BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046636
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q30RR0|SECA_SULDN Protein translocase subunit SecA OS=Sulfurimonas denitrificans
(strain ATCC 33889 / DSM 1251) GN=secA PE=3 SV=1
Length = 857
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 13 SIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAA 52
SI+ +H S + KKI RN +CPCGS KKYK CCG +
Sbjct: 810 SIQFNHYQSEMENESKKISRNDLCPCGSGKKYKLCCGKSG 849
>sp|A7GYW4|SECA_CAMC5 Protein translocase subunit SecA OS=Campylobacter curvus (strain
525.92) GN=secA PE=3 SV=1
Length = 869
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/26 (73%), Positives = 20/26 (76%)
Query: 27 EKKIPRNKVCPCGSKKKYKACCGTAA 52
EKKIPRN CPCGS KKYK CCG +
Sbjct: 837 EKKIPRNSPCPCGSGKKYKDCCGKSG 862
>sp|A3DF88|SECA_CLOTH Protein translocase subunit SecA OS=Clostridium thermocellum
(strain ATCC 27405 / DSM 1237) GN=secA PE=3 SV=1
Length = 910
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 2 NKTCELDKSSNSIKRSHDDSRFKP--NEKKIPRNKVCPCGSKKKYKACCG 49
N+ + K + + SH + KP K+ RN++CPCGS KKYK CCG
Sbjct: 858 NRMPQRQKVAEPVTASHGEEVRKPVVKRNKVGRNELCPCGSGKKYKKCCG 907
>sp|A7ZD16|SECA_CAMC1 Protein translocase subunit SecA OS=Campylobacter concisus (strain
13826) GN=secA PE=3 SV=1
Length = 868
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/34 (61%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 19 DDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAA 52
+D F P EKKIPRN CPCGS KKYK C G +
Sbjct: 829 EDENFTP-EKKIPRNAPCPCGSGKKYKDCHGKSG 861
>sp|B1H018|SECA_UNCTG Protein translocase subunit SecA OS=Uncultured termite group 1
bacterium phylotype Rs-D17 GN=secA PE=3 SV=1
Length = 860
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 9 KSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCG 49
+++NS R +D + KI RN CPCGS KK+K CCG
Sbjct: 819 QTTNSDFRKNDGKKINKGSNKIGRNDQCPCGSGKKFKKCCG 859
>sp|Q97F94|SECA_CLOAB Protein translocase subunit SecA OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=secA PE=3 SV=1
Length = 839
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 20 DSRFKP---NEKKIPRNKVCPCGSKKKYKACCGTAA 52
D++ +P EKKI RN +CPCGS KKYK CCG A
Sbjct: 804 DTKKEPVRRKEKKIGRNDLCPCGSGKKYKDCCGRRA 839
>sp|A0LCX0|SECA1_MAGSM Protein translocase subunit SecA 1 OS=Magnetococcus sp. (strain
MC-1) GN=secA1 PE=3 SV=1
Length = 901
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 23 FKPNEKKIPRNKVCPCGSKKKYKACCG 49
FK + +K+ RN+ CPCGS KKYK CCG
Sbjct: 872 FKRDGEKVGRNQACPCGSGKKYKQCCG 898
>sp|A8EUE3|SECA_ARCB4 Protein translocase subunit SecA OS=Arcobacter butzleri (strain
RM4018) GN=secA PE=3 SV=1
Length = 872
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 6 ELDKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAA 52
+++KS+ I + K ++KKI RN+ CPCGS KYK CCG +
