BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046637
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 130/289 (44%), Gaps = 46/289 (15%)
Query: 18 SFLERSAVVYRDRPSVV----YGDV-QYTWKETHQRCVKLASGLAHLGISPGDVVAALAP 72
FLER+A ++ R VV G+V + T+ E +QR +L GL LG+ GD VA L
Sbjct: 22 DFLERAAALF-GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGF 80
Query: 73 NVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEIL 132
N E +F VP GAVL T N R ++ +L H+E K++ D LLP+ + L
Sbjct: 81 NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL 140
Query: 133 SKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPI------ 186
+ + PE G L YE L +E DP+
Sbjct: 141 KTVQHFVVMDEKAPE------------GYLAYEEALG-----------EEADPVRVPERA 177
Query: 187 --ALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGL--MPTYLWCVPMFHCNGWCLT 242
+ YT+GTT PKGV+ SHR L+SLAA+L + L L VPMFH N WCL
Sbjct: 178 ACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLP 237
Query: 243 WAVAAQGGTNVCQ----RTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287
+A G V + E+FD VT G PTV +A+
Sbjct: 238 YAATLVGAKQVLPGPRLDPASLVELFDG---EGVTFTAGVPTVWLALAD 283
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 109/260 (41%), Gaps = 23/260 (8%)
Query: 37 DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNT 96
DV+ T+ + + + A L LGI+ GD VA L PN L +G GAV +NT
Sbjct: 41 DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINT 100
Query: 97 RHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVA 156
R + VS +L S +K++ I SA P++ + +P TV
Sbjct: 101 RLAAPEVSFILSDSGSKVV---------------IYGAPSA--PVIDAIRAQADPPGTVT 143
Query: 157 SSSGNLEYESLLAIGKLREVRRPKDEC---DPIALNYTSGTTSSPKGVICSHRGAYLNSL 213
G +SL + P EC D + + YTSGTT PKGV+ +H + +
Sbjct: 144 DWIGA---DSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAAS 200
Query: 214 AAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVT 273
+ A ++ L +PMFH A +G T + +A +++ I +V
Sbjct: 201 SWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVC 260
Query: 274 HFGGAPTVLNMIANAPPVFE 293
G P +LN + P E
Sbjct: 261 IGGAVPAILNFMRQVPEFAE 280
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 109/260 (41%), Gaps = 23/260 (8%)
Query: 37 DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNT 96
DV+ T+ + + + A L LGI+ GD VA L PN L +G GAV +NT
Sbjct: 27 DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINT 86
Query: 97 RHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVA 156
R + VS +L S +K++ I SA P++ + +P TV
Sbjct: 87 RLAAPEVSFILSDSGSKVV---------------IYGAPSA--PVIDAIRAQADPPGTVT 129
Query: 157 SSSGNLEYESLLAIGKLREVRRPKDEC---DPIALNYTSGTTSSPKGVICSHRGAYLNSL 213
G +SL + P EC D + + YTSGTT PKGV+ +H + +
Sbjct: 130 DWIGA---DSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAAS 186
Query: 214 AAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVT 273
+ A ++ L +PMFH A +G T + +A +++ I +V
Sbjct: 187 SWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVC 246
Query: 274 HFGGAPTVLNMIANAPPVFE 293
G P +LN + P E
Sbjct: 247 IGGAVPAILNFMRQVPEFAE 266
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 105/271 (38%), Gaps = 18/271 (6%)
Query: 22 RSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELH 81
R+A ++ DR + + V+ T ++ R +LASGL G+ GD VA L+ N M EL
Sbjct: 14 RNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELI 73
Query: 82 FGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPL 141
V + GA+L +N R ++ ++ +L ++ I G
Sbjct: 74 GAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAG-------------- 119
Query: 142 LVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPK-DECDPIALNYTSGTTSSPKG 200
++P G A G+ + + P+ D + +T+ P+G
Sbjct: 120 --VLPSLGGVKKAYAIGDGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRG 177
Query: 201 VICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNA 260
+ S + + + L +P+FH G L + GG +V +
Sbjct: 178 ALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDP 237
Query: 261 KEIFDNITRHKVTHFGG-APTVLNMIANAPP 290
+ +I HKVT AP + N++ A P
Sbjct: 238 AQAARDIEAHKVTVMAEFAPMLGNILDQAAP 268
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 20/239 (8%)
Query: 51 KLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHS 110
KLASG++ G+ G+ V PN + + A +N + S + +L S
Sbjct: 64 KLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDS 123
Query: 111 EAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVAS--SSGNLEYESLL 168
EA + V L + +L KT + +V G V++++ SG+ ++E++
Sbjct: 124 EATTLVVHSXLY---ENFKPVLEKTGVERVFVV-----GGEVNSLSEVXDSGSEDFENV- 174
Query: 169 AIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYL 228
