. -| ....|.
T Consensus 232 L~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ 308 (624)
T 3lvg_A 232 LEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 308 (624)
T ss_dssp CSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHH
Confidence 2334555667777777777776655 33333 6667777777765 344444444432110 12 344688
Q ss_pred HHHHHHHhCCChHHHHHHH-------------HHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchh
Q 046631 483 AMIAGYTQNGLLEEAFVAF-------------RQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVF 549 (813)
Q Consensus 483 ~li~~~~~~~~~~~A~~~~-------------~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 549 (813)
-++-.|.+..+++.|.... .+.+. -..|...|-..|.-|....- ..-..++.-+ ...+++
T Consensus 309 ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~--KVaN~EiyYKAi~FYL~e~P-~lL~DLL~vL-~prlDh--- 381 (624)
T 3lvg_A 309 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKP-LLLNDLLMVL-SPRLDH--- 381 (624)
T ss_dssp HHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG--GCSCSHHHHHHHHHHTTSCC-TTSHHHHHHH-CTTCCS---
T ss_pred HHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH--HcchHHHHHHHHHHHHHhCh-HHHHHHHHhc-cccCCh---
Confidence 8888888888888775431 11111 02233333333333322210 0000000000 001111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHH-HHHHHHHhcCChHHHH------------HHHHHHHhCCCCCCHHH
Q 046631 550 VGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYT-TMILGYGQHGMSERAL------------SLFRSMKGCGIEPDAIT 616 (813)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~------------~~~~~m~~~g~~p~~~~ 616 (813)
+-.+..+.+.|++.-....+......|...-| ++-..|....+++.-. .+-+++.++. -...
T Consensus 382 --~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHe---L~eF 456 (624)
T 3lvg_A 382 --TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHE---LIEF 456 (624)
T ss_dssp --TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCS---SHHH
T ss_pred --HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCc---hHHH
Confidence 12233444455544444444444444444333 3344555555554322 2223333221 1111
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHh
Q 046631 617 FVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLH 696 (813)
Q Consensus 617 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 696 (813)
-..-...|.+.+++++++.+.+ ++ ++ |.-.++....+|+.+-|.++++-....++.- .+.+.+..|...
T Consensus 457 RrIAA~LYkkn~rw~qsi~l~K---kD-kl------ykDAietAa~S~~~elaeeLL~yFv~~g~~E-cF~a~LytCYdL 525 (624)
T 3lvg_A 457 RRIAAYLFKGNNRWKQSVELCK---KD-SL------YKDAMQYASESKDTELAEELLQWFLQEEKRE-CFGACLFTCYDL 525 (624)
T ss_dssp HHHHHHHHHTTCHHHHHSSCSS---TT-CC------TTGGGTTTTTCCCTTHHHHHHHHHHHHCSTH-HHHHHHHHTSSS
T ss_pred HHHHHHHHHhcccHHHHHHHHH---hc-cc------HHHHHHHHHHcCCHHHHHHHHHHHHHcCchH-HHHHHHHHHhhc
Confidence 2222234566777777765432 11 22 2223344556666666666666554444433 556666666555
Q ss_pred CCHHHHHHH
Q 046631 697 GHSELAEVV 705 (813)
Q Consensus 697 g~~~~a~~~ 705 (813)
=+.+.+.++
T Consensus 526 lrpDvVlEl 534 (624)
T 3lvg_A 526 LRPDVVLET 534 (624)
T ss_dssp SSCHHHHHH
T ss_pred cChHHHHHH
Confidence 555555444
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.82 E-value=0.0073 Score=51.49 Aligned_cols=86 Identities=15% Similarity=-0.048 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccC---CHHHHHHHHHHhCcC--C-ChHHHHHHHHHHHHHhCCHHHH
Q 046631 629 LVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVG---KVVEAYEFVKELGEE--G-NVLEIWGSLLGSCRLHGHSELA 702 (813)
Q Consensus 629 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~a 702 (813)
.+..+.+.|.+.... +. ++..+...+..++++.+ ++++++.++++.-.. | ...+.+..|.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344455555554432 22 45666666666666665 445666666655222 2 2344556666666666666666
Q ss_pred HHHHHHHhcCCCCC
Q 046631 703 EVVAKKLLEMDTRN 716 (813)
Q Consensus 703 ~~~~~~~~~~~p~~ 716 (813)
.+.++++++.+|++
T Consensus 91 ~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 66666666666665
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.73 E-value=0.0031 Score=50.25 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=54.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCCCCch-hHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 689 LLGSCRLHGHSELAEVVAKKLLEMDTRNSMPG-YHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 689 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
.+..+...|++++|+..++++++.+|.+ +. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVG--KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4567788999999999999999999998 88 99999999999999999999999998653
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.73 E-value=0.049 Score=54.30 Aligned_cols=136 Identities=14% Similarity=-0.005 Sum_probs=90.2
Q ss_pred CCHhHHHHHHHHHHh--cC---ChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhc----cC----cHHHHHHHHHHHHH
Q 046631 577 KNSVTYTTMILGYGQ--HG---MSERALSLFRSMKGCGIEPDAI-TFVAVLSACSY----AG----LVDEGLQIFDLMQQ 642 (813)
Q Consensus 577 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~----~g----~~~~a~~~~~~~~~ 642 (813)
.+..+|...+.+... .+ ...+|+.+|++.++ ..|+.. .+..+..++.. .+ ........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 366667766655432 22 34788999999988 677643 33333333321 10 11111112222111
Q ss_pred hcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 643 EYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 643 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
. ...| +..+|..+...+...|++++|+..++++ ..+|+.. .|..+...+...|+.++|.+.+++++.++|.+
T Consensus 270 ~-~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~-a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 L-PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp C-GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred c-ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 1 2234 5888988888888889999999999997 3445544 78888899999999999999999999999986
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.51 E-value=0.016 Score=49.48 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=58.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCCHHH
Q 046631 594 MSERALSLFRSMKGCGIEPDAITFVAVLSACSYAG---LVDEGLQIFDLMQQEYKIQP--STEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 594 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 668 (813)
....+.+-|.+..+.|. ++..+...+..++++++ ++++++.+++...+. . .| +...+-.|.-++.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHH
Confidence 34556666666666553 66666667777777777 666888888887765 2 25 25556667777788888888
Q ss_pred HHHHHHHh-CcCCChH
Q 046631 669 AYEFVKEL-GEEGNVL 683 (813)
Q Consensus 669 A~~~~~~~-~~~~~~~ 683 (813)
|.++++.+ ..+|+..
T Consensus 90 A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhcCCCCH
Confidence 88888776 4555544
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.50 E-value=0.19 Score=57.92 Aligned_cols=168 Identities=14% Similarity=0.077 Sum_probs=111.2
Q ss_pred HHHHHHCCCcHHHHH-HHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCH
Q 046631 383 ISAFVQNGLDDEGLM-LVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLI 461 (813)
Q Consensus 383 i~~~~~~g~~~~A~~-~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 461 (813)
.......+++++|.+ ++.. + ++......++..+.+.|..+.|.++.+.- ..-.......|++
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-----------~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ-----------DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-----------HHHHHHHHHHTCH
T ss_pred HhHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc-----------chheehhhhcCCH
Confidence 344456788888877 5521 1 11222366677777888888877655311 1224556789999
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 046631 462 KTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIR 541 (813)
Q Consensus 462 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 541 (813)
++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....+-+....
T Consensus 669 ~~A~~~~~~~~----~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 669 TLARDLLTDES----AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHHHTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999987765 567999999999999999999999998753 33344444456666666665555555
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 046631 542 YLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRS 604 (813)
Q Consensus 542 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 604 (813)
.|. ++....+|.+.|++++|.+++. +.+++++|..+-+.
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~------------------~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLI------------------KSQRFSEAAFLGST 774 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHH------------------HTTCHHHHHHHHHH
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHH------------------HcCChHHHHHHHHH
Confidence 442 4445556667777777766653 45667777766554
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.33 E-value=0.023 Score=45.60 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=57.0
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHhCc--------CCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCch
Q 046631 649 STEHYCCVADMLGRVGKVVEAYEFVKELGE--------EGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPG 720 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 720 (813)
+..-...|+..+.+.|+++.|..+++.... .....+++..|..++.+.|+++.|...+++++++.|++ +.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~--~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH--QR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HH
Confidence 445556778888888888888888777521 12455689999999999999999999999999999998 55
Q ss_pred hHH
Q 046631 721 YHV 723 (813)
Q Consensus 721 ~~~ 723 (813)
+..
T Consensus 82 ~~~ 84 (104)
T 2v5f_A 82 ANG 84 (104)
T ss_dssp HHH
T ss_pred HHh
Confidence 533
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.22 E-value=0.038 Score=43.08 Aligned_cols=68 Identities=13% Similarity=-0.036 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHHhccCC---HHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 649 STEHYCCVADMLGRVGK---VVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 649 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
++..+..++.++...++ .++|..++++. ..+|+.+..+..++..+.+.|++++|+..++++++.+|.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 46667777777654443 67777777765 5667666677777888888888888888888888887774
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.16 Score=44.39 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=80.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 046631 556 DMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQ 635 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~ 635 (813)
+....+|+++.|.++.+++ .+...|..|......+|+++-|.+.|.+... |..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456778888888887765 4567888888888888888888888887654 4444445556677666555
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 046631 636 IFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKL 709 (813)
Q Consensus 636 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 709 (813)
+-+....+ | -++.....+.-.|+++++.+++.+...-|... -....+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~-------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY-------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH-------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH-------HHHHHcCcHHHHHHHHHHh
Confidence 44433322 2 24455566667788888888777653311111 1123355566666665544
No 226
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.96 E-value=2.4 Score=46.07 Aligned_cols=307 Identities=9% Similarity=-0.009 Sum_probs=143.6
Q ss_pred HHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--chHHHHHHHHHhcCCHHHH
Q 046631 387 VQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE--GMESYLIDMYAKSGLIKTA 464 (813)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A 464 (813)
.+.|+++.+..+...+...-+. .-..|..+...+. ....+ ++...+.+..-.+- .+...-+..+.+.+++...
T Consensus 17 ~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l~-~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDLM-NQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTGG-GCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCcc-cCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHH
Confidence 4567777776666555332221 1123333322221 11222 44444444433332 4556667777888888887
Q ss_pred HHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHH--HHHHHHHHHHc
Q 046631 465 RQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIEL--GKQLHGFSIRY 542 (813)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~--a~~~~~~~~~~ 542 (813)
..++.. . ..+...--....+....|+..+|......+-..| .........++..+.+.|.+.. ...=+..+...
T Consensus 92 l~~~~~-~--p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~ 167 (618)
T 1qsa_A 92 LAFSPE-K--PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKA 167 (618)
T ss_dssp HHHCCS-C--CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHhccC-C--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Confidence 776554 2 2233333334566777888777777777665554 2223334455555554443321 11111111111
Q ss_pred C-----------CCCch-hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHh---HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046631 543 L-----------LDQNV-FVGTSLIDMYSKSGVINYAANVFAKIPEKNSV---TYTTMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 543 ~-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
| +.++. .....++..+.+. ..+....... .++.. .+...+.-+.+ .+.+.|...|.....
