Query 046637
Match_columns 301
No_of_seqs 137 out of 1265
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 02:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1177 Long chain fatty acid 100.0 1.4E-45 2.9E-50 309.7 27.5 288 5-299 41-352 (596)
2 PTZ00342 acyl-CoA synthetase; 100.0 1.6E-41 3.4E-46 317.3 29.6 275 8-287 55-409 (746)
3 COG0318 CaiC Acyl-CoA syntheta 100.0 6.2E-41 1.4E-45 305.7 32.3 279 8-298 5-291 (534)
4 PLN02736 long-chain acyl-CoA s 100.0 8.7E-41 1.9E-45 312.1 30.3 274 10-288 40-325 (651)
5 PLN02614 long-chain acyl-CoA s 100.0 1.8E-40 4E-45 309.7 30.5 271 13-287 44-331 (666)
6 KOG1176 Acyl-CoA synthetase [L 100.0 1.7E-40 3.7E-45 295.4 28.4 290 2-299 4-301 (537)
7 PLN02861 long-chain-fatty-acid 100.0 3.1E-40 6.8E-45 308.2 30.0 271 13-287 42-328 (660)
8 PRK07788 acyl-CoA synthetase; 100.0 1.5E-39 3.2E-44 298.8 30.0 267 14-291 49-315 (549)
9 PLN02860 o-succinylbenzoate-Co 100.0 9.5E-40 2.1E-44 300.7 28.2 275 9-289 2-278 (563)
10 PLN03102 acyl-activating enzym 100.0 1.5E-38 3.1E-43 293.5 32.6 282 7-291 7-294 (579)
11 COG0365 Acs Acyl-coenzyme A sy 100.0 4.5E-39 9.7E-44 284.9 27.2 265 19-299 14-292 (528)
12 PRK08279 long-chain-acyl-CoA s 100.0 2E-38 4.4E-43 294.1 31.2 275 6-292 29-309 (600)
13 PLN02387 long-chain-fatty-acid 100.0 1E-38 2.2E-43 299.3 28.3 272 13-288 57-364 (696)
14 PRK06187 long-chain-fatty-acid 100.0 7.5E-38 1.6E-42 285.6 33.3 280 10-297 2-281 (521)
15 KOG1256 Long-chain acyl-CoA sy 100.0 4.3E-39 9.3E-44 285.7 23.7 275 10-287 71-364 (691)
16 PRK13295 cyclohexanecarboxylat 100.0 6.8E-38 1.5E-42 287.6 32.6 275 9-298 19-313 (547)
17 PRK07656 long-chain-fatty-acid 100.0 1.1E-37 2.3E-42 284.2 33.0 278 12-297 3-281 (513)
18 COG1022 FAA1 Long-chain acyl-C 100.0 2E-38 4.4E-43 284.5 27.5 268 13-287 15-295 (613)
19 PRK08314 long-chain-fatty-acid 100.0 1E-37 2.2E-42 286.5 32.8 285 7-297 3-305 (546)
20 KOG1179 Very long-chain acyl-C 100.0 1.3E-38 2.7E-43 272.9 24.8 275 11-295 74-355 (649)
21 PLN03052 acetate--CoA ligase; 100.0 5.8E-38 1.2E-42 294.6 31.3 278 14-298 174-472 (728)
22 PLN02654 acetate-CoA ligase 100.0 1E-37 2.2E-42 291.7 31.8 274 17-290 91-388 (666)
23 PLN02430 long-chain-fatty-acid 100.0 4.9E-38 1.1E-42 293.2 29.1 271 12-287 40-328 (660)
24 PRK06155 crotonobetaine/carnit 100.0 1.3E-37 2.8E-42 285.3 31.3 278 8-295 15-292 (542)
25 COG1021 EntE Peptide arylation 100.0 8.8E-39 1.9E-43 263.4 20.0 277 10-299 24-307 (542)
26 PRK13382 acyl-CoA synthetase; 100.0 2.1E-37 4.6E-42 283.6 31.1 262 13-290 42-303 (537)
27 PRK07529 AMP-binding domain pr 100.0 3.9E-37 8.5E-42 286.5 32.7 275 11-290 22-327 (632)
28 PRK05605 long-chain-fatty-acid 100.0 3.8E-37 8.2E-42 284.2 32.3 287 7-298 25-337 (573)
29 PRK06164 acyl-CoA synthetase; 100.0 2.7E-37 5.8E-42 283.3 30.5 275 10-288 6-286 (540)
30 PRK07786 long-chain-fatty-acid 100.0 3.1E-37 6.8E-42 282.9 30.8 269 13-293 16-287 (542)
31 TIGR02316 propion_prpE propion 100.0 4.4E-37 9.5E-42 286.2 31.8 269 17-290 55-345 (628)
32 TIGR03098 ligase_PEP_1 acyl-Co 100.0 6.2E-37 1.3E-41 279.3 31.8 266 15-288 1-266 (515)
33 PLN02246 4-coumarate--CoA liga 100.0 6.6E-37 1.4E-41 280.5 31.9 270 13-297 22-298 (537)
34 TIGR02188 Ac_CoA_lig_AcsA acet 100.0 5E-37 1.1E-41 286.0 30.9 270 16-290 59-349 (625)
35 PRK08162 acyl-CoA synthetase; 100.0 1.9E-36 4E-41 278.0 33.2 287 3-295 7-294 (545)
36 PRK08316 acyl-CoA synthetase; 100.0 1.8E-36 3.9E-41 276.8 32.9 278 12-298 9-287 (523)
37 PRK06334 long chain fatty acid 100.0 3.3E-37 7.1E-42 282.2 27.8 272 9-297 14-299 (539)
38 PRK08180 feruloyl-CoA synthase 100.0 8E-37 1.7E-41 283.8 30.2 266 11-288 36-321 (614)
39 PRK03640 O-succinylbenzoic aci 100.0 1E-36 2.2E-41 275.8 30.2 245 14-289 2-247 (483)
40 PF00501 AMP-binding: AMP-bind 100.0 7.3E-38 1.6E-42 278.2 22.2 255 20-289 1-265 (417)
41 PRK00174 acetyl-CoA synthetase 100.0 1.5E-36 3.2E-41 283.3 31.9 268 17-290 70-358 (637)
42 PTZ00297 pantothenate kinase; 100.0 6.9E-37 1.5E-41 297.6 30.6 265 13-288 426-706 (1452)
43 PTZ00216 acyl-CoA synthetase; 100.0 6.5E-37 1.4E-41 287.7 29.5 268 13-288 68-378 (700)
44 PRK06087 short chain acyl-CoA 100.0 3.1E-36 6.8E-41 276.7 33.1 279 8-297 17-302 (547)
45 PRK08008 caiC putative crotono 100.0 3.2E-36 6.9E-41 274.8 32.7 270 13-291 6-282 (517)
46 PLN02479 acetate-CoA ligase 100.0 2.8E-36 6.2E-41 277.9 32.6 286 5-290 11-302 (567)
47 PTZ00237 acetyl-CoA synthetase 100.0 1.5E-36 3.2E-41 283.0 30.6 270 17-289 62-367 (647)
48 PRK05857 acyl-CoA synthetase; 100.0 5.8E-37 1.3E-41 280.9 27.5 281 1-298 1-287 (540)
49 TIGR02275 DHB_AMP_lig 2,3-dihy 100.0 2.8E-36 6.2E-41 275.7 31.7 279 9-297 18-299 (527)
50 PRK06839 acyl-CoA synthetase; 100.0 1.9E-36 4.2E-41 274.9 30.1 261 14-297 2-264 (496)
51 PRK07638 acyl-CoA synthetase; 100.0 1.6E-36 3.5E-41 274.8 29.1 249 14-289 1-249 (487)
52 PRK05620 long-chain-fatty-acid 100.0 2.8E-36 6E-41 278.5 30.9 274 11-288 7-289 (576)
