BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046632
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 20/168 (11%)
Query: 8 ALPPGYRFAPTDEEIVAHYLYNKVHGRPVSTSAVIDNIDVYRDENVWIRIFERTGENALY 67
+LPPG+RF PTDEE++ YL K G S +I ID+Y+ + + GE Y
Sbjct: 19 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ-LIAEIDLYKFDPWVLPNKALFGEKEWY 77
Query: 68 FFTTLKKKTENGVQVERETNCGTWRSQKNTRIYRHRYNKTG-DKII--KKQHIGSRRNFT 124
FF+ +K NG + R G W++ TG DKII + Q +G ++
Sbjct: 78 FFSPRDRKYPNGSRPNRVAGSGYWKA-------------TGTDKIISTEGQRVGIKKALV 124
Query: 125 YVPKEGSRGGVIKGTWVMHEYRLDGISISNARINNIGDYVICRIKKKQ 172
+ + +G K W+MHEYRL S N + D+V+CRI KKQ
Sbjct: 125 FYIGKAPKG--TKTNWIMHEYRLIEPSRRNGS-TKLDDWVLCRIYKKQ 169
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 8 ALPPGYRFAPTDEEIVAHYLYNKVHGRPVSTSAVIDNIDVYRDENVWIRIFERTGENALY 67
+LPPG+RF PTDEE++ YL K G S +I ID+Y+ + + GE Y
Sbjct: 16 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ-LIAEIDLYKFDPWVLPNKALFGEKEWY 74
Query: 68 FFTTLKKKTENGVQVERETNCGTWRSQKNTRIYRHRYNKTGDKII--KKQHIGSRRNFTY 125
FF+ +K NG + R G W++ DKII + Q +G ++ +
Sbjct: 75 FFSPRDRKYPNGSRPNRVAGSGYWKATGT------------DKIISTEGQRVGIKKALVF 122
Query: 126 VPKEGSRGGVIKGTWVMHEYRLDGISISNARINNIGDYVICRIKKKQ 172
+ +G K W+MHEYRL S N + D+V+CRI KKQ
Sbjct: 123 YIGKAPKG--TKTNWIMHEYRLIEPSRRNGS-TKLDDWVLCRIYKKQ 166
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 9 LPPGYRFAPTDEEIVAHYLYNKVHGRPVSTSAVIDNIDVYRDENVWIRIFERTGENALYF 68
LPPG+RF PTD+E+V HYL K G+ + +I +D+Y+ + + G YF
Sbjct: 15 LPPGFRFHPTDDELVEHYLCRKAAGQRLPVP-IIAEVDLYKFDPWDLPERALFGAREWYF 73
Query: 69 FTTLKKKTENGVQVERETNCGTWRSQKNTRIYRHRYNKTGDKII--KKQHIGSRRNFTYV 126
FT +K NG + R G W++ DK + + + +G ++ +
Sbjct: 74 FTPRDRKYPNGSRPNRAAGNGYWKAT------------GADKPVAPRGRTLGIKKALVFY 121
Query: 127 PKEGSRGGVIKGTWVMHEYRLDGISISNARIN----NIGDYVICRIKKKQ 172
+ RG +K W+MHEYRL + A + D+V+CR+ K+
Sbjct: 122 AGKAPRG--VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169
>pdb|2XWX|A Chain A, Vibrio Cholerae Colonization Factor Gbpa Crystal Structure
pdb|2XWX|B Chain B, Vibrio Cholerae Colonization Factor Gbpa Crystal Structure
Length = 391
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
Query: 41 VIDNIDVYRDENVWIRIFERTGENALYFFTTLKKKTENGVQVERETNCGTWRSQKNTRIY 100
+I ++D+ + V+ R+F+ GEN Y +TE + E T W T+I
Sbjct: 194 IIPSMDLSIGDTVYTRVFDNDGENPAY-------RTELKIDSETLTKANQWSYALATKI- 245
Query: 101 RHRYNKTGDKIIKKQHIGSRRNFTYVPKEGS 131
++ K+Q G +VP G+
Sbjct: 246 --------NQTQKQQRAGQLNGDQFVPVYGT 268
>pdb|1YEM|A Chain A, Conserved Hypothetical Protein Pfu-838710-001 From
Pyrococcus Furiosus
pdb|1YEM|B Chain B, Conserved Hypothetical Protein Pfu-838710-001 From
Pyrococcus Furiosus
Length = 179
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 132 RGGVIKGTWVMHEYRLDGISISNARINNIGDYVICRIKKKQPK 174
+ + K WV Y+L+G+++ R+ IGD+V + P+
Sbjct: 103 QATIKKKRWV---YKLNGVTLEVNRVEGIGDFVDIEVISDSPE 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,432,426
Number of Sequences: 62578
Number of extensions: 315878
Number of successful extensions: 647
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 8
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)