Query 046635
Match_columns 128
No_of_seqs 110 out of 198
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 04:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046635.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046635hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ocu_A Lipoprotein E; hydrolas 99.8 5.5E-20 1.9E-24 148.9 8.4 100 13-123 106-230 (262)
2 3pct_A Class C acid phosphatas 99.8 2.2E-19 7.6E-24 145.2 8.3 100 13-123 106-230 (260)
3 2i33_A Acid phosphatase; HAD s 99.3 5E-12 1.7E-16 99.8 7.5 100 13-121 106-226 (258)
4 1ltq_A Polynucleotide kinase; 62.0 10 0.00036 28.4 4.5 88 14-107 194-294 (301)
5 3e58_A Putative beta-phosphogl 39.5 47 0.0016 22.0 4.5 95 13-113 94-192 (214)
6 2zg6_A Putative uncharacterize 36.4 1.1E+02 0.0036 21.3 7.1 91 14-111 101-193 (220)
7 2pib_A Phosphorylated carbohyd 35.8 58 0.002 21.6 4.5 93 14-112 90-188 (216)
8 3ib6_A Uncharacterized protein 34.2 69 0.0023 22.2 4.8 94 13-114 39-146 (189)
9 3szu_A ISPH, 4-hydroxy-3-methy 30.4 77 0.0026 26.3 5.2 75 15-93 33-134 (328)
10 3m9l_A Hydrolase, haloacid deh 30.3 59 0.002 22.1 3.9 96 13-113 75-174 (205)
11 3dnf_A ISPH, LYTB, 4-hydroxy-3 30.3 92 0.0031 25.5 5.6 73 15-93 22-122 (297)
12 1iv3_A 2-C-methyl-D-erythritol 27.7 58 0.002 24.5 3.7 28 62-90 67-94 (152)
13 1jg5_A GTP cyclohydrolase I fe 27.2 29 0.001 23.9 1.8 18 76-93 56-73 (83)
14 3qnm_A Haloacid dehalogenase-l 26.2 90 0.0031 21.2 4.2 88 14-107 113-204 (240)
15 3kzx_A HAD-superfamily hydrola 26.0 1.6E+02 0.0053 20.1 5.5 92 13-111 108-205 (231)
16 2pmp_A 2-C-methyl-D-erythritol 25.7 64 0.0022 24.4 3.6 50 36-90 47-97 (160)
17 3mc1_A Predicted phosphatase, 25.7 1.1E+02 0.0038 20.7 4.6 91 14-110 92-186 (226)
18 3n2f_G Na+/K+ ATPase gamma sub 23.7 20 0.00068 20.5 0.3 9 111-119 1-9 (31)
19 3re3_A 2-C-methyl-D-erythritol 23.2 73 0.0025 24.2 3.5 50 36-90 50-100 (162)
20 1gx1_A 2-C-methyl-D-erythritol 22.7 68 0.0023 24.3 3.2 27 63-90 69-95 (160)
21 1t0a_A 2C-methyl-D-erythritol 22.4 65 0.0022 24.4 3.1 27 63-90 70-96 (159)
22 3f0d_A 2-C-methyl-D-erythritol 21.8 78 0.0027 24.5 3.5 50 36-90 67-117 (183)
23 2uzh_A 2C-methyl-D-erythritol 21.4 70 0.0024 24.4 3.1 27 63-90 73-99 (165)
24 2hfq_A Hypothetical protein; A 21.1 99 0.0034 22.2 3.6 56 25-87 42-101 (109)
25 3um9_A Haloacid dehalogenase, 20.8 1.3E+02 0.0045 20.3 4.2 93 14-112 102-198 (230)
26 3b6n_A 2-C-methyl-D-erythritol 20.2 76 0.0026 24.7 3.1 50 36-90 72-122 (187)
27 2nyv_A Pgpase, PGP, phosphogly 20.2 1.5E+02 0.0052 20.6 4.5 89 14-110 89-183 (222)
No 1
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=99.81 E-value=5.5e-20 Score=148.93 Aligned_cols=100 Identities=14% Similarity=0.202 Sum_probs=82.7
Q ss_pred hHHHHHHHhcCccccccc-hh----hhHHHHHHHHHcCCCcccccCC--ceeeecCCCCCcchhhhhHHHHHHHHHcCce
Q 046635 13 LRRATDFLAQGYFNPFVG-TK----VLRVTNSNIYVFAYSLEFVENG--LHSCRLDNEMQMDSREYLSRRRAILQKEGFH 85 (128)
Q Consensus 13 ~r~~~~~~~q~~~~~~~~-~~----~~~aT~~NL~~aGY~~~~~~~~--~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYr 85 (128)
...+...|.+.++.+++. ++ ..++|.+||++.|++. |+ +|+||+.. .+|+.+|++|+++||+
T Consensus 106 ~~ell~~L~~~G~ki~ivTgR~~~~~r~~T~~~L~~lGi~~----~~~~~Lilr~~~-------~~K~~~r~~l~~~Gy~ 174 (262)
T 3ocu_A 106 AVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMKRLGFNG----VEESAFYLKKDK-------SAKAARFAEIEKQGYE 174 (262)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEETTTTHHHHHHHHHHHTCSC----CSGGGEEEESSC-------SCCHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHCCCeEEEEeCCCccchHHHHHHHHHHcCcCc----ccccceeccCCC-------CChHHHHHHHHhcCCC
Confidence 345566666555555554 45 3469999999999998 88 99999753 5799999999999999
Q ss_pred EEEEcCCccccccCCC------------------CcceeeecCCccccccchhhhh
Q 046635 86 ITGLISNQMDALIGQS------------------LGKRVFKIPNPLYYSFDHQIES 123 (128)
Q Consensus 86 IvgnIGDQwSDL~G~~------------------~g~RtFKLPNPmYyi~e~~~~~ 123 (128)
||++|||||+||.|++ .|.+.|.||||||+.||.-.-+
T Consensus 175 iv~~vGD~~~Dl~~~~~~~~~~~r~a~v~~~~~~fG~~~ivlPNp~YG~we~~~~~ 230 (262)
T 3ocu_A 175 IVLYVGDNLDDFGNTVYGKLNADRRAFVDQNQGKFGKTFIMLPNANYGGWEGGLAE 230 (262)