Sbjct: 817 QMEKSTEHITTNIAQEAVKNSDKKIARNEPCPCGSGLKYKQCCGKSG 863
>sp|B1IE50|SECA_CLOBK Protein translocase subunit SecA OS=Clostridium botulinum (strain
Okra / Type B1) GN=secA PE=3 SV=1
Length = 835
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 1 LNKTCELDKSSNSIKRSHDDSRFKPN----EKKIPRNKVCPCGSKKKYKACCGTAA 52
+ K E +K + ++D+ K E +I RN +CPCGS KKYK CCG A
Sbjct: 780 IEKAPEREKVAKETSTNYDEDSVKKQPIKKENRIGRNDMCPCGSGKKYKNCCGRMA 835
>sp|Q5WW88|SECA_LEGPL Protein translocase subunit SecA OS=Legionella pneumophila (strain
Lens) GN=secA PE=3 SV=1
Length = 896
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 23 FKPNEKKIPRNKVCPCGSKKKYKACCGT 50
F+ EKKI RN CPCGS KKYKAC G+
Sbjct: 867 FRRQEKKIGRNDPCPCGSGKKYKACHGS 894
>sp|Q5ZVH7|SECA_LEGPH Protein translocase subunit SecA OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=secA PE=3 SV=2
Length = 896
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 23 FKPNEKKIPRNKVCPCGSKKKYKACCGT 50
F+ EKKI RN CPCGS KKYKAC G+
Sbjct: 867 FRRQEKKIGRNDPCPCGSGKKYKACHGS 894
>sp|A5IBV4|SECA_LEGPC Protein translocase subunit SecA OS=Legionella pneumophila (strain
Corby) GN=secA PE=3 SV=2
Length = 896
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 23 FKPNEKKIPRNKVCPCGSKKKYKACCGT 50
F+ EKKI RN CPCGS KKYKAC G+
Sbjct: 867 FRRQEKKIGRNDPCPCGSGKKYKACHGS 894
>sp|Q5X5A1|SECA_LEGPA Protein translocase subunit SecA OS=Legionella pneumophila (strain
Paris) GN=secA PE=3 SV=1
Length = 896
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 23 FKPNEKKIPRNKVCPCGSKKKYKACCGT 50
F+ EKKI RN CPCGS KKYKAC G+
Sbjct: 867 FRRQEKKIGRNDPCPCGSGKKYKACHGS 894
>sp|A7G9S6|SECA_CLOBL Protein translocase subunit SecA OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=secA PE=3 SV=1
Length = 835
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 1 LNKTCELDKSSNSIKRSHDDSRFKPN----EKKIPRNKVCPCGSKKKYKACCGTAA 52
+ K E +K + ++D+ K E +I RN +CPCGS KKYK CCG A
Sbjct: 780 VEKAPEREKVAKETSTNYDEDSVKKQPIKKENRIGRNDMCPCGSGKKYKNCCGRMA 835
>sp|C3KYK9|SECA_CLOB6 Protein translocase subunit SecA OS=Clostridium botulinum (strain
657 / Type Ba4) GN=secA PE=3 SV=1
Length = 835
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 1 LNKTCELDKSSNSIKRSHDDSRFKPN----EKKIPRNKVCPCGSKKKYKACCGTAA 52
+ K E +K + ++D+ K E +I RN +CPCGS KKYK CCG A
Sbjct: 780 VEKAPEREKVAKETSTNYDEDSVKKQPIKKENRIGRNDLCPCGSGKKYKNCCGRMA 835
>sp|A5HY67|SECA_CLOBH Protein translocase subunit SecA OS=Clostridium botulinum (strain
Hall / ATCC 3502 / NCTC 13319 / Type A) GN=secA PE=3
SV=1
Length = 835
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 1 LNKTCELDKSSNSIKRSHDDSRFKPN----EKKIPRNKVCPCGSKKKYKACCGTAA 52
+ K E +K + ++D+ K E +I RN +CPCGS KKYK CCG A
Sbjct: 780 VEKAPEREKVAKETSTNYDEDSVKKQPIKKENRIGRNDMCPCGSGKKYKNCCGRMA 835