T Consensus 168 ~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~ 242 (618)
T 1qsa_A 168 GNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQ 242 (618)
T ss_dssp TCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhh
Confidence 1 11111 1111222222111 1112221111 11111 11111222222 366778888877754
Q ss_pred CCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhCcCC-Ch
Q 046631 608 CGIEPDAIT----FVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKELGEEG-NV 682 (813)
Q Consensus 608 ~g~~p~~~~----~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 682 (813)
.+ ..+... ...+.......+...++...+...... .++.......+....+.|+++.|...|+.|...+ ..
T Consensus 243 ~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~ 318 (618)
T 1qsa_A 243 AQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEK 318 (618)
T ss_dssp HT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGS
T ss_pred cc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHHHHHHHcccccccc
Confidence 32 223222 222332333444344555555554432 2333333444444556788888888888886543 22
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 046631 683 LEIWGSLLGSCRLHGHSELAEVVAKKLLE 711 (813)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 711 (813)
......+..++...|+.++|..+++++.+
T Consensus 319 ~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 319 DEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 32344556666777888888888887764
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.83 E-value=0.61 Score=38.12 Aligned_cols=140 Identities=10% Similarity=0.100 Sum_probs=90.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHH
Q 046631 590 GQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEA 669 (813)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 669 (813)
.-.|..++..++..+.... .+..-++-+|--....-+-+-..+.++.+-+-|.+. .+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 4457777777777777653 233334444433333344455555555554333322 34444444
Q ss_pred HHHHHHhCcCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 670 YEFVKELGEEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
..-+-.+... . ...+.-+..+..+|+-++-.+++..++.-++.+ |....-++.+|.+.|+..+|.+++.++=++|
T Consensus 81 i~C~~~~n~~--s-e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~--~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 81 VECGVINNTL--N-EHVNKALDILVIQGKRDKLEEIGREILKNNEVS--ASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHTTCC--C-HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcch--H-HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCC--hHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4444443221 1 145556777788899999999999976666555 8999999999999999999999999999998
Q ss_pred Cc
Q 046631 750 LR 751 (813)
Q Consensus 750 ~~ 751 (813)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 75
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.81 E-value=0.36 Score=55.59 Aligned_cols=130 Identities=8% Similarity=0.007 Sum_probs=78.0
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChH
Q 046631 517 ASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSE 596 (813)
Q Consensus 517 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 596 (813)
..++..+.+.|..+.|.++.+. . ..-.......|++++|.++.+.+. +...|..|...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 4444555555666655554321 1 111344567899999999887664 5678999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 597 RALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 597 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
.|.+.|.++.. |..+...+...|+.+...++.+..... | .++....+|.+.|++++|++++.++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 99999888754 334444445566665554444333322 1 1233344455566666666655544
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.75 E-value=0.047 Score=52.02 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=56.0
Q ss_pred HHHHHHHHHHh-CcCCC--hHHHHHHHHHHHHH-----hCCHHHHHHHHHHHhcCCCC-CCCchhHHHHHHHHHhc-CCc
Q 046631 666 VVEAYEFVKEL-GEEGN--VLEIWGSLLGSCRL-----HGHSELAEVVAKKLLEMDTR-NSMPGYHVLLSNIYAEE-GNW 735 (813)
Q Consensus 666 ~~~A~~~~~~~-~~~~~--~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~-~~~~~~~~~l~~~~~~~-g~~ 735 (813)
..+|...+++. ..+|. ....|..|+..|.+ -|+.++|++.|+++++++|+ + ...++.+++.|+.. |+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~--id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD--PDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC--SHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHhcCCH
Confidence 34455545443 44454 22266666666666 37888888888888888884 4 67777777777774 778
Q ss_pred HHHHHHHHHHHHCCCc
Q 046631 736 ENVDKVRKEMRERGLR 751 (813)
Q Consensus 736 ~~A~~~~~~m~~~~~~ 751 (813)
++|.+.+++.....+.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888765543
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.67 E-value=0.21 Score=40.82 Aligned_cols=94 Identities=16% Similarity=-0.056 Sum_probs=68.5
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHH---HHHHHHHhCcCC---ChHHHHHHHHHHHHHhCCHHH
Q 046631 628 GLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVE---AYEFVKELGEEG---NVLEIWGSLLGSCRLHGHSEL 701 (813)
Q Consensus 628 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 701 (813)
..+..+.+.|.+.... |. |+..+-..+..++.+..+..+ ++.+++++-... ...+....|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344555555555443 33 677777788888888886655 888888875443 234467788899999999999
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHH
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLL 725 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l 725 (813)
|.+.++.+++.+|++ ..+..+.
T Consensus 93 A~~~~~~lL~~eP~n--~QA~~Lk 114 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQN--NQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHCTTC--HHHHHHH
T ss_pred HHHHHHHHHHhCCCC--HHHHHHH
Confidence 999999999999998 6554443
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.36 E-value=1 Score=39.42 Aligned_cols=105 Identities=13% Similarity=0.088 Sum_probs=67.4
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHH
Q 046631 452 IDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIEL 531 (813)
Q Consensus 452 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 531 (813)
.+...++|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 344567888888888887764 567899999999999999999988887543 2233333444556555
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046631 532 GKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP 575 (813)
Q Consensus 532 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (813)
...+-+.....|- ++.....+.-.|+++++.++|.+..
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5554444444431 4444555556666666666665443
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.20 E-value=0.12 Score=42.35 Aligned_cols=81 Identities=9% Similarity=-0.051 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHh-CcCCChHHHHHHHHHHHHHhCCHHH---HHHHHHHHhcCC-C-CCCCchhHHHHHHHHHhcCCcHHH
Q 046631 665 KVVEAYEFVKEL-GEEGNVLEIWGSLLGSCRLHGHSEL---AEVVAKKLLEMD-T-RNSMPGYHVLLSNIYAEEGNWENV 738 (813)
Q Consensus 665 ~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~~~l~~~~~~~g~~~~A 738 (813)
.+..+.+.+.+. ...+...++-..+.|++.+..+... ++.+++.++..+ | .. ..+...|+-.+.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~--Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ--RDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH--HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHhhhHHHH
Confidence 344444444443 2223444477788899988876555 999999999887 5 33 67788899999999999999
Q ss_pred HHHHHHHHH
Q 046631 739 DKVRKEMRE 747 (813)
Q Consensus 739 ~~~~~~m~~ 747 (813)
.+..+.+.+
T Consensus 94 ~~~~~~lL~ 102 (126)
T 1nzn_A 94 LKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999995
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.02 E-value=0.033 Score=53.11 Aligned_cols=107 Identities=10% Similarity=0.102 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhcc-----CCHHHHHHHHHHh-CcCCCh-HHHHHHHHHHHHHh-CC
Q 046631 630 VDEGLQIFDLMQQEYKIQPS---TEHYCCVADMLGRV-----GKVVEAYEFVKEL-GEEGNV-LEIWGSLLGSCRLH-GH 698 (813)
Q Consensus 630 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~~~~-~~~~~~l~~~~~~~-g~ 698 (813)
..+|...+++.. .+.|+ -..|..|+..|.+. |+.++|.+.|++. ...|+. .+++......++.. |+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 345555555555 34665 44677777777763 7777777777775 455543 44666677776664 77
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 699 SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 699 ~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
.+++.+.+++++...|... |. ..+.+.. +-++|..+++++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~-P~--~~lan~~----~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESV-PH--NKLLVIL----SQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGC-SS--CHHHHHH----HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCC-CC--hhHHHHH----HHHHHHHHHHHhH
Confidence 8888888888888777621 11 1222332 2356666665554
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.51 E-value=0.24 Score=39.50 Aligned_cols=64 Identities=13% Similarity=-0.049 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCC-----CCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDT-----RNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
-...|+..+...|+++.|...++++++..+ ....+..+..|+.+|.+.|++++|..+++++.+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345788899999999999999999987531 1122667889999999999999999999999853
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.42 E-value=0.66 Score=38.62 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
....|.-++.+.|++++|.+..+.+++.+|++
T Consensus 79 cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 79 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 34444444444555555555555555555544
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.36 E-value=0.33 Score=39.84 Aligned_cols=61 Identities=5% Similarity=-0.089 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhCC---HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 685 IWGSLLGSCRLHGH---SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 685 ~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
+-..+.|++.+..+ ..+++.+++.++..+|.. ...++..|+-.+.+.|++++|.++.+.+.
T Consensus 42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44445555555443 234666666666555521 03455556666666666666666666666
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.35 E-value=0.43 Score=52.87 Aligned_cols=59 Identities=15% Similarity=-0.005 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 686 WGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 686 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
...-...|...|+++.|+.++++++..-|.+ ...+..|+.+|.+.|+|+.|+-.+..+.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse--F~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDS--FESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchh--hHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3334566777899999999999999999998 8899999999999999999999888774
No 238
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.25 E-value=12 Score=36.66 Aligned_cols=124 Identities=13% Similarity=0.080 Sum_probs=74.1
Q ss_pred CChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHH----HHHHHCCCCCCHhhHHHHHHHhhCCCChh-----H
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQF----RMMLRMGIRPSTISFVNVFPALSSLGDYK-----S 244 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-----~ 244 (813)
+++++|.+++-. -...+.+.|+...|-++. +...+.++++|..+...++..+.....-+ -
T Consensus 49 k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~f 117 (336)
T 3lpz_A 49 GNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRF 117 (336)
T ss_dssp TCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred cCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHH
Confidence 888888887532 234566678777766655 55566788999888888888776655322 1
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCC
Q 046631 245 ADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNN 308 (813)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 308 (813)
..+...+-.+.|..-.-|+.....+...|.+.+++.+|+..|=....+.+..+..++..+...+
T Consensus 118 i~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 118 VKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 2223334444442211467777778888888888888887774222222345544444443333
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.09 E-value=12 Score=36.39 Aligned_cols=167 Identities=7% Similarity=0.030 Sum_probs=95.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHhc
Q 046631 449 SYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVA----FRQMLEHNVTPNVVTIASVLPACN 524 (813)
Q Consensus 449 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~t~~~ll~~~~ 524 (813)
.++..=|.+.+++++|++++..-. ..+.+.|+...|-++ .+-..+.+++++......++..+.
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga-------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGA-------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 346667788888888887765432 234555665555443 344445677777777766666655
Q ss_pred cCCChH-HHHHHHHHHHH----cC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhc---CC
Q 046631 525 PMGNIE-LGKQLHGFSIR----YL--LDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQH---GM 594 (813)
Q Consensus 525 ~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 594 (813)
....-+ .=..+.+.+++ .| -.-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 432111 12333344433 22 2347778888899999999999999887633222455555555444443 33
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046631 595 SERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQE 643 (813)
Q Consensus 595 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 643 (813)
..++--. .-..++ -|.-.|++..|..+++...+.
