BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046633
         (176 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3E8J|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Naiffi
 pdb|3E8J|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Naiffi
          Length = 306

 Score = 29.3 bits (64), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 15  HPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRH 74
           HPD+     + +     V LV H  N HV T+H +  R F     G  PV  +G      
Sbjct: 84  HPDMAGCNYQAM----GVSLVIHPKNPHVPTSHANV-RLFVAEKEGKEPVWWFGGGFDLT 138

Query: 75  FFYRLHALCAYLRCLFVALCVLLRSSSYDVIIA 107
            +Y +   C Y   +   LC    +  Y+   A
Sbjct: 139 PYYAVEEDCYYFHHVAQELCRPFGADVYERFKA 171


>pdb|3EJO|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Donovani
 pdb|3EJO|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Donovani
          Length = 310

 Score = 28.9 bits (63), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 31  AVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAYLRCLF 90
            V LV H  N HV T+H +  R F     G  PV  +G       +Y +   C Y   + 
Sbjct: 100 GVSLVIHPKNPHVPTSHANV-RLFVAEREGKEPVWWFGGGFDLTPYYAVEEDCRYFHQVA 158

Query: 91  VALCVLLRSSSY 102
             LC    +  Y
Sbjct: 159 QDLCKPFGADVY 170


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.332    0.143    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,581,095
Number of Sequences: 62578
Number of extensions: 155036
Number of successful extensions: 453
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 2
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 48 (23.1 bits)