+ E D + YT GTT PKGV +H N+L A+ + T +
Sbjct: 175 ---------KVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIV 225
Query: 229 WCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287
C P FH + L G V N + + +NI ++K T P LN++ N
Sbjct: 226 GCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVN 284
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 106/266 (39%), Gaps = 30/266 (11%)
Query: 18 SFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM 77
L A Y DR ++ G+ ++++E R +LA+G LGI D V PN+
Sbjct: 29 DLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF 88
Query: 78 YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILS---K 134
+E+ F + GA+ H S+ ++ +EA ++P A F+ S +
Sbjct: 89 FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAY-----IIPDAYSGFDYRSLARQ 143
Query: 135 TSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL--REVRRPKDECDPIALNYTS 192
+KLP L + GE E L + L V+ P+ + +A S
Sbjct: 144 VQSKLPTLKNIIVAGEA-------------EEFLPLEDLHTEPVKLPEVKSSDVAFLQLS 190
Query: 193 GTTSSPKGVICSHRGAYLNSLAAAL-FNEMGLMPTYLWCVPMFHCNGWCLT----WAVAA 247
G ++ +I Y+ SL ++ + YL +PM H + L+ V
Sbjct: 191 GGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAH--NYPLSSPGVLGVLY 248
Query: 248 QGGTNVCQRTVNAKEIFDNITRHKVT 273
GG V + + + F I R KVT
Sbjct: 249 AGGRVVLSPSPSPDDAFPLIEREKVT 274
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 91/209 (43%), Gaps = 30/209 (14%)
Query: 36 GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLN 95
GDV YT+ + ++ASGL +GI GDV+ P+ P G GA++ N
Sbjct: 47 GDV-YTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAAN 105
Query: 96 TRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTV 155
A ++ + S AK++ I Q + K A+ E V V
Sbjct: 106 PFSTPAELAKHAKASRAKLL--------ITQACYYEKVKDFAR--------ESDVKVMCV 149
Query: 156 ASS-SGNLEYESLLAIGKLREVRRPKDECDP---IALNYTSGTTSSPKGVICSHRGAYLN 211
S+ G L + L + E P+ + P +AL Y+SGTT PKGV+ +H+G +
Sbjct: 150 DSAPDGCLHFSELT---QADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKG-LIT 205
Query: 212 SLAAALFNEMGLM----PTYLWCV-PMFH 235
S+A + + + + CV PMFH
Sbjct: 206 SVAQQVDGDNPNLYFHSEDVILCVLPMFH 234
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 105/266 (39%), Gaps = 30/266 (11%)
Query: 18 SFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM 77
L A Y DR ++ G+ ++++E R +LA+G LGI D V PN+
Sbjct: 29 DLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF 88
Query: 78 YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILS---K 134
+E+ F + GA+ H S+ ++ +EA ++P A F+ S +
Sbjct: 89 FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAY-----IIPDAYSGFDYRSLARQ 143
Query: 135 TSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL--REVRRPKDECDPIALNYTS 192
+KLP L + GE E L + L V+ P+ + +A S
Sbjct: 144 VQSKLPTLKNIIVAGEA-------------EEFLPLEDLHTEPVKLPEVKSSDVAFLQLS 190
Query: 193 GTTSSPKGVICSHRGAYLNSLAAAL-FNEMGLMPTYLWCVPMFHCNGWCLT----WAVAA 247
G ++ +I Y+ SL ++ + YL +P H + L+ V
Sbjct: 191 GGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPXAH--NYPLSSPGVLGVLY 248
Query: 248 QGGTNVCQRTVNAKEIFDNITRHKVT 273
GG V + + + F I R KVT
Sbjct: 249 AGGRVVLSPSPSPDDAFPLIEREKVT 274
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 102/255 (40%), Gaps = 41/255 (16%)
Query: 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN----VPAMYELHFGVPMAGAVLCT 93
++ T E R +A+ L G+ P VA +APN V A+ LH GAV
Sbjct: 28 LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALH----RLGAVPAL 83
Query: 94 LNTRHDSAMVSVLLRHSE--AKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEP 151
LN R SA ++ L++ E A +I V Q +A F+ S + A++ L + GEP
Sbjct: 84 LNPRLKSAELAELIKRGEMTAAVIAVGRQ---VADAIFQ--SGSGARIIFLGDLVRDGEP 138
Query: 152 VSTVASSSGNLEYESLLAIGKLREVRRPKDE-CDPIALNYTSGTTSSPKGVICSHRGAYL 210
S + P+ E P + YTSGTT PK I R A
Sbjct: 139 YSYGPP------------------IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAA-- 178
Query: 211 NSLAAALFNEMGLM----PTYLWCVPMFHCNG-WCLTWAVAAQGGTNVCQRTVNAKEIFD 265
S + ++GL L +P++H G + + A A GT V +
Sbjct: 179 ESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQ 238
Query: 266 NITRHKVTHFGGAPT 280
+ + +VT PT
Sbjct: 239 LVQQEQVTSLFATPT 253
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 102/255 (40%), Gaps = 41/255 (16%)
Query: 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN----VPAMYELHFGVPMAGAVLCT 93
++ T E R +A+ L G+ P VA +APN V A+ LH GAV
Sbjct: 28 LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALH----RLGAVPAL 83
Query: 94 LNTRHDSAMVSVLLRHSE--AKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEP 151