T Consensus 184 ~~e~dlf--------------~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAEF--------------FSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHH--------------HHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHHH--------------HHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 2222111 111122 345678888888888876644
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.00 E-value=2.9 Score=34.33 Aligned_cols=75 Identities=16% Similarity=0.066 Sum_probs=54.6
Q ss_pred CCChhHHHHHHHHHhccCCH---HHHHHHHHHhC-cCC-ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchh
Q 046631 647 QPSTEHYCCVADMLGRVGKV---VEAYEFVKELG-EEG-NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGY 721 (813)
Q Consensus 647 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 721 (813)
.|+..+-..+..++.+..+. .+++.+++++- ..| ...+.+..|.-++.+.|++++|.+..+.+++.+|++ ..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N--~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN--KQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC--HHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC--HHH
Confidence 35666666667777766643 45666766652 333 344578889999999999999999999999999998 554
Q ss_pred HH
Q 046631 722 HV 723 (813)
Q Consensus 722 ~~ 723 (813)
..
T Consensus 115 ~~ 116 (134)
T 3o48_A 115 GA 116 (134)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.69 E-value=1.7 Score=37.32 Aligned_cols=55 Identities=16% Similarity=0.019 Sum_probs=25.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCC-------hhHHHHHHHHHhccCCHHHHHHHHHH
Q 046631 621 LSACSYAGLVDEGLQIFDLMQQEYKIQPS-------TEHYCCVADMLGRVGKVVEAYEFVKE 675 (813)
Q Consensus 621 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~ 675 (813)
+..+...|.++.|+-+.+.+....+-.|+ ..++..+++++...|++..|...|++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 33444455555555544443322122222 22444555555555555555555554
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.63 E-value=6.2 Score=32.39 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=87.2
Q ss_pred HHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHH
Q 046631 387 VQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQ 466 (813)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 466 (813)
.-.|..++..+++.+..... +..-|+.+|.-....-+-+-..++++.+-+ ..+ ...||++.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD---------is~C~NlKrVi~ 82 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD---------LDKCQNLKSVVE 82 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC---------GGGCSCTHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhh---hcC---------cHhhhcHHHHHH
Confidence 44678888888888876642 334455555444444444444444443322 222 122333333333
Q ss_pred HHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCC
Q 046631 467 IFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLD 545 (813)
Q Consensus 467 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 545 (813)
.+-.+. .+....+.-++.+...|+-++..+++.++.. +.+|+......+..||.+.|+..++.+++.+.-+.|++
T Consensus 83 C~~~~n---~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhc---chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 333332 3444566667888888999988888888644 34778888888888999999999988888888777753
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.53 E-value=0.98 Score=38.78 Aligned_cols=32 Identities=6% Similarity=-0.010 Sum_probs=16.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhCcCCChH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKELGEEGNVL 683 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 683 (813)
.--.+..+|.+.|++++|+.+++.++..-..+
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 33345555555666666666655554444333
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.38 E-value=6.6 Score=40.86 Aligned_cols=316 Identities=9% Similarity=0.034 Sum_probs=156.4
Q ss_pred CCcHHHHHHHHHHHHC-----CCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHH----HHHHhcCC
Q 046631 390 GLDDEGLMLVYEMQKQ-----GFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLI----DMYAKSGL 460 (813)
Q Consensus 390 g~~~~A~~~~~~m~~~-----g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~ 460 (813)
|++++|++.+-.+.+. +..........++..|...++++...+.+..+.+...........++ ........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5678888877666542 23445666778888898999998887777766655433332233333 33333333
Q ss_pred HH--HHHHHHhhcCCCCC---C-----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChH
Q 046631 461 IK--TARQIFEKNDSGDR---D-----QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIE 530 (813)
Q Consensus 461 ~~--~A~~~~~~~~~~~~---~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 530 (813)
.+ .-..+.+.+..... - ......|...|...|++.+|.+++.++...-...+....
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~-------------- 175 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE-------------- 175 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH--------------
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH--------------
Confidence 22 22333333321111 1 112355677788888888888888887542111111110
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----C---CC--HhHHHHHHHHHHhcCChHHHHH
Q 046631 531 LGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP-----E---KN--SVTYTTMILGYGQHGMSERALS 600 (813)
Q Consensus 531 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~---~~--~~~~~~li~~~~~~g~~~~A~~ 600 (813)
-+..+...+..|...+++.+|..++.++. . |+ ...+..++..+...+++.+|..
T Consensus 176 ----------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~ 239 (445)
T 4b4t_P 176 ----------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQ 239 (445)
T ss_dssp ----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 01123333444555555555555544432 0 11 2234555556666667766666
Q ss_pred HHHHHHhC-CCCCCHHHHH----HHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc--CCHHHHHHHH
Q 046631 601 LFRSMKGC-GIEPDAITFV----AVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRV--GKVVEAYEFV 673 (813)
Q Consensus 601 ~~~~m~~~-g~~p~~~~~~----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~ 673 (813)
.|.+.... ...-|...+. .++....-.+....-..++...... ..-++...|..++.+|... .+|+.+.+.+
T Consensus 240 ~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~-~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~ 318 (445)
T 4b4t_P 240 YLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND-NNLKKLESQESLVKLFTTNELMRWPIVQKTY 318 (445)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH-SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHT
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc-ccccccHHHHHHHHHHHhchHhhhHHHHHHH
Confidence 66655431 0111221111 1111111111111112222233333 2234577788888888754 4677777777
Q ss_pred HHhCcC-CCh------HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 674 KELGEE-GNV------LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 674 ~~~~~~-~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
...-.. +.. ..-|..|......|+ ...+.+ |-. ......++..+.- ..++++..+.+|.
T Consensus 319 ~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehn-----l~~i~k-----~Ys--~I~l~~la~lL~l--~~~evE~~ls~mI 384 (445)
T 4b4t_P 319 EPVLNEDDLAFGGEANKHHWEDLQKRVIEHN-----LRVISE-----YYS--RITLLRLNELLDL--TESQTETYISDLV 384 (445)
T ss_dssp CSSTTTCCSSCCCSCSSHHHHHHHHHHHHHH-----HHHHHH-----HEE--EEEHHHHHHHHTS--CHHHHHHHHHHHH
T ss_pred HHHhcccchhhhcchhhHHHHHHHHHHHHHH-----HHHHHH-----Hhc--eeeHHHHHHHhCc--CHHHHHHHHHHHH
Confidence 654221 111 114555555554332 111111 111 3334555555532 4678899999998
Q ss_pred HCCC
Q 046631 747 ERGL 750 (813)
Q Consensus 747 ~~~~ 750 (813)
..|.
T Consensus 385 ~~g~ 388 (445)
T 4b4t_P 385 NQGI 388 (445)
T ss_dssp HHTS
T ss_pred HCCC
Confidence 7663
No 245
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.29 E-value=1.5 Score=36.81 Aligned_cols=53 Identities=9% Similarity=0.001 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHhC-cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 664 GKVVEAYEFVKELG-EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 664 g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
++.++|.++|+.+. ....-.-+|-.....-.++|+...|.+++.+++.+.|.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56666666666651 122224488888888889999999999999999999987
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.22 E-value=14 Score=35.84 Aligned_cols=103 Identities=10% Similarity=0.059 Sum_probs=63.8
Q ss_pred CChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHH----HHHHHHCCCCCCHhhHHHHHHHhhCCCC--h---hH
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQ----FRMMLRMGIRPSTISFVNVFPALSSLGD--Y---KS 244 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~---~~ 244 (813)
+++++|.+++-. -...+.+.|++..|-++ .+...+.+++++......++..+..... . +-
T Consensus 47 ~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~f 115 (312)
T 2wpv_A 47 KSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDV 115 (312)
T ss_dssp TCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHH
T ss_pred cCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHH
Confidence 788888877532 23445667887776665 4555667888888888877777655331 1 22
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHh
Q 046631 245 ADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFD 287 (813)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 287 (813)
..+...+..+.|..-.-++.....+...|.+.|++.+|+..|-
T Consensus 116 i~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 116 ITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 2333333344432111366777777777887777777777664
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.02 E-value=5.6 Score=33.09 Aligned_cols=62 Identities=15% Similarity=0.045 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 612 PDAITFVAVLSACSYAG---LVDEGLQIFDLMQQEYKIQPS--TEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 612 p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
|+..+-..+..++.++. +..+++.+++.+.+. .|+ ....-.|.-++.+.|++++|.++.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44444444444444433 233445555544433 231 233334444455555555555555543
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.74 E-value=3.5 Score=49.15 Aligned_cols=143 Identities=13% Similarity=0.046 Sum_probs=68.7
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----C-----H---------
Q 046631 518 SVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEK----N-----S--------- 579 (813)
Q Consensus 518 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-----~--------- 579 (813)
.++..+...+..+.+..+.... +.+....-.+..+|..+|++++|.+.|++.... + .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3445555556665555443221 223333345566677888888888888776421 0 0
Q ss_pred --------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCC
Q 046631 580 --------VTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDA----ITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQ 647 (813)
Q Consensus 580 --------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 647 (813)
.-|..++..+.+.+.++.++++-+..++..-.-+. ..|..+..++...|++++|...+-.+-.. .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 11334444455555555555555544432111111 12444455555555555555554444321 1
Q ss_pred CChhHHHHHHHHHhccCCHHH
Q 046631 648 PSTEHYCCVADMLGRVGKVVE 668 (813)
Q Consensus 648 p~~~~~~~l~~~~~~~g~~~~ 668 (813)
--...+..|+..++..|..++
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHhCCChhh
Confidence 123344445555555554433
No 249
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.51 E-value=1.1 Score=37.63 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=45.3
Q ss_pred HhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCCc
Q 046631 695 LHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGLR 751 (813)
Q Consensus 695 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 751 (813)
..+|.++|..+|+.++..... ++..++..+..-.++|+...|.+++.+....+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKk--FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKK--FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTT--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 337999999999999887333 3777888888888999999999999999987653
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.48 E-value=24 Score=36.62 Aligned_cols=185 Identities=9% Similarity=0.056 Sum_probs=122.7
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHc-CCCCchh--HHHHHHHHHHhcCC
Q 046631 492 GLLEEAFVAFRQMLE-----HNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRY-LLDQNVF--VGTSLIDMYSKSGV 563 (813)
Q Consensus 492 ~~~~~A~~~~~~m~~-----~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~li~~~~~~g~ 563 (813)
|++++|++.+-.+.+ .+..........++..|...++++...+.+..+.+. |..+... ..+.+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 778999988766654 234556677888999999999999988877766654 4333221 22223333333333
Q ss_pred H--HHHHHHHhhCCC---C-------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCH---HHHHHHHHHHhc
Q 046631 564 I--NYAANVFAKIPE---K-------NSVTYTTMILGYGQHGMSERALSLFRSMKGC--GIEPDA---ITFVAVLSACSY 626 (813)
Q Consensus 564 ~--~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~~~~~ll~a~~~ 626 (813)
. +.-..+.+.+.. . .......|...|...|++.+|..++.++... |..... ..+..-++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2 233344444331 1 1224466788899999999999999998643 322221 256667778999
Q ss_pred cCcHHHHHHHHHHHHHh-cCCCC--C--hhHHHHHHHHHhccCCHHHHHHHHHHh
Q 046631 627 AGLVDEGLQIFDLMQQE-YKIQP--S--TEHYCCVADMLGRVGKVVEAYEFVKEL 676 (813)
Q Consensus 627 ~g~~~~a~~~~~~~~~~-~~~~p--~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 676 (813)
.+++.+|..++.++... +...+ + ...+.+.+..+...+++.+|...|.++
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999987532 12222 2 456788888999999999998877665
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.80 E-value=35 Score=34.48 Aligned_cols=92 Identities=10% Similarity=-0.047 Sum_probs=42.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHhc-CCCCCh----hHH
Q 046631 584 TMILGYGQHGMSERALSLFRSMKGCGIEPDA-----ITFVAVLSACSYAGLVDEGLQIFDLMQQEY-KIQPST----EHY 653 (813)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~----~~~ 653 (813)
-++..|...|++.+|.+++.++.+.=-..|. ..+..-+..|...+++.++...+....... .+.+++ ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 3455566666666666666655542111111 123333445555666666666655554321 111221 122
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHH
Q 046631 654 CCVADMLG-RVGKVVEAYEFVKE 675 (813)
Q Consensus 654 ~~l~~~~~-~~g~~~~A~~~~~~ 675 (813)
.+-+..+. ..++|.+|...|-+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHH
Confidence 22333344 55666666555444
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.49 E-value=9.3 Score=38.64 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046631 550 VGTSLIDMYSKSGVINYAANVFAKIP 575 (813)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (813)
....|...|.+.|+.++..+++....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45567777778888777777776654
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.48 E-value=35 Score=33.34 Aligned_cols=166 Identities=11% Similarity=0.046 Sum_probs=94.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHhc
Q 046631 449 SYLIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAF----RQMLEHNVTPNVVTIASVLPACN 524 (813)
Q Consensus 449 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~t~~~ll~~~~ 524 (813)
.++..=|.+.+++++|++++..-. ..+.+.|+..-|-++- +-..+.++++|..+...++..+.