T ss_dssp EEEEEESSGGGGCSTTTTCCHHHHHHHHHHTGGGBTTTEEECCCSSCSHHHHTTST
T ss_pred EEEEECCChHHhccccccCCHHHHHHHHHHHHHHhCCCEEEeCCCCccchhHHhcC
Confidence 9999999999999976 7889999999999999976543
No 2
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=99.78 E-value=2.2e-19 Score=145.24 Aligned_cols=100 Identities=12% Similarity=0.211 Sum_probs=81.7
Q ss_pred hHHHHHHHhcCcccccc-chh----hhHHHHHHHHHcCCCcccccCC--ceeeecCCCCCcchhhhhHHHHHHHHHcCce
Q 046635 13 LRRATDFLAQGYFNPFV-GTK----VLRVTNSNIYVFAYSLEFVENG--LHSCRLDNEMQMDSREYLSRRRAILQKEGFH 85 (128)
Q Consensus 13 ~r~~~~~~~q~~~~~~~-~~~----~~~aT~~NL~~aGY~~~~~~~~--~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYr 85 (128)
...+...|.+.++.+++ +++ ..+.|.+||++.|++. |+ +|+||+.. .+|+.+|++|+++||+
T Consensus 106 ~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~~~L~~lGi~~----~~~~~Lilr~~~-------~~K~~~r~~L~~~gy~ 174 (260)
T 3pct_A 106 AVEFSNYVNANGGTMFFVSNRRDDVEKAGTVDDMKRLGFTG----VNDKTLLLKKDK-------SNKSVRFKQVEDMGYD 174 (260)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHHHTCCC----CSTTTEEEESSC-------SSSHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCcCc----cccceeEecCCC-------CChHHHHHHHHhcCCC
Confidence 34556666655555554 445 2469999999999998 77 79999742 5799999999999999
Q ss_pred EEEEcCCccccccCCC------------------CcceeeecCCccccccchhhhh
Q 046635 86 ITGLISNQMDALIGQS------------------LGKRVFKIPNPLYYSFDHQIES 123 (128)
Q Consensus 86 IvgnIGDQwSDL~G~~------------------~g~RtFKLPNPmYyi~e~~~~~ 123 (128)
|+++|||||+||.++. .|.+.|.||||||+.||.-.-+
T Consensus 175 iv~~iGD~~~Dl~~~~~~~~~~~r~a~v~~~~~~fG~~~ivlPNp~YG~we~~~~~ 230 (260)
T 3pct_A 175 IVLFVGDNLNDFGDATYKKSNAERRDFVAKNSKAFGKKFIVLPNTQYGDWEGGLDK 230 (260)
T ss_dssp EEEEEESSGGGGCGGGTTCCHHHHHHHHHHTGGGBTTTEEECCCCSCSHHHHTTCT
T ss_pred EEEEECCChHHcCcccccCCHHHHHHHHHHHHHHhCCCEEEeCCCCcchhhHHhcC
Confidence 9999999999999965 7889999999999999976533
No 3
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=99.29 E-value=5e-12 Score=99.81 Aligned_cols=100 Identities=13% Similarity=0.186 Sum_probs=77.6
Q ss_pred hHHHHHHHhcCcccccc-chhh---hHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEEE
Q 046635 13 LRRATDFLAQGYFNPFV-GTKV---LRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITG 88 (128)
Q Consensus 13 ~r~~~~~~~q~~~~~~~-~~~~---~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIvg 88 (128)
.+.+...|.+-++..++ +++- .+.+.++|...|++. +++..++++++.. +|...|..+++.|+.|+.
T Consensus 106 ~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~~~L~~~Gl~~--v~~~~vi~~~~~~-------~K~~~~~~~~~~~~~~~l 176 (258)
T 2i33_A 106 SIDFLKYTESKGVDIYYISNRKTNQLDATIKNLERVGAPQ--ATKEHILLQDPKE-------KGKEKRRELVSQTHDIVL 176 (258)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEGGGHHHHHHHHHHHTCSS--CSTTTEEEECTTC-------CSSHHHHHHHHHHEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHHHHcCCCc--CCCceEEECCCCC-------CCcHHHHHHHHhCCCceE
Confidence 34566666555555544 4443 568999999999982 3388999986642 566667778888999999
Q ss_pred EcCCccccccCCC-----------------CcceeeecCCccccccchhh
Q 046635 89 LISNQMDALIGQS-----------------LGKRVFKIPNPLYYSFDHQI 121 (128)
Q Consensus 89 nIGDQwSDL~G~~-----------------~g~RtFKLPNPmYyi~e~~~ 121 (128)
.|||+++|+.+.. +|.++|+||||||..||.=.
T Consensus 177 ~VGDs~~Di~aA~~~~~~~r~a~v~~~~~~aG~~~i~lpn~~y~~w~~~~ 226 (258)
T 2i33_A 177 FFGDNLSDFTGFDGKSVKDRNQAVTDSKAQFGEKFIIFPNPMYGDWEGAL 226 (258)
T ss_dssp EEESSGGGSTTCSSCCHHHHHHHHHHTGGGBTTTEEECCCCSSSHHHHHH
T ss_pred EeCCCHHHhcccccCCHHHHHHHHHHHHHHhcCceEECCCCCcchhhhhh
Confidence 9999999999984 68899999999999998644
No 4
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=61.97 E-value=10 Score=28.43 Aligned_cols=88 Identities=8% Similarity=-0.008 Sum_probs=56.3
Q ss_pred HHHHHHH-hcCccccccchhh---hHHHHHHHHH--------cCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHH
Q 046635 14 RRATDFL-AQGYFNPFVGTKV---LRVTNSNIYV--------FAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQK 81 (128)
Q Consensus 14 r~~~~~~-~q~~~~~~~~~~~---~~aT~~NL~~--------aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~ 81 (128)
+.+.+.| .+|.-.-+++++- .+.|.+.|.. .|.+ ++.++.++... .++.-+.+....+++..