LN R SA ++ L++ E A +I V Q +A F+ S + A++ L + GEP
Sbjct: 84 LNPRLKSAELAELIKRGEMTAAVIAVGRQ---VADAIFQ--SGSGARIIFLGDLVRDGEP 138
Query: 152 VSTVASSSGNLEYESLLAIGKLREVRRPKDE-CDPIALNYTSGTTSSPKGVICSHRGAYL 210
S + P+ E P + YTSGTT PK I R A
Sbjct: 139 YSYGPP------------------IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAA-- 178
Query: 211 NSLAAALFNEMGLM----PTYLWCVPMFHCNG-WCLTWAVAAQGGTNVCQRTVNAKEIFD 265
S + ++GL L +P++H G + + A A GT V +
Sbjct: 179 ESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQ 238
Query: 266 NITRHKVTHFGGAPT 280
+ + +VT PT
Sbjct: 239 LVQQEQVTSLFATPT 253
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 102/255 (40%), Gaps = 41/255 (16%)
Query: 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN----VPAMYELHFGVPMAGAVLCT 93
++ T E R +A+ L G+ P VA +APN V A+ LH GAV
Sbjct: 28 LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALH----RLGAVPAL 83
Query: 94 LNTRHDSAMVSVLLRHSE--AKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEP 151
LN R SA ++ L++ E A +I V Q +A F+ S + A++ L + GEP
Sbjct: 84 LNPRLKSAELAELIKRGEMTAAVIAVGRQ---VADAIFQ--SGSGARIIFLGDLVRDGEP 138
Query: 152 VSTVASSSGNLEYESLLAIGKLREVRRPKDE-CDPIALNYTSGTTSSPKGVICSHRGAYL 210
S + P+ E P + YTSGTT PK I R A
Sbjct: 139 YSYGPP------------------IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAA-- 178
Query: 211 NSLAAALFNEMGLM----PTYLWCVPMFHCNG-WCLTWAVAAQGGTNVCQRTVNAKEIFD 265
S + ++GL L +P++H G + + A A GT V +
Sbjct: 179 ESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQ 238
Query: 266 NITRHKVTHFGGAPT 280
+ + +VT PT
Sbjct: 239 LVQQEQVTSLFATPT 253
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 102/255 (40%), Gaps = 41/255 (16%)
Query: 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN----VPAMYELHFGVPMAGAVLCT 93
++ T E R +A+ L G+ P VA +APN V A+ LH GAV
Sbjct: 28 LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALH----RLGAVPAL 83
Query: 94 LNTRHDSAMVSVLLRHSE--AKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEP 151
LN R SA ++ L++ E A +I V Q +A F+ S + A++ L + GEP
Sbjct: 84 LNPRLKSAELAELIKRGEMTAAVIAVGRQ---VADAIFQ--SGSGARIIFLGDLVRDGEP 138
Query: 152 VSTVASSSGNLEYESLLAIGKLREVRRPKDE-CDPIALNYTSGTTSSPKGVICSHRGAYL 210
S + P+ E P + YTSGTT PK I R A
Sbjct: 139 YSYGPP------------------IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAA-- 178
Query: 211 NSLAAALFNEMGLM----PTYLWCVPMFHCNG-WCLTWAVAAQGGTNVCQRTVNAKEIFD 265
S + ++GL L +P++H G + + A A GT V +
Sbjct: 179 ESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQ 238
Query: 266 NITRHKVTHFGGAPT 280
+ + +VT PT
Sbjct: 239 LVQQEQVTSLFATPT 253
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 102/255 (40%), Gaps = 41/255 (16%)
Query: 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN----VPAMYELHFGVPMAGAVLCT 93
++ T E R +A+ L G+ P VA +APN V A+ LH GAV
Sbjct: 28 LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALH----RLGAVPAL 83
Query: 94 LNTRHDSAMVSVLLRHSE--AKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEP 151
LN R SA ++ L++ E A +I V Q +A F+ S + A++ L + GEP
Sbjct: 84 LNPRLKSAELAELIKRGEMTAAVIAVGRQ---VADAIFQ--SGSGARIIFLGDLVRDGEP 138
Query: 152 VSTVASSSGNLEYESLLAIGKLREVRRPKDE-CDPIALNYTSGTTSSPKGVICSHRGAYL 210
S + P+ E P + YTSGTT PK I R A
Sbjct: 139 YSYGPP------------------IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAA-- 178
Query: 211 NSLAAALFNEMGLM----PTYLWCVPMFHCNG-WCLTWAVAAQGGTNVCQRTVNAKEIFD 265
S + ++GL L +P++H G + + A A GT V +
Sbjct: 179 ESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQ 238
Query: 266 NITRHKVTHFGGAPT 280
+ + +VT PT
Sbjct: 239 LVQQEQVTSLFATPT 253
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 99/253 (39%), Gaps = 37/253 (14%)
Query: 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN----VPAMYELHFGVPMAGAVLCT 93
++ T E R +A+ L G+ P VA +APN V A+ LH GAV
Sbjct: 28 LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALH----RLGAVPAL 83
Query: 94 LNTRHDSAMVSVLLRHSE--AKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEP 151
LN R SA ++ L++ E A +I V Q +A F+ S + A++ L + GEP
Sbjct: 84 LNPRLKSAELAELIKRGEXTAAVIAVGRQ---VADAIFQ--SGSGARIIFLGDLVRDGEP 138
Query: 152 VSTVASSSGNLEYESLLAIGKLREVRRPKDE-CDPIALNYTSGTTSSPKGVICSHRGAYL 210
S + P+ E P + YTSGTT PK I R A
Sbjct: 139 YSYGPP------------------IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAES 180
Query: 211 NSL--AAALFNEMGLMPTYLWCVPMFHCNG-WCLTWAVAAQGGTNVCQRTVNAKEIFDNI 267
L + + G L P++H G + + A A GT V + +
Sbjct: 181 RVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLV 240
Query: 268 TRHKVTHFGGAPT 280
+ +VT PT
