Query 046635
Match_columns 128
No_of_seqs 110 out of 198
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 02:54:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01675 plant-AP plant acid 100.0 5.3E-35 1.2E-39 235.7 9.7 101 13-117 125-229 (229)
2 TIGR01680 Veg_Stor_Prot vegeta 100.0 1.1E-30 2.5E-35 216.2 9.2 100 13-116 150-255 (275)
3 PF03767 Acid_phosphat_B: HAD 100.0 1E-29 2.2E-34 202.0 5.6 99 15-117 122-229 (229)
4 TIGR01533 lipo_e_P4 5'-nucleot 99.6 8E-15 1.7E-19 120.3 7.8 96 16-121 126-244 (266)
5 COG2503 Predicted secreted aci 98.9 3.1E-09 6.8E-14 88.7 6.2 78 34-121 153-248 (274)
6 PRK11009 aphA acid phosphatase 97.9 1.6E-05 3.5E-10 64.5 5.3 92 13-115 119-219 (237)
7 TIGR01672 AphA HAD superfamily 89.6 0.48 1E-05 38.5 3.9 85 13-108 119-209 (237)
8 smart00775 LNS2 LNS2 domain. T 84.2 10 0.00022 28.5 8.2 90 13-108 32-147 (157)
9 TIGR00216 ispH_lytB (E)-4-hydr 67.8 21 0.00045 30.1 6.4 79 15-94 20-123 (280)
10 PRK01045 ispH 4-hydroxy-3-meth 60.4 35 0.00075 29.1 6.5 79 14-93 20-122 (298)
11 PRK12360 4-hydroxy-3-methylbut 51.7 58 0.0013 27.5 6.4 64 27-93 34-125 (281)
12 TIGR01689 EcbF-BcbF capsule bi 50.3 48 0.001 24.6 5.1 36 21-61 38-88 (126)
13 PF08235 LNS2: LNS2 (Lipin/Ned 48.2 1.3E+02 0.0028 23.4 7.5 87 16-108 35-147 (157)
14 PLN02821 1-hydroxy-2-methyl-2- 46.2 76 0.0016 29.0 6.6 85 4-94 118-235 (460)
15 cd01427 HAD_like Haloacid deha 46.1 53 0.0011 21.3 4.3 86 13-102 29-131 (139)
16 PHA02530 pseT polynucleotide k 45.0 63 0.0014 25.7 5.4 87 13-100 192-285 (300)
17 PRK13371 4-hydroxy-3-methylbut 42.5 91 0.002 27.8 6.4 59 33-94 79-167 (387)
18 PRK00087 4-hydroxy-3-methylbut 40.4 88 0.0019 28.8 6.2 78 15-93 21-122 (647)
19 PF03698 UPF0180: Uncharacteri 39.2 39 0.00085 23.8 3.0 19 72-91 10-28 (80)
20 TIGR02253 CTE7 HAD superfamily 36.5 1.1E+02 0.0023 22.8 5.2 27 88-114 171-199 (221)
21 cd00860 ThrRS_anticodon ThrRS 33.4 94 0.002 19.8 4.0 43 36-93 19-61 (91)
22 PRK13762 tRNA-modifying enzyme 33.3 32 0.0007 29.0 2.1 45 72-121 8-58 (322)
23 PF05818 TraT: Enterobacterial 33.1 61 0.0013 26.7 3.6 18 70-87 37-54 (215)
24 PF13419 HAD_2: Haloacid dehal 31.9 1.4E+02 0.003 20.5 4.8 85 12-100 81-166 (176)
25 cd00738 HGTP_anticodon HGTP an 30.9 1.4E+02 0.0029 19.1 4.4 42 37-93 23-64 (94)
26 PF08924 DUF1906: Domain of un 29.8 1.5E+02 0.0033 21.9 5.1 56 32-92 4-60 (136)
27 cd00861 ProRS_anticodon_short 29.7 1.3E+02 0.0027 19.5 4.1 44 36-94 22-65 (94)
28 PF00479 G6PD_N: Glucose-6-pho 29.5 32 0.00069 26.9 1.4 58 29-86 113-172 (183)
29 COG3453 Uncharacterized protei 29.2 42 0.00091 25.9 2.0 68 11-93 1-70 (130)
30 COG3603 Uncharacterized conser 27.4 1E+02 0.0023 23.7 3.8 52 27-87 73-127 (128)
31 TIGR01548 HAD-SF-IA-hyp1 haloa 27.1 2E+02 0.0043 21.3 5.3 78 14-100 112-194 (197)
32 PRK10826 2-deoxyglucose-6-phos 26.3 2.6E+02 0.0057 21.0 5.9 37 76-112 155-194 (222)
33 PF02542 YgbB: YgbB family; I 24.9 86 0.0019 24.6 3.1 48 36-87 44-92 (157)
34 cd04882 ACT_Bt0572_2 C-termina 24.7 59 0.0013 19.5 1.8 16 72-87 50-65 (65)
35 TIGR01428 HAD_type_II 2-haloal 24.6 2.1E+02 0.0045 21.1 5.0 24 87-110 168-192 (198)
36 PLN02862 2-C-methyl-D-erythrit 22.7 99 0.0021 25.7 3.1 50 36-90 103-153 (216)
37 PF08373 RAP: RAP domain; Int 22.5 79 0.0017 19.4 2.0 24 74-97 22-45 (58)
38 TIGR03351 PhnX-like phosphonat 21.1 2.1E+02 0.0046 21.3 4.5 84 21-111 101-192 (220)
39 TIGR02252 DREG-2 REG-2-like, H 20.8 2E+02 0.0043 21.2 4.2 24 77-100 168-194 (203)
40 COG2852 Very-short-patch-repai 20.8 1.5E+02 0.0032 22.9 3.6 37 53-89 64-100 (129)
41 KOG0912 Thiol-disulfide isomer 20.5 1.4E+02 0.003 26.7 3.8 53 33-92 212-267 (375)
No 1
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=100.00 E-value=5.3e-35 Score=235.69 Aligned_cols=101 Identities=25% Similarity=0.298 Sum_probs=91.4
Q ss_pred hHHHHHHHhcCccccccchh----hhHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEEE
Q 046635 13 LRRATDFLAQGYFNPFVGTK----VLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITG 88 (128)
Q Consensus 13 ~r~~~~~~~q~~~~~~~~~~----~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIvg 88 (128)
...+++.+.+.++.+|+.|. ..++|.+||+++||++ |++|+||+.++..+++++|||++|++|+++||+||+
T Consensus 125 al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~----~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~ 200 (229)
T TIGR01675 125 GLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTG----WKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWG 200 (229)
T ss_pred HHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCC----cCeeeecCCCCCCchHhHHHHHHHHHHHhCCceEEE
Confidence 46677888777777777554 4568999999999999 999999998778889999999999999999999999
Q ss_pred EcCCccccccCCCCcceeeecCCcccccc
Q 046635 89 LISNQMDALIGQSLGKRVFKIPNPLYYSF 117 (128)
Q Consensus 89 nIGDQwSDL~G~~~g~RtFKLPNPmYyi~ 117 (128)
|||||||||.|+++++|+||||||||||+
T Consensus 201 ~iGDq~sDl~G~~~~~RtFKLPNPmYyi~ 229 (229)
T TIGR01675 201 NIGDQWSDLLGSPPGRRTFKLPNPMYYVP 229 (229)
T ss_pred EECCChHHhcCCCccCceeeCCCCcccCC
Confidence 99999999999999999999999999985
No 2
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=99.97 E-value=1.1e-30 Score=216.19 Aligned_cols=100 Identities=26% Similarity=0.305 Sum_probs=87.7
Q ss_pred hHHHHHHHhcCccccccchh----hhHHHHHHHHHcCCCcccccCCceeeecCCC-CCcchhhhhHHHHHHHHHcCceEE
Q 046635 13 LRRATDFLAQGYFNPFVGTK----VLRVTNSNIYVFAYSLEFVENGLHSCRLDNE-MQMDSREYLSRRRAILQKEGFHIT 87 (128)
Q Consensus 13 ~r~~~~~~~q~~~~~~~~~~----~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~-~~~sa~~YKS~~R~~Le~~GYrIv 87 (128)
...++..+.+.++.+|+.+. ..++|.+||+++||++ |++|+||++++ ..+++++|||.+|++|+++||+||
T Consensus 150 al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~----~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv 225 (275)
T TIGR01680 150 TLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHT----WEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIV 225 (275)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCC----cceeeecCCCCCccchhHHHHHHHHHHHHHcCceEE
Confidence 45667777777777776544 5679999999999998 99999998864 577999999999999999999999
Q ss_pred EEcCCccccccCCCCc-ceeeecCCccccc
Q 046635 88 GLISNQMDALIGQSLG-KRVFKIPNPLYYS 116 (128)
Q Consensus 88 gnIGDQwSDL~G~~~g-~RtFKLPNPmYyi 116 (128)
+|||||||||.|++.+ .|+||||||||-.