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA-------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVS-------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 346666777888888877765422 2344555555444433 33445667777777666666665
Q ss_pred cCCChH-HHHHHHHHHHH----cC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHH
Q 046631 525 PMGNIE-LGKQLHGFSIR----YL--LDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSER 597 (813)
Q Consensus 525 ~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 597 (813)
....-+ .=..+.+.+++ .| -.-|+.....+...|.+.+++.+|+..|-.-.++.+..+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 544311 11223333332 23 344677888889999999999999998853223334566555544444332111
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046631 598 ALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQ 642 (813)
Q Consensus 598 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 642 (813)
++...-..++ -|...+++..|..+++...+
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1111222222 35567788888887766654
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.36 E-value=7.1 Score=39.78 Aligned_cols=73 Identities=8% Similarity=0.057 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hcCCCCChhHHHH
Q 046631 582 YTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQ----EYKIQPSTEHYCC 655 (813)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~ 655 (813)
...++..+...|++++|+..++.+.... +-++..+..++.++...|+..+|++.|+...+ +.|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3445666777888888888888877642 44666888888888888888888888877644 3588887665433
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.18 E-value=5.7 Score=37.24 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=71.3
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh-CcCCChHH---HHHHHHHHHHHhC
Q 046631 623 ACSYAGLVDEGLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL-GEEGNVLE---IWGSLLGSCRLHG 697 (813)
Q Consensus 623 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~---~~~~l~~~~~~~g 697 (813)
...+.|+++++++....-++. .| |...-..|+..||-.|+|+.|.+-++.+ ...|.... .|..++.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~------ 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK------ 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH------
Confidence 456788999999888877765 57 5888888999999999999999888776 33443321 2333332
Q ss_pred CHHHHHHHHHHHhcCC--CCC--CCchhHHHHHHH--HHhcCCcHHHHHHHHHHHHC
Q 046631 698 HSELAEVVAKKLLEMD--TRN--SMPGYHVLLSNI--YAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~--p~~--~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~ 748 (813)
|+..-.+++.-+ |.- ..+.....+..+ ....|+.++|.++..++.+.
T Consensus 77 ----aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 ----AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 333333444322 110 003333444333 44569999999999988765
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.63 E-value=6.6 Score=30.24 Aligned_cols=60 Identities=12% Similarity=0.035 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHH
Q 046631 393 DEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLI 452 (813)
Q Consensus 393 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 452 (813)
-+..+-++.+....+.|++......+++|.+.+++..|.++++.+...--....+|..++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 356667777777889999999999999999999999999999888765433345555554
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=82.44 E-value=5.4 Score=44.25 Aligned_cols=125 Identities=9% Similarity=0.034 Sum_probs=76.2
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHhhCCC--CCHhH--HHHHHHHHHhcC-ChHHHHHHHHHHHhC------CCCCCHH---
Q 046631 551 GTSLIDMYSKSGV-INYAANVFAKIPE--KNSVT--YTTMILGYGQHG-MSERALSLFRSMKGC------GIEPDAI--- 615 (813)
Q Consensus 551 ~~~li~~~~~~g~-~~~A~~~~~~~~~--~~~~~--~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~p~~~--- 615 (813)
...++..+.-.|+ .+.|..+|+++.+ |.... ...++..+...+ +--+|++++.+..+. ...+...
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555666 5778888888763 32222 223333333333 234567777666531 1122111
Q ss_pred --------HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhCc
Q 046631 616 --------TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKELGE 678 (813)
Q Consensus 616 --------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 678 (813)
....=..-|...|+++-|+++-++.. .+.|+ ..+|..|+.+|...|+++.|+-.++.++.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 11111334567888888888888877 44775 88888888999999999998888888864
No 258
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=82.34 E-value=43 Score=36.45 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=27.6
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 046631 379 WNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASN 423 (813)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 423 (813)
-.++|-.+.++|++++|.++.++.... +.--...|...+..++.
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 457888899999999999999776432 11112355556666654
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.48 E-value=7.2 Score=30.03 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 493 LLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
+.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++++-++...-. ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHH
Confidence 34456677777778888999999999999999999999999999888765322 2345665554
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.63 E-value=16 Score=28.05 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=47.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIA 517 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~ 517 (813)
-+..+...|++++|..+.+... .||...|-+|-.. +.|-.+++...+.++...| .|....|.
T Consensus 46 R~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 46 RLSSLMNRGDYASALQQGNKLA--YPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 4556778999999999999998 8999999887544 6677788888887777766 45544443
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.15 E-value=15 Score=28.12 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=48.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 046631 451 LIDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIA 517 (813)
Q Consensus 451 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~ 517 (813)
-+..+...|++++|..+.+... .||...|-+|-. .+.|-.+++...+.++...| .|....|.
T Consensus 45 R~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 45 RISSLANQGRYQEALAFAHGNP--WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 4556778999999999999888 899999988754 47788888888888887776 55555443
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.86 E-value=20 Score=27.46 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=45.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046631 555 IDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFV 618 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 618 (813)
+..+.+.|++++|..+.+...-||...|-+|.. .+.|-.+++..-+.++..+| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345678899999999999888899999887755 46777788888787877766 44444443
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.29 E-value=21 Score=27.40 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=44.5
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 046631 555 IDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFV 618 (813)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 618 (813)
+..+.+.|++++|..+.+...-||...|-+|... +.|-.+++..-+.++..+| .|....|.
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3456788999999999998888899888877553 6677777777777777665 44444443
No 264
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=75.40 E-value=6.5 Score=40.07 Aligned_cols=60 Identities=7% Similarity=-0.069 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 046631 685 IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMR 746 (813)
Q Consensus 685 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 746 (813)
+...++..+...|+++++...++.++..+|-+ -..+..+..+|...|+..+|.+.|+.+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~--E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYR--EPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555666677777777777777777766 5566666667777777777777666654
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.62 E-value=21 Score=31.85 Aligned_cols=50 Identities=8% Similarity=-0.001 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 699 SELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 699 ~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
......+|..+...+.....+.+|...+..+...|++++|.++++.-.+.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33444444444433332222444444555555555555555555444433
No 266
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=73.76 E-value=1.3e+02 Score=34.30 Aligned_cols=232 Identities=10% Similarity=0.024 Sum_probs=123.9
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHCCC--C-----CCHhHHHHHHHHHh--cCCChHHHHHHHHHHHHhCCCCc--ch
Q 046631 379 WNTMISAFVQNGLDDEGLMLVYEMQKQGF--M-----IDSVTVTALLSAAS--NLRNQDVGKQTHAYLLRHGIHFE--GM 447 (813)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----pd~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~--~~ 447 (813)
-..+.-+....|..+++..++.......- . +....-..+--+++ ..++. ++...+..++....... ..
T Consensus 414 GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-ev~e~L~~~L~dd~~~~~~~A 492 (963)
T 4ady_A 414 GSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-EVYEALKEVLYNDSATSGEAA 492 (963)
T ss_dssp HHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-HHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHhcCCHHHHHHH
Confidence 34455566777777788887777654321 0 11111222222233 33333 34444444443322111 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH---HHHHHh
Q 046631 448 ESYLIDMYAKSGLIKTARQIFEKNDSGDRD-QATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIA---SVLPAC 523 (813)
Q Consensus 448 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~---~ll~~~ 523 (813)
.-+|...+.-.|+-+....++..+.....+ +.-.-.+.-++...|+.+.+..+.+.+.... .| ..-|. .+.-+|
T Consensus 493 alALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAy 570 (963)
T 4ady_A 493 ALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHT
T ss_pred HHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHh
Confidence 234455566677777777777754322222 2223344455667888888888888877641 22 22333 344567
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCHhHHHH--HHHHHHhcCCh-HHHH
Q 046631 524 NPMGNIELGKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIP-EKNSVTYTT--MILGYGQHGMS-ERAL 599 (813)
Q Consensus 524 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~--li~~~~~~g~~-~~A~ 599 (813)
+..|+......++..+.... ..++.....+.-++.-.|+.+.+.++++.+. ..|...-.. +.-+....|.. .+++
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHH
Confidence 88899888888888887642 1223322222223344677777777776554 234443333 33344444443 6788
Q ss_pred HHHHHHHhCCCCCCHHHH
Q 046631 600 SLFRSMKGCGIEPDAITF 617 (813)
Q Consensus 600 ~~~~~m~~~g~~p~~~~~ 617 (813)
.++..+.. .+|..+-
T Consensus 650 d~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 650 DVLDPLTK---DPVDFVR 664 (963)
T ss_dssp HHHHHHHT---CSSHHHH
T ss_pred HHHHHHcc---CCCHHHH
Confidence 88888875 4555543
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.93 E-value=20 Score=37.08 Aligned_cols=58 Identities=5% Similarity=0.046 Sum_probs=28.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhC----cCCChHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 046631 652 HYCCVADMLGRVGKVVEAYEFVKELG----EEGNVLEIWGSLLGSCRLHGHSELAEVVAKKL 709 (813)
Q Consensus 652 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 709 (813)
++..+++.|.+.|++++|.+.+.++. ..+...+++-.++..+...+|+..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44445555555555555555554441 12233344445555555555555555555444
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=71.68 E-value=56 Score=29.25 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=20.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCC
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGM 594 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 594 (813)
+..+-...+.++.+.|..+....+.+.+..++...-...+.++...|.