53 TIGR03208 cyc_hxne_CoA_lg cycl 100.0 5.4E-36 1.2E-40 274.5 31.6 272 11-297 19-310 (538)
54 PRK07470 acyl-CoA synthetase; 100.0 6.6E-36 1.4E-40 273.4 32.1 274 10-298 3-281 (528)
55 PRK13388 acyl-CoA synthetase; 100.0 3.2E-36 6.9E-41 275.9 29.6 256 13-291 2-259 (540)
56 PRK06178 acyl-CoA synthetase; 100.0 1.2E-35 2.5E-40 274.0 32.8 282 10-296 29-324 (567)
57 PRK04319 acetyl-CoA synthetase 100.0 4.1E-36 9E-41 277.0 29.7 264 14-289 42-313 (570)
58 PRK06188 acyl-CoA synthetase; 100.0 8E-36 1.7E-40 272.6 31.3 273 11-298 9-282 (524)
59 PRK07008 long-chain-fatty-acid 100.0 7.1E-36 1.5E-40 273.7 30.8 278 14-298 10-294 (539)
60 PRK06018 putative acyl-CoA syn 100.0 1.2E-35 2.6E-40 272.5 30.9 279 12-296 8-293 (542)
61 TIGR01217 ac_ac_CoA_syn acetoa 100.0 1E-35 2.2E-40 277.7 30.9 265 19-288 89-373 (652)
62 PRK08315 AMP-binding domain pr 100.0 2E-35 4.3E-40 272.0 32.4 285 6-298 8-316 (559)
63 PRK07514 malonyl-CoA synthase; 100.0 2.1E-35 4.4E-40 268.7 31.0 267 13-298 2-270 (504)
64 PRK06145 acyl-CoA synthetase; 100.0 1.9E-35 4.2E-40 268.4 30.4 263 14-298 2-265 (497)
65 PRK12583 acyl-CoA synthetase; 100.0 4.4E-35 9.6E-40 269.7 33.0 285 5-297 9-317 (558)
66 PRK12582 acyl-CoA synthetase; 100.0 1.3E-35 2.8E-40 276.2 29.6 269 8-288 43-333 (624)
67 PRK10946 entE enterobactin syn 100.0 2E-35 4.3E-40 270.6 30.3 262 10-288 21-289 (536)
68 PRK10524 prpE propionyl-CoA sy 100.0 2.5E-35 5.4E-40 274.8 31.4 268 17-289 56-345 (629)
69 PRK03584 acetoacetyl-CoA synth 100.0 3.3E-35 7.1E-40 275.0 31.3 258 26-289 96-373 (655)
70 PRK09274 peptide synthase; Pro 100.0 8.5E-36 1.8E-40 274.1 26.7 268 12-298 4-289 (552)
71 PLN02330 4-coumarate--CoA liga 100.0 4E-35 8.7E-40 269.2 30.1 267 13-297 27-301 (546)
72 PRK07867 acyl-CoA synthetase; 100.0 4.6E-35 1E-39 267.5 30.1 254 13-290 4-260 (529)
73 PRK07798 acyl-CoA synthetase; 100.0 6.4E-35 1.4E-39 267.1 30.8 261 14-283 3-280 (533)
74 PRK10252 entF enterobactin syn 100.0 1.3E-35 2.8E-40 296.8 28.4 257 4-289 448-707 (1296)
75 PRK05677 long-chain-fatty-acid 100.0 9.7E-35 2.1E-39 267.5 31.8 277 14-295 24-324 (562)
76 PRK12467 peptide synthase; Pro 100.0 8.9E-36 1.9E-40 318.1 28.0 260 3-289 3083-3345(3956)
77 PLN02574 4-coumarate--CoA liga 100.0 5.1E-35 1.1E-39 269.2 29.3 270 14-297 40-319 (560)
78 PRK07769 long-chain-fatty-acid 100.0 5.3E-35 1.1E-39 272.6 29.5 254 12-287 19-291 (631)
79 TIGR03205 pimA dicarboxylate-- 100.0 3.2E-34 6.8E-39 263.0 34.0 280 13-296 20-311 (541)
80 PRK08043 bifunctional acyl-[ac 100.0 2.7E-35 6E-40 277.9 26.7 261 12-288 202-472 (718)
81 TIGR02262 benz_CoA_lig benzoat 100.0 3.3E-34 7.2E-39 261.0 31.7 262 16-290 6-271 (508)
82 PRK07059 Long-chain-fatty-acid 100.0 4.5E-34 9.7E-39 262.9 32.6 280 13-297 22-327 (557)
83 TIGR03443 alpha_am_amid L-amin 100.0 8.7E-35 1.9E-39 292.2 29.3 272 13-289 235-524 (1389)
84 PRK05852 acyl-CoA synthetase; 100.0 2.2E-34 4.8E-39 263.7 29.2 266 13-291 15-287 (534)
85 TIGR01734 D-ala-DACP-lig D-ala 100.0 8.1E-35 1.8E-39 264.7 26.0 256 15-298 1-259 (502)
86 PRK12467 peptide synthase; Pro 100.0 8.8E-35 1.9E-39 310.5 29.0 263 3-290 501-766 (3956)
87 PRK13383 acyl-CoA synthetase; 100.0 3.2E-34 6.9E-39 261.6 28.5 249 12-290 33-283 (516)
88 PRK07868 acyl-CoA synthetase; 100.0 2.6E-34 5.7E-39 278.1 29.4 279 4-297 438-720 (994)
89 PRK06710 long-chain-fatty-acid 100.0 7.7E-34 1.7E-38 261.7 31.2 279 13-296 23-322 (563)
90 PRK05691 peptide synthase; Val 100.0 1.1E-34 2.5E-39 311.9 29.5 265 4-288 3709-3977(4334)
91 PRK12476 putative fatty-acid-- 100.0 2.3E-34 5.1E-39 267.3 27.4 255 12-288 32-305 (612)
92 PRK12316 peptide synthase; Pro 100.0 1.2E-34 2.5E-39 313.9 28.6 262 4-290 500-765 (5163)
93 PRK08751 putative long-chain f 100.0 1.1E-33 2.4E-38 260.6 31.0 281 13-298 24-330 (560)
94 PRK12492 long-chain-fatty-acid 100.0 1.8E-33 4E-38 259.0 32.0 280 13-297 23-333 (562)
95 PRK12316 peptide synthase; Pro 100.0 1.6E-34 3.5E-39 312.8 28.7 261 4-290 1992-2255(5163)
96 PRK08633 2-acyl-glycerophospho 100.0 4.9E-34 1.1E-38 282.7 29.0 278 10-298 611-899 (1146)
97 PRK06060 acyl-CoA synthetase; 100.0 5E-34 1.1E-38 269.1 26.4 244 14-289 4-254 (705)
98 PRK04813 D-alanine--poly(phosp 100.0 6.5E-34 1.4E-38 258.7 26.2 257 14-298 2-261 (503)
99 PRK05691 peptide synthase; Val 100.0 7.6E-34 1.6E-38 305.6 29.4 260 3-289 1120-1382(4334)
100 PRK09088 acyl-CoA synthetase; 100.0 1.8E-33 3.9E-38 255.0 27.1 246 21-297 2-252 (488)
101 PRK08974 long-chain-fatty-acid 100.0 2.1E-32 4.5E-37 252.0 33.0 280 13-297 22-325 (560)
102 PRK05851 long-chain-fatty-acid 100.0 1.3E-33 2.9E-38 257.9 24.3 244 14-287 1-261 (525)
103 KOG1180 Acyl-CoA synthetase [L 100.0 5.8E-34 1.3E-38 243.6 20.2 271 13-287 40-350 (678)
104 PRK05850 acyl-CoA synthetase; 100.0 3.6E-33 7.9E-38 258.0 27.3 251 14-286 1-274 (578)
105 PRK06814 acylglycerophosphoeth 100.0 7.1E-33 1.5E-37 274.0 29.8 267 11-288 628-900 (1140)