>sp|A7FQJ3|SECA_CLOB1 Protein translocase subunit SecA OS=Clostridium botulinum (strain
ATCC 19397 / Type A) GN=secA PE=3 SV=1
Length = 835
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 1 LNKTCELDKSSNSIKRSHDDSRFKPN----EKKIPRNKVCPCGSKKKYKACCGTAA 52
+ K E +K + ++D+ K E +I RN +CPCGS KKYK CCG A
Sbjct: 780 VEKAPEREKVAKETSTNYDEDSVKKQPIKKENRIGRNDMCPCGSGKKYKNCCGRMA 835
>sp|C1FQR0|SECA_CLOBJ Protein translocase subunit SecA OS=Clostridium botulinum (strain
Kyoto / Type A2) GN=secA PE=3 SV=1
Length = 835
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 1 LNKTCELDKSSNSIKRSHDDSRFKPN----EKKIPRNKVCPCGSKKKYKACCGTAA 52
+ K E +K + ++D+ K E +I RN +CPCGS KKYK CCG A
Sbjct: 780 VEKAPEREKVAKETSTNYDEDSVKKQPIKKENRIGRNDMCPCGSGKKYKNCCGRMA 835
>sp|B1KSU4|SECA_CLOBM Protein translocase subunit SecA OS=Clostridium botulinum (strain
Loch Maree / Type A3) GN=secA PE=3 SV=1
Length = 835
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 1 LNKTCELDKSSNSIKRSHDDSRFKPN----EKKIPRNKVCPCGSKKKYKACCGTAA 52
+ K E +K + ++D+ K E +I RN +CPCGS KKYK CCG A
Sbjct: 780 VEKAPEREKVAKETSTNYDEDSVKKQPIKKENRIGRNDMCPCGSGKKYKNCCGRMA 835
>sp|Q8RCB4|SECA_THETN Protein translocase subunit SecA OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=secA PE=3 SV=2
Length = 898
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 20 DSRFKP--NEKKIPRNKVCPCGSKKKYKACCG 49
D++ +P EKK+ RN CPCGS KKYK CCG
Sbjct: 863 DNKKQPVVKEKKVGRNDPCPCGSGKKYKKCCG 894
>sp|A1SU27|SECA_PSYIN Protein translocase subunit SecA OS=Psychromonas ingrahamii (strain
37) GN=secA PE=3 SV=1
Length = 906
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 3 KTCELDKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCG 49
K +++K + D F NEKK+ RN+ CPCGS KKYK C G
Sbjct: 857 KHAQVNKGEVVSDENTGDDTFVRNEKKVGRNEPCPCGSGKKYKQCHG 903
>sp|A0Q2X7|SECA_CLONN Protein translocase subunit SecA OS=Clostridium novyi (strain NT)
GN=secA PE=3 SV=1
Length = 834
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 24 KPNEKKIPRNKVCPCGSKKKYKACCG 49
K E+KI RN +CPCGS KKYK CCG
Sbjct: 808 KRKEEKIGRNDLCPCGSGKKYKNCCG 833
>sp|C0QI23|SECA_DESAH Protein translocase subunit SecA OS=Desulfobacterium autotrophicum
(strain ATCC 43914 / DSM 3382 / HRM2) GN=secA PE=3 SV=1
Length = 840
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 9 KSSNSIKRSHDDSRFKP----NEKKIPRNKVCPCGSKKKYKACCG 49
+ N + DDS K ++K+ RN +CPCGS KKYK CCG
Sbjct: 795 RQENLVFSHSDDSNVKKPVKRAQEKVGRNDLCPCGSGKKYKKCCG 839
>sp|Q67T83|SECA_SYMTH Protein translocase subunit SecA OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=secA PE=3 SV=1
Length = 903
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 28 KKIPRNKVCPCGSKKKYKACCGTAA 52
KK+ RN CPCGS KKYK CCG AA
Sbjct: 877 KKVGRNDPCPCGSGKKYKFCCGRAA 901
>sp|A0RNI3|SECA_CAMFF Protein translocase subunit SecA OS=Campylobacter fetus subsp.