T Consensus 226 ~~iGDq~sDl~G~~~g~~RtFKLPNP~~~~ 255 (275)
T TIGR01680 226 GIIGDQWNDLKGEHRGAIRSFKLPNPCTTF 255 (275)
T ss_pred EEECCCHHhccCCCccCcceecCCCccccc
Confidence 9999999999999985 6999999999864
No 3
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=99.96 E-value=1e-29 Score=201.96 Aligned_cols=99 Identities=24% Similarity=0.375 Sum_probs=78.9
Q ss_pred HHHHHHhcCcccccc-chh---hhHHHHHHHHHcCCCcccccCCceeeecCCC-CCcchhhhhHHHHHHHHHcCceEEEE
Q 046635 15 RATDFLAQGYFNPFV-GTK---VLRVTNSNIYVFAYSLEFVENGLHSCRLDNE-MQMDSREYLSRRRAILQKEGFHITGL 89 (128)
Q Consensus 15 ~~~~~~~q~~~~~~~-~~~---~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~-~~~sa~~YKS~~R~~Le~~GYrIvgn 89 (128)
.++..+.+.++.+|+ +++ .+++|++||+++||++ |++|+||++++ ..+++.+||+++|++|+++||+||++
T Consensus 122 ~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~----~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~Ii~~ 197 (229)
T PF03767_consen 122 ELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPG----WDHLILRPDKDPSKKSAVEYKSERRKEIEKKGYRIIAN 197 (229)
T ss_dssp HHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTST----BSCGEEEEESSTSS------SHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCc----cchhccccccccccccccccchHHHHHHHHcCCcEEEE
Confidence 444455555555554 444 6779999999999998 99999999887 67789999999999999999999999
Q ss_pred cCCccccccC----CCCcceeeecCCcccccc
Q 046635 90 ISNQMDALIG----QSLGKRVFKIPNPLYYSF 117 (128)
Q Consensus 90 IGDQwSDL~G----~~~g~RtFKLPNPmYyi~ 117 (128)
||||||||.| ++.+.|+|||||||||+|
T Consensus 198 iGD~~~D~~~~~~~~~~~~r~f~lPNp~Yg~w 229 (229)
T PF03767_consen 198 IGDQLSDFSGAKTAGARAERWFKLPNPMYGSW 229 (229)
T ss_dssp EESSGGGCHCTHHHHHHHTTEEE-TTSSSSHH
T ss_pred eCCCHHHhhcccccccccceEEEcCCCCCCCC
Confidence 9999999999 776789999999999987
No 4
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.56 E-value=8e-15 Score=120.31 Aligned_cols=96 Identities=21% Similarity=0.331 Sum_probs=72.1
Q ss_pred HHHHH-hcCccccccchh---hhHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEEEEcC
Q 046635 16 ATDFL-AQGYFNPFVGTK---VLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITGLIS 91 (128)
Q Consensus 16 ~~~~~-~q~~~~~~~~~~---~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIvgnIG 91 (128)
+...+ .+|.-.-+++.+ ..+.|.+||.+.|++. .+.++|++|+.. .+|..+|+.|++ ||+|+++||
T Consensus 126 ~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~--~~~d~lllr~~~-------~~K~~rr~~I~~-~y~Ivl~vG 195 (266)
T TIGR01533 126 FLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQ--ADEEHLLLKKDK-------SSKESRRQKVQK-DYEIVLLFG 195 (266)
T ss_pred HHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCC--CCcceEEeCCCC-------CCcHHHHHHHHh-cCCEEEEEC
Confidence 34444 344444445554 4668999999999986 446899999643 258888888875 899999999
Q ss_pred CccccccCC-------------------CCcceeeecCCccccccchhh
Q 046635 92 NQMDALIGQ-------------------SLGKRVFKIPNPLYYSFDHQI 121 (128)
Q Consensus 92 DQwSDL~G~-------------------~~g~RtFKLPNPmYyi~e~~~ 121 (128)
|||+||.+. ..|.+.|-||||||..||.=.
T Consensus 196 D~~~Df~~~~~~~~~~~~r~~~v~~~~~~fG~~~i~lPNp~YG~we~~~ 244 (266)
T TIGR01533 196 DNLLDFDDFFYKDKESQDRQALVLQNQEKFGKKFIILPNPMYGSWEGAI 244 (266)
T ss_pred CCHHHhhhhhccCcchHHHHHHHHHHHHHhCCCeEEecCCCCcchhhhh
Confidence 999999763 234678899999999998644
No 5
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=98.89 E-value=3.1e-09 Score=88.71 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=65.2
Q ss_pred hHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEEEEcCCccccccCC-------------
Q 046635 34 LRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQ------------- 100 (128)
Q Consensus 34 ~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIvgnIGDQwSDL~G~------------- 100 (128)
..+|.+||++.|+|+ +.-.+++|...... |+.+|+.+++ +|.||.-|||+..|+.-.