106 PRK13391 acyl-CoA synthetase; 100.0 2.3E-32 4.9E-37 249.1 28.2 257 20-290 3-266 (511)
107 PRK09029 O-succinylbenzoic aci 100.0 1.3E-32 2.9E-37 247.4 25.1 234 15-290 3-237 (458)
108 PRK13390 acyl-CoA synthetase; 100.0 3.3E-32 7.2E-37 247.5 27.1 248 22-289 5-260 (501)
109 PRK09192 acyl-CoA synthetase; 100.0 4.2E-32 9.1E-37 250.8 26.8 251 13-287 20-286 (579)
110 PRK08308 acyl-CoA synthetase; 100.0 7.3E-32 1.6E-36 239.5 25.9 208 32-290 1-209 (414)
111 PRK12406 long-chain-fatty-acid 100.0 4.9E-31 1.1E-35 240.2 29.0 250 31-290 3-262 (509)
112 PRK07787 acyl-CoA synthetase; 100.0 3.1E-31 6.7E-36 239.3 26.6 224 24-289 10-234 (471)
113 PRK08276 long-chain-fatty-acid 100.0 6.4E-31 1.4E-35 239.1 26.2 246 31-291 3-254 (502)
114 PRK07768 long-chain-fatty-acid 100.0 5.2E-31 1.1E-35 242.0 25.5 245 15-287 3-262 (545)
115 TIGR03089 conserved hypothetic 100.0 9.5E-31 2.1E-35 212.1 22.6 216 20-273 2-227 (227)
116 TIGR01923 menE O-succinylbenzo 100.0 1.4E-30 3.1E-35 232.8 23.2 216 41-291 1-217 (436)
117 PRK07445 O-succinylbenzoic aci 100.0 1.7E-30 3.7E-35 232.8 22.0 205 39-288 19-224 (452)
118 TIGR01733 AA-adenyl-dom amino 100.0 9.5E-30 2.1E-34 225.4 25.2 225 41-290 1-230 (408)
119 KOG1175 Acyl-CoA synthetase [L 100.0 3.9E-29 8.4E-34 222.8 21.0 269 19-297 69-357 (626)
120 PLN03051 acyl-activating enzym 100.0 4.2E-28 9.1E-33 220.3 22.1 213 71-290 1-227 (499)
121 COG1020 EntF Non-ribosomal pep 99.9 2.3E-24 4.9E-29 201.8 26.4 252 7-288 219-474 (642)
122 KOG3628 Predicted AMP-binding 99.9 7.4E-21 1.6E-25 174.1 23.8 274 14-299 770-1064(1363)
123 TIGR02372 4_coum_CoA_lig 4-cou 99.7 7.5E-16 1.6E-20 134.7 12.3 105 183-289 95-202 (386)
124 PRK07824 O-succinylbenzoic aci 99.6 2.4E-14 5.1E-19 124.9 13.4 109 180-290 32-145 (358)
125 KOG1178 Non-ribosomal peptide 99.5 1.1E-13 2.4E-18 130.5 11.8 255 15-291 37-308 (1032)
126 TIGR02155 PA_CoA_ligase phenyl 99.4 3.8E-12 8.1E-17 113.5 10.2 110 180-289 72-185 (422)
127 TIGR03335 F390_ftsA coenzyme F 99.1 4.9E-10 1.1E-14 100.4 11.2 107 180-288 83-193 (445)
128 KOG3628 Predicted AMP-binding 99.1 1.6E-09 3.4E-14 101.1 11.3 251 13-285 93-375 (1363)
129 COG1541 PaaK Coenzyme F390 syn 98.5 1.5E-06 3.3E-11 75.6 11.3 114 179-292 86-203 (438)
130 COG1541 PaaK Coenzyme F390 syn 96.7 0.022 4.8E-07 50.2 10.3 93 39-132 109-203 (438)
131 TIGR02304 aden_form_hyp probab 96.5 0.03 6.5E-07 50.0 10.6 100 185-289 101-205 (430)
132 TIGR03335 F390_ftsA coenzyme F 93.5 1.3 2.8E-05 40.0 11.5 80 39-121 105-186 (445)
133 TIGR02155 PA_CoA_ligase phenyl 93.2 0.92 2E-05 40.6 10.0 88 39-127 94-183 (422)
134 PF04443 LuxE: Acyl-protein sy 92.2 1.3 2.9E-05 38.7 9.3 109 179-288 85-209 (365)
135 PF00501 AMP-binding: AMP-bind 89.9 4.9 0.00011 35.6 11.1 89 180-277 7-99 (417)
136 TIGR03089 conserved hypothetic 88.8 3.4 7.4E-05 33.5 8.4 75 29-112 150-226 (227)
137 TIGR03590 PseG pseudaminic aci 88.4 7.7 0.00017 32.6 10.5 91 47-149 18-113 (279)
138 PRK07656 long-chain-fatty-acid 88.0 5.3 0.00012 36.4 10.1 84 38-125 184-269 (513)
139 KOG1176 Acyl-CoA synthetase [L 87.0 4.2 9.1E-05 37.6 8.6 87 200-287 43-135 (537)
140 PRK06187 long-chain-fatty-acid 86.8 5.6 0.00012 36.3 9.6 83 39-125 186-269 (521)
141 PRK06334 long chain fatty acid 86.2 18 0.0004 33.4 12.7 98 27-127 181-289 (539)
142 KOG1177 Long chain fatty acid 85.4 13 0.00027 33.7 10.1 93 27-122 232-335 (596)
143 COG0031 CysK Cysteine synthase 85.3 18 0.00039 30.7 10.7 69 50-119 47-116 (300)
144 PRK08315 AMP-binding domain pr 85.2 8.1 0.00018 35.8 9.9 82 38-122 217-300 (559)
145 PLN03052 acetate--CoA ligase; 84.2 19 0.0004 35.0 12.0 99 181-281 188-290 (728)
146 PRK12583 acyl-CoA synthetase; 83.8 10 0.00022 35.1 9.9 82 38-122 219-302 (558)
147 PF03321 GH3: GH3 auxin-respon 83.7 0.58 1.3E-05 43.2 1.5 32 179-210 76-108 (528)
148 PTZ00237 acetyl-CoA synthetase 83.0 19 0.00042 34.3 11.5 79 200-279 90-172 (647)
149 PLN02736 long-chain acyl-CoA s 82.5 32 0.00069 32.8 12.7 85 201-286 77-165 (651)
150 PLN03102 acyl-activating enzym 82.2 19 0.0004 33.8 10.9 80 202-283 39-123 (579)
151 PRK09274 peptide synthase; Pro 82.0 19 0.00041 33.3 10.9 98 181-279 19-121 (552)
152 TIGR02188 Ac_CoA_lig_AcsA acet 81.6 24 0.00052 33.3 11.6 97 180-280 69-169 (625)
153 PRK00174 acetyl-CoA synthetase 80.7 27 0.00058 33.1 11.6 96 181-280 80-179 (637)
154 PRK13295 cyclohexanecarboxylat 80.3 23 0.00049 32.9 10.7 96 181-280 37-136 (547)
155 PRK08316 acyl-CoA synthetase; 80.0 24 0.00052 32.3 10.7 85 201-286 35-123 (523)
156 PRK07788 acyl-CoA synthetase; 79.9 18 0.0004 33.4 10.0 83 202-285 74-160 (549)
157 PRK03584 acetoacetyl-CoA synth 79.7 31 0.00067 32.9 11.6 95 181-280 97-195 (655)
158 COG1167 ARO8 Transcriptional r 79.4 9.6 0.00021 34.6 7.7 63 215-281 170-236 (459)
159 PRK07529 AMP-binding domain pr 79.2 25 0.00054 33.4 10.8 97 180-278 37-136 (632)
160 PRK06839 acyl-CoA synthetase; 79.1 37 0.0008 30.8 11.6 86 200-286 25-115 (496)
161 PLN02654 acetate-CoA ligase 78.2 37 0.0008 32.5 11.6 96 181-280 102-201 (666)