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 333444444444444443333333333334444444444444444443
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.49 E-value=16 Score=34.28 Aligned_cols=114 Identities=12% Similarity=0.016 Sum_probs=70.1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChh----HHHHHHHHHhcc
Q 046631 588 GYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTE----HYCCVADMLGRV 663 (813)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 663 (813)
.+.+.|+.++|+.....-++.. +-|...-..|+.-+|-.|++++|.+-++...+. .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 4456778888888877777742 445555666777888888888888888777643 66532 33333322
Q ss_pred CCHHHHHHHHHHh------CcCC-ChHHHHH-HHHHHHH--HhCCHHHHHHHHHHHhcCCCCC
Q 046631 664 GKVVEAYEFVKEL------GEEG-NVLEIWG-SLLGSCR--LHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 664 g~~~~A~~~~~~~------~~~~-~~~~~~~-~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
+..-.+. +.-. ... -|. .|+.+.. ..|+.++|...-.++++.-|..
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~-~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENE-ELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ------HHHHHHHHcCCCCCCCCCCCH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1121221 1111 222 343 3444443 4599999999999998887765
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.16 E-value=25 Score=28.74 Aligned_cols=59 Identities=12% Similarity=0.065 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHH
Q 046631 394 EGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLI 452 (813)
Q Consensus 394 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 452 (813)
+..+-++.+...++.|++......+++|.+.+++..|.++++.+...--....+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 55666777777789999999999999999999999999999888766433345555554
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.89 E-value=19 Score=37.14 Aligned_cols=97 Identities=9% Similarity=-0.077 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHH--H
Q 046631 549 FVGTSLIDMYSKSGVINYAANVFAKIPE------KNSVTYTTMILGYGQHGMSERALSLFRSMKG---CGIEPDAIT--F 617 (813)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~--~ 617 (813)
.+...+.+.|.+.|+++.|.+.|.++.. .-+..+-..+..+...+++..+...+++... .+-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3567889999999999999999998762 3466788889999999999999999998754 333343332 1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcC
Q 046631 618 VAVLSACSYAGLVDEGLQIFDLMQQEYK 645 (813)
Q Consensus 618 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 645 (813)
..-...+...+++.+|.+.|-+....+.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 1122234578899999999999887744
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.97 E-value=32 Score=28.15 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046631 494 LEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLID 556 (813)
Q Consensus 494 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 556 (813)
.-+..+-++.+....+.|++......+.+|.+.+++..|.++++-++..-- +...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~-~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-CchhhHHHHHH
Confidence 335566677777788899999999999999999999999999998876631 22445665553
No 273
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=66.83 E-value=59 Score=38.63 Aligned_cols=166 Identities=14% Similarity=0.131 Sum_probs=84.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 046631 553 SLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDE 632 (813)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~ 632 (813)
.++..+.+.|..+-|.++..-... +...--.+..+|...|++++|.+.|++.-. |+..+... ......
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l----------~~~~~~ 884 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQ----------FAVLRE 884 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCS----------CSSHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchh----------hhhhcc
Confidence 445555556666655554443332 333333445556666666666666655321 22111110 000011
Q ss_pred HHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh----CcCCC--hHHHHHHHHHHHHHhCCHHHHHHH
Q 046631 633 GLQIFDLMQQEYKIQP-STEHYCCVADMLGRVGKVVEAYEFVKEL----GEEGN--VLEIWGSLLGSCRLHGHSELAEVV 705 (813)
Q Consensus 633 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 705 (813)
+..+........ -..-|..++..+.+.|.++.+.++.+.. ...+. ....|..+...+...|++++|-..
T Consensus 885 ----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 885 ----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp ----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred ----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 111111111111 1345677777888888888888776543 11221 112677788888888888888777
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHhcCCcHH
Q 046631 706 AKKLLEMDTRNSMPGYHVLLSNIYAEEGNWEN 737 (813)
Q Consensus 706 ~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 737 (813)
+-..-...-. ..+...|...+++.|..++
T Consensus 961 L~~~pd~~~r---~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 961 LMVLSTTPLK---KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHSSSC---HHHHHHHHHHHHHHCCHHH
T ss_pred HHhCCCHHHH---HHHHHHHHHHHHhCCChhh
Confidence 6655433322 3455555555666665443
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.74 E-value=38 Score=28.60 Aligned_cols=49 Identities=6% Similarity=-0.010 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
...+|..+...+.....+..|..-+..+...|++++|.++++.-.+.+-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 6777777776665555577888888888888888888888888776643
No 275
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=66.51 E-value=1.5e+02 Score=32.11 Aligned_cols=385 Identities=9% Similarity=-0.010 Sum_probs=180.8
Q ss_pred CChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhCCCChhHHHHHHHHHH
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTISFVNVFPALSSLGDYKSADVVYGLLV 253 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 253 (813)
+++......+.. +..+...-.....+....|+..+|....+.+-..|- .....+..++..+.+.|.+.
T Consensus 86 ~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt---------- 153 (618)
T 1qsa_A 86 EDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQD---------- 153 (618)
T ss_dssp TCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSC----------
T ss_pred CCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCC----------
Confidence 888888887776 333443334456667778888888887777766552 33445555665555444332
Q ss_pred HhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhhH
Q 046631 254 KLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVTF 333 (813)
Q Consensus 254 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t~ 333 (813)
....-.-+......|+...|..+...+..........++..+. ++..+.... .. +.++...-
T Consensus 154 ---------~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~-~~-----~~~~~~~~ 215 (618)
T 1qsa_A 154 ---------PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFA-RT-----TGATDFTR 215 (618)
T ss_dssp ---------HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHH-HH-----SCCCHHHH
T ss_pred ---------HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHH-hc-----cCCChhhH
Confidence 2112222344555666777777766653211111122222111 222222222 10 01111110
Q ss_pred HHHHHHhcccCcchHHHHHHHHHHHhcccchhhhhccCCCCCcchHHHHHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhH
Q 046631 334 LSALSAVSQLQELDLGQQLHAYIIKNFVALPVIVLNAVIERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFMIDSVT 413 (813)
Q Consensus 334 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 413 (813)
. .+...+.-+.+ .+.+.|..++....... ..+...
T Consensus 216 ~-------------------------------------------~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~ 250 (618)
T 1qsa_A 216 Q-------------------------------------------MAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQ 250 (618)
T ss_dssp H-------------------------------------------HHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHH
T ss_pred H-------------------------------------------HHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHH
Confidence 0 01111222222 25667777776665433 122222
Q ss_pred HHHH----HHHHhcCCChHHHHHHHHHHHHhCCCCcchHHHHHHHHHhcCCHHHHHHHHhhcCCCCCChhh-HHHHHHHH
Q 046631 414 VTAL----LSAASNLRNQDVGKQTHAYLLRHGIHFEGMESYLIDMYAKSGLIKTARQIFEKNDSGDRDQAT-WNAMIAGY 488 (813)
Q Consensus 414 ~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~li~~~ 488 (813)
...+ .......+....+...+....... ..+.+....+....+.|+++.|...|+.+....++..- .--+..++
T Consensus 251 ~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~ 329 (618)
T 1qsa_A 251 IQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLL 329 (618)
T ss_dssp HHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHhccccC-CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHH
Confidence 2222 222223342334444444433222 22233334445556779999999999998753322222 23344567
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCc-h-----hHHHHHHHHHHhcC
Q 046631 489 TQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQN-V-----FVGTSLIDMYSKSG 562 (813)
Q Consensus 489 ~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-----~~~~~li~~~~~~g 562 (813)
...|+.++|..+|..+... .+ |-.++.+ .+.|..... . .....+. . ...-..+..+...|
T Consensus 330 ~~~g~~~~a~~~~~~~a~~---~~---fYg~lAa-~~Lg~~~~~-~------~~~~~~~~~~~~~~~~~~~r~~~L~~~g 395 (618)
T 1qsa_A 330 LERGREAEAKEILHQLMQQ---RG---FYPMVAA-QRIGEEYEL-K------IDKAPQNVDSALTQGPEMARVRELMYWN 395 (618)
T ss_dssp HHTTCHHHHHHHHHHHHTS---CS---HHHHHHH-HHTTCCCCC-C------CCCCCSCCCCHHHHSHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHhcC---CC---hHHHHHH-HHcCCCCCC-C------CCCCChhHHhhhccChHHHHHHHHHHCC
Confidence 7889999999999988642 22 2222221 111110000 0 0000000 0 01112344567788
Q ss_pred CHHHHHHHHhhCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046631 563 VINYAANVFAKIPE-KNSVTYTTMILGYGQHGMSERALSLFRSMKGCGI----EPDAITFVAVLSACSYAGLVDEGLQIF 637 (813)
Q Consensus 563 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~ll~a~~~~g~~~~a~~~~ 637 (813)
....|...+..+.+ .+......+.......|.++.++....+....+. -|. .|..++....+.-.++..+-.-
T Consensus 396 ~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~--~y~~~i~~~a~~~gv~~~ll~A 473 (618)
T 1qsa_A 396 LDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPL--AYNDLFKRYTSGKEIPQSYAMA 473 (618)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCC--TTHHHHHHHHTTSSSCHHHHHH
T ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCc--chHHHHHHHHHHcCCCHHHHHH
Confidence 88888877766542 3433344444555667777777665544322110 011 2445555555444444433321
Q ss_pred HHHHHhcCCCCChh
Q 046631 638 DLMQQEYKIQPSTE 651 (813)
Q Consensus 638 ~~~~~~~~~~p~~~ 651 (813)
--..+. ++.|+..
T Consensus 474 i~~~ES-~f~p~a~ 486 (618)
T 1qsa_A 474 IARQES-AWNPKVK 486 (618)
T ss_dssp HHHHHH-TTCTTCB
T ss_pred HHHHhC-CCCCCCc
Confidence 122333 6667643
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.22 E-value=58 Score=28.97 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC
Q 046631 594 MSERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP 648 (813)
Q Consensus 594 ~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 648 (813)
...++.++|..|...|+.-... .|......+...|++.+|.++|+.-++. +-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 3456666666666665554433 4555555555666666666666665555 4444
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=61.63 E-value=49 Score=28.36 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCCC
Q 046631 702 AEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERGL 750 (813)
Q Consensus 702 a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 750 (813)
...+|..+...+.....+.+|...+..+...|++.+|.++++.-.+.+-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 5566777666555544477788888888888888888888887776653
No 278
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=61.57 E-value=8.7 Score=29.71 Aligned_cols=30 Identities=17% Similarity=0.063 Sum_probs=25.1
Q ss_pred HH-HHHHHHHHHHHHHHcC-----CccCCCCCCCCC
Q 046631 779 HK-IYEMLERLAMEMRNAG-----NKTIQNSNVDAT 808 (813)
Q Consensus 779 ~~-~~~~l~~l~~~~~~~~-----~~~~c~~c~~~~ 808 (813)
.+ +|+.|+-+.+.++..| +-+.|.+||+..