T Consensus 153 ~~~T~~nLk~~g~~~--~~~~~~llkk~~k~-------Ke~R~~~v~k-~~~iVm~vGDNl~DF~d~~~k~~~~eR~Alv 222 (274)
T COG2503 153 KDGTIENLKSEGLPQ--VLESHLLLKKDKKS-------KEVRRQAVEK-DYKIVMLVGDNLDDFGDNAYKKAEAERRALV 222 (274)
T ss_pred cchhHHHHHHcCccc--ccccceEEeeCCCc-------HHHHHHHHhh-ccceeeEecCchhhhcchhhhhhhHHHHHHH
Confidence 568999999999997 66788888854433 8888888777 999999999999999543
Q ss_pred -----CCcceeeecCCccccccchhh
Q 046635 101 -----SLGKRVFKIPNPLYYSFDHQI 121 (128)
Q Consensus 101 -----~~g~RtFKLPNPmYyi~e~~~ 121 (128)
..|++.+-||||||.-||.=+
T Consensus 223 ~~~~~~FGk~~Ii~pN~~YG~wE~gi 248 (274)
T COG2503 223 KQNQKKFGKKFIILPNSMYGGWEGGI 248 (274)
T ss_pred HHHHHHhCceEEEecCCccCcccchh
Confidence 457788899999999999865
No 6
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.94 E-value=1.6e-05 Score=64.49 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=62.4
Q ss_pred hHHHHHHHhcCcccccc-chh---hhHHHHHHHHH-cCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEE
Q 046635 13 LRRATDFLAQGYFNPFV-GTK---VLRVTNSNIYV-FAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHIT 87 (128)
Q Consensus 13 ~r~~~~~~~q~~~~~~~-~~~---~~~aT~~NL~~-aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIv 87 (128)
.+.+...+..-+...++ +++ ..+.|.+||.+ .|.|. .++-.+++-.+. .+|..++..+++.|..|
T Consensus 119 a~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~--~~~f~vil~gd~-------~~K~~K~~~l~~~~i~I- 188 (237)
T PRK11009 119 ARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPA--DNMNPVIFAGDK-------PGQYTKTQWLKKKNIRI- 188 (237)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCc--ccceeEEEcCCC-------CCCCCHHHHHHhcCCeE-
Confidence 45556666444455554 554 56789999997 99963 123355554332 26778888888877644
Q ss_pred EEcCCccccccCC----CCcceeeecCCcccc
Q 046635 88 GLISNQMDALIGQ----SLGKRVFKIPNPLYY 115 (128)
Q Consensus 88 gnIGDQwSDL~G~----~~g~RtFKLPNPmYy 115 (128)
-|||+|+|+.+. -.+.|.+..|||+|-
T Consensus 189 -~IGDs~~Di~aA~~AGi~~I~v~~G~~~~~~ 219 (237)
T PRK11009 189 -FYGDSDNDITAAREAGARGIRILRAANSTYK 219 (237)
T ss_pred -EEcCCHHHHHHHHHcCCcEEEEecCCCCCCC
Confidence 499999999775 334578899999994
No 7
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=89.60 E-value=0.48 Score=38.50 Aligned_cols=85 Identities=12% Similarity=0.074 Sum_probs=51.3
Q ss_pred hHHHHHHHhcCcccccc-chh---hhHHHHHHHH-HcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEE
Q 046635 13 LRRATDFLAQGYFNPFV-GTK---VLRVTNSNIY-VFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHIT 87 (128)
Q Consensus 13 ~r~~~~~~~q~~~~~~~-~~~---~~~aT~~NL~-~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIv 87 (128)
.+.+.+.+.+-+...++ +.+ -.+.|.++|. ..|++. ...+++-..... .+|...+..|++.| |+
T Consensus 119 a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~----~f~~i~~~d~~~-----~~Kp~~~~~l~~~~--i~ 187 (237)
T TIGR01672 119 ARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPA----MNPVIFAGDKPG-----QYQYTKTQWIQDKN--IR 187 (237)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCch----heeEEECCCCCC-----CCCCCHHHHHHhCC--Ce
Confidence 34455556555555555 444 2566788877 589986 345565543321 13455556666655 45
Q ss_pred EEcCCccccccCC-CCcceeee
Q 046635 88 GLISNQMDALIGQ-SLGKRVFK 108 (128)
Q Consensus 88 gnIGDQwSDL~G~-~~g~RtFK 108 (128)
.-|||.++|+.+. .+|.++.-
T Consensus 188 i~vGDs~~DI~aAk~AGi~~I~ 209 (237)
T TIGR01672 188 IHYGDSDNDITAAKEAGARGIR 209 (237)
T ss_pred EEEeCCHHHHHHHHHCCCCEEE
Confidence 6799999999765 55555443
No 8
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=84.22 E-value=10 Score=28.52 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=57.4
Q ss_pred hHHHHHHHhcCccccccch-h---hhHHHHHHHHH---cC--CCcccccCCceeeecCCCC--------CcchhhhhHHH
Q 046635 13 LRRATDFLAQGYFNPFVGT-K---VLRVTNSNIYV---FA--YSLEFVENGLHSCRLDNEM--------QMDSREYLSRR 75 (128)
Q Consensus 13 ~r~~~~~~~q~~~~~~~~~-~---~~~aT~~NL~~---aG--Y~~~~~~~~~LiLR~~~~~--------~~sa~~YKS~~ 75 (128)
...+++++.+.+...++.| + ....|.+-|.. .| .|. ..+++++.... .....+||.+.
T Consensus 32 ~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~-----g~li~~~g~~~~~~~~e~i~~~~~~~K~~~ 106 (157)
T smart00775 32 VAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPH-----GPVLLSPDRLFAALHREVISKKPEVFKIAC 106 (157)
T ss_pred HHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCC-----ceEEEcCCcchhhhhcccccCCHHHHHHHH
Confidence 4567777666555554444 4 22245666666 35 553 57777765432 23455689888
Q ss_pred HHHHHH----cCceEEEEcCCcccccc-----CCCCcceeee
Q 046635 76 RAILQK----EGFHITGLISNQMDALI-----GQSLGKRVFK 108 (128)
Q Consensus 76 R~~Le~----~GYrIvgnIGDQwSDL~-----G~~~g~RtFK 108 (128)
=+.|.+ .+..+++-+||..+|.. |-+.+ |.|-
T Consensus 107 l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~~~-~i~~ 147 (157)
T smart00775 107 LRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPPS-RIFT 147 (157)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCChh-hEEE
Confidence 888877 58999999999889883 44554 5553
No 9
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=67.77 E-value=21 Score=30.14 Aligned_cols=79 Identities=15% Similarity=0.029 Sum_probs=43.5
Q ss_pred HHHHHHhcCccccccchh--hhHHHHHHHHHcCC-C-cc---ccc-CCceeeecCCC-----------------CCcchh
Q 046635 15 RATDFLAQGYFNPFVGTK--VLRVTNSNIYVFAY-S-LE---FVE-NGLHSCRLDNE-----------------MQMDSR 69 (128)
Q Consensus 15 ~~~~~~~q~~~~~~~~~~--~~~aT~~NL~~aGY-~-~~---~~~-~~~LiLR~~~~-----------------~~~sa~ 69 (128)
.+.+.+.+..-..+..+- ++..-++.|++.|- . .+ .+. -+.+|+|.-+- ..|+-+
T Consensus 20 ~a~~~~~~~~~~iy~lG~iIHN~~Vv~~L~~~Gv~~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~~~gl~viDaTCP~V 99 (280)
T TIGR00216 20 MAEEALKESGKPVYTLGPIVHNPQVVERLRERGVFFFLEDLDEVAAGDTVIIRAHGVPPEVREELEKKGLEVIDATCPLV 99 (280)
T ss_pred HHHHHHhhcCCCeEEecCCccCHHHHHHHHHCCCEEeecCcccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCccc
Confidence 344444443333444444 88899999999994 2 11 111 35688887431 122222
Q ss_pred hhhHHHHHHHHHcCceEEEEcCCcc
Q 046635 70 EYLSRRRAILQKEGFHITGLISNQM 94 (128)
Q Consensus 70 ~YKS~~R~~Le~~GYrIvgnIGDQw 94 (128)
.-=-..=+++.++||.|+ .+||..
T Consensus 100 ~kv~~~v~~~~~~Gy~ii-iiG~~~ 123 (280)
T TIGR00216 100 TKVHNAVKKYAKEGYHVI-LIGKKN 123 (280)
T ss_pred HHHHHHHHHHHhCCCEEE-EEeCCC
Confidence 111111134668999999 788853
No 10
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=60.38 E-value=35 Score=29.09 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=44.6
Q ss_pred HHHHHHHhcCccccccchh--hhHHHHHHHHHcCCCc----cccc-CCceeeecCCC-----------------CCcchh
Q 046635 14 RRATDFLAQGYFNPFVGTK--VLRVTNSNIYVFAYSL----EFVE-NGLHSCRLDNE-----------------MQMDSR 69 (128)
Q Consensus 14 r~~~~~~~q~~~~~~~~~~--~~~aT~~NL~~aGY~~----~~~~-~~~LiLR~~~~-----------------~~~sa~ 69 (128)
..|.+.+.+..-..+..+- ++..-++.|++.|-.. +.+. -+.+|+|.-+- ..|+-+
T Consensus 20 ~~a~~~~~~~~~~iytlG~iIHN~~vv~~L~~~GV~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP~V 99 (298)
T PRK01045 20 EIVERALEKYGAPIYVRHEIVHNRYVVERLEKKGAIFVEELDEVPDGAIVIFSAHGVSPAVREEAKERGLTVIDATCPLV 99 (298)
T ss_pred HHHHHHHHhcCCCeEEEecCccCHHHHHHHHHCCCEEecCcccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCccc
Confidence 4455555554433344444 8889999999999843 1111 45788887441 122222
Q ss_pred hhhHHHHHHHHHcCceEEEEcCCc
Q 046635 70 EYLSRRRAILQKEGFHITGLISNQ 93 (128)
Q Consensus 70 ~YKS~~R~~Le~~GYrIvgnIGDQ 93 (128)
.-=-..=+++.++||.|+ .+||.
