Query 046633
Match_columns 176
No_of_seqs 171 out of 323
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 02:52:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02949 transferase, transfer 100.0 3.7E-34 8E-39 260.7 12.1 152 4-166 29-220 (463)
2 cd03806 GT1_ALG11_like This fa 100.0 2.8E-32 6.1E-37 242.6 12.7 150 10-165 2-188 (419)
3 KOG0853 Glycosyltransferase [C 100.0 8.7E-31 1.9E-35 241.9 0.9 156 6-166 32-209 (495)
4 cd03805 GT1_ALG2_like This fam 99.9 6.6E-26 1.4E-30 192.7 14.4 152 9-165 1-153 (392)
5 PF13439 Glyco_transf_4: Glyco 98.9 1.1E-08 2.3E-13 76.3 7.5 106 15-138 6-112 (177)
6 PF13579 Glyco_trans_4_4: Glyc 98.7 4.7E-08 1E-12 71.7 7.7 114 21-152 1-119 (160)
7 cd03785 GT1_MurG MurG is an N- 98.6 5.3E-07 1.2E-11 76.1 11.1 111 14-127 3-117 (350)
8 cd03794 GT1_wbuB_like This fam 98.6 8.7E-07 1.9E-11 71.9 10.9 118 10-135 1-132 (394)
9 cd03820 GT1_amsD_like This fam 98.6 4E-07 8.8E-12 72.8 8.8 114 10-139 1-117 (348)
10 cd03804 GT1_wbaZ_like This fam 98.5 4.7E-07 1E-11 76.7 9.4 117 10-142 1-118 (351)
11 PRK10307 putative glycosyl tra 98.5 1.5E-06 3.1E-11 76.1 12.1 37 9-47 1-41 (412)
12 cd04955 GT1_like_6 This family 98.5 1.4E-06 3E-11 72.4 10.9 114 10-138 1-119 (363)
13 PRK00726 murG undecaprenyldiph 98.5 1.8E-06 3.8E-11 74.0 11.8 114 8-127 1-119 (357)
14 cd03802 GT1_AviGT4_like This f 98.5 2.4E-06 5.2E-11 70.4 11.4 42 9-50 1-48 (335)
15 PRK15179 Vi polysaccharide bio 98.5 2E-06 4.3E-11 83.3 12.3 58 10-68 283-357 (694)
16 PRK10125 putative glycosyl tra 98.4 5.4E-06 1.2E-10 74.4 11.9 41 9-49 1-41 (405)
17 cd04951 GT1_WbdM_like This fam 98.3 3.7E-06 8E-11 69.7 9.6 40 10-49 1-40 (360)
18 cd03822 GT1_ecORF704_like This 98.3 7.2E-06 1.6E-10 67.3 11.1 43 10-52 1-44 (366)
19 cd03809 GT1_mtfB_like This fam 98.3 7E-06 1.5E-10 67.3 10.5 43 10-52 1-46 (365)
20 cd03807 GT1_WbnK_like This fam 98.3 4.1E-06 8.9E-11 67.7 8.2 89 10-110 1-89 (365)
21 cd03811 GT1_WabH_like This fam 98.3 4.7E-06 1E-10 66.6 8.3 43 10-52 1-43 (353)
22 cd03812 GT1_CapH_like This fam 98.2 5.5E-06 1.2E-10 69.0 8.4 41 10-50 1-41 (358)
23 cd04962 GT1_like_5 This family 98.2 7.7E-06 1.7E-10 68.8 8.9 39 9-48 1-39 (371)
24 cd03816 GT1_ALG1_like This fam 98.2 2.1E-05 4.5E-10 70.1 11.8 116 8-135 3-129 (415)
25 cd03800 GT1_Sucrose_synthase T 98.1 1.7E-05 3.7E-10 66.9 9.7 105 20-127 20-129 (398)
26 cd03819 GT1_WavL_like This fam 98.1 5.6E-06 1.2E-10 68.8 6.4 34 14-47 3-36 (355)
27 cd03825 GT1_wcfI_like This fam 98.1 6.9E-06 1.5E-10 68.2 6.7 41 9-49 1-41 (365)
28 cd03823 GT1_ExpE7_like This fa 98.1 2.5E-05 5.5E-10 63.5 9.5 45 10-54 1-48 (359)
29 cd03821 GT1_Bme6_like This fam 98.1 1.8E-05 3.9E-10 64.2 7.9 41 10-50 1-43 (375)
30 TIGR03088 stp2 sugar transfera 98.0 2.4E-05 5.1E-10 66.9 8.3 86 9-109 2-89 (374)
31 cd03796 GT1_PIG-A_like This fa 98.0 2.7E-05 5.9E-10 68.1 8.7 51 14-67 9-59 (398)
32 PLN02871 UDP-sulfoquinovose:DA 98.0 2.6E-05 5.5E-10 70.3 8.3 44 6-49 56-102 (465)
33 cd03792 GT1_Trehalose_phosphor 97.9 3.6E-05 7.9E-10 66.3 7.3 39 10-48 1-39 (372)
34 cd01635 Glycosyltransferase_GT 97.9 4.6E-05 1E-09 58.2 7.0 82 12-140 2-88 (229)
35 cd03795 GT1_like_4 This family 97.9 9.3E-05 2E-09 61.2 9.3 42 10-51 1-44 (357)
36 cd03808 GT1_cap1E_like This fa 97.9 0.00045 9.7E-09 55.5 12.8 40 10-51 1-40 (359)
37 cd03801 GT1_YqgM_like This fam 97.9 0.00034 7.4E-09 55.8 11.9 117 10-140 1-121 (374)
38 KOG1387 Glycosyltransferase [C 97.9 8.4E-05 1.8E-09 68.3 9.3 126 7-139 42-184 (465)
39 TIGR02472 sucr_P_syn_N sucrose 97.9 9.2E-05 2E-09 66.3 9.5 49 19-68 24-81 (439)
40 TIGR01133 murG undecaprenyldip 97.9 0.00027 5.9E-09 59.6 11.8 114 9-127 1-118 (348)
41 cd03818 GT1_ExpC_like This fam 97.8 0.00024 5.3E-09 62.0 11.3 111 10-136 1-118 (396)
42 cd03817 GT1_UGDG_like This fam 97.7 0.00024 5.2E-09 57.8 9.3 41 10-50 1-43 (374)
43 cd03798 GT1_wlbH_like This fam 97.7 0.00036 7.8E-09 56.1 10.2 39 12-50 2-43 (377)
44 PRK09922 UDP-D-galactose:(gluc 97.7 0.00018 3.8E-09 62.2 7.6 39 9-47 1-42 (359)
45 PF09314 DUF1972: Domain of un 97.6 0.0017 3.7E-08 54.0 12.8 132 8-154 1-145 (185)
46 TIGR03449 mycothiol_MshA UDP-N 97.6 0.00053 1.2E-08 59.4 9.5 54 13-67 11-66 (405)
47 PF13477 Glyco_trans_4_2: Glyc 97.6 0.0022 4.7E-08 47.6 11.5 108 10-140 1-112 (139)
48 cd03814 GT1_like_2 This family 97.5 0.0007 1.5E-08 55.3 9.1 40 10-49 1-42 (364)
49 cd03799 GT1_amsK_like This is 97.5 0.0012 2.6E-08 54.5 10.5 39 10-49 1-39 (355)
50 cd03791 GT1_Glycogen_synthase_ 97.4 0.0011 2.5E-08 59.0 9.4 41 10-50 1-45 (476)
51 PF13528 Glyco_trans_1_3: Glyc 97.2 0.0019 4.2E-08 54.3 8.7 38 9-49 1-38 (318)
52 PLN02275 transferase, transfer 97.2 0.004 8.7E-08 54.6 10.6 104 19-127 13-131 (371)
53 cd03784 GT1_Gtf_like This fami 97.1 0.0051 1.1E-07 53.6 10.0 38 9-48 1-38 (401)
54 TIGR02149 glgA_Coryne glycogen 97.1 0.0057 1.2E-07 52.1 9.9 106 9-127 1-111 (388)
55 PRK15490 Vi polysaccharide bio 96.9 0.0072 1.6E-07 58.1 10.0 118 9-127 162-308 (578)
56 cd05844 GT1_like_7 Glycosyltra 96.6 0.02 4.3E-07 48.1 9.3 112 10-136 1-114 (367)
57 PRK15484 lipopolysaccharide 1, 95.9 0.034 7.3E-07 49.0 7.5 109 15-135 15-129 (380)
58 PLN02939 transferase, transfer 95.8 0.061 1.3E-06 54.7 9.8 46 4-49 477-526 (977)
59 PF08660 Alg14: Oligosaccharid 95.7 0.053 1.1E-06 44.1 7.4 102 18-127 5-126 (170)
60 PRK00654 glgA glycogen synthas 95.7 0.021 4.6E-07 51.8 5.6 41 9-49 1-45 (466)
61 TIGR02095 glgA glycogen/starch 95.6 0.026 5.5E-07 51.0 5.6 41 9-49 1-45 (473)
62 PRK12446 undecaprenyldiphospho 95.5 0.18 3.8E-06 44.8 10.7 97 16-117 7-107 (352)
63 PRK13609 diacylglycerol glucos 95.5 0.025 5.4E-07 49.2 5.3 41 7-48 3-43 (380)
64 PLN02316 synthase/transferase 95.1 0.18 3.8E-06 51.7 10.4 45 5-49 584-632 (1036)
65 TIGR01426 MGT glycosyltransfer 94.8 0.093 2E-06 46.0 6.8 21 27-47 12-32 (392)
66 TIGR00661 MJ1255 conserved hyp 94.6 0.21 4.5E-06 43.0 8.2 120 10-138 1-129 (321)
67 COG4671 Predicted glycosyl tra 93.9 0.57 1.2E-05 43.4 10.0 110 5-120 6-130 (400)
68 COG0707 MurG UDP-N-acetylgluco 93.5 0.69 1.5E-05 41.8 9.7 98 18-118 8-108 (357)
69 PF04007 DUF354: Protein of un 93.3 0.35 7.6E-06 43.5 7.5 95 25-127 14-108 (335)
70 PF06564 YhjQ: YhjQ protein; 92.5 1.2 2.6E-05 38.6 9.4 107 9-118 1-134 (243)
71 TIGR03590 PseG pseudaminic aci 92.1 0.65 1.4E-05 39.8 7.2 111 16-143 10-125 (279)
72 TIGR02470 sucr_synth sucrose s 92.0 1.6 3.5E-05 43.7 10.7 42 8-49 255-319 (784)
73 PHA03392 egt ecdysteroid UDP-g 91.3 1.3 2.7E-05 41.7 8.8 38 9-48 21-59 (507)
74 PRK10037 cell division protein 90.3 4.8 0.00011 33.5 10.6 38 9-46 1-38 (250)
75 PLN02846 digalactosyldiacylgly 89.2 0.69 1.5E-05 43.4 5.1 43 7-49 3-48 (462)
76 PF08323 Glyco_transf_5: Starc 88.8 0.96 2.1E-05 38.2 5.4 40 10-49 1-44 (245)
77 PF02441 Flavoprotein: Flavopr 88.5 0.79 1.7E-05 34.9 4.2 38 9-49 1-38 (129)
78 TIGR02468 sucrsPsyn_pln sucros 88.5 1 2.2E-05 46.4 6.2 48 3-50 164-226 (1050)
79 PRK15427 colanic acid biosynth 88.4 7.4 0.00016 34.9 11.0 41 9-50 1-41 (406)
80 PF03033 Glyco_transf_28: Glyc 88.3 0.44 9.6E-06 35.3 2.7 30 18-47 6-35 (139)
81 PRK14099 glycogen synthase; Pr 87.8 1.3 2.7E-05 41.2 5.9 43 7-49 2-48 (485)
82 PF01975 SurE: Survival protei 87.3 3.6 7.9E-05 34.3 7.8 90 9-107 1-97 (196)
83 PRK14098 glycogen synthase; Pr 86.9 1.5 3.2E-05 40.8 5.8 42 7-48 4-49 (489)
84 COG1819 Glycosyl transferases, 84.4 1.4 3E-05 40.2 4.3 38 8-47 1-38 (406)
85 KOG2941 Beta-1,4-mannosyltrans 83.5 14 0.00029 34.8 10.2 105 4-118 8-119 (444)
86 PRK13886 conjugal transfer pro 83.2 7.1 0.00015 33.8 7.9 40 8-47 1-40 (241)
87 TIGR01007 eps_fam capsular exo 82.7 3.8 8.2E-05 32.8 5.7 39 9-47 17-55 (204)
88 PLN03007 UDP-glucosyltransfera 82.2 8.5 0.00018 35.7 8.6 38 9-48 6-43 (482)
89 PF03358 FMN_red: NADPH-depend 81.9 2.2 4.8E-05 32.4 3.9 47 9-55 1-48 (152)
90 COG0489 Mrp ATPases involved i 81.4 19 0.00041 31.0 9.9 39 8-46 56-94 (265)
91 PLN02208 glycosyltransferase f 81.3 12 0.00026 34.7 9.1 36 12-48 7-42 (442)
92 CHL00175 minD septum-site dete 80.7 4.7 0.0001 34.0 5.9 40 7-46 13-52 (281)
93 PRK00025 lpxB lipid-A-disaccha 79.9 13 0.00028 32.1 8.4 37 8-47 1-37 (380)
94 PRK05568 flavodoxin; Provision 79.6 4.9 0.00011 30.3 5.1 38 9-47 2-39 (142)
95 PLN00414 glycosyltransferase f 79.2 17 0.00037 33.7 9.5 36 12-48 7-42 (446)
96 PF12000 Glyco_trans_4_3: Gkyc 79.1 18 0.00039 29.7 8.6 88 36-136 1-97 (171)
97 PF13614 AAA_31: AAA domain; P 79.1 6.7 0.00015 29.5 5.8 38 11-48 2-39 (157)
98 PLN02448 UDP-glycosyltransfera 78.0 13 0.00028 34.3 8.2 41 6-48 8-50 (459)
99 PRK11519 tyrosine kinase; Prov 77.9 33 0.00072 33.6 11.4 39 8-46 525-563 (719)
100 PRK06756 flavodoxin; Provision 77.8 6 0.00013 30.3 5.2 39 8-47 1-39 (148)
101 PRK11914 diacylglycerol kinase 77.3 7.7 0.00017 33.4 6.2 45 4-48 4-49 (306)
102 PRK09271 flavodoxin; Provision 77.2 5.5 0.00012 31.3 4.9 37 9-46 1-37 (160)
103 KOG3062 RNA polymerase II elon 77.1 18 0.0004 32.1 8.5 85 12-119 3-90 (281)
104 COG1817 Uncharacterized protei 76.9 14 0.0003 33.9 7.9 95 25-127 14-109 (346)
105 KOG1111 N-acetylglucosaminyltr 76.4 4.3 9.4E-05 38.0 4.6 33 13-47 9-41 (426)
106 PLN00142 sucrose synthase 76.2 13 0.00027 37.7 8.1 30 20-49 302-343 (815)
107 TIGR02026 BchE magnesium-proto 75.5 3.8 8.2E-05 38.2 4.1 38 10-47 1-46 (497)
108 PRK05986 cob(I)alamin adenolsy 74.6 50 0.0011 27.7 11.1 101 10-114 24-128 (191)
109 TIGR03492 conserved hypothetic 74.4 8.2 0.00018 34.9 5.9 101 22-127 8-118 (396)
110 TIGR03371 cellulose_yhjQ cellu 74.3 7.6 0.00016 31.6 5.2 40 9-48 1-40 (246)
111 PRK03767 NAD(P)H:quinone oxido 74.1 8.3 0.00018 31.4 5.3 39 8-47 1-40 (200)
112 PF02951 GSH-S_N: Prokaryotic 73.4 4.5 9.7E-05 31.5 3.4 39 9-47 1-40 (119)
113 PRK06703 flavodoxin; Provision 73.3 8.1 0.00018 29.7 4.9 39 8-47 1-39 (151)
114 TIGR03029 EpsG chain length de 72.8 11 0.00025 31.5 6.0 40 7-46 101-140 (274)
115 TIGR00215 lpxB lipid-A-disacch 72.5 28 0.00062 31.1 8.8 96 20-127 15-118 (385)
116 PRK13234 nifH nitrogenase redu 72.3 9.7 0.00021 33.0 5.6 38 7-46 3-40 (295)
117 KOG1192 UDP-glucuronosyl and U 71.1 9.4 0.0002 34.3 5.4 41 7-50 5-45 (496)
118 TIGR01281 DPOR_bchL light-inde 70.4 11 0.00023 31.6 5.3 36 9-46 1-36 (268)
119 cd02042 ParA ParA and ParB of 70.1 20 0.00043 25.3 6.0 31 16-46 6-36 (104)
120 cd02032 Bchl_like This family 70.1 11 0.00023 31.6 5.2 37 9-47 1-37 (267)
121 PRK06249 2-dehydropantoate 2-r 69.1 6.4 0.00014 34.0 3.8 35 6-47 3-37 (313)
122 TIGR03018 pepcterm_TyrKin exop 68.9 18 0.00039 29.3 6.2 42 7-48 33-75 (207)
123 cd00561 CobA_CobO_BtuR ATP:cor 68.7 32 0.0007 27.8 7.6 88 22-115 14-109 (159)
124 PRK08305 spoVFB dipicolinate s 68.0 9.5 0.00021 32.1 4.5 40 7-48 4-43 (196)
125 PF13450 NAD_binding_8: NAD(P) 67.7 12 0.00026 25.6 4.3 42 28-70 9-51 (68)
126 cd02040 NifH NifH gene encodes 67.5 14 0.0003 30.6 5.3 37 9-47 2-38 (270)
127 PLN02210 UDP-glucosyl transfer 67.4 84 0.0018 29.2 10.9 42 6-49 6-49 (456)
128 PRK13768 GTPase; Provisional 67.3 57 0.0012 27.7 9.2 39 9-48 2-40 (253)
129 PRK05920 aromatic acid decarbo 67.0 10 0.00022 32.0 4.5 40 7-49 2-41 (204)
130 TIGR03087 stp1 sugar transfera 66.8 45 0.00097 29.2 8.7 28 20-49 14-41 (397)
131 PRK07313 phosphopantothenoylcy 66.8 9.9 0.00022 31.2 4.3 38 8-48 1-38 (182)
132 TIGR03453 partition_RepA plasm 66.8 15 0.00033 32.9 5.8 41 7-47 102-142 (387)
133 PRK10818 cell division inhibit 66.8 16 0.00034 30.5 5.6 40 9-48 2-41 (270)
134 PRK13055 putative lipid kinase 66.5 15 0.00033 32.3 5.7 44 9-52 3-47 (334)
135 COG2120 Uncharacterized protei 66.5 14 0.0003 31.3 5.3 40 4-50 6-50 (237)
136 TIGR01754 flav_RNR ribonucleot 66.0 13 0.00027 28.4 4.5 34 9-43 1-34 (140)
137 TIGR01969 minD_arch cell divis 65.7 15 0.00033 29.7 5.2 36 11-46 2-37 (251)
138 PLN02896 cinnamyl-alcohol dehy 65.6 15 0.00032 31.8 5.3 38 2-45 4-41 (353)
139 PRK00207 sulfur transfer compl 65.5 18 0.00039 28.0 5.3 39 9-47 1-41 (128)
140 PRK01906 tetraacyldisaccharide 65.4 61 0.0013 29.3 9.4 36 12-47 58-95 (338)
141 PF00551 Formyl_trans_N: Formy 65.4 31 0.00067 27.7 6.9 36 9-49 1-38 (181)
142 TIGR01915 npdG NADPH-dependent 65.3 10 0.00022 31.1 4.2 32 9-46 1-32 (219)
143 TIGR00715 precor6x_red precorr 65.3 34 0.00074 29.6 7.5 29 21-51 7-36 (256)
144 PRK05569 flavodoxin; Provision 65.0 17 0.00036 27.4 5.0 38 9-47 2-39 (141)
145 COG0716 FldA Flavodoxins [Ener 64.8 13 0.00028 28.9 4.4 37 8-45 1-37 (151)
146 PF02606 LpxK: Tetraacyldisacc 64.8 8.6 0.00019 34.4 3.8 37 12-48 37-75 (326)
147 COG1663 LpxK Tetraacyldisaccha 64.7 10 0.00022 34.6 4.3 37 12-48 49-87 (336)
148 PRK01372 ddl D-alanine--D-alan 64.6 12 0.00026 31.7 4.5 37 8-47 4-45 (304)
149 PF00201 UDPGT: UDP-glucoronos 64.5 3 6.4E-05 37.8 0.9 28 21-48 10-37 (500)
150 PRK09739 hypothetical protein; 63.8 24 0.00052 28.5 6.0 40 7-47 2-43 (199)
151 TIGR03815 CpaE_hom_Actino heli 63.8 20 0.00043 31.1 5.9 41 7-47 91-131 (322)
152 PLN02173 UDP-glucosyl transfer 63.2 60 0.0013 30.3 9.2 36 12-48 8-43 (449)
153 PRK13054 lipid kinase; Reviewe 62.7 23 0.00049 30.5 6.0 39 8-48 3-41 (300)
154 PRK13232 nifH nitrogenase redu 62.6 17 0.00036 30.7 5.0 34 10-45 3-36 (273)
155 TIGR01968 minD_bact septum sit 62.4 21 0.00045 29.0 5.4 37 10-46 2-38 (261)
156 KOG0780 Signal recognition par 62.3 32 0.00069 32.8 7.1 44 14-57 105-148 (483)
157 PRK06849 hypothetical protein; 61.8 16 0.00034 32.5 4.9 36 7-48 3-38 (389)
158 KOG1838 Alpha/beta hydrolase [ 61.3 17 0.00036 34.1 5.1 39 9-47 125-163 (409)
159 cd06318 PBP1_ABC_sugar_binding 61.2 15 0.00031 29.8 4.3 38 10-47 1-38 (282)
160 PF01656 CbiA: CobQ/CobB/MinD/ 61.1 24 0.00052 27.2 5.3 38 11-49 1-38 (195)
161 TIGR01380 glut_syn glutathione 60.8 11 0.00024 33.0 3.7 39 9-47 1-40 (312)
162 PF00070 Pyr_redox: Pyridine n 60.7 17 0.00037 24.9 4.0 26 25-50 9-34 (80)
163 PLN02695 GDP-D-mannose-3',5'-e 60.4 18 0.00038 32.0 5.0 35 7-47 20-54 (370)
164 PF00154 RecA: recA bacterial 59.6 87 0.0019 28.3 9.3 90 12-118 57-148 (322)
165 PF01738 DLH: Dienelactone hyd 59.2 23 0.00051 28.3 5.1 42 8-51 13-54 (218)
166 PF12038 DUF3524: Domain of un 59.2 47 0.001 27.6 6.9 34 9-46 1-34 (168)
167 PRK07308 flavodoxin; Validated 59.2 23 0.00049 27.1 4.8 28 19-46 11-38 (146)
168 PLN00016 RNA-binding protein; 58.9 14 0.0003 32.5 4.0 39 7-47 51-89 (378)
169 PRK11064 wecC UDP-N-acetyl-D-m 58.9 14 0.00031 33.7 4.3 33 8-47 3-35 (415)
170 PRK06988 putative formyltransf 58.7 35 0.00075 30.1 6.5 36 8-50 2-37 (312)
171 PRK13869 plasmid-partitioning 58.7 25 0.00055 32.1 5.8 39 8-46 120-158 (405)
172 PRK02122 glucosamine-6-phospha 58.7 14 0.00031 36.2 4.4 36 7-49 368-408 (652)
173 cd03466 Nitrogenase_NifN_2 Nit 58.6 70 0.0015 29.3 8.7 35 8-49 300-334 (429)
174 COG0496 SurE Predicted acid ph 58.2 46 0.00099 29.3 7.1 72 27-107 16-89 (252)
175 TIGR00682 lpxK tetraacyldisacc 58.2 15 0.00033 32.7 4.2 34 13-46 31-66 (311)
176 PRK09492 treR trehalose repres 58.0 32 0.00069 28.6 5.9 44 7-50 61-104 (315)
177 PRK05246 glutathione synthetas 57.8 15 0.00033 31.9 4.1 40 8-47 1-41 (316)
178 PRK09004 FMN-binding protein M 57.7 22 0.00048 27.8 4.6 35 10-45 3-37 (146)
179 COG1435 Tdk Thymidine kinase [ 57.4 48 0.001 28.3 6.9 43 8-51 3-45 (201)
180 PRK14619 NAD(P)H-dependent gly 57.1 13 0.00029 32.1 3.6 34 7-47 3-36 (308)
181 PF00258 Flavodoxin_1: Flavodo 56.6 17 0.00037 27.2 3.7 30 20-49 7-36 (143)
182 PLN02204 diacylglycerol kinase 56.5 23 0.00049 34.8 5.4 47 8-55 159-206 (601)
183 PRK13235 nifH nitrogenase redu 56.4 27 0.00059 29.4 5.3 36 9-46 2-37 (274)
184 TIGR00750 lao LAO/AO transport 56.4 1.3E+02 0.0028 26.1 9.6 38 9-47 34-71 (300)
185 PRK12744 short chain dehydroge 56.3 30 0.00065 28.1 5.4 40 1-46 1-40 (257)
186 TIGR00708 cobA cob(I)alamin ad 56.3 1.1E+02 0.0025 25.1 9.2 89 22-114 17-110 (173)
187 PF10727 Rossmann-like: Rossma 56.2 5.8 0.00013 30.9 1.1 38 5-49 7-44 (127)
188 PRK13185 chlL protochlorophyll 56.2 31 0.00067 28.8 5.6 35 10-46 4-38 (270)
189 PF08445 FR47: FR47-like prote 56.1 25 0.00054 25.0 4.3 49 9-57 24-74 (86)
190 KOG3022 Predicted ATPase, nucl 54.6 1E+02 0.0022 27.9 8.8 97 9-109 47-164 (300)
191 cd04950 GT1_like_1 Glycosyltra 54.6 99 0.0022 27.0 8.7 31 100-135 100-130 (373)
192 PRK13230 nitrogenase reductase 54.6 33 0.00071 29.0 5.5 36 9-46 2-37 (279)
193 PLN02778 3,5-epimerase/4-reduc 54.5 24 0.00052 30.2 4.7 38 1-44 1-39 (298)
194 PLN02764 glycosyltransferase f 54.4 1.2E+02 0.0025 28.6 9.5 39 9-49 6-44 (453)
195 PRK01966 ddl D-alanyl-alanine 54.3 22 0.00048 31.1 4.5 39 8-49 3-46 (333)
196 PF03446 NAD_binding_2: NAD bi 54.1 30 0.00065 27.0 4.9 33 8-47 1-33 (163)
197 PF03721 UDPG_MGDP_dh_N: UDP-g 53.5 16 0.00035 29.7 3.3 33 9-48 1-33 (185)
198 PRK07454 short chain dehydroge 53.2 33 0.00072 27.4 5.1 28 20-47 12-39 (241)
199 cd02037 MRP-like MRP (Multiple 52.8 29 0.00063 26.9 4.6 30 17-46 7-36 (169)
200 PLN02410 UDP-glucoronosyl/UDP- 52.7 36 0.00079 31.6 5.9 46 1-49 1-46 (451)
201 PRK12921 2-dehydropantoate 2-r 52.6 24 0.00051 29.8 4.3 31 9-46 1-31 (305)
202 cd02033 BchX Chlorophyllide re 52.5 41 0.0009 30.2 6.0 38 8-46 30-67 (329)
203 PRK11670 antiporter inner memb 52.5 38 0.00083 30.6 5.9 40 7-46 105-144 (369)
204 TIGR02113 coaC_strep phosphopa 52.0 24 0.00053 28.8 4.2 36 10-48 2-37 (177)
205 TIGR02405 trehalos_R_Ecol treh 52.0 42 0.00092 28.1 5.7 43 8-50 59-101 (311)
206 PHA02518 ParA-like protein; Pr 51.9 41 0.00089 26.4 5.4 36 11-47 3-38 (211)
207 TIGR00521 coaBC_dfp phosphopan 51.2 23 0.0005 32.6 4.3 38 8-48 3-40 (390)
208 PRK08105 flavodoxin; Provision 49.7 35 0.00075 26.8 4.6 36 10-46 3-38 (149)
209 PRK00170 azoreductase; Reviewe 49.5 57 0.0012 25.8 5.9 40 8-47 1-44 (201)
210 PRK07577 short chain dehydroge 49.4 37 0.00081 26.8 4.8 27 21-47 10-36 (234)
211 COG3980 spsG Spore coat polysa 48.7 57 0.0012 29.8 6.2 92 9-127 1-98 (318)
212 PRK05723 flavodoxin; Provision 48.6 35 0.00076 27.0 4.5 35 9-45 1-36 (151)
213 PF02635 DrsE: DsrE/DsrF-like 48.4 65 0.0014 22.7 5.5 47 9-56 1-51 (122)
214 PRK04296 thymidine kinase; Pro 48.3 1.4E+02 0.0031 23.9 8.6 36 10-46 3-38 (190)
215 cd06304 PBP1_BmpA_like Peripla 47.8 37 0.00081 27.6 4.7 38 10-47 1-40 (260)
216 PF02702 KdpD: Osmosensitive K 47.6 33 0.00071 29.6 4.4 75 22-115 17-97 (211)
217 TIGR03172 probable selenium-de 47.6 26 0.00057 30.1 3.8 30 19-48 6-35 (232)
218 PRK05868 hypothetical protein; 47.3 25 0.00054 31.1 3.8 35 8-49 1-35 (372)
219 PRK10566 esterase; Provisional 47.2 43 0.00094 26.8 4.9 35 10-47 29-63 (249)
220 TIGR01755 flav_wrbA NAD(P)H:qu 47.2 46 0.00099 27.2 5.1 38 9-47 1-39 (197)
221 TIGR02417 fruct_sucro_rep D-fr 46.9 63 0.0014 27.1 6.0 44 7-50 59-102 (327)
222 TIGR02263 benz_CoA_red_C benzo 46.7 1.5E+02 0.0033 26.8 8.8 123 26-165 15-157 (380)
223 PRK05579 bifunctional phosphop 46.4 34 0.00073 31.5 4.6 39 7-48 5-43 (399)
224 cd01477 vWA_F09G8-8_type VWA F 46.3 40 0.00087 27.6 4.6 41 6-47 129-170 (193)
225 PLN02166 dTDP-glucose 4,6-dehy 46.3 33 0.00072 31.5 4.5 36 5-46 117-152 (436)
226 PRK02645 ppnK inorganic polyph 46.2 73 0.0016 28.1 6.5 39 7-47 2-41 (305)
227 PRK08229 2-dehydropantoate 2-r 46.1 35 0.00076 29.4 4.4 33 8-47 2-34 (341)
228 PRK07523 gluconate 5-dehydroge 46.0 45 0.00098 26.9 4.9 27 20-46 16-42 (255)
229 TIGR02700 flavo_MJ0208 archaeo 46.0 38 0.00082 28.6 4.5 37 10-48 1-39 (234)
230 PRK10422 lipopolysaccharide co 45.8 1.3E+02 0.0029 26.1 8.1 107 7-127 4-115 (352)
231 PRK13705 plasmid-partitioning 45.3 57 0.0012 29.7 5.9 38 8-45 105-142 (388)
232 PRK13233 nifH nitrogenase redu 45.1 54 0.0012 27.5 5.3 34 10-45 4-38 (275)
233 PRK06522 2-dehydropantoate 2-r 44.9 40 0.00087 28.2 4.5 23 25-47 10-32 (304)
234 PLN02534 UDP-glycosyltransfera 44.8 1.7E+02 0.0037 27.7 9.1 37 11-48 10-46 (491)
235 KOG1250 Threonine/serine dehyd 44.7 27 0.00058 33.2 3.7 97 12-125 218-319 (457)
236 cd06315 PBP1_ABC_sugar_binding 44.7 46 0.001 27.3 4.8 38 10-47 2-39 (280)
237 PRK00211 sulfur relay protein 44.7 59 0.0013 24.8 5.0 40 8-47 1-41 (119)
238 PF03808 Glyco_tran_WecB: Glyc 44.6 62 0.0014 25.8 5.4 35 9-49 49-83 (172)
239 PRK09288 purT phosphoribosylgl 43.8 53 0.0011 28.9 5.3 35 7-48 11-45 (395)
240 PRK03094 hypothetical protein; 43.8 17 0.00036 26.8 1.8 25 24-48 7-31 (80)
241 PHA02519 plasmid partition pro 43.7 64 0.0014 29.4 5.9 40 7-46 104-143 (387)
242 cd06310 PBP1_ABC_sugar_binding 43.7 46 0.001 26.7 4.5 37 10-46 1-37 (273)
243 PRK10401 DNA-binding transcrip 43.5 73 0.0016 27.0 6.0 43 8-50 59-101 (346)
244 PRK05717 oxidoreductase; Valid 43.3 52 0.0011 26.6 4.8 26 20-45 16-41 (255)
245 PRK10675 UDP-galactose-4-epime 43.2 44 0.00096 28.2 4.6 25 21-45 7-31 (338)
246 PRK13849 putative crown gall t 43.0 63 0.0014 27.2 5.4 41 10-52 2-42 (231)
247 PRK12367 short chain dehydroge 43.0 45 0.00099 27.7 4.5 26 21-46 21-46 (245)
248 KOG3339 Predicted glycosyltran 42.7 1.1E+02 0.0024 26.3 6.8 101 10-117 40-148 (211)
249 PRK14987 gluconate operon tran 42.7 61 0.0013 27.2 5.3 43 8-50 63-105 (331)
250 PRK14106 murD UDP-N-acetylmura 42.5 50 0.0011 29.6 5.0 33 8-47 5-37 (450)
251 PRK05653 fabG 3-ketoacyl-(acyl 42.4 53 0.0012 25.8 4.6 28 20-47 11-38 (246)
252 PRK00094 gpsA NAD(P)H-dependen 42.4 48 0.001 28.1 4.7 33 8-47 1-33 (325)
253 PLN02992 coniferyl-alcohol glu 42.2 1.7E+02 0.0036 27.7 8.6 37 12-49 8-45 (481)
254 PLN02572 UDP-sulfoquinovose sy 42.2 43 0.00093 30.7 4.6 35 5-45 44-78 (442)
255 PRK06029 3-octaprenyl-4-hydrox 42.0 38 0.00082 28.1 3.8 39 8-49 1-40 (185)
256 cd01124 KaiC KaiC is a circadi 41.9 1.2E+02 0.0026 23.2 6.6 29 22-50 11-39 (187)
257 COG2085 Predicted dinucleotide 41.9 18 0.0004 31.0 2.0 30 20-49 6-35 (211)
258 PRK11303 DNA-binding transcrip 41.8 77 0.0017 26.5 5.8 42 8-49 61-102 (328)
259 PRK10916 ADP-heptose:LPS hepto 41.7 1.1E+02 0.0025 26.4 7.0 97 9-121 1-100 (348)
260 cd02036 MinD Bacterial cell di 41.4 62 0.0013 24.5 4.8 28 19-46 9-36 (179)
261 TIGR01287 nifH nitrogenase iro 41.4 61 0.0013 27.1 5.1 34 11-46 3-36 (275)
262 PF09782 NDUF_B6: NADH:ubiquin 41.3 24 0.00052 29.0 2.5 19 143-161 53-71 (156)
263 PRK13505 formate--tetrahydrofo 41.2 2.5E+02 0.0055 27.6 9.7 84 8-92 54-144 (557)
264 PLN02562 UDP-glycosyltransfera 41.2 27 0.00059 32.3 3.2 38 11-49 8-45 (448)
265 PRK13337 putative lipid kinase 40.9 71 0.0015 27.5 5.6 43 9-52 2-45 (304)
266 cd01542 PBP1_TreR_like Ligand- 40.7 70 0.0015 25.4 5.1 40 11-50 2-41 (259)
267 PRK13695 putative NTPase; Prov 40.6 1.7E+02 0.0037 22.7 8.6 32 9-42 1-32 (174)
268 PRK12823 benD 1,6-dihydroxycyc 40.5 57 0.0012 26.3 4.7 26 20-45 14-39 (260)
269 PRK13931 stationary phase surv 40.4 1.4E+02 0.003 26.1 7.3 69 30-107 22-93 (261)
270 TIGR03100 hydr1_PEP hydrolase, 40.4 84 0.0018 26.3 5.8 40 8-47 26-66 (274)
271 CHL00072 chlL photochlorophyll 40.2 66 0.0014 27.9 5.2 36 9-46 1-36 (290)
272 PRK14618 NAD(P)H-dependent gly 40.2 40 0.00087 29.2 3.9 34 7-47 3-36 (328)
273 PRK07023 short chain dehydroge 40.1 46 0.001 26.7 4.0 26 21-46 8-33 (243)
274 PRK06924 short chain dehydroge 40.0 56 0.0012 26.1 4.5 27 21-47 8-34 (251)
275 COG3349 Uncharacterized conser 39.9 68 0.0015 30.8 5.6 34 9-49 1-34 (485)
276 PF09140 MipZ: ATPase MipZ; I 39.9 61 0.0013 28.8 5.0 37 11-47 2-38 (261)
277 PRK05749 3-deoxy-D-manno-octul 39.7 1.3E+02 0.0027 26.6 7.1 33 9-43 50-82 (425)
278 COG0569 TrkA K+ transport syst 39.7 31 0.00067 28.9 3.0 28 20-47 5-32 (225)
279 PRK12745 3-ketoacyl-(acyl-carr 39.4 55 0.0012 26.2 4.4 28 20-47 8-35 (256)
280 TIGR03101 hydr2_PEP hydrolase, 39.2 84 0.0018 27.2 5.7 38 10-47 27-65 (266)
281 PRK08309 short chain dehydroge 39.0 67 0.0015 25.9 4.8 22 26-47 11-32 (177)
282 KOG2452 Formyltetrahydrofolate 39.0 62 0.0013 31.8 5.2 54 9-70 1-59 (881)
283 PRK12726 flagellar biosynthesi 38.8 2.8E+02 0.006 26.2 9.3 37 9-47 207-243 (407)
284 PF02525 Flavodoxin_2: Flavodo 38.7 63 0.0014 25.7 4.6 39 9-47 1-42 (199)
285 PF01593 Amino_oxidase: Flavin 38.6 53 0.0011 27.4 4.3 45 28-72 4-50 (450)
286 PRK12827 short chain dehydroge 38.4 66 0.0014 25.4 4.6 26 21-46 13-38 (249)
287 PRK06935 2-deoxy-D-gluconate 3 38.4 79 0.0017 25.6 5.2 27 21-47 22-48 (258)
288 cd06293 PBP1_LacI_like_11 Liga 38.3 87 0.0019 25.1 5.4 40 10-49 1-40 (269)
289 PRK06124 gluconate 5-dehydroge 38.3 65 0.0014 25.9 4.6 28 20-47 17-44 (256)
290 cd01536 PBP1_ABC_sugar_binding 38.2 59 0.0013 25.5 4.3 40 10-49 1-40 (267)
291 TIGR00147 lipid kinase, YegS/R 38.1 91 0.002 26.4 5.7 40 9-48 2-42 (293)
292 PRK08226 short chain dehydroge 38.1 65 0.0014 26.1 4.6 27 20-46 12-38 (263)
293 cd06281 PBP1_LacI_like_5 Ligan 38.1 86 0.0019 25.2 5.4 40 11-50 2-41 (269)
294 PRK10985 putative hydrolase; P 38.0 78 0.0017 27.2 5.3 37 10-47 60-96 (324)
295 PLN02427 UDP-apiose/xylose syn 38.0 62 0.0013 28.3 4.8 38 3-46 9-47 (386)
296 PRK09482 flap endonuclease-lik 37.9 54 0.0012 28.7 4.3 33 23-55 108-140 (256)
297 cd06292 PBP1_LacI_like_10 Liga 37.9 92 0.002 25.0 5.5 39 11-49 2-40 (273)
298 PF01380 SIS: SIS domain SIS d 37.8 59 0.0013 23.4 4.0 30 20-49 62-91 (131)
299 COG1192 Soj ATPases involved i 37.6 82 0.0018 26.0 5.2 40 9-48 2-42 (259)
300 cd06312 PBP1_ABC_sugar_binding 37.5 66 0.0014 26.0 4.6 39 10-48 1-40 (271)
301 PRK12826 3-ketoacyl-(acyl-carr 37.5 71 0.0015 25.2 4.7 28 20-47 12-39 (251)
302 PF07015 VirC1: VirC1 protein; 37.3 93 0.002 27.0 5.6 45 9-55 1-45 (231)
303 cd06305 PBP1_methylthioribose_ 37.3 68 0.0015 25.6 4.6 40 10-49 1-40 (273)
304 TIGR02012 tigrfam_recA protein 37.1 92 0.002 28.0 5.8 81 20-115 65-147 (321)
305 PF12697 Abhydrolase_6: Alpha/ 37.0 50 0.0011 24.4 3.5 33 11-47 1-33 (228)
306 PRK05728 DNA polymerase III su 36.9 91 0.002 24.4 5.1 38 8-47 1-38 (142)
307 PF03698 UPF0180: Uncharacteri 36.6 23 0.0005 26.0 1.6 29 24-52 7-35 (80)
308 PF12695 Abhydrolase_5: Alpha/ 36.6 84 0.0018 22.4 4.6 34 11-47 2-35 (145)
309 PRK10653 D-ribose transporter 36.4 90 0.002 25.8 5.3 43 8-50 26-68 (295)
310 cd01965 Nitrogenase_MoFe_beta_ 36.4 2.7E+02 0.0058 25.3 8.8 39 7-52 298-336 (428)
311 PF06941 NT5C: 5' nucleotidase 36.4 44 0.00096 26.6 3.4 31 28-58 79-111 (191)
312 PRK13236 nitrogenase reductase 36.1 85 0.0018 27.1 5.3 36 8-46 5-42 (296)
313 TIGR02016 BchX chlorophyllide 36.0 89 0.0019 27.2 5.4 37 10-48 2-38 (296)
314 cd06285 PBP1_LacI_like_7 Ligan 36.0 1E+02 0.0023 24.6 5.5 40 11-50 2-41 (265)
315 PF10649 DUF2478: Protein of u 36.0 1.1E+02 0.0023 25.1 5.5 34 13-48 4-37 (159)
316 PF12146 Hydrolase_4: Putative 35.7 1.3E+02 0.0029 21.1 5.4 35 9-45 16-50 (79)
317 PRK07109 short chain dehydroge 35.7 81 0.0017 27.4 5.1 27 21-47 15-41 (334)
318 cd06284 PBP1_LacI_like_6 Ligan 35.7 1E+02 0.0022 24.4 5.3 38 11-48 2-39 (267)
319 PRK11780 isoprenoid biosynthes 35.7 82 0.0018 26.5 5.0 40 9-48 2-43 (217)
320 PRK06947 glucose-1-dehydrogena 35.5 65 0.0014 25.7 4.2 26 20-45 8-33 (248)
321 cd04949 GT1_gtfA_like This fam 35.4 52 0.0011 27.9 3.8 56 99-159 97-155 (372)
322 cd06323 PBP1_ribose_binding Pe 35.2 55 0.0012 26.0 3.7 40 11-50 2-41 (268)
323 PRK14620 NAD(P)H-dependent gly 35.2 68 0.0015 27.7 4.5 32 9-47 1-32 (326)
324 cd06280 PBP1_LacI_like_4 Ligan 35.2 99 0.0021 24.8 5.2 40 11-50 2-41 (263)
325 TIGR03026 NDP-sugDHase nucleot 35.1 58 0.0013 29.4 4.2 33 9-48 1-33 (411)
326 PRK02155 ppnK NAD(+)/NADH kina 35.1 1.4E+02 0.003 26.3 6.5 39 7-46 4-42 (291)
327 PRK12829 short chain dehydroge 35.0 75 0.0016 25.5 4.5 26 21-46 18-43 (264)
328 PF01210 NAD_Gly3P_dh_N: NAD-d 35.0 33 0.00071 26.8 2.3 25 25-49 9-33 (157)
329 cd02117 NifH_like This family 34.9 99 0.0021 24.9 5.2 34 11-46 3-36 (212)
330 TIGR02852 spore_dpaB dipicolin 34.8 66 0.0014 26.8 4.2 38 10-49 2-39 (187)
331 COG0562 Glf UDP-galactopyranos 34.6 82 0.0018 29.3 5.1 80 29-116 15-97 (374)
332 cd00983 recA RecA is a bacter 34.5 71 0.0015 28.8 4.7 80 22-115 67-147 (325)
333 PRK08462 biotin carboxylase; V 34.4 82 0.0018 28.5 5.1 38 7-51 3-40 (445)
334 PLN02511 hydrolase 34.3 92 0.002 27.8 5.4 39 9-47 100-138 (388)
335 PRK05993 short chain dehydroge 34.3 88 0.0019 25.9 4.9 26 21-46 11-36 (277)
336 cd00477 FTHFS Formyltetrahydro 34.2 2.7E+02 0.0059 27.1 8.7 84 8-92 37-127 (524)
337 cd06308 PBP1_sensor_kinase_lik 34.1 80 0.0017 25.4 4.5 38 10-47 1-39 (270)
338 TIGR01250 pro_imino_pep_2 prol 34.0 1.2E+02 0.0027 23.5 5.5 38 8-47 25-62 (288)
339 cd01575 PBP1_GntR Ligand-bindi 34.0 1E+02 0.0022 24.4 5.1 39 11-49 2-40 (268)
340 PRK09072 short chain dehydroge 33.9 53 0.0011 26.7 3.5 28 20-47 11-38 (263)
341 TIGR02955 TMAO_TorT TMAO reduc 33.9 83 0.0018 26.2 4.7 38 10-47 1-38 (295)
342 cd01450 vWFA_subfamily_ECM Von 33.9 1E+02 0.0022 22.5 4.8 41 6-47 101-141 (161)
343 PLN02657 3,8-divinyl protochlo 33.9 93 0.002 27.9 5.3 35 7-47 59-93 (390)
344 PRK10423 transcriptional repre 33.7 1.4E+02 0.0029 24.9 6.0 43 7-49 55-97 (327)
345 PRK05557 fabG 3-ketoacyl-(acyl 33.7 51 0.0011 25.9 3.3 29 20-48 11-39 (248)
346 COG0297 GlgA Glycogen synthase 33.4 61 0.0013 30.9 4.2 41 9-49 1-45 (487)
347 PF01488 Shikimate_DH: Shikima 33.3 43 0.00094 25.5 2.7 34 7-47 11-45 (135)
348 PF09318 DUF1975: Domain of un 33.3 94 0.002 24.6 4.8 39 13-51 4-44 (203)
349 cd06317 PBP1_ABC_sugar_binding 33.3 80 0.0017 25.2 4.4 37 11-47 2-39 (275)
350 PRK09273 hypothetical protein; 33.3 76 0.0017 27.3 4.4 40 9-48 1-40 (211)
351 TIGR00639 PurN phosphoribosylg 33.2 2.3E+02 0.0049 23.3 7.1 31 9-44 1-33 (190)
352 PRK12825 fabG 3-ketoacyl-(acyl 33.0 92 0.002 24.3 4.6 25 23-47 15-39 (249)
353 PRK09730 putative NAD(P)-bindi 32.9 77 0.0017 25.0 4.2 26 20-45 7-32 (247)
354 COG0003 ArsA Predicted ATPase 32.8 99 0.0021 27.9 5.3 36 9-47 2-39 (322)
355 PRK14569 D-alanyl-alanine synt 32.4 97 0.0021 26.6 5.0 36 8-46 3-43 (296)
356 PRK05866 short chain dehydroge 32.2 1.1E+02 0.0023 26.0 5.2 27 21-47 47-73 (293)
357 PF02739 5_3_exonuc_N: 5'-3' e 32.2 68 0.0015 25.9 3.8 34 23-56 110-143 (169)
358 PRK13608 diacylglycerol glucos 32.1 1.1E+02 0.0023 27.2 5.4 38 6-44 3-43 (391)
359 PLN02206 UDP-glucuronate decar 32.1 74 0.0016 29.3 4.5 34 6-45 117-150 (442)
360 TIGR00460 fmt methionyl-tRNA f 32.0 85 0.0018 27.6 4.7 35 9-50 1-35 (313)
361 cd03111 CpaE_like This protein 31.9 1.2E+02 0.0025 22.1 4.7 27 19-45 9-36 (106)
362 COG0451 WcaG Nucleoside-diphos 31.8 61 0.0013 26.6 3.6 30 21-50 7-36 (314)
363 COG4195 Phage-related replicat 31.7 57 0.0012 28.0 3.3 60 8-69 36-108 (208)
364 cd06286 PBP1_CcpB_like Ligand- 31.5 1.3E+02 0.0027 23.9 5.3 41 11-51 2-42 (260)
365 PRK10014 DNA-binding transcrip 31.5 1.5E+02 0.0032 24.9 5.9 43 7-49 63-105 (342)
366 TIGR01689 EcbF-BcbF capsule bi 31.5 53 0.0011 25.6 2.9 24 26-49 28-51 (126)
367 cd06300 PBP1_ABC_sugar_binding 31.5 80 0.0017 25.4 4.1 38 10-47 1-43 (272)
368 cd06290 PBP1_LacI_like_9 Ligan 31.4 1.3E+02 0.0028 24.0 5.3 40 11-50 2-41 (265)
369 TIGR03414 ABC_choline_bnd chol 31.3 92 0.002 27.0 4.7 60 10-74 9-68 (290)
370 PRK00652 lpxK tetraacyldisacch 31.3 61 0.0013 29.1 3.7 36 12-47 51-88 (325)
371 TIGR03695 menH_SHCHC 2-succiny 31.3 94 0.002 23.3 4.3 33 10-46 3-35 (251)
372 PF00448 SRP54: SRP54-type pro 31.0 3E+02 0.0064 22.5 8.8 44 10-55 3-46 (196)
373 PRK08177 short chain dehydroge 31.0 92 0.002 24.7 4.4 28 21-48 8-35 (225)
374 PRK05693 short chain dehydroge 30.9 85 0.0018 25.7 4.3 27 21-47 8-34 (274)
375 PRK07102 short chain dehydroge 30.9 62 0.0014 25.9 3.4 28 20-47 7-34 (243)
376 cd03789 GT1_LPS_heptosyltransf 30.9 3.1E+02 0.0067 22.7 7.8 88 10-113 1-91 (279)
377 PRK01438 murD UDP-N-acetylmura 30.8 89 0.0019 28.5 4.7 32 8-46 16-47 (480)
378 TIGR02093 P_ylase glycogen/sta 30.8 1.2E+02 0.0026 30.9 5.9 55 16-72 99-154 (794)
379 PRK11104 hemG protoporphyrinog 30.7 85 0.0018 25.2 4.2 37 9-47 1-37 (177)
380 PRK06138 short chain dehydroge 30.7 59 0.0013 25.9 3.2 28 20-47 11-38 (252)
381 PRK10569 NAD(P)H-dependent FMN 30.7 1.5E+02 0.0032 24.2 5.6 39 9-47 1-40 (191)
382 PRK07236 hypothetical protein; 30.5 60 0.0013 28.4 3.5 36 6-48 4-39 (386)
383 PRK11041 DNA-binding transcrip 30.4 1.7E+02 0.0037 24.0 6.0 42 7-48 34-75 (309)
384 cd06298 PBP1_CcpA_like Ligand- 30.2 1.2E+02 0.0027 24.0 5.0 39 11-49 2-40 (268)
385 PRK04930 glutathione-regulated 30.2 91 0.002 25.8 4.3 35 7-45 4-40 (184)
386 CHL00194 ycf39 Ycf39; Provisio 30.2 1E+02 0.0022 26.3 4.7 27 21-47 7-33 (317)
387 PRK07206 hypothetical protein; 30.2 89 0.0019 27.7 4.5 36 8-50 2-37 (416)
388 PRK15181 Vi polysaccharide bio 30.1 91 0.002 27.0 4.5 35 7-47 14-48 (348)
389 cd00550 ArsA_ATPase Oxyanion-t 29.9 1.2E+02 0.0025 25.7 5.0 36 11-47 2-37 (254)
390 PRK07814 short chain dehydroge 29.7 1.1E+02 0.0024 24.9 4.8 27 21-47 17-43 (263)
391 cd03132 GATase1_catalase Type 29.6 2.4E+02 0.0052 21.0 8.4 38 9-49 2-39 (142)
392 COG0299 PurN Folate-dependent 29.6 52 0.0011 28.1 2.8 43 10-52 103-147 (200)
393 PRK06395 phosphoribosylamine-- 29.5 83 0.0018 29.0 4.3 31 8-45 2-32 (435)
394 PLN02487 zeta-carotene desatur 29.5 1.1E+02 0.0025 29.4 5.4 39 7-52 74-112 (569)
395 PLN02863 UDP-glucoronosyl/UDP- 29.5 1.4E+02 0.003 28.1 5.8 41 7-49 8-48 (477)
396 PRK05647 purN phosphoribosylgl 29.4 2E+02 0.0042 23.9 6.2 35 8-47 1-37 (200)
397 PRK15399 lysine decarboxylase 29.4 72 0.0016 31.9 4.1 43 9-51 1-43 (713)
398 PRK13231 nitrogenase reductase 29.2 71 0.0015 26.6 3.6 35 9-46 3-37 (264)
399 PLN00198 anthocyanidin reducta 29.2 1.2E+02 0.0026 25.9 5.0 27 20-46 15-41 (338)
400 TIGR02195 heptsyl_trn_II lipop 29.0 1.7E+02 0.0037 25.0 6.0 36 10-47 1-38 (334)
401 cd06320 PBP1_allose_binding Pe 29.0 1.1E+02 0.0025 24.5 4.6 38 10-47 1-38 (275)
402 cd05017 SIS_PGI_PMI_1 The memb 29.0 1.3E+02 0.0028 22.1 4.6 27 21-47 53-79 (119)
403 TIGR03385 CoA_CoA_reduc CoA-di 29.0 1.2E+02 0.0027 26.9 5.2 34 8-48 137-170 (427)
404 cd06282 PBP1_GntR_like_2 Ligan 28.9 1.4E+02 0.0031 23.5 5.2 39 11-49 2-40 (266)
405 PRK01355 azoreductase; Reviewe 28.9 1.6E+02 0.0035 23.8 5.5 40 8-47 1-45 (199)
406 TIGR01481 ccpA catabolite cont 28.8 1.6E+02 0.0035 24.5 5.7 43 7-49 58-100 (329)
407 PRK06523 short chain dehydroge 28.7 1.1E+02 0.0024 24.6 4.6 26 21-46 16-41 (260)
408 COG0655 WrbA Multimeric flavod 28.7 1.7E+02 0.0038 23.7 5.7 38 8-47 3-40 (207)
409 PRK06019 phosphoribosylaminoim 28.7 1.3E+02 0.0028 26.7 5.4 24 25-48 12-35 (372)
410 PRK05708 2-dehydropantoate 2-r 28.7 62 0.0013 28.1 3.2 33 8-47 2-34 (305)
411 PRK10867 signal recognition pa 28.7 3.4E+02 0.0073 25.5 8.2 37 10-47 101-138 (433)
412 COG2910 Putative NADH-flavin r 28.6 80 0.0017 27.3 3.7 37 9-51 1-37 (211)
413 TIGR03467 HpnE squalene-associ 28.5 1.1E+02 0.0024 26.4 4.7 57 30-90 2-60 (419)
414 PRK06953 short chain dehydroge 28.4 85 0.0018 24.9 3.8 27 21-47 8-34 (222)
415 PRK10538 malonic semialdehyde 28.2 76 0.0016 25.6 3.5 28 20-47 6-33 (248)
416 PRK13932 stationary phase surv 28.2 1.4E+02 0.003 26.2 5.3 42 7-52 4-45 (257)
417 PRK07233 hypothetical protein; 28.0 90 0.0019 27.1 4.1 25 28-52 12-36 (434)
418 PRK07231 fabG 3-ketoacyl-(acyl 28.0 70 0.0015 25.4 3.2 28 21-48 12-39 (251)
419 PRK09496 trkA potassium transp 27.9 1.2E+02 0.0025 27.1 4.9 30 9-45 1-30 (453)
420 PF04364 DNA_pol3_chi: DNA pol 27.9 1.3E+02 0.0029 23.3 4.7 38 8-47 1-38 (137)
421 COG0429 Predicted hydrolase of 27.9 1.2E+02 0.0026 28.0 5.0 37 10-47 77-113 (345)
422 PRK06327 dihydrolipoamide dehy 27.7 1.3E+02 0.0028 27.6 5.2 34 8-48 183-216 (475)
423 PF10740 DUF2529: Protein of u 27.6 1.7E+02 0.0036 24.5 5.4 44 9-56 83-126 (172)
424 cd06354 PBP1_BmpA_PnrA_like Pe 27.6 1.3E+02 0.0028 24.7 4.8 38 10-47 1-41 (265)
425 cd06274 PBP1_FruR Ligand bindi 27.6 1.6E+02 0.0035 23.4 5.3 40 11-50 2-41 (264)
426 PRK08643 acetoin reductase; Va 27.5 1.1E+02 0.0025 24.5 4.4 26 21-46 9-34 (256)
427 PRK12937 short chain dehydroge 27.4 74 0.0016 25.2 3.3 27 20-46 11-37 (245)
428 cd06302 PBP1_LsrB_Quorum_Sensi 27.4 1.1E+02 0.0024 25.5 4.4 40 10-49 1-41 (298)