162 PLN02249 indole-3-acetic acid- 77.4 1.4 2.9E-05 41.3 1.7 30 180-209 97-127 (597)
163 TIGR02316 propion_prpE propion 77.1 47 0.001 31.5 11.9 95 181-279 65-163 (628)
164 COG4009 Uncharacterized protei 76.9 10 0.00022 24.7 5.0 66 38-114 8-76 (88)
165 PLN02565 cysteine synthase 76.6 49 0.0011 28.5 11.4 91 30-120 31-122 (322)
166 PRK06155 crotonobetaine/carnit 76.5 28 0.00061 32.3 10.1 86 201-287 45-134 (542)
167 TIGR01217 ac_ac_CoA_syn acetoa 76.3 43 0.00092 32.0 11.5 92 183-279 99-194 (652)
168 PLN02556 cysteine synthase/L-3 75.8 36 0.00079 29.9 10.0 64 56-119 101-165 (368)
169 PRK08279 long-chain-acyl-CoA s 75.7 44 0.00096 31.4 11.4 96 180-285 49-148 (600)
170 PRK08314 long-chain-fatty-acid 75.6 24 0.00053 32.5 9.5 84 202-286 35-123 (546)
171 PRK13388 acyl-CoA synthetase; 75.3 48 0.001 30.7 11.3 84 201-285 25-113 (540)
172 TIGR01733 AA-adenyl-dom amino 75.2 24 0.00052 30.9 9.1 67 219-286 20-87 (408)
173 KOG0023 Alcohol dehydrogenase, 75.2 23 0.0005 30.3 8.0 76 55-133 173-248 (360)
174 PRK07514 malonyl-CoA synthase; 75.0 30 0.00066 31.4 9.9 86 200-286 26-115 (504)
175 PRK05850 acyl-CoA synthetase; 75.0 62 0.0013 30.2 12.1 104 180-286 13-124 (578)
176 TIGR03098 ligase_PEP_1 acyl-Co 75.0 24 0.00052 32.2 9.3 83 202-285 25-111 (515)
177 TIGR01923 menE O-succinylbenzo 74.8 14 0.00029 33.0 7.4 81 38-124 129-210 (436)
178 PRK05857 acyl-CoA synthetase; 74.7 34 0.00073 31.7 10.2 94 180-281 26-123 (540)
179 PRK07798 acyl-CoA synthetase; 74.5 51 0.0011 30.1 11.3 84 201-286 27-115 (533)
180 PRK11761 cysM cysteine synthas 74.4 53 0.0011 27.9 11.2 89 28-119 26-117 (296)
181 PRK04319 acetyl-CoA synthetase 74.3 42 0.00091 31.3 10.8 84 201-285 72-159 (570)
182 PRK05605 long-chain-fatty-acid 74.2 30 0.00064 32.3 9.7 83 202-285 57-143 (573)
183 PRK05677 long-chain-fatty-acid 74.1 40 0.00087 31.3 10.6 81 201-282 48-133 (562)
184 PRK08276 long-chain-fatty-acid 74.0 36 0.00077 31.0 10.1 84 201-285 10-97 (502)
185 PRK07059 Long-chain-fatty-acid 74.0 45 0.00098 30.9 10.9 83 201-284 47-133 (557)
186 PLN02246 4-coumarate--CoA liga 73.9 29 0.00063 32.0 9.6 83 201-285 49-136 (537)
187 PLN02614 long-chain acyl-CoA s 73.1 90 0.002 29.9 12.9 84 201-286 78-166 (666)
188 TIGR01139 cysK cysteine syntha 72.9 47 0.001 28.1 9.9 93 28-121 20-113 (298)
189 cd01445 TST_Repeats Thiosulfat 72.9 13 0.00028 27.5 5.7 43 50-92 81-126 (138)
190 PRK03640 O-succinylbenzoic aci 72.8 68 0.0015 29.0 11.5 95 180-284 14-112 (483)
191 PRK08008 caiC putative crotono 72.4 51 0.0011 30.1 10.7 100 180-284 19-122 (517)
192 PRK10524 prpE propionyl-CoA sy 72.3 62 0.0013 30.6 11.5 96 180-279 65-164 (629)
193 PRK06087 short chain acyl-CoA 72.2 40 0.00086 31.2 10.0 77 201-278 48-128 (547)
194 PRK06188 acyl-CoA synthetase; 72.1 30 0.00065 31.7 9.2 83 38-124 186-268 (524)
195 cd06448 L-Ser-dehyd Serine deh 72.0 63 0.0014 27.7 10.7 90 28-120 15-106 (316)
196 PRK08633 2-acyl-glycerophospho 71.9 48 0.001 33.9 11.3 98 180-286 627-727 (1146)
197 PLN03051 acyl-activating enzym 71.5 32 0.00069 31.5 9.1 85 38-125 137-222 (499)
198 PLN02574 4-coumarate--CoA liga 71.0 70 0.0015 29.8 11.4 98 181-286 52-154 (560)
199 TIGR01136 cysKM cysteine synth 70.3 44 0.00094 28.4 9.1 90 28-120 21-113 (299)
200 COG1064 AdhP Zn-dependent alco 70.1 28 0.0006 30.2 7.6 61 55-119 158-218 (339)
201 PRK07476 eutB threonine dehydr 70.0 51 0.0011 28.3 9.5 94 28-124 33-126 (322)
202 PRK13383 acyl-CoA synthetase; 70.0 45 0.00098 30.6 9.8 84 202-286 60-147 (516)
203 PLN02247 indole-3-acetic acid- 69.9 5.6 0.00012 37.3 3.7 29 182-210 88-117 (606)
204 PLN03013 cysteine synthase 69.9 76 0.0016 28.6 10.6 70 51-120 160-230 (429)
205 PRK13391 acyl-CoA synthetase; 69.9 76 0.0016 29.0 11.3 97 181-285 10-110 (511)
206 COG0399 WecE Predicted pyridox 69.9 26 0.00056 30.9 7.6 66 49-118 59-129 (374)
207 PRK08751 putative long-chain f 69.8 38 0.00083 31.4 9.4 82 202-284 50-136 (560)
208 PRK08308 acyl-CoA synthetase; 69.8 77 0.0017 28.0 11.0 85 38-126 119-205 (414)
209 PLN02330 4-coumarate--CoA liga 69.6 51 0.0011 30.5 10.1 84 201-285 54-141 (546)
210 PLN02861 long-chain-fatty-acid 68.7 60 0.0013 31.1 10.5 84 201-286 76-164 (660)
211 PRK07470 acyl-CoA synthetase; 68.4 77 0.0017 29.1 11.0 81 201-283 31-116 (528)
212 TIGR02275 DHB_AMP_lig 2,3-dihy 67.7 68 0.0015 29.5 10.5 95 27-125 181-287 (527)
213 KOG0025 Zn2+-binding dehydroge 67.4 23 0.0005 29.8 6.3 64 60-123 157-221 (354)
214 TIGR03208 cyc_hxne_CoA_lg cycl 67.3 70 0.0015 29.5 10.6 96 181-280 35-134 (538)
215 PRK09088 acyl-CoA synthetase; 67.2 84 0.0018 28.5 10.9 79 201-280 21-103 (488)
216 TIGR02379 ECA_wecE TDP-4-keto- 67.1 24 0.00052 31.1 7.0 60 55-118 62-126 (376)
217 PRK06164 acyl-CoA synthetase; 67.0 67 0.0015 29.6 10.4 94 28-125 180-283 (540)
218 PLN02387 long-chain-fatty-acid 67.0 59 0.0013 31.4 10.2 85 201-287 105-194 (696)