Sbjct: 241 QQEQVTSLFATPT 253
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 27/239 (11%)
Query: 11 YVP--LTPISFLERSAVVYRDRPSVVYGDVQ--YTWKETHQRCVKLASGLAHLGISPGDV 66
Y+P L+ ++ ++ + +P ++ G YT+ + H ++A+ LG++ DV
Sbjct: 56 YIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDV 115
Query: 67 VAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQ 126
V L PN P GA N A ++ + S K+I + + +
Sbjct: 116 VMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYV---- 171
Query: 127 GAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLL-----AIGKLREVRRPKD 181
+ L +V+V C + +V G L + L A + V D
Sbjct: 172 DKIKPLQNDDG----VVIV--CIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPD 225
Query: 182 ECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLM----PTYLWCV-PMFH 235
D +AL Y+SGTT PKGV+ +H+G + S+A + E + + CV PMFH
Sbjct: 226 --DVVALPYSSGTTGLPKGVMLTHKG-LVTSVAQQVDGENPNLYFHSDDVILCVLPMFH 281
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 94/252 (37%), Gaps = 15/252 (5%)
Query: 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDS 100
T+ E +R + AS L LG+ P + + + + A+ G AG V NT
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 101 AMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSG 160
A +L HS A+ + L+ A E S L+V P EP
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQNVTQALE--SAEHDGCQLIVSQPRESEPRLAPL---- 163
Query: 161 NLEYESLLAIGKLREVRRPKDECDPIAL-NYTSGTTSSPKGVICSHRGAYLNS-LAAALF 218
+E L+ CD IA Y+SG+T PKG + +H Y + L A
Sbjct: 164 ---FEELIDAAAPAAKAAATG-CDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPI 219
Query: 219 NEMGLMPTYLWCVPMFHCNGW--CLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFG 276
+ +F G LT+ ++ + A IF + H+ T F
Sbjct: 220 LGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFY 279
Query: 277 GAPTVL-NMIAN 287
G PT+ NM+ +
Sbjct: 280 GVPTLYANMLVS 291
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 114/305 (37%), Gaps = 25/305 (8%)
Query: 1 MEGMIRCSANYVPLTPISFLERSAVVYR-DRPSVVYGDVQYTWKETHQRCVKLASGLAH- 58
+ G + N V + + A+++ D P Y T+KE + ++A L +
Sbjct: 77 LNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGY---SITYKELLEEVCQVAQVLTYS 133
Query: 59 LGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118
+G+ GD VA P VP + GA+ + S + + ++K++
Sbjct: 134 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 193
Query: 119 YQ------LLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGK 172
+ ++ + + L +T +LV V+ A +L++ + K
Sbjct: 194 DESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPR--DLDWATEKKKYK 251
Query: 173 LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVP 232
P D DP+ L YTSG+T +PKGV S G L +L + +
Sbjct: 252 TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAG 311
Query: 233 MFHCNGWCLTWAVAAQG------GTNVCQRT---VNAKEIFDNITRHKVTHFGGAPTVLN 283
GW G T V + T N +D I HKVT F APT L
Sbjct: 312 DI---GWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALR 368
Query: 284 MIANA 288
++ A
Sbjct: 369 LLKRA 373
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 93/253 (36%), Gaps = 22/253 (8%)
Query: 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH 98
+ ++ E R ++A+ L G+ GD VAA L+ AG V LNT +
Sbjct: 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAY 87
Query: 99 DSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVA-S 157
+ + +E KI+ D S + + + + G V T+
Sbjct: 88 TLHELDYFITDAEPKIVVCD----------------PSKRDGIAAIAAKVGATVETLGPD 131
Query: 158 SSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL 217
G+L + A + R D D A+ YTSGTT KG SH NSL
Sbjct: 132 GRGSLTDAAAGASEAFATIDRGAD--DLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVD 189
Query: 218 FNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQG-GTNVCQRTVNAKEIFDNITRHKVTHFG 276
+ + +P++H +G + V G+ + + +I D R V
Sbjct: 190 YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXARATV--LX 247
Query: 277 GAPTVLNMIANAP 289
G PT + +P
Sbjct: 248 GVPTFYTRLLQSP 260
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 93/238 (39%), Gaps = 13/238 (5%)
Query: 2 EGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGI 61
+G + +AN + +R+A+++ + + Y +E H+ + A+ L LGI
Sbjct: 72 DGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISY--RELHRDVCRFANTLLDLGI 129
Query: 62 SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL-NTRHDSAMVSVLLRHSEAKIIFVDYQ 120
GDVVA P VP GAV + A+ ++ S +I D
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEG 189
Query: 121 L-----LPIAQGAFEILSKTS-AKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR 174
+ +P+ + + L + + ++++ G + +L + L+