429 PRK11889 flhF flagellar biosyn 27.4 2.9E+02 0.0063 26.3 7.5 38 8-47 241-278 (436)
430 PRK11119 proX glycine betaine 27.3 88 0.0019 27.9 4.0 60 8-73 28-89 (331)
431 TIGR01753 flav_short flavodoxi 27.3 1.6E+02 0.0035 21.5 4.9 28 20-47 9-36 (140)
432 PRK10964 ADP-heptose:LPS hepto 27.1 4E+02 0.0086 22.7 8.3 37 9-47 1-39 (322)
433 PRK15400 lysine decarboxylase 26.9 80 0.0017 31.6 4.0 42 9-50 1-42 (714)
434 PLN02670 transferase, transfer 26.9 65 0.0014 30.3 3.2 36 12-48 9-44 (472)
435 PRK00005 fmt methionyl-tRNA fo 26.9 1.2E+02 0.0025 26.6 4.6 35 9-50 1-35 (309)
436 PRK14985 maltodextrin phosphor 26.8 1.4E+02 0.0031 30.4 5.7 55 16-72 108-163 (798)
437 PRK08220 2,3-dihydroxybenzoate 26.8 1.6E+02 0.0035 23.4 5.2 26 21-46 15-40 (252)
438 TIGR02053 MerA mercuric reduct 26.7 1.4E+02 0.003 27.1 5.2 33 8-47 166-198 (463)
439 PF13788 DUF4180: Domain of un 26.7 2.7E+02 0.0059 21.6 6.1 63 6-69 3-77 (113)
440 PRK12770 putative glutamate sy 26.7 1E+02 0.0022 26.8 4.3 36 7-49 17-52 (352)
441 TIGR01830 3oxo_ACP_reduc 3-oxo 26.7 87 0.0019 24.5 3.5 27 21-47 5-31 (239)
442 PRK07041 short chain dehydroge 26.7 84 0.0018 24.8 3.4 27 20-46 3-29 (230)
443 PF08357 SEFIR: SEFIR domain; 26.6 1.2E+02 0.0027 22.9 4.2 33 10-43 2-35 (150)
444 cd06306 PBP1_TorT-like TorT-li 26.6 1.4E+02 0.003 24.3 4.8 38 10-47 1-38 (268)
445 PRK09526 lacI lac repressor; R 26.5 2.3E+02 0.005 23.8 6.2 40 8-47 63-102 (342)
446 PRK10355 xylF D-xylose transpo 26.5 1.3E+02 0.0029 26.0 4.9 43 7-49 24-66 (330)
447 PLN00141 Tic62-NAD(P)-related 26.5 1.2E+02 0.0026 24.7 4.4 35 7-47 16-50 (251)
448 PLN02353 probable UDP-glucose 26.4 47 0.001 31.3 2.2 33 8-47 1-35 (473)
449 TIGR03702 lip_kinase_YegS lipi 26.3 1.5E+02 0.0033 25.3 5.1 28 20-47 9-36 (293)
450 PRK10703 DNA-binding transcrip 26.2 2E+02 0.0043 24.2 5.8 43 7-49 58-100 (341)
451 cd05009 SIS_GlmS_GlmD_2 SIS (S 26.2 1.9E+02 0.0042 21.3 5.2 28 21-48 72-99 (153)
452 cd01540 PBP1_arabinose_binding 26.1 1.1E+02 0.0024 24.8 4.2 38 10-47 1-38 (289)
453 PLN02172 flavin-containing mon 26.0 1.7E+02 0.0036 27.3 5.7 38 7-51 9-46 (461)
454 cd06288 PBP1_sucrose_transcrip 26.0 1.9E+02 0.004 23.0 5.3 39 11-49 2-41 (269)
455 cd05014 SIS_Kpsf KpsF-like pro 26.0 1.1E+02 0.0023 22.3 3.6 30 20-49 56-85 (128)
456 PLN02735 carbamoyl-phosphate s 26.0 1.1E+02 0.0025 31.9 5.0 45 4-48 19-67 (1102)
457 PRK06129 3-hydroxyacyl-CoA deh 25.9 1.3E+02 0.0027 26.0 4.6 33 8-47 2-34 (308)
458 PF02374 ArsA_ATPase: Anion-tr 25.9 1.3E+02 0.0028 26.5 4.7 37 9-48 1-39 (305)
459 PRK07251 pyridine nucleotide-d 25.8 1.5E+02 0.0032 26.7 5.2 33 8-47 157-189 (438)
460 PRK07666 fabG 3-ketoacyl-(acyl 25.8 89 0.0019 24.8 3.5 27 21-47 14-40 (239)
461 cd00032 CASc Caspase, interleu 25.7 1.9E+02 0.004 24.3 5.5 39 8-46 8-53 (243)
462 PRK10490 sensor protein KdpD; 25.7 1.8E+02 0.0039 29.4 6.2 25 22-46 36-60 (895)
463 TIGR01421 gluta_reduc_1 glutat 25.7 1.3E+02 0.0029 27.3 5.0 34 8-48 166-199 (450)
464 PF04127 DFP: DNA / pantothena 25.6 89 0.0019 25.7 3.5 24 25-48 30-53 (185)
465 cd06273 PBP1_GntR_like_1 This 25.6 1.7E+02 0.0038 23.2 5.1 38 11-48 2-39 (268)
466 PRK06719 precorrin-2 dehydroge 25.6 73 0.0016 25.2 2.9 31 8-45 13-43 (157)
467 PRK09841 cryptic autophosphory 25.5 1.7E+02 0.0037 28.8 5.9 39 8-46 530-568 (726)
468 PRK08339 short chain dehydroge 25.4 1.5E+02 0.0033 24.4 4.8 32 10-46 9-40 (263)
469 PLN02240 UDP-glucose 4-epimera 25.4 1.5E+02 0.0032 25.2 4.9 31 9-45 6-36 (352)
470 PRK06079 enoyl-(acyl carrier p 25.2 1.3E+02 0.0027 24.6 4.3 20 26-45 21-40 (252)
471 PLN02650 dihydroflavonol-4-red 25.1 1.5E+02 0.0033 25.4 5.0 27 20-46 11-37 (351)
472 PF00343 Phosphorylase: Carboh 25.1 97 0.0021 31.2 4.1 55 16-72 19-74 (713)
473 cd06301 PBP1_rhizopine_binding 25.1 1.3E+02 0.0028 24.1 4.3 38 10-47 1-39 (272)
474 cd06324 PBP1_ABC_sugar_binding 25.0 1.6E+02 0.0034 24.7 4.9 37 11-47 2-39 (305)
475 PF05586 Ant_C: Anthrax recept 25.0 38 0.00083 25.8 1.1 17 75-91 56-72 (95)
476 cd05013 SIS_RpiR RpiR-like pro 25.0 1.1E+02 0.0024 21.8 3.6 29 21-49 70-98 (139)
477 PF03054 tRNA_Me_trans: tRNA m 25.0 1.6E+02 0.0034 27.0 5.2 34 9-48 1-34 (356)
478 TIGR02201 heptsyl_trn_III lipo 24.8 3.1E+02 0.0067 23.6 6.9 36 10-47 1-38 (344)
479 PRK10727 DNA-binding transcrip 24.8 2.2E+02 0.0047 24.1 5.8 43 7-49 58-100 (343)
480 cd06296 PBP1_CatR_like Ligand- 24.8 1.9E+02 0.0041 23.0 5.2 38 11-48 2-39 (270)
481 PLN02958 diacylglycerol kinase 24.7 2E+02 0.0043 27.1 6.0 46 7-53 110-157 (481)
482 PRK15461 NADH-dependent gamma- 24.6 1.2E+02 0.0027 26.0 4.3 32 9-47 2-33 (296)
483 cd01538 PBP1_ABC_xylose_bindin 24.6 1.2E+02 0.0026 25.0 4.1 40 10-49 1-40 (288)
484 PF00142 Fer4_NifH: 4Fe-4S iro 24.5 2.2E+02 0.0049 25.4 5.9 34 10-45 2-35 (273)
485 cd06283 PBP1_RegR_EndR_KdgR_li 24.5 1.9E+02 0.0041 22.9 5.1 36 11-46 2-37 (267)
486 PLN03015 UDP-glucosyl transfer 24.5 5.5E+02 0.012 24.3 8.9 36 12-48 6-42 (470)
487 TIGR01005 eps_transp_fam exopo 24.4 1.7E+02 0.0037 28.6 5.7 40 8-47 545-584 (754)
488 PRK06416 dihydrolipoamide dehy 24.4 1.7E+02 0.0037 26.4 5.4 33 8-47 172-204 (462)
489 PRK13556 azoreductase; Provisi 24.4 1.9E+02 0.0042 23.4 5.2 40 8-47 1-45 (208)
490 cd06319 PBP1_ABC_sugar_binding 24.3 1.4E+02 0.003 23.9 4.4 38 10-47 1-38 (277)
491 PLN02342 ornithine carbamoyltr 24.2 2.5E+02 0.0055 25.6 6.4 100 7-118 193-311 (348)
492 cd06270 PBP1_GalS_like Ligand 24.2 2.1E+02 0.0045 22.9 5.4 39 11-49 2-40 (268)
493 PRK07208 hypothetical protein; 24.2 3E+02 0.0065 24.8 6.9 71 7-89 3-74 (479)
494 PRK15395 methyl-galactoside AB 24.2 1.7E+02 0.0037 25.1 5.1 41 7-47 23-64 (330)
495 TIGR02690 resist_ArsH arsenica 24.2 2.4E+02 0.0052 24.0 5.9 43 5-47 23-66 (219)
496 PRK12935 acetoacetyl-CoA reduc 24.1 95 0.0021 24.8 3.3 26 20-45 12-37 (247)
497 TIGR01832 kduD 2-deoxy-D-gluco 24.1 93 0.002 24.8 3.3 26 21-46 12-37 (248)
498 PRK03708 ppnK inorganic polyph 24.0 1.6E+02 0.0034 25.8 4.8 36 9-45 1-36 (277)
499 PF07836 DmpG_comm: DmpG-like 24.0 64 0.0014 23.0 2.0 18 20-37 49-66 (66)
500 PRK06130 3-hydroxybutyryl-CoA 23.9 1.5E+02 0.0032 25.4 4.6 32 8-46 4-35 (311)
No 1
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.7e-34 Score=260.69 Aligned_cols=152 Identities=18% Similarity=0.255 Sum_probs=131.0
Q ss_pred ccCCCceEEEEeCCCCCC-chHHHHHHHHHHHHHCCC--eEEEEEeecCCCccccc----ccCCceeE---------EE-
Q 046633 4 RRSSKLNVAIIHPDLGIG-GAERLIVDAAVELVSHGH--NVHVFTAHHDKRRCFEE----TVNGTFPV---------TV- 66 (176)
Q Consensus 4 ~~~~~~kI~~~hpdLgiG-GAERlvvdlA~~l~~~Gh--~V~l~T~~~d~~hcF~E----t~~G~l~V---------~v- 66 (176)
++.++++|+|+|||+|+| |||||+++++.+++++|+ +|+++|++||++| +| +.+ ++.| .+
T Consensus 29 ~~~~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~--~~~l~~~~~-~~~i~~~~~~~~v~l~ 105 (463)
T PLN02949 29 RRSRKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASP--DSLAARARD-RFGVELLSPPKVVHLR 105 (463)
T ss_pred ccCCCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCH--HHHHHHHHh-hcceecCCCceEEEec
Confidence 345678999999999998 999999999999999999 9999999999999 66 554 5666 56
Q ss_pred eCCcccchhhhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEcCCC--ccchheecccCceeeccccccccccchhhc---
Q 046633 67 YGDFLPRHFFYRLHALCAYLRCLFVALCVLLRSSSYDVIIADQVS--VVIPVLKLRSSTKVFMLNIARYMQILELLL--- 141 (176)
Q Consensus 67 ~Gd~lPr~i~gr~~alcA~lR~l~~~~~~~~~~~~~DVvi~Dqvs--~~iP~l~l~~~~~vlf~~~~~YcHFPd~Ll--- 141 (176)
.|+|+|++++|||+.+|+++|++++++..+.+ ..| +|++||++ .++|++|+ .+.||+| ||||||+++
T Consensus 106 ~~~~~~~~~~~~~t~~~~~~~~~~l~~~~~~~-~~p-~v~vDt~~~~~~~pl~~~-~~~~v~~-----yvH~p~~~~dm~ 177 (463)
T PLN02949 106 KRKWIEEETYPRFTMIGQSLGSVYLAWEALCK-FTP-LYFFDTSGYAFTYPLARL-FGCKVVC-----YTHYPTISSDMI 177 (463)
T ss_pred cccccccccCCceehHHHHHHHHHHHHHHHHh-cCC-CEEEeCCCcccHHHHHHh-cCCcEEE-----EEeCCcchHHHH
Confidence 79999999999999999999999999886644 344 56679998 99999994 4789999 999999886
Q ss_pred ----------------ccch--hHHHHHHHHHHHHHHHHHhhh
Q 046633 142 ----------------FEVL--FFLARYYSTVIFRICYWLNTQ 166 (176)
Q Consensus 142 ----------------~~~~--~~lk~lYr~p~d~~Ee~t~~~ 166 (176)
+++. +.+|++|+.++|++|+++++.
T Consensus 178 ~~v~~~~~~~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ 220 (463)
T PLN02949 178 SRVRDRSSMYNNDASIARSFWLSTCKILYYRAFAWMYGLVGRC 220 (463)
T ss_pred HHHhhcccccCccchhhccchhHHHHHHHHHHHHHHHHHHcCC
Confidence 3333 789999999999999998754
No 2
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.98 E-value=2.8e-32 Score=242.57 Aligned_cols=150 Identities=18% Similarity=0.217 Sum_probs=134.1
Q ss_pred eEEEEeCCCCCC-chHHHHHHHHHHHHHC--CCeEEEEEeecCCCc---------ccccccCCcee-EEE--eCCcccch
Q 046633 10 NVAIIHPDLGIG-GAERLIVDAAVELVSH--GHNVHVFTAHHDKRR---------CFEETVNGTFP-VTV--YGDFLPRH 74 (176)
Q Consensus 10 kI~~~hpdLgiG-GAERlvvdlA~~l~~~--Gh~V~l~T~~~d~~h---------cF~Et~~G~l~-V~v--~Gd~lPr~ 74 (176)
-|+|+|||+|+| |||||+++++.+++++ ||+|+|+|+++|.+| ||+|+.+++++ +++ .++|+|++
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEAS 81 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccc
Confidence 489999999998 9999999999999999 899999999999999 99999888888 555 67999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEcC-CCccchheecccCceeeccccccccccc----hhhcc-------
Q 046633 75 FFYRLHALCAYLRCLFVALCVLLRSSSYDVIIADQ-VSVVIPVLKLRSSTKVFMLNIARYMQIL----ELLLF------- 142 (176)
Q Consensus 75 i~gr~~alcA~lR~l~~~~~~~~~~~~~DVvi~Dq-vs~~iP~l~l~~~~~vlf~~~~~YcHFP----d~Ll~------- 142 (176)
.++|++.+|+++++++..++.. .+.+|||||.|| .+.++|+++++.+.|++| ||||| |+++.
T Consensus 82 ~~~r~~~~~~~~~~~~~~~~~~-~~~~pDv~i~~~g~~~~~~~~~~~~~~~~i~-----y~h~P~~~~d~l~~~~~~~~~ 155 (419)
T cd03806 82 TYPRFTLLGQALGSMILGLEAL-LKLVPDIFIDTMGYPFTYPLVRLLGGCPVGA-----YVHYPTISTDMLQKVRSREAS 155 (419)
T ss_pred cCCceeeHHHHHHHHHHHHHHH-HhcCCCEEEEcCCcccHHHHHHHhcCCeEEE-----EecCCcchHHHHHHHhhcccc
Confidence 9999999999999999998744 345799999998 788999999988899999 99999 88843
Q ss_pred --------cch--hHHHHHHHHHHHHHHHHHhh
Q 046633 143 --------EVL--FFLARYYSTVIFRICYWLNT 165 (176)
Q Consensus 143 --------~~~--~~lk~lYr~p~d~~Ee~t~~ 165 (176)
++. +.+|++|+.+++++|+++..
T Consensus 156 ~~~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~ 188 (419)
T cd03806 156 YNNSATIARSPVLSKAKLLYYRLFAFLYGLAGS 188 (419)
T ss_pred ccCccchhccchHHHHHHHHHHHHHHHHHHHhh
Confidence 222 59999999999999998764
No 3
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.96 E-value=8.7e-31 Score=241.93 Aligned_cols=156 Identities=43% Similarity=0.636 Sum_probs=146.3
Q ss_pred CCCceEEEEeCCCCCCchHHHHHHHHHHHHH---------CCCeEEEEEeecCCC------cccccccCCceeEEEeCCc
Q 046633 6 SSKLNVAIIHPDLGIGGAERLIVDAAVELVS---------HGHNVHVFTAHHDKR------RCFEETVNGTFPVTVYGDF 70 (176)
Q Consensus 6 ~~~~kI~~~hpdLgiGGAERlvvdlA~~l~~---------~Gh~V~l~T~~~d~~------hcF~Et~~G~l~V~v~Gd~ 70 (176)
+..+++++.||++|+|||||.++++|.++++ .||+|.++|+|++.. |||.|+.+|++++++.|+|
T Consensus 32 ~~~~~~~~~~~~~~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i~vv~~~ 111 (495)
T KOG0853|consen 32 KPFEHVTFIHPDLGIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPILVVGDW 111 (495)
T ss_pred ccchhheeeccccccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCceEEEEee
Confidence 3457899999999999999999999999999 999999999999999 9999999999999999999
Q ss_pred ccchh--hhhHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEcCCCccchheeccc----Cceeeccccccccccchhhccc
Q 046633 71 LPRHF--FYRLHALCAYLRCLFVALCVLLRS-SSYDVIIADQVSVVIPVLKLRS----STKVFMLNIARYMQILELLLFE 143 (176)
Q Consensus 71 lPr~i--~gr~~alcA~lR~l~~~~~~~~~~-~~~DVvi~Dqvs~~iP~l~l~~----~~~vlf~~~~~YcHFPd~Ll~~ 143 (176)
+|+.+ +++..+.|+++|++++.+.....+ .+.|++|.|++++|+|+++++. ..+++| ||||||+||++
T Consensus 112 lP~~~~~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~~~~~~l~~~~~~p~~~~~i~~-----~~h~~~~lla~ 186 (495)
T KOG0853|consen 112 LPRAMGQFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDFVSACVPLLKQLSGPDVIIKIYF-----YCHFPDSLLAK 186 (495)
T ss_pred cCcccchhhhhhhccceeEEEEeccchhhhhhhhhceeecchHHHHHHHHHHhcCCcccceeEE-----eccchHHHhcc
Confidence 99999 899999999999999988655544 4789999999999999999987 589999 99999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhh
Q 046633 144 VLFFLARYYSTVIFRICYWLNTQ 166 (176)
Q Consensus 144 ~~~~lk~lYr~p~d~~Ee~t~~~ 166 (176)
+.+.+|++||.|+|++|+.+++.
T Consensus 187 r~g~~~~l~~~~l~~~e~e~~~~ 209 (495)
T KOG0853|consen 187 RLGVLKVLYRHALDKIEEETTGL 209 (495)
T ss_pred ccCccceeehhhhhhhhhhhhhc
Confidence 99999999999999999998864
No 4
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.94 E-value=6.6e-26 Score=192.70 Aligned_cols=152 Identities=51% Similarity=0.850 Sum_probs=136.8
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccchhhhhHHHHHHHHHH
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAYLRC 88 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~lR~ 88 (176)
|||+|+||+++.|||||++.++|++|+++||+|+++|...+++++++|+.+|.+++++.+.|+|++.++++..+++++++
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLPRSIFGRFHILCAYLRM 80 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcchhccCCeeEEEEEeEEEcchhhHhHHHHHHHHHH
Confidence 79999999999999999999999999999999999999878888999998887899999889999999999999999999
Q ss_pred HHHHHHH-HHhcCCCcEEEEcCCCccchheecccCceeeccccccccccchhhcccchhHHHHHHHHHHHHHHHHHhh
Q 046633 89 LFVALCV-LLRSSSYDVIIADQVSVVIPVLKLRSSTKVFMLNIARYMQILELLLFEVLFFLARYYSTVIFRICYWLNT 165 (176)
Q Consensus 89 l~~~~~~-~~~~~~~DVvi~Dqvs~~iP~l~l~~~~~vlf~~~~~YcHFPd~Ll~~~~~~lk~lYr~p~d~~Ee~t~~ 165 (176)
++..+.. .....++|||++++.+..+|+++...+.|++| |+|+||.....+.++++++|+.+++++|.+...
T Consensus 81 ~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~i~-----~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 153 (392)
T cd03805 81 LYLALYLLLLPDEKYDVFIVDQVSACVPLLKLFSPSKILF-----YCHFPDQLLAQRGSLLKRLYRKPFDWLEEFTTG 153 (392)
T ss_pred HHHHHHHHhcccCCCCEEEEcCcchHHHHHHHhcCCcEEE-----EEecChHHhcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 8887654 24567899999999999999888766689999 999999998888899999999999999997543
No 5
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.85 E-value=1.1e-08 Score=76.31 Aligned_cols=106 Identities=23% Similarity=0.272 Sum_probs=54.4
Q ss_pred eCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccchhhhhHHHHHHHHHHHHHHHH
Q 046633 15 HPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAYLRCLFVALC 94 (176)
Q Consensus 15 hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~lR~l~~~~~ 94 (176)
+...+.||||+++.++|++|+++||+|++++...+.... ++ .+..... .+.....+........+++..
T Consensus 6 ~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~-~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--- 74 (177)
T PF13439_consen 6 IFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIE-EE------LVKIFVK-IPYPIRKRFLRSFFFMRRLRR--- 74 (177)
T ss_dssp C-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-S-ST------EEEE----TT-SSTSS--HHHHHHHHHHH---
T ss_pred ecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccch-hh------ccceeee-eecccccccchhHHHHHHHHH---
Confidence 344478999999999999999999999999887544332 22 1111111 111111111111222232222
Q ss_pred HHHhcCCCcEEEEcCC-CccchheecccCceeeccccccccccch
Q 046633 95 VLLRSSSYDVIIADQV-SVVIPVLKLRSSTKVFMLNIARYMQILE 138 (176)
Q Consensus 95 ~~~~~~~~DVvi~Dqv-s~~iP~l~l~~~~~vlf~~~~~YcHFPd 138 (176)
.+.+.+||||.+-.. +.....++.. +.|++. .+|.+.
T Consensus 75 -~i~~~~~DiVh~~~~~~~~~~~~~~~-~~~~v~-----~~H~~~ 112 (177)
T PF13439_consen 75 -LIKKEKPDIVHIHGPPAFWIALLACR-KVPIVY-----TIHGPY 112 (177)
T ss_dssp -HHHHHT-SEEECCTTHCCCHHHHHHH-CSCEEE-----EE-HHH
T ss_pred -HHHHcCCCeEEecccchhHHHHHhcc-CCCEEE-----EeCCCc
Confidence 234458999943332 1222223323 778888 999988
No 6
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.74 E-value=4.7e-08 Score=71.70 Aligned_cols=114 Identities=30% Similarity=0.317 Sum_probs=55.9
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccch--hhhhHHHHHHHHHHHHHHHHHHHh
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRH--FFYRLHALCAYLRCLFVALCVLLR 98 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~--i~gr~~alcA~lR~l~~~~~~~~~ 98 (176)
||+|+.+.++|.+|+++||+|+++|...++. ..++..+| +.+.... +|+. .++.... ++.+...+ ...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~----~~~~~~~l--~~~ 70 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPE-DDEEEEDG-VRVHRLP--LPRRPWPLRLLRF----LRRLRRLL--AAR 70 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GG-G-SEEETT-EEEEEE----S-SSSGGGHCCH----HHHHHHHC--HHC
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCc-ccccccCC-ceEEecc--CCccchhhhhHHH----HHHHHHHH--hhh
Confidence 8999999999999999999999999875544 34444555 7766543 3332 1222211 11111111 126
Q ss_pred cCCCcEEEEcCCCccchheec---ccCceeeccccccccccchhhcccchhHHHHHH
Q 046633 99 SSSYDVIIADQVSVVIPVLKL---RSSTKVFMLNIARYMQILELLLFEVLFFLARYY 152 (176)
Q Consensus 99 ~~~~DVvi~Dqvs~~iP~l~l---~~~~~vlf~~~~~YcHFPd~Ll~~~~~~lk~lY 152 (176)
..+||+|.+-. ....++..+ ..+.|+++ -+| +....+.....+++|
T Consensus 71 ~~~~Dvv~~~~-~~~~~~~~~~~~~~~~p~v~-----~~h--~~~~~~~~~~~~~~~ 119 (160)
T PF13579_consen 71 RERPDVVHAHS-PTAGLVAALARRRRGIPLVV-----TVH--GTLFRRGSRWKRRLY 119 (160)
T ss_dssp T---SEEEEEH-HHHHHHHHHHHHHHT--EEE-----E-S--S-T------HHHHHH
T ss_pred ccCCeEEEecc-cchhHHHHHHHHccCCcEEE-----EEC--CCchhhccchhhHHH
Confidence 67899999776 332222222 23678888 777 322222344556666
No 7
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.60 E-value=5.3e-07 Score=76.13 Aligned_cols=111 Identities=20% Similarity=0.143 Sum_probs=65.7
Q ss_pred EeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCC-cccc-hhhhhHHHHHHHHHHHHH
Q 046633 14 IHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGD-FLPR-HFFYRLHALCAYLRCLFV 91 (176)
Q Consensus 14 ~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd-~lPr-~i~gr~~alcA~lR~l~~ 91 (176)
+....|.||+|+.+.++|++|+++||+|+++|..........+. +| +++.+..- .+++ ..+.++...+..++.+..
T Consensus 3 ~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T cd03785 3 LIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPK-AG-IPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQ 80 (350)
T ss_pred EEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccc-cC-CceEEEEecCcCCCChHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999999998764322211121 22 55544321 1222 233334444444554444
Q ss_pred HHHHHHhcCCCcEEEEcCCCccchhee--cccCceeec
Q 046633 92 ALCVLLRSSSYDVIIADQVSVVIPVLK--LRSSTKVFM 127 (176)
Q Consensus 92 ~~~~~~~~~~~DVvi~Dqvs~~iP~l~--l~~~~~vlf 127 (176)
+.. .+++.+||+|+++.-..++|... ...+.|+++
T Consensus 81 ~~~-~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~ 117 (350)
T cd03785 81 ARK-ILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVI 117 (350)
T ss_pred HHH-HHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEE
Confidence 433 34667899999876444554322 334566766
No 8
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.56 E-value=8.7e-07 Score=71.91 Aligned_cols=118 Identities=25% Similarity=0.252 Sum_probs=68.3
Q ss_pred eEEEEeCCCCC--CchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccc------cccCCceeEEEeCCccc--chhhhhH
Q 046633 10 NVAIIHPDLGI--GGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFE------ETVNGTFPVTVYGDFLP--RHFFYRL 79 (176)
Q Consensus 10 kI~~~hpdLgi--GGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~------Et~~G~l~V~v~Gd~lP--r~i~gr~ 79 (176)
||+++-+..+. ||+|+.+.+++++|+++||+|++++.......... +..+| +++........ ...+++.
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 79 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDG-VRVHRVPLPPYKKNGLLKRL 79 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCC-eEEEEEecCCCCccchHHHH
Confidence 68888887755 99999999999999999999999998754333221 23343 55554332111 1122332
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEcCC--Cccchheec--ccCceeeccccccccc
Q 046633 80 HALCAYLRCLFVALCVLLRSSSYDVIIADQV--SVVIPVLKL--RSSTKVFMLNIARYMQ 135 (176)
Q Consensus 80 ~alcA~lR~l~~~~~~~~~~~~~DVvi~Dqv--s~~iP~l~l--~~~~~vlf~~~~~YcH 135 (176)
.............. .....+||+|++... ...++.... ..+.|+++ ++|
T Consensus 80 ~~~~~~~~~~~~~~--~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~h 132 (394)
T cd03794 80 LNYLSFALSALLAL--LKRRRRPDVIIATSPPLLIALAALLLARLKGAPFVL-----EVR 132 (394)
T ss_pred HhhhHHHHHHHHHH--HhcccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEE-----Eeh
Confidence 22222222222111 113678999998862 122332222 23578888 888
No 9
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.56 E-value=4e-07 Score=72.82 Aligned_cols=114 Identities=25% Similarity=0.298 Sum_probs=70.6
Q ss_pred eEEEEeCCCC-CCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccchhhhhHHHHHHHHHH
Q 046633 10 NVAIIHPDLG-IGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAYLRC 88 (176)
Q Consensus 10 kI~~~hpdLg-iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~lR~ 88 (176)
||+++.++++ .||+||.+.+++++|+++||+|++++....+ ..+.+..++ +.+......-.. +. ...+..
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~----~~---~~~~~~ 71 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGE-PPFYELDPK-IKVIDLGDKRDS----KL---LARFKK 71 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCC-CCccccCCc-cceeeccccccc----ch---hccccc
Confidence 6999999998 9999999999999999999999999987554 123343333 444433221110 01 111111
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCccchheecc-cCc-eeeccccccccccchh
Q 046633 89 LFVALCVLLRSSSYDVIIADQVSVVIPVLKLR-SST-KVFMLNIARYMQILEL 139 (176)
Q Consensus 89 l~~~~~~~~~~~~~DVvi~Dqvs~~iP~l~l~-~~~-~vlf~~~~~YcHFPd~ 139 (176)
...... .++..+||+|++.... ...++..+ .+. ++++ ++|....
T Consensus 72 ~~~~~~-~l~~~~~d~i~~~~~~-~~~~~~~~~~~~~~~i~-----~~~~~~~ 117 (348)
T cd03820 72 LRRLRK-LLKNNKPDVVISFLTS-LLTFLASLGLKIVKLIV-----SEHNSPD 117 (348)
T ss_pred hHHHHH-hhcccCCCEEEEcCch-HHHHHHHHhhccccEEE-----ecCCCcc
Confidence 222222 3456799999987754 33344432 233 7777 7886654
No 10
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.55 E-value=4.7e-07 Score=76.68 Aligned_cols=117 Identities=21% Similarity=0.219 Sum_probs=63.5
Q ss_pred eEEEEeCCCC-CCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccchhhhhHHHHHHHHHH
Q 046633 10 NVAIIHPDLG-IGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAYLRC 88 (176)
Q Consensus 10 kI~~~hpdLg-iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~lR~ 88 (176)
||+++|+.+. .|||||++.++|+++.+ +.++|...++.....+.....+++.. ...+|... .+..-+...+..
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~----~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~ 74 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPD----ADIFTLVDDPDKLPRLLRLKKIRTSF-IQKLPFAR-RRYRKYLPLMPL 74 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCC----CCEEEEeecCCccchhhcCCceeech-hhhchhhH-hhHhhhCchhhH
Confidence 7999999995 89999999999998764 66667665544332222111111111 11223221 111111111111
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCccchheecccCceeeccccccccccchhhcc
Q 046633 89 LFVALCVLLRSSSYDVIIADQVSVVIPVLKLRSSTKVFMLNIARYMQILELLLF 142 (176)
Q Consensus 89 l~~~~~~~~~~~~~DVvi~Dqvs~~iP~l~l~~~~~vlf~~~~~YcHFPd~Ll~ 142 (176)
++. .+...+||+|++...+....++ ...+.+.+. |||.|...+.
T Consensus 75 ---~~~-~~~~~~~D~v~~~~~~~~~~~~-~~~~~~~~~-----~~h~~~~~~~ 118 (351)
T cd03804 75 ---AIE-QFDLSGYDLVISSSHAVAKGVI-TRPDQLHIC-----YCHTPMRYAW 118 (351)
T ss_pred ---HHH-hccccCCCEEEEcCcHHhcccc-CCCCCcEEE-----EeCCchHHHh
Confidence 111 2345689999976643333333 224567788 9999865443
No 11
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.52 E-value=1.5e-06 Score=76.09 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=33.3
Q ss_pred ceEEEEe----CCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIH----PDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~h----pdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
|||+++. |+ .||+|+.+.++|++|+++||+|+++|..
T Consensus 1 mkIlii~~~~~P~--~~g~~~~~~~l~~~L~~~G~~V~vit~~ 41 (412)
T PRK10307 1 MKILVYGINYAPE--LTGIGKYTGEMAEWLAARGHEVRVITAP 41 (412)
T ss_pred CeEEEEecCCCCC--ccchhhhHHHHHHHHHHCCCeEEEEecC
Confidence 6888885 66 6899999999999999999999999976
No 12
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.50 E-value=1.4e-06 Score=72.44 Aligned_cols=114 Identities=26% Similarity=0.310 Sum_probs=65.2
Q ss_pred eEEEEeCCC---CCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccchhhhhHHHHHHHH
Q 046633 10 NVAIIHPDL---GIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAYL 86 (176)
Q Consensus 10 kI~~~hpdL---giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~l 86 (176)
||+++.++- ..||+|+.+.++|++|+++||+|++++......+. ++..+| +++.... .++. +........+
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~-~~~~~~-i~~~~~~--~~~~--~~~~~~~~~~ 74 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK-ETEYNG-VRLIHIP--APEI--GGLGTIIYDI 74 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc-ccccCC-ceEEEcC--CCCc--cchhhhHHHH
Confidence 688886642 46999999999999999999999999987544332 233344 6665543 2221 1111111111
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCccchheecc--cCceeeccccccccccch
Q 046633 87 RCLFVALCVLLRSSSYDVIIADQVSVVIPVLKLR--SSTKVFMLNIARYMQILE 138 (176)
Q Consensus 87 R~l~~~~~~~~~~~~~DVvi~Dqvs~~iP~l~l~--~~~~vlf~~~~~YcHFPd 138 (176)
..+++....+.++|++....- ...|+..+. .+.|+++ ..|-.+
T Consensus 75 ---~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~v~-----~~h~~~ 119 (363)
T cd04955 75 ---LAILHALFVKRDIDHVHALGP-AIAPFLPLLRLKGKKVVV-----NMDGLE 119 (363)
T ss_pred ---HHHHHHHhccCCeEEEEecCc-cHHHHHHHHHhcCCCEEE-----EccCcc
Confidence 122221223556777774433 223443322 2678888 777644
No 13
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=98.50 E-value=1.8e-06 Score=74.03 Aligned_cols=114 Identities=18% Similarity=0.101 Sum_probs=67.6
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCccccccc-CCceeEEEeCC-cccc-hhhhhHHHHHH
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETV-NGTFPVTVYGD-FLPR-HFFYRLHALCA 84 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~-~G~l~V~v~Gd-~lPr-~i~gr~~alcA 84 (176)
||||.|+-.. .||+|++.+++|++|+++||+|++++...+... +... .| ++++.... -++. +.+++......
T Consensus 1 ~~~i~i~~~g--~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~--~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (357)
T PRK00726 1 MKKILLAGGG--TGGHVFPALALAEELKKRGWEVLYLGTARGMEA--RLVPKAG-IEFHFIPSGGLRRKGSLANLKAPFK 75 (357)
T ss_pred CcEEEEEcCc--chHhhhHHHHHHHHHHhCCCEEEEEECCCchhh--hccccCC-CcEEEEeccCcCCCChHHHHHHHHH
Confidence 4787776554 689999999999999999999999987532211 1211 24 55554431 0111 12233333333
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEcCCCccchh-e-ecccCceeec
Q 046633 85 YLRCLFVALCVLLRSSSYDVIIADQVSVVIPV-L-KLRSSTKVFM 127 (176)
Q Consensus 85 ~lR~l~~~~~~~~~~~~~DVvi~Dqvs~~iP~-l-~l~~~~~vlf 127 (176)
.++.+..+.+ .+++.+||||++......++. + ++..+.|+++
T Consensus 76 ~~~~~~~~~~-~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~ 119 (357)
T PRK00726 76 LLKGVLQARK-ILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVI 119 (357)
T ss_pred HHHHHHHHHH-HHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEE
Confidence 3444433333 346678999998874334432 2 2345678887
No 14
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.47 E-value=2.4e-06 Score=70.44 Aligned_cols=42 Identities=31% Similarity=0.640 Sum_probs=38.0
Q ss_pred ceEEEEeCCC------CCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 9 LNVAIIHPDL------GIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 9 ~kI~~~hpdL------giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
|||+++-+.+ ..||+|+.+.+++.+|.++||+|++++...++
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~ 48 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSK 48 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 7999998877 89999999999999999999999999976543
No 15
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.46 E-value=2e-06 Score=83.30 Aligned_cols=58 Identities=36% Similarity=0.481 Sum_probs=43.3
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCC--------------eEEEEEeecCCCcc-ccc-c-cCCceeEEEeC
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGH--------------NVHVFTAHHDKRRC-FEE-T-VNGTFPVTVYG 68 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh--------------~V~l~T~~~d~~hc-F~E-t-~~G~l~V~v~G 68 (176)
||++++++++.|||||+++++|++|.+++. +|.+++....++.+ |.+ . ..| ++|.+.+
T Consensus 283 rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~G-v~v~~l~ 357 (694)
T PRK15179 283 PVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAG-IPVSVYS 357 (694)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCC-CeEEEec
Confidence 999999999999999999999999999954 56666554334333 332 2 344 7777764
No 16
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.36 E-value=5.4e-06 Score=74.45 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=38.8
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|||+.+...+|.|||||+++++|+.+.++||+|.++....+
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~ 41 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGK 41 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 79999999999999999999999999999999999988744
No 17
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.34 E-value=3.7e-06 Score=69.66 Aligned_cols=40 Identities=33% Similarity=0.637 Sum_probs=37.1
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
||++++++++.||+|+++.+++++|+++||+|++++...+
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 40 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGE 40 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCC
Confidence 5899999999999999999999999999999999987643
No 18
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.33 E-value=7.2e-06 Score=67.29 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=38.5
Q ss_pred eEEEEeCCCC-CCchHHHHHHHHHHHHHCCCeEEEEEeecCCCc
Q 046633 10 NVAIIHPDLG-IGGAERLIVDAAVELVSHGHNVHVFTAHHDKRR 52 (176)
Q Consensus 10 kI~~~hpdLg-iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~h 52 (176)
||+|+.|... .||+|+.+.+++++|+++||+|++++...+...
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~ 44 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPS 44 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCc
Confidence 7999999987 899999999999999999999999998755443
No 19
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.31 E-value=7e-06 Score=67.34 Aligned_cols=43 Identities=12% Similarity=-0.015 Sum_probs=37.7
Q ss_pred eEEEEeCCCCC---CchHHHHHHHHHHHHHCCCeEEEEEeecCCCc
Q 046633 10 NVAIIHPDLGI---GGAERLIVDAAVELVSHGHNVHVFTAHHDKRR 52 (176)
Q Consensus 10 kI~~~hpdLgi---GGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~h 52 (176)
||+++...+.- ||+|+++.+++++|+++||+|++++...+...
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~ 46 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGL 46 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCcccc
Confidence 68888888865 99999999999999999999999998866544
No 20
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.27 E-value=4.1e-06 Score=67.69 Aligned_cols=89 Identities=22% Similarity=0.186 Sum_probs=57.3
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccchhhhhHHHHHHHHHHH
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAYLRCL 89 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~lR~l 89 (176)
||++++|.++.||+|+.+.+++++|++.||+|.+++.... +.-.++..+..+++...+. +.. ...++.+
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~-~~~~~~~~~~~i~v~~~~~--~~~--------~~~~~~~ 69 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDR-GELGEELEEAGVPVYCLGK--RPG--------RPDPGAL 69 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcc-hhhhHHHHhcCCeEEEEec--ccc--------cccHHHH
Confidence 6999999999999999999999999999999999987532 2222222222366666542 111 0011111
Q ss_pred HHHHHHHHhcCCCcEEEEcCC
Q 046633 90 FVALCVLLRSSSYDVIIADQV 110 (176)
Q Consensus 90 ~~~~~~~~~~~~~DVvi~Dqv 110 (176)
..... .+.+.+||+|++...
T Consensus 70 ~~~~~-~~~~~~~div~~~~~ 89 (365)
T cd03807 70 LRLYK-LIRRLRPDVVHTWMY 89 (365)
T ss_pred HHHHH-HHHhhCCCEEEeccc
Confidence 11211 235678999997653
No 21
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.26 E-value=4.7e-06 Score=66.59 Aligned_cols=43 Identities=28% Similarity=0.483 Sum_probs=39.1
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCc
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRR 52 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~h 52 (176)
||++++++...||+|+.+.+++++|++.||+|.+++...+...
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~ 43 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDY 43 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCcc
Confidence 6999999999999999999999999999999999998755443
No 22
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.23 E-value=5.5e-06 Score=68.96 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=38.3
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
||++++|+++.||+|+.+.+++.+|.++||+|++++.....
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~ 41 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEE 41 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCC
Confidence 69999999999999999999999999999999999987544
No 23
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.21 E-value=7.7e-06 Score=68.76 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=34.0
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
|||+++++. ..||+|+++.++|++|+++||+|+++|...
T Consensus 1 mki~~~~~p-~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 1 MKIGIVCYP-TYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred CceeEEEEe-CCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 688877653 379999999999999999999999999764
No 24
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.20 E-value=2.1e-05 Score=70.10 Aligned_cols=116 Identities=21% Similarity=0.203 Sum_probs=66.4
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccc-cccCCceeEEEeCCcccchhhhhH----HHH
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFE-ETVNGTFPVTVYGDFLPRHFFYRL----HAL 82 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~-Et~~G~l~V~v~Gd~lPr~i~gr~----~al 82 (176)
.+||.++-. ..+|+|.-+.++|++|+++||+|++++.... ....+ +..+| +.++... .++...++. ..+
T Consensus 3 ~~~~~~~~~--~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~-~~~~~~~~~~~-v~~~~~~--~~~~~~~~~~~~~~~~ 76 (415)
T cd03816 3 RKRVCVLVL--GDIGRSPRMQYHALSLAKHGWKVDLVGYLET-PPHDEILSNPN-ITIHPLP--PPPQRLNKLPFLLFAP 76 (415)
T ss_pred ccEEEEEEe--cccCCCHHHHHHHHHHHhcCceEEEEEecCC-CCCHHHhcCCC-EEEEECC--CCccccccchHHHHHH
Confidence 456665544 3466666668999999999999999998643 22222 23344 6666543 232112222 222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEcCCCccchhe------ecccCceeeccccccccc
Q 046633 83 CAYLRCLFVALCVLLRSSSYDVIIADQVSVVIPVL------KLRSSTKVFMLNIARYMQ 135 (176)
Q Consensus 83 cA~lR~l~~~~~~~~~~~~~DVvi~Dqvs~~iP~l------~l~~~~~vlf~~~~~YcH 135 (176)
...+++.+..++.+.+..+||+|++.+- ..+|.+ +...+.|+++ .+|
T Consensus 77 ~~~~~~~~~~~~~l~~~~~~Dvi~~~~~-~~~~~~~~a~~~~~~~~~~~V~-----~~h 129 (415)
T cd03816 77 LKVLWQFFSLLWLLYKLRPADYILIQNP-PSIPTLLIAWLYCLLRRTKLII-----DWH 129 (415)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCC-CCchHHHHHHHHHHHhCCeEEE-----EcC
Confidence 2333333344333445678999996542 333332 3345788988 777
No 25
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.15 E-value=1.7e-05 Score=66.95 Aligned_cols=105 Identities=24% Similarity=0.245 Sum_probs=57.6
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEeecCCCccc-ccccCCceeEEEeCCcccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCF-EETVNGTFPVTVYGDFLPRHFFYRLHALCAYLRCLFVALCVLLR 98 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF-~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~lR~l~~~~~~~~~ 98 (176)
.||+|+.+.++|++|+++||+|+++|...++..+- .+..+| +++...- ..|.... +-..+..+++.....+.-.+.