219 TIGR03443 alpha_am_amid L-amin 66.5 61 0.0013 34.1 10.9 98 180-278 248-349 (1389)
220 PRK05620 long-chain-fatty-acid 66.3 1.1E+02 0.0025 28.4 12.3 86 38-124 199-285 (576)
221 PLN02479 acetate-CoA ligase 66.2 96 0.0021 28.9 11.3 80 202-282 45-128 (567)
222 PRK05852 acyl-CoA synthetase; 66.2 69 0.0015 29.5 10.2 90 180-277 28-121 (534)
223 PLN02860 o-succinylbenzoate-Co 66.1 82 0.0018 29.3 10.8 97 27-127 170-276 (563)
224 TIGR02262 benz_CoA_lig benzoat 66.1 1.1E+02 0.0023 28.0 11.4 95 180-285 17-116 (508)
225 PRK11706 TDP-4-oxo-6-deoxy-D-g 66.0 29 0.00062 30.5 7.3 59 56-118 63-126 (375)
226 PF00464 SHMT: Serine hydroxym 65.6 99 0.0021 27.6 10.4 94 89-205 144-245 (399)
227 cd00640 Trp-synth-beta_II Tryp 65.4 74 0.0016 25.9 11.2 95 27-122 13-107 (244)
228 KOG1138 Predicted cleavage and 65.1 28 0.00061 31.6 6.8 86 30-122 390-477 (653)
229 TIGR01747 diampropi_NH3ly diam 64.9 1E+02 0.0022 27.3 11.3 114 8-123 17-152 (376)
230 PRK08162 acyl-CoA synthetase; 64.6 52 0.0011 30.4 9.1 84 201-285 42-129 (545)
231 PF01041 DegT_DnrJ_EryC1: DegT 64.5 20 0.00044 31.3 6.1 90 15-118 25-120 (363)
232 PLN02620 indole-3-acetic acid- 64.0 6.6 0.00014 36.8 3.0 31 180-210 98-129 (612)
233 COG0365 Acs Acyl-coenzyme A sy 63.3 91 0.002 29.0 10.1 97 183-284 24-125 (528)
234 PLN00011 cysteine synthase 63.2 80 0.0017 27.2 9.3 90 30-120 33-124 (323)
235 PRK06178 acyl-CoA synthetase; 63.0 68 0.0015 29.8 9.7 84 202-286 58-145 (567)
236 PRK07867 acyl-CoA synthetase; 63.0 86 0.0019 29.0 10.2 84 201-285 27-115 (529)
237 PRK04940 hypothetical protein; 62.8 42 0.00091 26.1 6.7 43 65-108 60-103 (180)
238 TIGR03588 PseC UDP-4-keto-6-de 62.5 90 0.002 27.4 9.8 67 49-118 54-128 (380)
239 PRK12492 long-chain-fatty-acid 62.4 51 0.0011 30.6 8.7 80 201-281 48-132 (562)
240 PRK08043 bifunctional acyl-[ac 62.2 95 0.0021 30.0 10.7 81 38-121 383-465 (718)
241 KOG1252 Cystathionine beta-syn 61.8 93 0.002 26.9 9.0 61 60-120 99-159 (362)
242 TIGR01734 D-ala-DACP-lig D-ala 61.8 81 0.0018 28.6 9.8 85 38-125 159-246 (502)
243 PRK07638 acyl-CoA synthetase; 61.6 78 0.0017 28.7 9.6 85 38-126 161-246 (487)
244 PRK06382 threonine dehydratase 61.5 93 0.002 27.8 9.7 49 74-122 82-130 (406)
245 COG2236 Predicted phosphoribos 61.2 16 0.00035 28.7 4.3 33 38-70 5-37 (192)
246 COG1022 FAA1 Long-chain acyl-C 61.1 90 0.002 29.6 9.8 97 25-125 187-293 (613)
247 cd01449 TST_Repeat_2 Thiosulfa 61.0 23 0.0005 24.9 4.9 41 50-90 64-104 (118)
248 PRK08574 cystathionine gamma-s 59.9 1E+02 0.0023 27.2 9.7 57 61-119 89-145 (385)
249 PRK06381 threonine synthase; V 59.8 1.1E+02 0.0024 26.1 10.3 93 24-122 25-120 (319)
250 PTZ00342 acyl-CoA synthetase; 59.6 94 0.002 30.4 10.0 101 181-287 74-193 (746)
251 TIGR01138 cysM cysteine syntha 59.2 1.1E+02 0.0024 25.9 11.2 92 27-119 21-113 (290)
252 PRK12406 long-chain-fatty-acid 59.2 82 0.0018 28.8 9.3 84 202-286 11-98 (509)
253 PF05728 UPF0227: Uncharacteri 57.9 66 0.0014 25.2 7.3 97 2-109 6-103 (187)
254 TIGR01137 cysta_beta cystathio 57.6 64 0.0014 29.2 8.2 92 28-120 25-117 (454)
255 PLN02550 threonine dehydratase 57.3 1.8E+02 0.0038 27.6 12.2 98 21-123 116-215 (591)
256 cd01519 RHOD_HSP67B2 Member of 57.3 32 0.00068 23.6 5.0 53 38-90 36-92 (106)
257 PRK13382 acyl-CoA synthetase; 57.0 1.2E+02 0.0025 28.1 10.0 82 202-284 68-153 (537)
258 PRK12476 putative fatty-acid-- 56.9 1.8E+02 0.0038 27.5 12.7 102 181-285 47-156 (612)
259 PF02729 OTCace_N: Aspartate/o 56.8 79 0.0017 23.5 10.2 87 44-131 16-114 (142)
260 PRK09192 acyl-CoA synthetase; 56.5 1.3E+02 0.0029 28.1 10.4 86 200-286 47-143 (579)
261 PRK11658 UDP-4-amino-4-deoxy-L 56.2 64 0.0014 28.4 7.8 63 50-116 59-126 (379)
262 PRK12582 acyl-CoA synthetase; 56.2 75 0.0016 30.1 8.7 79 200-279 78-165 (624)
263 cd00615 Orn_deC_like Ornithine 55.8 1.1E+02 0.0023 25.8 8.8 55 61-118 96-161 (294)
264 TIGR03595 Obg_CgtA_exten Obg f 55.7 16 0.00034 23.4 2.8 19 52-70 45-63 (69)
265 PRK05939 hypothetical protein; 55.4 1.5E+02 0.0032 26.4 9.9 57 61-119 83-139 (397)
266 PRK07786 long-chain-fatty-acid 55.1 1.1E+02 0.0025 28.2 9.6 82 202-284 42-127 (542)
267 COG0318 CaiC Acyl-CoA syntheta 54.7 1.6E+02 0.0034 27.3 10.4 93 180-280 23-119 (534)
268 cd02067 B12-binding B12 bindin 54.7 74 0.0016 22.5 8.1 55 80-134 19-76 (119)
269 PRK15407 lipopolysaccharide bi 54.7 1.7E+02 0.0036 26.6 10.2 55 60-118 107-166 (438)
270 PRK07008 long-chain-fatty-acid 54.5 56 0.0012 30.2 7.5 86 38-125 194-281 (539)
271 PLN02409 serine--glyoxylate am 54.4 1.2E+02 0.0026 26.9 9.3 32 86-117 82-113 (401)
272 PLN02723 3-mercaptopyruvate su 54.2 33 0.00071 29.5 5.4 56 39-94 238-299 (320)
273 PRK06702 O-acetylhomoserine am 54.0 86 0.0019 28.3 8.2 57 61-119 97-155 (432)
274 PRK08974 long-chain-fatty-acid 53.7 1.4E+02 0.003 27.8 9.9 80 201-282 47-132 (560)
275 PTZ00216 acyl-CoA synthetase; 53.6 1.7E+02 0.0036 28.3 10.7 86 199-286 118-208 (700)
276 PRK06018 putative acyl-CoA syn 53.5 94 0.002 28.7 8.8 84 200-284 37-124 (542)
