BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046636
         (103 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From
           Bacillus Subtilis
 pdb|1TF5|A Chain A, Crystal Structure Of Seca In An Open Conformation From
           Bacillus Subtilis
          Length = 844

 Score = 35.8 bits (81), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/20 (70%), Positives = 14/20 (70%)

Query: 30  IPRNKVCPCGSKKKYKACCG 49
           I RN  C CGS KKYK CCG
Sbjct: 822 IGRNAPCHCGSGKKYKNCCG 841


>pdb|3IQY|A Chain A, Active Site Mutants Of B. Subtilis Seca
          Length = 841

 Score = 35.8 bits (81), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/20 (70%), Positives = 14/20 (70%)

Query: 30  IPRNKVCPCGSKKKYKACCG 49
           I RN  C CGS KKYK CCG
Sbjct: 819 IGRNAPCHCGSGKKYKNCCG 838


>pdb|1OZB|I Chain I, Crystal Structure Of Secb Complexed With Seca C-Terminus
 pdb|1OZB|J Chain J, Crystal Structure Of Secb Complexed With Seca C-Terminus
          Length = 27

 Score = 32.7 bits (73), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 29 KIPRNKVCPCGSKKKYKACCGTAAGRS 55
          +I RN+ CPCGS KKYK C G+   R 
Sbjct: 1  RIGRNEPCPCGSGKKYKHCHGSRVARQ 27


>pdb|1SX0|A Chain A, Solution Nmr Structure And X-Ray Absorption Analysis Of
          The C-Terminal Zinc-Binding Domain Of The Seca Atpase
 pdb|1SX1|A Chain A, Solution Nmr Structure And X-ray Absorption Analysis Of
          The C-terminal Zinc-binding Domain Of The Seca Atpase
          Length = 22

 Score = 30.0 bits (66), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 29 KIPRNKVCPCGSKKKYKACCG 49
          K+ RN  CPCGS KKYK C G
Sbjct: 1  KVGRNDPCPCGSGKKYKQCHG 21


>pdb|1TM6|A Chain A, Nmr Structure Of The Free Zinc Binding C-Terminal Domain
          Of Seca
          Length = 22

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 13/18 (72%), Positives = 13/18 (72%)

Query: 32 RNKVCPCGSKKKYKACCG 49
          RN  CPCGS KKYK C G
Sbjct: 2  RNDPCPCGSGKKYKQCHG 19


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.126    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,504,427
Number of Sequences: 62578
Number of extensions: 62624
Number of successful extensions: 71
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 8
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)