Query 046636
Match_columns 103
No_of_seqs 153 out of 629
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 04:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ozb_I Preprotein translocase 98.9 7.6E-10 2.6E-14 58.3 2.3 25 30-54 2-26 (27)
2 2i9w_A Hypothetical protein; c 98.8 7.4E-10 2.5E-14 83.4 2.2 24 28-51 160-183 (184)
3 1tf5_A Preprotein translocase 97.3 3.8E-05 1.3E-09 68.2 0.0 23 28-50 820-842 (844)
4 2jq5_A SEC-C motif; structural 95.6 0.0024 8.1E-08 45.1 0.4 17 36-52 3-19 (128)
5 2i9w_A Hypothetical protein; c 89.5 0.087 3E-06 39.4 0.6 19 34-52 7-34 (184)
6 1jy2_O Fibrinogen beta chain; 29.1 13 0.00046 22.9 0.3 8 95-102 16-23 (56)
7 1l8d_A DNA double-strand break 19.6 25 0.00085 22.6 0.2 10 33-42 47-57 (112)
8 1aqs_A Cu-MT, Cu-metallothione 9.2 1.1E+02 0.0038 18.2 1.0 20 30-49 30-51 (53)
9 4hsp_A Hypothetical protein; P 8.7 86 0.0029 22.4 0.4 8 95-103 80-87 (150)
10 1rju_V Metallothionein; Cu(I)- 8.5 1.2E+02 0.0042 16.7 0.9 14 35-48 4-17 (36)
No 1
>1ozb_I Preprotein translocase SECA subunit; zinc binding motif, protein-protein complex, protein transport; 2.80A {Haemophilus influenzae} SCOP: g.74.1.1
Probab=98.88 E-value=7.6e-10 Score=58.31 Aligned_cols=25 Identities=60% Similarity=1.175 Sum_probs=21.7
Q ss_pred CCCCCccccCCcchhhhhcCccccC
Q 046636 30 IPRNKVCPCGSKKKYKACCGTAAGR 54 (103)
Q Consensus 30 igRNd~C~CGSGKKyKkCh~~~~~~ 54 (103)
++||++||||||++||.||+..+.+
T Consensus 2 ~grn~~cpcgsgkk~k~c~~~~~~~ 26 (27)
T 1ozb_I 2 IGRNEPCPCGSGKKYKHCHGSRVAR 26 (27)
T ss_dssp CCTTSBCTTTCSSBGGGTTTCCCC-
T ss_pred CCCCCcccCCCchhhhhcccccccc
Confidence 5899999999999999999876644
No 2
>2i9w_A Hypothetical protein; cystatin-like fold, SEC-C motif fold, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.75A {Psychrobacter arcticus} SCOP: d.17.4.30 g.74.1.1 g.74.1.1
Probab=98.85 E-value=7.4e-10 Score=83.37 Aligned_cols=24 Identities=38% Similarity=0.984 Sum_probs=21.6
Q ss_pred CCCCCCCccccCCcchhhhhcCcc
Q 046636 28 KKIPRNKVCPCGSKKKYKACCGTA 51 (103)
Q Consensus 28 ~kigRNd~C~CGSGKKyKkCh~~~ 51 (103)
.++|||||||||||+|||+||+..
T Consensus 160 ~~~grndpCpCgSGkK~KkCcg~~ 183 (184)
T 2i9w_A 160 MSVTQKQPCICGSGEKFKRCCGMY 183 (184)
T ss_dssp CCCCTTSBCTTSCSSBGGGTGGGT
T ss_pred CCCCCCCcCcCCCCHHHHHhCcCc
Confidence 367999999999999999999853
No 3
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=97.28 E-value=3.8e-05 Score=68.19 Aligned_cols=23 Identities=61% Similarity=1.210 Sum_probs=0.0
Q ss_pred CCCCCCCccccCCcchhhhhcCc
Q 046636 28 KKIPRNKVCPCGSKKKYKACCGT 50 (103)
Q Consensus 28 ~kigRNd~C~CGSGKKyKkCh~~ 50 (103)
.++|||+|||||||++||.||+.
T Consensus 820 ~kvGRNdpcPcGSGkKyK~c~G~ 842 (844)
T 1tf5_A 820 VDIGRNAPCHCGSGKKYKNCCGR 842 (844)
T ss_dssp -----------------------
T ss_pred CCCCCCCCCCCCCCcchhcccCC
Confidence 56899999999999999999984
No 4
>2jq5_A SEC-C motif; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Rhodopseudomonas palustris}
Probab=95.61 E-value=0.0024 Score=45.13 Aligned_cols=17 Identities=53% Similarity=1.321 Sum_probs=15.4
Q ss_pred cccCCcchhhhhcCccc
Q 046636 36 CPCGSKKKYKACCGTAA 52 (103)
Q Consensus 36 C~CGSGKKyKkCh~~~~ 52 (103)
||||||+.|..||+...
