Query 046632
Match_columns 225
No_of_seqs 167 out of 953
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 04:21:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 2.1E-60 7.2E-65 393.0 15.0 157 4-173 10-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.4E-59 4.6E-64 387.6 14.2 156 5-174 13-168 (171)
3 1cmb_A Met APO-repressor; DNA- 53.2 10 0.00035 27.3 2.9 39 16-59 50-88 (104)
4 2xr4_A Lectin; sugar binding p 37.7 7.8 0.00027 29.0 0.3 17 1-17 1-17 (116)
5 1ldd_A APC2WHB, anaphase promo 36.0 19 0.00065 24.8 2.1 28 9-37 36-64 (74)
6 2chh_A Protein RSC3288; lectin 33.6 9.9 0.00034 28.4 0.3 17 1-17 1-17 (114)
7 4dox_A Coat protein; all helix 26.9 35 0.0012 28.5 2.6 26 6-31 152-177 (226)
8 3dz1_A Dihydrodipicolinate syn 24.4 20 0.0007 30.8 0.7 21 5-27 105-125 (313)
9 3cpr_A Dihydrodipicolinate syn 23.2 19 0.00067 30.8 0.3 22 5-27 114-135 (304)
10 1f6k_A N-acetylneuraminate lya 23.0 21 0.00071 30.4 0.5 21 6-27 103-123 (293)
11 2ehh_A DHDPS, dihydrodipicolin 22.9 21 0.00072 30.4 0.5 21 6-27 99-119 (294)
12 2ojp_A DHDPS, dihydrodipicolin 22.6 21 0.00073 30.3 0.5 31 6-38 100-130 (292)
13 3fkr_A L-2-keto-3-deoxyarabona 22.4 27 0.00093 30.0 1.1 23 5-27 106-130 (309)
14 2nuw_A 2-keto-3-deoxygluconate 22.1 27 0.00092 29.7 1.0 22 5-27 94-116 (288)
15 2yxg_A DHDPS, dihydrodipicolin 22.0 22 0.00076 30.2 0.5 21 6-27 99-119 (289)
16 2rfg_A Dihydrodipicolinate syn 22.0 25 0.00087 30.0 0.8 22 5-27 98-119 (297)
17 2wkj_A N-acetylneuraminate lya 21.7 23 0.00078 30.4 0.5 21 6-27 110-130 (303)
18 3b4u_A Dihydrodipicolinate syn 21.5 28 0.00096 29.6 1.0 22 5-27 101-123 (294)
19 2vc6_A MOSA, dihydrodipicolina 21.1 24 0.00082 30.0 0.5 21 6-27 99-119 (292)
20 3d0c_A Dihydrodipicolinate syn 21.0 29 0.00099 29.9 1.0 32 5-38 109-140 (314)
21 1o5k_A DHDPS, dihydrodipicolin 20.9 24 0.00083 30.2 0.5 31 6-38 111-141 (306)
22 2v9d_A YAGE; dihydrodipicolini 20.4 25 0.00086 30.8 0.5 31 6-38 130-160 (343)
23 2r91_A 2-keto-3-deoxy-(6-phosp 20.3 30 0.001 29.3 0.9 22 5-27 93-115 (286)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=2.1e-60 Score=393.02 Aligned_cols=157 Identities=29% Similarity=0.585 Sum_probs=136.2
Q ss_pred CCCCCCCCcceeCCChHHHHHHHHHhhhcCCCCCCCceeeccCCCCCCCccccceeecCcceEEEEEcccccccCCcccc
Q 046632 4 HQLPALPPGYRFAPTDEEIVAHYLYNKVHGRPVSTSAVIDNIDVYRDENVWIRIFERTGENALYFFTTLKKKTENGVQVE 83 (225)
Q Consensus 4 ~~~~~LPpGfRF~PTDeELv~~YL~~ki~g~~l~~~~~I~~~Dvy~~~Pw~Lp~~~~~g~~~wyFF~~~~~k~~~g~R~~ 83 (225)
.+.+.|||||||+|||||||.|||++|+.|.+++. .+|+++|||++|||+||+.+..|+.+||||+++++||++|.|++
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~-~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSS-SCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSC
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCc-CeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCce
Confidence 35689999999999999999999999999999998 89999999999999999998888999999999999999999999
Q ss_pred cccCCceeeecCCceeEEcccCCCCcccccceeEEEEEeeeeeccCCCCCCCcccCeEEEEEEeCCCCccc----cccCC
Q 046632 84 RETNCGTWRSQKNTRIYRHRYNKTGDKIIKKQHIGSRRNFTYVPKEGSRGGVIKGTWVMHEYRLDGISISN----ARINN 159 (225)
Q Consensus 84 R~~~~G~Wk~~g~~k~I~~~~~~~g~~~~~g~~vG~kk~l~Fy~~~g~~~~~~kT~WvMhEY~l~~~~~~~----~~~~~ 159 (225)
|+|++||||++|++++|... |.+||+||+|+|| .|+++++.+|+|+||||+|......+ .....