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW--QEGRDLWWRDLIEKASPE 247
Query: 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYL-WCV 231
+ DP+ + YTSG+T PKGV+ + G YL A P + WC
Sbjct: 248 HQPEAMNAEDPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCT 304
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 13/238 (5%)
Query: 2 EGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGI 61
+G + +AN + +R+A+++ + + Y +E H+ + A+ L LGI
Sbjct: 72 DGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISY--RELHRDVCRFANTLLDLGI 129
Query: 62 SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ- 120
GDVVA P VP GAV + V+ + S ++++ +
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 121 -----LLPIAQGAFEILSKTS-AKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR 174
+P+ + + L + + ++++ G + +L + L+
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW--QEGRDLWWRDLIEKASPE 247
Query: 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYL-WCV 231
+ DP+ + YTSG+T PKGV+ + G YL A P + WC
Sbjct: 248 HQPEAMNAEDPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCT 304
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 13/238 (5%)
Query: 2 EGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGI 61
+G + +AN + +R+A+++ + + Y +E H+ + A+ L LGI
Sbjct: 72 DGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISY--RELHRDVCRFANTLLDLGI 129
Query: 62 SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ- 120
GDVVA P VP GAV + V+ + S ++++ +
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 121 -----LLPIAQGAFEILSKTS-AKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR 174
+P+ + + L + + ++++ G + +L + L+
Sbjct: 190 VRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW--QEGRDLWWRDLIEKASPE 247
Query: 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYL-WCV 231
+ DP+ + YTSG+T PKGV+ + G YL A P + WC
Sbjct: 248 HQPEAMNAEDPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCT 304
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 13/238 (5%)
Query: 2 EGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGI 61
+G + +AN + +R+A+++ + + Y +E H+ + A+ L LGI
Sbjct: 72 DGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISY--RELHRDVCRFANTLLDLGI 129
Query: 62 SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ- 120
GDVVA P VP GAV + V+ + S ++++ +
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 121 -----LLPIAQGAFEILSKTS-AKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR 174
+P+ + + L + + ++++ G + +L + L+
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW--QEGRDLWWRDLIEKASPE 247
Query: 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYL-WCV 231
+ DP+ + YTSG+T PKGV+ + G YL A P + WC
Sbjct: 248 HQPEAMNAEDPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCT 304
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 13/238 (5%)
Query: 2 EGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGI 61
+G + +AN + +R+A+++ + + Y +E H+ + A+ L LGI
Sbjct: 72 DGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISY--RELHRDVCRFANTLLDLGI 129
Query: 62 SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ- 120
GDVVA P VP GAV + V+ + S ++++ +
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 121 -----LLPIAQGAFEILSKTS-AKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR 174
+P+ + + L + + ++++ G + +L + L+
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW--QEGRDLWWRDLIEKASPE 247
Query: 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYL-WCV 231
+ DP+ + YTSG+T PKGV+ + G YL A P + WC
Sbjct: 248 HQPEAMNAEDPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCT 304
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 13/238 (5%)
Query: 2 EGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGI 61
+G + +AN + +R+A+++ + + Y +E H+ + A+ L LGI
Sbjct: 72 DGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISY--RELHRDVCRFANTLLDLGI 129
Query: 62 SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ- 120
GDVVA P VP GAV + V+ + S ++++ +
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 121 -----LLPIAQGAFEILSKTS-AKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR 174
+P+ + + L + + ++++ G + +L + L+
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW--QEGRDLWWRDLIEKASPE 247
Query: 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYL-WCV 231
+ DP+ + YTSG+T PKGV+ + G YL A P + WC
Sbjct: 248 HQPEAMNAEDPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCT 304
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 13/238 (5%)
Query: 2 EGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGI 61