T Consensus 194 ~e~L~~L~~~g~~~~v~T~k~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~-~kp~p~~~~~~~~~~~~ 267 (301)
T 1ltq_A 194 VELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVP-----LVMQCQREQGD-TRKDDVVKEEIFWKHIA 267 (301)
T ss_dssp HHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHHHHHHHHTTCCC-----CSEEEECCTTC-CSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCeEEEEeCCCcccchhHHHHHHhcccccccccCCC-----chheeeccCCC-CcHHHHHHHHHHHHHhc
Confidence 4444455 4555555666663 3357888888 8884 68888877653 34555566666566655
Q ss_pred cCceEEEEcCCccccccCC-CCcceee
Q 046635 82 EGFHITGLISNQMDALIGQ-SLGKRVF 107 (128)
Q Consensus 82 ~GYrIvgnIGDQwSDL~G~-~~g~RtF 107 (128)
..+.+...|||...|+... .+|.+++
T Consensus 268 ~~~~~~~~vgD~~~di~~a~~aG~~~~ 294 (301)
T 1ltq_A 268 PHFDVKLAIDDRTQVVEMWRRIGVECW 294 (301)
T ss_dssp TTCEEEEEEECCHHHHHHHHHTTCCEE
T ss_pred cccceEEEeCCcHHHHHHHHHcCCeEE
Confidence 5577655699999999764 4454444
No 5
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=39.49 E-value=47 Score=22.00 Aligned_cols=95 Identities=5% Similarity=-0.083 Sum_probs=49.9
Q ss_pred hHHHHHHHhcCcccccc-chhhhHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceE--EEE
Q 046635 13 LRRATDFLAQGYFNPFV-GTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHI--TGL 89 (128)
Q Consensus 13 ~r~~~~~~~q~~~~~~~-~~~~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrI--vgn 89 (128)
.+.+...+.+-++..++ +.........-|...|.... .+.++........++.. ..-+.-++..|... +.-
T Consensus 94 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~---f~~~~~~~~~~~~kp~~---~~~~~~~~~~~~~~~~~~~ 167 (214)
T 3e58_A 94 VLKVLNEVKSQGLEIGLASSSVKADIFRALEENRLQGF---FDIVLSGEEFKESKPNP---EIYLTALKQLNVQASRALI 167 (214)
T ss_dssp HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGG---CSEEEEGGGCSSCTTSS---HHHHHHHHHHTCCGGGEEE
T ss_pred HHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHcCcHhh---eeeEeecccccCCCCCh---HHHHHHHHHcCCChHHeEE
Confidence 34455555444444444 34455567777888887651 23333332222222211 12233444555431 447
Q ss_pred cCCccccccCC-CCcceeeecCCcc
Q 046635 90 ISNQMDALIGQ-SLGKRVFKIPNPL 113 (128)
Q Consensus 90 IGDQwSDL~G~-~~g~RtFKLPNPm 113 (128)
|||..+|+.+. .+|.+++-..++-
T Consensus 168 iGD~~~Di~~a~~aG~~~~~~~~~~ 192 (214)
T 3e58_A 168 IEDSEKGIAAGVAADVEVWAIRDNE 192 (214)
T ss_dssp EECSHHHHHHHHHTTCEEEEECCSS
T ss_pred EeccHhhHHHHHHCCCEEEEECCCC
Confidence 99999999874 5566676666543
No 6
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}
Probab=36.39 E-value=1.1e+02 Score=21.28 Aligned_cols=91 Identities=8% Similarity=-0.045 Sum_probs=45.3
Q ss_pred HHHHHHHhcCccccccchhhhHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEEEEcCCc
Q 046635 14 RRATDFLAQGYFNPFVGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQ 93 (128)
Q Consensus 14 r~~~~~~~q~~~~~~~~~~~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIvgnIGDQ 93 (128)
+.+...|.+-+...++.+.-.+.+...|...|.... .+.++........++.. ..-+..+++.|..- .-|||.
T Consensus 101 ~~~l~~l~~~g~~~~i~Tn~~~~~~~~l~~~gl~~~---f~~~~~~~~~~~~Kp~~---~~~~~~~~~~~~~~-~~vgD~ 173 (220)
T 2zg6_A 101 LEFLEGLKSNGYKLALVSNASPRVKTLLEKFDLKKY---FDALALSYEIKAVKPNP---KIFGFALAKVGYPA-VHVGDI 173 (220)
T ss_dssp HHHHHHHHTTTCEEEECCSCHHHHHHHHHHHTCGGG---CSEEC-----------C---CHHHHHHHHHCSSE-EEEESS
T ss_pred HHHHHHHHHCCCEEEEEeCCcHHHHHHHHhcCcHhH---eeEEEeccccCCCCCCH---HHHHHHHHHcCCCe-EEEcCC
Confidence 444455555444444333322235667777776541 23333322111111111 11234455667766 789999
Q ss_pred cc-cccCC-CCcceeeecCC
Q 046635 94 MD-ALIGQ-SLGKRVFKIPN 111 (128)
Q Consensus 94 wS-DL~G~-~~g~RtFKLPN 111 (128)
.+ |+.+. .+|.+++-++.