T Consensus 42 ke~Vy~hLeHIaksl~r~g~~L~v~p~~C~~CG~~F 77 (105)
T 2gmg_A 42 KKVILEDLKVISKIAKREGMVLLIKPAQCRKCGFVF 77 (105)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEECCCBBTTTCCBC
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECcChhhCcCee
Confidence 44 8999999888887765 678999999986
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=61.41 E-value=85 Score=31.08 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHH
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIPEKN---SVTYTTMILGYGQHGM--SERALSLFRSMKGCGIEPDAI 615 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 615 (813)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+....++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 5677888899999999999999998663 3344444555544333 345777777777776554443
No 280
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=56.76 E-value=1e+02 Score=27.11 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCC
Q 046631 547 NVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGM 594 (813)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 594 (813)
+..+-...+.++.+.|..+....+.+.+..++...-...+.++...++
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 333444444444444443333333333334444444444444444443
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.44 E-value=1.1e+02 Score=25.90 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC
Q 046631 596 ERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP 648 (813)
Q Consensus 596 ~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 648 (813)
+++.++|..|...|+.-... .|......+...|++.+|.++|+.-++. +-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 33677777777777655543 4555666666777777777777766665 5555
No 282
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=48.99 E-value=78 Score=27.86 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCcCCChHH------HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 666 VVEAYEFVKELGEEGNVLE------IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 666 ~~~A~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
++-|+.+++.+...-+... +--.....|.+.|.+++|.+++++.....+.+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~ 150 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSH 150 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----C
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCc
Confidence 4566666666644433210 22345678888999999999999988777665
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=47.35 E-value=1e+02 Score=28.86 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHHHHhCCCCc---chHHHHHHHHHhcCCHHHHHHHHh
Q 046631 425 RNQDVGKQTHAYLLRHGIHFE---GMESYLIDMYAKSGLIKTARQIFE 469 (813)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~ 469 (813)
++......+.+.+.+.|..++ .-..+.+...++.|+.+-+..+++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 333333444445555554433 112234445556677766666665
No 284
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.61 E-value=44 Score=31.56 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=11.9
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHCCCCC
Q 046631 381 TMISAFVQNGLDDEGLMLVYEMQKQGFMI 409 (813)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p 409 (813)
..+...++.|+.+. ++.+.+.|..+
T Consensus 7 ~~L~~A~~~g~~~~----v~~Ll~~g~~~ 31 (285)
T 1wdy_A 7 HLLIKAVQNEDVDL----VQQLLEGGANV 31 (285)
T ss_dssp HHHHHHHHTTCHHH----HHHHHHTTCCT
T ss_pred hHHHHHHHcCCHHH----HHHHHHcCCCc
Confidence 34445566666543 33344445433
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.58 E-value=1.4e+02 Score=25.57 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC
Q 046631 597 RALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS 649 (813)
Q Consensus 597 ~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 649 (813)
.+.++|..|...|+.-... .|......+...|++.+|.++|..-++. +-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 3666777777777655543 4555566666777777777777776665 55553
No 286
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=44.35 E-value=4.1e+02 Score=30.34 Aligned_cols=222 Identities=11% Similarity=0.010 Sum_probs=99.9
Q ss_pred HHHhcCCHHHHHHHHhhcCCC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-------CCCHHHHHHHHH-
Q 046631 454 MYAKSGLIKTARQIFEKNDSG----DRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNV-------TPNVVTIASVLP- 521 (813)
Q Consensus 454 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-------~p~~~t~~~ll~- 521 (813)
+....|+.+++..+++..... .+.+..-..+.-+....|..++++.++.......- .+....-.++--
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345566777777777664421 11122223334455556655667766666554211 010111111111
Q ss_pred -HhccCCChHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC--HhHHHHHHHHHHhcCCh
Q 046631 522 -ACNPMGNIELGKQLHGFSIRYLLDQNV--FVGTSLIDMYSKSGVINYAANVFAKIP-EKN--SVTYTTMILGYGQHGMS 595 (813)
Q Consensus 522 -~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~--~~~~~~li~~~~~~g~~ 595 (813)
++...++- ++...+..+....- ... ..--+|.-.|.-.|+-+....++..+. ..+ +.-.-.+.-++...|+.
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 22223333 33333333332211 011 111123333445566655555555433 112 22222333344466777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHH---HHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCHHHHHHH
Q 046631 596 ERALSLFRSMKGCGIEPDAITFV---AVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRVGKVVEAYEF 672 (813)
Q Consensus 596 ~~A~~~~~~m~~~g~~p~~~~~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 672 (813)
+.+..+++.+... .....-|. .+.-+|+..|+.....+++..+.+. ...+++....+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7777777777652 11122232 2233566777766666677666643 122344444444444445555555666
Q ss_pred HHHhCcCCC
Q 046631 673 VKELGEEGN 681 (813)
Q Consensus 673 ~~~~~~~~~ 681 (813)
++.+....+
T Consensus 617 v~~L~~~~d 625 (963)
T 4ady_A 617 VQLLSKSHN 625 (963)
T ss_dssp TTTGGGCSC
T ss_pred HHHHHhcCC
Confidence 655544343
No 287
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=43.24 E-value=1.7e+02 Score=25.63 Aligned_cols=145 Identities=14% Similarity=0.086 Sum_probs=73.9
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHH
Q 046631 452 IDMYAKSGLIKTARQIFEKNDSGDRDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIEL 531 (813)
Q Consensus 452 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 531 (813)
+..+.+.+..+....+.+.+. +++...-...+.++...+.. ++...+.++.. .++...-...+.++...++.+.
T Consensus 35 ~~~L~~~~~~~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~ 108 (201)
T 3ltj_A 35 AYALGKIGDERAVEPLIKALK--DEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDERA 108 (201)
T ss_dssp HHHHHHHCCGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHhcCChhHHHHHHHHHc--CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHH
Confidence 333344444333333333343 44444444444555555543 33333444333 3455555555555555555433
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046631 532 GKQLHGFSIRYLLDQNVFVGTSLIDMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 532 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
...+...+ -.++..+-...+.++.+.|..+....+...+..++...-...+.++...|. .++...+.++.+
T Consensus 109 ~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 109 VEPLIKAL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHT----TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHH----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 33332222 245666666777777777765544444445556676666666777766665 445555555554
No 288
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=42.02 E-value=1.8e+02 Score=25.66 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=61.1
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046631 476 RDQATWNAMIAGYTQNGLLEEAFVAFRQMLEHNVTPNVVTIASVLPACNPMGNIELGKQLHGFSIRYLLDQNVFVGTSLI 555 (813)
Q Consensus 476 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 555 (813)
++...-...+.++.+.+.. ++...+.++.. .++...-...+.++...++.+....+.. +. -.++..+-...+
T Consensus 62 ~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~ 133 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDERAVEPLIK-AL---KDEDWFVRIAAA 133 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HT---TCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHHH-HH---hCCCHHHHHHHH
Confidence 3444333444444444432 23333333332 2444444444555555444332222222 22 235566666667
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046631 556 DMYSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKG 607 (813)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (813)
.++.+.|..+....+.+-+..++...-...+.++...+. .++...+.++.+
T Consensus 134 ~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 134 FALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 777777765444444444556676666666777776665 455555555554
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.32 E-value=96 Score=28.10 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 700 ELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 700 ~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
+....+|..+...+.....+.+|...+..+...|++++|.++|+.-.+.+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 35556777777665555447788888888888888888888888777654
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.71 E-value=1.2e+02 Score=24.68 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCC
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIPEKN---SVTYTTMILGYGQHGM--SERALSLFRSMKGCGIEPD 613 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 613 (813)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+....++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567778888899999999998887652 2334444445444432 3556677777776664443
No 291
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.27 E-value=1.9e+02 Score=30.22 Aligned_cols=67 Identities=12% Similarity=-0.002 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhCcCC---Ch---HHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q 046631 650 TEHYCCVADMLGRVGKVVEAYEFVKELGEEG---NV---LEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRN 716 (813)
Q Consensus 650 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 716 (813)
...++.++..|...+.++.|..++.+..... .. ...+..++..+..++++.+|.+.+..++..-|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 4556666666667777777777776663211 11 1123344555556667777776666666665544
No 292
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.38 E-value=2.5e+02 Score=25.24 Aligned_cols=24 Identities=8% Similarity=-0.092 Sum_probs=13.8
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcC
Q 046631 77 IIGFVCNNLPYEAILLYSQMKKSS 100 (813)
Q Consensus 77 i~~~~~~~~~~~a~~~~~~m~~~~ 100 (813)
+...++.|+.+-...+++.+.+.+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344455667666666666555544
No 293
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=35.16 E-value=1.7e+02 Score=26.16 Aligned_cols=54 Identities=7% Similarity=0.176 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcCCCCC-hh-----HHHHHHHHHhccCCHHHHHHHHHHhCcCCChH
Q 046631 630 VDEGLQIFDLMQQEYKIQPS-TE-----HYCCVADMLGRVGKVVEAYEFVKELGEEGNVL 683 (813)
Q Consensus 630 ~~~a~~~~~~~~~~~~~~p~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 683 (813)
++.|+.+|+.+.+...+..+ .. .-...+-.|.+.|.+++|.+++++.-.+.+..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~ 147 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTT 147 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGG
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCc
Confidence 45566666666655222111 11 11234556778888888888888875554443
No 294
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=34.96 E-value=2.5e+02 Score=25.19 Aligned_cols=28 Identities=25% Similarity=0.133 Sum_probs=15.4
Q ss_pred HHHHHHCCCcHHHHHHHHHHHHCCCCCC
Q 046631 383 ISAFVQNGLDDEGLMLVYEMQKQGFMID 410 (813)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~~g~~pd 410 (813)
+...++.|+.+-+..+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3444556666666666665555554433
No 295
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=34.01 E-value=4.9e+02 Score=28.28 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=24.0
Q ss_pred HHHHHHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 046631 382 MISAFVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAAS 422 (813)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 422 (813)
....+.-.|+++.|++++-.. ...|.+++...+..+.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~g 336 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLK 336 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcC
Confidence 455556688888888877654 3556666666555543
No 296
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=33.66 E-value=2.3e+02 Score=24.36 Aligned_cols=175 Identities=14% Similarity=0.068 Sum_probs=86.4
Q ss_pred HHhcCCHHHHHHHHhhCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--C--------------CH-HHHHHH
Q 046631 558 YSKSGVINYAANVFAKIPEKNSVTYTTMILGYGQHGMSERALSLFRSMKGCGIE--P--------------DA-ITFVAV 620 (813)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--------------~~-~~~~~l 620 (813)
+.-.|.+.+++-++...-.-...-|.. -+|-+.+++..|+..++.+++..+. | |. ..++.+
T Consensus 43 LyyngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~ 120 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLL 120 (242)
T ss_dssp HHHTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHH
T ss_pred hhhcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHH
Confidence 344677777777766543222222332 3566788899999999888854443 1 22 245555
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH-h-ccCCHHHHHHHHHHhCcCCChHH-HHHHHHHHHHHhC
Q 046631 621 LSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADML-G-RVGKVVEAYEFVKELGEEGNVLE-IWGSLLGSCRLHG 697 (813)
Q Consensus 621 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~-~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g 697 (813)
...|.+.|+.++|+..+..-- |+.|-..+...|+.-- . ..-+.+. +...- ..+... .++..........