+G + +AN + +R+A+++ + + Y +E H+ + A+ L LGI
Sbjct: 72 DGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISY--RELHRDVCRFANTLLDLGI 129
Query: 62 SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ- 120
GDVVA P VP GAV + V+ + S ++++ +
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 121 -----LLPIAQGAFEILSKTS-AKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR 174
+P+ + + L + + ++++ G + +L + L+
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW--QEGRDLWWRDLIEKASPE 247
Query: 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYL-WCV 231
+ DP+ + YTSG+T PKGV+ + G YL A P + WC
Sbjct: 248 HQPEAMNAEDPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCT 304
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 82/209 (39%), Gaps = 26/209 (12%)
Query: 86 MAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLV 145
+A + +NTR ++ +R + ++IF LP+ F+I+S +
Sbjct: 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFC---TLPLELRGFQIVSLDDIEF------ 120
Query: 146 PECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKD----------ECDPIA-LNYTSGT 194
G ++T +G L+ + E PK+ D IA + +TSGT
Sbjct: 121 --AGRDITT----NGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGT 174
Query: 195 TSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVC 254
T K V + R Y +++ +L +P++H +G + +G T
Sbjct: 175 TGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRI 234
Query: 255 QRTVNAKEIFDNITRHKVTHFGGAPTVLN 283
NA++I I ++TH P LN
Sbjct: 235 VDKFNAEQILTMIKNERITHISLVPQTLN 263
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 109/288 (37%), Gaps = 50/288 (17%)
Query: 18 SFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM 77
E A D ++++ + T+ ++R +LA L LG++PG +V
Sbjct: 79 ELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGV-------- 130
Query: 78 YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSA 137
L G M A+L L M+ D Q P+ + A LS
Sbjct: 131 -HLERGFDMVVALLAVLKAGGGYTML--------------DPQF-PVERLA---LSLEDT 171
Query: 138 KLPLLVLVPECGEPVSTVASSSGNLEYESLLA----IGKLREVRRPKDECDPIALNYTSG 193
PLLV P+S + + L E A G L P+D + +TSG
Sbjct: 172 GAPLLV----TSRPLSGRLTGTTTLYVEDEAASDAPAGNLATGVGPEDVA---CVMFTSG 224
Query: 194 TTSSPKGVICSHR---GAYLNSLAAALFNEMGLMPTYLWCVPM-FHCNGWCLTWAVAAQG 249
+T PKGV+ HR G YL A G +L C P+ + G L A+ G
Sbjct: 225 STGRPKGVMSPHRALTGTYLGQDYAGF----GPDEVFLQCSPVSWDAFGLELFGALLF-G 279
Query: 250 GTNVCQRTVNAK--EIFDNITRHKVTHFGGAPTVLN-MIANAPPVFEN 294
V Q N EI + + RH VT + ++ N ++ P FE
Sbjct: 280 ARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEG 327
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 109/288 (37%), Gaps = 50/288 (17%)
Query: 18 SFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM 77
E A D ++++ + T+ ++R +LA L LG++PG +V
Sbjct: 79 ELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGV-------- 130
Query: 78 YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSA 137
L G M A+L L M+ D Q P+ + A LS
Sbjct: 131 -HLERGFDMVVALLAVLKAGGGYTML--------------DPQF-PVERLA---LSLEDT 171
Query: 138 KLPLLVLVPECGEPVSTVASSSGNLEYESLLA----IGKLREVRRPKDECDPIALNYTSG 193
PLLV P+S + + L E A G L P+D + +TSG
Sbjct: 172 GAPLLV----TSRPLSGRLTGTTTLYVEDEAASDAPAGNLATGVGPEDVA---CVMFTSG 224
Query: 194 TTSSPKGVICSHR---GAYLNSLAAALFNEMGLMPTYLWCVPM-FHCNGWCLTWAVAAQG 249
+T PKGV+ HR G YL A G +L C P+ + G L A+ G
Sbjct: 225 STGRPKGVMSPHRALTGTYLGQDYAGF----GPDEVFLQCSPVSWDAFGLELFGALLF-G 279
Query: 250 GTNVCQRTVNAK--EIFDNITRHKVTHFGGAPTVLN-MIANAPPVFEN 294
V Q N EI + + RH VT + ++ N ++ P FE
Sbjct: 280 ARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEG 327
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 12/176 (6%)
Query: 32 SVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91
+++ G+ Q ++ E + LA+ LA G+ GD PNV Y + F + AG V+
Sbjct: 48 AIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV 107
Query: 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTS--AKLPLLVLVPECG 149
H ++ ++ + K++ I E+ S L + L PE
Sbjct: 108 LNALYSHRQYELNAFIKQIQPKLL--------IGSRQHEVFSNNQFIDSLHDVNLSPEII 159
Query: 150 EPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSH 205
++ A+ G L++ A + P DE L + G+T +PK + +H
Sbjct: 160 LMLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQL--SGGSTGTPKLIPRTH 213
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 66/167 (39%), Gaps = 8/167 (4%)
Query: 126 QGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDP 185
G E+ S P LVL P P + + + G LE + + D+ DP
Sbjct: 102 SGDKELAHILSDSAPSLVLAP----PDAELPPALGALERVDVDVRARGAVPEDGADDGDP 157