T Consensus 174 ~~~Di~~a~~aG~~~i~v~~ 193 (220)
T 2zg6_A 174 YELDYIGAKRSYVDPILLDR 193 (220)
T ss_dssp CCCCCCCSSSCSEEEEEBCT
T ss_pred chHhHHHHHHCCCeEEEECC
Confidence 99 99875 45777777654
No 7
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=35.82 E-value=58 Score=21.57 Aligned_cols=93 Identities=8% Similarity=-0.003 Sum_probs=48.0
Q ss_pred HHHHHHHhcCccc-cccchhhhHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceE--EEEc
Q 046635 14 RRATDFLAQGYFN-PFVGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHI--TGLI 90 (128)
Q Consensus 14 r~~~~~~~q~~~~-~~~~~~~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrI--vgnI 90 (128)
+.+...+.+-++. -+++....+....-|...|.... .+.++........++. ...-+..++..|... +.-|
T Consensus 90 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~---f~~~~~~~~~~~~kp~---~~~~~~~~~~~~~~~~~~i~i 163 (216)
T 2pib_A 90 REALEFVKSKRIKLALATSTPQREALERLRRLDLEKY---FDVMVFGDQVKNGKPD---PEIYLLVLERLNVVPEKVVVF 163 (216)
T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGG---CSEEECGGGSSSCTTS---THHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHCCCCEEEEeCCcHHhHHHHHHhcChHHh---cCEEeecccCCCCCcC---cHHHHHHHHHcCCCCceEEEE
Confidence 3344444433333 34444455567777888887652 2333322211112221 122334445555421 4479
Q ss_pred CCccccccCC-CCcceee--ecCCc
Q 046635 91 SNQMDALIGQ-SLGKRVF--KIPNP 112 (128)
Q Consensus 91 GDQwSDL~G~-~~g~RtF--KLPNP 112 (128)
||..+|+.+. .+|.+++ -+.++
T Consensus 164 GD~~~Di~~a~~aG~~~i~~~v~~~ 188 (216)
T 2pib_A 164 EDSKSGVEAAKSAGIERIYGVVHSL 188 (216)
T ss_dssp ECSHHHHHHHHHTTCCEEEEECCSS
T ss_pred eCcHHHHHHHHHcCCcEEehccCCC
Confidence 9999999874 5566676 55543
No 8
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=34.22 E-value=69 Score=22.20 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=51.9
Q ss_pred hHHHHHHHhcCccccccchh-hh---HHHHHHHHHcCCCcccccCCceeeecCC----CCCcch-hhhhHHHHHHHHHcC
Q 046635 13 LRRATDFLAQGYFNPFVGTK-VL---RVTNSNIYVFAYSLEFVENGLHSCRLDN----EMQMDS-REYLSRRRAILQKEG 83 (128)
Q Consensus 13 ~r~~~~~~~q~~~~~~~~~~-~~---~aT~~NL~~aGY~~~~~~~~~LiLR~~~----~~~~sa-~~YKS~~R~~Le~~G 83 (128)
.+.+...|.+-++..++.|. -. +....-|...|.... .+.++..... ...++. .-|. ..+++.|
T Consensus 39 ~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~---fd~i~~~~~~~~~~~~~KP~p~~~~----~~~~~~~ 111 (189)
T 3ib6_A 39 AKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDY---FDFIYASNSELQPGKMEKPDKTIFD----FTLNALQ 111 (189)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGG---EEEEEECCTTSSTTCCCTTSHHHHH----HHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhh---eEEEEEccccccccCCCCcCHHHHH----HHHHHcC
Confidence 45566666655555555443 22 677788889998752 2333333221 122322 2232 2333334
Q ss_pred c---eEEEEcCCc-cccccCC-CCcceeeecCCccc
Q 046635 84 F---HITGLISNQ-MDALIGQ-SLGKRVFKIPNPLY 114 (128)
Q Consensus 84 Y---rIvgnIGDQ-wSDL~G~-~~g~RtFKLPNPmY 114 (128)
. ++ .-|||. .+|+.+. .+|.+++-++++-.
T Consensus 112 ~~~~~~-l~VGD~~~~Di~~A~~aG~~~i~v~~~~~ 146 (189)
T 3ib6_A 112 IDKTEA-VMVGNTFESDIIGANRAGIHAIWLQNPEV 146 (189)
T ss_dssp CCGGGE-EEEESBTTTTHHHHHHTTCEEEEECCTTT
T ss_pred CCcccE-EEECCCcHHHHHHHHHCCCeEEEECCccc
Confidence 3 34 479999 4999875 45777777766544
No 9
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=30.42 E-value=77 Score=26.34 Aligned_cols=75 Identities=12% Similarity=0.002 Sum_probs=42.4
Q ss_pred HHHHHHhcCccccccchh--hhHHHHHHHHHcCCCc----ccc-cCCceeeecCCCCCcchhhhhHHH------------
Q 046635 15 RATDFLAQGYFNPFVGTK--VLRVTNSNIYVFAYSL----EFV-ENGLHSCRLDNEMQMDSREYLSRR------------ 75 (128)
Q Consensus 15 ~~~~~~~q~~~~~~~~~~--~~~aT~~NL~~aGY~~----~~~-~~~~LiLR~~~~~~~sa~~YKS~~------------ 75 (128)
.+.+++.+.+...++.+. ++..-++.|++.|-.. +.+ +-+.+|+|.-+ .+-..|+..+
T Consensus 33 ~ae~al~~~~~~iy~~g~IVHN~~Vv~~L~~~Gv~~ve~l~ev~~g~~VIirAHG---v~~~v~~~a~~rgl~iiDATCP 109 (328)
T 3szu_A 33 IVENALAIYGAPIYVRHEVVHNRYVVDSLRERGAIFIEQISEVPDGAILIFSAHG---VSQAVRNEAKSRDLTVFDATCP 109 (328)
T ss_dssp HHHHHHHHHCSCEEEESCSSSCHHHHHHHHHTTEEEESSGGGSCTTCEEEECTTC---CCHHHHHHHHHTTCEEEECCCH
T ss_pred HHHHHHHhcCCCEEEeCCCccCHHHHHHHHHCCCEEecchhhCCCCCEEEEECCC---CCHHHHHHHHHCCCEEEECCCc
Confidence 344555554433344444 7788889999999752 111 13467888643 2222222222
Q ss_pred -----H---HHHHHcCceEEEEcCCc
Q 046635 76 -----R---AILQKEGFHITGLISNQ 93 (128)
Q Consensus 76 -----R---~~Le~~GYrIvgnIGDQ 93 (128)
. +++.++||.|+ .|||.