T Consensus 100 ~k~~~~v~~~~~~Gy~vv-i~G~~ 122 (298)
T PRK01045 100 TKVHKEVARMSREGYEII-LIGHK 122 (298)
T ss_pred hHHHHHHHHHHhCCCEEE-EEeCC
Confidence 111111124567899998 78875
No 11
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=51.73 E-value=58 Score=27.54 Aligned_cols=64 Identities=8% Similarity=0.026 Sum_probs=39.0
Q ss_pred cccchh--hhHHHHHHHHHcCCCcccc---------cCCceeeecCCC-----------------CCcchhhhhHHHHHH
Q 046635 27 PFVGTK--VLRVTNSNIYVFAYSLEFV---------ENGLHSCRLDNE-----------------MQMDSREYLSRRRAI 78 (128)
Q Consensus 27 ~~~~~~--~~~aT~~NL~~aGY~~~~~---------~~~~LiLR~~~~-----------------~~~sa~~YKS~~R~~ 78 (128)
.+..+- ++..-++.|++.|-.. + +-+.+|+|.-+- ..|+-+.-=-..=++
T Consensus 34 vy~lG~iVHN~~Vv~~L~~~Gv~~--v~~~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~ 111 (281)
T PRK12360 34 IYTLGPLIHNNQVVSDLEEKGVKT--IEESEIDSLKEGDVVIIRSHGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEE 111 (281)
T ss_pred eEEecCCcCCHHHHHHHHHCcCEE--ECcCchhhCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHH
Confidence 344444 8889999999999853 3 134688887431 123322111111234
Q ss_pred HHHcCceEEEEcCCc
Q 046635 79 LQKEGFHITGLISNQ 93 (128)
Q Consensus 79 Le~~GYrIvgnIGDQ 93 (128)
+.++||.|+ .|||.
T Consensus 112 ~~~~Gy~iv-iiG~~ 125 (281)
T PRK12360 112 YYNKGYSII-IVGDK 125 (281)
T ss_pred HHhCCCEEE-EEcCC
Confidence 668899999 88885
No 12
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=50.28 E-value=48 Score=24.62 Aligned_cols=36 Identities=6% Similarity=-0.104 Sum_probs=30.0
Q ss_pred hcCccccccchh---hh------------HHHHHHHHHcCCCcccccCCceeeecC
Q 046635 21 AQGYFNPFVGTK---VL------------RVTNSNIYVFAYSLEFVENGLHSCRLD 61 (128)
Q Consensus 21 ~q~~~~~~~~~~---~~------------~aT~~NL~~aGY~~~~~~~~~LiLR~~ 61 (128)
.+|....+++++ .. ..|.+-|.+.|.| +++|+||.|
T Consensus 38 ~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ip-----Yd~l~~~kp 88 (126)
T TIGR01689 38 ALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVP-----YDEIYVGKP 88 (126)
T ss_pred HCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCC-----CceEEeCCC
Confidence 678888888888 22 3899999999998 699999986
No 13
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=48.17 E-value=1.3e+02 Score=23.42 Aligned_cols=87 Identities=17% Similarity=0.074 Sum_probs=60.5
Q ss_pred HHHHHhcCccccccchh----hhHHHHHHHHHc-----CCCcccccCCceeeecCC--------CCCcchhhhhHHHHHH
Q 046635 16 ATDFLAQGYFNPFVGTK----VLRVTNSNIYVF-----AYSLEFVENGLHSCRLDN--------EMQMDSREYLSRRRAI 78 (128)
Q Consensus 16 ~~~~~~q~~~~~~~~~~----~~~aT~~NL~~a-----GY~~~~~~~~~LiLR~~~--------~~~~sa~~YKS~~R~~ 78 (128)
+++.+.+.+..++..+. ....|..=|... ++|. ..+++.|.. --.....+||...=+.
T Consensus 35 l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~-----Gpv~~sP~~l~~al~rEvi~~~p~~fK~~~L~~ 109 (157)
T PF08235_consen 35 LYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPD-----GPVLLSPDSLFSALHREVISKDPEEFKIACLRD 109 (157)
T ss_pred HHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCC-----CCEEECCcchhhhhhccccccChHHHHHHHHHH
Confidence 45566665555544443 455787777777 8884 777776542 1234678999999999
Q ss_pred HHHc----CceEEEEcCCcccccc-----CCCCcceeee
Q 046635 79 LQKE----GFHITGLISNQMDALI-----GQSLGKRVFK 108 (128)
Q Consensus 79 Le~~----GYrIvgnIGDQwSDL~-----G~~~g~RtFK 108 (128)
|... +-.+.+-+|+-.+|.. |-+.+ |.|-
T Consensus 110 l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip~~-rIF~ 147 (157)
T PF08235_consen 110 LRALFPPDGNPFYAGFGNRSTDVIAYKAVGIPKS-RIFI 147 (157)
T ss_pred HHHhcCCCCCeEEEecCCcHHHHHHHHHcCCChh-hEEE
Confidence 9886 9999999999999984 44444 5553
No 14
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=46.20 E-value=76 Score=29.02 Aligned_cols=85 Identities=12% Similarity=-0.014 Sum_probs=47.6
Q ss_pred eceeecchhhHHHHHHHhcCccccccchh---hhHHHHHHHHHcCCCccccc-------------CCceeeecCC-----
Q 046635 4 FGVELAGMDLRRATDFLAQGYFNPFVGTK---VLRVTNSNIYVFAYSLEFVE-------------NGLHSCRLDN----- 62 (128)
Q Consensus 4 ~~~~~~~~~~r~~~~~~~q~~~~~~~~~~---~~~aT~~NL~~aGY~~~~~~-------------~~~LiLR~~~----- 62 (128)
|||+-| +..|++.+.+..-.|++... ++..-++.|++.|-.. ++ -+-+|+|.-+
T Consensus 118 ~GVeRA---V~~A~ea~~~~p~~~Iy~lgeIIHNp~Vv~~L~~~GV~~--I~~~~~~~~~~~v~~gdvVIirAHGvs~~~ 192 (460)
T PLN02821 118 WGVERA---VQIAYEARKQFPDEKLWITNEIIHNPTVNKRLEEMNVQF--IEVEEGGKDFSVVGEGDVVILPAFGASVEE 192 (460)
T ss_pred ccHHHH---HHHHHHHHhhCCCCCeEEecCCccCHHHHHHHHHCCCEE--ecccccccccccCCCCCEEEEeCCCCCHHH
Confidence 355433 45566665554223444443 7888999999999753 32 2457888643
Q ss_pred ------------CCCcchhhhhHHHHHHHHHcCceEEEEcCCcc
Q 046635 63 ------------EMQMDSREYLSRRRAILQKEGFHITGLISNQM 94 (128)
Q Consensus 63 ------------~~~~sa~~YKS~~R~~Le~~GYrIvgnIGDQw 94 (128)
|..|+-+.==-..=+++.++||+|| .+||..
