BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046635
         (128 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RMR|A Chain A, Crystal Structure Of Hyaloperonospora Arabidopsidis Atr1
           Effector Domain
 pdb|3RMR|B Chain B, Crystal Structure Of Hyaloperonospora Arabidopsidis Atr1
           Effector Domain
 pdb|3RMR|C Chain C, Crystal Structure Of Hyaloperonospora Arabidopsidis Atr1
           Effector Domain
          Length = 260

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 93  QMDALIGQSLGKRVFKIPNPLYYSFDHQI 121
           + D LIG+ +GK  F+ P PL+ ++D  +
Sbjct: 52  ERDDLIGE-IGKHYFEAPGPLHDTYDEAL 79


>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
           Dehydrogenase
 pdb|4EEX|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
           Dehydrogenase
          Length = 348

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 5   GVELAG------MDLRRATDFLAQGYFNPFVGTKVLRVTNSNI 41
           GVE+AG      +DL  A  F A+G   P V T+ L   N  I
Sbjct: 280 GVEVAGSLVGTRLDLAEAFQFGAEGKVKPIVATRKLEEINDII 322


>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
           Dehydrogenase Variant Re1
 pdb|4EEZ|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
           Dehydrogenase Variant Re1
          Length = 348

 Score = 27.3 bits (59), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 5   GVELAG------MDLRRATDFLAQGYFNPFVGTKVLRVTNSNI 41
           GVE+AG      +DL  A  F A+G   P V T+ L   N  I
Sbjct: 280 GVEVAGSLVGTRLDLAEAFQFGAEGKVKPIVATRKLEEINDII 322


>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain
 pdb|3LTL|B Chain B, Crystal Structure Of Human Big1 Sec7 Domain
          Length = 211

 Score = 26.6 bits (57), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 32  KVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAI 78
           + L  +    YV AYS+  +   LHS ++ N  +M   +Y+   R I
Sbjct: 135 QTLFASADTAYVLAYSIIMLTTDLHSPQVKN--KMTKEQYIKMNRGI 179


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,484,119
Number of Sequences: 62578
Number of extensions: 122789
Number of successful extensions: 252
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 5
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)