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 96 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPG-VRVVRVP-AGPAEYL-PKEELWPYLDEFADDLLRFLR 96 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccc-eEEEecc-cccccCC-ChhhcchhHHHHHHHHHHHHH
Confidence 69999999999999999999999999765544332 233443 6655432 1111110 001122222222221111223
Q ss_pred cC--CCcEEEEcCCCccchhe--ecccCceeec
Q 046633 99 SS--SYDVIIADQVSVVIPVL--KLRSSTKVFM 127 (176)
Q Consensus 99 ~~--~~DVvi~Dqvs~~iP~l--~l~~~~~vlf 127 (176)
.. +||+|++.....+.+.. +...+.|+++
T Consensus 97 ~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~ 129 (398)
T cd03800 97 REGGRPDLIHAHYWDSGLVALLLARRLGIPLVH 129 (398)
T ss_pred hcCCCccEEEEecCccchHHHHHHhhcCCceEE
Confidence 33 89999987644443332 2233566666
No 26
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.14 E-value=5.6e-06 Score=68.82 Aligned_cols=34 Identities=38% Similarity=0.511 Sum_probs=31.6
Q ss_pred EeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 14 IHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 14 ~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
++|++..||+|+++.++|++|+++||+|.+++..
T Consensus 3 ~~~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~ 36 (355)
T cd03819 3 VLPALESGGVERGTLELARALVERGHRSLVASAG 36 (355)
T ss_pred cchhhccCcHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 4699999999999999999999999999999864
No 27
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.12 E-value=6.9e-06 Score=68.17 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=38.4
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|||+++++..+.||+|+.+.+++++|.++||+|++++....
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 79999999999999999999999999999999999997643
No 28
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.10 E-value=2.5e-05 Score=63.52 Aligned_cols=45 Identities=33% Similarity=0.441 Sum_probs=36.5
Q ss_pred eEEEEeCCC---CCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCccc
Q 046633 10 NVAIIHPDL---GIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCF 54 (176)
Q Consensus 10 kI~~~hpdL---giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF 54 (176)
||+|+-+.. ..||+|+.+.++|++|+++||+|++++.........
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~ 48 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQD 48 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcc
Confidence 567765444 569999999999999999999999999876655443
No 29
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.06 E-value=1.8e-05 Score=64.19 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=37.3
Q ss_pred eEEEEeCCC--CCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 10 NVAIIHPDL--GIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 10 kI~~~hpdL--giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
||+++.|.+ ..||+|+.+.++|++|+++||+|++++.....
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGG 43 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCC
Confidence 699999999 68999999999999999999999999987443
No 30
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.02 E-value=2.4e-05 Score=66.89 Aligned_cols=86 Identities=16% Similarity=0.161 Sum_probs=56.4
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccc-cc-cCCceeEEEeCCcccchhhhhHHHHHHHH
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFE-ET-VNGTFPVTVYGDFLPRHFFYRLHALCAYL 86 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~-Et-~~G~l~V~v~Gd~lPr~i~gr~~alcA~l 86 (176)
.||+.+++.++.||||++++++|++|.++||++.+++.. +.+. +. +. ..| +++..... -+.+. +..+
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~-~~~~-~~~~~~~~~-i~~~~~~~-~~~~~-------~~~~ 70 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALT-EVSA-FRKRIQRPD-VAFYALHK-QPGKD-------VAVY 70 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcC-CCCh-hHHHHHhcC-ceEEEeCC-CCCCC-------hHHH
Confidence 489999999999999999999999999999999999854 3332 33 22 233 66655431 11111 1222
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcC
Q 046633 87 RCLFVALCVLLRSSSYDVIIADQ 109 (176)
Q Consensus 87 R~l~~~~~~~~~~~~~DVvi~Dq 109 (176)
++++. .+.+.+||||-+-.
T Consensus 71 ~~l~~----~l~~~~~Divh~~~ 89 (374)
T TIGR03088 71 PQLYR----LLRQLRPDIVHTRN 89 (374)
T ss_pred HHHHH----HHHHhCCCEEEEcc
Confidence 33322 23556899998644
No 31
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.01 E-value=2.7e-05 Score=68.08 Aligned_cols=51 Identities=29% Similarity=0.408 Sum_probs=37.0
Q ss_pred EeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEe
Q 046633 14 IHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVY 67 (176)
Q Consensus 14 ~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~ 67 (176)
.+|+ .||+||.+.++|++|+++||+|+++|...+...-.++..+| ++|...
T Consensus 9 ~~p~--~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~-i~v~~~ 59 (398)
T cd03796 9 FYPN--LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNG-LKVYYL 59 (398)
T ss_pred cccc--cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCc-eeEEEe
Confidence 4455 89999999999999999999999999764322212333455 666554
No 32
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.00 E-value=2.6e-05 Score=70.29 Aligned_cols=44 Identities=20% Similarity=0.192 Sum_probs=37.5
Q ss_pred CCCceEEEE-eC--CCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 6 SSKLNVAII-HP--DLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 6 ~~~~kI~~~-hp--dLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
.++|||+++ +| ....||.|+.+.+++++|+++||+|+++|...+
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~ 102 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEG 102 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 578999966 54 347899999999999999999999999997643
No 33
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.91 E-value=3.6e-05 Score=66.30 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=36.3
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
||+++-+.+..||+|+++.+++.+|.+.||+|++++...
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~ 39 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKG 39 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCC
Confidence 689999999999999999999999999999999998753
No 34
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.90 E-value=4.6e-05 Score=58.23 Aligned_cols=82 Identities=22% Similarity=0.235 Sum_probs=57.2
Q ss_pred EEEeCCCC--CCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccchhhhhHHHHHHHHHHH
Q 046633 12 AIIHPDLG--IGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAYLRCL 89 (176)
Q Consensus 12 ~~~hpdLg--iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~lR~l 89 (176)
+++++... .||+++....+|++|+++||+|++++ .+
T Consensus 2 ~~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~v~~------------------------~~------------------ 39 (229)
T cd01635 2 LLVSTPLLPGGGGVELVLLDLAKALARRGHEVEVVA------------------------LL------------------ 39 (229)
T ss_pred eeeccccCCCCCCchhHHHHHHHHHHHcCCeEEEEE------------------------ec------------------
Confidence 44555543 79999999999999999999999998 00
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCccchh---eecccCceeeccccccccccchhh
Q 046633 90 FVALCVLLRSSSYDVIIADQVSVVIPV---LKLRSSTKVFMLNIARYMQILELL 140 (176)
Q Consensus 90 ~~~~~~~~~~~~~DVvi~Dqvs~~iP~---l~l~~~~~vlf~~~~~YcHFPd~L 140 (176)
...+...+.+.+||+|++......... .....+.++++ .+|.+...
T Consensus 40 ~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~i~-----~~h~~~~~ 88 (229)
T cd01635 40 LLLLLRILRGFKPDVVHAHGYYPAPLALLLAARLLGIPLVL-----TVHGVNRS 88 (229)
T ss_pred hHHHHHHHhhcCCCEEEEcCCCcHHHHHHHHHhhCCCCEEE-----EEcCccHh
Confidence 011111234578999998776544432 23345788999 99988764
No 35
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.89 E-value=9.3e-05 Score=61.22 Aligned_cols=42 Identities=29% Similarity=0.334 Sum_probs=34.1
Q ss_pred eEEEEeCCCC--CCchHHHHHHHHHHHHHCCCeEEEEEeecCCC
Q 046633 10 NVAIIHPDLG--IGGAERLIVDAAVELVSHGHNVHVFTAHHDKR 51 (176)
Q Consensus 10 kI~~~hpdLg--iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~ 51 (176)
||+.+.+... .||+|+.+.+++.+|+++||+|++++...+..
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~ 44 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPK 44 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCc
Confidence 4666654432 89999999999999999999999999875543
No 36
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=97.88 E-value=0.00045 Score=55.53 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=35.6
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCC
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKR 51 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~ 51 (176)
||+++.+. .||+++.+.+++++|+++||+|++++...+..
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~ 40 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDEL 40 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCcc
Confidence 68889888 89999999999999999999999999875443
No 37
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.87 E-value=0.00034 Score=55.79 Aligned_cols=117 Identities=22% Similarity=0.212 Sum_probs=66.3
Q ss_pred eEEEEeCCCC-C-CchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccchhhhhHHHHHHHHH
Q 046633 10 NVAIIHPDLG-I-GGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAYLR 87 (176)
Q Consensus 10 kI~~~hpdLg-i-GGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~lR 87 (176)
||+++.+... . ||++..+.+++++|++.||+|.+++...+.......... ......... ..... ......
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~----~~~~~~ 72 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGG-IVVVRPPPL---LRVRR----LLLLLL 72 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecC-cceecCCcc---cccch----hHHHHH
Confidence 5788877763 3 999999999999999999999999987555432222111 011110000 00000 001111
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCccchh--eecccCceeeccccccccccchhh
Q 046633 88 CLFVALCVLLRSSSYDVIIADQVSVVIPV--LKLRSSTKVFMLNIARYMQILELL 140 (176)
Q Consensus 88 ~l~~~~~~~~~~~~~DVvi~Dqvs~~iP~--l~l~~~~~vlf~~~~~YcHFPd~L 140 (176)
..... ...+...+||+|++......... .....+.++++ .+|-+...
T Consensus 73 ~~~~~-~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~-----~~h~~~~~ 121 (374)
T cd03801 73 LALRL-RRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVL-----TVHGLEFG 121 (374)
T ss_pred HHHHH-HHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEE-----Eeccchhh
Confidence 11111 12345568999998876544443 22335678888 77766554
No 38
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.87 E-value=8.4e-05 Score=68.26 Aligned_cols=126 Identities=13% Similarity=0.203 Sum_probs=80.1
Q ss_pred CCceEEEEeCCC-CCCchHHHHHHHHHHHHHCC--CeEEEEEeecCCCc---------ccc-cccCCceeEEEeC--Ccc
Q 046633 7 SKLNVAIIHPDL-GIGGAERLIVDAAVELVSHG--HNVHVFTAHHDKRR---------CFE-ETVNGTFPVTVYG--DFL 71 (176)
Q Consensus 7 ~~~kI~~~hpdL-giGGAERlvvdlA~~l~~~G--h~V~l~T~~~d~~h---------cF~-Et~~G~l~V~v~G--d~l 71 (176)
+.+.++|+||-- .+||.|||.-.+...+|++= +...+||...|-+. -|+ +.++..+....+- .|+
T Consensus 42 ~~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lV 121 (465)
T KOG1387|consen 42 NVKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLV 121 (465)
T ss_pred hceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeee
Confidence 346799999998 45889999999999999964 44455665433211 132 3333333321111 133
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEcCCCc--cchheecccCceeeccccccccccchh
Q 046633 72 PRHFFYRLHALCAYLRCLFVALCVLLRSSSYDVIIADQVSV--VIPVLKLRSSTKVFMLNIARYMQILEL 139 (176)
Q Consensus 72 Pr~i~gr~~alcA~lR~l~~~~~~~~~~~~~DVvi~Dqvs~--~iP~l~l~~~~~vlf~~~~~YcHFPd~ 139 (176)
..+-..+|+-+.-.+--+.+++- ++.+..||++| |.... ..|++|.+.+.||.= |-|||--
T Consensus 122 ea~~~~hfTllgQaigsmIl~~E-ai~r~~Pdi~I-DtMGY~fs~p~~r~l~~~~V~a-----YvHYP~i 184 (465)
T KOG1387|consen 122 EASTWKHFTLLGQAIGSMILAFE-AIIRFPPDIFI-DTMGYPFSYPIFRRLRRIPVVA-----YVHYPTI 184 (465)
T ss_pred ecccccceehHHHHHHHHHHHHH-HHHhCCchheE-ecCCCcchhHHHHHHccCceEE-----EEecccc
Confidence 33334455555555544445544 34567899999 77544 459999889999999 9999953
No 39
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=97.87 E-value=9.2e-05 Score=66.35 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=37.2
Q ss_pred CCCchHHHHHHHHHHHHHCCC--eEEEEEeecCCC-------cccccccCCceeEEEeC
Q 046633 19 GIGGAERLIVDAAVELVSHGH--NVHVFTAHHDKR-------RCFEETVNGTFPVTVYG 68 (176)
Q Consensus 19 giGGAERlvvdlA~~l~~~Gh--~V~l~T~~~d~~-------hcF~Et~~G~l~V~v~G 68 (176)
..||+|+.+.++|.+|+++|| +|+++|...+.+ .-++|..+| ++|++..
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~g-v~v~r~~ 81 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPG-ARIVRLP 81 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCC-cEEEEec
Confidence 369999999999999999997 999999754321 123455566 7777764
No 40
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.86 E-value=0.00027 Score=59.65 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=61.3
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCC-cccc-hhhhhHHHHHHHH
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGD-FLPR-HFFYRLHALCAYL 86 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd-~lPr-~i~gr~~alcA~l 86 (176)
|||.|+-=+ .||.++...++|++|+++||+|+++|........+.+ .+| ++++...- -+.. ...+++......+
T Consensus 1 ~~i~~~~g~--~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~-~~g-~~~~~i~~~~~~~~~~~~~l~~~~~~~ 76 (348)
T TIGR01133 1 KKVVLAAGG--TGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVP-KAG-IEFYFIPVGGLRRKGSFRLIKTPLKLL 76 (348)
T ss_pred CeEEEEeCc--cHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccc-cCC-CceEEEeccCcCCCChHHHHHHHHHHH
Confidence 477766554 6788887789999999999999999853222222222 134 55544321 0111 1222222222223
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCccchhe--ecccCceeec
Q 046633 87 RCLFVALCVLLRSSSYDVIIADQVSVVIPVL--KLRSSTKVFM 127 (176)
Q Consensus 87 R~l~~~~~~~~~~~~~DVvi~Dqvs~~iP~l--~l~~~~~vlf 127 (176)
+.+..+.+ .+++.+||+|++....++++.. +...+.|+++
T Consensus 77 ~~~~~l~~-~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 77 KAVFQARR-ILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFH 118 (348)
T ss_pred HHHHHHHH-HHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEE
Confidence 32322322 3567789999987644444422 2334555554
No 41
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.83 E-value=0.00024 Score=61.95 Aligned_cols=111 Identities=17% Similarity=0.110 Sum_probs=59.0
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCccc-c-hhhhhHHHHHHHHH
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLP-R-HFFYRLHALCAYLR 87 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lP-r-~i~gr~~alcA~lR 87 (176)
||+|+|+++-.- .-.+|.+|+++||+|+++|...+.... . | ++++++-..-+ . ..++...-.-..++
T Consensus 1 ~il~~~~~~p~~-----~~~la~~L~~~G~~v~~~~~~~~~~~~--~---~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (396)
T cd03818 1 RILFVHQNFPGQ-----FRHLAPALAAQGHEVVFLTEPNAAPPP--G---G-VRVVRYRPPRGPTSGTHPYLREFEEAVL 69 (396)
T ss_pred CEEEECCCCchh-----HHHHHHHHHHCCCEEEEEecCCCCCCC--C---C-eeEEEecCCCCCCCCCCccchhHHHHHH
Confidence 699999997422 235999999999999999988654322 1 3 55554321000 0 11111111111122
Q ss_pred HHHHHHHHH----HhcCCCcEEEEcCCCccchhee-cccCceeecccccccccc
Q 046633 88 CLFVALCVL----LRSSSYDVIIADQVSVVIPVLK-LRSSTKVFMLNIARYMQI 136 (176)
Q Consensus 88 ~l~~~~~~~----~~~~~~DVvi~Dqvs~~iP~l~-l~~~~~vlf~~~~~YcHF 136 (176)
+-..++..+ ....+||||++-.....-.+++ .+.+.|++- |||+
T Consensus 70 ~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~-----~~~~ 118 (396)
T cd03818 70 RGQAVARALLALRAKGFRPDVIVAHPGWGETLFLKDVWPDAPLIG-----YFEF 118 (396)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEECCccchhhhHHHhCCCCCEEE-----EEee
Confidence 111111111 2345799999665433233343 445677776 7764
No 42
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=97.75 E-value=0.00024 Score=57.81 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=33.9
Q ss_pred eEEEEeCCC--CCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 10 NVAIIHPDL--GIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 10 kI~~~hpdL--giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
||+++.... -.||+++.+.++|++|+++||+|+++|.....
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPG 43 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 577776554 36899999999999999999999999976443
No 43
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=97.74 E-value=0.00036 Score=56.10 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=31.7
Q ss_pred EEEeCCCC---CCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 12 AIIHPDLG---IGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 12 ~~~hpdLg---iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
+++.+... .||+++.+.+++++|++.||+|++++...+.
T Consensus 2 Lii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 2 LVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred eEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 44444443 6999999999999999999999999987443
No 44
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.66 E-value=0.00018 Score=62.17 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=35.2
Q ss_pred ceEEEEeCCC-CCCchHHHHHHHHHHHHHC--CCeEEEEEee
Q 046633 9 LNVAIIHPDL-GIGGAERLIVDAAVELVSH--GHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdL-giGGAERlvvdlA~~l~~~--Gh~V~l~T~~ 47 (176)
|||+++.+.+ +.||+|+.+.++|++|+++ ||+|.+++..
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~ 42 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRN 42 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecC
Confidence 7999999987 5699999999999999999 8888888864
No 45
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=97.63 E-value=0.0017 Score=53.98 Aligned_cols=132 Identities=23% Similarity=0.263 Sum_probs=80.5
Q ss_pred CceEEEE----eCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccchhhhhHHHHH
Q 046633 8 KLNVAII----HPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALC 83 (176)
Q Consensus 8 ~~kI~~~----hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alc 83 (176)
|+||+++ .|. -.||-|..+=+|+..++++||+|+++...++.... +..-+| +++.... .|. .|-..++.
T Consensus 1 mkkIaIiGtrGIPa-~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~-~~~y~g-v~l~~i~--~~~--~g~~~si~ 73 (185)
T PF09314_consen 1 MKKIAIIGTRGIPA-RYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK-EFEYNG-VRLVYIP--APK--NGSAESII 73 (185)
T ss_pred CceEEEEeCCCCCc-ccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC-CcccCC-eEEEEeC--CCC--CCchHHHH
Confidence 3577777 343 35999999999999999999999999987554332 233355 6655542 332 34333333
Q ss_pred HHHHHHHHHHHHHHh-cCCCcEEEEcCCC---ccchheecccCc--eeeccccccccccchhhcccch---hHHHHHHHH
Q 046633 84 AYLRCLFVALCVLLR-SSSYDVIIADQVS---VVIPVLKLRSST--KVFMLNIARYMQILELLLFEVL---FFLARYYST 154 (176)
Q Consensus 84 A~lR~l~~~~~~~~~-~~~~DVvi~Dqvs---~~iP~l~l~~~~--~vlf~~~~~YcHFPd~Ll~~~~---~~lk~lYr~ 154 (176)
--+..+..++..... +.++||+++=-.+ ...|+++++.+. |++. =||=+-++|. .+.|+++++
T Consensus 74 yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~v--------N~DGlEWkR~KW~~~~k~~lk~ 145 (185)
T PF09314_consen 74 YDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVV--------NMDGLEWKRAKWGRPAKKYLKF 145 (185)
T ss_pred HHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEE--------CCCcchhhhhhcCHHHHHHHHH
Confidence 323333333322111 2468888876665 234888876543 7777 5777777664 456666654
No 46
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=97.58 E-value=0.00053 Score=59.36 Aligned_cols=54 Identities=28% Similarity=0.429 Sum_probs=39.0
Q ss_pred EEeCCCC-CCchHHHHHHHHHHHHHCCCeEEEEEeecCCCc-ccccccCCceeEEEe
Q 046633 13 IIHPDLG-IGGAERLIVDAAVELVSHGHNVHVFTAHHDKRR-CFEETVNGTFPVTVY 67 (176)
Q Consensus 13 ~~hpdLg-iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~h-cF~Et~~G~l~V~v~ 67 (176)
.++|+.+ .||+|+.+.++|++|+++||+|+++|....... ...|..+| +++...
T Consensus 11 ~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~-~~v~~~ 66 (405)
T TIGR03449 11 LQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPG-VRVRNV 66 (405)
T ss_pred cccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCC-cEEEEe
Confidence 3467765 699999999999999999999999997532111 12344555 666654
No 47
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.57 E-value=0.0022 Score=47.64 Aligned_cols=108 Identities=22% Similarity=0.278 Sum_probs=64.1
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccchhhhhHHHHHHHHHHH
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAYLRCL 89 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~lR~l 89 (176)
||+++...- |-.+.++|+.|+++||||+++|...+. . ..+..+| +++.... .|+. + ...+++ +
T Consensus 1 KIl~i~~~~-----~~~~~~~~~~L~~~g~~V~ii~~~~~~-~-~~~~~~~-i~~~~~~--~~~k--~----~~~~~~-~ 63 (139)
T PF13477_consen 1 KILLIGNTP-----STFIYNLAKELKKRGYDVHIITPRNDY-E-KYEIIEG-IKVIRLP--SPRK--S----PLNYIK-Y 63 (139)
T ss_pred CEEEEecCc-----HHHHHHHHHHHHHCCCEEEEEEcCCCc-h-hhhHhCC-eEEEEec--CCCC--c----cHHHHH-H
Confidence 567776653 567899999999999999999995333 1 1222333 6666542 2221 1 233333 2
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCc-cc-hh-eecccC-ceeeccccccccccchhh
Q 046633 90 FVALCVLLRSSSYDVIIADQVSV-VI-PV-LKLRSS-TKVFMLNIARYMQILELL 140 (176)
Q Consensus 90 ~~~~~~~~~~~~~DVvi~Dqvs~-~i-P~-l~l~~~-~~vlf~~~~~YcHFPd~L 140 (176)
... +-.+++.+||||.+-.... ++ +. .+.+.+ .|+++ .-|=.|.+
T Consensus 64 ~~l-~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~-----~~hg~~~~ 112 (139)
T PF13477_consen 64 FRL-RKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIY-----TVHGSDFY 112 (139)
T ss_pred HHH-HHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEE-----EecCCeee
Confidence 222 3345778899998655432 22 21 223445 78888 77766663
No 48
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.53 E-value=0.0007 Score=55.34 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=33.1
Q ss_pred eEEEEeCCC--CCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 10 NVAIIHPDL--GIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 10 kI~~~hpdL--giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
||+++.+.. ..||+|+.+.++|++|+++||+|++++....
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 577766443 2499999999999999999999999998754
No 49
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=97.52 E-value=0.0012 Score=54.54 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=35.1
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
||+++.|.+..| +|+.+.+.+++|.++||+|++++....
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~ 39 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPP 39 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 699999998655 999999999999999999999998743
No 50
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.39 E-value=0.0011 Score=59.03 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=35.6
Q ss_pred eEEEEeCCC----CCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 10 NVAIIHPDL----GIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 10 kI~~~hpdL----giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
||+++-++. -.||.+.++-+|+.+|+++||+|+++|..++.
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~ 45 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGR 45 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcc
Confidence 577877775 46999999999999999999999999987654
No 51
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.23 E-value=0.0019 Score=54.31 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=34.1
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|||+|...+.|.|=+-|.+ .+|++| +||+|++++....
T Consensus 1 MkIl~~v~~~G~GH~~R~~-~la~~L--rg~~v~~~~~~~~ 38 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCL-ALARAL--RGHEVTFITSGPA 38 (318)
T ss_pred CEEEEEeCCCCcCHHHHHH-HHHHHH--ccCceEEEEcCCc
Confidence 7999999999999999998 599999 5999999997743
No 52
>PLN02275 transferase, transferring glycosyl groups
Probab=97.20 E-value=0.004 Score=54.56 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=53.8
Q ss_pred CCCchHHHHHHHHHHHHHCCC-eEEEEEeecCCCcccccccCC-ceeEEEeCCcccchh--hhhHHHHHHHHHH----HH
Q 046633 19 GIGGAERLIVDAAVELVSHGH-NVHVFTAHHDKRRCFEETVNG-TFPVTVYGDFLPRHF--FYRLHALCAYLRC----LF 90 (176)
Q Consensus 19 giGGAERlvvdlA~~l~~~Gh-~V~l~T~~~d~~hcF~Et~~G-~l~V~v~Gd~lPr~i--~gr~~alcA~lR~----l~ 90 (176)
|.+|+|.-+.+.+.+|+++|| +|++++...+. ...|..++ .++|++..- |+.. ..+......++.. +.
T Consensus 13 ~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~--~~~~~~~~~~v~v~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (371)
T PLN02275 13 GDFGRSPRMQYHALSLARQASFQVDVVAYGGSE--PIPALLNHPSIHIHLMVQ--PRLLQRLPRVLYALALLLKVAIQFL 88 (371)
T ss_pred cCCCCCHHHHHHHHHHHhcCCceEEEEEecCCC--CCHHHhcCCcEEEEECCC--cccccccccchHHHHHHHHHHHHHH
Confidence 345555556688889998886 79999865432 23444433 377777642 3221 1121111122222 12
Q ss_pred HHHHHH-HhcCCCcEEEEcCCCccch------heecccCceeec
Q 046633 91 VALCVL-LRSSSYDVIIADQVSVVIP------VLKLRSSTKVFM 127 (176)
Q Consensus 91 ~~~~~~-~~~~~~DVvi~Dqvs~~iP------~l~l~~~~~vlf 127 (176)
.+++.+ .+..+||+|++-+-+ .++ ++++..+.|+++
T Consensus 89 ~~~~~~~~~~~~~DvV~~~~~~-~~~~~~~~~~~~~~~~~p~v~ 131 (371)
T PLN02275 89 MLLWFLCVKIPRPDVFLVQNPP-SVPTLAVVKLACWLRRAKFVI 131 (371)
T ss_pred HHHHHHHhhCCCCCEEEEeCCC-CcHHHHHHHHHHHHhCCCEEE
Confidence 222222 345789999975432 221 122334678887
No 53
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=97.08 E-value=0.0051 Score=53.59 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=31.7
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
|||+|+-.. +.|=....+ .+|.+|+++||+|+++|...
T Consensus 1 mrIl~~~~p-~~GHv~P~l-~la~~L~~rGh~V~~~t~~~ 38 (401)
T cd03784 1 MRVLITTIG-SRGDVQPLV-ALAWALRAAGHEVRVATPPE 38 (401)
T ss_pred CeEEEEeCC-CcchHHHHH-HHHHHHHHCCCeEEEeeCHh
Confidence 688887665 577777776 99999999999999999863
No 54
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.05 E-value=0.0057 Score=52.14 Aligned_cols=106 Identities=17% Similarity=0.179 Sum_probs=58.8
Q ss_pred ceEEEEeCCCC---CCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccchhhhhHHHHHHH
Q 046633 9 LNVAIIHPDLG---IGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAY 85 (176)
Q Consensus 9 ~kI~~~hpdLg---iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~ 85 (176)
|||+++++..- .||+|+.+.++|.+|+++ |+|++++...+. +..+| +++.....| ....+ ....
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~-----~~~~~-~~~~~~~~~--~~~~~----~~~~ 67 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQR-----FDSEG-LTVKGYRPW--SELKE----ANKA 67 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCch-----hcCCC-eEEEEecCh--hhccc----hhhh
Confidence 78999987662 499999999999999997 788887764322 22333 666544322 11111 1112
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCccch-he-ecccCceeec
Q 046633 86 LRCLFVALCVLLRSSSYDVIIADQVSVVIP-VL-KLRSSTKVFM 127 (176)
Q Consensus 86 lR~l~~~~~~~~~~~~~DVvi~Dqvs~~iP-~l-~l~~~~~vlf 127 (176)
++.+...+.......++|+|-+-...+.+. .+ +.+.+.|+++
T Consensus 68 ~~~~~~~~~~~~~~~~~divh~~~~~~~~~~~~~~~~~~~p~v~ 111 (388)
T TIGR02149 68 LGTFSVDLAMANDPVDADVVHSHTWYTFLAGHLAKKLYDKPLVV 111 (388)
T ss_pred hhhhhHHHHHhhCCCCCCeEeecchhhhhHHHHHHHhcCCCEEE
Confidence 222222222222345799988654333222 22 1234567776
No 55
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.90 E-value=0.0072 Score=58.12 Aligned_cols=118 Identities=21% Similarity=0.249 Sum_probs=76.2
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHH----CCC--------eEEEEEee--cC-CCcccc-cccCCceeEEEeCCccc
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVS----HGH--------NVHVFTAH--HD-KRRCFE-ETVNGTFPVTVYGDFLP 72 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~----~Gh--------~V~l~T~~--~d-~~hcF~-Et~~G~l~V~v~Gd~lP 72 (176)
-+++.+--+||.|||||.++++|.++++ .|- .|+++.-. +. .++-|- +.++..+.|....+ +|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 240 (578)
T PRK15490 162 GRLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLEEQVEVLEIAK-IT 240 (578)
T ss_pred cceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHhcCCceEEeec-cc
Confidence 4699999999999999999977666654 443 45555443 22 233343 44555688887755 78
Q ss_pred chhhhhHHHHHHHHHHHHH-----------HHHHHHhcCCCcEEEEcCCCccch--heecccCceeec
Q 046633 73 RHFFYRLHALCAYLRCLFV-----------ALCVLLRSSSYDVIIADQVSVVIP--VLKLRSSTKVFM 127 (176)
Q Consensus 73 r~i~gr~~alcA~lR~l~~-----------~~~~~~~~~~~DVvi~Dqvs~~iP--~l~l~~~~~vlf 127 (176)
++.|...++.-..+|.+.. .+.-++++.+||||-+-|..+++- +.+++++.+++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~lagvpviv 308 (578)
T PRK15490 241 GNLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGACLMIALAALIAGVPRIQ 308 (578)
T ss_pred hhhhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCEEE
Confidence 8888777665554554322 223345788999999888765432 223456677765
No 56
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.56 E-value=0.02 Score=48.08 Aligned_cols=112 Identities=15% Similarity=-0.028 Sum_probs=59.9
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccchhhhhHHHHHHHHHHH
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAYLRCL 89 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~lR~l 89 (176)
||+++.|..-.+ .|+.+.+++++|+ ||+|++++...++.....+...+ +.+. .++..+............
T Consensus 1 ~~~~~~~~~~~~-~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~ 70 (367)
T cd05844 1 RVLIFRPLLLAP-SETFVRNQAEALR--RFRPVYVGGRRLGPAPLGALAVR-LADL------AGGKAGLRLGALRLLTGS 70 (367)
T ss_pred CEEEEeCCCCCC-chHHHHHHHHhcc--cCCcEEEEeeccCCCCCccccee-eeec------ccchhHHHHHHHHhcccc
Confidence 578888886444 9999999999995 88999998875554322232222 2222 111111111111110111
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCccchheec--ccCceeecccccccccc
Q 046633 90 FVALCVLLRSSSYDVIIADQVSVVIPVLKL--RSSTKVFMLNIARYMQI 136 (176)
Q Consensus 90 ~~~~~~~~~~~~~DVvi~Dqvs~~iP~l~l--~~~~~vlf~~~~~YcHF 136 (176)
...++..+++.+||||.+-......+.+.+ ..+.|+++ +.|-
T Consensus 71 ~~~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~-----~~h~ 114 (367)
T cd05844 71 APQLRRLLRRHRPDLVHAHFGFDGVYALPLARRLGVPLVV-----TFHG 114 (367)
T ss_pred ccHHHHHHHhhCCCEEEeccCchHHHHHHHHHHcCCCEEE-----EEeC
Confidence 111122346678999996433344555443 23567777 7773
No 57
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=95.87 E-value=0.034 Score=49.00 Aligned_cols=109 Identities=15% Similarity=0.151 Sum_probs=63.4
Q ss_pred eCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccc---hhhhhHHH--HHHHHHHH
Q 046633 15 HPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPR---HFFYRLHA--LCAYLRCL 89 (176)
Q Consensus 15 hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr---~i~gr~~a--lcA~lR~l 89 (176)
.|.-.+||+|+.+..+|..|++ +|+++|..+. +..-+|+.++.+.|+..+ +++ ..++|... ...+..++
T Consensus 15 ~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 88 (380)
T PRK15484 15 IPPRGAAAVETWIYQVAKRTSI---PNRIACIKNP-GYPEYTKVNDNCDIHYIG--FSRIYKRLFQKWTRLDPLPYSQRI 88 (380)
T ss_pred CCCccccHHHHHHHHhhhhccC---CeeEEEecCC-CCCchhhccCCCceEEEE--eccccchhhhhhhccCchhHHHHH
Confidence 4666789999999999999954 9999999854 422344433336666652 222 22333221 23344444
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCccchhee-cccCceeeccccccccc
Q 046633 90 FVALCVLLRSSSYDVIIADQVSVVIPVLK-LRSSTKVFMLNIARYMQ 135 (176)
Q Consensus 90 ~~~~~~~~~~~~~DVvi~Dqvs~~iP~l~-l~~~~~vlf~~~~~YcH 135 (176)
...+. .....++|||.+-+.......++ .+.++|++. .+|
T Consensus 89 ~~~~~-~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~v~-----~~h 129 (380)
T PRK15484 89 LNIAH-KFTITKDSVIVIHNSMKLYRQIRERAPQAKLVM-----HMH 129 (380)
T ss_pred HHHHH-hcCCCCCcEEEEeCcHHhHHHHHhhCCCCCEEE-----EEe
Confidence 43321 11235688888776544333333 234568887 777
No 58
>PLN02939 transferase, transferring glycosyl groups
Probab=95.79 E-value=0.061 Score=54.66 Aligned_cols=46 Identities=24% Similarity=0.396 Sum_probs=40.2
Q ss_pred ccCCCceEEEEeCCC----CCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 4 RRSSKLNVAIIHPDL----GIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 4 ~~~~~~kI~~~hpdL----giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
.++++|||+|+-+.. -.||-=-++-.|+.+|+++||+|.+++..++
T Consensus 477 ~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 477 GTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 446779999997765 4699999999999999999999999999765
No 59
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=95.70 E-value=0.053 Score=44.12 Aligned_cols=102 Identities=22% Similarity=0.296 Sum_probs=61.8
Q ss_pred CCCCchHHHHHHHHHHH--HHCCCeEEEEEeecCCCcc----cccccCCc-----e-eEEEeCCcccchhhhhHHHHHHH
Q 046633 18 LGIGGAERLIVDAAVEL--VSHGHNVHVFTAHHDKRRC----FEETVNGT-----F-PVTVYGDFLPRHFFYRLHALCAY 85 (176)
Q Consensus 18 LgiGGAERlvvdlA~~l--~~~Gh~V~l~T~~~d~~hc----F~Et~~G~-----l-~V~v~Gd~lPr~i~gr~~alcA~ 85 (176)
+|.||==.-+..++..+ .+..++..++|...+.+.- +++..... + +.+..++ .....++..
T Consensus 5 ~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q-------~~~~~~~~~ 77 (170)
T PF08660_consen 5 LGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQ-------SYLTSIFTT 77 (170)
T ss_pred EcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEech-------hhHhhHHHH
Confidence 47888878888999999 3456667777766433331 22211110 1 1222232 223445666
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCccchhee--ccc------Cceeec
Q 046633 86 LRCLFVALCVLLRSSSYDVIIADQVSVVIPVLK--LRS------STKVFM 127 (176)
Q Consensus 86 lR~l~~~~~~~~~~~~~DVvi~Dqvs~~iP~l~--l~~------~~~vlf 127 (176)
++.+..++++ +.+.+|||||+.--..|+|+.= .+. ++|++|
T Consensus 78 l~~~~~~~~i-l~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIy 126 (170)
T PF08660_consen 78 LRAFLQSLRI-LRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIY 126 (170)
T ss_pred HHHHHHHHHH-HHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEE
Confidence 6666666664 3556799999999999999843 223 678877
No 60
>PRK00654 glgA glycogen synthase; Provisional
Probab=95.67 E-value=0.021 Score=51.82 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=36.3
Q ss_pred ceEEEEeCC----CCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 9 LNVAIIHPD----LGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 9 ~kI~~~hpd----LgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|||+++-.. -..||...++-.++.+|+++||+|.++|..++
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~ 45 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYP 45 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCc
Confidence 689988766 35799999999999999999999999998764
No 61
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=95.56 E-value=0.026 Score=51.01 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=36.9
Q ss_pred ceEEEEeCCC----CCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 9 LNVAIIHPDL----GIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 9 ~kI~~~hpdL----giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|||+++-+.. -.||...++-+++.+|+++||+|.++|..++
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~ 45 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYG 45 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 7899998773 4799999999999999999999999998765
No 62
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=95.53 E-value=0.18 Score=44.76 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=58.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCccccccc--CCceeEEEeCC-cccch-hhhhHHHHHHHHHHHHH
Q 046633 16 PDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETV--NGTFPVTVYGD-FLPRH-FFYRLHALCAYLRCLFV 91 (176)
Q Consensus 16 pdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~--~G~l~V~v~Gd-~lPr~-i~gr~~alcA~lR~l~~ 91 (176)
..=|-||==-=.+.+|.+|+++||+|.++++..+-. .+.. .| ++...... .+++. -...+..++..++.++.
T Consensus 7 ~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e---~~l~~~~g-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (352)
T PRK12446 7 TGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIE---KTIIEKEN-IPYYSISSGKLRRYFDLKNIKDPFLVMKGVMD 82 (352)
T ss_pred EcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccc---cccCcccC-CcEEEEeccCcCCCchHHHHHHHHHHHHHHHH
Confidence 343566666667888999999999999998654321 2221 12 44333321 23332 22345555666666666
Q ss_pred HHHHHHhcCCCcEEEEcCCCccchhe
Q 046633 92 ALCVLLRSSSYDVIIADQVSVVIPVL 117 (176)
Q Consensus 92 ~~~~~~~~~~~DVvi~Dqvs~~iP~l 117 (176)
+++ .+++.+||+|+..-.-+++|..
T Consensus 83 ~~~-i~~~~kPdvvi~~Ggy~s~p~~ 107 (352)
T PRK12446 83 AYV-RIRKLKPDVIFSKGGFVSVPVV 107 (352)
T ss_pred HHH-HHHhcCCCEEEecCchhhHHHH
Confidence 654 3578899999987755555543
No 63
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=95.53 E-value=0.025 Score=49.15 Aligned_cols=41 Identities=10% Similarity=0.068 Sum_probs=33.6
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
++|||+++.-+. +||--.-+-.++++|.++||+|++++...
T Consensus 3 ~~~rili~t~~~-G~GH~~~a~al~~~l~~~g~~~~~~~d~~ 43 (380)
T PRK13609 3 KNPKVLILTAHY-GNGHVQVAKTLEQTFRQKGIKDVIVCDLF 43 (380)
T ss_pred CCCeEEEEEcCC-CchHHHHHHHHHHHHHhcCCCcEEEEEhH
Confidence 567999999885 34888888899999999999977776654
No 64
>PLN02316 synthase/transferase
Probab=95.10 E-value=0.18 Score=51.74 Aligned_cols=45 Identities=16% Similarity=0.371 Sum_probs=39.6
Q ss_pred cCCCceEEEEeCCC----CCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 5 RSSKLNVAIIHPDL----GIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 5 ~~~~~kI~~~hpdL----giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
+.++|||+++-... -.||---++-.|+.+|+++||+|.++|...+
T Consensus 584 ~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 584 KEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred CCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 45679999998665 3699999999999999999999999999765
No 65
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=94.84 E-value=0.093 Score=45.96 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.0
Q ss_pred HHHHHHHHHHCCCeEEEEEee
Q 046633 27 IVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 27 vvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.+.+|++|+++||+|+++|..
T Consensus 12 ~l~lA~~L~~~Gh~V~~~~~~ 32 (392)
T TIGR01426 12 TLGVVEELVARGHRVTYATTE 32 (392)
T ss_pred cHHHHHHHHhCCCeEEEEeCH
Confidence 468999999999999999985
No 66
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=94.58 E-value=0.21 Score=43.04 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=61.2
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCcee-EEE-eCCcccchhhhh---HHHHHH
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFP-VTV-YGDFLPRHFFYR---LHALCA 84 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~-V~v-~Gd~lPr~i~gr---~~alcA 84 (176)
||+|..-+-|.|=+=|.+ .+|.+|++ ||+|.++++.. ...-+.+. | ++ +.. .|.++.. ..|+ ...+.+
T Consensus 1 ril~~~~g~G~GH~~r~~-ala~~L~~-g~ev~~~~~~~-~~~~~~~~--~-~~~~~~~p~~~~~~-~~~~~~~~~~l~~ 73 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSV-AIGEALKN-DYEVSYIASGR-SKNYISKY--G-FKVFETFPGIKLKG-EDGKVNIVKTLRN 73 (321)
T ss_pred CEEEEEeccCccHHHHHH-HHHHHHhC-CCeEEEEEcCC-HHHhhhhh--c-CcceeccCCceEee-cCCcCcHHHHHHh
Confidence 577777777777777776 78888999 99999987553 22211111 1 11 111 1111110 0111 111111
Q ss_pred --H--HHHHHHHHHHHHhcCCCcEEEEcCCCccchheecccCceeeccccccccccch
Q 046633 85 --Y--LRCLFVALCVLLRSSSYDVIIADQVSVVIPVLKLRSSTKVFMLNIARYMQILE 138 (176)
Q Consensus 85 --~--lR~l~~~~~~~~~~~~~DVvi~Dqvs~~iP~l~l~~~~~vlf~~~~~YcHFPd 138 (176)
. .+.+..... .+++.+||+||.|-- ...++.....+-|+++..+-.|.+||.
T Consensus 74 ~~~~~~~~~~~~~~-~l~~~~pDlVi~d~~-~~~~~aA~~~~iP~i~i~~q~~~~~~~ 129 (321)
T TIGR00661 74 KEYSPKKAIRREIN-IIREYNPDLIISDFE-YSTVVAAKLLKIPVICISNQNYTRYPL 129 (321)
T ss_pred hccccHHHHHHHHH-HHHhcCCCEEEECCc-hHHHHHHHhcCCCEEEEecchhhcCCc
Confidence 0 122222222 346678999999943 333444444456666533444555664
No 67
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=93.94 E-value=0.57 Score=43.40 Aligned_cols=110 Identities=18% Similarity=0.241 Sum_probs=64.7
Q ss_pred cCCCceEEEEeCCC-CCCchHHHHHHHHHHHHHC--CCeEEEEEeecCCCcccccccCC----cee-EEEeCC-cc-cch
Q 046633 5 RSSKLNVAIIHPDL-GIGGAERLIVDAAVELVSH--GHNVHVFTAHHDKRRCFEETVNG----TFP-VTVYGD-FL-PRH 74 (176)
Q Consensus 5 ~~~~~kI~~~hpdL-giGGAERlvvdlA~~l~~~--Gh~V~l~T~~~d~~hcF~Et~~G----~l~-V~v~Gd-~l-Pr~ 74 (176)
.++.+||.|.-.|+ |+|=--|-. .+|.+|++. |.+|.++|.-..-+. |+ +..| +++ |+..+| .. -+.
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~-~Ia~aLv~d~~~~~Il~IsG~~~~~~-F~-~~~gVd~V~LPsl~k~~~G~~~~~d 82 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRAL-RIAHALVEDYLGFDILIISGGPPAGG-FP-GPAGVDFVKLPSLIKGDNGEYGLVD 82 (400)
T ss_pred hhccceEEEEehhhccchHHHHHH-HHHHHHhhcccCceEEEEeCCCccCC-CC-CcccCceEecCceEecCCCceeeee
Confidence 34567998765555 888776654 899999998 999999998755443 43 3233 121 222111 00 011
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEcCCCccc-----hheecc
Q 046633 75 FFYRLHALCAYLRCLFVALCVLLRSSSYDVIIADQVSVVI-----PVLKLR 120 (176)
Q Consensus 75 i~gr~~alcA~lR~l~~~~~~~~~~~~~DVvi~Dqvs~~i-----P~l~l~ 120 (176)
.-+...++-+.=+++... .+...+||++|+|..+-++ |.|.++
T Consensus 83 ~~~~l~e~~~~Rs~lil~---t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl 130 (400)
T COG4671 83 LDGDLEETKKLRSQLILS---TAETFKPDIFIVDKFPFGLRFELLPTLEYL 130 (400)
T ss_pred cCCCHHHHHHHHHHHHHH---HHHhcCCCEEEEeccccchhhhhhHHHHHH
Confidence 112233332222222222 4567899999999998775 777755
No 68
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=93.49 E-value=0.69 Score=41.81 Aligned_cols=98 Identities=22% Similarity=0.087 Sum_probs=55.9
Q ss_pred CCCCchHHHHHHHHHHHHHCCCe-EEEEEeecCCCcccccccCCceeEEEeCC-cccchhhh-hHHHHHHHHHHHHHHHH
Q 046633 18 LGIGGAERLIVDAAVELVSHGHN-VHVFTAHHDKRRCFEETVNGTFPVTVYGD-FLPRHFFY-RLHALCAYLRCLFVALC 94 (176)
Q Consensus 18 LgiGGAERlvvdlA~~l~~~Gh~-V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd-~lPr~i~g-r~~alcA~lR~l~~~~~ 94 (176)
-|.||==.....+|++|+++|++ |.+... +.+.-..+..+-.++++...- .+++.... .+...+-.++-+..++.
T Consensus 8 gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~--~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 85 (357)
T COG0707 8 GGTGGHVFPALALAEELAKRGWEQVIVLGT--GDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKGVLQARK 85 (357)
T ss_pred CCCccchhHHHHHHHHHHhhCccEEEEecc--cccceeeeccccCceEEEEecccccccCcHHHHHHHHHHHHHHHHHHH
Confidence 35788888888999999999996 544422 222111222221233333222 24443222 34455556666666644
Q ss_pred HHHhcCCCcEEEEcCCCccchhee
Q 046633 95 VLLRSSSYDVIIADQVSVVIPVLK 118 (176)
Q Consensus 95 ~~~~~~~~DVvi~Dqvs~~iP~l~ 118 (176)
++++.+||+|+..---.++|..-
T Consensus 86 -il~~~kPd~vig~Ggyvs~P~~~ 108 (357)
T COG0707 86 -ILKKLKPDVVIGTGGYVSGPVGI 108 (357)
T ss_pred -HHHHcCCCEEEecCCccccHHHH
Confidence 46788999999866555565543
No 69
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=93.30 E-value=0.35 Score=43.48 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccchhhhhHHHHHHHHHHHHHHHHHHHhcCCCcE
Q 046633 25 RLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAYLRCLFVALCVLLRSSSYDV 104 (176)
Q Consensus 25 RlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~lR~l~~~~~~~~~~~~~DV 104 (176)
++.-+++..|.++||+|.+.+-..+...-.-+. -| ++-.+.|..- .+..+|+. +.+.|.+.+..+ .++.+|||
T Consensus 14 hfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~-yg-~~y~~iG~~g-~~~~~Kl~---~~~~R~~~l~~~-~~~~~pDv 86 (335)
T PF04007_consen 14 HFFKNIIRELEKRGHEVLITARDKDETEELLDL-YG-IDYIVIGKHG-DSLYGKLL---ESIERQYKLLKL-IKKFKPDV 86 (335)
T ss_pred HHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH-cC-CCeEEEcCCC-CCHHHHHH---HHHHHHHHHHHH-HHhhCCCE
Confidence 455688999999999999988764322111111 12 7777777633 45555543 344444444443 35678999
Q ss_pred EEEcCCCccchheecccCceeec
Q 046633 105 IIADQVSVVIPVLKLRSSTKVFM 127 (176)
Q Consensus 105 vi~Dqvs~~iP~l~l~~~~~vlf 127 (176)
++. ..|...|-.....+.|++.
T Consensus 87 ~is-~~s~~a~~va~~lgiP~I~ 108 (335)
T PF04007_consen 87 AIS-FGSPEAARVAFGLGIPSIV 108 (335)
T ss_pred EEe-cCcHHHHHHHHHhCCCeEE
Confidence 993 4455556444444566665
No 70
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=92.51 E-value=1.2 Score=38.61 Aligned_cols=107 Identities=20% Similarity=0.215 Sum_probs=62.4
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC----------------------Ccccc----cccCCce
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK----------------------RRCFE----ETVNGTF 62 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~----------------------~hcF~----Et~~G~l 62 (176)
||+..+.--=|+-|.--++.++|.+|++.|.+|..+=..++. +.++. +..+| +
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g-~ 79 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDG-V 79 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCC-C
Confidence 455555444477799999999999999999999988665320 11111 23333 5
Q ss_pred eEEEeCCcccchhhhhHHHHHHHHHHHHHHHHHHHh-cCCCcEEEEcCCCccchhee
Q 046633 63 PVTVYGDFLPRHFFYRLHALCAYLRCLFVALCVLLR-SSSYDVIIADQVSVVIPVLK 118 (176)
Q Consensus 63 ~V~v~Gd~lPr~i~gr~~alcA~lR~l~~~~~~~~~-~~~~DVvi~Dqvs~~iP~l~ 118 (176)
.+...|+.-.... -.+..+++-...+...+. .+. ..++|+|+.|--+-.-|..+
T Consensus 80 ~~LPfG~l~~~~~-~~~~~l~~~~~~l~~~l~-~l~~~~~~~~iliD~P~g~~~~~~ 134 (243)
T PF06564_consen 80 DFLPFGQLTEAER-EAFEQLAQDPQWLARALA-ALKALGPYDWILIDTPPGPSPYTR 134 (243)
T ss_pred EEEcCCCCCHHHH-HHHHHhhcCHHHHHHHHH-HHhccCCCCEEEEeCCCCCcHHHH
Confidence 5555554211111 223333333333322222 122 46789999998776678777
No 71
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=92.10 E-value=0.65 Score=39.80 Aligned_cols=111 Identities=21% Similarity=0.226 Sum_probs=66.3
Q ss_pred CCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcc--cchhhhhHHHHHHHHHHHHHHH
Q 046633 16 PDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFL--PRHFFYRLHALCAYLRCLFVAL 93 (176)
Q Consensus 16 pdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~l--Pr~i~gr~~alcA~lR~l~~~~ 93 (176)
|..|.|=.-|.. .+|++|.++|++|++++..+.... .+..++...+|...-+.- +.. ...+.