T Consensus 193 ~~~l~~kg~~IVDaTCP~V~KV~~~v~k~~k~gy~iI-I~Gk~~ 235 (460)
T PLN02821 193 MQTLNDKNVQIVDTTCPWVSKVWNTVEKHKKKDYTSV-IHGKYA 235 (460)
T ss_pred HHHHHHCCCeEEecCCcchHHHHHHHHHHHhCCCEEE-EECCCC
Confidence 1123222111111124567899999 888853
No 15
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=46.11 E-value=53 Score=21.27 Aligned_cols=86 Identities=7% Similarity=-0.057 Sum_probs=43.0
Q ss_pred hHHHHHHHhcCcccc-ccchhhhHHHHHHHHHcCCCcccccCCceeeecCCCCC----------------cchhhhhHHH
Q 046635 13 LRRATDFLAQGYFNP-FVGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQ----------------MDSREYLSRR 75 (128)
Q Consensus 13 ~r~~~~~~~q~~~~~-~~~~~~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~----------------~sa~~YKS~~ 75 (128)
+..+.+.|.+-++.. +++++-.......+...|+... .+.++-....... ++....+...
T Consensus 29 ~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (139)
T cd01427 29 VKEALKELKEKGIKLALATNKSRREVLELLEELGLDDY---FDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAA 105 (139)
T ss_pred HHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchh---hhheeccchhhhhcccccccccccccccCCCCHHHHHHH
Confidence 344555555544444 4455566667777777886320 1222221111110 2222333333
Q ss_pred HHHHHHcCceEEEEcCCccccccCCCC
Q 046635 76 RAILQKEGFHITGLISNQMDALIGQSL 102 (128)
Q Consensus 76 R~~Le~~GYrIvgnIGDQwSDL~G~~~ 102 (128)
.+++... +.-+.-|||.++|+.-...
T Consensus 106 ~~~~~~~-~~~~~~igD~~~d~~~~~~ 131 (139)
T cd01427 106 LKLLGVD-PEEVLMVGDSLNDIEMAKA 131 (139)
T ss_pred HHHcCCC-hhhEEEeCCCHHHHHHHHH
Confidence 3343333 4556689999999865443
No 16
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=44.97 E-value=63 Score=25.66 Aligned_cols=87 Identities=5% Similarity=-0.153 Sum_probs=50.7
Q ss_pred hHHHHHHHhcCcc-ccccchh---hhHHHHHHHHHcC-CCc--ccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCce
Q 046635 13 LRRATDFLAQGYF-NPFVGTK---VLRVTNSNIYVFA-YSL--EFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFH 85 (128)
Q Consensus 13 ~r~~~~~~~q~~~-~~~~~~~---~~~aT~~NL~~aG-Y~~--~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYr 85 (128)
...+.+.|.+-+. .-+++++ ..+.|.++|...| |-. ...+...++||+.... ++.-+.+...-+++....+.
T Consensus 192 ~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~-kp~p~~~~~~l~~~~~~~~~ 270 (300)
T PHA02530 192 VVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDK-RPDDVVKEEIFWEKIAPKYD 270 (300)
T ss_pred HHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCC-CCcHHHHHHHHHHHhccCce
Confidence 3445556644444 4455555 4557888888887 210 0122356677775543 44443343333333333578
Q ss_pred EEEEcCCccccccCC
Q 046635 86 ITGLISNQMDALIGQ 100 (128)
Q Consensus 86 IvgnIGDQwSDL~G~ 100 (128)
+..-|||...|+.+.
T Consensus 271 ~~~~vgD~~~d~~~a 285 (300)
T PHA02530 271 VLLAVDDRDQVVDMW 285 (300)
T ss_pred EEEEEcCcHHHHHHH
Confidence 999999999999774
No 17
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=42.46 E-value=91 Score=27.78 Aligned_cols=59 Identities=5% Similarity=-0.062 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHcCCCccccc-------------CCceeeecCC-----------------CCCcchhhhhHHHHHHHHHc
Q 046635 33 VLRVTNSNIYVFAYSLEFVE-------------NGLHSCRLDN-----------------EMQMDSREYLSRRRAILQKE 82 (128)
Q Consensus 33 ~~~aT~~NL~~aGY~~~~~~-------------~~~LiLR~~~-----------------~~~~sa~~YKS~~R~~Le~~ 82 (128)
++...++.|++.|-.. ++ -+.+|+|.-+ |..|+-+.-=-..=+++.++
T Consensus 79 HNp~Vv~~L~~~Gv~~--v~~~~~~~~~~~v~~~~~VIIrAHGv~~~v~~~~~~rgl~iiDATCP~V~kvh~~v~~~~~~ 156 (387)
T PRK13371 79 HNPSVNQHLREMGVRF--IPVEKGVKDFSVVTPGDVVILPAFGATVQEMQLLNEKGCHIVDTTCPWVSKVWNTVEKHKKK 156 (387)
T ss_pred CCHHHHHHHHhCCCEE--EcCcCcccchhcCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCccchHHHHHHHHHHhC
Confidence 8889999999999853 32 3467888633 12333221111112346788
Q ss_pred CceEEEEcCCcc
Q 046635 83 GFHITGLISNQM 94 (128)
Q Consensus 83 GYrIvgnIGDQw 94 (128)
||.|| .|||..
T Consensus 157 Gy~iI-IiG~~~ 167 (387)
T PRK13371 157 DFTSI-IHGKYK 167 (387)
T ss_pred CCEEE-EEcCCC
Confidence 99999 889864
No 18
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=40.40 E-value=88 Score=28.83 Aligned_cols=78 Identities=8% Similarity=-0.000 Sum_probs=44.5
Q ss_pred HHHHHHhcCccccccchh--hhHHHHHHHHHcCCCc----ccc-cCCceeeecCC-----------------CCCcchhh
Q 046635 15 RATDFLAQGYFNPFVGTK--VLRVTNSNIYVFAYSL----EFV-ENGLHSCRLDN-----------------EMQMDSRE 70 (128)
Q Consensus 15 ~~~~~~~q~~~~~~~~~~--~~~aT~~NL~~aGY~~----~~~-~~~~LiLR~~~-----------------~~~~sa~~ 70 (128)
.|.+.+.+..-..+..+- |+..-++.|++.|-.. +.+ +-+.+|+|.-+ |..|+-+.
T Consensus 21 ~~~~~~~~~~~~i~~lg~ivHN~~vv~~l~~~Gv~~v~~~~~~~~~~~vii~aHG~~~~~~~~~~~~~~~viDaTCP~V~ 100 (647)
T PRK00087 21 TAIKTAEELKGKIYTLGPLIHNNQVVEKLKKKGIKPIEDIDELNEGDTIIIRSHGVPPEVLEELKDKGLKVIDATCPFVK 100 (647)
T ss_pred HHHHHHHhcCCCEEEeCCCcCCHHHHHHHHHCCCEEeCCHhhCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEECCCcCch
Confidence 344444443333444444 8889999999999764 111 14578888743 22333221
Q ss_pred hhHHHHHHHHHcCceEEEEcCCc
Q 046635 71 YLSRRRAILQKEGFHITGLISNQ 93 (128)
Q Consensus 71 YKS~~R~~Le~~GYrIvgnIGDQ 93 (128)
-=-..=+++.++||.|+ .|||-
T Consensus 101 k~~~~~~~~~~~g~~iv-i~G~~ 122 (647)
T PRK00087 101 NIQKLAKKYYEEGYQIV-IVGDK 122 (647)
T ss_pred HHHHHHHHHHhCCCEEE-EEeCC
Confidence 11111234567899999 78875
No 19
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=39.16 E-value=39 Score=23.75 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=14.4
Q ss_pred hHHHHHHHHHcCceEEEEcC
Q 046635 72 LSRRRAILQKEGFHITGLIS 91 (128)
Q Consensus 72 KS~~R~~Le~~GYrIvgnIG 91 (128)
-|..++.|+++||.++ .++
T Consensus 10 Ls~v~~~L~~~GyeVv-~l~ 28 (80)
T PF03698_consen 10 LSNVKEALREKGYEVV-DLE 28 (80)
T ss_pred chHHHHHHHHCCCEEE-ecC
Confidence 4667788888899888 454
No 20
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=36.46 E-value=1.1e+02 Score=22.84 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=20.2
Q ss_pred EEcCCcc-ccccCC-CCcceeeecCCccc
Q 046635 88 GLISNQM-DALIGQ-SLGKRVFKIPNPLY 114 (128)
Q Consensus 88 gnIGDQw-SDL~G~-~~g~RtFKLPNPmY 114 (128)
--|||.+ +|+.+. .+|.++.-++.+.+
T Consensus 171 ~~igDs~~~di~~A~~aG~~~i~~~~~~~ 199 (221)
T TIGR02253 171 VMVGDRLDKDIKGAKNLGMKTVWINQGKS 199 (221)
T ss_pred EEECCChHHHHHHHHHCCCEEEEECCCCC
Confidence 4899999 899885 46777777776544
No 21
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=33.40 E-value=94 Score=19.82 Aligned_cols=43 Identities=7% Similarity=0.005 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEEEEcCCc
Q 046635 36 VTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQ 93 (128)
Q Consensus 36 aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIvgnIGDQ 93 (128)
...++|++.||.. .+.++.. . -..+.+.-++.|+.++..||+.