T Consensus 89 R~t~~G~WkatG~dk~I~~~----------g~~vG~KktLvFy--~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~ 156 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAPR----------GRTLGIKKALVFY--AGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLR 156 (174)
T ss_dssp EEETTEEEEECSCCEEECCS----------SSCCEEEEEEEEE--ESSTTSCEEEEEEEEEEEECSCC-----------C
T ss_pred eecCCceEccCCCCcEEeeC----------CcEEEEEEEEEEe--cCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCC
Confidence 99999999999999999864 3789999999999 99999999999999999999875432 11235
Q ss_pred CCcEEEEEEEEcCC
Q 046632 160 IGDYVICRIKKKQP 173 (225)
Q Consensus 160 ~~~~VLCrI~~k~~ 173 (225)
.++|||||||+|+.
T Consensus 157 ~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 157 LDDWVLCRLYNKKN 170 (174)
T ss_dssp CSSEEEEEEEESCC
T ss_pred CCCEEEEEEEEcCC
Confidence 78999999999965
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.4e-59 Score=387.63 Aligned_cols=156 Identities=34% Similarity=0.601 Sum_probs=132.1
Q ss_pred CCCCCCCcceeCCChHHHHHHHHHhhhcCCCCCCCceeeccCCCCCCCccccceeecCcceEEEEEcccccccCCccccc
Q 046632 5 QLPALPPGYRFAPTDEEIVAHYLYNKVHGRPVSTSAVIDNIDVYRDENVWIRIFERTGENALYFFTTLKKKTENGVQVER 84 (225)
Q Consensus 5 ~~~~LPpGfRF~PTDeELv~~YL~~ki~g~~l~~~~~I~~~Dvy~~~Pw~Lp~~~~~g~~~wyFF~~~~~k~~~g~R~~R 84 (225)
..+.|||||||+|||||||.|||++|+.|.+++. .+|+++|||++|||+||+.+..|+.+||||+++++||++|.|++|
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~-~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R 91 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSL-QLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNR 91 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSS-CCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCE
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCC-CeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccc
Confidence 4589999999999999999999999999999998 899999999999999999988889999999999999999999999
Q ss_pred ccCCceeeecCCceeEEcccCCCCcccccceeEEEEEeeeeeccCCCCCCCcccCeEEEEEEeCCCCccccccCCCCcEE
Q 046632 85 ETNCGTWRSQKNTRIYRHRYNKTGDKIIKKQHIGSRRNFTYVPKEGSRGGVIKGTWVMHEYRLDGISISNARINNIGDYV 164 (225)
Q Consensus 85 ~~~~G~Wk~~g~~k~I~~~~~~~g~~~~~g~~vG~kk~l~Fy~~~g~~~~~~kT~WvMhEY~l~~~~~~~~~~~~~~~~V 164 (225)
+|++||||++|++++|... +.+||+||+|+|| .|+++++.+|+|+||||+|......+ .....++||
T Consensus 92 ~t~~G~Wk~tG~~k~I~~~----------~~~vG~KktLvFy--~g~~p~g~kT~WvMhEY~l~~~~~~~-~~~~~~~~V 158 (171)
T 1ut7_A 92 VAGSGYWKATGTDKIISTE----------GQRVGIKKALVFY--IGKAPKGTKTNWIMHEYRLIEPSRRN-GSTKLDDWV 158 (171)
T ss_dssp EETTEEEEEEEEEEEEEET----------TEEEEEEEEEEEE--ESSTTSCEEEEEEEEEEEECCCC---------CCEE
T ss_pred cCCCCEEeccCCCceEEec----------CcEEEEEEEEEEE--cCcCCCCCcCCeEEEEEEcCCCcccc-CcccCCCEE
Confidence 9999999999999999974 3789999999999 89999999999999999999875321 123578999
Q ss_pred EEEEEEcCCC
Q 046632 165 ICRIKKKQPK 174 (225)
Q Consensus 165 LCrI~~k~~~ 174 (225)
|||||+|+..