fetus (strain 82-40) GN=secA PE=3 SV=1
Length = 855
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 3 KTCELDKSSNSIKRSHDDSRFKPN-EKKIPRNKVCPCGSKKKYKACCGTAA 52
KT + + + ++++ D++ + EKK RN+ CPCGS KKYK CCG +
Sbjct: 798 KTEDDENTDRALEKMQDEANLQNKFEKKPARNEPCPCGSGKKYKDCCGKSG 848
>sp|Q3AFQ0|SECA_CARHZ Protein translocase subunit SecA OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=secA PE=3
SV=1
Length = 874
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 16 RSHDDSRFKP--NEKKIPRNKVCPCGSKKKYKACCG 49
R ++ KP E+KI RN CPCGS KKYK CCG
Sbjct: 836 RYQEEGPKKPYRREQKIGRNDPCPCGSGKKYKKCCG 871
>sp|A1U3E9|SECA_MARAV Protein translocase subunit SecA OS=Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8) GN=secA PE=3 SV=1
Length = 912
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 23 FKPNEKKIPRNKVCPCGSKKKYKACCGTAA 52
F E+K+ RN+ CPCGS KKYK CCG +
Sbjct: 883 FVRQERKVGRNEPCPCGSGKKYKQCCGKVS 912
>sp|Q0B0B4|SECA_SYNWW Protein translocase subunit SecA OS=Syntrophomonas wolfei subsp.
wolfei (strain Goettingen) GN=secA PE=3 SV=1
Length = 830
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/22 (77%), Positives = 18/22 (81%)
Query: 28 KKIPRNKVCPCGSKKKYKACCG 49
KKI RN +CPCGS KKYK CCG
Sbjct: 805 KKIGRNDLCPCGSGKKYKKCCG 826
>sp|B0TGY6|SECA_HELMI Protein translocase subunit SecA OS=Heliobacterium modesticaldum
(strain ATCC 51547 / Ice1) GN=secA PE=3 SV=1
Length = 843
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 12 NSIKRSHDDSRFK---PNEKKIPRNKVCPCGSKKKYKACCG 49
N+++ DDS K E ++ RN CPCGS KKYK CCG
Sbjct: 800 NAVENRSDDSLPKQPVKAEPRVGRNDPCPCGSGKKYKKCCG 840
>sp|Q3ARU5|SECA1_CHLCH Protein translocase subunit SecA 1 OS=Chlorobium chlorochromatii
(strain CaD3) GN=secA1 PE=3 SV=1
Length = 1017
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 27 EKKIPRNKVCPCGSKKKYKACCG 49
E+K RN +CPCGS KKYKACCG
Sbjct: 994 EQKPGRNDLCPCGSGKKYKACCG 1016
>sp|Q31I38|SECA_THICR Protein translocase subunit SecA OS=Thiomicrospira crunogena
(strain XCL-2) GN=secA PE=3 SV=1
Length = 910
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 7 LDKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCG 49
++ +++ + D+ ++ K+ RN CPCGS KKYK CCG
Sbjct: 865 MNNAASDSETDSSDATYRRETPKVGRNDPCPCGSGKKYKQCCG 907
>sp|Q898W1|SECA_CLOTE Protein translocase subunit SecA OS=Clostridium tetani (strain
Massachusetts / E88) GN=secA PE=3 SV=2
Length = 836
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 6 ELDKSSNSIKRSHDDSRFKP--NEKKIPRNKVCPCGSKKKYKACCG 49
++ K +++ + D + +P E KI RN +CPCGS KKYK CCG
Sbjct: 788 QVAKETSTNQGGDDTLKKQPIKKEPKIGRNDLCPCGSGKKYKNCCG 833