T Consensus 19 ~~~~~Lr~~g~~v------~~d~~~~--~-------~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 19 EVAKKLSDAGIRV------EVDLRNE--K-------LGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred HHHHHHHHCCCEE------EEECCCC--C-------HHHHHHHHHHcCCCEEEEECcc
Confidence 4678999999986 1222321 1 1222333478899999999965
No 22
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=33.27 E-value=32 Score=28.99 Aligned_cols=45 Identities=31% Similarity=0.355 Sum_probs=27.9
Q ss_pred hHHHHHHHHHcCceEEEEcCC------ccccccCCCCcceeeecCCccccccchhh
Q 046635 72 LSRRRAILQKEGFHITGLISN------QMDALIGQSLGKRVFKIPNPLYYSFDHQI 121 (128)
Q Consensus 72 KS~~R~~Le~~GYrIvgnIGD------QwSDL~G~~~g~RtFKLPNPmYyi~e~~~ 121 (128)
-+..++.|+++||+|+|+-+- .-+.|.|+-.- +=.-||.|..|+|
T Consensus 8 ~~~~~~~~~~~~y~~~~~h~~vk~c~w~~~~~~~~~~c-----yk~~fygi~s~~c 58 (322)
T PRK13762 8 PSEIAKILRKQGYHIVGRHSAVKLCHWTKKALKGGRSC-----YKSKFYGIESHRC 58 (322)
T ss_pred CHHHHHHHHhCCCEEeccccceeechhhHHHhcCCCcc-----cccccccccchhe
Confidence 345688999999999986332 11345553222 2345777777766
No 23
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=33.11 E-value=61 Score=26.72 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHcCceEE
Q 046635 70 EYLSRRRAILQKEGFHIT 87 (128)
Q Consensus 70 ~YKS~~R~~Le~~GYrIv 87 (128)
...+.....|+.+||+|+
T Consensus 37 ~l~~~i~~~L~~kGY~vv 54 (215)
T PF05818_consen 37 NLESQIISALQAKGYQVV 54 (215)
T ss_pred chHHHHHHHHHHCCCEEe
Confidence 689999999999999998
No 24
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=31.88 E-value=1.4e+02 Score=20.46 Aligned_cols=85 Identities=9% Similarity=-0.049 Sum_probs=45.3
Q ss_pred hhHHHHHHHh-cCccccccchhhhHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEEEEc
Q 046635 12 DLRRATDFLA-QGYFNPFVGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITGLI 90 (128)
Q Consensus 12 ~~r~~~~~~~-q~~~~~~~~~~~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIvgnI 90 (128)
+++.+...|. +|+-.-+++..-.+.....|...|.... .+.++...+....++....-...-+++.-..-+|+ -|
T Consensus 81 ~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~---f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~-~v 156 (176)
T PF13419_consen 81 GVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDY---FDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEIL-FV 156 (176)
T ss_dssp THHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGG---CSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEE-EE
T ss_pred hhhhhhhhcccccceeEEeecCCcccccccccccccccc---cccccccchhhhhhhHHHHHHHHHHHcCCCcceEE-EE
Confidence 3455666666 4444444555555567778888887641 34555444333333322222222223322233454 89
Q ss_pred CCccccccCC
Q 046635 91 SNQMDALIGQ 100 (128)
Q Consensus 91 GDQwSDL~G~ 100 (128)
||..+|+.+.
T Consensus 157 gD~~~d~~~A 166 (176)
T PF13419_consen 157 GDSPSDVEAA 166 (176)
T ss_dssp ESSHHHHHHH
T ss_pred eCCHHHHHHH
Confidence 9999998764
No 25
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=30.91 E-value=1.4e+02 Score=19.09 Aligned_cols=42 Identities=5% Similarity=0.016 Sum_probs=25.8
Q ss_pred HHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEEEEcCCc
Q 046635 37 TNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQ 93 (128)
Q Consensus 37 T~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIvgnIGDQ 93 (128)
-...|++.|+... +..++ . . ...+.+..++.||..+..||++
T Consensus 23 ~~~~Lr~~g~~v~------~~~~~-~-~-------~~k~~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 23 LLNALLANGIRVL------YDDRE-R-K-------IGKKFREADLRGVPFAVVVGED 64 (94)
T ss_pred HHHHHHHCCCEEE------ecCCC-c-C-------HhHHHHHHHhCCCCEEEEECCC
Confidence 4567999999861 11111 0 0 2223344478899999999985
No 26
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=29.77 E-value=1.5e+02 Score=21.94 Aligned_cols=56 Identities=7% Similarity=0.049 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHcCCCcccccCCceeeecCCCC-CcchhhhhHHHHHHHHHcCceEEEEcCC
Q 046635 32 KVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEM-QMDSREYLSRRRAILQKEGFHITGLISN 92 (128)
Q Consensus 32 ~~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~-~~sa~~YKS~~R~~Le~~GYrIvgnIGD 92 (128)
.+-.+..+.|+++||+. -.-+|-..... .+........+.+.|.+.|.+|+-+.=+
T Consensus 4 ~it~~~~~~l~~aGy~~-----VgrYl~~~~~~~~~~~k~Lt~~e~~~i~~~Gl~i~pIyq~ 60 (136)
T PF08924_consen 4 QITSASAQALKAAGYRA-----VGRYLSGSRGGCAMRQKNLTAGEVQDIRAAGLRIFPIYQG 60 (136)
T ss_dssp ---HHHHHHHHHT---S-----EEEESS-BTTTB-----B--HHHHHHHHHTT-EEEEEE--
T ss_pred ccCHHHHHHHHHCCCCE-----EEEEcCCCCCCcccccCCCCHHHHHHHHHCCCEEEEEEec
Confidence 34567899999999997 33344322211 1123566778888999999999987544
No 27
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=29.68 E-value=1.3e+02 Score=19.54 Aligned_cols=44 Identities=7% Similarity=-0.093 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEEEEcCCcc
Q 046635 36 VTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQM 94 (128)
Q Consensus 36 aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIvgnIGDQw 94 (128)
.....|++.||... +..+... .+..- +.-.+.|+.++..||++.