T Consensus 3 CPCGSg~~Y~~CC~p~h 19 (128)
T 2jq5_A 3 CVCGSGKTYDDCCGPLL 19 (128)
T ss_dssp CSSSSSSCHHHHHHHHH
T ss_pred CCCCCCchHHHhChHHH
Confidence 99999999999998754
No 5
>2i9w_A Hypothetical protein; cystatin-like fold, SEC-C motif fold, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.75A {Psychrobacter arcticus} SCOP: d.17.4.30 g.74.1.1 g.74.1.1
Probab=89.47 E-value=0.087 Score=39.36 Aligned_cols=19 Identities=32% Similarity=0.947 Sum_probs=16.2
Q ss_pred CccccCCc---------chhhhhcCccc
Q 046636 34 KVCPCGSK---------KKYKACCGTAA 52 (103)
Q Consensus 34 d~C~CGSG---------KKyKkCh~~~~ 52 (103)
.+|||||| +.|..||+...
T Consensus 7 ~~CPCgsg~~~~~~~~~~~Y~~CC~p~h 34 (184)
T 2i9w_A 7 QTCPCQINPALNAVSTPLLYQDCCQPYH 34 (184)
T ss_dssp SBCGGGCCTTCCCSSCCCBGGGTTHHHH
T ss_pred CCCCCCCCCccccccccccHHHhhHHHH
Confidence 36999999 99999998643
No 6
>1jy2_O Fibrinogen beta chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_O
Probab=29.11 E-value=13 Score=22.89 Aligned_cols=8 Identities=63% Similarity=1.522 Sum_probs=7.0
Q ss_pred CCCCCccc
Q 046636 95 PPDMGALC 102 (103)
Q Consensus 95 ~pd~galc 102 (103)
-||||-||
T Consensus 16 ~~dlGVLC 23 (56)
T 1jy2_O 16 DPDLGVLC 23 (56)
T ss_dssp STTTCEEE
T ss_pred CcccCeeC
Confidence 39999998
No 7
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=19.57 E-value=25 Score=22.58 Aligned_cols=10 Identities=40% Similarity=1.135 Sum_probs=7.7
Q ss_pred CCccc-cCCcc
Q 046636 33 NKVCP-CGSKK 42 (103)
Q Consensus 33 Nd~C~-CGSGK 42 (103)
.++|| |||.-
T Consensus 47 g~~CPvCgs~l 57 (112)
T 1l8d_A 47 KGKCPVCGREL 57 (112)
T ss_dssp SEECTTTCCEE
T ss_pred CCCCCCCCCcC
Confidence 67899 99853
No 8
>1aqs_A Cu-MT, Cu-metallothionein; copper detoxification, metal-thiolate cluster; NMR {Saccharomyces cerevisiae} SCOP: g.46.1.1
Probab=9.22 E-value=1.1e+02 Score=18.15 Aligned_cols=20 Identities=40% Similarity=1.097 Sum_probs=8.1
Q ss_pred CCCCCccccCCcc--hhhhhcC
Q 046636 30 IPRNKVCPCGSKK--KYKACCG 49 (103)
Q Consensus 30 igRNd~C~CGSGK--KyKkCh~ 49 (103)
-..+|.||||..- .-|.||.
T Consensus 30 cnsddkcpcgnkseetkksccs 51 (53)
T 1aqs_A 30 CNSDDKCPCGNKSEETKKSCCS 51 (53)
T ss_dssp CSSSSSCCCCC-----------
T ss_pred CCCCCcCCCCCcchhhhhcccc
Confidence 3567889998543 4456654
No 9
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=8.74 E-value=86 Score=22.36 Aligned_cols=8 Identities=63% Similarity=1.136 Sum_probs=6.0
Q ss_pred CCCCCcccC
Q 046636 95 PPDMGALCI 103 (103)
Q Consensus 95 ~pd~galci 103 (103)
+|.+|| ||
T Consensus 80 VPy~GA-Ci 87 (150)
T 4hsp_A 80 VPYYGA-CI 87 (150)
T ss_dssp ESSTTB-TT
T ss_pred eCCCCc-Cc
Confidence 488888 65
No 10
>1rju_V Metallothionein; Cu(I)-thiolate, metal binding protein; 1.44A {Synthetic} SCOP: g.46.1.1 PDB: 1aoo_A 1aqq_A 1aqr_A 1fmy_A
Probab=8.54 E-value=1.2e+02 Score=16.71 Aligned_cols=14 Identities=43% Similarity=0.952 Sum_probs=9.9
Q ss_pred ccccCCcchhhhhc
Q 046636 35 VCPCGSKKKYKACC 48 (103)
Q Consensus 35 ~C~CGSGKKyKkCh 48 (103)
.|.|||-+.-..|.
T Consensus 4 qcqcgscknneqcq 17 (36)
T 1rju_V 4 QCQCGSCKNNEQCQ 17 (36)
T ss_dssp CCCSTTTTTCGGGT
T ss_pred ccccCCccChHHHh
Confidence 47788888766663
Done!