T Consensus 159 lCrv~~k~~~ 168 (171)
T 1ut7_A 159 LCRIYKKQSS 168 (171)
T ss_dssp EEEEEECC--
T ss_pred EEEEEEcCCC
Confidence 9999999764
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=53.22 E-value=10 Score=27.28 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=33.4
Q ss_pred CCChHHHHHHHHHhhhcCCCCCCCceeeccCCCCCCCcccccee
Q 046632 16 APTDEEIVAHYLYNKVHGRPVSTSAVIDNIDVYRDENVWIRIFE 59 (225)
Q Consensus 16 ~PTDeELv~~YL~~ki~g~~l~~~~~I~~~Dvy~~~Pw~Lp~~~ 59 (225)
|-|-.||++.-...-..|+|||. +.|+-+..|.++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~-----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD-----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC-----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC-----chhhhhcCCccchHHH
Confidence 57888999887788889999998 6788999999999764
No 4
>2xr4_A Lectin; sugar binding protein, LUNG, pathogen; 1.90A {Burkholderia cenocepacia}
Probab=37.74 E-value=7.8 Score=29.05 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCcceeCC
Q 046632 1 MERHQLPALPPGYRFAP 17 (225)
Q Consensus 1 M~~~~~~~LPpGfRF~P 17 (225)
||+++.++||+..||-=
T Consensus 1 m~~~g~F~LP~ni~Fg~ 17 (116)
T 2xr4_A 1 MERDGTFNLPPHIKFGV 17 (116)
T ss_dssp CCBSSEEECCTTCEEEE
T ss_pred CcccceeeCCCCcEEeE
Confidence 99999999999999963
No 5
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=36.02 E-value=19 Score=24.81 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=23.1
Q ss_pred CCCcceeCC-ChHHHHHHHHHhhhcCCCCC
Q 046632 9 LPPGYRFAP-TDEEIVAHYLYNKVHGRPVS 37 (225)
Q Consensus 9 LPpGfRF~P-TDeELv~~YL~~ki~g~~l~ 37 (225)
.|.|+.|.. |++||-. ||..++....|.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 377999998 9999865 999999887654
No 6
>2chh_A Protein RSC3288; lectin, sugar-binding protein, D-mannose, plant pathogen, hypothetical protein; HET: MAN BMA; 1.0A {Ralstonia solanacearum} SCOP: b.115.1.1 PDB: 1uqx_A*
Probab=33.62 E-value=9.9 Score=28.41 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCcceeCC
Q 046632 1 MERHQLPALPPGYRFAP 17 (225)
Q Consensus 1 M~~~~~~~LPpGfRF~P 17 (225)
|++++.++||+..||-=
T Consensus 1 ~~~~g~F~LP~ni~Fg~ 17 (114)
T 2chh_A 1 MAQQGVFTLPANTSFGV 17 (114)
T ss_dssp -CCCSEEECCTTCEEEE
T ss_pred CcccceeeCCCCcEEeE
Confidence 89999999999999963
No 7
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=26.91 E-value=35 Score=28.49 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=18.5
Q ss_pred CCCCCCcceeCCChHHHHHHHHHhhh
Q 046632 6 LPALPPGYRFAPTDEEIVAHYLYNKV 31 (225)
Q Consensus 6 ~~~LPpGfRF~PTDeELv~~YL~~ki 31 (225)
.++-+-|..+.||++|+|.|=..+++
T Consensus 152 Al~P~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 152 AMQPPSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp SCCCTTCCSSCCCHHHHHHHHTC---
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 34445599999999999998766554
No 8