277 TIGR00649 MG423 conserved hypo 53.3 1.7E+02 0.0037 26.3 10.2 67 60-126 315-390 (422)
278 PF09269 DUF1967: Domain of un 53.1 15 0.00032 23.5 2.4 19 51-69 44-62 (69)
279 PRK11493 sseA 3-mercaptopyruva 52.9 33 0.00072 28.8 5.2 54 39-92 201-259 (281)
280 PRK04813 D-alanine--poly(phosp 52.7 93 0.002 28.2 8.6 78 202-280 27-108 (503)
281 cd01562 Thr-dehyd Threonine de 52.6 1.4E+02 0.003 25.2 9.1 94 25-123 28-123 (304)
282 PLN02430 long-chain-fatty-acid 52.5 2.2E+02 0.0048 27.3 12.9 82 202-285 76-162 (660)
283 PRK10717 cysteine synthase A; 52.5 1.5E+02 0.0033 25.5 11.2 90 29-120 28-119 (330)
284 PRK13390 acyl-CoA synthetase; 52.1 1.9E+02 0.004 26.3 11.4 80 201-281 23-106 (501)
285 PRK06710 long-chain-fatty-acid 51.1 1.1E+02 0.0023 28.5 8.8 81 201-282 48-132 (563)
286 PRK06060 acyl-CoA synthetase; 51.0 1.4E+02 0.0031 28.8 9.8 81 202-283 30-114 (705)
287 PRK09424 pntA NAD(P) transhydr 50.5 1E+02 0.0022 28.6 8.1 72 42-117 139-214 (509)
288 cd01561 CBS_like CBS_like: Thi 50.2 1.5E+02 0.0033 24.9 10.9 93 27-121 15-109 (291)
289 PRK08526 threonine dehydratase 50.1 1.8E+02 0.0039 26.0 9.5 97 26-127 32-130 (403)
290 PRK07787 acyl-CoA synthetase; 50.1 1.2E+02 0.0027 27.3 8.9 74 202-279 25-100 (471)
291 PRK10946 entE enterobactin syn 49.4 2.2E+02 0.0047 26.3 10.6 85 38-126 200-287 (536)
292 PF09153 DUF1938: Domain of un 49.0 46 0.001 22.1 4.1 32 31-62 16-54 (86)
293 PLN02356 phosphateglycerate ki 48.3 1.7E+02 0.0037 26.4 9.0 89 30-119 69-158 (423)
294 TIGR03205 pimA dicarboxylate-- 48.3 1.2E+02 0.0026 27.9 8.7 77 202-279 46-126 (541)
295 PRK09029 O-succinylbenzoic aci 48.2 1.4E+02 0.003 26.8 8.9 78 201-279 27-108 (458)
296 PRK10696 tRNA 2-thiocytidine b 47.7 1.6E+02 0.0035 24.3 9.7 70 50-119 14-95 (258)
297 PRK11267 biopolymer transport 47.6 1E+02 0.0022 22.8 6.6 50 38-93 79-131 (141)
298 PRK08134 O-acetylhomoserine am 47.5 2.2E+02 0.0047 25.8 10.1 57 61-119 100-157 (433)
299 PF15186 TEX13: Testis-express 46.8 20 0.00043 26.6 2.5 49 4-52 2-50 (152)
300 PRK10252 entF enterobactin syn 46.5 2E+02 0.0044 30.1 10.7 95 27-124 596-702 (1296)
301 KOG1179 Very long-chain acyl-C 46.5 2.2E+02 0.0048 26.7 9.4 82 39-124 261-344 (649)
302 TIGR01127 ilvA_1Cterm threonin 45.9 2.1E+02 0.0046 25.2 9.8 93 26-123 12-106 (380)
303 PRK10595 SOS cell division inh 45.6 1.2E+02 0.0026 23.3 6.6 18 101-118 96-113 (164)
304 PRK09162 hypoxanthine-guanine 44.7 76 0.0016 24.7 5.7 50 37-88 14-63 (181)
305 cd02067 B12-binding B12 bindin 43.8 1.1E+02 0.0025 21.5 6.5 52 228-279 4-58 (119)
306 cd01563 Thr-synth_1 Threonine 43.7 2.1E+02 0.0045 24.5 10.9 89 29-123 38-128 (324)
307 TIGR02080 O_succ_thio_ly O-suc 43.7 1.6E+02 0.0035 26.0 8.3 13 61-73 87-99 (382)
308 TIGR03201 dearomat_had 6-hydro 43.0 1.4E+02 0.0031 25.7 7.8 59 56-118 159-217 (349)
309 PRK12723 flagellar biosynthesi 42.9 2.4E+02 0.0053 25.1 9.6 53 65-117 175-239 (388)
310 TIGR02304 aden_form_hyp probab 42.8 2.6E+02 0.0056 25.3 9.8 106 39-148 118-223 (430)
311 PRK12483 threonine dehydratase 42.8 2.3E+02 0.0049 26.5 9.2 54 74-127 94-147 (521)
312 TIGR02035 D_Ser_am_lyase D-ser 42.5 2.3E+02 0.0049 25.7 9.0 60 69-128 156-215 (431)
313 PF08734 GYD: GYD domain; Int 42.0 1.1E+02 0.0023 20.7 7.4 63 46-108 19-91 (91)
314 cd06451 AGAT_like Alanine-glyo 42.0 2E+02 0.0043 24.8 8.6 17 196-212 189-207 (356)
315 PRK08180 feruloyl-CoA synthase 41.9 1.8E+02 0.0039 27.5 8.9 94 181-279 52-154 (614)
316 TIGR02822 adh_fam_2 zinc-bindi 41.9 1.4E+02 0.0029 25.7 7.4 58 56-117 158-215 (329)
317 cd01448 TST_Repeat_1 Thiosulfa 41.6 80 0.0017 22.3 5.1 41 50-90 65-106 (122)
318 PF13580 SIS_2: SIS domain; PD 41.5 83 0.0018 23.1 5.3 54 41-94 80-136 (138)
319 cd06353 PBP1_BmpA_Med_like Per 41.5 2E+02 0.0044 23.7 8.6 104 13-120 65-188 (258)
320 TIGR02326 transamin_PhnW 2-ami 41.4 1.8E+02 0.0038 25.3 8.2 70 49-118 37-108 (363)
321 cd01016 TroA Metal binding pro 41.4 2.1E+02 0.0046 23.9 8.6 84 42-127 136-226 (276)
322 PRK06814 acylglycerophosphoeth 41.3 3.5E+02 0.0076 27.9 11.4 95 27-124 791-896 (1140)
323 PRK05638 threonine synthase; V 41.2 1.4E+02 0.003 27.1 7.6 91 29-125 80-172 (442)
324 PRK07769 long-chain-fatty-acid 40.9 3.2E+02 0.007 25.9 12.8 84 200-284 53-142 (631)
325 COG1587 HemD Uroporphyrinogen- 40.1 72 0.0016 26.2 5.2 66 50-121 63-133 (248)
326 COG0796 MurI Glutamate racemas 39.8 2.3E+02 0.0049 23.8 9.2 77 17-97 18-100 (269)
327 cd02071 MM_CoA_mut_B12_BD meth 39.5 1.4E+02 0.003 21.3 6.7 58 78-135 17-77 (122)
328 PRK06145 acyl-CoA synthetase; 39.1 2.3E+02 0.0049 25.7 8.9 80 202-282 27-110 (497)
329 PRK06815 hypothetical protein; 38.8 2.5E+02 0.0054 24.0 9.6 52 71-122 74-125 (317)
330 cd06447 D-Ser-dehyd D-Serine d 38.8 2E+02 0.0044 25.8 8.0 57 68-124 137-193 (404)
331 PRK06721 threonine synthase; R 38.6 1.9E+02 0.0042 25.2 7.9 90 28-123 42-134 (352)
332 cd06454 KBL_like KBL_like; thi 38.6 2.5E+02 0.0054 24.0 8.7 54 62-119 83-140 (349)