T Consensus 10 ~~iG~GHv~Rcl-~LA~~l~~~g~~v~f~~~~~~~~~-~~~i~~~g~~v~~~~~~~~~~~d-----------~~~~~--- 73 (279)
T TIGR03590 10 SEIGLGHVMRCL-TLARALHAQGAEVAFACKPLPGDL-IDLLLSAGFPVYELPDESSRYDD-----------ALELI--- 73 (279)
T ss_pred ccccccHHHHHH-HHHHHHHHCCCEEEEEeCCCCHHH-HHHHHHcCCeEEEecCCCchhhh-----------HHHHH---
Confidence 566888888887 899999999999999998743321 122222225555543210 000 11111
Q ss_pred HHHHhcCCCcEEEEcCCCccchheecc--cCceeecccccc-ccccchhhccc
Q 046633 94 CVLLRSSSYDVIIADQVSVVIPVLKLR--SSTKVFMLNIAR-YMQILELLLFE 143 (176)
Q Consensus 94 ~~~~~~~~~DVvi~Dqvs~~iP~l~l~--~~~~vlf~~~~~-YcHFPd~Ll~~ 143 (176)
. .+...+||++|+|.....-...+.+ ...+++++.|.. ..|+.|.++.+
T Consensus 74 ~-~l~~~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~~~~D~vin~ 125 (279)
T TIGR03590 74 N-LLEEEKFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRPHDCDLLLDQ 125 (279)
T ss_pred H-HHHhcCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCCcCCCEEEeC
Confidence 1 2345589999999975555555543 234777767653 55667776554
No 72
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=92.00 E-value=1.6 Score=43.70 Aligned_cols=42 Identities=26% Similarity=0.386 Sum_probs=33.2
Q ss_pred CceEEEEeCCC--------C---CCchHHHHHHHHHH--------HHHCCC----eEEEEEeecC
Q 046633 8 KLNVAIIHPDL--------G---IGGAERLIVDAAVE--------LVSHGH----NVHVFTAHHD 49 (176)
Q Consensus 8 ~~kI~~~hpdL--------g---iGGAERlvvdlA~~--------l~~~Gh----~V~l~T~~~d 49 (176)
.|||+++.+.- | .||--..|.++|.+ |+++|| +|.|+|-..+
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~ 319 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIP 319 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCC
Confidence 38999876652 2 59999999999998 478999 7779998654
No 73
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=91.29 E-value=1.3 Score=41.67 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=27.9
Q ss_pred ceEEEEeCCCCCCchHH-HHHHHHHHHHHCCCeEEEEEeec
Q 046633 9 LNVAIIHPDLGIGGAER-LIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAER-lvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
-||..+-|- .|+.=- ++-.+|++|+++||+|++++...
T Consensus 21 ~kIl~~~P~--~~~SH~~~~~~l~~~La~rGH~VTvi~p~~ 59 (507)
T PHA03392 21 ARILAVFPT--PAYSHHSVFKVYVEALAERGHNVTVIKPTL 59 (507)
T ss_pred ccEEEEcCC--CCCcHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 467777676 444433 34568999999999999998764
No 74
>PRK10037 cell division protein; Provisional
Probab=90.27 E-value=4.8 Score=33.54 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=29.1
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
|||.-+--.=|+=|---+.+++|.+|+++|++|.++=.
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~ 38 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDA 38 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 44544444545567788899999999999999999844
No 75
>PLN02846 digalactosyldiacylglycerol synthase
Probab=89.20 E-value=0.69 Score=43.38 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=35.8
Q ss_pred CCceEEEEeCCC--CCCchHHHHHHHHHHHHHCC-CeEEEEEeecC
Q 046633 7 SKLNVAIIHPDL--GIGGAERLIVDAAVELVSHG-HNVHVFTAHHD 49 (176)
Q Consensus 7 ~~~kI~~~hpdL--giGGAERlvvdlA~~l~~~G-h~V~l~T~~~d 49 (176)
++|||+++-..- .++|.-.-+...|..|+++| |+|+++.....
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~ 48 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLS 48 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCc
Confidence 569999986433 48999899999999999999 89999987643
No 76
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=88.83 E-value=0.96 Score=38.16 Aligned_cols=40 Identities=18% Similarity=0.420 Sum_probs=30.1
Q ss_pred eEEEEeCCC----CCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 10 NVAIIHPDL----GIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 10 kI~~~hpdL----giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
||+++-+.. -.||---++-+++++|+++||+|.+++..++
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~ 44 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYG 44 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-TH
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccch
Confidence 466665544 3599999999999999999999999999873
No 77
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=88.52 E-value=0.79 Score=34.90 Aligned_cols=38 Identities=16% Similarity=0.046 Sum_probs=31.7
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|||++...+ .+++.+ +.++...|++.|++|.++.+...
T Consensus 1 k~i~l~vtG--s~~~~~-~~~~l~~L~~~g~~v~vv~S~~A 38 (129)
T PF02441_consen 1 KRILLGVTG--SIAAYK-APDLLRRLKRAGWEVRVVLSPSA 38 (129)
T ss_dssp -EEEEEE-S--SGGGGG-HHHHHHHHHTTTSEEEEEESHHH
T ss_pred CEEEEEEEC--HHHHHH-HHHHHHHHhhCCCEEEEEECCcH
Confidence 588888887 788888 88999999999999999988753
No 78
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=88.51 E-value=1 Score=46.43 Aligned_cols=48 Identities=29% Similarity=0.437 Sum_probs=38.7
Q ss_pred cccCCCceEEEEeC---------CCC----CCchHHHHHHHHHHHHHCC--CeEEEEEeecCC
Q 046633 3 QRRSSKLNVAIIHP---------DLG----IGGAERLIVDAAVELVSHG--HNVHVFTAHHDK 50 (176)
Q Consensus 3 ~~~~~~~kI~~~hp---------dLg----iGGAERlvvdlA~~l~~~G--h~V~l~T~~~d~ 50 (176)
+++.++|.|+++.+ .|| .||-=..|+++|.+|+++| |+|.++|-..++
T Consensus 164 ~~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~ 226 (1050)
T TIGR02468 164 QQKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSS 226 (1050)
T ss_pred hcccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCc
Confidence 45567789998753 234 4889999999999999999 999999987653
No 79
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=88.45 E-value=7.4 Score=34.85 Aligned_cols=41 Identities=10% Similarity=0.288 Sum_probs=35.8
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
|||+++.+..- .=.|--+.+=..+|.++||+|.+++.++..
T Consensus 1 m~ia~~~~~~P-~~setFi~~ei~~l~~~G~~v~~~s~~~~~ 41 (406)
T PRK15427 1 MKVGFFLLKFP-LSSETFVLNQITAFIDMGFEVEIVALQKGD 41 (406)
T ss_pred CeEEEEeccCC-ccchhhHHHHHHHHHHcCceEEEEEccCCC
Confidence 68999988864 667999999999999999999999997643
No 80
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=88.30 E-value=0.44 Score=35.32 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=23.0
Q ss_pred CCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 18 LGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 18 LgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.|.+|==.=.+.+|.+|+++||||.+.|..
T Consensus 6 ~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 6 GGTRGHVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp ESSHHHHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred cCChhHHHHHHHHHHHHhccCCeEEEeecc
Confidence 345565566789999999999999988864
No 81
>PRK14099 glycogen synthase; Provisional
Probab=87.76 E-value=1.3 Score=41.17 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=37.5
Q ss_pred CCceEEEEeCCC----CCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 7 SKLNVAIIHPDL----GIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 7 ~~~kI~~~hpdL----giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
++|||+|+-... -.||-=-++-.|..+|+++||+|.+++...+
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~ 48 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYP 48 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 469999987665 5699999999999999999999999998654
No 82
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=87.32 E-value=3.6 Score=34.28 Aligned_cols=90 Identities=22% Similarity=0.223 Sum_probs=47.2
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccc-cccCCceeEEEeC------CcccchhhhhHHH
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFE-ETVNGTFPVTVYG------DFLPRHFFYRLHA 81 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~-Et~~G~l~V~v~G------d~lPr~i~gr~~a 81 (176)
|||++-=-| |+ ...=+-.|+++|++.||+|.++....+.+-+=. =+....+++.... +.---.+-|
T Consensus 1 M~ILlTNDD-Gi--~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~G---- 73 (196)
T PF01975_consen 1 MRILLTNDD-GI--DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSG---- 73 (196)
T ss_dssp SEEEEE-SS--T--TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS----
T ss_pred CeEEEEcCC-CC--CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcC----
Confidence 577665555 55 233455889999888999999999876544311 1223346553321 100001112
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEE
Q 046633 82 LCAYLRCLFVALCVLLRSSSYDVIIA 107 (176)
Q Consensus 82 lcA~lR~l~~~~~~~~~~~~~DVvi~ 107 (176)
.-.-++..++..++.+.+||+||.
T Consensus 74 --TPaDcv~~al~~~~~~~~pDLViS 97 (196)
T PF01975_consen 74 --TPADCVKLALDGLLPDKKPDLVIS 97 (196)
T ss_dssp ---HHHHHHHHHHCTSTTSS-SEEEE
T ss_pred --cHHHHHHHHHHhhhccCCCCEEEE
Confidence 223344555554444556999993
No 83
>PRK14098 glycogen synthase; Provisional
Probab=86.90 E-value=1.5 Score=40.76 Aligned_cols=42 Identities=7% Similarity=0.219 Sum_probs=37.3
Q ss_pred CCceEEEEeCCC----CCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 7 SKLNVAIIHPDL----GIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 7 ~~~kI~~~hpdL----giGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
++|||+|+-... -.||-=-|+-.|..+|+++||+|.+++...
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 459999998776 459999999999999999999999999865
No 84
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=84.41 E-value=1.4 Score=40.16 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=33.1
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+|||+|+-..- .|=.++.+ -++++|+++||+|+++|..
T Consensus 1 ~mkil~~~~~~-~Ghv~p~~-aL~~eL~~~gheV~~~~~~ 38 (406)
T COG1819 1 RMKILFVVCGA-YGHVNPCL-ALGKELRRRGHEVVFASTG 38 (406)
T ss_pred CceEEEEeccc-cccccchH-HHHHHHHhcCCeEEEEeCH
Confidence 57999877776 89999987 7999999999999999865
No 85
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.54 E-value=14 Score=34.79 Aligned_cols=105 Identities=24% Similarity=0.318 Sum_probs=60.4
Q ss_pred ccCCCce-EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccC-CceeEEEeCC-----cccchhh
Q 046633 4 RRSSKLN-VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVN-GTFPVTVYGD-----FLPRHFF 76 (176)
Q Consensus 4 ~~~~~~k-I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~-G~l~V~v~Gd-----~lPr~i~ 76 (176)
+++++++ |+++.-| +|-.-|.- .=|..|++.|++|.++.--++..+ +|.-+ -.++|+-.-+ -.|+-++
T Consensus 8 ~~~~k~ra~vvVLGD--vGRSPRMq-YHA~Sla~~gf~VdliGy~~s~p~--e~l~~hprI~ih~m~~l~~~~~~p~~~~ 82 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLGD--VGRSPRMQ-YHALSLAKLGFQVDLIGYVESIPL--EELLNHPRIRIHGMPNLPFLQGGPRVLF 82 (444)
T ss_pred cccccceEEEEEecc--cCCChHHH-HHHHHHHHcCCeEEEEEecCCCCh--HHHhcCCceEEEeCCCCcccCCCchhhh
Confidence 3444445 5567777 67777765 778999999999999987655333 33332 1344443322 1233333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEcCCCccchhee
Q 046633 77 YRLHALCAYLRCLFVALCVLLRSSSYDVIIADQVSVVIPVLK 118 (176)
Q Consensus 77 gr~~alcA~lR~l~~~~~~~~~~~~~DVvi~Dqvs~~iP~l~ 118 (176)
.-+.+++-.+- +++.++....+|.+++ |-+-+||.+-
T Consensus 83 l~lKvf~Qfl~----Ll~aL~~~~~~~~ilv-QNPP~iPtli 119 (444)
T KOG2941|consen 83 LPLKVFWQFLS----LLWALFVLRPPDIILV-QNPPSIPTLI 119 (444)
T ss_pred hHHHHHHHHHH----HHHHHHhccCCcEEEE-eCCCCCchHH
Confidence 32333332222 2222334567899885 5578999875
No 86
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=83.20 E-value=7.1 Score=33.81 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=33.9
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
|+||.++.-.=|+-|.--+..++|.+++++|.+|.++-..
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D 40 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTD 40 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3578888877788889999999999999999999887553
No 87
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=82.67 E-value=3.8 Score=32.82 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=32.0
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+|+..+...-|.-|.--+++++|.+++++|++|.++-..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 666666666566788999999999999999999988543
No 88
>PLN03007 UDP-glucosyltransferase family protein
Probab=82.16 E-value=8.5 Score=35.75 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=28.2
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
.+| ++.|-.+.|= =-=++++|+.|+++|++|+++|+..
T Consensus 6 ~hV-vlvp~pa~GH-i~P~L~LAk~L~~rG~~VT~vtt~~ 43 (482)
T PLN03007 6 LHI-LFFPFMAHGH-MIPTLDMAKLFSSRGAKSTILTTPL 43 (482)
T ss_pred cEE-EEECCCcccc-HHHHHHHHHHHHhCCCEEEEEECCC
Confidence 344 4556666653 3345799999999999999999864
No 89
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=81.88 E-value=2.2 Score=32.43 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=35.8
Q ss_pred ceEEEEeCCC-CCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccc
Q 046633 9 LNVAIIHPDL-GIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFE 55 (176)
Q Consensus 9 ~kI~~~hpdL-giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~ 55 (176)
|||+++.-+. -.|-.++++-.++..+.+.|++|.++-.+..+.+|+.
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~ 48 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCD 48 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHH
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcc
Confidence 7999999998 4577888888888888889999999976643344443
No 90
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=81.42 E-value=19 Score=31.04 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=33.2
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
.+++..+-...|.=|--.+.+++|.+++++|.+|-++=.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDa 94 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDA 94 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 567788888877778888999999999999999988754
No 91
>PLN02208 glycosyltransferase family protein
Probab=81.27 E-value=12 Score=34.69 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=28.2
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 12 AIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 12 ~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+++.|-.+.|=. -=++++|+.|+++|++|+++|+..
T Consensus 7 vv~~P~paqGHi-~P~l~LAk~La~~G~~VT~vtt~~ 42 (442)
T PLN02208 7 AFMFPWFAFGHM-IPFLHLANKLAEKGHRVTFLLPKK 42 (442)
T ss_pred EEEecCccccHH-HHHHHHHHHHHhCCCEEEEEeccc
Confidence 466688777533 345699999999999999999653
No 92
>CHL00175 minD septum-site determining protein; Validated
Probab=80.72 E-value=4.7 Score=33.97 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=34.9
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
+++||..+.-.-|+-|.--+++++|.+|+++|++|.++=.
T Consensus 13 ~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~ 52 (281)
T CHL00175 13 TMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDA 52 (281)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 4568888888888889999999999999999999988844
No 93
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=79.89 E-value=13 Score=32.06 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=28.6
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+|||.|.=- |-||-=.... +|.+|+++++++.++..-
T Consensus 1 ~~ki~i~~G--gt~G~i~~a~-l~~~L~~~~~~~~~~~~~ 37 (380)
T PRK00025 1 PLRIAIVAG--EVSGDLLGAG-LIRALKARAPNLEFVGVG 37 (380)
T ss_pred CceEEEEec--CcCHHHHHHH-HHHHHHhcCCCcEEEEEc
Confidence 467776543 3788877777 999999999999888754
No 94
>PRK05568 flavodoxin; Provisional
Probab=79.61 E-value=4.9 Score=30.30 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=32.1
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+|++++.-+ +-|..|+++-.++..+.+.|++|.++...
T Consensus 2 ~~~~IvY~S-~~GnT~~~a~~i~~~~~~~g~~v~~~~~~ 39 (142)
T PRK05568 2 KKINIIYWS-GTGNTEAMANLIAEGAKENGAEVKLLNVS 39 (142)
T ss_pred CeEEEEEEC-CCchHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 467766666 78999999999999999999999988654
No 95
>PLN00414 glycosyltransferase family protein
Probab=79.19 E-value=17 Score=33.71 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=28.4
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 12 AIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 12 ~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+++.|-++.| ==-=++++|+.|+++|++|+++|+..
T Consensus 7 VvlvPfpaqG-Hi~PmL~LAk~Las~G~~VT~vtt~~ 42 (446)
T PLN00414 7 AFMYPWFGFG-HMIPYLHLANKLAEKGHRVTFFLPKK 42 (446)
T ss_pred EEEecCcccc-hHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 5666887775 33446799999999999999999764
No 96
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=79.11 E-value=18 Score=29.74 Aligned_cols=88 Identities=20% Similarity=0.132 Sum_probs=44.9
Q ss_pred HCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccch----hhhhHHHHHHHHHHHHHHHH----HHHhcCCCcEEEE
Q 046633 36 SHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRH----FFYRLHALCAYLRCLFVALC----VLLRSSSYDVIIA 107 (176)
Q Consensus 36 ~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~----i~gr~~alcA~lR~l~~~~~----~~~~~~~~DVvi~ 107 (176)
++||+|..+|...++... +| +.+.++.- |+. +-....-+=+-+++=-++.+ +.-....||||+.
T Consensus 1 q~gh~v~fl~~~~~~~~~-----~G-V~~~~y~~--~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~ 72 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----PG-VRVVRYRP--PRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPDVIIA 72 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----CC-cEEEEeCC--CCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEE
Confidence 479999999976544321 45 55554442 221 11111111111111111111 1112457899996
Q ss_pred cCCCccchhee-cccCceeecccccccccc
Q 046633 108 DQVSVVIPVLK-LRSSTKVFMLNIARYMQI 136 (176)
Q Consensus 108 Dqvs~~iP~l~-l~~~~~vlf~~~~~YcHF 136 (176)
=..=-.--+|| .+.++|++= ||=|
T Consensus 73 H~GWGe~Lflkdv~P~a~li~-----Y~E~ 97 (171)
T PF12000_consen 73 HPGWGETLFLKDVFPDAPLIG-----YFEF 97 (171)
T ss_pred cCCcchhhhHHHhCCCCcEEE-----EEEE
Confidence 55433344556 567888888 8887
No 97
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=79.11 E-value=6.7 Score=29.49 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=28.1
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+.-+-.--|..|...+++++|..++++|+.|.++-...
T Consensus 2 ~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~ 39 (157)
T PF13614_consen 2 VIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDF 39 (157)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--S
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 44444445778999999999999999999988887654
No 98
>PLN02448 UDP-glycosyltransferase family protein
Probab=77.97 E-value=13 Score=34.32 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=29.4
Q ss_pred CCCceEEEEeCCCCCCchHHHHHHHHHHHHHC--CCeEEEEEeec
Q 046633 6 SSKLNVAIIHPDLGIGGAERLIVDAAVELVSH--GHNVHVFTAHH 48 (176)
Q Consensus 6 ~~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~--Gh~V~l~T~~~ 48 (176)
+.+.+|+++ |-.+. |==.=++++|+.|+++ ||+|+++|+..
T Consensus 8 ~~~~hVvlv-p~pa~-GHi~P~l~LA~~L~~~~~G~~VT~~~t~~ 50 (459)
T PLN02448 8 TTSCHVVAM-PYPGR-GHINPMMNLCKLLASRKPDILITFVVTEE 50 (459)
T ss_pred CCCcEEEEE-CCccc-ccHHHHHHHHHHHHcCCCCcEEEEEeCCc
Confidence 345566554 54444 3344567999999999 99999999874
No 99
>PRK11519 tyrosine kinase; Provisional
Probab=77.91 E-value=33 Score=33.61 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=34.2
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
+.|+..+....+.-|--.+.+++|.++++.|+.|.++-.
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~ 563 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDC 563 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 457888888888889999999999999999999999954
No 100
>PRK06756 flavodoxin; Provisional
Probab=77.83 E-value=6 Score=30.30 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=32.4
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||||+++--+ .-|.+|+++-.+|.++.+.|++|.++...
T Consensus 1 mmkv~IiY~S-~tGnTe~vA~~ia~~l~~~g~~v~~~~~~ 39 (148)
T PRK06756 1 MSKLVMIFAS-MSGNTEEMADHIAGVIRETENEIEVIDIM 39 (148)
T ss_pred CceEEEEEEC-CCchHHHHHHHHHHHHhhcCCeEEEeehh
Confidence 4688777544 58999999999999999999999887654
No 101
>PRK11914 diacylglycerol kinase; Reviewed
Probab=77.27 E-value=7.7 Score=33.37 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=34.9
Q ss_pred ccCCCceEEE-EeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 4 RRSSKLNVAI-IHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 4 ~~~~~~kI~~-~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
++..++|+++ +.|.-|.|.+.+..-++...|.+.|+++.++.++.
T Consensus 4 ~~~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 4 RRHEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred CcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 4566788775 55665777888888889999999999998776653
No 102
>PRK09271 flavodoxin; Provisional
Probab=77.22 E-value=5.5 Score=31.34 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=30.8
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
|||+++--+ --|.+|+++-.+|.++.++|++|.++-.
T Consensus 1 mkv~IvY~S-~tGnTe~~A~~ia~~l~~~g~~v~~~~~ 37 (160)
T PRK09271 1 MRILLAYAS-LSGNTREVAREIEERCEEAGHEVDWVET 37 (160)
T ss_pred CeEEEEEEc-CCchHHHHHHHHHHHHHhCCCeeEEEec
Confidence 677777766 4599999999999999999999986643
No 103
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=77.14 E-value=18 Score=32.15 Aligned_cols=85 Identities=24% Similarity=0.251 Sum_probs=50.4
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHHHCCCe-EEEEEeecCCCcccccccCCceeEEEeCCcccchhhhhHHHHHHHHHHHH
Q 046633 12 AIIHPDLGIGGAERLIVDAAVELVSHGHN-VHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAYLRCLF 90 (176)
Q Consensus 12 ~~~hpdLgiGGAERlvvdlA~~l~~~Gh~-V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~lR~l~ 90 (176)
+++..++-.-|--+..+.++.+|+++|+. ++.+. .|++--++... .+|| -++.- .+|
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii--~deslg~~~ns-------~y~~-s~~EK---------~lR--- 60 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRII--DDESLGIEKNS-------NYGD-SQAEK---------ALR--- 60 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEe--chhhcCCCCcc-------cccc-cHHHH---------HHH---
Confidence 35666777788889999999999999976 33332 23332222211 3555 22221 011
Q ss_pred HHHHHHH-hc-CCCcEEEEcCCCccchheec
Q 046633 91 VALCVLL-RS-SSYDVIIADQVSVVIPVLKL 119 (176)
Q Consensus 91 ~~~~~~~-~~-~~~DVvi~Dqvs~~iP~l~l 119 (176)
-.++-.. +. ++-|+||+|.+ +-|=-+|+
T Consensus 61 g~L~S~v~R~Lsk~~iVI~Dsl-NyIKGfRY 90 (281)
T KOG3062|consen 61 GKLRSAVDRSLSKGDIVIVDSL-NYIKGFRY 90 (281)
T ss_pred HHHHHHHHhhcccCcEEEEecc-ccccccee
Confidence 1111111 22 56899999998 88888884
No 104
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.92 E-value=14 Score=33.95 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccchhhhhHH-HHHHHHHHHHHHHHHHHhcCCCc
Q 046633 25 RLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLH-ALCAYLRCLFVALCVLLRSSSYD 103 (176)
Q Consensus 25 RlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~-alcA~lR~l~~~~~~~~~~~~~D 103 (176)
+..-++...|+++||+|.+.+-..+..+=.-+. -| ++..+.|. +-+..++ .+.+...|.+.+-. +..+.+||
T Consensus 14 hfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~-yg-f~~~~Igk----~g~~tl~~Kl~~~~eR~~~L~k-i~~~~kpd 86 (346)
T COG1817 14 HFFKNLIWELEKKGHEVLITCRDFGVVTELLDL-YG-FPYKSIGK----HGGVTLKEKLLESAERVYKLSK-IIAEFKPD 86 (346)
T ss_pred hHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHH-hC-CCeEeecc----cCCccHHHHHHHHHHHHHHHHH-HHhhcCCc
Confidence 556788999999999999887664433211111 12 56666665 2223334 34555566665534 45677899
Q ss_pred EEEEcCCCccchheecccCceeec
Q 046633 104 VIIADQVSVVIPVLKLRSSTKVFM 127 (176)
Q Consensus 104 Vvi~Dqvs~~iP~l~l~~~~~vlf 127 (176)
|.+- -.|.-+|=..+.-+.+.++
T Consensus 87 v~i~-~~s~~l~rvafgLg~psIi 109 (346)
T COG1817 87 VAIG-KHSPELPRVAFGLGIPSII 109 (346)
T ss_pred eEee-cCCcchhhHHhhcCCceEE
Confidence 9885 3344444444322334443
No 105
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=76.36 E-value=4.3 Score=37.96 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=29.8
Q ss_pred EEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 13 IIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 13 ~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
|+-|+ .||-|.-+..+++.|-+.||.|.++|-.
T Consensus 9 ff~P~--~ggveshiy~lSq~li~lghkVvvitha 41 (426)
T KOG1111|consen 9 FFYPS--TGGVESHIYALSQCLIRLGHKVVVITHA 41 (426)
T ss_pred ccccC--CCChhhhHHHhhcchhhcCCeEEEEecc
Confidence 56666 8999999999999999999999999864
No 106
>PLN00142 sucrose synthase
Probab=76.15 E-value=13 Score=37.74 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=22.6
Q ss_pred CCchHHHHHHHH--------HHHHHCCCeEE----EEEeecC
Q 046633 20 IGGAERLIVDAA--------VELVSHGHNVH----VFTAHHD 49 (176)
Q Consensus 20 iGGAERlvvdlA--------~~l~~~Gh~V~----l~T~~~d 49 (176)
.||--..|+++| .+|+++||+|+ |+|-..+
T Consensus 302 tGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~ 343 (815)
T PLN00142 302 TGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIP 343 (815)
T ss_pred CCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccC
Confidence 477777887766 67888999885 8887543
No 107
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=75.46 E-value=3.8 Score=38.22 Aligned_cols=38 Identities=29% Similarity=0.503 Sum_probs=31.1
Q ss_pred eEEEEeCCCCCCchHH-------HHHHHHHHHHHCC-CeEEEEEee
Q 046633 10 NVAIIHPDLGIGGAER-------LIVDAAVELVSHG-HNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAER-------lvvdlA~~l~~~G-h~V~l~T~~ 47 (176)
||++++|....||+|. =+.-+|..|.+.| |+|.++=..
T Consensus 1 ~illi~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD~~ 46 (497)
T TIGR02026 1 RILILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLDAM 46 (497)
T ss_pred CeEEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEeccc
Confidence 6999999998899874 1457788898999 899998554
No 108
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=74.55 E-value=50 Score=27.69 Aligned_cols=101 Identities=19% Similarity=0.158 Sum_probs=59.7
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCccccccc---C-CceeEEEeCCcccchhhhhHHHHHHH
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETV---N-GTFPVTVYGDFLPRHFFYRLHALCAY 85 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~---~-G~l~V~v~Gd~lPr~i~gr~~alcA~ 85 (176)
.|.+.-++ .-|--..++-+|.+-+.+|+.|.++=.--.... ..|.. . +.+++...|.-+.-.--.+ .--.+.
T Consensus 24 ~v~v~~g~--GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~-~GE~~~l~~l~~v~~~~~g~~~~~~~~~~-~e~~~~ 99 (191)
T PRK05986 24 LLIVHTGN--GKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWS-TGERNLLEFGGGVEFHVMGTGFTWETQDR-ERDIAA 99 (191)
T ss_pred eEEEECCC--CCChHHHHHHHHHHHHHCCCeEEEEEEecCCCc-cCHHHHHhcCCCcEEEECCCCCcccCCCc-HHHHHH
Confidence 45555555 557778888888889999999999876543311 12211 0 2367776665111000011 112344
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCccc
Q 046633 86 LRCLFVALCVLLRSSSYDVIIADQVSVVI 114 (176)
Q Consensus 86 lR~l~~~~~~~~~~~~~DVvi~Dqvs~~i 114 (176)
.+..|....-.+.+.++|++|.|.+..++
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al 128 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYAL 128 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHH
Confidence 55555544445567899999999996554
No 109
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=74.41 E-value=8.2 Score=34.87 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHHHH--CCCeEE---EEEeecC-CCcccccccCCceeEEEeCCccc-chhhhhHHHHHH-HHHHHHHHH
Q 046633 22 GAERLIVDAAVELVS--HGHNVH---VFTAHHD-KRRCFEETVNGTFPVTVYGDFLP-RHFFYRLHALCA-YLRCLFVAL 93 (176)
Q Consensus 22 GAERlvvdlA~~l~~--~Gh~V~---l~T~~~d-~~hcF~Et~~G~l~V~v~Gd~lP-r~i~gr~~alcA-~lR~l~~~~ 93 (176)
|=+-..+.+|.+|++ .|++|. ++.+... ++.-+.. .|.++....|. +. .+..+.+..+++ .++-++..+
T Consensus 8 ged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~--~g~~~~~~sgg-~~~~~~~~~~~~~~~gl~~~~~~~~ 84 (396)
T TIGR03492 8 GEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPI--IGPTKELPSGG-FSYQSLRGLLRDLRAGLVGLTLGQW 84 (396)
T ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCce--eCCCCCCCCCC-ccCCCHHHHHHHHHhhHHHHHHHHH
Confidence 444556788999998 699999 8876522 1111111 11222222333 33 345567777777 777777776
Q ss_pred HHHHhc-CCCcEEEEcCCCccchhee-cccCceeec
Q 046633 94 CVLLRS-SSYDVIIADQVSVVIPVLK-LRSSTKVFM 127 (176)
Q Consensus 94 ~~~~~~-~~~DVvi~Dqvs~~iP~l~-l~~~~~vlf 127 (176)
.++.+. .+||+|+.-- .-+|++. ++.+.+.++
T Consensus 85 ~~~~~~~~~p~~v~~~G--g~v~~~aA~~~~~p~~~ 118 (396)
T TIGR03492 85 RALRKWAKKGDLIVAVG--DIVPLLFAWLSGKPYAF 118 (396)
T ss_pred HHHHHHhhcCCEEEEEC--cHHHHHHHHHcCCCceE
Confidence 644332 3899999543 3347766 566655544
No 110
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=74.33 E-value=7.6 Score=31.56 Aligned_cols=40 Identities=23% Similarity=0.140 Sum_probs=31.6
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
|||.-+.-.-|+=|---+++++|.+|+++|+.|-++-...
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~ 40 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDP 40 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4555455555777899999999999999999999987643
No 111
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=74.08 E-value=8.3 Score=31.38 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=33.5
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHH-CCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVS-HGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~-~Gh~V~l~T~~ 47 (176)
||||+++.-+. -|-.|+++-.++..+.+ .|.+|.++...
T Consensus 1 M~kilIvy~S~-~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MAKVLVLYYSM-YGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CCeEEEEEcCC-CCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 36899998886 47799999999999998 99999999874
No 112
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=73.45 E-value=4.5 Score=31.47 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=24.3
Q ss_pred ceEEEEeCCCCCCch-HHHHHHHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGA-ERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGA-ERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
|||+|+.-.+..=-. .--.+.++.+-++|||+|..++..
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 689999887532112 224566888889999999988765
No 113
>PRK06703 flavodoxin; Provisional
Probab=73.28 E-value=8.1 Score=29.67 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=31.5
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||||+++=-+ .-|.+|+++-.+|..+.+.|++|.+.-..
T Consensus 1 mmkv~IiY~S-~tGnT~~iA~~ia~~l~~~g~~v~~~~~~ 39 (151)
T PRK06703 1 MAKILIAYAS-MSGNTEDIADLIKVSLDAFDHEVVLQEMD 39 (151)
T ss_pred CCeEEEEEEC-CCchHHHHHHHHHHHHHhcCCceEEEehh
Confidence 4676655544 57999999999999999999999887553
No 114
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=72.84 E-value=11 Score=31.55 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=33.3
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
+..|+..+-..-|.-|.--+++++|.++++.|++|.++=.
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 3456666666668889999999999999999999999855
No 115
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=72.55 E-value=28 Score=31.07 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=49.4
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEeecCCCccccccc-C-C-ce-eEEEeCCcccchhhhhHHHHHHHHHHHHHHHHH
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETV-N-G-TF-PVTVYGDFLPRHFFYRLHALCAYLRCLFVALCV 95 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~-~-G-~l-~V~v~Gd~lPr~i~gr~~alcA~lR~l~~~~~~ 95 (176)
.||= -.-..+|++|+++|++|.++...... .++.. + + .+ .+.+.| +. +.+..+...++.+..+..
T Consensus 15 tsGh-i~paal~~~l~~~~~~~~~~g~gg~~---m~~~g~~~~~~~~~l~v~G--~~----~~l~~~~~~~~~~~~~~~- 83 (385)
T TIGR00215 15 ASGD-ILGAGLRQQLKEHYPNARFIGVAGPR---MAAEGCEVLYSMEELSVMG--LR----EVLGRLGRLLKIRKEVVQ- 83 (385)
T ss_pred ccHH-HHHHHHHHHHHhcCCCcEEEEEccHH---HHhCcCccccChHHhhhcc--HH----HHHHHHHHHHHHHHHHHH-
Confidence 3443 33338999999999999999865321 11110 0 0 01 122222 11 122333333444443433
Q ss_pred HHhcCCCcEEEEcCCCccch--heec--ccCceeec
Q 046633 96 LLRSSSYDVIIADQVSVVIP--VLKL--RSSTKVFM 127 (176)
Q Consensus 96 ~~~~~~~DVvi~Dqvs~~iP--~l~l--~~~~~vlf 127 (176)
.+++.+||+|+.-. +.+.| +.+. ..+-|+++
T Consensus 84 ~l~~~kPd~vi~~g-~~~~~~~~a~aa~~~gip~v~ 118 (385)
T TIGR00215 84 LAKQAKPDLLVGID-APDFNLTKELKKKDPGIKIIY 118 (385)
T ss_pred HHHhcCCCEEEEeC-CCCccHHHHHHHhhCCCCEEE
Confidence 35678999988755 36666 3221 23567777
No 116
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=72.34 E-value=9.7 Score=32.97 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=27.8
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
++.+|+|. .=|+=|---+++|+|.+|+++|++|-++=.
T Consensus 3 ~~~~iai~--~KGGvGKTt~~~nLa~~la~~g~kVLliD~ 40 (295)
T PRK13234 3 KLRQIAFY--GKGGIGKSTTSQNTLAALVEMGQKILIVGC 40 (295)
T ss_pred cceEEEEE--CCCCccHHHHHHHHHHHHHHCCCeEEEEec
Confidence 34466674 333335666789999999999999999844
No 117
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=71.09 E-value=9.4 Score=34.30 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=33.6
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
+..+|++.-| +.|-=.-+..+|+.|+++||+|++++...+.
T Consensus 5 ~~~~il~~~p---~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~ 45 (496)
T KOG1192|consen 5 KAHNILVPFP---GQSHLNPMLQLAKRLAERGHNVTVVTPSFNA 45 (496)
T ss_pred cceeEEEECC---cccHHHHHHHHHHHHHHcCCceEEEEeechh
Confidence 3457788888 6677778889999999999999999987543
No 118
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=70.35 E-value=11 Score=31.56 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=28.6
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
|+|++. .=|+=|-=-.++++|.+|+++|++|-++=.
T Consensus 1 ~~i~~~--gKGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVY--GKGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CEEEEE--cCCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 678888 344446677889999999999999988843
No 119
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=70.14 E-value=20 Score=25.29 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=25.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 16 PDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 16 pdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
-.-|.-|.--+..++|..++++|.+|.++-.
T Consensus 6 ~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~ 36 (104)
T cd02042 6 NQKGGVGKTTTAVNLAAALARRGKRVLLIDL 36 (104)
T ss_pred eCCCCcCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 3346678888999999999999999988863
No 120
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=70.08 E-value=11 Score=31.60 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=29.6
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
|+|++. +=|+=|---+.+++|.+|+++|++|.++=..
T Consensus 1 ~~i~v~--gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVY--GKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEe--cCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 678888 3455566778899999999999999888544
No 121
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=69.11 E-value=6.4 Score=34.05 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=25.4
Q ss_pred CCCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 6 SSKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 6 ~~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+++|||+++ |.|+ +=.-+|..|++.||+|++++-.
T Consensus 3 ~~~m~I~Ii----G~Ga---iG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGII----GTGA---IGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEE----CCCH---HHHHHHHHHHHCCCeEEEEEeC
Confidence 345899988 3332 2236788999999999999753
No 122
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=68.92 E-value=18 Score=29.32 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=32.8
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHH-CCCeEEEEEeec
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVS-HGHNVHVFTAHH 48 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~-~Gh~V~l~T~~~ 48 (176)
.++|+..+--.-|.=|.--+++++|.+|++ +|++|.++-...
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~ 75 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADL 75 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 346666666555777899999999999997 699999986653
No 123
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=68.75 E-value=32 Score=27.85 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEeecCC-----CcccccccCCceeEEEeCCc---ccchhhhhHHHHHHHHHHHHHHH
Q 046633 22 GAERLIVDAAVELVSHGHNVHVFTAHHDK-----RRCFEETVNGTFPVTVYGDF---LPRHFFYRLHALCAYLRCLFVAL 93 (176)
Q Consensus 22 GAERlvvdlA~~l~~~Gh~V~l~T~~~d~-----~hcF~Et~~G~l~V~v~Gd~---lPr~i~gr~~alcA~lR~l~~~~ 93 (176)
|--..+.-+|.+-+.+|+.|.++-.-... ...++.. + .+++...|.- .... ...--+..+..|...
T Consensus 14 Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~-~v~~~~~g~~~~~~~~~----~~~~~~~a~~~~~~a 87 (159)
T cd00561 14 GKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL-P-NIEIHRMGRGFFWTTEN----DEEDIAAAAEGWAFA 87 (159)
T ss_pred CHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC-C-CcEEEECCCCCccCCCC----hHHHHHHHHHHHHHH
Confidence 45566667777777899999986543322 1112222 2 3777777751 1111 111123334555544
Q ss_pred HHHHhcCCCcEEEEcCCCccch
Q 046633 94 CVLLRSSSYDVIIADQVSVVIP 115 (176)
Q Consensus 94 ~~~~~~~~~DVvi~Dqvs~~iP 115 (176)
.-.+...++|++|.|.+..+++
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~ 109 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALG 109 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhh
Confidence 4445678999999999987765
No 124
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=68.00 E-value=9.5 Score=32.10 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=31.9
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+++||++-.++ ..||=+-+.++++.|.+.|++|.++.+..
T Consensus 4 ~~k~IllgVTG--siaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 4 KGKRIGFGLTG--SHCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred CCCEEEEEEcC--HHHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 35689887776 66666657899999999999998888764
No 125
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=67.67 E-value=12 Score=25.56 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCCeEEEEEeecCCCcccc-cccCCceeEEEeCCc
Q 046633 28 VDAAVELVSHGHNVHVFTAHHDKRRCFE-ETVNGTFPVTVYGDF 70 (176)
Q Consensus 28 vdlA~~l~~~Gh~V~l~T~~~d~~hcF~-Et~~G~l~V~v~Gd~ 70 (176)
..+|..|+++|++|+++-.+...+-+-. ...+| ..+..-..+
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g-~~~d~g~~~ 51 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPG-YRFDLGAHY 51 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETT-EEEETSS-S
T ss_pred HHHHHHHHHCCCcEEEEecCcccCcceeEEEECC-EEEeeccEE
Confidence 3578899999999999998876655433 33344 444433333
No 126
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=67.52 E-value=14 Score=30.56 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=29.0
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+.|+|. +=|+=|---+++++|.+|+++|++|-++=..
T Consensus 2 ~~iav~--~KGGvGKTT~~~nLA~~La~~G~kVlliD~D 38 (270)
T cd02040 2 RQIAIY--GKGGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred cEEEEE--eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 357776 4455577788999999999999999988543
No 127
>PLN02210 UDP-glucosyl transferase
Probab=67.36 E-value=84 Score=29.21 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=29.0
Q ss_pred CCCceEEEEeCCCCCCchHHHHHHHHHH--HHHCCCeEEEEEeecC
Q 046633 6 SSKLNVAIIHPDLGIGGAERLIVDAAVE--LVSHGHNVHVFTAHHD 49 (176)
Q Consensus 6 ~~~~kI~~~hpdLgiGGAERlvvdlA~~--l~~~Gh~V~l~T~~~d 49 (176)
..+.+|+ +.|-.+.| ==-=++++|+. |+++|+.|+++++.+.
T Consensus 6 ~~~~hvv-~~P~pa~G-Hi~P~l~La~~L~L~~~G~~VT~v~t~~~ 49 (456)
T PLN02210 6 GQETHVL-MVTLAFQG-HINPMLKLAKHLSLSSKNLHFTLATTEQA 49 (456)
T ss_pred CCCCEEE-EeCCcccc-cHHHHHHHHHHHHhhcCCcEEEEEeccch
Confidence 3344554 45666554 33345699999 5699999999998753
No 128
>PRK13768 GTPase; Provisional
Probab=67.34 E-value=57 Score=27.67 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=30.1
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
|++.++... |+-|---++.+++.+++++|++|.++...+
T Consensus 2 ~~~i~v~G~-~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGT-AGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECC-CCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 455555433 577888889999999999999999997554
No 129
>PRK05920 aromatic acid decarboxylase; Validated
Probab=67.03 E-value=10 Score=32.04 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=32.4
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
.++||++-..+ ..||. -..++...|.+.|++|.++.+...
T Consensus 2 ~~krIllgITG--siaa~-ka~~lvr~L~~~g~~V~vi~T~~A 41 (204)
T PRK05920 2 KMKRIVLAITG--ASGAI-YGVRLLECLLAADYEVHLVISKAA 41 (204)
T ss_pred CCCEEEEEEeC--HHHHH-HHHHHHHHHHHCCCEEEEEEChhH
Confidence 35789988876 66675 777999999999999998887643
No 130
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=66.80 E-value=45 Score=29.16 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=21.6
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
.|| .--+.+++++|+++ |+|+++|...+
T Consensus 14 ~G~-~~r~~~~~~~L~~~-~~v~l~~~~~~ 41 (397)
T TIGR03087 14 KGD-KIRSFHLLRHLAAR-HRVHLGTFVDD 41 (397)
T ss_pred CCC-cEeHHHHHHHHHhc-CcEEEEEeCCC
Confidence 355 55567999999776 99999998643
No 131
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=66.79 E-value=9.9 Score=31.17 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=31.1
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
++||++...+ .-||.+ +.++.+.|+++|++|.++.+..
T Consensus 1 ~k~Ill~vtG--siaa~~-~~~li~~L~~~g~~V~vv~T~~ 38 (182)
T PRK07313 1 MKNILLAVSG--SIAAYK-AADLTSQLTKRGYQVTVLMTKA 38 (182)
T ss_pred CCEEEEEEeC--hHHHHH-HHHHHHHHHHCCCEEEEEEChh
Confidence 3578888776 667777 6799999999999998888764
No 132
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=66.76 E-value=15 Score=32.89 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=33.6
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+++||..+...=|+=|---+.+++|.+|+++|+.|-++=..
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 45677767666677788999999999999999999988543
No 133
>PRK10818 cell division inhibitor MinD; Provisional
Probab=66.76 E-value=16 Score=30.51 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=32.1
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+||.-+.-.=|+=|.--+++++|.+|+++|++|.++=...
T Consensus 2 ~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4665555555777999999999999999999998886543
No 134
>PRK13055 putative lipid kinase; Reviewed
Probab=66.52 E-value=15 Score=32.30 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=33.4
Q ss_pred ceEE-EEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCc
Q 046633 9 LNVA-IIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRR 52 (176)
Q Consensus 9 ~kI~-~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~h 52 (176)
||+. ++.|.-|.|.+.+..-.+...|.+.|+++.++.+...++|
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~ 47 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNS 47 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCcc
Confidence 4655 6778877777788888999999999999988755544444
No 135
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=66.48 E-value=14 Score=31.30 Aligned_cols=40 Identities=30% Similarity=0.532 Sum_probs=27.0
Q ss_pred ccCCCceEEEE--eCC---CCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 4 RRSSKLNVAII--HPD---LGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 4 ~~~~~~kI~~~--hpd---LgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
+...+++|+++ ||| +|.||. ...+.++|++|.+++....+
T Consensus 6 ~~~~~~~vL~v~aHPDDe~~g~ggt-------la~~~~~G~~V~v~~lT~Ge 50 (237)
T COG2120 6 PMLDPLRVLVVFAHPDDEEIGCGGT-------LAKLAARGVEVTVVCLTLGE 50 (237)
T ss_pred ccccCCcEEEEecCCcchhhccHHH-------HHHHHHCCCeEEEEEccCCc
Confidence 34455676655 666 466663 45668899999999987543
No 136
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=66.02 E-value=13 Score=28.43 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=28.9
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEE
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHV 43 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l 43 (176)
||++++--+ .-|.+|+++-.+|..+.+.|++|.+
T Consensus 1 M~i~IiY~S-~tGnTe~iA~~ia~~l~~~g~~v~~ 34 (140)
T TIGR01754 1 MRILLAYLS-LSGNTEEVAFMIQDYLQKDGHEVDI 34 (140)
T ss_pred CeEEEEEEC-CCChHHHHHHHHHHHHhhCCeeEEe
Confidence 577777766 5699999999999999999999873
No 137
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=65.72 E-value=15 Score=29.67 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=29.4
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
|.-+.-.=|+-|.--+++++|.+|+++|+.|.++=.
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~ 37 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDA 37 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 444455557779999999999999999999998854
No 138
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=65.59 E-value=15 Score=31.80 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=31.4
Q ss_pred ccccCCCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 2 EQRRSSKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 2 ~~~~~~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
+++.+..|||++. ||+-.+=..++.+|.++|++|.++.
T Consensus 4 ~~~~~~~~~vLVt------G~~GfIG~~l~~~L~~~G~~V~~~~ 41 (353)
T PLN02896 4 EGRESATGTYCVT------GATGYIGSWLVKLLLQRGYTVHATL 41 (353)
T ss_pred cccccCCCEEEEE------CCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 3566777888774 7888899999999999999998764
No 139
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=65.49 E-value=18 Score=27.98 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=28.7
Q ss_pred ceEEEEeCCCCCCch-HHHHHHHHHHHHHCCCeE-EEEEee
Q 046633 9 LNVAIIHPDLGIGGA-ERLIVDAAVELVSHGHNV-HVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGA-ERlvvdlA~~l~~~Gh~V-~l~T~~ 47 (176)
||++|+..+--.|+. =|-.+++|.++.+.||+| .++-..
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 678877766544443 378899999999999994 666544
No 140
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=65.43 E-value=61 Score=29.30 Aligned_cols=36 Identities=14% Similarity=0.317 Sum_probs=29.2
Q ss_pred EEEeCCCCCCchHH--HHHHHHHHHHHCCCeEEEEEee
Q 046633 12 AIIHPDLGIGGAER--LIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 12 ~~~hpdLgiGGAER--lvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
++..=++..||+=+ ++.-+|+.|+++|+.|-+++--
T Consensus 58 VIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRG 95 (338)
T PRK01906 58 VVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRG 95 (338)
T ss_pred EEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecC
Confidence 46777887777655 7889999999999999999843
No 141
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=65.39 E-value=31 Score=27.66 Aligned_cols=36 Identities=17% Similarity=0.360 Sum_probs=24.5
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCe--EEEEEeecC
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHN--VHVFTAHHD 49 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~--V~l~T~~~d 49 (176)
|||+|+-.+ .| .....+.+++.+++++ +..+.++.+
T Consensus 1 mrI~~~~Sg--~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~ 38 (181)
T PF00551_consen 1 MRIVFFGSG--SG---SFLKALLEALKARGHNVEIVLVITNPD 38 (181)
T ss_dssp EEEEEEESS--SS---HHHHHHHHHHHTTSSEEEEEEEEESST
T ss_pred CEEEEEEcC--CC---HHHHHHHHHHHhCCCCceEEEEecccc
Confidence 799998665 22 5566788899999998 444443433
No 142
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=65.27 E-value=10 Score=31.11 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=24.9
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
|||+|+ ||+=.+-..+|..|++.||+|.++..
T Consensus 1 MkI~II------GG~G~mG~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVL------GGTGDQGKGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEE------cCCCHHHHHHHHHHHhCCCEEEEEEc
Confidence 577773 55556777899999999999998743
No 143
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=65.26 E-value=34 Score=29.59 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=21.6
Q ss_pred Cc-hHHHHHHHHHHHHHCCCeEEEEEeecCCC
Q 046633 21 GG-AERLIVDAAVELVSHGHNVHVFTAHHDKR 51 (176)
Q Consensus 21 GG-AERlvvdlA~~l~~~Gh~V~l~T~~~d~~ 51 (176)
|| .| --.+|.+|.++||+|...+......
T Consensus 7 GGT~e--gr~la~~L~~~g~~v~~s~~t~~~~ 36 (256)
T TIGR00715 7 GGTVD--SRAIAKGLIAQGIEILVTVTTSEGK 36 (256)
T ss_pred echHH--HHHHHHHHHhCCCeEEEEEccCCcc
Confidence 66 44 7788899999999998877664433
No 144
>PRK05569 flavodoxin; Provisional
Probab=64.97 E-value=17 Score=27.39 Aligned_cols=38 Identities=24% Similarity=0.096 Sum_probs=30.4
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+||+++--+ +-|..|+++-.+|..+.+.|.+|.++...