T Consensus 22 ~la~~Lr~~g~~v~------~d~~~~~--------l~k~i-~~a~~~g~~~~iiiG~~e 65 (94)
T cd00861 22 KLYAELQAAGVDVL------LDDRNER--------PGVKF-ADADLIGIPYRIVVGKKS 65 (94)
T ss_pred HHHHHHHHCCCEEE------EECCCCC--------cccch-hHHHhcCCCEEEEECCch
Confidence 45678999999971 2222111 11111 233678999999999873
No 28
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=29.52 E-value=32 Score=26.87 Aligned_cols=58 Identities=10% Similarity=-0.030 Sum_probs=32.7
Q ss_pred cchhhhHHHHHHHHHcCCCcccccCCceeeec-CCCCCcchhhhhHHHHHHH-HHcCceE
Q 046635 29 VGTKVLRVTNSNIYVFAYSLEFVENGLHSCRL-DNEMQMDSREYLSRRRAIL-QKEGFHI 86 (128)
Q Consensus 29 ~~~~~~~aT~~NL~~aGY~~~~~~~~~LiLR~-~~~~~~sa~~YKS~~R~~L-e~~GYrI 86 (128)
++-.+-..+.+||.+.|.+...-.|.++++-. -+....|+.+....-++.. |++=|||
T Consensus 113 vPP~~f~~i~~~L~~~~l~~~~~g~~RiVvEKPFG~Dl~SA~~Ln~~l~~~f~E~qIyRI 172 (183)
T PF00479_consen 113 VPPSLFGPIARNLSEAGLNEEPNGWSRIVVEKPFGRDLESARELNDQLAEYFDEEQIYRI 172 (183)
T ss_dssp S-GGGHHHHHHHHHHHT-S-TSSS-EEEEESSTSTSSHHHHHHHHHHHCTTS-GGGEEE-
T ss_pred cCHHHHHHHHHHHHHHhcccccCCceEEEEeCCCCCCHHHHHHHHHHHHHhCCHHHeeeh
Confidence 45567888999999999995333489999954 4444445554444433333 2344444
No 29
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.19 E-value=42 Score=25.95 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=42.4
Q ss_pred hhhHHHHHHHhcCccccccchhhhHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCc--eEEE
Q 046635 11 MDLRRATDFLAQGYFNPFVGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGF--HITG 88 (128)
Q Consensus 11 ~~~r~~~~~~~q~~~~~~~~~~~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GY--rIvg 88 (128)
||.|+..+.| -|.++..-.-..++++.||.. -+.-||+.+. ....=....++..+..|- +-|=
T Consensus 1 M~i~~I~d~l-------sVsgQi~~~D~~~iaa~GFks------iI~nRPDgEe--~~QP~~~~i~~aa~~aGl~y~~iP 65 (130)
T COG3453 1 MDIRRINDRL-------SVSGQISPADIASIAALGFKS------IICNRPDGEE--PGQPGFAAIAAAAEAAGLTYTHIP 65 (130)
T ss_pred CCceecccce-------eecCCCCHHHHHHHHHhccce------ecccCCCCCC--CCCCChHHHHHHHHhcCCceEEee
Confidence 4555555544 256667778889999999984 4555877654 233335566677777774 4444
Q ss_pred EcCCc
Q 046635 89 LISNQ 93 (128)
Q Consensus 89 nIGDQ 93 (128)
.+|.+
T Consensus 66 V~~~~ 70 (130)
T COG3453 66 VTGGG 70 (130)
T ss_pred cCCCC
Confidence 55544
No 30
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=27.45 E-value=1e+02 Score=23.74 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=35.7
Q ss_pred cccchhhhHHHHHHHHHcCCCc---ccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEE
Q 046635 27 PFVGTKVLRVTNSNIYVFAYSL---EFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHIT 87 (128)
Q Consensus 27 ~~~~~~~~~aT~~NL~~aGY~~---~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIv 87 (128)
||=.+.++..--+-|...|-+. .--|-++++.|..+ -...+++|++.||.+.
T Consensus 73 ~FgltGilasV~~pLsd~gigIFavStydtDhiLVr~~d---------LekAv~~L~eaGhev~ 127 (128)
T COG3603 73 DFGLTGILASVSQPLSDNGIGIFAVSTYDTDHILVREED---------LEKAVKALEEAGHEVL 127 (128)
T ss_pred cCCcchhhhhhhhhHhhCCccEEEEEeccCceEEEehhh---------HHHHHHHHHHcCCccc
Confidence 5556666666667788887554 11245888888765 4566789999999873
No 31
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=27.13 E-value=2e+02 Score=21.32 Aligned_cols=78 Identities=9% Similarity=0.024 Sum_probs=39.0
Q ss_pred HHHHHHHhcCcccccc-chhhhHHHHHHHHHcCCCcccccCCceeeecCCCCCcchh-hhhHHHHHHHHHcCc---eEEE
Q 046635 14 RRATDFLAQGYFNPFV-GTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSR-EYLSRRRAILQKEGF---HITG 88 (128)
Q Consensus 14 r~~~~~~~q~~~~~~~-~~~~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~-~YKS~~R~~Le~~GY---rIvg 88 (128)
+.+...|.+.++...+ +++-......-|...|.... .+..+-...... ++.. .|.. .+++.|. .++
T Consensus 112 ~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~---f~~~~~~~~~~~-KP~p~~~~~----~~~~~~~~~~~~i- 182 (197)
T TIGR01548 112 KGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEIL---FPVQIWMEDCPP-KPNPEPLIL----AAKALGVEACHAA- 182 (197)
T ss_pred HHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhh---CCEEEeecCCCC-CcCHHHHHH----HHHHhCcCcccEE-
Confidence 4445555544444444 44455567777888887651 122222222112 2222 2222 2233333 334
Q ss_pred EcCCccccccCC
Q 046635 89 LISNQMDALIGQ 100 (128)
Q Consensus 89 nIGDQwSDL~G~ 100 (128)
-|||.++|+.+.
T Consensus 183 ~vGD~~~Di~aA 194 (197)
T TIGR01548 183 MVGDTVDDIITG 194 (197)
T ss_pred EEeCCHHHHHHH
Confidence 799999998764
No 32
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=26.33 E-value=2.6e+02 Score=21.03 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=26.2
Q ss_pred HHHHHHcCce--EEEEcCCccccccCC-CCcceeeecCCc
Q 046635 76 RAILQKEGFH--ITGLISNQMDALIGQ-SLGKRVFKIPNP 112 (128)
Q Consensus 76 R~~Le~~GYr--IvgnIGDQwSDL~G~-~~g~RtFKLPNP 112 (128)
+..++..|.. =+..|||..+|+... .+|.+++-+|+|
T Consensus 155 ~~~~~~~~~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~ 194 (222)
T PRK10826 155 LNCAAKLGVDPLTCVALEDSFNGMIAAKAARMRSIVVPAP 194 (222)
T ss_pred HHHHHHcCCCHHHeEEEcCChhhHHHHHHcCCEEEEecCC
Confidence 4445555542 245899999999875 678788888776
No 33
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=24.93 E-value=86 Score=24.63 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCCcccccCCceeeec-CCCCCcchhhhhHHHHHHHHHcCceEE
Q 046635 36 VTNSNIYVFAYSLEFVENGLHSCRL-DNEMQMDSREYLSRRRAILQKEGFHIT 87 (128)
Q Consensus 36 aT~~NL~~aGY~~~~~~~~~LiLR~-~~~~~~sa~~YKS~~R~~Le~~GYrIv 87 (128)
.+..=|=+.|... -..++--+ +.+...++..|=.+..+.+.+.||+|.