>sp|A5N3B2|SECA_CLOK5 Protein translocase subunit SecA OS=Clostridium kluyveri (strain
ATCC 8527 / DSM 555 / NCIMB 10680) GN=secA PE=3 SV=1
Length = 834
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
Query: 8 DKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCG 49
++ S+SIK++ EK + RN +CPCGS KKYK CCG
Sbjct: 795 NQESDSIKKTP-----VKREKTVGRNDLCPCGSGKKYKNCCG 831
>sp|A6TLE7|SECA1_ALKMQ Protein translocase subunit SecA 1 OS=Alkaliphilus metalliredigens
(strain QYMF) GN=secA1 PE=3 SV=1
Length = 891
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 6 ELDKSSNSIKRSHDDSRFKP----NEKKIPRNKVCPCGSKKKYKACCG 49
E + + I+ SH D K EK+ RN CPCGS KKYK CCG
Sbjct: 843 ERKQVAKPIEASHGDGNRKKAPVVKEKEAGRNDPCPCGSGKKYKKCCG 890
>sp|A5GEX9|SECA_GEOUR Protein translocase subunit SecA OS=Geobacter uraniireducens
(strain Rf4) GN=secA PE=3 SV=1
Length = 894
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 28 KKIPRNKVCPCGSKKKYKACCG 49
KK+ RN+ CPCGS KKYK CCG
Sbjct: 872 KKVGRNEPCPCGSGKKYKQCCG 893
>sp|Q0A6V9|SECA_ALHEH Protein translocase subunit SecA OS=Alkalilimnicola ehrlichei
(strain MLHE-1) GN=secA PE=3 SV=1
Length = 909
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 25 PNEKKIPRNKVCPCGSKKKYKACCG 49
P +K+ RN+ CPCGS KKYK CCG
Sbjct: 882 PFGRKVGRNEPCPCGSGKKYKQCCG 906
>sp|Q9CLK7|SECA_PASMU Protein translocase subunit SecA OS=Pasteurella multocida (strain
Pm70) GN=secA PE=3 SV=1
Length = 895
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 9 KSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAA 52
+ + S++ + D+ + N +++ RN+ CPCGS KKYK C G+ A
Sbjct: 850 RETASMQYNADEDSGEENTRRVGRNEPCPCGSGKKYKHCHGSKA 893
>sp|A5CYJ1|SECA_PELTS Protein translocase subunit SecA OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=secA PE=3 SV=1
Length = 886
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 27 EKKIPRNKVCPCGSKKKYKACCGTA 51
E K+ RN CPCGS +KYK CCG A
Sbjct: 859 ENKVGRNDPCPCGSGRKYKKCCGRA 883
>sp|A6QAC7|SECA_SULNB Protein translocase subunit SecA OS=Sulfurovum sp. (strain NBC37-1)
GN=secA PE=3 SV=1
Length = 879
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 17 SHDDSRFKP--NEKKIPRNKVCPCGSKKKYKACCGTAA 52
+ D + KP KK RN CPCGS KKYK CCG +
Sbjct: 835 AEDSEKLKPITGTKKPKRNDPCPCGSGKKYKNCCGQSG 872
>sp|B9M3K9|SECA_GEOSF Protein translocase subunit SecA OS=Geobacter sp. (strain FRC-32)
GN=secA PE=3 SV=1
Length = 894
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 28 KKIPRNKVCPCGSKKKYKACCG 49
KK+ RN+ CPCGS KKYK CCG
Sbjct: 872 KKVGRNEPCPCGSGKKYKQCCG 893
>sp|A5CY18|SECA_VESOH Protein translocase subunit SecA OS=Vesicomyosocius okutanii subsp.