T Consensus 110 ~V~Kvh~~v~~~~~~Gy~ii-iiG~~ 134 (328)
T 3szu_A 110 LVTKVHMEVARASRRGEESI-LIGHA 134 (328)
T ss_dssp HHHHHHHHHHHHHHHTCEEE-EESCT
T ss_pred chHHHHHHHHHHHhCCCEEE-EEccC
Confidence 1 13457899999 88874
No 10
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=30.33 E-value=59 Score=22.14 Aligned_cols=96 Identities=7% Similarity=-0.068 Sum_probs=51.2
Q ss_pred hHHHHHHHhcCcccc-ccchhhhHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceE--EEE
Q 046635 13 LRRATDFLAQGYFNP-FVGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHI--TGL 89 (128)
Q Consensus 13 ~r~~~~~~~q~~~~~-~~~~~~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrI--vgn 89 (128)
.+.+...|.+-++.. +++.........-|...|.... .+.+.++ -......++. ...-+..++..|... +.-
T Consensus 75 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~-f~~~~i~-~~~~~~~kp~---~~~~~~~~~~~g~~~~~~i~ 149 (205)
T 3m9l_A 75 AVELVRELAGRGYRLGILTRNARELAHVTLEAIGLADC-FAEADVL-GRDEAPPKPH---PGGLLKLAEAWDVSPSRMVM 149 (205)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGG-SCGGGEE-CTTTSCCTTS---SHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHhcCCeEEEEeCCchHHHHHHHHHcCchhh-cCcceEE-eCCCCCCCCC---HHHHHHHHHHcCCCHHHEEE
Confidence 445555555544444 4444455677778888887641 1112233 2221112211 123344555556531 447
Q ss_pred cCCccccccCC-CCcceeeecCCcc
Q 046635 90 ISNQMDALIGQ-SLGKRVFKIPNPL 113 (128)
Q Consensus 90 IGDQwSDL~G~-~~g~RtFKLPNPm 113 (128)
|||..+|+.+. .+|.+++-+.|..
T Consensus 150 iGD~~~Di~~a~~aG~~~i~v~~~~ 174 (205)
T 3m9l_A 150 VGDYRFDLDCGRAAGTRTVLVNLPD 174 (205)
T ss_dssp EESSHHHHHHHHHHTCEEEECSSSS
T ss_pred ECCCHHHHHHHHHcCCEEEEEeCCC
Confidence 99999999874 4566677776653
No 11
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=30.30 E-value=92 Score=25.50 Aligned_cols=73 Identities=11% Similarity=0.085 Sum_probs=42.1
Q ss_pred HHHHHHhcCccccccchh--hhHHHHHHHHHcCCCccccc------CCceeeecCCCCCcchhhhhHHHH----------
Q 046635 15 RATDFLAQGYFNPFVGTK--VLRVTNSNIYVFAYSLEFVE------NGLHSCRLDNEMQMDSREYLSRRR---------- 76 (128)
Q Consensus 15 ~~~~~~~q~~~~~~~~~~--~~~aT~~NL~~aGY~~~~~~------~~~LiLR~~~~~~~sa~~YKS~~R---------- 76 (128)
.+.+++.+.+-..++.+. ++..-++.|++.|-. |++ -+.+|+|.-+ .+-..|+..++
T Consensus 22 ~a~~al~~~~~~iy~~g~IVHN~~Vv~~L~~~Gv~--~v~~~ev~~g~~VIirAHG---v~~~v~~~a~~rgl~iiDATC 96 (297)
T 3dnf_A 22 LAEESLKESQGKVYTLGPIIHNPQEVNRLKNLGVF--PSQGEEFKEGDTVIIRSHG---IPPEKEEALRKKGLKVIDATC 96 (297)
T ss_dssp HHHHHTTTCCSCEEESSCSSSCHHHHHHHHHHTEE--ECCSSCCCTTCEEEECTTC---CCHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHhcCCCEEEeCCcccCHHHHHHHHhCCCE--EechhhCCCCCEEEEECCC---CCHHHHHHHHHCCCEEEeCCC
Confidence 445555553333344443 777888999999875 233 2467777643 22222222221
Q ss_pred ----------HHHHHcCceEEEEcCCc
Q 046635 77 ----------AILQKEGFHITGLISNQ 93 (128)
Q Consensus 77 ----------~~Le~~GYrIvgnIGDQ 93 (128)
+++.++||.|+ .|||.
T Consensus 97 P~V~Kvh~~v~~~~~~Gy~ii-iiG~~ 122 (297)
T 3dnf_A 97 PYVKAVHEAVCQLTREGYFVV-LVGEK 122 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCEEE-EESCT
T ss_pred cchHHHHHHHHHHHhCCCEEE-EEecC
Confidence 13457899999 78874
No 12
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=27.70 E-value=58 Score=24.48 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=22.7
Q ss_pred CCCCcchhhhhHHHHHHHHHcCceEEEEc
Q 046635 62 NEMQMDSREYLSRRRAILQKEGFHITGLI 90 (128)
Q Consensus 62 ~~~~~sa~~YKS~~R~~Le~~GYrIvgnI 90 (128)
.+...++..+-.+..+.+.++||+|. |+
T Consensus 67 ~~kga~S~~lL~~~~~~~~~~G~~i~-Nv 94 (152)
T 1iv3_A 67 RWRGERSEVFLREAMRLVEARGAKLL-QA 94 (152)
T ss_dssp TTTTCCHHHHHHHHHHHHHHTTCCEE-EE
T ss_pred hhCCCCHHHHHHHHHHHHHHcCCEEE-EE
Confidence 34566788898999999999999986 54
No 13
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=27.18 E-value=29 Score=23.94 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=15.2
Q ss_pred HHHHHHcCceEEEEcCCc
Q 046635 76 RAILQKEGFHITGLISNQ 93 (128)
Q Consensus 76 R~~Le~~GYrIvgnIGDQ 93 (128)
=.+||+.|||.++--|.-
T Consensus 56 LnKLE~~G~rVvsmtGvg 73 (83)
T 1jg5_A 56 LDKLECRGFRVLSMTGVG 73 (83)
T ss_dssp HHHHHHTTCEEEEEEEET
T ss_pred HHHHhccCeEEEEEecCC
Confidence 368999999999988764
No 14
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=26.20 E-value=90 Score=21.15 Aligned_cols=88 Identities=9% Similarity=-0.001 Sum_probs=43.3
Q ss_pred HHHHHHHhcCccccccchhhhHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCce--EEEEcC
Q 046635 14 RRATDFLAQGYFNPFVGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFH--ITGLIS 91 (128)
Q Consensus 14 r~~~~~~~q~~~~~~~~~~~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYr--IvgnIG 91 (128)
+.+...+.+|+-.-+++.........-|...|.... .+.++........++. ...-+..++..|.. =+.-||
T Consensus 113 ~~~l~~l~~g~~~~i~sn~~~~~~~~~l~~~~l~~~---f~~~~~~~~~~~~kp~---~~~~~~~~~~lgi~~~~~~~iG 186 (240)
T 3qnm_A 113 KEVLEYLAPQYNLYILSNGFRELQSRKMRSAGVDRY---FKKIILSEDLGVLKPR---PEIFHFALSATQSELRESLMIG 186 (240)
T ss_dssp HHHHHHHTTTSEEEEEECSCHHHHHHHHHHHTCGGG---CSEEEEGGGTTCCTTS---HHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHcCCeEEEEeCCchHHHHHHHHHcChHhh---ceeEEEeccCCCCCCC---HHHHHHHHHHcCCCcccEEEEC
Confidence 444555555543334444445566677777777651 2333332221112221 12233445555542 234799
Q ss_pred Ccc-ccccCC-CCcceee
Q 046635 92 NQM-DALIGQ-SLGKRVF 107 (128)
Q Consensus 92 DQw-SDL~G~-~~g~RtF 107 (128)
|.+ +|+.+. .+|.++.