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=24.39 E-value=20 Score=30.84 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=15.6
Q ss_pred CCCCCCCcceeCCChHHHHHHHH
Q 046632 5 QLPALPPGYRFAPTDEEIVAHYL 27 (225)
Q Consensus 5 ~~~~LPpGfRF~PTDeELv~~YL 27 (225)
+.+-+||- |.||+++|+.||-
T Consensus 105 avlv~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 105 GVMIAPPP--SLRTDEQITTYFR 125 (313)
T ss_dssp EEEECCCT--TCCSHHHHHHHHH
T ss_pred EEEECCCC--CCCCHHHHHHHHH
Confidence 34557774 5699999998775
No 9
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=23.21 E-value=19 Score=30.85 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=16.7
Q ss_pred CCCCCCCcceeCCChHHHHHHHH
Q 046632 5 QLPALPPGYRFAPTDEEIVAHYL 27 (225)
Q Consensus 5 ~~~~LPpGfRF~PTDeELv~~YL 27 (225)
+.+-+|| |.|.||+++|+.||-
T Consensus 114 avlv~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 114 GLLVVTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp EEEEECC-CSSCCCHHHHHHHHH
T ss_pred EEEECCC-CCCCCCHHHHHHHHH
Confidence 3455677 558899999999874
No 10
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=23.00 E-value=21 Score=30.42 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=16.0
Q ss_pred CCCCCCcceeCCChHHHHHHHH
Q 046632 6 LPALPPGYRFAPTDEEIVAHYL 27 (225)
Q Consensus 6 ~~~LPpGfRF~PTDeELv~~YL 27 (225)
.+-+||-| |.||+++|+.||-
T Consensus 103 vlv~~P~y-~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 103 LSAVTPFY-YKFSFPEIKHYYD 123 (293)
T ss_dssp EEEECCCS-SCCCHHHHHHHHH
T ss_pred EEECCCCC-CCCCHHHHHHHHH
Confidence 34567754 8899999999775
No 11
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=22.91 E-value=21 Score=30.42 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=15.9
Q ss_pred CCCCCCcceeCCChHHHHHHHH
Q 046632 6 LPALPPGYRFAPTDEEIVAHYL 27 (225)
Q Consensus 6 ~~~LPpGfRF~PTDeELv~~YL 27 (225)
.+-+||- .|.||+++|+.||-
T Consensus 99 vlv~~P~-y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 99 ALVVVPY-YNKPTQRGLYEHFK 119 (294)
T ss_dssp EEEECCC-SSCCCHHHHHHHHH
T ss_pred EEECCCC-CCCCCHHHHHHHHH
Confidence 3456674 48899999999874
No 12
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=22.64 E-value=21 Score=30.33 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=19.5
Q ss_pred CCCCCCcceeCCChHHHHHHHHHhhhcCCCCCC
Q 046632 6 LPALPPGYRFAPTDEEIVAHYLYNKVHGRPVST 38 (225)
Q Consensus 6 ~~~LPpGfRF~PTDeELv~~YL~~ki~g~~l~~ 38 (225)
.+-+||-| |.||+++|+.||-. -+...++|+
T Consensus 100 vlv~~P~y-~~~s~~~l~~~f~~-ia~a~~lPi 130 (292)
T 2ojp_A 100 CLTVTPYY-NRPSQEGLYQHFKA-IAEHTDLPQ 130 (292)
T ss_dssp EEEECCCS-SCCCHHHHHHHHHH-HHTTCSSCE
T ss_pred EEECCCCC-CCCCHHHHHHHHHH-HHHhcCCCE
Confidence 34567744 88999999987742 233334543
No 13
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=22.45 E-value=27 Score=30.01 Aligned_cols=23 Identities=26% Similarity=0.454 Sum_probs=16.8
Q ss_pred CCCCCCCcce--eCCChHHHHHHHH