T Consensus 2 ~ki~iiY~S-~tGnT~~iA~~i~~~~~~~g~~v~~~~~~ 39 (141)
T PRK05569 2 KKVSIIYWS-CGGNVEVLANTIADGAKEAGAEVTIKHVA 39 (141)
T ss_pred CeEEEEEEC-CCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 366655555 48999999999999999999999877654
No 145
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=64.78 E-value=13 Score=28.87 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=29.9
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
||||.++=-+. -|.+|.++=.++..+.+.|++|.+.-
T Consensus 1 M~ki~Ivy~S~-tGnTe~vA~~i~~~l~~~~~~~~~~~ 37 (151)
T COG0716 1 MMKILIVYGSR-TGNTEKVAEIIAEELGADGFEVDIDI 37 (151)
T ss_pred CCeEEEEEEcC-CCcHHHHHHHHHHHhccCCceEEEee
Confidence 46777766553 49999999999999999999994443
No 146
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=64.75 E-value=8.6 Score=34.39 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=29.2
Q ss_pred EEEeCCCCCCchHH--HHHHHHHHHHHCCCeEEEEEeec
Q 046633 12 AIIHPDLGIGGAER--LIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 12 ~~~hpdLgiGGAER--lvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
++..=++..||+=+ ++.-+|+.|+++|+.|-+++--+
T Consensus 37 VIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 37 VISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred EEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 45667776776654 78899999999999999998644
No 147
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=64.73 E-value=10 Score=34.64 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=29.3
Q ss_pred EEEeCCCCCCchH--HHHHHHHHHHHHCCCeEEEEEeec
Q 046633 12 AIIHPDLGIGGAE--RLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 12 ~~~hpdLgiGGAE--RlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+++.-++..||+= -+++-+|.+|+++|..|-+++--+
T Consensus 49 VI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGY 87 (336)
T COG1663 49 VICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGY 87 (336)
T ss_pred EEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCc
Confidence 4566677667665 488999999999999999988543
No 148
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=64.59 E-value=12 Score=31.69 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=29.9
Q ss_pred CceEEEEeCCCCCCchHHHH-----HHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLI-----VDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlv-----vdlA~~l~~~Gh~V~l~T~~ 47 (176)
++||+++. |.-.+|+-+ -.+.++|.++||+|.++...
T Consensus 4 ~~~v~~~~---g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 4 FGKVAVLM---GGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CcEEEEEe---CCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 35899887 566777766 78999999999999988644
No 149
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=64.50 E-value=3 Score=37.78 Aligned_cols=28 Identities=32% Similarity=0.303 Sum_probs=21.2
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+.==..+..+|++|+++||+|++++...
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 3444567789999999999999999875
No 150
>PRK09739 hypothetical protein; Provisional
Probab=63.80 E-value=24 Score=28.48 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=29.0
Q ss_pred CCceEEEE--eCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 7 SKLNVAII--HPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 7 ~~~kI~~~--hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+||||+++ ||.. .|-..+++-.++.++.+.|++|+++-..
T Consensus 2 ~mmkiliI~~sp~~-~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 2 QSMRIYLVWAHPRH-DSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred CCceEEEEEcCCCC-CCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 47888877 5553 2445677777778889999999887654
No 151
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=63.79 E-value=20 Score=31.06 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=33.5
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.++|+.-+.-.-|+=|+--+.+++|.+++++|.+|.++=..
T Consensus 91 ~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D 131 (322)
T TIGR03815 91 ARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDAD 131 (322)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 34677766666678899999999999999999999888443
No 152
>PLN02173 UDP-glucosyl transferase family protein
Probab=63.19 E-value=60 Score=30.31 Aligned_cols=36 Identities=17% Similarity=0.055 Sum_probs=28.6
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 12 AIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 12 ~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+++.|-++.|= =-=++++|+.|+++|..|+++|+..
T Consensus 8 vv~~P~paqGH-i~P~l~lAk~La~~G~~vT~v~t~~ 43 (449)
T PLN02173 8 VLAVPFPSQGH-ITPIRQFCKRLHSKGFKTTHTLTTF 43 (449)
T ss_pred EEEecCccccc-HHHHHHHHHHHHcCCCEEEEEECCc
Confidence 56678887653 3446799999999999999999874
No 153
>PRK13054 lipid kinase; Reviewed
Probab=62.70 E-value=23 Score=30.51 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=28.0
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
|||++++.- +.+|+.+.+-++...|.+.|+++.+.++.+
T Consensus 3 ~~~~~~i~N--~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~ 41 (300)
T PRK13054 3 FPKSLLILN--GKSAGNEELREAVGLLREEGHTLHVRVTWE 41 (300)
T ss_pred CceEEEEEC--CCccchHHHHHHHHHHHHcCCEEEEEEecC
Confidence 567776655 344455666688888999999998877653
No 154
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=62.58 E-value=17 Score=30.68 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=27.3
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
.|++. .=|+=|---+++|+|.+|+++|++|-++=
T Consensus 3 ~iav~--gKGGVGKTT~a~nLA~~La~~G~rVllvD 36 (273)
T PRK13232 3 QIAIY--GKGGIGKSTTTQNLTAALSTMGNKILLVG 36 (273)
T ss_pred EEEEE--CCCCCcHHHHHHHHHHHHHhhCCCeEEEe
Confidence 45555 55555777889999999999999999883
No 155
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=62.43 E-value=21 Score=29.03 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=30.1
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
||..+.-.=|+=|.--+++++|.+|+++|+.|.++=.
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~ 38 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDA 38 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 4555555557778999999999999999999998854
No 156
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.31 E-value=32 Score=32.78 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=33.8
Q ss_pred EeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccc
Q 046633 14 IHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEET 57 (176)
Q Consensus 14 ~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et 57 (176)
..-+|..+|--....-+|..++++|+.|-++...-=....|+..
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQL 148 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQL 148 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHH
Confidence 33466677788888899999999999999998765445557643
No 157
>PRK06849 hypothetical protein; Provisional
Probab=61.79 E-value=16 Score=32.49 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=27.5
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
++|||++. ||.=-..+.+|.+|.+.||+|+++.++.
T Consensus 3 ~~~~VLI~------G~~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLIT------GARAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEe------CCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46788876 2222367899999999999999997764
No 158
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=61.26 E-value=17 Score=34.10 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=35.4
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
..++++.|++..|.-|..|--++...+++|++|.++-.+
T Consensus 125 ~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~R 163 (409)
T KOG1838|consen 125 DPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHR 163 (409)
T ss_pred CcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCC
Confidence 468999999999999999999999999999999987544
No 159
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=61.18 E-value=15 Score=29.81 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=31.1
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||+++.|++...--..+.--+..++++.|++|.+..+.
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~ 38 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELISTDAQ 38 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 58889999877778888888888888999998876554
No 160
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=61.12 E-value=24 Score=27.15 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=29.0
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|++..+. |+-|---+++++|..++++|+.|.++-...+
T Consensus 1 I~v~~~k-GG~GKTt~a~~la~~la~~g~~VlliD~D~~ 38 (195)
T PF01656_consen 1 IAVTSGK-GGVGKTTIAANLAQALARKGKKVLLIDLDPQ 38 (195)
T ss_dssp EEEEESS-TTSSHHHHHHHHHHHHHHTTS-EEEEEESTT
T ss_pred CEEEcCC-CCccHHHHHHHHHhccccccccccccccCcc
Confidence 3444444 6668888999999999999999999987543
No 161
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=60.84 E-value=11 Score=32.97 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=30.2
Q ss_pred ceEEEEeCCCCCCchHH-HHHHHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAER-LIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAER-lvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
|||+|++.++..=.++. -...+..+-+++||+|.+++..
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~ 40 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPG 40 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehh
Confidence 68999998765444555 5667888889999999988764
No 162
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=60.74 E-value=17 Score=24.88 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 25 RLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 25 RlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
-.-+++|..|++.|.+|+++......
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred HHHHHHHHHHHHhCcEEEEEeccchh
Confidence 46789999999999999999876443
No 163
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=60.42 E-value=18 Score=32.03 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=29.3
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
++|||++. ||+=.+=-.++..|.++||+|+.++..
T Consensus 20 ~~~~IlVt------GgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICIT------GAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEE------CCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 45788875 777788899999999999999988753
No 164
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=59.62 E-value=87 Score=28.29 Aligned_cols=90 Identities=26% Similarity=0.426 Sum_probs=50.2
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCC-cee-EEEeCCcccchhhhhHHHHHHHHHHH
Q 046633 12 AIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNG-TFP-VTVYGDFLPRHFFYRLHALCAYLRCL 89 (176)
Q Consensus 12 ~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G-~l~-V~v~Gd~lPr~i~gr~~alcA~lR~l 89 (176)
-+.-|. ..|.-.+...+..+.++.|.-+.++-.++.-..-+-+.. | .++ +.+. =|.+ +. .+ +
T Consensus 57 Ei~G~~--ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~l-Gvdl~rllv~---~P~~--~E-~a-------l 120 (322)
T PF00154_consen 57 EIYGPE--SSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESL-GVDLDRLLVV---QPDT--GE-QA-------L 120 (322)
T ss_dssp EEEEST--TSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHT-T--GGGEEEE---E-SS--HH-HH-------H
T ss_pred EEeCCC--CCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhc-CccccceEEe---cCCc--HH-HH-------H
Confidence 366666 668899999999999999999988877665433333322 3 111 2211 1332 11 11 1
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCccchhee
Q 046633 90 FVALCVLLRSSSYDVIIADQVSVVIPVLK 118 (176)
Q Consensus 90 ~~~~~~~~~~~~~DVvi~Dqvs~~iP~l~ 118 (176)
+++ -.++++...|+|++|.+++-+|--.
T Consensus 121 ~~~-e~lirsg~~~lVVvDSv~al~p~~E 148 (322)
T PF00154_consen 121 WIA-EQLIRSGAVDLVVVDSVAALVPKAE 148 (322)
T ss_dssp HHH-HHHHHTTSESEEEEE-CTT-B-HHH
T ss_pred HHH-HHHhhcccccEEEEecCcccCCHHH
Confidence 333 2235677889999999998887543
No 165
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=59.25 E-value=23 Score=28.26 Aligned_cols=42 Identities=21% Similarity=0.117 Sum_probs=29.2
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCC
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKR 51 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~ 51 (176)
+.+.+++.|| +-|-..-+-++|..|+++|+.|.+.-......
T Consensus 13 ~~~~Vvv~~d--~~G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~ 54 (218)
T PF01738_consen 13 PRPAVVVIHD--IFGLNPNIRDLADRLAEEGYVVLAPDLFGGRG 54 (218)
T ss_dssp SEEEEEEE-B--TTBS-HHHHHHHHHHHHTT-EEEEE-CCCCTS
T ss_pred CCCEEEEEcC--CCCCchHHHHHHHHHHhcCCCEEecccccCCC
Confidence 4566666677 67777888899999999999998877664444
No 166
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=59.25 E-value=47 Score=27.63 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=27.3
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
|||+++=|- .||.-|...|.-.+-. -|+++++|.
T Consensus 1 M~ILlle~y--~ggSHk~~~~~L~~~~--~~~~~lltL 34 (168)
T PF12038_consen 1 MRILLLEPY--YGGSHKQWADGLAAHS--EHEWTLLTL 34 (168)
T ss_pred CeEEEEccc--cccCHHHHHHHHHHhc--cCCEEEEEc
Confidence 789999998 8999997766555544 589999997
No 167
>PRK07308 flavodoxin; Validated
Probab=59.16 E-value=23 Score=27.09 Aligned_cols=28 Identities=29% Similarity=0.261 Sum_probs=24.7
Q ss_pred CCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 19 GIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 19 giGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
--|.+|+++-.+|..+.+.|++|.+.-.
T Consensus 11 ~tGnTe~iA~~ia~~l~~~g~~~~~~~~ 38 (146)
T PRK07308 11 MTGNTEEIADIVADKLRELGHDVDVDEC 38 (146)
T ss_pred CCchHHHHHHHHHHHHHhCCCceEEEec
Confidence 4699999999999999999999987644
No 168
>PLN00016 RNA-binding protein; Provisional
Probab=58.94 E-value=14 Score=32.54 Aligned_cols=39 Identities=36% Similarity=0.459 Sum_probs=28.6
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.++||+++-.+ .||.=.+=..++.+|.++||+|++++-.
T Consensus 51 ~~~~VLVt~~~--~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 51 EKKKVLIVNTN--SGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ccceEEEEecc--CCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 34678776566 3444556667888999999999998865
No 169
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=58.90 E-value=14 Score=33.67 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=26.2
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+|||+|+ ++|.-|. -+|..|+++||+|+.+-..
T Consensus 3 ~~kI~VI--GlG~~G~-----~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 3 FETISVI--GLGYIGL-----PTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred ccEEEEE--CcchhhH-----HHHHHHHhCCCEEEEEeCC
Confidence 5789988 6665454 6899999999999988654
No 170
>PRK06988 putative formyltransferase; Provisional
Probab=58.70 E-value=35 Score=30.14 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=26.9
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
||||+|+ |.-...+...++|.+.|++|..+.++.|.
T Consensus 2 ~mkIvf~-------Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~ 37 (312)
T PRK06988 2 KPRAVVF-------AYHNVGVRCLQVLLARGVDVALVVTHEDN 37 (312)
T ss_pred CcEEEEE-------eCcHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 4899997 33346677888888899999877776554
No 171
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=58.69 E-value=25 Score=32.09 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=31.8
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
+|+|.-+.-.=|+=|---.++++|.+|+++|+.|-++=.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDl 158 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDL 158 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcC
Confidence 467766666656767888999999999999999998844
No 172
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=58.68 E-value=14 Score=36.22 Aligned_cols=36 Identities=39% Similarity=0.637 Sum_probs=26.5
Q ss_pred CCceEEEE--eCC---CCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 7 SKLNVAII--HPD---LGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 7 ~~~kI~~~--hpd---LgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
.++||+++ ||| +|.||. ...|.++||+|+++.....
T Consensus 368 ~~~rvLv~spHPDDevi~~GGT-------larl~~~G~~V~vv~~TsG 408 (652)
T PRK02122 368 YPKRVIIFSPHPDDDVISMGGT-------FRRLVEQGHDVHVAYQTSG 408 (652)
T ss_pred CCceEEEEEeCCCchHhhhHHH-------HHHHHHCCCcEEEEEecCC
Confidence 34777766 676 588884 3678889999999877743
No 173
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=58.58 E-value=70 Score=29.28 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=24.4
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
.+|+++.. +++ .+..++..|.+.|-+|..+.+...
T Consensus 300 gkrv~v~g------~~~-~~~~l~~~L~elG~~~~~v~~~~~ 334 (429)
T cd03466 300 GRKAAIYG------EPD-FVVAITRFVLENGMVPVLIATGSE 334 (429)
T ss_pred CCEEEEEc------CHH-HHHHHHHHHHHCCCEEEEEEeCCC
Confidence 45676543 444 556899999999999976665533
No 174
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=58.17 E-value=46 Score=29.27 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=41.1
Q ss_pred HHHHHHHHHHCCCeEEEEEeecCCCccccc-ccCCceeEEEeCCcccchhhhhHHHH-HHHHHHHHHHHHHHHhcCCCcE
Q 046633 27 IVDAAVELVSHGHNVHVFTAHHDKRRCFEE-TVNGTFPVTVYGDFLPRHFFYRLHAL-CAYLRCLFVALCVLLRSSSYDV 104 (176)
Q Consensus 27 vvdlA~~l~~~Gh~V~l~T~~~d~~hcF~E-t~~G~l~V~v~Gd~lPr~i~gr~~al-cA~lR~l~~~~~~~~~~~~~DV 104 (176)
+--|+++|. .++||+++....+.+.|=.. |....+.+....+ +..++ -.---++++++..++.+.+||+
T Consensus 16 i~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~--------~~~av~GTPaDCV~lal~~l~~~~~pDL 86 (252)
T COG0496 16 IRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDN--------GAYAVNGTPADCVILGLNELLKEPRPDL 86 (252)
T ss_pred HHHHHHHHh-hCCCEEEEccCCCCcccccccccccCceeeEecc--------ceEEecCChHHHHHHHHHHhccCCCCCE
Confidence 446778888 89999999998776654211 1111233333332 00000 1123456677776656677999
Q ss_pred EEE
Q 046633 105 IIA 107 (176)
Q Consensus 105 vi~ 107 (176)
|+.
T Consensus 87 VvS 89 (252)
T COG0496 87 VVS 89 (252)
T ss_pred EEe
Confidence 993
No 175
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=58.16 E-value=15 Score=32.65 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=27.6
Q ss_pred EEeCCCCCCchHH--HHHHHHHHHHHCCCeEEEEEe
Q 046633 13 IIHPDLGIGGAER--LIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 13 ~~hpdLgiGGAER--lvvdlA~~l~~~Gh~V~l~T~ 46 (176)
+..=++..||+=+ ++.-+|+.|+++|+.|-+++-
T Consensus 31 IsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSR 66 (311)
T TIGR00682 31 VIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSR 66 (311)
T ss_pred EEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECC
Confidence 5667776676654 788999999999999999884
No 176
>PRK09492 treR trehalose repressor; Provisional
Probab=58.05 E-value=32 Score=28.61 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=34.5
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
+...|+++.|++...-..+++-.+..++.++|+++.+..+..|+
T Consensus 61 ~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~ 104 (315)
T PRK09492 61 SDKVVGIIVSRLDSLSENQAVRTMLPAFYEQGYDPIIMESQFSP 104 (315)
T ss_pred CCCeEEEEecCCcCcccHHHHHHHHHHHHHcCCeEEEEecCCCh
Confidence 34579999999876666777878888899999999887765443
No 177
>PRK05246 glutathione synthetase; Provisional
Probab=57.77 E-value=15 Score=31.94 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=31.0
Q ss_pred CceEEEEeCCC-CCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDL-GIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdL-giGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.|||+|++.++ ...-..--...++.+-+++||+|.+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~ 41 (316)
T PRK05246 1 MMKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPD 41 (316)
T ss_pred CceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehh
Confidence 37999999876 33444455667899999999999998865
No 178
>PRK09004 FMN-binding protein MioC; Provisional
Probab=57.72 E-value=22 Score=27.80 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=28.3
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
||.++--+ ..|-||+++-.++..+.++|++|.++-
T Consensus 3 ~i~I~ygS-~tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 3 DITLISGS-TLGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred eEEEEEEc-CchHHHHHHHHHHHHHHHcCCceEEec
Confidence 56655333 379999999999999999999998764
No 179
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=57.40 E-value=48 Score=28.34 Aligned_cols=43 Identities=26% Similarity=0.220 Sum_probs=37.0
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCC
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKR 51 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~ 51 (176)
+-++-|+--.+..|=.|.++ ..+..++.+|-.|.++++..|..
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl-~r~~~~~~~g~~v~vfkp~iD~R 45 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELL-RRARRYKEAGMKVLVFKPAIDTR 45 (201)
T ss_pred eEEEEEEEccCcCcchHHHH-HHHHHHHHcCCeEEEEecccccc
Confidence 45677888888999999887 78889999999999999998865
No 180
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=57.09 E-value=13 Score=32.09 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=25.6
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
..|||+|+ ++|. .=..+|..|++.||+|+++...
T Consensus 3 ~~m~I~ii--G~G~-----~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAIL--GAGA-----WGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEE--CccH-----HHHHHHHHHHHCCCEEEEEeCC
Confidence 46899988 4444 3347899999999999988654
No 181
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=56.55 E-value=17 Score=27.19 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=27.2
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
.|-+|+++-.+|.++.++|++|.++.....
T Consensus 7 tG~te~~A~~ia~~l~~~g~~~~~~~~~~~ 36 (143)
T PF00258_consen 7 TGNTEKMAEAIAEGLRERGVEVRVVDLDDF 36 (143)
T ss_dssp SSHHHHHHHHHHHHHHHTTSEEEEEEGGGS
T ss_pred chhHHHHHHHHHHHHHHcCCceeeechhhh
Confidence 699999999999999999999999987643
No 182
>PLN02204 diacylglycerol kinase
Probab=56.48 E-value=23 Score=34.79 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=37.3
Q ss_pred Cce-EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccc
Q 046633 8 KLN-VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFE 55 (176)
Q Consensus 8 ~~k-I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~ 55 (176)
++| .+|+||--|-|.+.+..-.++..|.+.|.++.++.+. ..+|.++
T Consensus 159 ~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~-~aghA~d 206 (601)
T PLN02204 159 PKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTE-RAGHAFD 206 (601)
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEec-CcchHHH
Confidence 445 4578998888889998889999999999999887776 3467663
No 183
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=56.41 E-value=27 Score=29.36 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=27.9
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
+.|+|. .=|+=|=--.++++|.+|+++|++|-++=.
T Consensus 2 ~~iav~--~KGGVGKTT~~~nLA~~La~~G~rVLlID~ 37 (274)
T PRK13235 2 RKVAIY--GKGGIGKSTTTQNTVAGLAEMGKKVMVVGC 37 (274)
T ss_pred CEEEEe--CCCCccHHHHHHHHHHHHHHCCCcEEEEec
Confidence 467777 334445667899999999999999999844
No 184
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=56.36 E-value=1.3e+02 Score=26.07 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=27.3
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+++..+. +...-|=--++..++..+.++|+.|.++...
T Consensus 34 ~~~i~i~-G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 34 AHRVGIT-GTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4444444 4445566677888899999999999988754
No 185
>PRK12744 short chain dehydrogenase; Provisional
Probab=56.32 E-value=30 Score=28.09 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=26.4
Q ss_pred CccccCCCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 1 MEQRRSSKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 1 m~~~~~~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
|+.+..+.+++++. ||+.-+=..+|..|+++|++|.+++.
T Consensus 1 ~~~~~l~~k~vlIt------Ga~~gIG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 1 MADHSLKGKVVLIA------GGAKNLGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred CCCCCCCCcEEEEE------CCCchHHHHHHHHHHHCCCcEEEEec
Confidence 55444334444442 55555777899999999999777653
No 186
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=56.28 E-value=1.1e+02 Score=25.13 Aligned_cols=89 Identities=19% Similarity=0.246 Sum_probs=49.9
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEeecCC-----CcccccccCCceeEEEeCCcccchhhhhHHHHHHHHHHHHHHHHHH
Q 046633 22 GAERLIVDAAVELVSHGHNVHVFTAHHDK-----RRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAYLRCLFVALCVL 96 (176)
Q Consensus 22 GAERlvvdlA~~l~~~Gh~V~l~T~~~d~-----~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~lR~l~~~~~~~ 96 (176)
|--..+.-+|.+.+.+|+.|.++=.-... ...++.. .+++...|.-++-.--.+- .--+..+..|....-.
T Consensus 17 GKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~---~~~~~~~g~g~~~~~~~~~-~~~~~~~~~~~~a~~~ 92 (173)
T TIGR00708 17 GKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH---GVEFQVMGTGFTWETQNRE-ADTAIAKAAWQHAKEM 92 (173)
T ss_pred ChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc---CcEEEECCCCCeecCCCcH-HHHHHHHHHHHHHHHH
Confidence 66677778888888999999877443222 1112111 2666666652111000111 1113344555543434
Q ss_pred HhcCCCcEEEEcCCCccc
Q 046633 97 LRSSSYDVIIADQVSVVI 114 (176)
Q Consensus 97 ~~~~~~DVvi~Dqvs~~i 114 (176)
+.+.++|++|.|.+..++
T Consensus 93 l~~~~~DlvVLDEi~~A~ 110 (173)
T TIGR00708 93 LADPELDLVLLDELTYAL 110 (173)
T ss_pred HhcCCCCEEEehhhHHHH
Confidence 567899999999986544
No 187
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=56.17 E-value=5.8 Score=30.95 Aligned_cols=38 Identities=29% Similarity=0.401 Sum_probs=27.4
Q ss_pred cCCCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 5 RSSKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 5 ~~~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
++.+|||.|+ ||=|+-..++.+|++.||+|.-+.++..
T Consensus 7 ~~~~l~I~iI-------GaGrVG~~La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 7 QAARLKIGII-------GAGRVGTALARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp -----EEEEE-------CTSCCCCHHHHHHHHTTSEEEEESSCHH
T ss_pred CCCccEEEEE-------CCCHHHHHHHHHHHHCCCeEEEEEeCCc
Confidence 4566899988 4557778999999999999988877643
No 188
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=56.16 E-value=31 Score=28.77 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=27.6
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
.|++. .=|+=|---.++++|.+|+++|++|-++=.
T Consensus 4 iIav~--~KGGVGKTT~~~nLA~~la~~G~kVLliD~ 38 (270)
T PRK13185 4 VLAVY--GKGGIGKSTTSSNLSAAFAKLGKKVLQIGC 38 (270)
T ss_pred EEEEE--CCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 34554 456667788899999999999999998854
No 189
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=56.15 E-value=25 Score=24.98 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=36.0
Q ss_pred ceEEEEeCCC-CCCchHHHHHHHHHHHHHCCCeEEEEEeecC-CCcccccc
Q 046633 9 LNVAIIHPDL-GIGGAERLIVDAAVELVSHGHNVHVFTAHHD-KRRCFEET 57 (176)
Q Consensus 9 ~kI~~~hpdL-giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d-~~hcF~Et 57 (176)
+--+..+|+- |-|=|..++..+++.+.++|..+.+++...+ ++..++|.
T Consensus 24 i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~k 74 (86)
T PF08445_consen 24 IGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYEK 74 (86)
T ss_dssp EEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHHH
T ss_pred EEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH
Confidence 3445788887 7799999999999999999999988876533 23334443
No 190
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=54.62 E-value=1e+02 Score=27.93 Aligned_cols=97 Identities=19% Similarity=0.293 Sum_probs=61.6
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee-cCC---------CcccccccCCceeEEEeCCc--------
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH-HDK---------RRCFEETVNGTFPVTVYGDF-------- 70 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~-~d~---------~hcF~Et~~G~l~V~v~Gd~-------- 70 (176)
++|..+...=|.=|---+.+++|.+|+++|..|-+.-.. +.| ++--.+..+|-.+|.+..+|
T Consensus 47 k~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~gfL 126 (300)
T KOG3022|consen 47 KHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMGFL 126 (300)
T ss_pred ceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceeeecCCCceeeeecCCeEEEEeeee
Confidence 567777777777788899999999999999988776542 111 11112334444444444443
Q ss_pred ccc---hhhhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 046633 71 LPR---HFFYRLHALCAYLRCLFVALCVLLRSSSYDVIIADQ 109 (176)
Q Consensus 71 lPr---~i~gr~~alcA~lR~l~~~~~~~~~~~~~DVvi~Dq 109 (176)
++. ++-.|.--..+.|+|++-. ..|.+.|+.++|-
T Consensus 127 l~~~~~~vIwRGpkk~~~I~qflk~----vdwg~lDyLviDt 164 (300)
T KOG3022|consen 127 LKPRDDSVIWRGPKKNSMIKQFLKD----VDWGELDYLVIDT 164 (300)
T ss_pred cCCCCccceeechHHHHHHHHHHhc----CCCCCcCEEEEeC
Confidence 232 3445555566667766543 2467899999885
No 191
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=54.61 E-value=99 Score=26.97 Aligned_cols=31 Identities=16% Similarity=0.027 Sum_probs=21.9
Q ss_pred CCCcEEEEcCCCccchheecccCceeeccccccccc
Q 046633 100 SSYDVIIADQVSVVIPVLKLRSSTKVFMLNIARYMQ 135 (176)
Q Consensus 100 ~~~DVvi~Dqvs~~iP~l~l~~~~~vlf~~~~~YcH 135 (176)
...|+|+....+...++...+...+++| +||
T Consensus 100 ~~~~~i~~~~~P~~~~~~~~~~~~~~Vy-----d~~ 130 (373)
T cd04950 100 GFGRPILWYYTPYTLPVAALLQASLVVY-----DCV 130 (373)
T ss_pred CCCCcEEEEeCccHHHHHhhcCCCeEEE-----Ecc
Confidence 3456666566666677777667789999 887
No 192
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=54.59 E-value=33 Score=28.98 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=27.5
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
.+|+|. +=|+=|---.++++|.+|+++|+.|-++=.
T Consensus 2 ~~i~~~--gKGGVGKTT~a~nLA~~La~~G~rVLliD~ 37 (279)
T PRK13230 2 RKFCFY--GKGGIGKSTTVCNIAAALAESGKKVLVVGC 37 (279)
T ss_pred cEEEEE--CCCCCcHHHHHHHHHHHHHhCCCEEEEEee
Confidence 467777 434445666789999999999999998843
No 193
>PLN02778 3,5-epimerase/4-reductase
Probab=54.55 E-value=24 Score=30.23 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=28.0
Q ss_pred CccccC-CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEE
Q 046633 1 MEQRRS-SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVF 44 (176)
Q Consensus 1 m~~~~~-~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~ 44 (176)
|+++++ +.|||++ .||+=.+=-.++.+|.++||+|+..
T Consensus 1 ~~~~~~~~~~kiLV------tG~tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 1 SNGTAGSATLKFLI------YGKTGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCCCCCCCeEEE------ECCCCHHHHHHHHHHHhCCCEEEEe
Confidence 444443 4478776 4777778889999999999999754
No 194
>PLN02764 glycosyltransferase family protein
Probab=54.36 E-value=1.2e+02 Score=28.59 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=29.7
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
++| ++.|-++.| ==--++++|+.|+.+|..|+++|+...
T Consensus 6 ~Hv-vl~P~paqG-Hi~P~l~LAk~La~~g~~vT~~tt~~~ 44 (453)
T PLN02764 6 FHV-LMYPWFATG-HMTPFLFLANKLAEKGHTVTFLLPKKA 44 (453)
T ss_pred cEE-EEECCcccc-cHHHHHHHHHHHHhCCCEEEEEeCcch
Confidence 444 556777664 444567999999999999999998754
No 195
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=54.33 E-value=22 Score=31.13 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=30.6
Q ss_pred CceEEEEeCCCCCCchHHHHH-----HHHHHHHHCCCeEEEEEeecC
Q 046633 8 KLNVAIIHPDLGIGGAERLIV-----DAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvv-----dlA~~l~~~Gh~V~l~T~~~d 49 (176)
++||+++. |+-.+||-|. .++++|.+.||+|..+-...+
T Consensus 3 ~~~i~vl~---GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~ 46 (333)
T PRK01966 3 KMRVALLF---GGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITKD 46 (333)
T ss_pred CcEEEEEe---CCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECCC
Confidence 56899987 5566788776 678899999999987765533
No 196
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=54.11 E-value=30 Score=27.04 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=23.9
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||||.|+-.+ +.=..+|..|.+.||+|.++--.
T Consensus 1 m~~Ig~IGlG-------~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 1 MMKIGFIGLG-------NMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp -BEEEEE--S-------HHHHHHHHHHHHTTTEEEEEESS
T ss_pred CCEEEEEchH-------HHHHHHHHHHHhcCCeEEeeccc
Confidence 5788887443 45567899999999999988644
No 197
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=53.55 E-value=16 Score=29.75 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=22.9
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
|||+++ +|| .+=.-+|..|++.||+|+.+-...
T Consensus 1 M~I~Vi--GlG-----yvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVI--GLG-----YVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE----S-----TTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEE--CCC-----cchHHHHHHHHhCCCEEEEEeCCh
Confidence 678877 444 455689999999999999987654
No 198
>PRK07454 short chain dehydrogenase; Provisional
Probab=53.16 E-value=33 Score=27.36 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=23.1
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.||+-.+-..+|..|.++|++|.++...
T Consensus 12 tG~sg~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 12 TGASSGIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3667788889999999999999887654
No 199
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=52.81 E-value=29 Score=26.89 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=25.6
Q ss_pred CCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 17 DLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 17 dLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
.-|+=|---+.+++|..++++|+.|.++=.
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~ 36 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDA 36 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeC
Confidence 336668889999999999999999999854
No 200
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=52.67 E-value=36 Score=31.63 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=34.4
Q ss_pred CccccCCCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 1 MEQRRSSKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 1 m~~~~~~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|++++ ++++ +++.|-++.|=-== ++++|+.|+.+|..|+++|+...
T Consensus 1 ~~~~~-~~~H-VvlvPfpaqGHi~P-~l~LAk~La~~G~~VT~v~T~~n 46 (451)
T PLN02410 1 MEEKP-ARRR-VVLVPVPAQGHISP-MMQLAKTLHLKGFSITIAQTKFN 46 (451)
T ss_pred CCcCC-CCCE-EEEECCCccccHHH-HHHHHHHHHcCCCEEEEEeCccc
Confidence 66444 4445 56679988875443 45999999999999999998753
No 201
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=52.65 E-value=24 Score=29.77 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=23.0
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
|||+++ |.| .+-..+|..|++.||+|++++.
T Consensus 1 mkI~Ii----G~G---~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVV----GAG---AVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEE----CCC---HHHHHHHHHHHHCCCceEEEec
Confidence 577776 222 3445788899999999999986
No 202
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=52.51 E-value=41 Score=30.23 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=28.2
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
+.||..+. .-|.=|---+..++|.+|+++|++|.++-.
T Consensus 30 ~~~ii~v~-gkgG~GKSt~a~nLa~~la~~g~rVllid~ 67 (329)
T cd02033 30 KTQIIAIY-GKGGIGKSFTLANLSYMMAQQGKRVLLIGC 67 (329)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 34454444 455567777889999999999999998844
No 203
>PRK11670 antiporter inner membrane protein; Provisional
Probab=52.48 E-value=38 Score=30.63 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=33.7
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
+++||.-+-..-|+=|---+.+++|.+|+++|++|-++=.
T Consensus 105 ~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~ 144 (369)
T PRK11670 105 GVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDA 144 (369)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 3467777777777778899999999999999999998854
No 204
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=51.99 E-value=24 Score=28.79 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=28.4
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
||++...+ ..||-+. .++...|+++|++|.++.+..
T Consensus 2 ~I~lgvtG--s~~a~~~-~~ll~~L~~~g~~V~vi~T~~ 37 (177)
T TIGR02113 2 KILLAVTG--SIAAYKA-ADLTSQLTKLGYDVTVLMTQA 37 (177)
T ss_pred EEEEEEcC--HHHHHHH-HHHHHHHHHCCCEEEEEEChH
Confidence 67777665 6667655 499999999999998888764
No 205
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=51.96 E-value=42 Score=28.10 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=33.9
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
...|+++.|++...--.+++-.+...+.++|+++.+..+..++
T Consensus 59 ~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~ 101 (311)
T TIGR02405 59 DKVVAVIVSRLDSPSENLAVSGMLPVFYTAGYDPIIMESQFSP 101 (311)
T ss_pred CCEEEEEeCCcccccHHHHHHHHHHHHHHCCCeEEEecCCCCh
Confidence 3469999999766666677778888899999999888765544
No 206
>PHA02518 ParA-like protein; Provisional
Probab=51.93 E-value=41 Score=26.41 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=28.5
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
|+|..+- |+=|---+.+++|.+|+++|+.|.++-..
T Consensus 3 i~v~~~K-GGvGKTT~a~~la~~la~~g~~vlliD~D 38 (211)
T PHA02518 3 IAVLNQK-GGAGKTTVATNLASWLHADGHKVLLVDLD 38 (211)
T ss_pred EEEEcCC-CCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4555544 55677888999999999999999988664
No 207
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=51.21 E-value=23 Score=32.55 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=32.0
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
++||++...+ ..||-+ +++++..|.+.|++|.++.+..
T Consensus 3 ~k~IllgiTG--Siaa~~-~~~ll~~L~~~g~~V~vv~T~~ 40 (390)
T TIGR00521 3 NKKILLGVTG--GIAAYK-TVELVRELVRQGAEVKVIMTEA 40 (390)
T ss_pred CCEEEEEEeC--HHHHHH-HHHHHHHHHhCCCEEEEEECHh
Confidence 5689998887 777866 7899999999999999888764
No 208
>PRK08105 flavodoxin; Provisional
Probab=49.74 E-value=35 Score=26.78 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=28.6
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
||.++=-+ ..|-||+++-.++..+.++|++|.+...
T Consensus 3 ~i~I~YgS-~tGnte~~A~~l~~~l~~~g~~~~~~~~ 38 (149)
T PRK08105 3 KVGIFVGT-VYGNALLVAEEAEAILTAQGHEVTLFED 38 (149)
T ss_pred eEEEEEEc-CchHHHHHHHHHHHHHHhCCCceEEech
Confidence 45544322 4799999999999999999999987764
No 209
>PRK00170 azoreductase; Reviewed
Probab=49.47 E-value=57 Score=25.83 Aligned_cols=40 Identities=13% Similarity=-0.050 Sum_probs=28.3
Q ss_pred CceEEEEeCCCCC--CchHHHHHHHHHHHHHC--CCeEEEEEee
Q 046633 8 KLNVAIIHPDLGI--GGAERLIVDAAVELVSH--GHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgi--GGAERlvvdlA~~l~~~--Gh~V~l~T~~ 47 (176)
||||+++.-+... |=..+++-.++.++.++ |++|+++-..
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~ 44 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLA 44 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 4788877665534 44455666677788888 9999888765
No 210
>PRK07577 short chain dehydrogenase; Provisional
Probab=49.39 E-value=37 Score=26.80 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=23.2
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||...+-..+|..|.++|++|.++...
T Consensus 10 G~s~~iG~~ia~~l~~~G~~v~~~~r~ 36 (234)
T PRK07577 10 GATKGIGLALSLRLANLGHQVIGIARS 36 (234)
T ss_pred CCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 777788889999999999999887654
No 211
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=48.66 E-value=57 Score=29.75 Aligned_cols=92 Identities=21% Similarity=0.329 Sum_probs=53.8
Q ss_pred ceEEEEeC---CCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccchhhhhHHHHHHH
Q 046633 9 LNVAIIHP---DLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAY 85 (176)
Q Consensus 9 ~kI~~~hp---dLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~ 85 (176)
|||+|+-- +.|.|=-=| ...+|+++.++|..+..+|..--+.- -.+..+|--.....++
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R-~l~LA~~l~k~~~~~~fl~k~~~e~~-~~~~~~~f~~~~~~~~---------------- 62 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMR-TLTLARELEKRGFACLFLTKQDIEAI-IHKVYEGFKVLEGRGN---------------- 62 (318)
T ss_pred CcEEEEecCCcccCcchhhh-HHHHHHHHHhcCceEEEecccchhhh-hhhhhhhccceeeecc----------------
Confidence 67777653 334444444 45899999999988888876531221 1122233111122221
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCccchheecc---cCceeec
Q 046633 86 LRCLFVALCVLLRSSSYDVIIADQVSVVIPVLKLR---SSTKVFM 127 (176)
Q Consensus 86 lR~l~~~~~~~~~~~~~DVvi~Dqvs~~iP~l~l~---~~~~vlf 127 (176)
. .+.+.++|++|.|......=.+++. +.+|+++
T Consensus 63 -----n----~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~ 98 (318)
T COG3980 63 -----N----LIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILI 98 (318)
T ss_pred -----c----ccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEE
Confidence 0 2356789999999987666667754 3456665
No 212
>PRK05723 flavodoxin; Provisional
Probab=48.60 E-value=35 Score=27.02 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=28.1
Q ss_pred ceEEEE-eCCCCCCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 9 LNVAII-HPDLGIGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 9 ~kI~~~-hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
|||.++ -.. .|-||+++-.+|..+.++|++|.++.
T Consensus 1 ~~i~I~ygS~--tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 1 MKVAILSGSV--YGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred CeEEEEEEcC--chHHHHHHHHHHHHHHHCCCceeecC
Confidence 466655 333 79999999999999999999997654
No 213
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=48.41 E-value=65 Score=22.75 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=31.2
Q ss_pred ceEEEEeCCCCCCch-HHHHHHHHHHHHHCC---CeEEEEEeecCCCccccc
Q 046633 9 LNVAIIHPDLGIGGA-ERLIVDAAVELVSHG---HNVHVFTAHHDKRRCFEE 56 (176)
Q Consensus 9 ~kI~~~hpdLgiGGA-ERlvvdlA~~l~~~G---h~V~l~T~~~d~~hcF~E 56 (176)
|||+++..+-..+-. .+....+++.....| ++|.++... +.-.++.+
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g-~gv~~~~~ 51 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHG-DGVKLALK 51 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-G-GGGGGGBT
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEc-hHHHHHHh
Confidence 577777765333333 688888999999999 999987755 44444443
No 214
>PRK04296 thymidine kinase; Provisional
Probab=48.28 E-value=1.4e+02 Score=23.93 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=26.3
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
+|.++--+.|.|=.. .+..+|.++..+|..|.++.+
T Consensus 3 ~i~litG~~GsGKTT-~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKST-ELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHH-HHHHHHHHHHHcCCeEEEEec
Confidence 466666666777664 555888888889999998843
No 215
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=47.83 E-value=37 Score=27.58 Aligned_cols=38 Identities=11% Similarity=-0.046 Sum_probs=31.1
Q ss_pred eEEEEeCC--CCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 10 NVAIIHPD--LGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpd--LgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||+++.|+ +...--++++--+.+.+++.|+++.+.++.
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~~gy~~~~~~~~ 40 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKELGVEVKYVESV 40 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHhcCceEEEEecC
Confidence 68888986 666778888888888899999999887665
No 216
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=47.63 E-value=33 Score=29.56 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEee-cCCCcccccccCC-----ceeEEEeCCcccchhhhhHHHHHHHHHHHHHHHHH
Q 046633 22 GAERLIVDAAVELVSHGHNVHVFTAH-HDKRRCFEETVNG-----TFPVTVYGDFLPRHFFYRLHALCAYLRCLFVALCV 95 (176)
Q Consensus 22 GAERlvvdlA~~l~~~Gh~V~l~T~~-~d~~hcF~Et~~G-----~l~V~v~Gd~lPr~i~gr~~alcA~lR~l~~~~~~ 95 (176)
|--.-+.+.|..++++|.||.+=-.+ |.... =.+...| ..++...|.++..- -+=++
T Consensus 17 GKTy~ML~ea~~l~~~G~DVViG~vethgR~e-t~~l~~gLe~iP~~~i~y~g~~~~E~-------------Dldai--- 79 (211)
T PF02702_consen 17 GKTYAMLQEAHRLKEQGVDVVIGYVETHGRPE-TEALLEGLEVIPRKKIEYRGRTLEEM-------------DLDAI--- 79 (211)
T ss_dssp SHHHHHHHHHHHHHHTT--EEEEE---TT-HH-HHHHHCTS-B---EEEEETTEEEEE---------------HHHH---
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEecCCCcHH-HHHHHcCCCcCCCeeEeeCCEecccC-------------CHHHH---
Confidence 44556779999999999999875443 22111 0112233 12244444333321 00112
Q ss_pred HHhcCCCcEEEEcCCCccch
Q 046633 96 LLRSSSYDVIIADQVSVVIP 115 (176)
Q Consensus 96 ~~~~~~~DVvi~Dqvs~~iP 115 (176)
...+|+||++|.++...|
T Consensus 80 --L~R~P~vvLVDELAHtN~ 97 (211)
T PF02702_consen 80 --LARRPQVVLVDELAHTNA 97 (211)
T ss_dssp --HHH--SEEEES-TT-B--
T ss_pred --HhcCCCEEEeCcccccCC
Confidence 234699999999997664
No 217
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=47.59 E-value=26 Score=30.11 Aligned_cols=30 Identities=30% Similarity=0.319 Sum_probs=28.1
Q ss_pred CCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 19 GIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 19 giGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
|.||==-++..+|..++++|..|.+-|+.|
T Consensus 6 G~gGKTtl~~~l~~~~~~~g~~v~~TTTT~ 35 (232)
T TIGR03172 6 GAGGKTSTMFWLAAEYRKEGYRVLVTTTTR 35 (232)
T ss_pred cCCcHHHHHHHHHHHHHHCCCeEEEECCcc
Confidence 679999999999999999999999999876
No 218
>PRK05868 hypothetical protein; Validated
Probab=47.34 E-value=25 Score=31.06 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=24.6
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|++|+++ +-|++| ..+|..|+++|++|+++-.+.+
T Consensus 1 ~~~V~Iv--GgG~aG-----l~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVS--GASVAG-----TAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEE--CCCHHH-----HHHHHHHHhCCCCEEEEcCCCC
Confidence 3567775 323444 3578889999999999986644
No 219
>PRK10566 esterase; Provisional
Probab=47.20 E-value=43 Score=26.78 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=24.5
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
-|+++|- .||.......++..|+++|+.|..+-..
T Consensus 29 ~vv~~HG---~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 63 (249)
T PRK10566 29 TVFFYHG---FTSSKLVYSYFAVALAQAGFRVIMPDAP 63 (249)
T ss_pred EEEEeCC---CCcccchHHHHHHHHHhCCCEEEEecCC
Confidence 4666663 3444445567999999999999877543
No 220
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=47.16 E-value=46 Score=27.17 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=31.6
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHC-CCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSH-GHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~-Gh~V~l~T~~ 47 (176)
+||+++.-+. -|-.|+++=.++.++.+. |++|.++-..
T Consensus 1 ~kilIiY~S~-~G~T~~lA~~ia~g~~~~~g~ev~~~~v~ 39 (197)
T TIGR01755 1 VKVLVLYYSM-YGHIETMARAVAEGAREVDGAEVVVKRVP 39 (197)
T ss_pred CeEEEEEeCC-CCHHHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 4788888776 689999998889999886 9999988753
No 221
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=46.88 E-value=63 Score=27.06 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=33.9
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
+...|+++.|++.----.+++-.+..++.++|+++.+.++..++
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~ 102 (327)
T TIGR02417 59 RSRTIGLVIPDLENYSYARIAKELEQQCREAGYQLLIACSDDNP 102 (327)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 34679999999766556667777778888999999988765443
No 222
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=46.73 E-value=1.5e+02 Score=26.79 Aligned_cols=123 Identities=18% Similarity=0.162 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHC--CCeEEEEEeecCCCcccccccCCceeEEEeCC-----------cccchhhhhHHHHHHHHHHHHHH
Q 046633 26 LIVDAAVELVSH--GHNVHVFTAHHDKRRCFEETVNGTFPVTVYGD-----------FLPRHFFYRLHALCAYLRCLFVA 92 (176)
Q Consensus 26 lvvdlA~~l~~~--Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd-----------~lPr~i~gr~~alcA~lR~l~~~ 92 (176)
.-...++.+++. |..|.-++...-|..-... -|-++|...|. .+|+. +|++.|..+-.
T Consensus 15 ~~~~~~~~~k~~~~G~kvvG~~c~y~P~Eii~A--aG~~Pv~l~g~~~~~~~~~a~~~lp~~-------~C~~~ks~~g~ 85 (380)
T TIGR02263 15 LDFTAAREWKAADPGRIVIAFLPVYAPREIIHA--AGGLPLGIFGGGDGLEVIHGDAFYQSY-------ICRIPRSTIEL 85 (380)
T ss_pred HHHHHhhHHHHhhCCCeEEEEECCCCcHHHHHh--CCCceEEeccCCCCCCccchhhhCCcc-------CCHHHHHHHHH
Confidence 334456677877 9999877766555321111 23344544442 23333 59999987754
Q ss_pred HHHHHhc--CCCcEEEEcCCCccchhe-ecc---cCceeeccccccccccchhhcccc-hhHHHHHHHHHHHHHHHHHhh
Q 046633 93 LCVLLRS--SSYDVIIADQVSVVIPVL-KLR---SSTKVFMLNIARYMQILELLLFEV-LFFLARYYSTVIFRICYWLNT 165 (176)
Q Consensus 93 ~~~~~~~--~~~DVvi~Dqvs~~iP~l-~l~---~~~~vlf~~~~~YcHFPd~Ll~~~-~~~lk~lYr~p~d~~Ee~t~~ 165 (176)
.+.. ..+|.++..+...+.-=+ +.+ .+.+-+| ++|.|..--.+. ...+++=++.-...||+.+..
T Consensus 86 ---~~~~~~~~~d~vv~~~tCD~~k~l~~~~~~~~~~~~~~-----~ldlP~~~~~~~~~~Y~~~el~~l~~~LE~~~G~ 157 (380)
T TIGR02263 86 ---GLSGRLDFVDGMLFPSICDVIRNLSGMWKLMFPGKGAR-----YFDLPHNFDDDLGGEFYTAELNELCEGLEHLSGK 157 (380)
T ss_pred ---HHhCCCCcccEEEEeccchhHHHHHHHHHHhCCCCcEE-----EEeCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 2332 346999887777763222 112 1223356 889997633332 557888888889999998754
No 223
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=46.44 E-value=34 Score=31.52 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=31.9
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+++||++...+ ..||- -+.++...|.+.|++|.++.+..
T Consensus 5 ~~k~IllgvTG--siaa~-k~~~lv~~L~~~g~~V~vv~T~~ 43 (399)
T PRK05579 5 AGKRIVLGVSG--GIAAY-KALELVRRLRKAGADVRVVMTEA 43 (399)
T ss_pred CCCeEEEEEeC--HHHHH-HHHHHHHHHHhCCCEEEEEECHh
Confidence 46789998887 56777 55799999999999999888764
No 224
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=46.34 E-value=40 Score=27.61 Aligned_cols=41 Identities=17% Similarity=0.082 Sum_probs=28.1
Q ss_pred CCCceEEEEeCCCCC-CchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 6 SSKLNVAIIHPDLGI-GGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 6 ~~~~kI~~~hpdLgi-GGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+...|++++..|=+. +|+.. ...+|..|++.|..|.-+..-
T Consensus 129 ~~v~kvvIllTDg~~~~~~~~-~~~~a~~l~~~GI~i~tVGiG 170 (193)
T cd01477 129 ENYKKVVIVFASDYNDEGSND-PRPIAARLKSTGIAIITVAFT 170 (193)
T ss_pred CCCCeEEEEEecCccCCCCCC-HHHHHHHHHHCCCEEEEEEeC
Confidence 345789999986322 33222 457899999999888777653
No 225
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=46.28 E-value=33 Score=31.49 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=29.5
Q ss_pred cCCCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 5 RSSKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 5 ~~~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
+.+.|||++ .||+=.+=-.++.+|.++||+|..+..