T Consensus 44 i~DAlLGA~glgD----IG~~Fpd~d~~~k~~~S~~lL~~~~~~~~~~g~~i~ 92 (157)
T PF02542_consen 44 IIDALLGAAGLGD----IGTHFPDTDPKYKGADSRILLKEVVELLREKGYRIV 92 (157)
T ss_dssp HHHHHHHHTTS-T----HHHHSTTTSGGGTTCSHHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHhccCCc----ccccCCCCChhhCCCCHHHHHHHHHHHHHHcCcEEE
Confidence 3444455556543 23333211 224567888999999999999999987
No 34
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.73 E-value=59 Score=19.45 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=13.2
Q ss_pred hHHHHHHHHHcCceEE
Q 046635 72 LSRRRAILQKEGFHIT 87 (128)
Q Consensus 72 KS~~R~~Le~~GYrIv 87 (128)
....++.|++.||+++
T Consensus 50 ~~~~~~~L~~~G~~v~ 65 (65)
T cd04882 50 IEKAIEVLQERGVELV 65 (65)
T ss_pred HHHHHHHHHHCCceEC
Confidence 5578889999999875
No 35
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=24.57 E-value=2.1e+02 Score=21.08 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=16.9
Q ss_pred EEEcCCccccccCC-CCcceeeecC
Q 046635 87 TGLISNQMDALIGQ-SLGKRVFKIP 110 (128)
Q Consensus 87 vgnIGDQwSDL~G~-~~g~RtFKLP 110 (128)
+.-|||.++|+.|. .+|.++.-+.
T Consensus 168 ~~~vgD~~~Di~~A~~~G~~~i~v~ 192 (198)
T TIGR01428 168 VLFVASNPWDLGGAKKFGFKTAWVN 192 (198)
T ss_pred EEEEeCCHHHHHHHHHCCCcEEEec
Confidence 34799999999886 5565555443
No 36
>PLN02862 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Probab=22.66 E-value=99 Score=25.67 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCCcccccCCceeee-cCCCCCcchhhhhHHHHHHHHHcCceEEEEc
Q 046635 36 VTNSNIYVFAYSLEFVENGLHSCR-LDNEMQMDSREYLSRRRAILQKEGFHITGLI 90 (128)
Q Consensus 36 aT~~NL~~aGY~~~~~~~~~LiLR-~~~~~~~sa~~YKS~~R~~Le~~GYrIvgnI 90 (128)
.+..=|=++|-.. -..++-- ++.+...+...+-.+..+.+.+.||+|. ||
T Consensus 103 i~DALLGA~glGD----IG~~FPdtd~~~Kg~~S~~lL~~a~~ll~~~G~~I~-Nv 153 (216)
T PLN02862 103 VVDAILGALGLPD----IGQIFPDTDPKWKGADSSVFIKEAVRLMHEAGYEIG-NL 153 (216)
T ss_pred HHHHHHHHccCCc----ccccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEE-EE
Confidence 4555566677654 4444422 1234677888999999999999999987 54
No 37
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=22.53 E-value=79 Score=19.36 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=18.1
Q ss_pred HHHHHHHHcCceEEEEcCCccccc
Q 046635 74 RRRAILQKEGFHITGLISNQMDAL 97 (128)
Q Consensus 74 ~~R~~Le~~GYrIvgnIGDQwSDL 97 (128)
-++..|+..||+||-.==-+|..|
T Consensus 22 lk~r~L~~~G~~Vi~Ip~~eW~~l 45 (58)
T PF08373_consen 22 LKHRHLKALGYKVISIPYYEWNKL 45 (58)
T ss_pred HHHHHHHHCCCEEEEecHHHHHhc
Confidence 345678999999997766667666
No 38
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=21.15 E-value=2.1e+02 Score=21.32 Aligned_cols=84 Identities=7% Similarity=0.010 Sum_probs=46.0
Q ss_pred hcCccccccchhhhHHHHHHHHHcCCC--cccccCCceeeecCCCCCcch-hhhhHHHHHHHHHcCce---EEEEcCCcc
Q 046635 21 AQGYFNPFVGTKVLRVTNSNIYVFAYS--LEFVENGLHSCRLDNEMQMDS-REYLSRRRAILQKEGFH---ITGLISNQM 94 (128)
Q Consensus 21 ~q~~~~~~~~~~~~~aT~~NL~~aGY~--~~~~~~~~LiLR~~~~~~~sa-~~YKS~~R~~Le~~GYr---IvgnIGDQw 94 (128)
.||.---+++....+.....|...|.. . + ++.++...+....++. ..| ...+++.|.. =+.-|||.+
T Consensus 101 ~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~-~--f~~i~~~~~~~~~KP~p~~~----~~a~~~~~~~~~~~~~~igD~~ 173 (220)
T TIGR03351 101 SSGIKVALTTGFDRDTAERLLEKLGWTVGD-D--VDAVVCPSDVAAGRPAPDLI----LRAMELTGVQDVQSVAVAGDTP 173 (220)
T ss_pred HCCCEEEEEeCCchHHHHHHHHHhhhhhhc-c--CCEEEcCCcCCCCCCCHHHH----HHHHHHcCCCChhHeEEeCCCH
Confidence 566555556666666677777777764 2 1 2334433322222222 222 2334444542 245899999
Q ss_pred ccccCC-CCccee-eecCC
Q 046635 95 DALIGQ-SLGKRV-FKIPN 111 (128)
Q Consensus 95 SDL~G~-~~g~Rt-FKLPN 111 (128)
+|+.+. .+|.++ +-++.
T Consensus 174 ~Di~aa~~aG~~~~i~~~~ 192 (220)
T TIGR03351 174 NDLEAGINAGAGAVVGVLT 192 (220)
T ss_pred HHHHHHHHCCCCeEEEEec
Confidence 999886 567666 55544
No 39
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=20.76 E-value=2e+02 Score=21.18 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=14.8
Q ss_pred HHHHHcCceE--EEEcCCcc-ccccCC
Q 046635 77 AILQKEGFHI--TGLISNQM-DALIGQ 100 (128)
Q Consensus 77 ~~Le~~GYrI--vgnIGDQw-SDL~G~ 100 (128)
..+++.|... +.-|||.+ +|+.+.
T Consensus 168 ~~~~~~~~~~~~~~~IgD~~~~Di~~A 194 (203)
T TIGR02252 168 EALERAGISPEEALHIGDSLRNDYQGA 194 (203)
T ss_pred HHHHHcCCChhHEEEECCCchHHHHHH
Confidence 3344445422 34799997 799775
No 40
>COG2852 Very-short-patch-repair endonuclease [Replication, recombination, and repair]
Probab=20.76 E-value=1.5e+02 Score=22.90 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=30.3
Q ss_pred CCceeeecCCCCCcchhhhhHHHHHHHHHcCceEEEE
Q 046635 53 NGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITGL 89 (128)
Q Consensus 53 ~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIvgn 89 (128)
-.+||+--++.......+|-+.+=+.|++.||+|+=.
T Consensus 64 ~~klIvElDG~qH~~~~~~Da~Rd~~L~~~G~~VLRf 100 (129)
T COG2852 64 DAKLIVELDGGQHEEREEYDAERDAFLESQGFTVLRF 100 (129)
T ss_pred CccEEEEecCccchhhhhhhHHHHHHHHhCCceEEEe
Confidence 3678888777777678899999999999999999843
No 41
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=20.46 E-value=1.4e+02 Score=26.69 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=38.5
Q ss_pred hhHHHHHH---HHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEEEEcCC
Q 046635 33 VLRVTNSN---IYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITGLISN 92 (128)
Q Consensus 33 ~~~aT~~N---L~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIvgnIGD 92 (128)
|+|+|-+| |..-|-|- -+++|.++ ...+...||+..+.+|.++--.|.-.++|
T Consensus 212 VREiTFeN~EELtEEGlPf------lILf~~kd-D~~s~k~F~~aI~ReL~~e~~~in~l~AD 267 (375)
T KOG0912|consen 212 VREITFENAEELTEEGLPF------LILFRKKD-DKESEKIFKNAIARELDDETLAINFLTAD 267 (375)
T ss_pred hhhhhhccHHHHhhcCCce------EEEEecCC-cccHHHHHHHHHHHHhhhhhhccceeecC
Confidence 78888777 67788883 34456655 46788999999999998876666554444
Done!