333 PRK09422 ethanol-active dehydr 38.1 2.5E+02 0.0054 23.8 8.8 59 57-118 156-214 (338)
334 cd01137 PsaA Metal binding pro 38.1 2.5E+02 0.0053 23.7 8.8 84 42-125 152-240 (287)
335 COG1611 Predicted Rossmann fol 38.1 1.7E+02 0.0037 23.4 6.8 70 28-102 14-84 (205)
336 cd04724 Tryptophan_synthase_al 38.1 2.2E+02 0.0049 23.3 9.1 12 105-116 123-134 (242)
337 PF09312 SurA_N: SurA N-termin 37.8 74 0.0016 22.7 4.4 32 29-60 2-33 (118)
338 PF01297 TroA: Periplasmic sol 37.6 1.5E+02 0.0032 24.4 6.8 85 42-129 127-217 (256)
339 PRK09224 threonine dehydratase 37.5 3.3E+02 0.0072 25.2 9.5 96 24-124 30-127 (504)
340 PLN02723 3-mercaptopyruvate su 37.4 76 0.0016 27.3 5.1 48 50-97 89-138 (320)
341 KOG1175 Acyl-CoA synthetase [L 37.2 3.8E+02 0.0083 25.7 10.0 97 181-281 78-178 (626)
342 PRK08248 O-acetylhomoserine am 37.1 3.2E+02 0.0069 24.7 9.7 56 61-118 100-156 (431)
343 PF02073 Peptidase_M29: Thermo 37.0 96 0.0021 27.7 5.8 45 45-89 3-51 (398)
344 KOG0024 Sorbitol dehydrogenase 37.0 2.8E+02 0.0061 24.1 8.2 80 39-122 143-225 (354)
345 PRK06108 aspartate aminotransf 37.0 2.8E+02 0.0061 24.1 12.8 22 194-215 236-257 (382)
346 PRK00865 glutamate racemase; P 36.8 2.3E+02 0.005 23.5 7.7 55 18-76 19-79 (261)
347 COG1167 ARO8 Transcriptional r 36.6 3.3E+02 0.0072 24.8 13.3 59 61-120 176-235 (459)
348 PRK07409 threonine synthase; V 36.4 2E+02 0.0044 25.0 7.7 90 28-123 45-137 (353)
349 PRK07503 methionine gamma-lyas 36.2 2.1E+02 0.0046 25.5 7.9 56 61-118 101-157 (403)
350 COG0608 RecJ Single-stranded D 36.2 2.8E+02 0.0062 25.5 8.9 84 61-148 33-122 (491)
351 PRK08198 threonine dehydratase 36.0 3.2E+02 0.0068 24.4 9.1 61 64-125 70-130 (404)
352 PRK13479 2-aminoethylphosphona 36.0 2.8E+02 0.0062 24.0 8.7 60 60-119 51-111 (368)
353 PLN02970 serine racemase 35.9 2.9E+02 0.0062 23.8 9.5 54 70-123 80-133 (328)
354 PRK09265 aminotransferase AlaT 35.8 3.1E+02 0.0067 24.2 10.6 14 262-275 351-364 (404)
355 COG2885 OmpA Outer membrane pr 35.8 1.1E+02 0.0024 23.9 5.4 57 13-70 98-160 (190)
356 PRK07868 acyl-CoA synthetase; 35.7 3.4E+02 0.0074 27.7 10.0 81 202-285 472-555 (994)
357 cd07050 BMC_EutL_repeat2 ethan 35.6 72 0.0016 21.1 3.4 39 54-92 4-43 (87)
358 COG1240 ChlD Mg-chelatase subu 35.6 1.1E+02 0.0023 25.4 5.3 176 31-269 82-258 (261)
359 cd00378 SHMT Serine-glycine hy 35.5 1.9E+02 0.0041 25.5 7.5 59 61-119 102-169 (402)
360 PRK14807 histidinol-phosphate 35.4 2.5E+02 0.0054 24.3 8.1 55 61-118 97-155 (351)
361 cd08239 THR_DH_like L-threonin 35.1 2.4E+02 0.0052 24.1 8.0 59 56-118 156-215 (339)
362 TIGR03772 anch_rpt_subst ancho 34.8 3E+02 0.0064 25.4 8.5 82 41-124 345-433 (479)
363 TIGR00067 glut_race glutamate 34.8 2.5E+02 0.0054 23.2 7.6 56 17-76 11-73 (251)
364 PF07722 Peptidase_C26: Peptid 34.7 59 0.0013 26.2 3.8 29 83-111 32-60 (217)
365 PF00156 Pribosyltran: Phospho 34.6 1.1E+02 0.0023 21.6 4.9 27 39-65 4-30 (125)
366 COG1171 IlvA Threonine dehydra 34.5 3.2E+02 0.0069 23.9 9.2 106 20-129 31-138 (347)
367 TIGR02803 ExbD_1 TonB system t 34.4 1.1E+02 0.0025 21.8 4.9 28 63-90 84-114 (122)
368 PRK10287 thiosulfate:cyanide s 34.2 1.6E+02 0.0035 20.4 5.8 50 38-94 41-90 (104)
369 PF00291 PALP: Pyridoxal-phosp 34.0 2E+02 0.0044 24.1 7.3 56 64-120 56-111 (306)
370 TIGR02370 pyl_corrinoid methyl 34.0 2.3E+02 0.0051 22.3 10.0 98 36-133 48-160 (197)
371 TIGR01279 DPOR_bchN light-inde 34.0 3.5E+02 0.0075 24.2 9.4 67 63-130 273-340 (407)
372 PRK08638 threonine dehydratase 33.8 3.2E+02 0.0068 23.7 8.9 55 71-125 81-135 (333)
373 TIGR03366 HpnZ_proposed putati 33.8 2.8E+02 0.006 23.0 8.2 77 38-118 92-172 (280)
374 PRK05851 long-chain-fatty-acid 33.5 3.8E+02 0.0083 24.6 10.1 99 181-285 15-122 (525)
375 KOG2631 Class II aldolase/addu 33.5 1.2E+02 0.0025 24.3 4.9 49 16-64 169-228 (238)
376 PF01990 ATP-synt_F: ATP synth 33.4 1.1E+02 0.0023 20.8 4.4 68 81-149 10-79 (95)
377 smart00450 RHOD Rhodanese Homo 33.2 1.4E+02 0.003 19.5 5.1 40 51-90 43-82 (100)
378 COG0379 NadA Quinolinate synth 33.2 3.2E+02 0.0069 23.5 11.4 106 9-123 103-221 (324)
379 TIGR00936 ahcY adenosylhomocys 33.0 3.6E+02 0.0079 24.2 11.2 61 62-122 30-92 (406)
380 cd01019 ZnuA Zinc binding prot 32.9 3E+02 0.0065 23.2 8.9 85 41-127 155-244 (286)
381 COG1663 LpxK Tetraacyldisaccha 32.8 3.3E+02 0.0072 23.7 8.5 24 101-124 130-154 (336)
382 PTZ00297 pantothenate kinase; 32.3 4.2E+02 0.0092 28.4 10.1 85 201-288 456-544 (1452)
383 cd02069 methionine_synthase_B1 32.1 2.3E+02 0.0049 22.7 6.7 56 224-279 89-147 (213)
384 cd00754 MoaD Ubiquitin domain 32.0 1.4E+02 0.0031 19.1 5.0 45 13-72 25-76 (80)
385 PLN02263 serine decarboxylase 31.9 4.1E+02 0.0089 24.4 11.4 23 183-207 227-249 (470)
386 COG2897 SseA Rhodanese-related 31.8 1.2E+02 0.0026 25.7 5.2 58 38-95 202-265 (285)
387 PLN02238 hypoxanthine phosphor 31.7 1.4E+02 0.0031 23.4 5.4 40 38-78 10-50 (189)
388 TIGR00260 thrC threonine synth 31.7 2.4E+02 0.0052 24.2 7.3 88 30-123 40-130 (328)