T Consensus 187 D~~~~Di~~a~~aG~~~~ 204 (240)
T 3qnm_A 187 DSWEADITGAHGVGMHQA 204 (240)
T ss_dssp SCTTTTHHHHHHTTCEEE
T ss_pred CCchHhHHHHHHcCCeEE
Confidence 996 999764 3343333
No 15
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=25.97 E-value=1.6e+02 Score=20.12 Aligned_cols=92 Identities=14% Similarity=-0.020 Sum_probs=48.0
Q ss_pred hHHHHHHHhcCcccc-ccchhhhHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCc----eEE
Q 046635 13 LRRATDFLAQGYFNP-FVGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGF----HIT 87 (128)
Q Consensus 13 ~r~~~~~~~q~~~~~-~~~~~~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GY----rIv 87 (128)
.+.+...|.+-++.. +++.........-|...|.... .+.++........++.. ..-+..++..|. .+
T Consensus 108 ~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~---f~~i~~~~~~~~~Kp~~---~~~~~~~~~lgi~~~~~~- 180 (231)
T 3kzx_A 108 AIELLDTLKENNITMAIVSNKNGERLRSEIHHKNLTHY---FDSIIGSGDTGTIKPSP---EPVLAALTNINIEPSKEV- 180 (231)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGGG---CSEEEEETSSSCCTTSS---HHHHHHHHHHTCCCSTTE-
T ss_pred HHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHCCchhh---eeeEEcccccCCCCCCh---HHHHHHHHHcCCCcccCE-
Confidence 344445554433433 3444445567777888887642 23333333222222211 222344455555 34
Q ss_pred EEcCCccccccCC-CCcceeeecCC
Q 046635 88 GLISNQMDALIGQ-SLGKRVFKIPN 111 (128)
Q Consensus 88 gnIGDQwSDL~G~-~~g~RtFKLPN 111 (128)
.-|||..+|+... .+|.++.-+.|
T Consensus 181 v~vGD~~~Di~~a~~aG~~~v~~~~ 205 (231)
T 3kzx_A 181 FFIGDSISDIQSAIEAGCLPIKYGS 205 (231)
T ss_dssp EEEESSHHHHHHHHHTTCEEEEECC
T ss_pred EEEcCCHHHHHHHHHCCCeEEEECC
Confidence 4899999999774 45656665544
No 16
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=25.72 E-value=64 Score=24.42 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=31.7
Q ss_pred HHHHHHHHcCCCcccccCCceeee-cCCCCCcchhhhhHHHHHHHHHcCceEEEEc
Q 046635 36 VTNSNIYVFAYSLEFVENGLHSCR-LDNEMQMDSREYLSRRRAILQKEGFHITGLI 90 (128)
Q Consensus 36 aT~~NL~~aGY~~~~~~~~~LiLR-~~~~~~~sa~~YKS~~R~~Le~~GYrIvgnI 90 (128)
.+..=|-++|-.. -..++-- ++.+...++..+-.+..+.+.++||+|. |+
T Consensus 47 i~DAlLGA~~lGD----IG~~Fpdtd~~~kga~S~~lL~~~~~~v~~~G~~i~-Nv 97 (160)
T 2pmp_A 47 VVDAILGALGLPD----IGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIG-NL 97 (160)
T ss_dssp HHHHHHHHHTCCC----HHHHSCSSCSSCSSCCHHHHHHHHHHHHHHHTEEEE-EE
T ss_pred HHHHHHHhccCCC----CcccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEE-EE
Confidence 3444455566542 3333321 1234566788899999999999999986 54
No 17
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=25.68 E-value=1.1e+02 Score=20.67 Aligned_cols=91 Identities=9% Similarity=-0.029 Sum_probs=45.3
Q ss_pred HHHHHHHhcCccccc-cchhhhHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCce--EEEEc
Q 046635 14 RRATDFLAQGYFNPF-VGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFH--ITGLI 90 (128)
Q Consensus 14 r~~~~~~~q~~~~~~-~~~~~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYr--IvgnI 90 (128)
+.+...|.+-++..+ ++......+..-|...|.... .+.++........++.. ..-+.-++..|.. =+.-|
T Consensus 92 ~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~---f~~~~~~~~~~~~kp~~---~~~~~~~~~lgi~~~~~i~i 165 (226)
T 3mc1_A 92 EALLSSLKDYGFHLVVATSKPTVFSKQILEHFKLAFY---FDAIVGSSLDGKLSTKE---DVIRYAMESLNIKSDDAIMI 165 (226)
T ss_dssp HHHHHHHHHHTCEEEEEEEEEHHHHHHHHHHTTCGGG---CSEEEEECTTSSSCSHH---HHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCHhh---eeeeeccCCCCCCCCCH---HHHHHHHHHhCcCcccEEEE
Confidence 344444444333333 333455567777888887652 23333333222222211 1122333444432 23479
Q ss_pred CCccccccCC-CCcceeeecC
Q 046635 91 SNQMDALIGQ-SLGKRVFKIP 110 (128)
Q Consensus 91 GDQwSDL~G~-~~g~RtFKLP 110 (128)
||..+|+.+. .+|.+++-+.
T Consensus 166 GD~~~Di~~a~~aG~~~i~v~ 186 (226)
T 3mc1_A 166 GDREYDVIGALKNNLPSIGVT 186 (226)
T ss_dssp ESSHHHHHHHHTTTCCEEEES
T ss_pred CCCHHHHHHHHHCCCCEEEEc
Confidence 9999999864 5565555443
No 18
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=23.66 E-value=20 Score=20.46 Aligned_cols=9 Identities=33% Similarity=1.309 Sum_probs=7.6
Q ss_pred Cccccccch
Q 046635 111 NPLYYSFDH 119 (128)
Q Consensus 111 NPmYyi~e~ 119 (128)
||+||.|+.