T Consensus 117 ~~~~mkILV------TGatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 117 GRKRLRIVV------TGGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred ccCCCEEEE------ECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 345688777 578888888999999999999998764
No 226
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.21 E-value=73 Score=28.11 Aligned_cols=39 Identities=21% Similarity=0.155 Sum_probs=29.8
Q ss_pred CCceEEEE-eCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 7 SKLNVAII-HPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 7 ~~~kI~~~-hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+++||+++ +| |-+-+...+-.++..|+++|++|.+....
T Consensus 2 ~~kkv~lI~n~--~~~~~~~~~~~i~~~L~~~g~~v~v~~~~ 41 (305)
T PRK02645 2 QLKQVIIAYKA--GSSQAKEAAERCAKQLEARGCKVLMGPSG 41 (305)
T ss_pred CcCEEEEEEeC--CCHHHHHHHHHHHHHHHHCCCEEEEecCc
Confidence 35667764 44 56777788888888999999999887654
No 227
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=46.13 E-value=35 Score=29.43 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=24.3
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+|||+|+ +.| .+=.-+|..|++.||+|+++...
T Consensus 2 ~mkI~Ii--G~G-----~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVL--GAG-----SIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEE--CCC-----HHHHHHHHHHHhcCCcEEEEecH
Confidence 4789887 333 23346889999999999998853
No 228
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=46.04 E-value=45 Score=26.91 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=22.5
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
.||+..+=..+|.+|.++|++|.+...
T Consensus 16 tGa~g~iG~~ia~~l~~~G~~V~~~~r 42 (255)
T PRK07523 16 TGSSQGIGYALAEGLAQAGAEVILNGR 42 (255)
T ss_pred ECCcchHHHHHHHHHHHcCCEEEEEeC
Confidence 477788888999999999999987643
No 229
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=46.02 E-value=38 Score=28.57 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=28.1
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHC--CCeEEEEEeec
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSH--GHNVHVFTAHH 48 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~--Gh~V~l~T~~~ 48 (176)
||++-.++ .|++=.-+++++..|++. |++|.++-+..
T Consensus 1 ~i~~~itG--s~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~ 39 (234)
T TIGR02700 1 RIGWGITG--AGHLLVESFQVMKELKREIEELRVSTFVSRA 39 (234)
T ss_pred CeEEEEeC--ccHhHHHHHHHHHHHHhhcCCCeEEEEEChh
Confidence 35554444 677766778999999999 99999887763
No 230
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=45.84 E-value=1.3e+02 Score=26.12 Aligned_cols=107 Identities=13% Similarity=0.080 Sum_probs=55.5
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHC--CCeEEEEEeecCCCcccccccCCcee-EEEeCCcccchhhhhHHHHH
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSH--GHNVHVFTAHHDKRRCFEETVNGTFP-VTVYGDFLPRHFFYRLHALC 83 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~--Gh~V~l~T~~~d~~hcF~Et~~G~l~-V~v~Gd~lPr~i~gr~~alc 83 (176)
++|||+++.++ ++|=+ -+..-+..+|+++ +.++++++... +..+-|..+. ++ |... ++.-.+....
T Consensus 4 ~~~~ILii~~~-~iGD~-vl~~P~l~~Lk~~~P~a~I~~l~~~~--~~~l~~~~P~-id~vi~~----~~~~~~~~~~-- 72 (352)
T PRK10422 4 PFRRILIIKMR-FHGDM-LLTTPVISSLKKNYPDAKIDVLLYQD--TIPILSENPE-INALYGI----KNKKAGASEK-- 72 (352)
T ss_pred CCceEEEEEec-ccCce-eeHHHHHHHHHHHCCCCeEEEEeccC--hHHHhccCCC-ceEEEEe----ccccccHHHH--
Confidence 46899999998 56543 3444667777775 78898888642 2223343332 43 3321 2110011111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEcCCCccchheeccc--Cceeec
Q 046633 84 AYLRCLFVALCVLLRSSSYDVIIADQVSVVIPVLKLRS--STKVFM 127 (176)
Q Consensus 84 A~lR~l~~~~~~~~~~~~~DVvi~Dqvs~~iP~l~l~~--~~~vlf 127 (176)
++.++..+ ..+++.+||++|.-|-+.---++.+++ +.+|-|
T Consensus 73 --~~~~~~l~-~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~rig~ 115 (352)
T PRK10422 73 --IKNFFSLI-KVLRANKYDLIVNLTDQWMVALLVRLLNARVKISQ 115 (352)
T ss_pred --HHHHHHHH-HHHhhCCCCEEEEcccchHHHHHHHHhCCCeEEee
Confidence 11112111 135678999999777543333444443 345555
No 231
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=45.33 E-value=57 Score=29.66 Aligned_cols=38 Identities=18% Similarity=0.035 Sum_probs=30.9
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
+++|.-+...=|+=|---.++++|.+|+++|+.|-++=
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID 142 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVE 142 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEc
Confidence 45666566665777888899999999999999998885
No 232
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=45.14 E-value=54 Score=27.47 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=26.7
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHH-CCCeEEEEE
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVS-HGHNVHVFT 45 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~-~Gh~V~l~T 45 (176)
.|+|. .=|+=|---.++|+|.+|++ +|++|-++=
T Consensus 4 vIav~--~KGGVGKTT~a~nLA~~La~~~G~rvLliD 38 (275)
T PRK13233 4 KIAIY--GKGGIGKSTTTQNTAAAMAYFHDKKVFIHG 38 (275)
T ss_pred EEEEE--cCCCCcHHHHHHHHHHHHHHhcCCeEEEec
Confidence 45565 45555788899999999998 599998883
No 233
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=44.94 E-value=40 Score=28.20 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEEee
Q 046633 25 RLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 25 RlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.+=..+|..|++.||+|++++.+
T Consensus 10 ~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 10 AIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred HHHHHHHHHHHhCCCeEEEEECC
Confidence 45567899999999999999853
No 234
>PLN02534 UDP-glycosyltransferase
Probab=44.81 E-value=1.7e+02 Score=27.72 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=29.1
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
=+++.|-++.|=. -=++++|+.|+.+|+.||++|+.+
T Consensus 10 Hvv~vPfpaqGHi-~P~l~LAk~La~~G~~vT~v~t~~ 46 (491)
T PLN02534 10 HFVLIPLMAQGHM-IPMIDMARLLAERGVIVSLVTTPQ 46 (491)
T ss_pred EEEEECCCCcchH-HHHHHHHHHHHhCCCeEEEEECCC
Confidence 3567788887633 335699999999999999999865
No 235
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=44.71 E-value=27 Score=33.17 Aligned_cols=97 Identities=21% Similarity=0.292 Sum_probs=60.4
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccc-cCCc-ee---EEEeCCcccchhhhhHHHHHHHH
Q 046633 12 AIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEET-VNGT-FP---VTVYGDFLPRHFFYRLHALCAYL 86 (176)
Q Consensus 12 ~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et-~~G~-l~---V~v~Gd~lPr~i~gr~~alcA~l 86 (176)
+++-|= |.|| ++.-.|.++++-|.+|.++-.+....|||.+. ..|. +. +.-..|=+--..-|
T Consensus 218 AI~vpV-GGGG---LiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg--------- 284 (457)
T KOG1250|consen 218 AIVVPV-GGGG---LIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVG--------- 284 (457)
T ss_pred eEEEec-CCch---hHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhh---------
Confidence 555554 4455 78899999999999999999999999999753 3341 11 22222211111111
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCccchheecccCcee
Q 046633 87 RCLFVALCVLLRSSSYDVIIADQVSVVIPVLKLRSSTKV 125 (176)
Q Consensus 87 R~l~~~~~~~~~~~~~DVvi~Dqvs~~iP~l~l~~~~~v 125 (176)
..++.. .+...-++++++.-..|.++++++-..|.
T Consensus 285 ---~~tf~~-a~~~~d~vvvV~~~ei~aaI~~l~edek~ 319 (457)
T KOG1250|consen 285 ---ENTFEL-AQKLVDRVVVVEDDEIAAAILRLFEDEKM 319 (457)
T ss_pred ---HHHHHH-HHhcCceEEEeccHHHHHHHHHHHHhhhh
Confidence 223332 23444567777777899999998755544
No 236
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.70 E-value=46 Score=27.34 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=29.9
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+|+++.|++....--.++-.+..++.+.|+++.+.+..
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~~~~~~~~ 39 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAIGWNLRILDGR 39 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHcCcEEEEECCC
Confidence 68889999877666677777778888899998887654
No 237
>PRK00211 sulfur relay protein TusC; Validated
Probab=44.69 E-value=59 Score=24.85 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=32.2
Q ss_pred CceEEEEeCCCCCCc-hHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGG-AERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGG-AERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
|+||+|+..+--.|. .=|=..|+|.+++..+++|.++-..
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~~~~v~vff~~ 41 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLATSAFTEDIGVFFID 41 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcccCCeeEEEEh
Confidence 467999988865666 5666788899999999999988766
No 238
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=44.59 E-value=62 Score=25.83 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=27.2
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
.||.+ +||.|-++-.++..|+++.-.+.++..++.
T Consensus 49 ~~ifl------lG~~~~~~~~~~~~l~~~yP~l~ivg~~~g 83 (172)
T PF03808_consen 49 KRIFL------LGGSEEVLEKAAANLRRRYPGLRIVGYHHG 83 (172)
T ss_pred CeEEE------EeCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45655 588999999999999998777877776643
No 239
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=43.82 E-value=53 Score=28.88 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=25.4
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
++|||+++ |.| ++...++.+++++|++|..+....
T Consensus 11 ~~~~ilIi----G~g---~~~~~~~~a~~~~G~~v~~~~~~~ 45 (395)
T PRK09288 11 SATRVMLL----GSG---ELGKEVAIEAQRLGVEVIAVDRYA 45 (395)
T ss_pred CCCEEEEE----CCC---HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34678874 444 355667888899999999888764
No 240
>PRK03094 hypothetical protein; Provisional
Probab=43.75 E-value=17 Score=26.83 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 24 ERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 24 ERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
|.=.-++..+|+++||+|.=+.+..
T Consensus 7 E~~Ls~i~~~L~~~GYeVv~l~~~~ 31 (80)
T PRK03094 7 EQSLTDVQQALKQKGYEVVQLRSEQ 31 (80)
T ss_pred ecCcHHHHHHHHHCCCEEEecCccc
Confidence 4456799999999999998665543
No 241
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=43.69 E-value=64 Score=29.44 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=31.8
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
++++|.-+-..=|+=|---.++++|.+|+++|+.|-++=.
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl 143 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEG 143 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 3456666666657778888999999999999999988863
No 242
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.68 E-value=46 Score=26.72 Aligned_cols=37 Identities=11% Similarity=0.019 Sum_probs=30.9
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
||+++.|++.-.--..++--+..++.++|+++.+...
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 37 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGP 37 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 7999999987777777777788888899999988753
No 243
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=43.52 E-value=73 Score=27.04 Aligned_cols=43 Identities=12% Similarity=0.082 Sum_probs=34.0
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
...|+++.|++...--..++-.+...+++.|+++.+..+..++
T Consensus 59 ~~~Igvi~~~~~~~f~~~l~~gi~~~~~~~gy~~~~~~~~~~~ 101 (346)
T PRK10401 59 SDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEA 101 (346)
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEcCCCCh
Confidence 3579999999877667777778888899999999887665443
No 244
>PRK05717 oxidoreductase; Validated
Probab=43.34 E-value=52 Score=26.64 Aligned_cols=26 Identities=23% Similarity=0.283 Sum_probs=21.9
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
.||+-.+=-.+|..|.++|++|.++.
T Consensus 16 tG~sg~IG~~~a~~l~~~g~~v~~~~ 41 (255)
T PRK05717 16 TGAARGIGLGIAAWLIAEGWQVVLAD 41 (255)
T ss_pred eCCcchHHHHHHHHHHHcCCEEEEEc
Confidence 46777778889999999999998874
No 245
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=43.20 E-value=44 Score=28.19 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=21.3
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
||+-.+-..+|.+|.++||+|+++.
T Consensus 7 GatG~iG~~l~~~L~~~g~~V~~~~ 31 (338)
T PRK10675 7 GGSGYIGSHTCVQLLQNGHDVVILD 31 (338)
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEe
Confidence 6666777888999999999999875
No 246
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=43.02 E-value=63 Score=27.16 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=29.3
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCc
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRR 52 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~h 52 (176)
||.-+--.=|+=|---+.+++|.+|+++|+.|.++=. |++.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~--DpQ~ 42 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEA--DENR 42 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeC--CCCC
Confidence 4443333335557788999999999999999988754 4444
No 247
>PRK12367 short chain dehydrogenase; Provisional
Probab=43.01 E-value=45 Score=27.72 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=20.6
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
||+-.+=-.+|.+|+++|++|.++..
T Consensus 21 Gas~gIG~ala~~l~~~G~~Vi~~~r 46 (245)
T PRK12367 21 GASGALGKALTKAFRAKGAKVIGLTH 46 (245)
T ss_pred cCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 55556667889999999999987654
No 248
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=42.70 E-value=1.1e+02 Score=26.32 Aligned_cols=101 Identities=18% Similarity=0.248 Sum_probs=51.7
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC-----CcccccccCCceeEEEeCCcccchhhhhH---HH
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK-----RRCFEETVNGTFPVTVYGDFLPRHFFYRL---HA 81 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~-----~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~---~a 81 (176)
++.++ ||.||---=+..+-++++++=-.-..+....|+ -.-|+ ...+..+..-. -+||+--=+. ..
T Consensus 40 ~~lVv---lGSGGHT~EMlrLl~~l~~~y~~r~yI~a~tD~mS~~k~~~F~-~~~a~~~a~~~--~ipRsReVgQS~ltS 113 (211)
T KOG3339|consen 40 STLVV---LGSGGHTGEMLRLLEALQDLYSPRSYIAADTDEMSEQKARSFE-LSLAHCKAKNY--EIPRSREVGQSWLTS 113 (211)
T ss_pred eEEEE---EcCCCcHHHHHHHHHHHHhhcCceEEEEecCchhhHHHHHhhh-ccccccchhhe--ecchhhhhhhhhhhh
Confidence 56655 578887666788889987653333444433332 11132 22222222111 1666522111 22
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEcCCCccchhe
Q 046633 82 LCAYLRCLFVALCVLLRSSSYDVIIADQVSVVIPVL 117 (176)
Q Consensus 82 lcA~lR~l~~~~~~~~~~~~~DVvi~Dqvs~~iP~l 117 (176)
+++.+--++.++. .+.+-+||+|++.--..|+|+.
T Consensus 114 v~Tti~all~s~~-lv~RirPdlil~NGPGTCv~i~ 148 (211)
T KOG3339|consen 114 VFTTIWALLQSFV-LVWRIRPDLILCNGPGTCVPIC 148 (211)
T ss_pred HHHHHHHHHHHhe-EEEecCCCEEEECCCCcEeHHH
Confidence 2222222222322 2245679999988878999984
No 249
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=42.68 E-value=61 Score=27.24 Aligned_cols=43 Identities=9% Similarity=0.050 Sum_probs=33.4
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
...|+++.|++...--..++-.+..++.++|+++.+.....++
T Consensus 63 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~ 105 (331)
T PRK14987 63 SRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKP 105 (331)
T ss_pred CCEEEEEeCCCcchhHHHHHHHHHHHHHHCCCEEEEecCCCCH
Confidence 4579999999766666677777888889999999887655443
No 250
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.50 E-value=50 Score=29.62 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=24.3
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.++|+++ |+|+ .-..+|..|+++|++|+++...
T Consensus 5 ~k~v~ii----G~g~---~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVV----GAGV---SGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCEEEEE----CCCH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 4567665 5555 3347999999999999988654
No 251
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=42.41 E-value=53 Score=25.75 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=21.1
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.||.-.+-..++..|.++||+|.++...
T Consensus 11 tGasg~iG~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 11 TGASRGIGRAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred ECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3556667778899999999998666543
No 252
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=42.39 E-value=48 Score=28.10 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=24.0
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||||+|+= .| ..=..+|..|++.||+|+++...
T Consensus 1 mmkI~iiG----~G---~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLG----AG---SWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEEC----CC---HHHHHHHHHHHhCCCEEEEEECC
Confidence 46888872 22 24456788899999999988754
No 253
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=42.19 E-value=1.7e+02 Score=27.73 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=28.2
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHH-HCCCeEEEEEeecC
Q 046633 12 AIIHPDLGIGGAERLIVDAAVELV-SHGHNVHVFTAHHD 49 (176)
Q Consensus 12 ~~~hpdLgiGGAERlvvdlA~~l~-~~Gh~V~l~T~~~d 49 (176)
+++.|-.+.|=. -=++++|+.|+ ++|+.|+++++.+.
T Consensus 8 Vvl~P~paqGHi-~P~l~LAk~La~~~g~~vT~v~t~~n 45 (481)
T PLN02992 8 AAMFSSPGMGHV-IPVIELGKRLSANHGFHVTVFVLETD 45 (481)
T ss_pred EEEeCCcccchH-HHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 466688776633 23569999998 78999999998864
No 254
>PLN02572 UDP-sulfoquinovose synthase
Probab=42.17 E-value=43 Score=30.70 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=27.0
Q ss_pred cCCCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 5 RSSKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 5 ~~~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
+.++|||++ .||+=.+=..++.+|.++|++|.++-
T Consensus 44 ~~~~k~VLV------TGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 44 SSKKKKVMV------IGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred cccCCEEEE------ECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 445677654 47777788889999999999999863
No 255
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=41.97 E-value=38 Score=28.08 Aligned_cols=39 Identities=13% Similarity=-0.005 Sum_probs=29.0
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHH-CCCeEEEEEeecC
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVS-HGHNVHVFTAHHD 49 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~-~Gh~V~l~T~~~d 49 (176)
|+||++-..+ ..||-+ ..+++..|.+ .|++|.++.+...
T Consensus 1 ~k~IllgVTG--siaa~k-a~~l~~~L~k~~g~~V~vv~T~~A 40 (185)
T PRK06029 1 MKRLIVGISG--ASGAIY-GVRLLQVLRDVGEIETHLVISQAA 40 (185)
T ss_pred CCEEEEEEEC--HHHHHH-HHHHHHHHHhhcCCeEEEEECHHH
Confidence 3578877765 334544 7799999999 5999999887643
No 256
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=41.94 E-value=1.2e+02 Score=23.18 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 22 GAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 22 GAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
|-.-++...+.+.++.|..|.+++...++
T Consensus 11 GKT~l~~~~~~~~~~~g~~v~~~s~e~~~ 39 (187)
T cd01124 11 GKTTFALQFLYAGLARGEPGLYVTLEESP 39 (187)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEECCCCH
Confidence 67778888888888999999999987543
No 257
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=41.88 E-value=18 Score=30.99 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=24.8
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
+||+=.+=--+|.+|++.||+|++-++...
T Consensus 6 i~GtGniG~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 6 IIGTGNIGSALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred EeccChHHHHHHHHHHhCCCeEEEecCCCh
Confidence 566667777899999999999999977643
No 258
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=41.80 E-value=77 Score=26.48 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=31.5
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
...|+++.|++..---..+.-.+-.+++++|+++.+..+..+
T Consensus 61 ~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~ 102 (328)
T PRK11303 61 TRSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIACSDDQ 102 (328)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence 457999999976555566666677778889999988765533
No 259
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=41.72 E-value=1.1e+02 Score=26.44 Aligned_cols=97 Identities=12% Similarity=0.038 Sum_probs=50.0
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHC--CCeEEEEEeecCCCcccccccCCcee-EEEeCCcccchhhhhHHHHHHH
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSH--GHNVHVFTAHHDKRRCFEETVNGTFP-VTVYGDFLPRHFFYRLHALCAY 85 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~--Gh~V~l~T~~~d~~hcF~Et~~G~l~-V~v~Gd~lPr~i~gr~~alcA~ 85 (176)
|||+++.++ ++|=. -+..-+..+++++ +.++++++.. . ...+-|..+. ++ |... ++. ++...
T Consensus 1 mrILii~~~-~iGD~-il~tP~l~~Lk~~~P~a~I~~l~~~-~-~~~l~~~~P~-vd~vi~~----~~~--~~~~~---- 65 (348)
T PRK10916 1 MKILVIGPS-WVGDM-MMSQSLYRTLKARYPQAIIDVMAPA-W-CRPLLSRMPE-VNEAIPM----PLG--HGALE---- 65 (348)
T ss_pred CcEEEEccC-cccHH-HhHHHHHHHHHHHCCCCeEEEEech-h-hHHHHhcCCc-cCEEEec----ccc--cchhh----
Confidence 689999998 56633 3344566777774 8899999853 2 2223333332 33 3321 111 00000
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCccchheeccc
Q 046633 86 LRCLFVALCVLLRSSSYDVIIADQVSVVIPVLKLRS 121 (176)
Q Consensus 86 lR~l~~~~~~~~~~~~~DVvi~Dqvs~~iP~l~l~~ 121 (176)
++..+.. ...+++.+||++|.=|-+.---++.+++
T Consensus 66 ~~~~~~l-~~~lr~~~yD~vidl~~~~~s~~l~~~~ 100 (348)
T PRK10916 66 IGERRRL-GHSLREKRYDRAYVLPNSFKSALVPFFA 100 (348)
T ss_pred hHHHHHH-HHHHHhcCCCEEEECCCcHHHHHHHHHc
Confidence 1111111 1235677999999766544334444443
No 260
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=41.36 E-value=62 Score=24.50 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=23.7
Q ss_pred CCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 19 GIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 19 giGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
|.=|.-.+.+++|.+++++|++|.++=.
T Consensus 9 gG~GKtt~a~~la~~l~~~g~~vllvD~ 36 (179)
T cd02036 9 GGVGKTTTTANLGTALAQLGYKVVLIDA 36 (179)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 4447778999999999999999999943
No 261
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=41.35 E-value=61 Score=27.14 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=26.7
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
|++. +=|+=|.--+.+++|.+|+++|++|-++=.
T Consensus 3 ia~~--gKGGVGKTT~a~nLA~~La~~G~~VlliD~ 36 (275)
T TIGR01287 3 IAIY--GKGGIGKSTTTQNIAAALAEMGKKVMIVGC 36 (275)
T ss_pred eEEe--CCCcCcHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5554 444447788899999999999999998844
No 262
>PF09782 NDUF_B6: NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; InterPro: IPR019174 The NADH dehydrogenase [ubiquinone] complex performs the first stage of electron transfer from NADH to the respiratory chain. This entry represents an accessory subunit that is not thought to be involved in catalysis [].
Probab=41.27 E-value=24 Score=29.00 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=16.5
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 046633 143 EVLFFLARYYSTVIFRICY 161 (176)
Q Consensus 143 ~~~~~lk~lYr~p~d~~Ee 161 (176)
.+.+.++|+||.|+|.++.
T Consensus 53 ~~~nPirrfyr~pl~~l~~ 71 (156)
T PF09782_consen 53 ERMNPIRRFYRKPLDKLQN 71 (156)
T ss_pred hhcCHHHHHHHHHHHHHHH
Confidence 5678999999999998773
No 263
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=41.23 E-value=2.5e+02 Score=27.55 Aligned_cols=84 Identities=15% Similarity=0.082 Sum_probs=57.4
Q ss_pred CceEEEEeCCCC---CCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccc----cCCceeEEEeCCcccchhhhhHH
Q 046633 8 KLNVAIIHPDLG---IGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEET----VNGTFPVTVYGDFLPRHFFYRLH 80 (176)
Q Consensus 8 ~~kI~~~hpdLg---iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et----~~G~l~V~v~Gd~lPr~i~gr~~ 80 (176)
..|+..+-...- .=|---+.+++|.+|++.|..|.++--++.-+.+|.-. -.|-..|....| +--|+.|-+|
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~GkkvlliLR~Psl~~~fg~kggaaGGG~~qvlpme~-inLhftGD~h 132 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIALREPSLGPVFGIKGGAAGGGYAQVVPMED-INLHFTGDFH 132 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCcccccCCCCCcCCCCceeeecHhH-ccccccChHH
Confidence 456766665554 56888999999999999999999996666667777522 123223444433 4557888999
Q ss_pred HHHHHHHHHHHH
Q 046633 81 ALCAYLRCLFVA 92 (176)
Q Consensus 81 alcA~lR~l~~~ 92 (176)
|+-|.=-.+-++
T Consensus 133 Ait~A~NLlaA~ 144 (557)
T PRK13505 133 AITSANNLLAAL 144 (557)
T ss_pred HHHHHHHHHHHH
Confidence 987765544444
No 264
>PLN02562 UDP-glycosyltransferase
Probab=41.18 E-value=27 Score=32.27 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=29.1
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
=+++.|-.+.|=.== ++++|+.|+++|++|+++|+...
T Consensus 8 HVVlvPfPaqGHi~P-mL~LAk~Las~G~~VT~vtt~~~ 45 (448)
T PLN02562 8 KIILVPYPAQGHVTP-MLKLASAFLSRGFEPVVITPEFI 45 (448)
T ss_pred EEEEEcCccccCHHH-HHHHHHHHHhCCCEEEEEeCcch
Confidence 345668777764433 56999999999999999998753
No 265
>PRK13337 putative lipid kinase; Reviewed
Probab=40.87 E-value=71 Score=27.50 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=32.0
Q ss_pred ceEE-EEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCc
Q 046633 9 LNVA-IIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRR 52 (176)
Q Consensus 9 ~kI~-~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~h 52 (176)
+|+. ++.|.-|.|.+.+..-++...+.+.|.++.++.++ .++|
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~-~~~~ 45 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATT-GPGD 45 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEec-CCCC
Confidence 3544 67788676777788888888999999999887766 3344
No 266
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=40.67 E-value=70 Score=25.36 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=29.4
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
|+++.|+...--...++-.+..++.+.|+++.+..+..++
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~ 41 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYENGYQMLLMNTNFSI 41 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 6788888765555667777777788899999887765444
No 267
>PRK13695 putative NTPase; Provisional
Probab=40.55 E-value=1.7e+02 Score=22.66 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=24.3
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEE
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVH 42 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~ 42 (176)
|||++.-+. .-|-..++-.++..+++.|..+.
T Consensus 1 ~~i~ltG~~--G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 1 MKIGITGPP--GVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred CEEEEECCC--CCCHHHHHHHHHHHHHHCCCeEE
Confidence 678887665 55667777788888888898865
No 268
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=40.52 E-value=57 Score=26.34 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=20.4
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
.||+-.+=..+|.+|+++|++|.++.
T Consensus 14 tGas~gIG~~la~~l~~~G~~v~~~~ 39 (260)
T PRK12823 14 TGAAQGIGRGVALRAAAEGARVVLVD 39 (260)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 45556666789999999999998764
No 269
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=40.40 E-value=1.4e+02 Score=26.14 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=35.7
Q ss_pred HHHHHHHCCCeEEEEEeecCC---CcccccccCCceeEEEeCCcccchhhhhHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 046633 30 AAVELVSHGHNVHVFTAHHDK---RRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAYLRCLFVALCVLLRSSSYDVII 106 (176)
Q Consensus 30 lA~~l~~~Gh~V~l~T~~~d~---~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~lR~l~~~~~~~~~~~~~DVvi 106 (176)
++..+++.|++|+++....+. +|+..=.+ .+.++..++-. -.+-| +---++.+++..++...+||+|+
T Consensus 22 ~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~--pl~~~~~~~~~-yav~G------TPaDCV~lal~~~~~~~~pDlVv 92 (261)
T PRK13931 22 IATELAGPDGEVWTVAPAFEQSGVGHCISYTH--PMMIAELGPRR-FAAEG------SPADCVLAALYDVMKDAPPDLVL 92 (261)
T ss_pred HHHHhccCCCeEEEEeCCCCCCCCcccccCCC--CeEEEEeCCCe-EEEcC------chHHHHHHHHHHhcCCCCCCEEE
Confidence 333333345799999987664 45443222 36665554200 01112 22335556655443336799998
Q ss_pred E
Q 046633 107 A 107 (176)
Q Consensus 107 ~ 107 (176)
.
T Consensus 93 S 93 (261)
T PRK13931 93 S 93 (261)
T ss_pred E
Confidence 3
No 270
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=40.40 E-value=84 Score=26.34 Aligned_cols=40 Identities=25% Similarity=0.193 Sum_probs=29.1
Q ss_pred CceEEEEeCCCCC-CchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGI-GGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgi-GGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+..++++|...+. -|.-+....+|..|+++|+.|..+-..
T Consensus 26 ~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~ 66 (274)
T TIGR03100 26 TTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYR 66 (274)
T ss_pred CCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCC
Confidence 3468888853221 145566789999999999999887654
No 271
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=40.21 E-value=66 Score=27.90 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=26.6
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
|||++.= =|+=|=--.++++|.+|+++|+.|-++=.
T Consensus 1 m~ia~~g--KGGVGKTTta~nLA~~La~~G~rVLlID~ 36 (290)
T CHL00072 1 MKLAVYG--KGGIGKSTTSCNISIALARRGKKVLQIGC 36 (290)
T ss_pred CeEEEEC--CCCCcHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5666653 23334556789999999999999988854
No 272
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=40.17 E-value=40 Score=29.18 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=25.2
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.+|||+|+ +.|. .=.-+|..|++.||+|+++...
T Consensus 3 ~~m~I~iI--G~G~-----mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 3 HGMRVAVL--GAGA-----WGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCCeEEEE--CcCH-----HHHHHHHHHHHCCCeEEEEeCC
Confidence 36899987 3332 3346788999999999999764
No 273
>PRK07023 short chain dehydrogenase; Provisional
Probab=40.12 E-value=46 Score=26.66 Aligned_cols=26 Identities=23% Similarity=0.173 Sum_probs=20.9
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
||.-.+=..+|..|.++|++|.+++.
T Consensus 8 GasggiG~~ia~~l~~~G~~v~~~~r 33 (243)
T PRK07023 8 GHSRGLGAALAEQLLQPGIAVLGVAR 33 (243)
T ss_pred cCCcchHHHHHHHHHhCCCEEEEEec
Confidence 55556777899999999999988754
No 274
>PRK06924 short chain dehydrogenase; Provisional
Probab=40.04 E-value=56 Score=26.14 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=21.6
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||+-.+-..+|.+|+++|++|.+++..
T Consensus 8 GasggiG~~ia~~l~~~g~~V~~~~r~ 34 (251)
T PRK06924 8 GTSQGLGEAIANQLLEKGTHVISISRT 34 (251)
T ss_pred cCCchHHHHHHHHHHhcCCEEEEEeCC
Confidence 555577778899999999999887654
No 275
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=39.95 E-value=68 Score=30.77 Aligned_cols=34 Identities=38% Similarity=0.493 Sum_probs=24.3
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|||+++ |+|=| =..+|..|+++||+|+++-...-
T Consensus 1 ~rVai~----GaG~A---gL~~a~~La~~g~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIA----GAGLA---GLAAAYELADAGYDVTLYEARDR 34 (485)
T ss_pred CeEEEE----cccHH---HHHHHHHHHhCCCceEEEeccCc
Confidence 567765 33322 24689999999999999987743
No 276
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=39.89 E-value=61 Score=28.77 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=26.4
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
|..+..+=|+=|---+.+++|.+|+++|++|-++=..
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~D 38 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLD 38 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5566666566677889999999999999999988664
No 277
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=39.73 E-value=1.3e+02 Score=26.65 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=25.7
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEE
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHV 43 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l 43 (176)
.+..-+|-. ..|=.+.+..++++|+++++++.+
T Consensus 50 ~~~iW~Ha~--s~Ge~~~~~~l~~~l~~~~~~~~i 82 (425)
T PRK05749 50 GPLIWFHAV--SVGETRAAIPLIRALRKRYPDLPI 82 (425)
T ss_pred CCeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCcE
Confidence 356778876 667778899999999999876544
No 278
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=39.72 E-value=31 Score=28.93 Aligned_cols=28 Identities=39% Similarity=0.433 Sum_probs=24.0
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+-|+-|+=..+|..|.++||+|.++-..
T Consensus 5 IiG~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 5 IIGAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred EECCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 3478899999999999999999988644
No 279
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.38 E-value=55 Score=26.23 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=22.4
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.||.--+-..+|..|+++|++|.++...
T Consensus 8 tG~sg~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 8 TGGRRGIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 3566677788999999999999887643
No 280
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=39.16 E-value=84 Score=27.17 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=27.9
Q ss_pred eEEEEeCCCC-CCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 10 NVAIIHPDLG-IGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLg-iGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
-|+++|+--+ .+...+....+|..|+++|+.|..+-..
T Consensus 27 ~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~ 65 (266)
T TIGR03101 27 VVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLY 65 (266)
T ss_pred EEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCC
Confidence 4668886311 2345688889999999999999887654
No 281
>PRK08309 short chain dehydrogenase; Provisional
Probab=38.99 E-value=67 Score=25.92 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHCCCeEEEEEee
Q 046633 26 LIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 26 lvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.+-.++.+|.++|++|.+.+..
T Consensus 11 ~gg~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 11 MLKRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred HHHHHHHHHHHCcCEEEEEECC
Confidence 4456889999999999987644
No 282
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=38.98 E-value=62 Score=31.82 Aligned_cols=54 Identities=26% Similarity=0.376 Sum_probs=35.3
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcc-----cccccCCceeEEEeCCc
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRC-----FEETVNGTFPVTVYGDF 70 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hc-----F~Et~~G~l~V~v~Gd~ 70 (176)
|||+++--++ .=++..++|.+.||+|..+-+-+|++.- .+..+|| ++|.-.-.|
T Consensus 1 mkiaiigqs~-------fg~~vy~~lrk~gheiv~vftipdk~g~~d~l~~ea~kdg-vpv~k~srw 59 (881)
T KOG2452|consen 1 MKIAVIGQSL-------FGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDG-VPVFKYSRW 59 (881)
T ss_pred CeeEEechhh-------hhHHHHHHHHhcCceEEEEEEecCCCCCcCcccccccccC-cceechhhh
Confidence 6888875543 3368899999999999877766676431 2334555 555544333
No 283
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.78 E-value=2.8e+02 Score=26.20 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=27.7
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.-|+++-|. +-|=--.+..+|..+.++|+.|.+++..
T Consensus 207 ~ii~lvGpt--GvGKTTt~akLA~~l~~~g~~V~lItaD 243 (407)
T PRK12726 207 RIISLIGQT--GVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred eEEEEECCC--CCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 346677776 4455567778888888999999999874
No 284
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=38.73 E-value=63 Score=25.72 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=27.0
Q ss_pred ceEEEE--eCCCCCCchHHHHHHHHHHHHHCC-CeEEEEEee
Q 046633 9 LNVAII--HPDLGIGGAERLIVDAAVELVSHG-HNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~--hpdLgiGGAERlvvdlA~~l~~~G-h~V~l~T~~ 47 (176)
|||+++ ||+...+-.-++.-.++.++++.| ++|+++=..
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~ 42 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGPHEVEIRDLY 42 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCCCEEEEEECc
Confidence 566654 676423445667777889999999 999887555
No 285
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=38.58 E-value=53 Score=27.40 Aligned_cols=45 Identities=20% Similarity=0.148 Sum_probs=30.3
Q ss_pred HHHHHHHHHCCCeEEEEEeecC-CCcccccccCC-ceeEEEeCCccc
Q 046633 28 VDAAVELVSHGHNVHVFTAHHD-KRRCFEETVNG-TFPVTVYGDFLP 72 (176)
Q Consensus 28 vdlA~~l~~~Gh~V~l~T~~~d-~~hcF~Et~~G-~l~V~v~Gd~lP 72 (176)
..+|..|+++|++|+|+-.+.. .++|.....+. ...+..-+.+++
T Consensus 4 L~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~ 50 (450)
T PF01593_consen 4 LAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFF 50 (450)
T ss_dssp HHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEE
T ss_pred HHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCccccc
Confidence 3579999999999999998755 35566555551 266666555554
No 286
>PRK12827 short chain dehydrogenase; Provisional
Probab=38.43 E-value=66 Score=25.41 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=20.3
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
||.=-+-..+|..|.++|++|.++..
T Consensus 13 Gasg~iG~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 13 GGSGGLGRAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEcC
Confidence 55555667889999999999988653
No 287
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=38.35 E-value=79 Score=25.61 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=22.3
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||+--+=..+|++|+++|++|.++...
T Consensus 22 Gas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 22 GGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 666677788999999999999887643
No 288
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.32 E-value=87 Score=25.10 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=30.9
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
.|+++-|++...=-..+.-.+..+..+.|++|.++.+..+
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy~v~~~~~~~~ 40 (269)
T cd06293 1 TIGLVVPDIANPFFAELADAVEEEADARGLSLVLCATRNR 40 (269)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3788999977655666777777888899999988876543
No 289
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=38.29 E-value=65 Score=25.95 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=23.3
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.||+..+--.+|.+|.++|++|.++...
T Consensus 17 tGas~~IG~~la~~l~~~G~~v~~~~r~ 44 (256)
T PRK06124 17 TGSARGLGFEIARALAGAGAHVLVNGRN 44 (256)
T ss_pred ECCCchHHHHHHHHHHHcCCeEEEEeCC
Confidence 5777888889999999999999887543
No 290
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=38.16 E-value=59 Score=25.51 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=25.2
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
||+++.|+.....--.+.--+..++.++|+++.++....+
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ 40 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKELGVELIVLDAQND 40 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHhcCceEEEECCCCC
Confidence 5778888764444444554555556668888877766543
No 291
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=38.14 E-value=91 Score=26.41 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=30.4
Q ss_pred ceEE-EEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 9 LNVA-IIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 9 ~kI~-~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+|+. ++-|.-|.|.+.+..-++...|+++|.++.++.+.+
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~ 42 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWE 42 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 3555 455555667778888888889999999998887764
No 292
>PRK08226 short chain dehydrogenase; Provisional
Probab=38.09 E-value=65 Score=26.06 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=22.5
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
.||+..+-..+|.+|.++|++|.++..
T Consensus 12 tG~s~giG~~la~~l~~~G~~Vv~~~r 38 (263)
T PRK08226 12 TGALQGIGEGIARVFARHGANLILLDI 38 (263)
T ss_pred eCCCChHHHHHHHHHHHCCCEEEEecC
Confidence 477778888899999999999987754
No 293
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.09 E-value=86 Score=25.20 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=32.3
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
|+++.|+....--..+.-.+...++++|++|.+..+..++
T Consensus 2 Igvv~~~~~~~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~ 41 (269)
T cd06281 2 IGCLVSDITNPLLAQLFSGAEDRLRAAGYSLLIANSLNDP 41 (269)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCCEEEEEeCCCCh
Confidence 7889999887777778778888888999999888765444
No 294
>PRK10985 putative hydrolase; Provisional
Probab=38.00 E-value=78 Score=27.18 Aligned_cols=37 Identities=11% Similarity=-0.029 Sum_probs=25.3
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
-|+++| +++.+-.+..+..++..|.++|+.|..+-..
T Consensus 60 ~vll~H-G~~g~~~~~~~~~~~~~l~~~G~~v~~~d~r 96 (324)
T PRK10985 60 RLVLFH-GLEGSFNSPYAHGLLEAAQKRGWLGVVMHFR 96 (324)
T ss_pred EEEEeC-CCCCCCcCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 355555 5433323567778999999999999887543
No 295
>PLN02427 UDP-apiose/xylose synthase
Probab=38.00 E-value=62 Score=28.34 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=30.2
Q ss_pred cccCCCceEEEEeCCCCCCchHHHHHHHHHHHHHC-CCeEEEEEe
Q 046633 3 QRRSSKLNVAIIHPDLGIGGAERLIVDAAVELVSH-GHNVHVFTA 46 (176)
Q Consensus 3 ~~~~~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~-Gh~V~l~T~ 46 (176)
.++.++|||++ .||+=.+=..++..|.++ ||+|..+..
T Consensus 9 ~~~~~~~~VlV------TGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 9 GKPIKPLTICM------IGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CCcccCcEEEE------ECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 45667889776 577778888999999998 599987763
No 296
>PRK09482 flap endonuclease-like protein; Provisional
Probab=37.93 E-value=54 Score=28.65 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHCCCeEEEEEeecCCCcccc
Q 046633 23 AERLIVDAAVELVSHGHNVHVFTAHHDKRRCFE 55 (176)
Q Consensus 23 AERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~ 55 (176)
|+=++..+|..+++.|++|.|+|+..|-..+-.
T Consensus 108 ADDvIatla~~~~~~~~~v~I~S~DKDl~Qlv~ 140 (256)
T PRK09482 108 ADDLIATLAVKVAQAGHQATIVSTDKGYCQLLS 140 (256)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEECCCCccccCC
Confidence 568999999999999999999999888766543
No 297
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.88 E-value=92 Score=24.96 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=30.8
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|+++.|++...--..++-.+..++++.|+++.+..+..+
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~ 40 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQYGYTVLLCNTYRG 40 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 788899987766677777888888899999987766544
No 298
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=37.81 E-value=59 Score=23.43 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=25.5
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
..|..+-++++++.++++|..|..+|...+
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 457888888999999999999999997644
No 299
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=37.56 E-value=82 Score=25.98 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=29.9
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHH-HCCCeEEEEEeec
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELV-SHGHNVHVFTAHH 48 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~-~~Gh~V~l~T~~~ 48 (176)
|+|.-+.-.=|+=|==-..+++|.+|+ .+||+|-++=..+
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDp 42 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDP 42 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 455555555466677889999999999 6669999886543
No 300
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.53 E-value=66 Score=25.98 Aligned_cols=39 Identities=13% Similarity=-0.036 Sum_probs=30.7
Q ss_pred eEEEEeCCC-CCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 10 NVAIIHPDL-GIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 10 kI~~~hpdL-giGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
||+++-|++ ...--++++-.+-.+..+.|++|.+..+..
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~~~ 40 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGPET 40 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECCCC
Confidence 688888887 777777788778888888899988776553
No 301
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=37.50 E-value=71 Score=25.25 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=20.8
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.||.-.+=..++..|.++|++|.++...
T Consensus 12 tGasg~iG~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 12 TGAARGIGRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred cCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 3555566678889999999998776543
No 302
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=37.31 E-value=93 Score=26.99 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=33.2
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccc
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFE 55 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~ 55 (176)
|++.-+-..=|+-|=--.+..+|.+|+++|-.|.++ ..||++.+.
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lI--DaDpn~pl~ 45 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALI--DADPNQPLA 45 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE--eCCCCCcHH
Confidence 344444455466667778889999999999999988 457777654
No 303
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=37.26 E-value=68 Score=25.65 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=27.5
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
+|+++.|++...=...++--+..++++.|+++.++.+..+
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~ 40 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDAGGD 40 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECCCCC
Confidence 4777778766555566666677777888888877655433
No 304
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=37.13 E-value=92 Score=28.03 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=46.5
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCC-cee-EEEeCCcccchhhhhHHHHHHHHHHHHHHHHHHH
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNG-TFP-VTVYGDFLPRHFFYRLHALCAYLRCLFVALCVLL 97 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G-~l~-V~v~Gd~lPr~i~gr~~alcA~lR~l~~~~~~~~ 97 (176)
.-|--.+...++.+.+++|-.|.++..++....-+-+.. | .++ +.+. -|.+. .+.........
T Consensus 65 GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~l-Gvd~~~l~v~---~p~~~-----------eq~l~~~~~li 129 (321)
T TIGR02012 65 SSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKL-GVDIDNLLVS---QPDTG-----------EQALEIAETLV 129 (321)
T ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHc-CCCHHHeEEe---cCCCH-----------HHHHHHHHHHh
Confidence 346677888888889999999999887765443222211 2 111 1111 12211 11111112234
Q ss_pred hcCCCcEEEEcCCCccch
Q 046633 98 RSSSYDVIIADQVSVVIP 115 (176)
Q Consensus 98 ~~~~~DVvi~Dqvs~~iP 115 (176)
++..+|+|++|.+++-.|
T Consensus 130 ~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVP 147 (321)
T ss_pred hccCCcEEEEcchhhhcc
Confidence 667899999999987766
No 305
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=37.02 E-value=50 Score=24.41 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=21.0
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
|+|+|.- ||.-+.--.++..| ++|++|..+...
T Consensus 1 vv~~hG~---~~~~~~~~~~~~~l-~~~~~v~~~d~~ 33 (228)
T PF12697_consen 1 VVFLHGF---GGSSESWDPLAEAL-ARGYRVIAFDLP 33 (228)
T ss_dssp EEEE-ST---TTTGGGGHHHHHHH-HTTSEEEEEECT
T ss_pred eEEECCC---CCCHHHHHHHHHHH-hCCCEEEEEecC
Confidence 5667743 33335555688888 489999877654
No 306
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=36.85 E-value=91 Score=24.42 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=32.0
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
|.||.|.|-+ .-.-|+.+..++..--++|+.|.|++..
T Consensus 1 Mt~v~FY~l~--~~~~~~~~c~L~~ka~~~g~rv~I~~~d 38 (142)
T PRK05728 1 MTRADFYHLT--LSALEALLCELAEKALRAGWRVLVQCED 38 (142)
T ss_pred CCeEEEEecC--chhHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3589999873 6678999999999999999999999854
No 307
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=36.62 E-value=23 Score=25.95 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEEEeecCCCc
Q 046633 24 ERLIVDAAVELVSHGHNVHVFTAHHDKRR 52 (176)
Q Consensus 24 ERlvvdlA~~l~~~Gh~V~l~T~~~d~~h 52 (176)
|.=.-++..+|+++||+|.=.....|-.+
T Consensus 7 E~~Ls~v~~~L~~~GyeVv~l~~~~~~~~ 35 (80)
T PF03698_consen 7 EEGLSNVKEALREKGYEVVDLENEQDLQN 35 (80)
T ss_pred cCCchHHHHHHHHCCCEEEecCCccccCC
Confidence 33456899999999999987776643333
No 308
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=36.59 E-value=84 Score=22.43 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=25.7
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
|+++|-. ||-++.....+..|+++|+.|..+...
T Consensus 2 vv~~HG~---~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 2 VVLLHGW---GGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEECTT---TTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred EEEECCC---CCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 4555544 445666889999999999999988643
No 309
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=36.43 E-value=90 Score=25.81 Aligned_cols=43 Identities=21% Similarity=0.124 Sum_probs=35.4
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
...|+++-|++.-.--.+++-.+..+..+.|+++.+.....|+
T Consensus 26 ~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~ 68 (295)
T PRK10653 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNP 68 (295)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEEecCCCCH
Confidence 4579999999887778888888999999999999987665343
No 310
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=36.42 E-value=2.7e+02 Score=25.29 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=27.4
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCc
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRR 52 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~h 52 (176)
+.+|+++. |++++ +..++..|.+.|-+|..+.+..+...
T Consensus 298 ~gk~v~i~------~~~~~-~~~l~~~L~e~G~~v~~v~~~~~~~~ 336 (428)
T cd01965 298 GGKRVAIA------GDPDL-LLGLSRFLLEMGAEPVAAVTGTDNPP 336 (428)
T ss_pred cCCEEEEE------cChHH-HHHHHHHHHHcCCcceEEEEcCCCch
Confidence 34677765 45554 56899999999999987666544443
No 311
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=36.40 E-value=44 Score=26.64 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=22.0
Q ss_pred HHHHHHHHHCCCeEEEEEeecCC--Cccccccc
Q 046633 28 VDAAVELVSHGHNVHVFTAHHDK--RRCFEETV 58 (176)
Q Consensus 28 vdlA~~l~~~Gh~V~l~T~~~d~--~hcF~Et~ 58 (176)
+++-+.|.++||++.++|+...+ .||.+++.
T Consensus 79 ~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~ 111 (191)
T PF06941_consen 79 VEALKKLRDKGHEIVIITARPPEFPDHSAEEKR 111 (191)
T ss_dssp HHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHH
T ss_pred HHHHHHHHHcCCcEEEEEecCccccchHHHHHH
Confidence 34568888999999999988654 34666664
No 312
>PRK13236 nitrogenase reductase; Reviewed
Probab=36.09 E-value=85 Score=27.14 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=27.2
Q ss_pred CceEEEEeCCCCCC--chHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 8 KLNVAIIHPDLGIG--GAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 8 ~~kI~~~hpdLgiG--GAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
+||+.-+ +|-| |---+++|+|.+|+++|++|-++=.
T Consensus 5 ~~~~~~~---~GKGGVGKTt~a~NLA~~La~~G~rVLliD~ 42 (296)
T PRK13236 5 NIRQIAF---YGKGGIGKSTTSQNTLAAMAEMGQRILIVGC 42 (296)
T ss_pred CceEEEE---ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 3465555 4555 5566789999999999999999844
No 313
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=36.01 E-value=89 Score=27.20 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=28.6
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
.|+|. .=|+=|---+.+++|.+|+++|+.|-++=...
T Consensus 2 vIav~--gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dp 38 (296)
T TIGR02016 2 IIAIY--GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDP 38 (296)
T ss_pred EEEEE--CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecC
Confidence 46666 33455677889999999999999998886543
No 314
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.01 E-value=1e+02 Score=24.59 Aligned_cols=40 Identities=10% Similarity=0.118 Sum_probs=32.7
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
|+++.|++...=-..++-.+..++.+.|+++.+..+..++
T Consensus 2 igvi~p~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 41 (265)
T cd06285 2 IGVLVPRLTDTVMATMYEGIEEAAAERGYSTFVANTGDNP 41 (265)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 7889999877778888888888999999999877665444
No 315
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=35.96 E-value=1.1e+02 Score=25.11 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=28.1
Q ss_pred EEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 13 IIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 13 ~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+++++ .+.+++++-+.|.+|+++|+.|.=+..+.
T Consensus 4 v~~~~--~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~ 37 (159)
T PF10649_consen 4 VVYDD--GGDIDALLAAFAARLRARGVRVAGLVQRN 37 (159)
T ss_pred EEcCC--CCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 45554 68999999999999999999997666653
No 316
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=35.72 E-value=1.3e+02 Score=21.08 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=24.2
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
+.++++.+++ ..=++|. -.+|..|+++|+.|..+=
T Consensus 16 k~~v~i~HG~-~eh~~ry-~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGF-GEHSGRY-AHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCc-HHHHHHH-HHHHHHHHhCCCEEEEEC
Confidence 4566555554 2344564 489999999999998554
No 317
>PRK07109 short chain dehydrogenase; Provisional
Probab=35.71 E-value=81 Score=27.45 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=20.7
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||+--+=-.+|.+|+++|++|.++...