T Consensus 121 a~lltq~g~r~EaI~y~~~Sf---~~~~lf~~vEnliyeN~vp~~~d~~~---i~~~~--~~~i~~~y~~d~~~lHe~~s 192 (242)
T 3kae_A 121 GDLCTLSGYREEGIGHYVRSF---GKSFLFSPVENLLLENKVPQKRDKEN---VRQTG--RRGIEEEYVSDSIEFHESLS 192 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH---HHCCCHHHHHHHHHTTCCCCCC----------------CHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCHHHhhhHhhhhc---CCccccchHHHHHhhcCCCcccchHH---HHhhh--hccchhhhhhhHHHHHHhcc
Confidence 567778888888888775443 4444333322222110 0 0000000 00000 000000 1111111000000
Q ss_pred CHHHHHHHHHHHhcCCCCCCCchhHHH-HHHHHHhcCCcHHHHHHHHHHHHCC
Q 046631 698 HSELAEVVAKKLLEMDTRNSMPGYHVL-LSNIYAEEGNWENVDKVRKEMRERG 749 (813)
Q Consensus 698 ~~~~a~~~~~~~~~~~p~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~ 749 (813)
-...++..+--|.- .++++. -+.-|...|-.++....|..++++.
T Consensus 193 -----~~~ikkY~n~iPGi--GSY~va~aa~~yf~lg~~d~s~~lf~~lR~kD 238 (242)
T 3kae_A 193 -----PSLVKKYMEHVPGI--GSYFISNAARRYFNLGMNDKSKACFELVRRKD 238 (242)
T ss_dssp -----HHHHHHHHTSTTTH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -----HHHHHHHHHhCCCc--hhHHHHHHHHHHHhcccchhHHHHHHHHHhcC
Confidence 03344444555653 333332 3556888999999999999988654
No 297
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.66 E-value=1.8e+02 Score=26.29 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC
Q 046631 596 ERALSLFRSMKGCGIEPDAI-TFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQP 648 (813)
Q Consensus 596 ~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 648 (813)
+.+.++|..|...|+.-... .|......+...|++.+|..+|+.-++. +-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 45666777777766655443 4555555666667777777777666665 5555
No 298
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=33.13 E-value=97 Score=28.71 Aligned_cols=56 Identities=11% Similarity=-0.084 Sum_probs=32.8
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCCCCcc-------cHHHHHHHhh--ccCCchHHHHHHHHHH
Q 046631 77 IIGFVCNNLPYEAILLYSQMKKSSPYTSCDNY-------TYSSVLKACA--ETRNLRIGKAVHCHFI 134 (813)
Q Consensus 77 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~ 134 (813)
+...++.|+.+....+++.+.+.+ ..++.. -.+.|..|.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~--~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHK--KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHT--CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC--CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 344566777777777777666666 444422 3344444442 5677777766666543
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.02 E-value=1.1e+02 Score=25.84 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCC
Q 046631 551 GTSLIDMYSKSGVINYAANVFAKIPEKN---SVTYTTMILGYGQHGM--SERALSLFRSMKGCGIEP 612 (813)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 612 (813)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567788888899999999998887652 2334444444444322 345666777776665443
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.45 E-value=1.5e+02 Score=25.75 Aligned_cols=80 Identities=10% Similarity=0.041 Sum_probs=37.3
Q ss_pred HHHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc---chHHHHHHHHHhcCCHH
Q 046631 386 FVQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRNQDVGKQTHAYLLRHGIHFE---GMESYLIDMYAKSGLIK 462 (813)
Q Consensus 386 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 462 (813)
.+..|+.+....++..-...--..|..-.+.+ ...+..|+.+ +.+.+++.|..++ ....+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPL-NIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 35567766655555421100001122222233 3333445544 4444455555544 22233445556677777
Q ss_pred HHHHHHhh
Q 046631 463 TARQIFEK 470 (813)
Q Consensus 463 ~A~~~~~~ 470 (813)
-+..+++.
T Consensus 87 ~~~~Ll~~ 94 (201)
T 3hra_A 87 ILAYMLKH 94 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777754
No 301
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=28.34 E-value=4.1e+02 Score=25.63 Aligned_cols=127 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc---CC
Q 046631 589 YGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRV---GK 665 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~ 665 (813)
+...|++++|+..|+..+ +...+.......+.+++.+++....+- ....-++.-.+. .+
T Consensus 124 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icrEY--------ilal~iEl~Rr~l~~~~ 185 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI----------YRITLLMVDDAEDEKLAHKILETAREY--------ILGLSIELERRSLKEGN 185 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHHHTCCBCSSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTCCTTC
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeeccHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCccc
Q ss_pred HHHHHHHHHHhCcCCChHH----HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCCcHHHHHH
Q 046631 666 VVEAYEFVKELGEEGNVLE----IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGNWENVDKV 741 (813)
Q Consensus 666 ~~~A~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 741 (813)
.....++---+..-+-.+. ++..-+..+.+++++.-|..+.++++++.|.. ... ++|.++
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--~~a--------------~qArki 249 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--PRA--------------EQARKI 249 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--HHH--------------HHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--HHH--------------HHHHHH
Q ss_pred HHHHHHCC
Q 046631 742 RKEMRERG 749 (813)
Q Consensus 742 ~~~m~~~~ 749 (813)
+....+.+
T Consensus 250 l~~ce~~~ 257 (325)
T 3mv2_A 250 KNKADSMA 257 (325)
T ss_dssp HHHHHTSC
T ss_pred HHHHhcCC
No 302
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.86 E-value=3.2e+02 Score=24.19 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=43.2
Q ss_pred HHHHHHHH---HHCCCcHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCC-----hHHHHHHHHHHHHhCCCCc
Q 046631 379 WNTMISAF---VQNGLDDEGLMLVYEMQKQGFMIDSVTVTALLSAASNLRN-----QDVGKQTHAYLLRHGIHFE 445 (813)
Q Consensus 379 ~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~ 445 (813)
.--+|+++ .+..+++.|+-.+-+|++.| .|....-..++.+.-..|. +..+...++.....|.+.-
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 87 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEA 87 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 33456666 45689999999999999999 7766665666666655553 2344455555555565443
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.63 E-value=1.7e+02 Score=26.81 Aligned_cols=21 Identities=14% Similarity=-0.059 Sum_probs=12.7
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 046631 485 IAGYTQNGLLEEAFVAFRQML 505 (813)
Q Consensus 485 i~~~~~~~~~~~A~~~~~~m~ 505 (813)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455566666666666666544
No 304
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.15 E-value=2.5e+02 Score=25.00 Aligned_cols=15 Identities=7% Similarity=-0.259 Sum_probs=6.6
Q ss_pred HhcCCChhHHHHHHH
Q 046631 80 FVCNNLPYEAILLYS 94 (813)
Q Consensus 80 ~~~~~~~~~a~~~~~ 94 (813)
.++.|+.+....+++
T Consensus 13 A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 13 LAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 344444444444443
No 305
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=26.74 E-value=36 Score=23.75 Aligned_cols=21 Identities=10% Similarity=0.096 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCCccccccc
Q 046631 10 LPPPPPTATPPPPQLPQIHSL 30 (813)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (813)
||||+|.|......++.+...
T Consensus 5 pp~~a~~pa~~~~~geDVL~r 25 (69)
T 2xk0_A 5 PPVAAPSPAVTYALQEDVFIK 25 (69)
T ss_dssp CSSSSSCCCCCCCTTCEEEEE
T ss_pred CCCCCCCcccccccCCeEEEE
Confidence 333444445666666666543
No 306
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=26.20 E-value=2.4e+02 Score=25.18 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=11.7
Q ss_pred HHHHhhcCCcchHHHhhhcC
Q 046631 46 LSKICQEGRPHLARQLFDSI 65 (813)
Q Consensus 46 l~~~~~~g~~~~A~~~~~~~ 65 (813)
+......|+++....+++.-
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g 32 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAG 32 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHcCChHHHHHHHHcC
Confidence 44444447777777776643
No 307
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.78 E-value=2.7e+02 Score=22.58 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCC---ChhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCC
Q 046631 449 SYLIDMYAKSGLIKTARQIFEKNDSGDR---DQATWNAMIAGYTQNGL--LEEAFVAFRQMLEHNVTPN 512 (813)
Q Consensus 449 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~ 512 (813)
..++.-|...|+.++|...++++. .| .......+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~--~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE--VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT--CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC--CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 457788888999999999999887 44 22344455555555432 3567777877777665443
No 308
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.47 E-value=1.1e+02 Score=27.23 Aligned_cols=67 Identities=19% Similarity=0.149 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCcCCCh----HH-----HHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcCC
Q 046631 666 VVEAYEFVKELGEEGNV----LE-----IWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNSMPGYHVLLSNIYAEEGN 734 (813)
Q Consensus 666 ~~~A~~~~~~~~~~~~~----~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 734 (813)
++-|+.+++.+...-.. .+ +--.....|.+.|.+++|.+++++.+...+.+ ...-.-|..+-.+..-
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~--~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTT--QKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGG--HHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCc--hHHHHHHHHHHhccCc
Confidence 45566666666332211 00 22345678999999999999999999876554 2233334444444433
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.32 E-value=68 Score=24.58 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=29.9
Q ss_pred CChhHHHHHHcccCCCCcccHHHHHHHHHcCCChhHH
Q 046631 174 SKYDLVCKVFDTMRRRNVVAWNTIVSWYVKTERYVEA 210 (813)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 210 (813)
...+.|+++++.++.++..+|..++.++...|...-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4678899999999998889999999998776665444
No 310
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=25.06 E-value=1.7e+02 Score=26.82 Aligned_cols=86 Identities=8% Similarity=-0.001 Sum_probs=43.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 046631 586 ILGYGQHGMSERALSLFRSMKGC--GIEP----DAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADM 659 (813)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 659 (813)
+..+..+.++++|++++++..+. ++++ ........+..-.....-.-+..+.+++. . .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~---~-~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL---S-SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH---T-CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---h-cCCHHHHHHHHHH
Confidence 55666677777777777655431 1221 11111222222222222222333333332 1 3456666677788
Q ss_pred HhccCCHHHHHHHHHH
Q 046631 660 LGRVGKVVEAYEFVKE 675 (813)
Q Consensus 660 ~~~~g~~~~A~~~~~~ 675 (813)
+.+.|+-++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 8888888888887654
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.19 E-value=2.3e+02 Score=23.85 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCC---ChhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCC
Q 046631 449 SYLIDMYAKSGLIKTARQIFEKNDSGDR---DQATWNAMIAGYTQNGL--LEEAFVAFRQMLEHNVTPN 512 (813)
Q Consensus 449 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~ 512 (813)
..++.-|...|+.++|...++++. .| ..+....+..++-+.++ .+.+..++..+...++-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~--~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE--VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT--CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC--CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 557888888899999999999887 44 23344455555555332 3456677777776665443
No 312
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.95 E-value=4.5e+02 Score=24.56 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=9.9
Q ss_pred HHHHHHHHCCCCCCHhH
Q 046631 397 MLVYEMQKQGFMIDSVT 413 (813)
Q Consensus 397 ~~~~~m~~~g~~pd~~t 413 (813)
++++.+.+.|..++...