T Consensus 1 dPF~yDy~t 9 (31)
T 3n2f_G 1 DPFYYDYET 9 (31)
T ss_dssp CCCCCCHHH
T ss_pred CCCCCChHH
Confidence 799999875
No 19
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=23.20 E-value=73 Score=24.17 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCCcccccCCceeee-cCCCCCcchhhhhHHHHHHHHHcCceEEEEc
Q 046635 36 VTNSNIYVFAYSLEFVENGLHSCR-LDNEMQMDSREYLSRRRAILQKEGFHITGLI 90 (128)
Q Consensus 36 aT~~NL~~aGY~~~~~~~~~LiLR-~~~~~~~sa~~YKS~~R~~Le~~GYrIvgnI 90 (128)
.+..=|-++|-.. -..++-- ++.+...++..+-.+..+.+.++||+|. ||
T Consensus 50 i~DAlLGA~~lGD----IG~~Fpdtdp~~kga~S~~lL~~~~~~v~~~G~~i~-Nv 100 (162)
T 3re3_A 50 LCDAILGALGLGD----IGKHFLDTDNQFKNIDSKFFLAEIKKMLDKKQYSIS-NI 100 (162)
T ss_dssp HHHHHHHHTTCCC----HHHHC-------CCSCHHHHHHHHHHHHHHTTCEEE-EE
T ss_pred HHHHHHHhccCCC----CcccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEE-EE
Confidence 4455555666542 2333321 2345667888899999999999999986 54
No 20
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=22.66 E-value=68 Score=24.30 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=22.1
Q ss_pred CCCcchhhhhHHHHHHHHHcCceEEEEc
Q 046635 63 EMQMDSREYLSRRRAILQKEGFHITGLI 90 (128)
Q Consensus 63 ~~~~sa~~YKS~~R~~Le~~GYrIvgnI 90 (128)
+...++..+-.+..+.+.++||+|. |+
T Consensus 69 ~kga~S~~lL~~~~~~v~~~G~~i~-Nv 95 (160)
T 1gx1_A 69 FKGADSRELLREAWRRIQAKGYTLG-NV 95 (160)
T ss_dssp GTTCCHHHHHHHHHHHHHHTTCEEE-EE
T ss_pred hCCCCHHHHHHHHHHHHHHcCCEEE-EE
Confidence 4566788888999999999999986 54
No 21
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=22.43 E-value=65 Score=24.37 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=22.2
Q ss_pred CCCcchhhhhHHHHHHHHHcCceEEEEc
Q 046635 63 EMQMDSREYLSRRRAILQKEGFHITGLI 90 (128)
Q Consensus 63 ~~~~sa~~YKS~~R~~Le~~GYrIvgnI 90 (128)
+...++..+-.+..+.+.++||+|. |+
T Consensus 70 ~kga~S~~lL~~~~~~v~~~G~~i~-Nv 96 (159)
T 1t0a_A 70 YKGADSRVLLRHCYALAKAKGFELG-NL 96 (159)
T ss_dssp GTTCCHHHHHHHHHHHHHHTTEEEE-EE
T ss_pred hCCCCHHHHHHHHHHHHHHcCCEEE-EE
Confidence 3566788889999999999999986 54
No 22
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=21.82 E-value=78 Score=24.51 Aligned_cols=50 Identities=22% Similarity=0.163 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCCcccccCCceeee-cCCCCCcchhhhhHHHHHHHHHcCceEEEEc
Q 046635 36 VTNSNIYVFAYSLEFVENGLHSCR-LDNEMQMDSREYLSRRRAILQKEGFHITGLI 90 (128)
Q Consensus 36 aT~~NL~~aGY~~~~~~~~~LiLR-~~~~~~~sa~~YKS~~R~~Le~~GYrIvgnI 90 (128)
.+..=|-++|... -..++-- ++.+...++..+-....+.+.++||+|. ||
T Consensus 67 i~DALLGA~glGD----IG~~FPdtDp~~kgadS~~lL~~~~~lv~~~G~~I~-Nv 117 (183)
T 3f0d_A 67 ITDALFGAAALGD----IGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIR-NV 117 (183)
T ss_dssp HHHHHHHHTTCCC----HHHHSCC----CTTCCHHHHHHHHHHHHHHTTEEEE-EE
T ss_pred HHHHHHHhhcCCC----CcccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEE-EE
Confidence 4444555556432 2223321 2334567888899999999999999986 54
No 23
>2uzh_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; ISPF, lyase, mycobacteria, complex with CDP; HET: CDP IPE; 2.2A {Mycobacterium smegmatis}
Probab=21.41 E-value=70 Score=24.39 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=22.0
Q ss_pred CCCcchhhhhHHHHHHHHHcCceEEEEc
Q 046635 63 EMQMDSREYLSRRRAILQKEGFHITGLI 90 (128)
Q Consensus 63 ~~~~sa~~YKS~~R~~Le~~GYrIvgnI 90 (128)
+...++..+-.+..+.+.++||+|. ||
T Consensus 73 ~kga~S~~lL~~~~~~v~~~G~~i~-Nv 99 (165)
T 2uzh_A 73 WRGASGADMIRHVRGLVENAGFVIG-NA 99 (165)
T ss_dssp GTTCCHHHHHHHHHHHHHHTTEEEE-EE
T ss_pred hCCCCHHHHHHHHHHHHHHcCCEEE-EE
Confidence 3566788888999999999999986 54
No 24
>2hfq_A Hypothetical protein; A/B protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Nitrosomonas europaea} SCOP: d.375.1.1
Probab=21.08 E-value=99 Score=22.23 Aligned_cols=56 Identities=9% Similarity=0.127 Sum_probs=38.5
Q ss_pred cccccchh----hhHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEE
Q 046635 25 FNPFVGTK----VLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHIT 87 (128)
Q Consensus 25 ~~~~~~~~----~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIv 87 (128)
|+.+++.+ +.+.-.+=|...|..+ ..+- ...=..+.+..=-.+.++.|.+.||-|+
T Consensus 42 FDVlv~~~n~eka~~yaK~yL~siG~~~-----~~vT--~~eC~FCHsE~A~~ev~~~I~~~Gy~I~ 101 (109)