T Consensus 15 Gas~gIG~~la~~la~~G~~Vvl~~R~ 41 (334)
T PRK07109 15 GASAGVGRATARAFARRGAKVVLLARG 41 (334)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 455556667899999999999887643
No 318
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=35.67 E-value=1e+02 Score=24.45 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=28.8
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
|+++.|++..---..+.--+..+.++.|+++.+.....
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~ 39 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEAREAGYGVLLGDTRS 39 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 77888887766677777777788888888887766543
No 319
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=35.67 E-value=82 Score=26.49 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=29.2
Q ss_pred ceEEEEeCCCCC-CchHH-HHHHHHHHHHHCCCeEEEEEeec
Q 046633 9 LNVAIIHPDLGI-GGAER-LIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 9 ~kI~~~hpdLgi-GGAER-lvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+||+++..+-|- +|.|- =++.--..|.+.|++|++++...
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 589999875544 36653 24455678999999999999753
No 320
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=35.51 E-value=65 Score=25.72 Aligned_cols=26 Identities=19% Similarity=0.182 Sum_probs=20.2
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
.||+.-+-..+|..|+++|++|.+..
T Consensus 8 tGas~giG~~la~~l~~~g~~v~~~~ 33 (248)
T PRK06947 8 TGASRGIGRATAVLAAARGWSVGINY 33 (248)
T ss_pred eCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 35556677789999999999987654
No 321
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=35.43 E-value=52 Score=27.92 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=33.5
Q ss_pred cCCCcEEEEcCCCccch-heecccCceeeccccccccccchhhccc--chhHHHHHHHHHHHHH
Q 046633 99 SSSYDVIIADQVSVVIP-VLKLRSSTKVFMLNIARYMQILELLLFE--VLFFLARYYSTVIFRI 159 (176)
Q Consensus 99 ~~~~DVvi~Dqvs~~iP-~l~l~~~~~vlf~~~~~YcHFPd~Ll~~--~~~~lk~lYr~p~d~~ 159 (176)
..++|++|+|....... ++++..+.+.+. +.|-.+....+ ..+.+++.|+..+..+
T Consensus 97 ~~~~diii~~~~~~~~~~~~~~~~~~~~i~-----~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (372)
T cd04949 97 DTKPDVFILDRPTLDGQALLNMKKAAKVVV-----VLHSNHVSDNNDPVHSLINNFYEYVFENL 155 (372)
T ss_pred CCCCCEEEECCccccchhHHhccCCceEEE-----EEChHHhCCcccccccccchhhHHHHhCh
Confidence 37899999998654433 555555566566 67754433222 2345677777655544
No 322
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=35.23 E-value=55 Score=25.98 Aligned_cols=40 Identities=20% Similarity=0.113 Sum_probs=31.8
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
|+++.|++...--.++.--+..++++.|++|.+.+...++
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~ 41 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKELGYELTVLDAQNDA 41 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHcCceEEecCCCCCH
Confidence 7788898877777888888888888999999887665444
No 323
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=35.23 E-value=68 Score=27.70 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=23.6
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
|||+++ ||-.+=.-+|..|++.||+|+++...
T Consensus 1 MkI~Ii-------GaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISIL-------GAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEE-------CcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 456654 34456667899999999999988753
No 324
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.16 E-value=99 Score=24.77 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=30.7
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
|+++.|++..-=-+.++-.+..++++.|+++.+.+...++
T Consensus 2 Ig~i~p~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~ 41 (263)
T cd06280 2 VGLIVADIRNPFFTAVSRAVEDAAYRAGLRVILCNTDEDP 41 (263)
T ss_pred EEEEecccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 7788888766666777777788888899999888765443
No 325
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=35.09 E-value=58 Score=29.39 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=24.0
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
|||+|+ ++|.=| .-+|..|++.||+|+++....
T Consensus 1 mkI~vI--GlG~~G-----~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 1 MKIAVI--GLGYVG-----LPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred CEEEEE--CCCchh-----HHHHHHHHhcCCeEEEEECCH
Confidence 578887 444434 367888999999999986543
No 326
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=35.08 E-value=1.4e+02 Score=26.29 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=29.1
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
++++|+++ +.-+--.|+..+-++++.|+++|++|.+...
T Consensus 4 ~~~~v~iv-~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~ 42 (291)
T PRK02155 4 QFKTVALI-GRYQTPGIAEPLESLAAFLAKRGFEVVFEAD 42 (291)
T ss_pred cCCEEEEE-ecCCCHHHHHHHHHHHHHHHHCCCEEEEecc
Confidence 35567765 3334677888888999999999999888653
No 327
>PRK12829 short chain dehydrogenase; Provisional
Probab=35.00 E-value=75 Score=25.48 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=21.0
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
||.-.+-..+|+.|.++||+|.++..
T Consensus 18 Ga~g~iG~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 18 GGASGIGRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred CCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 55666778889999999999877764
No 328
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=34.96 E-value=33 Score=26.77 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 25 RLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 25 RlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
..-..+|..|+++||+|++++...+
T Consensus 9 ~~G~AlA~~la~~g~~V~l~~~~~~ 33 (157)
T PF01210_consen 9 NWGTALAALLADNGHEVTLWGRDEE 33 (157)
T ss_dssp HHHHHHHHHHHHCTEEEEEETSCHH
T ss_pred HHHHHHHHHHHHcCCEEEEEeccHH
Confidence 3445789999999999999997643
No 329
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=34.87 E-value=99 Score=24.92 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=26.3
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
|++. +=|+=|---+++++|.+|+++|++|-++=.
T Consensus 3 iav~--gKGGvGKTt~~~nLA~~la~~G~rvLliD~ 36 (212)
T cd02117 3 IAIY--GKGGIGKSTTSQNLSAALAEMGKKVLQVGC 36 (212)
T ss_pred EEEE--CCCcCcHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 5555 334446777889999999999999988843
No 330
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=34.79 E-value=66 Score=26.80 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=28.9
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
||++-.++ .-||=+-+.++.+.|.+.|++|.++.+...
T Consensus 2 ~I~lgITG--s~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 2 RIGFGLTG--SHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred EEEEEEec--HHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 56666655 556666667999999999999988877643
No 331
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=34.56 E-value=82 Score=29.34 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=48.6
Q ss_pred HHHHHHHHCCCeEEEEEee-cCCCcccccccC-CceeEEEeCCcccchhhhh-HHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 046633 29 DAAVELVSHGHNVHVFTAH-HDKRRCFEETVN-GTFPVTVYGDFLPRHFFYR-LHALCAYLRCLFVALCVLLRSSSYDVI 105 (176)
Q Consensus 29 dlA~~l~~~Gh~V~l~T~~-~d~~hcF~Et~~-G~l~V~v~Gd~lPr~i~gr-~~alcA~lR~l~~~~~~~~~~~~~DVv 105 (176)
.+|+.+++.|+.|-|+--+ |=.+.|+.|..+ -.+-|+.+|- |||-- -.-++-++++..-.. -...++=-+
T Consensus 15 V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGp----HIFHT~~~~Vwdyv~~F~e~~---~Y~hrVla~ 87 (374)
T COG0562 15 VIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGP----HIFHTDNKRVWDYVNQFTEFN---PYQHRVLAL 87 (374)
T ss_pred HHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccC----ceeecCchHHHHHHhhhhhhh---hhccceeEE
Confidence 5677888899999999874 557889999874 2399999995 44310 112455555443221 122345333
Q ss_pred EEcCCCccchh
Q 046633 106 IADQVSVVIPV 116 (176)
Q Consensus 106 i~Dqvs~~iP~ 116 (176)
..+|+ ..+|+
T Consensus 88 ~ng~~-~~lP~ 97 (374)
T COG0562 88 VNGQL-YPLPF 97 (374)
T ss_pred ECCee-eeccc
Confidence 44444 66776
No 332
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=34.54 E-value=71 Score=28.82 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCcee-EEEeCCcccchhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 046633 22 GAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFP-VTVYGDFLPRHFFYRLHALCAYLRCLFVALCVLLRSS 100 (176)
Q Consensus 22 GAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~-V~v~Gd~lPr~i~gr~~alcA~lR~l~~~~~~~~~~~ 100 (176)
|--.+...++.+.+++|-.|.++..++....-+-+...-.++ +.+. -|.+. .+.......++++.
T Consensus 67 GKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~---~p~~~-----------eq~l~i~~~li~s~ 132 (325)
T cd00983 67 GKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLIS---QPDTG-----------EQALEIADSLVRSG 132 (325)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheec---CCCCH-----------HHHHHHHHHHHhcc
Confidence 556788888888899999999998876543322221110011 1110 12221 11111112234667
Q ss_pred CCcEEEEcCCCccch
Q 046633 101 SYDVIIADQVSVVIP 115 (176)
Q Consensus 101 ~~DVvi~Dqvs~~iP 115 (176)
.+|+|++|.+++-.|
T Consensus 133 ~~~lIVIDSvaal~~ 147 (325)
T cd00983 133 AVDLIVVDSVAALVP 147 (325)
T ss_pred CCCEEEEcchHhhcc
Confidence 899999999987666
No 333
>PRK08462 biotin carboxylase; Validated
Probab=34.42 E-value=82 Score=28.53 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=29.3
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCC
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKR 51 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~ 51 (176)
.++||+++ |+.|- .+.++++.++.|++|+.+.++.|..
T Consensus 3 ~~k~ili~------~~g~~-~~~~~~~~~~~G~~~v~~~~~~d~~ 40 (445)
T PRK08462 3 EIKRILIA------NRGEI-ALRAIRTIQEMGKEAIAIYSTADKD 40 (445)
T ss_pred CCCEEEEE------CCcHH-HHHHHHHHHHcCCCEEEEechhhcC
Confidence 46688874 44454 7799999999999999888776664
No 334
>PLN02511 hydrolase
Probab=34.34 E-value=92 Score=27.85 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=28.2
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
..++++.|+++.|..+..+..++..+.++|+.|..+-..
T Consensus 100 ~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~r 138 (388)
T PLN02511 100 APVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSR 138 (388)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecC
Confidence 346666667665555667777888888999999877654
No 335
>PRK05993 short chain dehydrogenase; Provisional
Probab=34.28 E-value=88 Score=25.88 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=20.2
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
||+-.+=-.+|..|+++|++|.+...
T Consensus 11 GasggiG~~la~~l~~~G~~Vi~~~r 36 (277)
T PRK05993 11 GCSSGIGAYCARALQSDGWRVFATCR 36 (277)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 45556667789999999999988754
No 336
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=34.24 E-value=2.7e+02 Score=27.14 Aligned_cols=84 Identities=18% Similarity=0.126 Sum_probs=57.2
Q ss_pred CceEEEEeCCCC---CCchHHHHHHHHHHHHHCCCeEEEEEeecCCCccccccc----CCceeEEEeCCcccchhhhhHH
Q 046633 8 KLNVAIIHPDLG---IGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETV----NGTFPVTVYGDFLPRHFFYRLH 80 (176)
Q Consensus 8 ~~kI~~~hpdLg---iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~----~G~l~V~v~Gd~lPr~i~gr~~ 80 (176)
+.|+..+-..+- .=|---+.+++|.+|++.|..|.+.--++.-+.||.-.. .|-..|....| +--|+.|-+|
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~LR~PSlg~~fg~kggaaGGG~sqvlpme~-iNLhfTGD~h 115 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIACLREPSLGPTFGIKGGAAGGGYSQVIPMEE-INLHFTGDIH 115 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEecCCcCcccCCCCCCCCCChhhcccHhh-hcccccchHH
Confidence 456666655444 568889999999999999999998877778888886322 23223443333 4457778899
Q ss_pred HHHHHHHHHHHH
Q 046633 81 ALCAYLRCLFVA 92 (176)
Q Consensus 81 alcA~lR~l~~~ 92 (176)
|+-+.=--+-++
T Consensus 116 AItaA~NLlaA~ 127 (524)
T cd00477 116 AITAANNLLAAA 127 (524)
T ss_pred HHHHHHHHHHHH
Confidence 987665544443
No 337
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=34.11 E-value=80 Score=25.43 Aligned_cols=38 Identities=8% Similarity=-0.061 Sum_probs=27.6
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHC-CCeEEEEEee
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSH-GHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~-Gh~V~l~T~~ 47 (176)
+|+++-|++...--..++-.+...+++. |++|.+.+..
T Consensus 1 ~ig~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~ 39 (270)
T cd06308 1 VIGFSQCNLADPWRAAMNDEIQREASNYPDVELIIADAA 39 (270)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 4788888876655666777777777775 8888776554
No 338
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=34.03 E-value=1.2e+02 Score=23.51 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=24.3
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+..|+++|.. .|++....-.++..+++.|++|..+...
T Consensus 25 ~~~vl~~hG~--~g~~~~~~~~~~~~l~~~g~~vi~~d~~ 62 (288)
T TIGR01250 25 KIKLLLLHGG--PGMSHEYLENLRELLKEEGREVIMYDQL 62 (288)
T ss_pred CCeEEEEcCC--CCccHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 3468888876 3444444445566666679999877643
No 339
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=34.00 E-value=1e+02 Score=24.41 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=29.4
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|+++.|++....-..++-.+..++.+.|+++.++....+
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~ 40 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAAGYQLLLGNTGYS 40 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 678888877666777777777888888888877665443
No 340
>PRK09072 short chain dehydrogenase; Provisional
Probab=33.89 E-value=53 Score=26.73 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=22.8
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.||+..+-..+|..|.++|++|.++...
T Consensus 11 tG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 11 TGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 3666678889999999999999887643
No 341
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=33.88 E-value=83 Score=26.18 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=29.9
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||+++.|++...--+.+.-.+..+.++.|++|.+.++.
T Consensus 1 ~igvvvp~~~n~f~~~~~~gi~~~a~~~g~~v~~~~~~ 38 (295)
T TIGR02955 1 KLCALYPHLKDSYWLSINYGMVEQAKHLGVELKVLEAG 38 (295)
T ss_pred CeeEEecCCCcHHHHHHHHHHHHHHHHhCCEEEEEcCC
Confidence 58889999877667777777777788899999887654
No 342
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=33.87 E-value=1e+02 Score=22.49 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=28.6
Q ss_pred CCCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 6 SSKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 6 ~~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
....|++++..|-..-..+ -..+++..++++|.+|..+..-
T Consensus 101 ~~~~~~iiliTDG~~~~~~-~~~~~~~~~~~~~v~v~~i~~g 141 (161)
T cd01450 101 ENVPKVIIVLTDGRSDDGG-DPKEAAAKLKDEGIKVFVVGVG 141 (161)
T ss_pred CCCCeEEEEECCCCCCCCc-chHHHHHHHHHCCCEEEEEecc
Confidence 3556899999984332222 4678889999998888777653
No 343
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=33.86 E-value=93 Score=27.89 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=26.9
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
++|||++. ||+-.+=-.++.+|.++||+|..++-.
T Consensus 59 ~~~kVLVt------GatG~IG~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 59 KDVTVLVV------GATGYIGKFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred CCCEEEEE------CCCcHHHHHHHHHHHHCCCEEEEEEec
Confidence 45677663 666677778899999999999887754
No 344
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=33.73 E-value=1.4e+02 Score=24.91 Aligned_cols=43 Identities=7% Similarity=0.037 Sum_probs=32.3
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
+...|+++.|++.----..++-.+..++++.|+++.+..+..+
T Consensus 55 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~ 97 (327)
T PRK10423 55 QTRTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGD 97 (327)
T ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence 3467999999976555566777788888899999988765433
No 345
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=33.70 E-value=51 Score=25.87 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=23.4
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
.||.-.+-..+++.|.++|++|.+.+.+.
T Consensus 11 tG~sg~iG~~l~~~l~~~G~~v~~~~~~~ 39 (248)
T PRK05557 11 TGASRGIGRAIAERLAAQGANVVINYASS 39 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45666788899999999999998777553
No 346
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=33.41 E-value=61 Score=30.88 Aligned_cols=41 Identities=15% Similarity=0.329 Sum_probs=32.9
Q ss_pred ceEEEEeCCC----CCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 9 LNVAIIHPDL----GIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 9 ~kI~~~hpdL----giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|||.++-+.. -.||-=-++-.++++|+++|++|.++..+++
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~ 45 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYP 45 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCch
Confidence 4566555444 3488888889999999999999999998875
No 347
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=33.32 E-value=43 Score=25.51 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=24.5
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCe-EEEEEee
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHN-VHVFTAH 47 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~-V~l~T~~ 47 (176)
+.+|++++ |.||+=|.+ +.+|+++|.+ |+++.-.
T Consensus 11 ~~~~vlvi----GaGg~ar~v---~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVI----GAGGAARAV---AAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEE----SSSHHHHHH---HHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEE----CCHHHHHHH---HHHHHHcCCCEEEEEECC
Confidence 34677774 899999876 6677788988 6666533
No 348
>PF09318 DUF1975: Domain of unknown function (DUF1975); InterPro: IPR015397 This domain is functionally uncharacterised and found predominantly in the N-terminal region of various prokaryotic alpha-glucosyltransferases.
Probab=33.30 E-value=94 Score=24.63 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=33.2
Q ss_pred EEeCCCCC--CchHHHHHHHHHHHHHCCCeEEEEEeecCCC
Q 046633 13 IIHPDLGI--GGAERLIVDAAVELVSHGHNVHVFTAHHDKR 51 (176)
Q Consensus 13 ~~hpdLgi--GGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~ 51 (176)
|+...++. ||-|.-.+.=++-|.+.|.++.++|...+++
T Consensus 4 fi~~~i~~~~sGie~A~~~R~~lF~~~~~~~~ivt~~y~~~ 44 (203)
T PF09318_consen 4 FINNNIGFNNSGIEHAQLKRLKLFKENGIPAKIVTRDYNPN 44 (203)
T ss_pred EEecCcCcccchhHHHHHHHHHHHHHCCCCeEEEEeeCChh
Confidence 45555544 8999999999999999999999999998764
No 349
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.27 E-value=80 Score=25.19 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=22.5
Q ss_pred EEEEeCCC-CCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 11 VAIIHPDL-GIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 11 I~~~hpdL-giGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
|+++.|++ ...-.+.+.-.+..+..++|+++.++...
T Consensus 2 i~vi~p~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~ 39 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAEEDGVEVIVLDAN 39 (275)
T ss_pred eEEEecccCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 56666766 44555555555555666677777665543
No 350
>PRK09273 hypothetical protein; Provisional
Probab=33.26 E-value=76 Score=27.30 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=33.6
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
|||+++--.-..+=-+-+.-.+...|.++||+|.=+.++.
T Consensus 1 mkiali~e~sqa~kn~~i~~~L~~~L~~~G~eV~D~G~~~ 40 (211)
T PRK09273 1 MKIALINENSQAAKNAIIYEALKKVADPKGHEVFNYGMYD 40 (211)
T ss_pred CeEEeecccchhhhhHHHHHHHHHHHHHCCCEEEEeCCCC
Confidence 7899998887777777788888999999999998888763
No 351
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=33.18 E-value=2.3e+02 Score=23.32 Aligned_cols=31 Identities=3% Similarity=-0.059 Sum_probs=20.4
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCC--eEEEE
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGH--NVHVF 44 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh--~V~l~ 44 (176)
|||+++-.+ .......+.+++++.+. +|.++
T Consensus 1 ~riail~sg-----~gs~~~~ll~~~~~~~l~~~I~~v 33 (190)
T TIGR00639 1 KRIVVLISG-----NGSNLQAIIDACKEGKIPASVVLV 33 (190)
T ss_pred CeEEEEEcC-----CChhHHHHHHHHHcCCCCceEEEE
Confidence 578887653 33455678888888776 55554
No 352
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.96 E-value=92 Score=24.34 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 23 AERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 23 AERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.=-+=..+++.|.++||+|.+.+..
T Consensus 15 sg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 15 ARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CchHHHHHHHHHHHCCCeEEEEeCC
Confidence 3336678899999999999775543
No 353
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=32.88 E-value=77 Score=25.05 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=20.0
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
.||.-.+=..++.+|.++|++|.+..
T Consensus 7 tGa~g~iG~~l~~~l~~~g~~v~~~~ 32 (247)
T PRK09730 7 TGGSRGIGRATALLLAQEGYTVAVNY 32 (247)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 35555677778999999999998753
No 354
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=32.79 E-value=99 Score=27.85 Aligned_cols=36 Identities=22% Similarity=0.464 Sum_probs=26.7
Q ss_pred ceEEEEeCCCCCCchHH--HHHHHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAER--LIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAER--lvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+||.|+ .|-||.=+ .....|..+++.|..|.+++..
T Consensus 2 ~riv~f---~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStD 39 (322)
T COG0003 2 TRIVFF---TGKGGVGKTTIAAATAVKLAESGKKVLLVSTD 39 (322)
T ss_pred cEEEEE---ecCCcccHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 466666 36787777 7777779999999887777653
No 355
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=32.39 E-value=97 Score=26.62 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=27.1
Q ss_pred CceEEEEeCCCCCCchHHHH-----HHHHHHHHHCCCeEEEEEe
Q 046633 8 KLNVAIIHPDLGIGGAERLI-----VDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlv-----vdlA~~l~~~Gh~V~l~T~ 46 (176)
++||++++- ..-.||-+ -.++++|.+.||+|..+..
T Consensus 3 ~~~i~vl~g---g~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 3 NEKIVVLYG---GDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CcEEEEEeC---CCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 568999864 45566655 4678899999999987754
No 356
>PRK05866 short chain dehydrogenase; Provisional
Probab=32.22 E-value=1.1e+02 Score=25.98 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=21.1
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||+--+=-.+|..|+++|++|.++.-.
T Consensus 47 GasggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 47 GASSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 555567778899999999999887643
No 357
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=32.21 E-value=68 Score=25.89 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHCCCeEEEEEeecCCCccccc
Q 046633 23 AERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEE 56 (176)
Q Consensus 23 AERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~E 56 (176)
|.=++-.+|....++|.+|.|+|+-.|-..+-.|
T Consensus 110 ADDvIatla~~~~~~~~~v~IvS~DkD~~QLv~~ 143 (169)
T PF02739_consen 110 ADDVIATLAKKASEEGFEVIIVSGDKDLLQLVDE 143 (169)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEE-SSGGGGGGTCS
T ss_pred HHHHHHHHHhhhccCCCEEEEEcCCCCHHHhcCC
Confidence 6679999999999999999999998887665544
No 358
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=32.13 E-value=1.1e+02 Score=27.22 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=26.2
Q ss_pred CCCceEEEEeCCCCCCchHHHHHHHHHHHHHCCC---eEEEE
Q 046633 6 SSKLNVAIIHPDLGIGGAERLIVDAAVELVSHGH---NVHVF 44 (176)
Q Consensus 6 ~~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh---~V~l~ 44 (176)
+++|||++++-+.|. |=-+..-.++.+|.++|. +|.++
T Consensus 3 ~~~~~vlil~~~~G~-GH~~aA~al~~~~~~~~~~~~~~~~~ 43 (391)
T PRK13608 3 TQNKKILIITGSFGN-GHMQVTQSIVNQLNDMNLDHLSVIEH 43 (391)
T ss_pred CCCceEEEEECCCCc-hHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 357899999988644 445666667788887764 45544
No 359
>PLN02206 UDP-glucuronate decarboxylase
Probab=32.10 E-value=74 Score=29.29 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=27.9
Q ss_pred CCCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 6 SSKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 6 ~~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
.+.|||++ .||+=.+=-.++.+|.++||+|..+.
T Consensus 117 ~~~~kILV------TGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 117 RKGLRVVV------TGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred cCCCEEEE------ECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 35578776 47788888899999999999998874
No 360
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=31.99 E-value=85 Score=27.62 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=26.1
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
|||+|+ |.--..+...++|.+.||+|..+.+.+|+
T Consensus 1 mkIvf~-------Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~ 35 (313)
T TIGR00460 1 LRIVFF-------GTPTFSLPVLEELREDNFEVVGVVTQPDK 35 (313)
T ss_pred CEEEEE-------CCCHHHHHHHHHHHhCCCcEEEEEcCCCC
Confidence 688887 33346678888999999999876666553
No 361
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=31.94 E-value=1.2e+02 Score=22.07 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=23.7
Q ss_pred CCCchHHHHHHHHHHHHHC-CCeEEEEE
Q 046633 19 GIGGAERLIVDAAVELVSH-GHNVHVFT 45 (176)
Q Consensus 19 giGGAERlvvdlA~~l~~~-Gh~V~l~T 45 (176)
|.-|.--+.+++|.++++. |++|.++-
T Consensus 9 gg~gkt~~~~~la~~~~~~~~~~~~l~d 36 (106)
T cd03111 9 GGVGATTLAANLAVALAKEAGRRVLLVD 36 (106)
T ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 5667888899999999998 99999984
No 362
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=31.77 E-value=61 Score=26.59 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=24.4
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
||+=.+=-.++++|.++||+|..++...++
T Consensus 7 G~tGfiG~~l~~~L~~~g~~V~~~~r~~~~ 36 (314)
T COG0451 7 GGAGFIGSHLVERLLAAGHDVRGLDRLRDG 36 (314)
T ss_pred cCcccHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence 556666689999999999999999976543
No 363
>COG4195 Phage-related replication protein [General function prediction only]
Probab=31.65 E-value=57 Score=28.04 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=42.5
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHH------------HHCCCeE-EEEEeecCCCcccccccCCceeEEEeCC
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVEL------------VSHGHNV-HVFTAHHDKRRCFEETVNGTFPVTVYGD 69 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l------------~~~Gh~V-~l~T~~~d~~hcF~Et~~G~l~V~v~Gd 69 (176)
.-+++|+-|- .||-|.=+.++|.++ +++++.. +|-+.+.|+..|.+++.+-.+.|-..|-
T Consensus 36 ~S~v~ilapH--GG~IE~GvSELare~s~e~S~ylfegLk~~~ns~lHitS~~FDEp~al~~~~~h~~vis~HGy 108 (208)
T COG4195 36 GSRVLILAPH--GGGIEGGVSELAREFSDEYSGYLFEGLKSPDNSELHITSTRFDEPRALDLVSDHDYVISLHGY 108 (208)
T ss_pred CceEEEEecc--CCccCccHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccCcHHHHHHhccccEEEEeccc
Confidence 3578888887 777777666666554 4566666 5555578999999998877666655553
No 364
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=31.53 E-value=1.3e+02 Score=23.95 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=30.7
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCC
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKR 51 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~ 51 (176)
|+++.|++..-=-..++-.+..++++.|+++.+.....++.
T Consensus 2 i~~i~~~~~~~~~~~i~~gi~~~~~~~g~~~~~~~~~~~~~ 42 (260)
T cd06286 2 IGVVLPYINHPYFSQLVDGIEKAALKHGYKVVLLQTNYDKE 42 (260)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCChH
Confidence 78888987655566677777778889999998877655543
No 365
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=31.53 E-value=1.5e+02 Score=24.90 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=31.7
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
+...|+++.|++..---..++--+..+..++|+++.+.....+
T Consensus 63 ~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~~~~~~ 105 (342)
T PRK10014 63 QSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLQGGKD 105 (342)
T ss_pred CCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence 3457999999976555666666677888899999987655433
No 366
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=31.46 E-value=53 Score=25.62 Aligned_cols=24 Identities=4% Similarity=0.171 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHCCCeEEEEEeecC
Q 046633 26 LIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 26 lvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
=++++.+.|+++||.|+++|.+..
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~ 51 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNM 51 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCc
Confidence 345777888899999999998743
No 367
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=31.46 E-value=80 Score=25.37 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=27.4
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHC---CCeE--EEEEee
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSH---GHNV--HVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~---Gh~V--~l~T~~ 47 (176)
||+++-|++.......++-.+..+..+. |+++ .++...
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~ 43 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSAD 43 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCC
Confidence 6888888887777777777777777788 8844 444333
No 368
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.41 E-value=1.3e+02 Score=24.00 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=27.5
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
|+++.|++...=-..++--+..+++++|+++.++++..|+
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~gy~~~~~~~~~~~ 41 (265)
T cd06290 2 IGVLTQDFASPFYGRILKGMERGLNGSGYSPIIATGHWNQ 41 (265)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 7788888764444444545666778899999888766543
No 369
>TIGR03414 ABC_choline_bnd choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling (PubMed:16930487) vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins.
Probab=31.35 E-value=92 Score=26.99 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=39.4
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCCceeEEEeCCcccch
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNGTFPVTVYGDFLPRH 74 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr~ 74 (176)
.|.+-+++ --++.-+..-++..|.+.|++|.+... +..-+|....+|.+++.+ ..|+|.+
T Consensus 9 ~I~ig~~~--w~~~~~~~~i~~~iLE~~Gy~Ve~~~~--~~~~~~~al~~GdiD~~~-e~W~p~~ 68 (290)
T TIGR03414 9 TVRFADVG--WTDITATTALASVLLEGLGYQPKVTLL--SVPVTYAGLKDGDLDVFL-GNWMPAM 68 (290)
T ss_pred eEEEeeCC--cchHHHHHHHHHHHHHHcCCcceeEEc--cHHHHHHHHHcCCceEec-cccCCcC
Confidence 46676666 334443443344555568999998643 566678888888888876 3488863
No 370
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=31.28 E-value=61 Score=29.09 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=27.8
Q ss_pred EEEeCCCCCCchH--HHHHHHHHHHHHCCCeEEEEEee
Q 046633 12 AIIHPDLGIGGAE--RLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 12 ~~~hpdLgiGGAE--RlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
++..=++..||+= =++.-+|+.|+++|+.|-+++--
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRG 88 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRG 88 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCC
Confidence 4566677666654 47888999999999999998843
No 371
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=31.26 E-value=94 Score=23.31 Aligned_cols=33 Identities=9% Similarity=-0.069 Sum_probs=23.4
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
.|+++|. .||..+.--.++..|+ +|++|..+..
T Consensus 3 ~vv~~hG---~~~~~~~~~~~~~~L~-~~~~v~~~d~ 35 (251)
T TIGR03695 3 VLVFLHG---FLGSGADWQALIELLG-PHFRCLAIDL 35 (251)
T ss_pred EEEEEcC---CCCchhhHHHHHHHhc-ccCeEEEEcC
Confidence 3666663 4555555668888888 8999987764
No 372
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=31.02 E-value=3e+02 Score=22.53 Aligned_cols=44 Identities=23% Similarity=0.285 Sum_probs=30.6
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccc
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFE 55 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~ 55 (176)
-|+|+=|. +-|=--.+.-+|..++.+|..|.++|...-....++
T Consensus 3 vi~lvGpt--GvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~e 46 (196)
T PF00448_consen 3 VIALVGPT--GVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVE 46 (196)
T ss_dssp EEEEEEST--TSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHH
T ss_pred EEEEECCC--CCchHhHHHHHHHHHhhccccceeecCCCCCccHHH
Confidence 46677666 567777888999999999999999997544333344
No 373
>PRK08177 short chain dehydrogenase; Provisional
Probab=30.97 E-value=92 Score=24.70 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=20.4
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
||.--+--.+|+.|+++|++|.++....
T Consensus 8 G~sg~iG~~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 8 GASRGLGLGLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred CCCchHHHHHHHHHHhCCCEEEEEeCCC
Confidence 4444455568999999999998877543
No 374
>PRK05693 short chain dehydrogenase; Provisional
Probab=30.95 E-value=85 Score=25.73 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||+--+=..+|..|+++|++|.+.+..
T Consensus 8 GasggiG~~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 8 GCSSGIGRALADAFKAAGYEVWATARK 34 (274)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 444455567788899999999887643
No 375
>PRK07102 short chain dehydrogenase; Provisional
Probab=30.88 E-value=62 Score=25.89 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=23.4
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.||+-.+-..+|.+|.++|++|.++...
T Consensus 7 tGas~giG~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 7 IGATSDIARACARRYAAAGARLYLAARD 34 (243)
T ss_pred EcCCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4777788899999999999999877543
No 376
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=30.86 E-value=3.1e+02 Score=22.73 Aligned_cols=88 Identities=20% Similarity=0.083 Sum_probs=47.9
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCC--CeEEEEEeecCCCcccccccCCcee-EEEeCCcccchhhhhHHHHHHHH
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHG--HNVHVFTAHHDKRRCFEETVNGTFP-VTVYGDFLPRHFFYRLHALCAYL 86 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~G--h~V~l~T~~~d~~hcF~Et~~G~l~-V~v~Gd~lPr~i~gr~~alcA~l 86 (176)
||+++.++ ++|-.= +..-+..+++++. .+|+++|.. +- ..+.|..+. ++ |..... . ..++. +
T Consensus 1 kILii~~~-~iGD~i-~~~p~l~~Lk~~~P~~~I~~l~~~-~~-~~l~~~~p~-id~v~~~~~--~-~~~~~-------~ 65 (279)
T cd03789 1 RILVIRLS-WIGDVV-LATPLLRALKARYPDARITVLAPP-WF-APLLELMPE-VDRVIVLPK--K-HGKLG-------L 65 (279)
T ss_pred CEEEEecc-cHHHHH-HHHHHHHHHHHHCCCCEEEEEECh-hh-HHHHhcCCc-cCEEEEcCC--c-ccccc-------h
Confidence 68899998 777554 3446677788765 799999976 22 224444443 43 333211 0 00111 1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCcc
Q 046633 87 RCLFVALCVLLRSSSYDVIIADQVSVV 113 (176)
Q Consensus 87 R~l~~~~~~~~~~~~~DVvi~Dqvs~~ 113 (176)
+.++..+ ..+++.+||+++.-+.+.-
T Consensus 66 ~~~~~~~-~~l~~~~~D~vi~~~~~~~ 91 (279)
T cd03789 66 GARRRLA-RALRRRRYDLAIDLQGSLR 91 (279)
T ss_pred HHHHHHH-HHHhhcCCCEEEECCCccH
Confidence 1112221 1245678999997775443
No 377
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.80 E-value=89 Score=28.47 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=23.3
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
++||+++ |+|++=. .+|..|+++|++|+++-.
T Consensus 16 ~~~v~vi----G~G~~G~---~~A~~L~~~G~~V~~~d~ 47 (480)
T PRK01438 16 GLRVVVA----GLGVSGF---AAADALLELGARVTVVDD 47 (480)
T ss_pred CCEEEEE----CCCHHHH---HHHHHHHHCCCEEEEEeC
Confidence 4577775 6666443 468999999999998753
No 378
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=30.75 E-value=1.2e+02 Score=30.91 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=41.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccc-cccCCceeEEEeCCccc
Q 046633 16 PDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFE-ETVNGTFPVTVYGDFLP 72 (176)
Q Consensus 16 pdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~-Et~~G~l~V~v~Gd~lP 72 (176)
|.||.||-=|++.+....++..|.-.+=+.....-+- |+ +..|| -.+....+|++
T Consensus 99 a~LGnGGLGrLAacfldS~Atl~~P~~GyGirY~yG~-F~Q~I~dG-~Q~E~pd~Wl~ 154 (794)
T TIGR02093 99 AGLGNGGLGRLAACFLDSLATLGLPATGYGIRYEYGL-FKQKIVDG-WQVELPDDWLR 154 (794)
T ss_pred CCCCCCchHHHHHHHHHHHHhCCCCeEEEEeeecCCc-eEEEEECC-EEEEcCCCcCC
Confidence 7899999999999999999999998888888765544 44 34455 55555555644
No 379
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=30.72 E-value=85 Score=25.22 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=29.5
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||++++=-+ .-|-.|+++--+|..|.+ |++|.++-..
T Consensus 1 MkilIvY~S-~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~ 37 (177)
T PRK11104 1 MKTLILYSS-RDGQTRKIASYIASELKE-GIQCDVVNLH 37 (177)
T ss_pred CcEEEEEEC-CCChHHHHHHHHHHHhCC-CCeEEEEEhh
Confidence 466655444 579999999999999998 9999988765
No 380
>PRK06138 short chain dehydrogenase; Provisional
Probab=30.70 E-value=59 Score=25.88 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=23.6
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.||+-.+-..+|..|.++|++|.++...
T Consensus 11 tG~sg~iG~~la~~l~~~G~~v~~~~r~ 38 (252)
T PRK06138 11 TGAGSGIGRATAKLFAREGARVVVADRD 38 (252)
T ss_pred eCCCchHHHHHHHHHHHCCCeEEEecCC
Confidence 5788888899999999999999877543
No 381
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=30.66 E-value=1.5e+02 Score=24.25 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=28.5
Q ss_pred ceEEEEeCCCCCCchHHHHH-HHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAERLIV-DAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvv-dlA~~l~~~Gh~V~l~T~~ 47 (176)
|||+++--+...++--+-+. .+++.+.+.|++|+++-..
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~ 40 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQ 40 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 68999887776776555444 4556777799999988664
No 382
>PRK07236 hypothetical protein; Provisional
Probab=30.49 E-value=60 Score=28.43 Aligned_cols=36 Identities=31% Similarity=0.378 Sum_probs=26.1
Q ss_pred CCCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 6 SSKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 6 ~~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+++++|+++=- |++| ..+|..|++.|++|+++-...
T Consensus 4 ~~~~~ViIVGa--G~aG-----l~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGG--SLGG-----LFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCCeEEEECC--CHHH-----HHHHHHHHhCCCCEEEEecCC
Confidence 44578887722 2344 478999999999999998653
No 383
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=30.39 E-value=1.7e+02 Score=23.99 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=30.5
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+..+|+++.|++..-=-..+.-.+..++.+.|+++.+.....
T Consensus 34 ~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~ 75 (309)
T PRK11041 34 ESRTILVIVPDICDPFFSEIIRGIEVTAAEHGYLVLIGDCAH 75 (309)
T ss_pred CCcEEEEEeCCCcCccHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 346899999997554445566667778888999998876543
No 384
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=30.22 E-value=1.2e+02 Score=24.00 Aligned_cols=39 Identities=18% Similarity=0.110 Sum_probs=26.5
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|+++.|++.-.--..+.--+-.+.+++|+++.++....+
T Consensus 2 i~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 40 (268)
T cd06298 2 VGVIIPDITNSYFAELARGIDDIATMYKYNIILSNSDND 40 (268)
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 677788876555555665666677778888887765433
No 385
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=30.20 E-value=91 Score=25.76 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=19.9
Q ss_pred CCceEEEE--eCCCCCCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 7 SKLNVAII--HPDLGIGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 7 ~~~kI~~~--hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
++|||+++ ||+.+.--+.+.+.+. ++.+++|++.-
T Consensus 4 ~~~kiLiI~aHP~~~~S~~n~~l~~~----~~~~~~v~~~D 40 (184)
T PRK04930 4 QPPKVLLLYAHPESQDSVANRVLLKP----AQQLEHVTVHD 40 (184)
T ss_pred CCCEEEEEECCCCcccCHHHHHHHHH----HHcCCceEEEE
Confidence 45777766 9986522244444443 34567776543
No 386
>CHL00194 ycf39 Ycf39; Provisional
Probab=30.19 E-value=1e+02 Score=26.31 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=21.5
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||+=.+=-.++.+|.++||+|+.++-.
T Consensus 7 GatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 7 GATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 555567777889999999999988754
No 387
>PRK07206 hypothetical protein; Provisional
Probab=30.17 E-value=89 Score=27.72 Aligned_cols=36 Identities=19% Similarity=0.079 Sum_probs=25.9
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
|++++++-+. ..| ..++.+++++|+++..+++..+.
T Consensus 2 ~k~~liv~~~--~~~-----~~~~~a~~~~G~~~v~v~~~~~~ 37 (416)
T PRK07206 2 MKKVVIVDPF--SSG-----KFLAPAFKKRGIEPIAVTSSCLL 37 (416)
T ss_pred CCeEEEEcCC--chH-----HHHHHHHHHcCCeEEEEEcCCCC
Confidence 3568888774 223 25788889999999999977543
No 388
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=30.11 E-value=91 Score=27.00 Aligned_cols=35 Identities=17% Similarity=-0.003 Sum_probs=28.1
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
++|||++ .||+=.+=..++++|.++|++|+.+...
T Consensus 14 ~~~~vlV------tGatGfiG~~lv~~L~~~g~~V~~~d~~ 48 (348)
T PRK15181 14 APKRWLI------TGVAGFIGSGLLEELLFLNQTVIGLDNF 48 (348)
T ss_pred cCCEEEE------ECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4577665 5777788888999999999999888643
No 389
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=29.91 E-value=1.2e+02 Score=25.67 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=26.8
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+.++-.. |+-|---+..++|..++++|+.|.++...
T Consensus 2 ~~~~~gk-gG~GKtt~a~~la~~~a~~g~~vLlvd~D 37 (254)
T cd00550 2 YIFFGGK-GGVGKTTISAATAVRLAEQGKKVLLVSTD 37 (254)
T ss_pred EEEEECC-CCchHHHHHHHHHHHHHHCCCCceEEeCC
Confidence 4444432 45566678889999999999999999754
No 390
>PRK07814 short chain dehydrogenase; Provisional
Probab=29.70 E-value=1.1e+02 Score=24.91 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=20.8
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||+--+-..+|+.|.++|++|.++...
T Consensus 17 GasggIG~~~a~~l~~~G~~Vi~~~r~ 43 (263)
T PRK07814 17 GAGRGLGAAIALAFAEAGADVLIAART 43 (263)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 445557778899999999999877643
No 391
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=29.64 E-value=2.4e+02 Score=21.01 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=29.6
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
+||+++..+ |=.+--+......|...|++|.+++.+..
T Consensus 2 ~~v~ill~~---g~~~~e~~~~~~~~~~a~~~v~vvs~~~~ 39 (142)
T cd03132 2 RKVGILVAD---GVDAAELSALKAALKAAGANVKVVAPTLG 39 (142)
T ss_pred CEEEEEEcC---CcCHHHHHHHHHHHHHCCCEEEEEecCcC
Confidence 579988876 44445677888899999999999987643
No 392
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=29.59 E-value=52 Score=28.13 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=31.5
Q ss_pred eEEEEeCCC--CCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCc
Q 046633 10 NVAIIHPDL--GIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRR 52 (176)
Q Consensus 10 kI~~~hpdL--giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~h 52 (176)
||.=+||+| -.+|.--.--.+..+.+..|..|+++|..-|.+.
T Consensus 103 rIlNIHPSLLP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~Gp 147 (200)
T COG0299 103 RILNIHPSLLPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGP 147 (200)
T ss_pred ceEecCcccccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCC
Confidence 799999999 5588544444455566678999999997766653
No 393
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=29.51 E-value=83 Score=29.01 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=22.5
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
+|||++ +|.||.|..+ +.+|++.|++|..+-
T Consensus 2 ~~kVLv----lG~G~re~al---~~~l~~~g~~v~~~~ 32 (435)
T PRK06395 2 TMKVML----VGSGGREDAI---ARAIKRSGAILFSVI 32 (435)
T ss_pred ceEEEE----ECCcHHHHHH---HHHHHhCCCeEEEEE
Confidence 478988 8999999866 455566787666553
No 394
>PLN02487 zeta-carotene desaturase
Probab=29.50 E-value=1.1e+02 Score=29.40 Aligned_cols=39 Identities=38% Similarity=0.564 Sum_probs=27.7
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCc
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRR 52 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~h 52 (176)
+++||+++ |.| -= =..+|..|+++||+|+++-.....+.
T Consensus 74 ~~~~v~ii----G~G-~~--Gl~~a~~L~~~g~~v~i~E~~~~~gG 112 (569)
T PLN02487 74 PKLKVAII----GAG-LA--GMSTAVELLDQGHEVDIYESRPFIGG 112 (569)
T ss_pred CCCeEEEE----CCC-HH--HHHHHHHHHhCCCeeEEEecCCCCCC
Confidence 45688887 222 11 35678899999999999988765543
No 395
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=29.47 E-value=1.4e+02 Score=28.05 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=30.8
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
++.+ +++.|-.+.|=. -=++++|+.|+.+|..|+++|+.+.
T Consensus 8 ~~~H-Vvl~PfpaqGHi-~P~l~LAk~La~~G~~VTfv~T~~n 48 (477)
T PLN02863 8 AGTH-VLVFPFPAQGHM-IPLLDLTHRLALRGLTITVLVTPKN 48 (477)
T ss_pred CCCE-EEEecCcccchH-HHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 3445 566688776643 2356999999999999999998764
No 396
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=29.39 E-value=2e+02 Score=23.86 Aligned_cols=35 Identities=3% Similarity=0.022 Sum_probs=21.7
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCC--CeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHG--HNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~G--h~V~l~T~~ 47 (176)
||||+++-..-| ...-.+..++++.+ ++|.++-+.
T Consensus 1 m~ki~vl~sg~g-----s~~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 1 MKRIVVLASGNG-----SNLQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred CceEEEEEcCCC-----hhHHHHHHHHHcCCCCcEEEEEEec
Confidence 589999976532 23346666777764 667665444
No 397
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=29.38 E-value=72 Score=31.95 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=35.3
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCC
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKR 51 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~ 51 (176)
|+|+++.-+.+-.=.++-+-.++.+|.++|++|...++..|..
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 43 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLL 43 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHH
Confidence 6789999998555566678899999999999999999885543
No 398
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=29.23 E-value=71 Score=26.56 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=26.8
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
++|++. +=|+=|---+++++|.+|+++| .|-++=.
T Consensus 3 ~~iav~--~KGGvGKTT~a~nLA~~La~~G-rVLliD~ 37 (264)
T PRK13231 3 KKIAIY--GKGGIGKSTTVSNMAAAYSNDH-RVLVIGC 37 (264)
T ss_pred eEEEEE--CCCCCcHHHHHHHHhcccCCCC-EEEEEeE
Confidence 356677 4455577788999999999999 9887743
No 399
>PLN00198 anthocyanidin reductase; Provisional
Probab=29.17 E-value=1.2e+02 Score=25.86 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=21.6
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
.||+=.+=-.++.+|.++||+|.++..
T Consensus 15 tG~~GfIG~~l~~~L~~~g~~V~~~~r 41 (338)
T PLN00198 15 IGGTGFLASLLIKLLLQKGYAVNTTVR 41 (338)
T ss_pred ECCchHHHHHHHHHHHHCCCEEEEEEC
Confidence 466667788899999999999976653
No 400
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=28.98 E-value=1.7e+02 Score=25.00 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=24.3
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHC--CCeEEEEEee
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSH--GHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~--Gh~V~l~T~~ 47 (176)
||+++.++ .=|==-+..-+..++++. +.+|++++..
T Consensus 1 rILii~~~--~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~ 38 (334)
T TIGR02195 1 KILVIGPS--WVGDMVMAQSLYRLLKKRYPQAVIDVLAPA 38 (334)
T ss_pred CEEEEccc--hhHHHHHHHHHHHHHHHHCCCCEEEEEech
Confidence 57888887 333334445566777775 8899999964
No 401
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=28.98 E-value=1.1e+02 Score=24.52 Aligned_cols=38 Identities=16% Similarity=0.024 Sum_probs=29.0
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||+++.|++..-.-..++--+..+..+.|+++.+....
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 38 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAP 38 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccC
Confidence 68888898766566666667778888899999887544
No 402
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=28.97 E-value=1.3e+02 Score=22.09 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=22.9
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.|-.+-++++++..+++|..|..+|..
T Consensus 53 SG~t~e~i~~~~~a~~~g~~iI~IT~~ 79 (119)
T cd05017 53 SGNTEETLSAVEQAKERGAKIVAITSG 79 (119)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 466677779999999999999999964
No 403
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=28.97 E-value=1.2e+02 Score=26.93 Aligned_cols=34 Identities=35% Similarity=0.504 Sum_probs=25.3
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
.++|+++ | ||. .-+++|..|++.|.+|++++...
T Consensus 137 ~~~vvVi----G-gG~--~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 137 VENVVII----G-GGY--IGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred CCeEEEE----C-CCH--HHHHHHHHHHhCCCcEEEEECCc
Confidence 4578776 2 343 45689999999999999998653
No 404
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=28.89 E-value=1.4e+02 Score=23.48 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=28.6
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|+++-|++....-..+.-.+..+.++.|++|.+.....|
T Consensus 2 igvv~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~ 40 (266)
T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARAAGYSLLLATTDYD 40 (266)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHHHCCCEEEEeeCCCC
Confidence 678888876656666776777778888999888765444
No 405
>PRK01355 azoreductase; Reviewed
Probab=28.86 E-value=1.6e+02 Score=23.80 Aligned_cols=40 Identities=10% Similarity=0.065 Sum_probs=28.7
Q ss_pred CceEEEEeCCCC--CCc-hHHHHHHHHHHHHHC--CCeEEEEEee
Q 046633 8 KLNVAIIHPDLG--IGG-AERLIVDAAVELVSH--GHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLg--iGG-AERlvvdlA~~l~~~--Gh~V~l~T~~ 47 (176)
||||+++.-+.- -+| .++++-..+.++.+. |++|.++-..
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~ 45 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLN 45 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 478888877664 344 566777777788874 6999888765
No 406
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=28.85 E-value=1.6e+02 Score=24.53 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=30.0
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
+...|+++.|++..-=-..++-.+..+++++|+++.+.....+
T Consensus 58 ~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~~~i~~~~~~ 100 (329)
T TIGR01481 58 RTTTVGVIIPDISNIYYAELARGIEDIATMYKYNIILSNSDED 100 (329)
T ss_pred CCCEEEEEeCCCCchhHHHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence 3457999999975433444555666777889999988765533
No 407
>PRK06523 short chain dehydrogenase; Provisional
Probab=28.74 E-value=1.1e+02 Score=24.60 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=19.9
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
||+--+=..+|.+|+++|++|.++..
T Consensus 16 Gas~gIG~~ia~~l~~~G~~v~~~~r 41 (260)
T PRK06523 16 GGTKGIGAATVARLLEAGARVVTTAR 41 (260)
T ss_pred CCCCchhHHHHHHHHHCCCEEEEEeC
Confidence 44445667889999999999987764
No 408
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=28.72 E-value=1.7e+02 Score=23.72 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=30.8
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.++|...... .|-.+.++=.+++++.+.|.||.++...