Query: 186 IALNYTSGTTSSPKGVICSHR--GAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTW 243
+ YTSGTT PKG + R L++LA A + G + +P+FH +G L
Sbjct: 158 ALVVYTSGTTGPPKGAVIPRRALATTLDALADA-WQWTG-EDVLVQGLPLFHVHGLVLGI 215
Query: 244 AVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290
+ G +V + E T G PT+ + IA P
Sbjct: 216 LGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMYHRIAETLP 262
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 71/197 (36%), Gaps = 39/197 (19%)
Query: 16 PISFLERSAVVYR-DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNV 74
P+++ + AV D P++ Y +++E + ++A L G G VVA
Sbjct: 465 PLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRS 524
Query: 75 PAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQL------LPIAQGA 128
+ GV AGA ++ + +S +L S A + ++ LP
Sbjct: 525 LELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTT 584
Query: 129 FEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIAL 188
I +T + + +P + + D DP +
Sbjct: 585 LFIDDQTRFE-------EQASDPATAI-------------------------DPNDPAYI 612
Query: 189 NYTSGTTSSPKGVICSH 205
YTSGTT PKG I +H
Sbjct: 613 MYTSGTTGKPKGNITTH 629
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 78/215 (36%), Gaps = 35/215 (16%)
Query: 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTR 97
+ TW + ++R + +A L+ G S GD V AP G AG + L+
Sbjct: 57 ITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVP 115
Query: 98 H----DSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVS 153
D SVL S I+ + + Q + + P ++ V
Sbjct: 116 QGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ---HVARRPGESPPSIIEV-------- 164
Query: 154 TVASSSGNLEYESLLAIGKLREVRRPKDECDPIA-LNYTSGTTSSPKGVICSHRGAYLN- 211
LL + +DE A L YTSG+T +P GV+ SH+ +N
Sbjct: 165 ------------DLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVXSHQNVRVNF 212
Query: 212 -SLAAALFNEMGLMP----TYLWCVPMFHCNGWCL 241
L + F + +P + +P +H G +
Sbjct: 213 EQLXSGYFADTDGIPPPNSALVSWLPFYHDXGLVI 247
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 85/250 (34%), Gaps = 20/250 (8%)
Query: 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDS 100
++ E R ++A+ L G+ GD VAA L+ AG V LNT +
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 101 AMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSG 160
+ + +E I+ D + T L G
Sbjct: 90 HELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLG---------------PDGRG 134
Query: 161 NLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE 220
+L + A + R D D A+ YTSGTT G + SH NSL +
Sbjct: 135 SLTDAAAGASEAFATIDRGAD--DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWR 192
Query: 221 MGLMPTYLWCVPMFHCNGWCLTWAVAAQG-GTNVCQRTVNAKEIFDNITRHKVTHFGGAP 279
+ +P++H +G + V G+ + + I D + R V G P
Sbjct: 193 FTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATV--LMGVP 250
Query: 280 TVLNMIANAP 289
T + +P
Sbjct: 251 TFYTRLLQSP 260
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 85/250 (34%), Gaps = 20/250 (8%)
Query: 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDS 100
++ E R ++A+ L G+ GD VAA L+ AG V LNT +
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 101 AMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSG 160
+ + +E I+ D + T L G
Sbjct: 90 HELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLG---------------PDGRG 134
Query: 161 NLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE 220
+L + A + R D D A+ YTSGTT G + SH NSL +
Sbjct: 135 SLTDAAAGASEAFATIDRGAD--DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWR 192
Query: 221 MGLMPTYLWCVPMFHCNGWCLTWAVAAQG-GTNVCQRTVNAKEIFDNITRHKVTHFGGAP 279
+ +P++H +G + V G+ + + I D + R V G P
Sbjct: 193 FTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATV--LMGVP 250
Query: 280 TVLNMIANAP 289
T + +P
Sbjct: 251 TFYTRLLQSP 260
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 85/250 (34%), Gaps = 20/250 (8%)
Query: 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDS 100
++ E R ++A+ L G+ GD VAA L+ AG V LNT +
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 101 AMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSG 160
+ + +E I+ D + T L G
Sbjct: 90 HELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLG---------------PDGRG 134
Query: 161 NLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE 220
+L + A + R D D A+ YTSGTT G + SH NSL +
Sbjct: 135 SLTDAAAGASEAFATIDRGAD--DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWR 192
Query: 221 MGLMPTYLWCVPMFHCNGWCLTWAVAAQG-GTNVCQRTVNAKEIFDNITRHKVTHFGGAP 279
+ +P++H +G + V G+ + + I D + R V G P
Sbjct: 193 FTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATV--LMGVP 250