Q 046632 5 QLPALPPGYR--FAPTDEEIVAHYL 27 (225)
Q Consensus 5 ~~~~LPpGfR--F~PTDeELv~~YL 27 (225)
+.+-+||=|- |.||+++|+.||-
T Consensus 106 avlv~~Pyy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 106 MVMAMPPYHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp EEEECCSCBTTTBCCCHHHHHHHHH
T ss_pred EEEEcCCCCccCCCCCHHHHHHHHH
Confidence 3456777332 7999999998775
No 14
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=22.06 E-value=27 Score=29.67 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=16.4
Q ss_pred CCCCCCCcceeC-CChHHHHHHHH
Q 046632 5 QLPALPPGYRFA-PTDEEIVAHYL 27 (225)
Q Consensus 5 ~~~~LPpGfRF~-PTDeELv~~YL 27 (225)
+.+-+||-| |. ||+++|+.||-
T Consensus 94 avlv~~P~y-~~~~s~~~l~~~f~ 116 (288)
T 2nuw_A 94 GVSSHSPYY-FPRLPEKFLAKYYE 116 (288)
T ss_dssp EEEECCCCS-SCSCCHHHHHHHHH
T ss_pred EEEEcCCcC-CCCCCHHHHHHHHH
Confidence 335567754 78 99999999874
No 15
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=22.03 E-value=22 Score=30.16 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=15.9
Q ss_pred CCCCCCcceeCCChHHHHHHHH
Q 046632 6 LPALPPGYRFAPTDEEIVAHYL 27 (225)
Q Consensus 6 ~~~LPpGfRF~PTDeELv~~YL 27 (225)
.+-+||- .|.||+++|+.||-
T Consensus 99 vlv~~P~-y~~~s~~~l~~~f~ 119 (289)
T 2yxg_A 99 VLSITPY-YNKPTQEGLRKHFG 119 (289)
T ss_dssp EEEECCC-SSCCCHHHHHHHHH
T ss_pred EEECCCC-CCCCCHHHHHHHHH
Confidence 3456774 48899999999874
No 16
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=22.03 E-value=25 Score=29.98 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=16.4
Q ss_pred CCCCCCCcceeCCChHHHHHHHH
Q 046632 5 QLPALPPGYRFAPTDEEIVAHYL 27 (225)
Q Consensus 5 ~~~~LPpGfRF~PTDeELv~~YL 27 (225)
+.+-+||-| |.||+++|+.||-
T Consensus 98 avlv~~P~y-~~~s~~~l~~~f~ 119 (297)
T 2rfg_A 98 AVLCVAGYY-NRPSQEGLYQHFK 119 (297)
T ss_dssp EEEECCCTT-TCCCHHHHHHHHH
T ss_pred EEEEcCCCC-CCCCHHHHHHHHH
Confidence 345567744 8899999999774
No 17
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=21.71 E-value=23 Score=30.38 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=16.0
Q ss_pred CCCCCCcceeCCChHHHHHHHH
Q 046632 6 LPALPPGYRFAPTDEEIVAHYL 27 (225)
Q Consensus 6 ~~~LPpGfRF~PTDeELv~~YL 27 (225)
.+-+||-| |.||+++|+.||-
T Consensus 110 vlv~~P~y-~~~s~~~l~~~f~ 130 (303)
T 2wkj_A 110 VSAVTPFY-YPFSFEEHCDHYR 130 (303)
T ss_dssp EEEECCCS-SCCCHHHHHHHHH
T ss_pred EEecCCCC-CCCCHHHHHHHHH
Confidence 34567754 8899999999874
No 18
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=21.47 E-value=28 Score=29.64 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=16.3
Q ss_pred CCCCCCCcceeC-CChHHHHHHHH
Q 046632 5 QLPALPPGYRFA-PTDEEIVAHYL 27 (225)
Q Consensus 5 ~~~~LPpGfRF~-PTDeELv~~YL 27 (225)
+.+-+||-| |. ||+++|+.||-
T Consensus 101 avlv~~P~y-~~~~s~~~l~~~f~ 123 (294)
T 3b4u_A 101 NILLAPPSY-FKNVSDDGLFAWFS 123 (294)
T ss_dssp EEEECCCCS-SCSCCHHHHHHHHH
T ss_pred EEEEcCCcC-CCCCCHHHHHHHHH