T Consensus 3 i~~I~gs~r~--~G~t~~l~~~~~~g~~~~G~E~~~i~v~ 40 (207)
T COG0655 3 ILGINGSPRS--NGNTAKLAEAVLEGAEEAGAEVEIIRLP 40 (207)
T ss_pred eeEEEecCCC--CCcHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 4445555444 8999999999999999999999999887
No 409
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=28.70 E-value=1.3e+02 Score=26.71 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHCCCeEEEEEeec
Q 046633 25 RLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 25 RlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
++...++.+.+++|++|.++....
T Consensus 12 ql~~ml~~aa~~lG~~v~~~d~~~ 35 (372)
T PRK06019 12 QLGRMLALAAAPLGYKVIVLDPDP 35 (372)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCC
Confidence 677788999999999999997653
No 410
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=28.69 E-value=62 Score=28.08 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=22.9
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.|||+++ |.|+-= --+|-.|++.|++|++++-.
T Consensus 2 ~m~I~Ii----GaGaiG---~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHIL----GAGSLG---SLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEE----CCCHHH---HHHHHHHHhCCCCeEEEEec
Confidence 4788876 333321 24677888999999999864
No 411
>PRK10867 signal recognition particle protein; Provisional
Probab=28.68 E-value=3.4e+02 Score=25.48 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=27.3
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHC-CCeEEEEEee
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSH-GHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~-Gh~V~l~T~~ 47 (176)
+|.++. ++.+-|==-.+..+|..++++ |..|.+++..
T Consensus 101 ~vI~~v-G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 101 TVIMMV-GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred EEEEEE-CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 343333 555556667788999999999 9999999764
No 412
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=28.62 E-value=80 Score=27.26 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=25.8
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCC
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKR 51 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~ 51 (176)
|||+++=-+ | ++=..+++...+|||+|+-++-+..+-
T Consensus 1 mKIaiIgAs---G---~~Gs~i~~EA~~RGHeVTAivRn~~K~ 37 (211)
T COG2910 1 MKIAIIGAS---G---KAGSRILKEALKRGHEVTAIVRNASKL 37 (211)
T ss_pred CeEEEEecC---c---hhHHHHHHHHHhCCCeeEEEEeChHhc
Confidence 688886444 2 333456778888999999988765443
No 413
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=28.46 E-value=1.1e+02 Score=26.35 Aligned_cols=57 Identities=26% Similarity=0.155 Sum_probs=32.4
Q ss_pred HHHHHHHCCCeEEEEEeecCCCc-ccccccCC-ceeEEEeCCcccchhhhhHHHHHHHHHHHH
Q 046633 30 AAVELVSHGHNVHVFTAHHDKRR-CFEETVNG-TFPVTVYGDFLPRHFFYRLHALCAYLRCLF 90 (176)
Q Consensus 30 lA~~l~~~Gh~V~l~T~~~d~~h-cF~Et~~G-~l~V~v~Gd~lPr~i~gr~~alcA~lR~l~ 90 (176)
+|..|+++|++|+++-.+...+- +.....+| ...+..-+++++ +.-..+...++.+-
T Consensus 2 AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~----~~~~~~~~l~~~lg 60 (419)
T TIGR03467 2 AAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLL----GAYTNLLALLRRIG 60 (419)
T ss_pred hHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEE----cccHHHHHHHHHhC
Confidence 68899999999999988765433 33333343 112333333443 22334555666543
No 414
>PRK06953 short chain dehydrogenase; Provisional
Probab=28.43 E-value=85 Score=24.86 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=20.8
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||.--+-..+|.+|.++|++|.++...
T Consensus 8 G~sg~iG~~la~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 8 GASRGIGREFVRQYRADGWRVIATARD 34 (222)
T ss_pred cCCCchhHHHHHHHHhCCCEEEEEECC
Confidence 555566678899999999999887543
No 415
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=28.25 E-value=76 Score=25.60 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=22.7
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.||+..+=..+|..|.++|++|.+++..
T Consensus 6 tGasg~iG~~la~~l~~~G~~V~~~~r~ 33 (248)
T PRK10538 6 TGATAGFGECITRRFIQQGHKVIATGRR 33 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 4666677788999999999999887654
No 416
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=28.15 E-value=1.4e+02 Score=26.17 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=28.4
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCc
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRR 52 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~h 52 (176)
++|||++-=-| |+- | .=+-.|+++|++.| +|+++....+.+-
T Consensus 4 ~~M~ILltNDD-Gi~-a-~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 45 (257)
T PRK13932 4 KKPHILVCNDD-GIE-G-EGIHVLAASMKKIG-RVTVVAPAEPHSG 45 (257)
T ss_pred CCCEEEEECCC-CCC-C-HHHHHHHHHHHhCC-CEEEEcCCCCCCC
Confidence 45788755444 553 2 23557888888888 8999988776544
No 417
>PRK07233 hypothetical protein; Provisional
Probab=28.05 E-value=90 Score=27.15 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=20.4
Q ss_pred HHHHHHHHHCCCeEEEEEeecCCCc
Q 046633 28 VDAAVELVSHGHNVHVFTAHHDKRR 52 (176)
Q Consensus 28 vdlA~~l~~~Gh~V~l~T~~~d~~h 52 (176)
..+|..|+++|++|+++-.+...+.
T Consensus 12 L~aA~~L~~~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 12 LAAAYRLAKRGHEVTVFEADDQLGG 36 (434)
T ss_pred HHHHHHHHHCCCcEEEEEeCCCCCC
Confidence 3588899999999999988865544
No 418
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.01 E-value=70 Score=25.36 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=21.8
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
||.-.+-..+|++|.++|++|.++....
T Consensus 12 Gasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 12 GASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5555677789999999999988776553
No 419
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=27.94 E-value=1.2e+02 Score=27.15 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=0.0
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
|||+++ |.| ++-..+|..|.++|++|+++.
T Consensus 1 m~viIi----G~G---~ig~~~a~~L~~~g~~v~vid 30 (453)
T PRK09496 1 MKIIIV----GAG---QVGYTLAENLSGENNDVTVID 30 (453)
T ss_pred CEEEEE----CCC---HHHHHHHHHHHhCCCcEEEEE
No 420
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=27.92 E-value=1.3e+02 Score=23.29 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=25.1
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
|.+|.|.|-. --..|+.+..++....++|+.|.|.+..
T Consensus 1 Mt~v~Fy~l~--~~~~~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 1 MTRVDFYHLS--SDDLERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp -EEEEEEE-S------HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred CCeEEEEEcC--CCcHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 3478887765 2233999999999999999999999865
No 421
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=27.92 E-value=1.2e+02 Score=28.05 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=29.5
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.++++| +|.+|.-|..+..++.+++++|++|+++-.+
T Consensus 77 ~vVl~H-GL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~R 113 (345)
T COG0429 77 LVVLFH-GLEGSSNSPYARGLMRALSRRGWLVVVFHFR 113 (345)
T ss_pred eEEEEe-ccCCCCcCHHHHHHHHHHHhcCCeEEEEecc
Confidence 455555 6767777779999999999999999987544
No 422
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=27.73 E-value=1.3e+02 Score=27.57 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=24.4
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+.+|+++ .|| -.-+++|..|++.|.+|++++...
T Consensus 183 ~~~vvVv-----GgG--~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 183 PKKLAVI-----GAG--VIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred CCeEEEE-----CCC--HHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3567766 222 346678999999999999998653
No 423
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=27.65 E-value=1.7e+02 Score=24.53 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=26.0
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCccccc
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEE 56 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~E 56 (176)
=||.++-|. .+.. =++.+|.+|.++|.++..++...+...-+.+
T Consensus 83 DRVllfs~~--~~~~--e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~ 126 (172)
T PF10740_consen 83 DRVLLFSPF--STDE--EAVALAKQLIEQGIPFVGVSPNKPDEEDLED 126 (172)
T ss_dssp -EEEEEES---S--H--HHHHHHHHHHHHT--EEEEE-SS---TTGGG
T ss_pred ceEEEEeCC--CCCH--HHHHHHHHHHHCCCCEEEEEecCCCCCchhh
Confidence 378899888 3333 3568899999999999999943344444554
No 424
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=27.57 E-value=1.3e+02 Score=24.69 Aligned_cols=38 Identities=8% Similarity=-0.073 Sum_probs=30.5
Q ss_pred eEEEEeCC---CCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 10 NVAIIHPD---LGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpd---LgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||+++.|+ +...--..++--+..+++++|+++.+..+.
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy~~~i~~~~ 41 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKELGIEYKYVESK 41 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 68889997 666667777778888888999999998654
No 425
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=27.56 E-value=1.6e+02 Score=23.44 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=30.0
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
|+++-|++...--..+.-.+.+++++.|++|.+.+...++
T Consensus 2 igvi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 41 (264)
T cd06274 2 IGLIIPDLENRSFARIAKRLEALARERGYQLLIACSDDDP 41 (264)
T ss_pred EEEEeccccCchHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 6788888776666777777777788899998887665444
No 426
>PRK08643 acetoin reductase; Validated
Probab=27.50 E-value=1.1e+02 Score=24.50 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=19.9
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
||+-.+=..+|.+|+++|++|.++..
T Consensus 9 Gas~giG~~la~~l~~~G~~v~~~~r 34 (256)
T PRK08643 9 GAGQGIGFAIAKRLVEDGFKVAIVDY 34 (256)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 55555667889999999999877653
No 427
>PRK12937 short chain dehydrogenase; Provisional
Probab=27.43 E-value=74 Score=25.19 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.1
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
.||+.-+-..+|..|.++|++|.++..
T Consensus 11 tG~~~~iG~~la~~l~~~g~~v~~~~~ 37 (245)
T PRK12937 11 TGASRGIGAAIARRLAADGFAVAVNYA 37 (245)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 578888999999999999999977643
No 428
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=27.42 E-value=1.1e+02 Score=25.49 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=32.4
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEE-EeecC
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVF-TAHHD 49 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~-T~~~d 49 (176)
+|+++.|+........++--+-.+.++.|++|.++ ....|
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~g~~v~~~~~~~~d 41 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKELGVDAIYVGPTTAD 41 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHhCCeEEEECCCCCC
Confidence 58889999888888888888888899999999876 34334
No 429
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=27.37 E-value=2.9e+02 Score=26.34 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=28.4
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+.+|+++=|. +=|=--.+..+|..+.++|..|-+++..
T Consensus 241 ~~vI~LVGpt--GvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 241 VQTIALIGPT--GVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred CcEEEEECCC--CCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 3467776662 4456667778889999999999998864
No 430
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional
Probab=27.32 E-value=88 Score=27.91 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=37.3
Q ss_pred CceEEEEeCCCCCCchHHHHHHHH-HHHHHCCCeE-EEEEeecCCCcccccccCCceeEEEeCCcccc
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAA-VELVSHGHNV-HVFTAHHDKRRCFEETVNGTFPVTVYGDFLPR 73 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA-~~l~~~Gh~V-~l~T~~~d~~hcF~Et~~G~l~V~v~Gd~lPr 73 (176)
.+.|.|-+++.- ++ .+...++ .-|.++||+| .+... +....|....+|.+++.. ..|+|.
T Consensus 28 ~~~V~~~~~~W~--~~-~~~t~v~~~iLe~~GY~V~e~~~~--~~~~~~~ala~GdiDv~~-~~W~P~ 89 (331)
T PRK11119 28 GITVQPAQSTIA--EE-TFQTLLVSRALEKLGYDVNKPKEV--DYNVFYTSIANGDATFTA-VNWFPL 89 (331)
T ss_pred CeEEEEeecCcc--HH-HHHHHHHHHHHHHcCCceeeeccc--CcHHHHHHHHcCCCeEeh-hhcccc
Confidence 346777777732 22 2333444 4455689999 66655 334557778888888864 458885
No 431
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=27.26 E-value=1.6e+02 Score=21.47 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=25.4
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
-|.+|+++-.++.++.+.|++|.++...
T Consensus 9 tGnT~~~A~~i~~~~~~~g~~v~~~~~~ 36 (140)
T TIGR01753 9 TGNTEEMANIIAEGLKEAGAEVDLLEVA 36 (140)
T ss_pred CcHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 8999999999999999999999887654
No 432
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=27.13 E-value=4e+02 Score=22.73 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=25.0
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHC--CCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSH--GHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~--Gh~V~l~T~~ 47 (176)
|||+++.++ ++|=+ -+..=+..+++++ +.+++++|..
T Consensus 1 m~ILii~~~-~iGD~-v~~~p~~~~lk~~~P~a~I~~l~~~ 39 (322)
T PRK10964 1 MRVLIVKTS-SMGDV-LHTLPALTDAQQAIPGIQFDWVVEE 39 (322)
T ss_pred CeEEEEecc-chHHH-HhHHHHHHHHHHhCCCCEEEEEECH
Confidence 689999999 44422 2233445566664 8899999864
No 433
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=26.94 E-value=80 Score=31.64 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=34.4
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
|+|.++.++.+-.=+++-+-.++.+|.++|++|...++..|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~ 42 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDL 42 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHH
Confidence 689999999754555667889999999999999999987554
No 434
>PLN02670 transferase, transferring glycosyl groups
Probab=26.91 E-value=65 Score=30.30 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=28.0
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 12 AIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 12 ~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+++.|-.+.|=. -=++++|+.|+.+|..|+++|+.+
T Consensus 9 Vvl~P~paqGHi-~P~l~LAk~La~~G~~vT~v~t~~ 44 (472)
T PLN02670 9 VAMFPWLAMGHL-IPFLRLSKLLAQKGHKISFISTPR 44 (472)
T ss_pred EEEeCChhhhHH-HHHHHHHHHHHhCCCEEEEEeCCc
Confidence 456687777532 335699999999999999999875
No 435
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=26.89 E-value=1.2e+02 Score=26.63 Aligned_cols=35 Identities=20% Similarity=0.458 Sum_probs=26.5
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCC
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDK 50 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~ 50 (176)
|||+|+ |.-...+...++|.+.||++..+.++.|+
T Consensus 1 mkIvf~-------G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~ 35 (309)
T PRK00005 1 MRIVFM-------GTPEFAVPSLKALLESGHEVVAVVTQPDR 35 (309)
T ss_pred CEEEEE-------CCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 688887 44457788899998889999876666553
No 436
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=26.77 E-value=1.4e+02 Score=30.39 Aligned_cols=55 Identities=24% Similarity=0.293 Sum_probs=41.9
Q ss_pred CCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccc-cccCCceeEEEeCCccc
Q 046633 16 PDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFE-ETVNGTFPVTVYGDFLP 72 (176)
Q Consensus 16 pdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~-Et~~G~l~V~v~Gd~lP 72 (176)
|.||.||-=|++.+...+++..|.-.+=+.....-+- |+ +..|| -.+....+|++
T Consensus 108 a~LGnGGLGrLAacfldS~AtL~lP~~GyGirY~yG~-F~Q~I~dG-~Q~E~pd~Wl~ 163 (798)
T PRK14985 108 PALGNGGLGRLAACFLDSMATVGQPATGYGLNYQYGL-FRQSFVDG-KQVEAPDDWHR 163 (798)
T ss_pred CCCCCcchHHHHHHHHHHHHhCCCCeEEEEeccCCCC-eEEEEECC-eEEECCCCccc
Confidence 7899999999999999999999999888888765544 54 33444 55565656654
No 437
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=26.75 E-value=1.6e+02 Score=23.38 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.4
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
||.-.+-..+|.+|.++|++|.++..
T Consensus 15 Gas~~iG~~la~~l~~~G~~v~~~~~ 40 (252)
T PRK08220 15 GAAQGIGYAVALAFVEAGAKVIGFDQ 40 (252)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEec
Confidence 55567788899999999999988754
No 438
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=26.74 E-value=1.4e+02 Score=27.07 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=25.3
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+.+++++ | || -.-+++|..|+++|.+|++++..
T Consensus 166 ~~~vvII----G-gG--~~g~E~A~~l~~~g~~Vtli~~~ 198 (463)
T TIGR02053 166 PESLAVI----G-GG--AIGVELAQAFARLGSEVTILQRS 198 (463)
T ss_pred CCeEEEE----C-CC--HHHHHHHHHHHHcCCcEEEEEcC
Confidence 4577776 2 23 45778999999999999999865
No 439
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=26.72 E-value=2.7e+02 Score=21.61 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=47.0
Q ss_pred CCCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccccccCC------------ceeEEEeCC
Q 046633 6 SSKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFEETVNG------------TFPVTVYGD 69 (176)
Q Consensus 6 ~~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~Et~~G------------~l~V~v~Gd 69 (176)
..+.+|+.+.++=..=..|+-+.|+.-..-++|.+..++-... -..-|.+.+.| .+++.+.||
T Consensus 3 ~~~~~v~~~~s~~~~i~~~qdalDLi~~~~~~~~~~i~l~~~~-l~~dFF~L~TglAGeiLQKf~NY~iklAivGD 77 (113)
T PF13788_consen 3 KNGIRVAEVSSDEPLISDEQDALDLIGTAYEHGADRIILPKEA-LSEDFFDLRTGLAGEILQKFVNYRIKLAIVGD 77 (113)
T ss_pred CCCeEEEEEeCCCCeecchhHHHHHHHHHHHcCCCEEEEEhHH-CCHHHHHhhcchHHHHHHHHHhhceeEEEEEc
Confidence 3567899999986666788888898888888888888776653 33347777766 466777787
No 440
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=26.70 E-value=1e+02 Score=26.83 Aligned_cols=36 Identities=33% Similarity=0.386 Sum_probs=25.3
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
.+++|+++=-+ ..| ..+|..++++|++|+++.....
T Consensus 17 ~~~~VvIIG~G--~aG-----l~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 17 TGKKVAIIGAG--PAG-----LAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCCEEEEECcC--HHH-----HHHHHHHHHCCCcEEEEeCCCC
Confidence 45688876332 333 5588889999999999976533
No 441
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=26.69 E-value=87 Score=24.54 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=21.8
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||+-.+-..+|..|.++|++|.++...
T Consensus 5 G~~g~iG~~la~~l~~~G~~v~~~~r~ 31 (239)
T TIGR01830 5 GASRGIGRAIALKLAKEGAKVIITYRS 31 (239)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 555578889999999999999777543
No 442
>PRK07041 short chain dehydrogenase; Provisional
Probab=26.66 E-value=84 Score=24.75 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=22.4
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
.||+..+-..+|..|.++|++|.++..
T Consensus 3 tGas~~iG~~~a~~l~~~G~~v~~~~r 29 (230)
T PRK07041 3 VGGSSGIGLALARAFAAEGARVTIASR 29 (230)
T ss_pred ecCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 367778888899999999999977754
No 443
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=26.63 E-value=1.2e+02 Score=22.89 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=23.1
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHC-CCeEEE
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSH-GHNVHV 43 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~-Gh~V~l 43 (176)
||.+.+.. -.---++.|.++|..|.+. |.+|.+
T Consensus 2 kVfI~Ys~-d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 2 KVFISYSH-DSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred eEEEEeCC-CCHHHHHHHHHHHHHHHhccCCceee
Confidence 55555555 2223346788999999999 999874
No 444
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=26.62 E-value=1.4e+02 Score=24.25 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=29.1
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||+++.|++..---+.++--+..++.+.|+++.+....
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~ 38 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRLGVSLKLLEAG 38 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 58888898766666777777777888899998887543
No 445
>PRK09526 lacI lac repressor; Reviewed
Probab=26.55 E-value=2.3e+02 Score=23.76 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=29.4
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
...|+++.|++..---.+++-.+..++.++|+++.+.+..
T Consensus 63 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~~~~ 102 (342)
T PRK09526 63 SLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVISMVE 102 (342)
T ss_pred CceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3569999999754444556666667788899999987654
No 446
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=26.52 E-value=1.3e+02 Score=25.96 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=33.1
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
++.+|+++.|+++.----.++-.+-.++.++|+++.+..+..+
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~ 66 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGN 66 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCC
Confidence 4578999999987766666666666777789999999876533
No 447
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=26.49 E-value=1.2e+02 Score=24.72 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=23.7
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
++|||+++ |+.=.+=-.++.+|.++||+|+.++-.
T Consensus 16 ~~~~ilIt------GasG~iG~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 16 KTKTVFVA------GATGRTGKRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred cCCeEEEE------CCCcHHHHHHHHHHHhCCCEEEEEecC
Confidence 45677663 333355567788888899999877643
No 448
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=26.43 E-value=47 Score=31.28 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=23.7
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCC--CeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHG--HNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~G--h~V~l~T~~ 47 (176)
+|||+++ ++|..| .-+|..|+++| |+|+.+-..
T Consensus 1 ~m~I~Vi--G~GyvG-----l~~A~~lA~~g~g~~V~gvD~~ 35 (473)
T PLN02353 1 MVKICCI--GAGYVG-----GPTMAVIALKCPDIEVVVVDIS 35 (473)
T ss_pred CCEEEEE--CCCHHH-----HHHHHHHHhcCCCCeEEEEECC
Confidence 4789888 555545 47888899885 678777643
No 449
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=26.26 E-value=1.5e+02 Score=25.34 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=20.3
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
.+|+.+..-.+...|.++|.++.++++.
T Consensus 9 ~~~~~~~~~~~~~~l~~~g~~~~v~~t~ 36 (293)
T TIGR03702 9 KQADNEDVREAVGDLRDEGIQLHVRVTW 36 (293)
T ss_pred CccchhHHHHHHHHHHHCCCeEEEEEec
Confidence 3445455657777899999998887665
No 450
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=26.25 E-value=2e+02 Score=24.18 Aligned_cols=43 Identities=7% Similarity=0.077 Sum_probs=30.1
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
+...|+++.|++...=-..+.--+..+.++.|+++.++.+..|
T Consensus 58 ~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~ 100 (341)
T PRK10703 58 HTKSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLILCNAWNN 100 (341)
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3457999999975544445555666677789999988765533
No 451
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.19 E-value=1.9e+02 Score=21.30 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=23.3
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
|+.+..+.+++..++++|..|..+|...
T Consensus 72 g~t~~~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 72 DRLEEKLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred ChhHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 4555668899999999999999999774
No 452
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=26.13 E-value=1.1e+02 Score=24.75 Aligned_cols=38 Identities=11% Similarity=-0.088 Sum_probs=22.9
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||+++-|++...--..++-.+-.++++.|+++.++.+.
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 38 (289)
T cd01540 1 KIGFIVKQPEEPWFQTEWKFAKKAAKEKGFTVVKIDVP 38 (289)
T ss_pred CeeeecCCCCCcHHHHHHHHHHHHHHHcCCEEEEccCC
Confidence 46666676654445555555556666677777666544
No 453
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=26.02 E-value=1.7e+02 Score=27.26 Aligned_cols=38 Identities=39% Similarity=0.445 Sum_probs=27.3
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCC
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKR 51 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~ 51 (176)
++++|++| +||+-=+ .+|.++.++|++|+++-...+.+
T Consensus 9 ~~~~VaII-----GAG~aGL--~aA~~l~~~G~~v~vfE~~~~vG 46 (461)
T PLN02172 9 NSQHVAVI-----GAGAAGL--VAARELRREGHTVVVFEREKQVG 46 (461)
T ss_pred CCCCEEEE-----CCcHHHH--HHHHHHHhcCCeEEEEecCCCCc
Confidence 45788887 3444333 47899999999999998765544
No 454
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.98 E-value=1.9e+02 Score=22.97 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=28.9
Q ss_pred EEEEeCCC-CCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 11 VAIIHPDL-GIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 11 I~~~hpdL-giGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|+++.|++ ...-...++-.+..++++.|+++.++....+
T Consensus 2 ig~v~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~ 41 (269)
T cd06288 2 IGLISDEIATTPFAVEIILGAQDAAREHGYLLLVVNTGGD 41 (269)
T ss_pred eEEEeCCCCCCccHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 77888987 5555666666777788889999988776544
No 455
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=25.97 E-value=1.1e+02 Score=22.30 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=25.8
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
..|..+-++++++..+++|..|..+|...+
T Consensus 56 ~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 56 NSGETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 457778888999999999999999998754
No 456
>PLN02735 carbamoyl-phosphate synthase
Probab=25.95 E-value=1.1e+02 Score=31.85 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=30.3
Q ss_pred ccCCCceEEEEeCCC-CCC-chHH--HHHHHHHHHHHCCCeEEEEEeec
Q 046633 4 RRSSKLNVAIIHPDL-GIG-GAER--LIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 4 ~~~~~~kI~~~hpdL-giG-GAER--lvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+++..+||+++=-+- .+| .+|+ --.+++.+|++.|++|.++.+..
T Consensus 19 ~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np 67 (1102)
T PLN02735 19 KRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNP 67 (1102)
T ss_pred cccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCc
Confidence 344567888863332 122 2342 46688999999999999997664
No 457
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=25.92 E-value=1.3e+02 Score=26.03 Aligned_cols=33 Identities=30% Similarity=0.340 Sum_probs=23.7
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+|||+|+= +| ..=..+|..|+++||+|+++...
T Consensus 2 ~~~V~VIG--~G-----~mG~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 2 MGSVAIIG--AG-----LIGRAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred CcEEEEEC--cc-----HHHHHHHHHHHHCCCeeEEEeCC
Confidence 35777762 22 33347889999999999999754
No 458
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=25.88 E-value=1.3e+02 Score=26.47 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=24.0
Q ss_pred ceEEEEeCCCCCCchHHH--HHHHHHHHHHCCCeEEEEEeec
Q 046633 9 LNVAIIHPDLGIGGAERL--IVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERl--vvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
||+.|+- |-||.=+- ...+|.+++++|+.|-+++..+
T Consensus 1 ~r~~~~~---GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dp 39 (305)
T PF02374_consen 1 MRILFFG---GKGGVGKTTVAAALALALARRGKRTLLVSTDP 39 (305)
T ss_dssp -SEEEEE---ESTTSSHHHHHHHHHHHHHHTTS-EEEEESST
T ss_pred CeEEEEe---cCCCCCcHHHHHHHHHHHhhCCCCeeEeecCC
Confidence 5666663 45655554 4457788899999998887643
No 459
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=25.81 E-value=1.5e+02 Score=26.65 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=25.1
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
++||+++ | || -.-+++|..|++.|.+|+++...
T Consensus 157 ~~~vvII----G-gG--~~g~e~A~~l~~~g~~Vtli~~~ 189 (438)
T PRK07251 157 PERLGII----G-GG--NIGLEFAGLYNKLGSKVTVLDAA 189 (438)
T ss_pred CCeEEEE----C-CC--HHHHHHHHHHHHcCCeEEEEecC
Confidence 4577775 2 22 46778999999999999999865
No 460
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.78 E-value=89 Score=24.84 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.1
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
||.-.+-..+|.+|+++|++|.++...
T Consensus 14 G~sg~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 14 GAGRGIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred cCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 566678888999999999999887643
No 461
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=25.72 E-value=1.9e+02 Score=24.27 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=30.5
Q ss_pred CceEEEEeCC------C-CCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 8 KLNVAIIHPD------L-GIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 8 ~~kI~~~hpd------L-giGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
+.++++|+-. + .--||++=+-.++..|++.|++|++...
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~n 53 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNN 53 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCC
Confidence 4567766544 3 3469999999999999999999987653
No 462
>PRK10490 sensor protein KdpD; Provisional
Probab=25.67 E-value=1.8e+02 Score=29.38 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 22 GAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 22 GAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
|--.-+.+.|.+++++|+||.+=-.
T Consensus 36 gkt~~ml~~a~~~~~~g~dvv~g~~ 60 (895)
T PRK10490 36 GKTYAMLQEAQRLRAQGLDVLVGVV 60 (895)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4556677999999999999976443
No 463
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=25.66 E-value=1.3e+02 Score=27.32 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=25.6
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+.+++++ .|| -.-+++|..|++.|.+|+++....
T Consensus 166 ~~~vvII-----GgG--~iG~E~A~~l~~~g~~Vtli~~~~ 199 (450)
T TIGR01421 166 PKRVVIV-----GAG--YIAVELAGVLHGLGSETHLVIRHE 199 (450)
T ss_pred CCeEEEE-----CCC--HHHHHHHHHHHHcCCcEEEEecCC
Confidence 3567666 233 467789999999999999998654
No 464
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=25.57 E-value=89 Score=25.70 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHCCCeEEEEEeec
Q 046633 25 RLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 25 RlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
+.=..+|.++.++|++|++++...
T Consensus 30 ~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 30 KMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHHHHCCCEEEEEecCc
Confidence 455679999999999999999774
No 465
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=25.57 E-value=1.7e+02 Score=23.20 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=26.3
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
|+++.|++..-=-..+.-.+..++++.|+++.+.....
T Consensus 2 i~vv~p~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~ 39 (268)
T cd06273 2 IGAIVPTLDNAIFARVIQAFQETLAAHGYTLLVASSGY 39 (268)
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEecCCC
Confidence 67777876655556666667777888888887765443
No 466
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=25.56 E-value=73 Score=25.24 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=23.0
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
.+||+++ |+-++....|+.|.+.|++|+++.
T Consensus 13 ~~~vlVv-------GGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVII-------GGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEE-------CCCHHHHHHHHHHHhCCCEEEEEc
Confidence 3456654 334566778889999999999995
No 467
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=25.55 E-value=1.7e+02 Score=28.78 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=32.3
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
+.|+..+-...+.-|---+.+++|.++++.|+.|.++-.
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~ 568 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDA 568 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 346766666667778899999999999999999998854
No 468
>PRK08339 short chain dehydrogenase; Provisional
Probab=25.40 E-value=1.5e+02 Score=24.41 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=21.6
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
|++++. ||+--+=..+|.+|+++|++|.+...
T Consensus 9 k~~lIt-----Gas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 9 KLAFTT-----ASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CEEEEe-----CCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 555552 33334455689999999999987653
No 469
>PLN02240 UDP-glucose 4-epimerase
Probab=25.40 E-value=1.5e+02 Score=25.21 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=23.6
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
+||++. ||.-.+=..++..|.++||+|+++.
T Consensus 6 ~~vlIt------GatG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 6 RTILVT------GGAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CEEEEE------CCCChHHHHHHHHHHHCCCEEEEEe
Confidence 466553 5555677788999999999998875
No 470
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.24 E-value=1.3e+02 Score=24.64 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHCCCeEEEEE
Q 046633 26 LIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 26 lvvdlA~~l~~~Gh~V~l~T 45 (176)
+=-.+|.+|+++|++|.+..
T Consensus 21 IG~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 21 IAWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred hHHHHHHHHHHCCCEEEEec
Confidence 44678999999999998763
No 471
>PLN02650 dihydroflavonol-4-reductase
Probab=25.15 E-value=1.5e+02 Score=25.36 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=22.8
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
.||+=.+=..++.+|.++|++|..+..
T Consensus 11 TGatGfIGs~l~~~L~~~G~~V~~~~r 37 (351)
T PLN02650 11 TGASGFIGSWLVMRLLERGYTVRATVR 37 (351)
T ss_pred eCCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 477778888999999999999987654
No 472
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=25.08 E-value=97 Score=31.19 Aligned_cols=55 Identities=24% Similarity=0.330 Sum_probs=41.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecCCCcccc-cccCCceeEEEeCCccc
Q 046633 16 PDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHDKRRCFE-ETVNGTFPVTVYGDFLP 72 (176)
Q Consensus 16 pdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d~~hcF~-Et~~G~l~V~v~Gd~lP 72 (176)
|.||.||-=|++......++..|.-..=+..+..-+- |+ ...|| -.|....+|+.
T Consensus 19 a~LGNGGLGRLAacfldSlAtl~~p~~GygirY~yG~-F~Q~i~dG-~QvE~pd~Wl~ 74 (713)
T PF00343_consen 19 AGLGNGGLGRLAACFLDSLATLGIPAYGYGIRYEYGL-FKQKIVDG-WQVELPDNWLR 74 (713)
T ss_dssp EEESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCES-EEEEEETT-EEEEEEEBTTT
T ss_pred ccccCcccchhHHHHHHHHHhCCCCceEEEeeecCCC-ceeEeecC-CcccCCCCccC
Confidence 6799999999999999999999999999988865544 54 44566 66777777753
No 473
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=25.05 E-value=1.3e+02 Score=24.11 Aligned_cols=38 Identities=8% Similarity=-0.034 Sum_probs=23.1
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHH-CCCeEEEEEee
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVS-HGHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~-~Gh~V~l~T~~ 47 (176)
||+++.|++...=-..+.--+..++++ .|+++.+..+.
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~ 39 (272)
T cd06301 1 KIGVSMANFDDNFLTLLRNAMKEHAKVLGGVELQFEDAK 39 (272)
T ss_pred CeeEeecccCCHHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 577888876543333444445555666 78888776553
No 474
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.05 E-value=1.6e+02 Score=24.65 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=28.4
Q ss_pred EEEEeCCC-CCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 11 VAIIHPDL-GIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 11 I~~~hpdL-giGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
|+++.|++ .-.--.+++-.+..++.+.|+++.+..+.
T Consensus 2 Igvi~~~~~~~~~~~~~~~gi~~~~~~~g~~v~~~~~~ 39 (305)
T cd06324 2 VVFLNPGKSDEPFWNSVARFMQAAADDLGIELEVLYAE 39 (305)
T ss_pred eEEecCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 77888887 66667777777778888889888877654
No 475
>PF05586 Ant_C: Anthrax receptor C-terminus region; InterPro: IPR008399 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively cytoplasmic C terminus of the anthrax receptor.; GO: 0004872 receptor activity, 0016021 integral to membrane
Probab=25.02 E-value=38 Score=25.76 Aligned_cols=17 Identities=41% Similarity=0.348 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHHH
Q 046633 75 FFYRLHALCAYLRCLFV 91 (176)
Q Consensus 75 i~gr~~alcA~lR~l~~ 91 (176)
|.||+-|++|.||+-|-
T Consensus 56 IKGrlDALwaLlRr~YD 72 (95)
T PF05586_consen 56 IKGRLDALWALLRRQYD 72 (95)
T ss_pred ccchHHHHHHHHHhccc
Confidence 78999999999988764
No 476
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=25.01 E-value=1.1e+02 Score=21.83 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=24.4
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
.|...-++++++..+++|..+..+|...+
T Consensus 70 ~g~~~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 70 SGETKETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 46667788999999999999999998744
No 477
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=24.96 E-value=1.6e+02 Score=26.99 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=23.2
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
|||++-. .||-+--| +|.-|+++||+|+=+++..
T Consensus 1 ~kV~vam----SGGVDSsv--aA~LLk~~G~~V~Gv~m~~ 34 (356)
T PF03054_consen 1 KKVLVAM----SGGVDSSV--AAALLKEQGYDVIGVTMRN 34 (356)
T ss_dssp -EEEEE------SSHHHHH--HHHHHHHCT-EEEEEEEE-
T ss_pred CeEEEEc----cCCHHHHH--HHHHHHhhcccceEEEEEE
Confidence 4555543 48888776 6778899999999999874
No 478
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=24.83 E-value=3.1e+02 Score=23.57 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=24.1
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHC--CCeEEEEEee
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSH--GHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~--Gh~V~l~T~~ 47 (176)
||+++.++ ++|= =-+..-+..+|+++ +.+++++|..
T Consensus 1 rILii~~~-~iGD-~vl~tp~l~~Lk~~~P~a~I~~l~~~ 38 (344)
T TIGR02201 1 RILLIKLR-HHGD-MLLTTPVISSLKKNYPDAKIDVLLYQ 38 (344)
T ss_pred CEEEEEec-cccc-eeeHHHHHHHHHHHCCCCEEEEEECc
Confidence 57778776 3443 23444566777774 7889999875
No 479
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=24.79 E-value=2.2e+02 Score=24.12 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=30.3
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
+...|+++.|++...=-..++-.+..+++++|+++.+.....+
T Consensus 58 ~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~ 100 (343)
T PRK10727 58 STETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHN 100 (343)
T ss_pred CCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence 3457999999975544455666667778889999877655433
No 480
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.78 E-value=1.9e+02 Score=23.03 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=28.4
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH 48 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~ 48 (176)
|+++.|++...--..+.-.+..+.++.|+++.+.....
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~ 39 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAAAGYDVVLSESGR 39 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 67888887666666777777777888888888776653
No 481
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=24.74 E-value=2e+02 Score=27.13 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=33.1
Q ss_pred CCceEE-EEeCCCCCCchHHHHHH-HHHHHHHCCCeEEEEEeecCCCcc
Q 046633 7 SKLNVA-IIHPDLGIGGAERLIVD-AAVELVSHGHNVHVFTAHHDKRRC 53 (176)
Q Consensus 7 ~~~kI~-~~hpdLgiGGAERlvvd-lA~~l~~~Gh~V~l~T~~~d~~hc 53 (176)
+++|+. |+.|.-|-|-|++..-+ +...|.+.|.++.++.+.+. +|.
T Consensus 110 ~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~-ghA 157 (481)
T PLN02958 110 RPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQ-LHA 157 (481)
T ss_pred CCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCc-cHH
Confidence 345554 67888788888888765 66689999999988776643 443
No 482
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=24.63 E-value=1.2e+02 Score=26.02 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=23.3
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+||+|+ |.-..=..+|..|.+.||+|+++...
T Consensus 2 ~~Ig~I-------GlG~mG~~mA~~l~~~G~~V~v~d~~ 33 (296)
T PRK15461 2 AAIAFI-------GLGQMGSPMASNLLKQGHQLQVFDVN 33 (296)
T ss_pred CeEEEE-------eeCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 368776 33344557899999999999888544
No 483
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.60 E-value=1.2e+02 Score=25.01 Aligned_cols=40 Identities=20% Similarity=0.088 Sum_probs=30.4
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
.|+++.|++...--+.++-.+..++.+.|+++.++....+
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~ 40 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKELGAEVIVQNANGD 40 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCC
Confidence 3778888877777777777777778888888888776543
No 484
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=24.55 E-value=2.2e+02 Score=25.41 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=23.7
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
||+|.=-+ .=|-.-+..|++.+|+++|+.|..+-
T Consensus 2 ~IAiYGKG--GIGKST~~~Nlsaala~~G~kVl~iG 35 (273)
T PF00142_consen 2 KIAIYGKG--GIGKSTTASNLSAALAEMGKKVLQIG 35 (273)
T ss_dssp EEEEEEST--TSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEcCC--CcccChhhhHHHHHHHhccceeeEec
Confidence 56655332 33567788999999999999998875
No 485
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=24.53 E-value=1.9e+02 Score=22.86 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=18.9
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
|+++.|+..-.--..+.--+.++.++.|+++.++..
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~g~~~~~~~~ 37 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAHGYQVLVCNS 37 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 455555554444444555555555556666555443
No 486
>PLN03015 UDP-glucosyl transferase
Probab=24.52 E-value=5.5e+02 Score=24.30 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=27.4
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHHHC-CCeEEEEEeec
Q 046633 12 AIIHPDLGIGGAERLIVDAAVELVSH-GHNVHVFTAHH 48 (176)
Q Consensus 12 ~~~hpdLgiGGAERlvvdlA~~l~~~-Gh~V~l~T~~~ 48 (176)
+++.|-.+.|=. -=++++|+.|+.+ |..|+++|...
T Consensus 6 vvl~P~p~qGHi-~P~l~LAk~La~~~g~~vT~v~t~~ 42 (470)
T PLN03015 6 ALLVASPGLGHL-IPILELGNRLSSVLNIHVTILAVTS 42 (470)
T ss_pred EEEECCcccccH-HHHHHHHHHHHhCCCCeEEEEECCC
Confidence 566688777544 3456999999987 99999998664
No 487
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=24.42 E-value=1.7e+02 Score=28.57 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=32.2
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+.||..+--.-|.=|.--+.+++|.+|++.|+.|.++-..
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D 584 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDAD 584 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3466666666677789999999999999999999998654
No 488
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=24.42 E-value=1.7e+02 Score=26.37 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=24.5
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
++|++++ .|| -.-+++|..|+++|.+|++++..
T Consensus 172 ~~~vvVv-----GgG--~~g~E~A~~l~~~g~~Vtli~~~ 204 (462)
T PRK06416 172 PKSLVVI-----GGG--YIGVEFASAYASLGAEVTIVEAL 204 (462)
T ss_pred CCeEEEE-----CCC--HHHHHHHHHHHHcCCeEEEEEcC
Confidence 3566665 233 45778899999999999999865
No 489
>PRK13556 azoreductase; Provisional
Probab=24.36 E-value=1.9e+02 Score=23.41 Aligned_cols=40 Identities=8% Similarity=-0.036 Sum_probs=25.8
Q ss_pred CceEEEEeCCCC--CCch-HHHHHHHHHHHHHC--CCeEEEEEee
Q 046633 8 KLNVAIIHPDLG--IGGA-ERLIVDAAVELVSH--GHNVHVFTAH 47 (176)
Q Consensus 8 ~~kI~~~hpdLg--iGGA-ERlvvdlA~~l~~~--Gh~V~l~T~~ 47 (176)
||||+++.-+.- -++. .++.-..++.+++. ||+|+++-.+
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~ 45 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLY 45 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 467877765553 2554 44555566677764 8999988765
No 490
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.33 E-value=1.4e+02 Score=23.88 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=24.2
Q ss_pred eEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEee
Q 046633 10 NVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAH 47 (176)
Q Consensus 10 kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~ 47 (176)
+|+++.|++...=-..+.-.+..+..+.|+++.++...
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 38 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKALGYDAVELSAE 38 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHhcCCeEEEecCC
Confidence 46777777655545555555556666777777776554
No 491
>PLN02342 ornithine carbamoyltransferase
Probab=24.24 E-value=2.5e+02 Score=25.56 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=55.6
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeec-CCCc------------ccc------cccCCceeEEEe
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHH-DKRR------------CFE------ETVNGTFPVTVY 67 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~-d~~h------------cF~------Et~~G~l~V~v~ 67 (176)
+.+||+++ .| + -+++-.++.+++..|.+|++++... .+.. -++ |..+| .+|...
T Consensus 193 ~glkva~v-GD---~--~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~-aDVvy~ 265 (348)
T PLN02342 193 EGTKVVYV-GD---G--NNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKG-ADVVYT 265 (348)
T ss_pred CCCEEEEE-CC---C--chhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCC-CCEEEE
Confidence 45789986 33 2 3799999999999999999998753 1110 122 22222 456666
Q ss_pred CCcccchhhhhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEcCCCccchhee
Q 046633 68 GDFLPRHFFYRLHALCAYLRCLFVALCVLLRSSSYDVIIADQVSVVIPVLK 118 (176)
Q Consensus 68 Gd~lPr~i~gr~~alcA~lR~l~~~~~~~~~~~~~DVvi~Dqvs~~iP~l~ 118 (176)
..|.++.-..+....-.+.+..-.. .-.+...++|++| -+|.|..+
T Consensus 266 ~~W~s~~~~e~~~~~~~~~~~y~vt-~ell~~ak~~aiv----MHpLP~~r 311 (348)
T PLN02342 266 DVWASMGQKEEAEKRKKAFQGFQVN-EALMKLAGPQAYF----MHCLPAER 311 (348)
T ss_pred CCccccccchhhHHHHHhccCCccC-HHHHhccCCCcEE----eCCCCcCC
Confidence 6677653333322111111111111 1112345788877 58899876
No 492
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=24.24 E-value=2.1e+02 Score=22.86 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=27.0
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC
Q 046633 11 VAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD 49 (176)
Q Consensus 11 I~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d 49 (176)
|+++.|++...=-..++--+..+..+.|+++.++....|
T Consensus 2 igvi~p~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~ 40 (268)
T cd06270 2 IGLVVSDLDGPFFGPLLSGVESVARKAGKHLIITAGHHS 40 (268)
T ss_pred EEEEEccccCcchHHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 677778876555555666666777778888887765544
No 493
>PRK07208 hypothetical protein; Provisional
Probab=24.22 E-value=3e+02 Score=24.78 Aligned_cols=71 Identities=25% Similarity=0.226 Sum_probs=40.9
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEeecC-CCcccccccCCceeEEEeCCcccchhhhhHHHHHHH
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTAHHD-KRRCFEETVNGTFPVTVYGDFLPRHFFYRLHALCAY 85 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~~~d-~~hcF~Et~~G~l~V~v~Gd~lPr~i~gr~~alcA~ 85 (176)
++++|+++ +||- -=+.+|..|+++|++|+++-.... .+.|.....+| ..+..-++| ++..-..+..+
T Consensus 3 ~~~~vvIi-----GaGi--sGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g-~~~d~G~h~----~~~~~~~~~~l 70 (479)
T PRK07208 3 NKKSVVII-----GAGP--AGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG-NRFDIGGHR----FFSKSPEVMDL 70 (479)
T ss_pred CCCcEEEE-----CcCH--HHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC-ceEccCCce----eccCCHHHHHH
Confidence 45577765 2232 224678899999999999987543 34454444444 444433333 33334455666
Q ss_pred HHHH
Q 046633 86 LRCL 89 (176)
Q Consensus 86 lR~l 89 (176)
++.+
T Consensus 71 ~~~l 74 (479)
T PRK07208 71 WNEI 74 (479)
T ss_pred HHHh
Confidence 6665
No 494
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=24.17 E-value=1.7e+02 Score=25.11 Aligned_cols=41 Identities=0% Similarity=-0.129 Sum_probs=33.1
Q ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHCC-CeEEEEEee
Q 046633 7 SKLNVAIIHPDLGIGGAERLIVDAAVELVSHG-HNVHVFTAH 47 (176)
Q Consensus 7 ~~~kI~~~hpdLgiGGAERlvvdlA~~l~~~G-h~V~l~T~~ 47 (176)
++..|+++.|+++....+++.-.+-.+.++.| +++.+.++.
T Consensus 23 ~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~ 64 (330)
T PRK15395 23 ADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAPDVQLLMNDSQ 64 (330)
T ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 45789999999988888999888888888886 577775654
No 495
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=24.15 E-value=2.4e+02 Score=23.99 Aligned_cols=43 Identities=16% Similarity=0.331 Sum_probs=34.7
Q ss_pred cCCCceEEEEeCCCCCCchHHHHHHHHHHHHH-CCCeEEEEEee
Q 046633 5 RSSKLNVAIIHPDLGIGGAERLIVDAAVELVS-HGHNVHVFTAH 47 (176)
Q Consensus 5 ~~~~~kI~~~hpdLgiGGAERlvvdlA~~l~~-~Gh~V~l~T~~ 47 (176)
+..+|||+++-=++-.|=.-+.+.+.+.+... .|.+|.++-..
T Consensus 23 ~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~ 66 (219)
T TIGR02690 23 KPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPP 66 (219)
T ss_pred CCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcc
Confidence 34568999999999988888877777777666 79999998754
No 496
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=24.09 E-value=95 Score=24.75 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.9
Q ss_pred CCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 20 IGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
.||+..+-..+|.+|.++|++|.+..
T Consensus 12 tG~s~~iG~~la~~l~~~g~~v~~~~ 37 (247)
T PRK12935 12 TGGAKGIGKAITVALAQEGAKVVINY 37 (247)
T ss_pred ECCCCHHHHHHHHHHHHcCCEEEEEc
Confidence 67888999999999999999998654
No 497
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=24.07 E-value=93 Score=24.82 Aligned_cols=26 Identities=23% Similarity=0.173 Sum_probs=22.0
Q ss_pred CchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 21 GGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 21 GGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
||+.-+=..+|.+|.++|++|.++..
T Consensus 12 Gas~gIG~~ia~~l~~~G~~vi~~~r 37 (248)
T TIGR01832 12 GANTGLGQGIAVGLAEAGADIVGAGR 37 (248)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 66667888999999999999988764
No 498
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.99 E-value=1.6e+02 Score=25.76 Aligned_cols=36 Identities=19% Similarity=0.080 Sum_probs=28.7
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEE
Q 046633 9 LNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFT 45 (176)
Q Consensus 9 ~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T 45 (176)
|||+++ +.-+-..+..++-.++..|.++|++|.+..
T Consensus 1 m~v~iv-~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~ 36 (277)
T PRK03708 1 MRFGIV-ARRDKEEALKLAYRVYDFLKVSGYEVVVDS 36 (277)
T ss_pred CEEEEE-ecCCCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 677765 333467888888889999999999999864
No 499
>PF07836 DmpG_comm: DmpG-like communication domain; InterPro: IPR012425 This domain is found towards the C-terminal region of various aldolase enzymes. It consists of five alpha-helices, four of which form an antiparallel helical bundle that plugs the C terminus of the N-terminal TIM barrel domain []. The communication domain is thought to play an important role in the heterodimerisation of the enzyme []. Members of this entry heterodimerise with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase [].; GO: 0016833 oxo-acid-lyase activity, 0019439 aromatic compound catabolic process; PDB: 1NVM_E.
Probab=23.98 E-value=64 Score=23.01 Aligned_cols=18 Identities=44% Similarity=0.859 Sum_probs=13.6
Q ss_pred CCchHHHHHHHHHHHHHC
Q 046633 20 IGGAERLIVDAAVELVSH 37 (176)
Q Consensus 20 iGGAERlvvdlA~~l~~~ 37 (176)
.||-|-.++|.|..|+++
T Consensus 49 VgGQED~I~dvA~~La~~ 66 (66)
T PF07836_consen 49 VGGQEDMIIDVALELARK 66 (66)
T ss_dssp -TT-THHHHHHHHHHH--
T ss_pred cCchHHHHHHHHHHHhcC
Confidence 599999999999999874
No 500
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=23.92 E-value=1.5e+02 Score=25.40 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=23.1
Q ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHCCCeEEEEEe
Q 046633 8 KLNVAIIHPDLGIGGAERLIVDAAVELVSHGHNVHVFTA 46 (176)
Q Consensus 8 ~~kI~~~hpdLgiGGAERlvvdlA~~l~~~Gh~V~l~T~ 46 (176)
.+||+|+ |.| ..-..+|..|++.||+|+++..
T Consensus 4 ~~~I~vI----GaG---~mG~~iA~~l~~~g~~V~~~d~ 35 (311)
T PRK06130 4 IQNLAII----GAG---TMGSGIAALFARKGLQVVLIDV 35 (311)
T ss_pred ccEEEEE----CCC---HHHHHHHHHHHhCCCeEEEEEC
Confidence 4678886 222 3444678889999999999864
Done!