Query: 280 TVLNMIANAP 289
T + +P
Sbjct: 251 TFYTRLLQSP 260
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 64/181 (35%), Gaps = 36/181 (19%)
Query: 32 SVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91
++V + Q T+ E + + +LA GI +V + ++ V AG
Sbjct: 57 AIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAY 116
Query: 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQ-----GAFEILSKTSAKLPLLVLVP 146
++ + + +L S+A+++ L+ + G EI + + K+
Sbjct: 117 VPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKI------- 169
Query: 147 ECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHR 206
NL P D + YTSGTT +PKG + H+
Sbjct: 170 ----------REGTNLHV--------------PSKSTDLAYVIYTSGTTGNPKGTMLEHK 205
Query: 207 G 207
G
Sbjct: 206 G 206
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 80/224 (35%), Gaps = 35/224 (15%)
Query: 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTR 97
+ TW + ++R + +A L+ G S GD V AP G AG + L+
Sbjct: 57 ITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVP 115
Query: 98 H----DSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVS 153
D SVL S I+ + + Q + + P ++ V
Sbjct: 116 QGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ---HVARRPGESPPSIIEV-------- 164
Query: 154 TVASSSGNLEYESLLAIGKLREVRRPKDECDPIA-LNYTSGTTSSPKGVICSHRGAYLN- 211
LL + +DE A L YTSG+T +P GV+ SH+ +N
Sbjct: 165 ------------DLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNF 212
Query: 212 -SLAAALFNEMGLMP----TYLWCVPMFHCNGWCLTWAVAAQGG 250
L + F + +P + +P +H G + GG
Sbjct: 213 EQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGG 256
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 42/132 (31%)
Query: 188 LNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCV---PMFHCNGWC---- 240
L YTSG+T P+GVI +HR N L A + + L P CV P +H G
Sbjct: 180 LQYTSGSTRFPRGVIITHREVXAN-LRAISHDGIKLRPGDR-CVSWLPFYHDXGLVGFLL 237
Query: 241 ---------------------LTW-----------AVAAQGGTNVCQRTVNAKEIFD-NI 267
L W +VA G +CQR VN K++ + ++
Sbjct: 238 TPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDL 297
Query: 268 TRHKVTHFGGAP 279
+ +V G P
Sbjct: 298 SCWRVAGIGAEP 309
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 176 VRRPKDECDPIA-LNYTSGTTSSPKGVICSHRG 207
V RP D IA +N++SGTT PK + C+H G
Sbjct: 156 VARPCFAADQIAYINFSSGTTGRPKAIACTHAG 188
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 190 YTSGTTSSPKGVICSHRG--AYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWA-VA 246
+TSGTT PKGV SH ++ N + ++ P L P + + + WA
Sbjct: 152 FTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQML-AQPPYSFDLSVMYWAPTL 210
Query: 247 AQGGTNVC---QRTVNAKEIFDNITRHKVTHFGGAPTVLNM 284
A GGT + + K++F I + V + P+ +M
Sbjct: 211 ALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADM 251
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 184 DPIALNYTSGTTSSPKGVICSHRGAYLN 211
D L YTSG+T PKGV SH N
Sbjct: 168 DIAFLQYTSGSTXHPKGVXVSHHNLLDN 195
>pdb|3L6P|A Chain A, Crystal Structure Of Dengue Virus 1 Ns2bNS3 PROTEASE
Length = 236
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 17/91 (18%)
Query: 148 CGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSP--------- 198
GE V +A G A G + P+ E IAL++ GT+ SP
Sbjct: 141 AGEEVQVIAVEPGKNPKNVQTAPGTFK---TPEGEVGAIALDFKPGTSGSPIVNREGKIV 197
Query: 199 ----KGVICSHRGAYLNSLAAALFNEMGLMP 225
GV+ + G Y++++A A ++ G +P
Sbjct: 198 GLYGNGVVTT-SGTYVSAIAQAKASQEGPLP 227
>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae
pdb|1EE9|A Chain A, Crystal Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae Complexed With Nad
Length = 320
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 262 EIFDNITRHKVTHFGGAPTVLNMIANAPP 290
EI +N+ +K TH G P ++ +AN P
Sbjct: 20 EIINNVEEYKKTHNGQGPLLVGFLANNDP 48
>pdb|3LKW|A Chain A, Crystal Structure Of Dengue Virus 1 Ns2bNS3 PROTEASE
ACTIVE Site Mutant
Length = 236
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 148 CGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSP--------- 198
GE V +A G A G + P+ E IAL++ GT SP
Sbjct: 141 AGEEVQVIAVEPGKNPKNVQTAPGTFK---TPEGEVGAIALDFKPGTAGSPIVNREGKIV 197
Query: 199 ----KGVICSHRGAYLNSLAAALFNEMGLMP 225
GV+ + G Y++++A A ++ G +P
Sbjct: 198 GLYGNGVVTT-SGTYVSAIAQAKASQEGPLP 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,041,593
Number of Sequences: 62578
Number of extensions: 367632
Number of successful extensions: 836
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 767
Number of HSP's gapped (non-prelim): 51
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)