Calyptogena okutanii (strain HA) GN=secA PE=3 SV=1
Length = 897
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 11 SNSIKRSHDD-SRFKPNEKKIPRNKVCPCGSKKKYKACCG 49
+N+I+ D + ++ EKK+ RN+ CPCGS KKYK C G
Sbjct: 858 TNNIQTQTDQQNTYQRKEKKVGRNEPCPCGSGKKYKKCHG 897
>sp|A5EY15|SECA_DICNV Protein translocase subunit SecA OS=Dichelobacter nodosus (strain
VCS1703A) GN=secA PE=3 SV=1
Length = 906
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 9 KSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCG 49
+S+N S + + K+ RN+ CPCGS KKYK CCG
Sbjct: 864 QSTNDATASQNPPITEVEASKVGRNQPCPCGSGKKYKHCCG 904
>sp|B2KAS3|SECA_ELUMP Protein translocase subunit SecA OS=Elusimicrobium minutum (strain
Pei191) GN=secA PE=3 SV=1
Length = 866
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 26 NEKKIPRNKVCPCGSKKKYKACCG 49
+ KKI RN CPCGS KKYK CCG
Sbjct: 840 SNKKIGRNDPCPCGSGKKYKKCCG 863
>sp|A4IST9|SECA1_GEOTN Protein translocase subunit SecA 1 OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=secA1 PE=3 SV=2
Length = 837
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 15 KRSHDDSRFKPNEK--KIPRNKVCPCGSKKKYKACCGTA 51
K ++ + KP K ++ RN CPCGS KKYK CCG A
Sbjct: 798 KEDGEEPKKKPIRKAVRVGRNDPCPCGSGKKYKHCCGRA 836
>sp|Q2RLX5|SECA_MOOTA Protein translocase subunit SecA OS=Moorella thermoacetica (strain
ATCC 39073) GN=secA PE=3 SV=1
Length = 896
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 27 EKKIPRNKVCPCGSKKKYKACCGTA 51
E K+ RN CPCGS KKYK CCG
Sbjct: 871 EHKVGRNDPCPCGSGKKYKKCCGAG 895
>sp|Q18CN0|SECA1_CLOD6 Protein translocase subunit SecA 1 OS=Clostridium difficile (strain
630) GN=secA1 PE=3 SV=1
Length = 891
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 21 SRFKPNEKKIPRNKVCPCGSKKKYKACCG 49
S+ ++K+ RN +CPCGS KKYK CCG
Sbjct: 862 SKTVKKDEKVGRNDLCPCGSGKKYKNCCG 890
>sp|A1URS7|SECA_BARBK Protein translocase subunit SecA OS=Bartonella bacilliformis
(strain ATCC 35685 / KC583) GN=secA PE=3 SV=1
Length = 910
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 11 SNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGT 50
S+ IKR DS +K+ RN++CPCGS KKYK C G+
Sbjct: 867 SDPIKRDPGDSS---TWEKVGRNELCPCGSSKKYKHCHGS 903
>sp|B6ELG8|SECA_ALISL Protein translocase subunit SecA OS=Aliivibrio salmonicida (strain
LFI1238) GN=secA PE=3 SV=1
Length = 907
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 2 NKTCELDKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCG 49
N +LD +S + S +E+K+ RN+VCPCGS KKYK C G
Sbjct: 861 NAENQLDDGHSS---DQNHSPMVRDERKVGRNEVCPCGSGKKYKQCHG 905
>sp|Q3A245|SECA_PELCD Protein translocase subunit SecA OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=secA PE=3 SV=1
Length = 896
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 26 NEKKIPRNKVCPCGSKKKYKACCG 49
+EKK+ RN CPCGS KYK CCG
Sbjct: 872 DEKKVGRNDPCPCGSGLKYKKCCG 895
>sp|B3QN61|SECA_CHLP8 Protein translocase subunit SecA OS=Chlorobaculum parvum (strain NCIB
8327) GN=secA PE=3 SV=1
Length = 1031
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 27 EKKIPRNKVCPCGSKKKYKACCGT 50
E+K RN CPCGS KKYK CCGT
Sbjct: 1006 EQKPGRNDPCPCGSGKKYKNCCGT 1029
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,232,482
Number of Sequences: 539616
Number of extensions: 1257596
Number of successful extensions: 3590
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2813
Number of HSP's gapped (non-prelim): 796
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)