T 2hfq_A 42 FDVFTDVRDDKKAIEFAKQWLSSIGEEG-----ATVT--SEECRFCHSEKAPDEVIEAIKQNGYFIY 101 (109)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHTCCC-----SCCC--TTTBCCCEEEECCHHHHHHHHHHSEEEE
T ss_pred EEEEeCCcCHHHHHHHHHHHHHhcCcCC-----Cccc--hhhCcccccccCCHHHHHHHHHCCEEEE
Confidence 66677665 6677888999999987 3322 2222334444445678899999999998
No 25
>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}
Probab=20.80 E-value=1.3e+02 Score=20.30 Aligned_cols=93 Identities=8% Similarity=-0.107 Sum_probs=43.6
Q ss_pred HHHHHHHhcCccccccc-hhhhHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCce--EEEEc
Q 046635 14 RRATDFLAQGYFNPFVG-TKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFH--ITGLI 90 (128)
Q Consensus 14 r~~~~~~~q~~~~~~~~-~~~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYr--IvgnI 90 (128)
+.+...|.+-++..++. ....+....-|...|.... .+.++-.......++.. ..-+..++..|.. =+.-|
T Consensus 102 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~---f~~~~~~~~~~~~kp~~---~~~~~~~~~~~~~~~~~~~i 175 (230)
T 3um9_A 102 PQALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLTNS---FDHLISVDEVRLFKPHQ---KVYELAMDTLHLGESEILFV 175 (230)
T ss_dssp HHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHTCGGG---CSEEEEGGGTTCCTTCH---HHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHhCCCeEEEEeCCCHHHHHHHHHHCCChhh---cceeEehhhcccCCCCh---HHHHHHHHHhCCCcccEEEE
Confidence 34444444444443333 3344455566666676541 23333222211122211 1223334444532 13478
Q ss_pred CCccccccCC-CCcceeeecCCc
Q 046635 91 SNQMDALIGQ-SLGKRVFKIPNP 112 (128)
Q Consensus 91 GDQwSDL~G~-~~g~RtFKLPNP 112 (128)
||..+|+.+. .+|.++.-+..+
T Consensus 176 GD~~~Di~~a~~aG~~~~~~~~~ 198 (230)
T 3um9_A 176 SCNSWDATGAKYFGYPVCWINRS 198 (230)
T ss_dssp ESCHHHHHHHHHHTCCEEEECTT
T ss_pred eCCHHHHHHHHHCCCEEEEEeCC
Confidence 9999999874 445555554433
No 26
>3b6n_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; malaria isoprenoid biosynthesis and prenylation pathways ISPF; 2.26A {Plasmodium vivax sai-1}
Probab=20.17 E-value=76 Score=24.69 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCCcccccCCceeeec-CCCCCcchhhhhHHHHHHHHHcCceEEEEc
Q 046635 36 VTNSNIYVFAYSLEFVENGLHSCRL-DNEMQMDSREYLSRRRAILQKEGFHITGLI 90 (128)
Q Consensus 36 aT~~NL~~aGY~~~~~~~~~LiLR~-~~~~~~sa~~YKS~~R~~Le~~GYrIvgnI 90 (128)
.+-.=|-++|-.- -..++--+ +.+...++..|-...++.+.+.||+|. ||
T Consensus 72 i~DAlLGA~~lGD----IG~~FPdtdp~~kga~S~~lL~~a~~l~~~~Gy~I~-Nv 122 (187)
T 3b6n_A 72 LVDALLGGMSCSD----LGTLFPDGSPKYKNKNSLSFLRYARLLLYKRNYAIA-NV 122 (187)
T ss_dssp HHHHHHHHTTCC-------------------CCTHHHHHHHHHHHHHTTEEEE-EE
T ss_pred HHHHHHHhccCCC----CcccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEE-EE
Confidence 3444455555543 44444322 234577888999999999999999986 54
No 27
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A
Probab=20.15 E-value=1.5e+02 Score=20.55 Aligned_cols=89 Identities=10% Similarity=-0.023 Sum_probs=42.0
Q ss_pred HHHHHHHhcCcccc-ccchhhhHHHHHHHHHcCCCcccccCCceeeecCCCCCcc-hhhhhHHHHHHHHHcCc---eEEE
Q 046635 14 RRATDFLAQGYFNP-FVGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMD-SREYLSRRRAILQKEGF---HITG 88 (128)
Q Consensus 14 r~~~~~~~q~~~~~-~~~~~~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~s-a~~YKS~~R~~Le~~GY---rIvg 88 (128)
+.+...|.+-++.. +++.........-|...|.... .+.++........++ ...| +..++..|. ++ .
T Consensus 89 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~---f~~i~~~~~~~~~Kp~~~~~----~~~~~~~~~~~~~~-~ 160 (222)
T 2nyv_A 89 PYTLEALKSKGFKLAVVSNKLEELSKKILDILNLSGY---FDLIVGGDTFGEKKPSPTPV----LKTLEILGEEPEKA-L 160 (222)
T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGG---CSEEECTTSSCTTCCTTHHH----HHHHHHHTCCGGGE-E
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCHHH---heEEEecCcCCCCCCChHHH----HHHHHHhCCCchhE-E
Confidence 33444444434443 3333344456666777776531 233332221111222 2222 223333343 34 4
Q ss_pred EcCCccccccCC-CCcceeeecC
Q 046635 89 LISNQMDALIGQ-SLGKRVFKIP 110 (128)
Q Consensus 89 nIGDQwSDL~G~-~~g~RtFKLP 110 (128)
-|||..+|+.+. .+|.+++-+.
T Consensus 161 ~vGD~~~Di~~a~~aG~~~i~v~ 183 (222)
T 2nyv_A 161 IVGDTDADIEAGKRAGTKTALAL 183 (222)
T ss_dssp EEESSHHHHHHHHHHTCEEEEET
T ss_pred EECCCHHHHHHHHHCCCeEEEEc
Confidence 799999999764 3455544443
Done!