Confidence 335566754 78 99999999874
No 19
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=21.08 E-value=24 Score=30.00 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=16.1
Q ss_pred CCCCCCcceeCCChHHHHHHHH
Q 046632 6 LPALPPGYRFAPTDEEIVAHYL 27 (225)
Q Consensus 6 ~~~LPpGfRF~PTDeELv~~YL 27 (225)
.+-+|| |.|.||+++|+.||-
T Consensus 99 vlv~~P-~y~~~s~~~l~~~f~ 119 (292)
T 2vc6_A 99 VLIVSP-YYNKPTQEGIYQHFK 119 (292)
T ss_dssp EEEECC-CSSCCCHHHHHHHHH
T ss_pred EEEcCC-CCCCCCHHHHHHHHH
Confidence 345677 458899999999874
No 20
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=20.99 E-value=29 Score=29.91 Aligned_cols=32 Identities=16% Similarity=0.027 Sum_probs=20.2
Q ss_pred CCCCCCCcceeCCChHHHHHHHHHhhhcCCCCCC
Q 046632 5 QLPALPPGYRFAPTDEEIVAHYLYNKVHGRPVST 38 (225)
Q Consensus 5 ~~~~LPpGfRF~PTDeELv~~YL~~ki~g~~l~~ 38 (225)
+.+-+||- .|.||+++|+.||-. -+...++|+
T Consensus 109 avlv~~P~-y~~~s~~~l~~~f~~-va~a~~lPi 140 (314)
T 3d0c_A 109 CVMIHQPV-HPYITDAGAVEYYRN-IIEALDAPS 140 (314)
T ss_dssp EEEECCCC-CSCCCHHHHHHHHHH-HHHHSSSCE
T ss_pred EEEECCCC-CCCCCHHHHHHHHHH-HHHhCCCCE
Confidence 34556775 488999999987742 233334554
No 21
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=20.87 E-value=24 Score=30.25 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=19.7
Q ss_pred CCCCCCcceeCCChHHHHHHHHHhhhcCCCCCC
Q 046632 6 LPALPPGYRFAPTDEEIVAHYLYNKVHGRPVST 38 (225)
Q Consensus 6 ~~~LPpGfRF~PTDeELv~~YL~~ki~g~~l~~ 38 (225)
.+-+||- .|.||+++|+.||-. -+...++|+
T Consensus 111 vlv~~P~-y~~~s~~~l~~~f~~-va~a~~lPi 141 (306)
T 1o5k_A 111 VLVVTPY-YNKPTQEGLYQHYKY-ISERTDLGI 141 (306)
T ss_dssp EEEECCC-SSCCCHHHHHHHHHH-HHTTCSSCE
T ss_pred EEECCCC-CCCCCHHHHHHHHHH-HHHhCCCCE
Confidence 3456774 488999999987742 333334554
No 22
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=20.43 E-value=25 Score=30.80 Aligned_cols=31 Identities=6% Similarity=0.261 Sum_probs=19.8
Q ss_pred CCCCCCcceeCCChHHHHHHHHHhhhcCCCCCC
Q 046632 6 LPALPPGYRFAPTDEEIVAHYLYNKVHGRPVST 38 (225)
Q Consensus 6 ~~~LPpGfRF~PTDeELv~~YL~~ki~g~~l~~ 38 (225)
.+-+||-| |.||+++|+.||-. -+...++|+
T Consensus 130 vlv~~P~Y-~~~s~~~l~~~f~~-VA~a~~lPi 160 (343)
T 2v9d_A 130 IVVINPYY-WKVSEANLIRYFEQ-VADSVTLPV 160 (343)
T ss_dssp EEEECCSS-SCCCHHHHHHHHHH-HHHTCSSCE
T ss_pred EEECCCCC-CCCCHHHHHHHHHH-HHHhcCCCE
Confidence 34567744 88999999987742 333334553
No 23
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=20.27 E-value=30 Score=29.27 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=16.5
Q ss_pred CCCCCCCcceeC-CChHHHHHHHH
Q 046632 5 QLPALPPGYRFA-PTDEEIVAHYL 27 (225)
Q Consensus 5 ~~~~LPpGfRF~-PTDeELv~~YL 27 (225)
+.+-+||-| |. ||+++|+.||-
T Consensus 93 avlv~~P~y-~~~~s~~~l~~~f~ 115 (286)
T 2r91_A 93 AVASLPPYY-FPRLSERQIAKYFR 115 (286)
T ss_dssp EEEECCSCS-STTCCHHHHHHHHH
T ss_pred EEEEcCCcC-CCCCCHHHHHHHHH
Confidence 345567754 88 99999999875
Done!