T Consensus 209 ~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 209 EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 44555566676666554
No 313
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.04 E-value=1.7e+02 Score=26.36 Aligned_cols=13 Identities=8% Similarity=0.199 Sum_probs=7.6
Q ss_pred CChhHHHHHHccc
Q 046631 174 SKYDLVCKVFDTM 186 (813)
Q Consensus 174 g~~~~a~~~~~~~ 186 (813)
|+.+-+..+++.-
T Consensus 87 ~~~~~v~~Ll~~g 99 (240)
T 3eu9_A 87 GHLSMVVQLMKYG 99 (240)
T ss_dssp TCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcC
Confidence 6666666666543
No 314
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.99 E-value=1.6e+02 Score=30.82 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC-----CchhHHHHHHHHHhcCCcHHHHHHHHHHHHC
Q 046631 684 EIWGSLLGSCRLHGHSELAEVVAKKLLEMDTRNS-----MPGYHVLLSNIYAEEGNWENVDKVRKEMRER 748 (813)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 748 (813)
.+++.++..|...+.++.|..+..+.. .|... ...++..+|.++.-+++|.+|.+.+.....+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 389999999999999999999999885 34321 1456777899999999999999999887754
No 315
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.57 E-value=1.3e+02 Score=30.60 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhh
Q 046631 450 YLIDMYAKSGLIKTARQIFEK 470 (813)
Q Consensus 450 ~l~~~~~~~g~~~~A~~~~~~ 470 (813)
+.+...++.|+.+-+..+++.
T Consensus 82 t~L~~A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 82 TPLHCAARIGHTNMVKLLLEN 102 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHhC
Confidence 344455566666666666654
No 316
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.35 E-value=3e+02 Score=24.64 Aligned_cols=205 Identities=11% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCCCcccHHHHHHHhhccCCchHHHHHHHHHHHhCCCCChhHhhHHHHHhhcCCCchhhhhhhhccc
Q 046631 90 ILLYSQMKKSSPYTSCDNYTYSSVLKACAETRNLRIGKAVHCHFIRCFSNPSRFVYNSLLNMYSTCLSSLDAEMVGLKYV 169 (813)
Q Consensus 90 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 169 (813)
.++++.+.+.|..+......-...+...+..|+.+....+++. ...+........+.+...+..
T Consensus 24 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~-------------- 87 (237)
T 3b7b_A 24 VDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKDAEGSTCLHLAAKK-------------- 87 (237)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCCTTSCCHHHHHHHT--------------
T ss_pred HHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCcHHHHHHHc--------------
Q ss_pred ccCCCChhHHHHHHcccC----CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHhhCCCChh
Q 046631 170 EVDYSKYDLVCKVFDTMR----RRNVVAWNTIVSWYVKTERYVEAVRQFRMMLRMGIRPSTI--SFVNVFPALSSLGDYK 243 (813)
Q Consensus 170 ~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~ 243 (813)
|+.+-+..+++.-+ .++..-++.+..+..... .++++.+.+.|..++.. .-.+.+...+..|+.+
T Consensus 88 ----~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 158 (237)
T 3b7b_A 88 ----GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH-----VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD 158 (237)
T ss_dssp ----TCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH
T ss_pred ----CCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHhhcCCCCcc--hHHHHHHHHHhCCCchHHHHHHHHHH
Q 046631 244 SADVVYGLLVKLGSEYVNDLFVASSAIFMYAELGCFDFARKIFDNCLERNTE--VWNTMIGGYVQNNHPVEAIELFVQVL 321 (813)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~m 321 (813)
+.+.+.+.|..+..........+...++.|+.+-+..+++.....+.. .-.+-+...+..|+...++++. +.+
T Consensus 159 ----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~-~~l 233 (237)
T 3b7b_A 159 ----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS-KAL 233 (237)
T ss_dssp ----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH-HHH
T ss_pred ----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH-HHh
Q ss_pred HhC
Q 046631 322 ELD 324 (813)
Q Consensus 322 ~~~ 324 (813)
.+.
T Consensus 234 ~ds 236 (237)
T 3b7b_A 234 QDS 236 (237)
T ss_dssp HHC
T ss_pred hcc
No 317
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.33 E-value=2.6e+02 Score=28.34 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=10.6
Q ss_pred HHHHHhcCCHHHHHHHHhh
Q 046631 452 IDMYAKSGLIKTARQIFEK 470 (813)
Q Consensus 452 ~~~~~~~g~~~~A~~~~~~ 470 (813)
+...+..|+.+-+..+++.
T Consensus 51 L~~A~~~g~~~~v~~Ll~~ 69 (437)
T 1n11_A 51 LHMAARAGHTEVAKYLLQN 69 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3444555666666666654
No 318
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=21.78 E-value=6.2e+02 Score=25.39 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHH
Q 046631 721 YHVLLSNIYAEEGNWENVDKVRKEM 745 (813)
Q Consensus 721 ~~~~l~~~~~~~g~~~~A~~~~~~m 745 (813)
.+...+++++.+|+.+.|.++++.+
T Consensus 338 ~~~eYA~lLA~qG~l~~A~~yL~~l 362 (399)
T 2pm7_A 338 KFLEFINLTTSTGNFELATEFLNSL 362 (399)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4556788999999999999999754
No 319
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.71 E-value=3.3e+02 Score=26.57 Aligned_cols=80 Identities=11% Similarity=-0.068 Sum_probs=37.9
Q ss_pred HHHHHhcCChHHHHHHHhhcCC--------CCcchHHHHHHHHHhCCCchHHHHHHHHHHHhCCCCCChhh--HHHHHHH
Q 046631 270 IFMYAELGCFDFARKIFDNCLE--------RNTEVWNTMIGGYVQNNHPVEAIELFVQVLELDEIVFDDVT--FLSALSA 339 (813)
Q Consensus 270 i~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~g~~p~~~t--~~~ll~~ 339 (813)
+...+..|+.+-+..+++.... .|..-++.|. ..+..|+.+-+ +.+...|..++... -.+.+..
T Consensus 177 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v-----~~Ll~~gad~~~~d~~g~tpL~~ 250 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWEDVA-----MRFVEMGIDVNMEDNEHTVPLYL 250 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHHH-----HHHHTTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHHHH-----HHHHHcCCCCCCCCCCCCCHHHH
Confidence 3444566777777777765433 2222233333 23455554433 33334565554332 1233444
Q ss_pred hcccCcchHHHHHHHH
Q 046631 340 VSQLQELDLGQQLHAY 355 (813)
Q Consensus 340 ~~~~~~~~~a~~~~~~ 355 (813)
.+..|+.+.++.+++.
T Consensus 251 A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 251 SVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTCCHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHc
Confidence 4555666555555443
No 320
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.71 E-value=3.7e+02 Score=23.87 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=29.0
Q ss_pred HHHHHHHHCCCCCCHhh--HHHHHHHhhCCCChhHHHHHHHHHHHhCCC
Q 046631 212 RQFRMMLRMGIRPSTIS--FVNVFPALSSLGDYKSADVVYGLLVKLGSE 258 (813)
Q Consensus 212 ~l~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 258 (813)
++++.+.+.|..++... -.+.+...+..|+.+.+..+++.+.+.|..
T Consensus 135 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 135 EIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 44555556676655331 223445556677888777788888887754
No 321
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=21.48 E-value=3.3e+02 Score=22.74 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=21.4
Q ss_pred HHHHhhcCCcchHHHhhhcCCCC---CcchHHHHHHHHhcCCChhHH
Q 046631 46 LSKICQEGRPHLARQLFDSITRP---TTVIWNTIIIGFVCNNLPYEA 89 (813)
Q Consensus 46 l~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a 89 (813)
+......|+.+....+++.-... +..-+ +.+...+..|+.+-+
T Consensus 18 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v 63 (169)
T 2y1l_E 18 LLEAARAGRDDEVRILMANGADVNAEDASGW-TPLHLAAFNGHLEIV 63 (169)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHcCCHHHH
Confidence 33344448888877777753322 22222 233444555665433
No 322
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.16 E-value=3.5e+02 Score=28.22 Aligned_cols=76 Identities=12% Similarity=0.038 Sum_probs=53.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHH-h-CcCCChHHHHHHHHHHH
Q 046631 617 FVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPS-TEHYCCVADMLGRVGKVVEAYEFVKE-L-GEEGNVLEIWGSLLGSC 693 (813)
Q Consensus 617 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~-~~~~~~~~~~~~l~~~~ 693 (813)
+..|.+.......++.|..+|..+... .|+ -..|+.|+-+....|+.-+|.-.|-+ + ...|... ++.+|...+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~---~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~-a~~nL~~~f 230 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA-ASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH-HHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHh---CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChh-HHHHHHHHH
Confidence 334444455566788999999998854 786 78899999999888887777766554 4 3445554 788877776
Q ss_pred HHh
Q 046631 694 RLH 696 (813)
Q Consensus 694 ~~~ 696 (813)
.+.
T Consensus 231 ~~~ 233 (497)
T 1ya0_A 231 SKA 233 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 323
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=20.59 E-value=2.5e+02 Score=27.05 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc-----
Q 046631 589 YGQHGMSERALSLFRSMKGCGIEPDAITFVAVLSACSYAGLVDEGLQIFDLMQQEYKIQPSTEHYCCVADMLGRV----- 663 (813)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 663 (813)
+...|++++|+..|+..+ +...+.......+.+++.+++....+- ....-++.-.+.
T Consensus 112 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icreY--------ilal~iEl~Rr~l~~~~ 173 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSIL----------LSVPLLVVDNKQEIAEAQQLITICREY--------IVGLSMETERKKLPKET 173 (320)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHGGGCCCCSHHHHHHHHHHHHHHHHH--------HHHHHHHHHHTTSCCCS
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhhheeeccHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcccCC
Q ss_pred -CCHHHHHHH---HHHhCcCC-ChHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q 046631 664 -GKVVEAYEF---VKELGEEG-NVLEIWGSLLGSCRLHGHSELAEVVAKKLLEMDTR 715 (813)
Q Consensus 664 -g~~~~A~~~---~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 715 (813)
.+.....++ |.....+| ....++..-+..+.+++++.-|..+.++++++.|.
T Consensus 174 ~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 174 LEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred chhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
No 324
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=20.05 E-value=3.3e+02 Score=25.52 Aligned_cols=14 Identities=21% Similarity=0.045 Sum_probs=7.6
Q ss_pred HHHHhCCCCCChhh
Q 046631 319 QVLELDEIVFDDVT 332 (813)
Q Consensus 319 ~~m~~~g~~p~~~t 332 (813)
+.+...|..++...
T Consensus 212 ~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 212 QALFKYDINIYSAN 225 (285)
T ss_dssp HHHTTSCBCSTTTT
T ss_pred HHHHHcCCCCCCCC
Confidence 44445566666554
Done!