389 TIGR01101 V_ATP_synt_F vacuola 31.7 1.9E+02 0.0042 20.6 8.6 78 63-148 4-94 (115)
390 PRK08776 cystathionine gamma-s 31.7 3.8E+02 0.0082 24.0 9.6 56 61-118 96-152 (405)
391 PRK14185 bifunctional 5,10-met 31.6 3.3E+02 0.0071 23.2 8.4 80 43-122 11-100 (293)
392 PRK02228 V-type ATP synthase s 31.3 1.8E+02 0.0039 20.1 6.8 76 66-147 2-79 (100)
393 PF02353 CMAS: Mycolic acid cy 31.3 1.7E+02 0.0037 24.5 6.1 60 48-111 47-109 (273)
394 PRK08813 threonine dehydratase 31.2 3.6E+02 0.0079 23.6 9.8 55 69-123 85-139 (349)
395 PRK06110 hypothetical protein; 31.1 3.4E+02 0.0074 23.3 10.2 58 69-126 74-131 (322)
396 PRK07768 long-chain-fatty-acid 31.0 4.2E+02 0.0092 24.3 10.2 80 38-120 170-255 (545)
397 PRK09177 xanthine-guanine phos 31.0 1.7E+02 0.0037 22.1 5.5 39 38-78 8-46 (156)
398 cd08281 liver_ADH_like1 Zinc-d 31.0 3.3E+02 0.0071 23.7 8.2 57 58-118 186-243 (371)
399 PF01276 OKR_DC_1: Orn/Lys/Arg 30.9 2.2E+02 0.0048 25.6 7.0 70 61-133 103-194 (417)
400 KOG0633 Histidinol phosphate a 30.8 45 0.00098 27.7 2.5 67 54-120 100-169 (375)
401 COG3887 Predicted signaling pr 30.8 1.6E+02 0.0035 27.7 6.1 89 21-110 286-390 (655)
402 PRK11493 sseA 3-mercaptopyruva 30.7 1.2E+02 0.0026 25.4 5.2 48 48-95 71-120 (281)
403 PLN00020 ribulose bisphosphate 30.7 2.9E+02 0.0062 24.7 7.4 73 47-119 130-220 (413)
404 PF05114 DUF692: Protein of un 30.7 97 0.0021 26.0 4.5 55 6-60 216-271 (274)
405 PRK11823 DNA repair protein Ra 30.6 4.2E+02 0.0091 24.1 9.0 53 59-111 75-131 (446)
406 PRK05967 cystathionine beta-ly 30.3 4E+02 0.0086 23.8 10.5 12 61-72 100-111 (395)
407 PRK08197 threonine synthase; V 30.1 3E+02 0.0065 24.5 7.8 88 29-122 95-184 (394)
408 PF00154 RecA: recA bacterial 30.0 3.2E+02 0.0068 23.7 7.5 132 16-150 3-142 (322)
409 COG1648 CysG Siroheme synthase 29.9 2.9E+02 0.0063 22.1 11.0 68 64-133 12-94 (210)
410 PRK11070 ssDNA exonuclease Rec 29.9 4.9E+02 0.011 24.7 10.5 99 40-148 50-160 (575)
411 PRK09629 bifunctional thiosulf 29.9 1.3E+02 0.0028 28.6 5.7 43 50-92 209-251 (610)
412 PRK07309 aromatic amino acid a 29.6 3.9E+02 0.0085 23.5 12.7 19 196-214 243-261 (391)
413 PF04122 CW_binding_2: Putativ 29.6 1.7E+02 0.0038 19.5 7.8 66 46-114 9-75 (92)
414 PRK02842 light-independent pro 29.6 4.2E+02 0.0091 23.9 10.9 68 63-130 289-357 (427)
415 TIGR02370 pyl_corrinoid methyl 29.6 2.8E+02 0.006 21.9 6.8 55 225-279 86-143 (197)
416 PRK05942 aspartate aminotransf 29.5 3.9E+02 0.0085 23.5 14.3 24 193-216 246-269 (394)
417 TIGR03877 thermo_KaiC_1 KaiC d 29.5 1.7E+02 0.0037 23.7 5.8 54 58-111 15-72 (237)
418 PF00667 FAD_binding_1: FAD bi 29.5 58 0.0013 26.1 3.0 29 60-88 41-69 (219)
419 PRK02991 D-serine dehydratase; 29.1 3.3E+02 0.0072 24.8 7.9 56 69-124 161-216 (441)
420 cd02069 methionine_synthase_B1 29.0 3E+02 0.0066 22.0 12.4 100 36-135 51-166 (213)
421 PRK09028 cystathionine beta-ly 29.0 4.2E+02 0.0091 23.6 10.5 9 199-207 217-225 (394)
422 PF02254 TrkA_N: TrkA-N domain 29.0 1E+02 0.0022 21.4 3.9 60 56-117 55-115 (116)
423 PRK15400 lysine decarboxylase 28.9 2.2E+02 0.0048 27.7 7.0 60 61-123 232-310 (714)
424 COG0436 Aspartate/tyrosine/aro 28.9 4.2E+02 0.0091 23.6 13.9 55 61-119 110-171 (393)
425 TIGR02372 4_coum_CoA_lig 4-cou 28.7 4.1E+02 0.009 23.5 13.0 109 11-125 77-198 (386)
426 TIGR01279 DPOR_bchN light-inde 28.5 4.3E+02 0.0094 23.6 10.5 67 47-119 284-351 (407)
427 PRK07048 serine/threonine dehy 28.2 3.8E+02 0.0083 22.9 9.7 51 71-121 78-128 (321)
428 TIGR01124 ilvA_2Cterm threonin 28.1 4.9E+02 0.011 24.1 9.5 93 25-122 28-122 (499)
429 PRK08133 O-succinylhomoserine 28.1 4.3E+02 0.0092 23.4 9.9 15 105-119 119-133 (390)
430 TIGR00623 sula cell division i 28.0 2.4E+02 0.0053 21.7 5.8 79 39-118 34-117 (168)
431 PRK10083 putative oxidoreducta 28.0 3.4E+02 0.0074 23.1 7.7 59 58-119 155-214 (339)
432 TIGR01203 HGPRTase hypoxanthin 27.9 2E+02 0.0044 21.9 5.6 43 40-83 3-46 (166)
433 cd01974 Nitrogenase_MoFe_beta 27.7 4.6E+02 0.01 23.7 10.5 30 63-93 302-331 (435)
434 PRK04870 histidinol-phosphate 27.7 2.5E+02 0.0053 24.3 6.8 54 62-118 103-160 (356)
435 PF04023 FeoA: FeoA domain; I 27.7 79 0.0017 20.0 2.9 23 50-72 22-44 (74)
436 TIGR00715 precor6x_red precorr 27.6 3.3E+02 0.0071 22.6 7.1 54 64-120 150-206 (256)
437 cd03466 Nitrogenase_NifN_2 Nit 27.5 4.3E+02 0.0093 23.8 8.4 66 63-129 299-368 (429)
438 PRK07445 O-succinylbenzoic aci 27.5 4.6E+02 0.01 23.6 9.1 77 202-279 19-100 (452)
439 PRK08246 threonine dehydratase 27.5 3.9E+02 0.0085 22.8 9.7 59 63-122 67-125 (310)
440 PF08845 SymE_toxin: Toxin Sym 27.2 72 0.0016 19.5 2.4 21 53-73 30-50 (57)
441 cd01529 4RHOD_Repeats Member o 27.1 2E+02 0.0042 19.2 6.1 49 39-90 34-82 (96)
442 PRK07334 threonine dehydratase 27.0 4.6E+02 0.0099 23.4 9.1 51 72-122 78-128 (403)
443 cd08246 crotonyl_coA_red croto 26.9 4.3E+02 0.0094 23.1 8.7 56 59-117 189-244 (393)
444 PRK07671 cystathionine beta-ly 26.8 4.2E+02 0.0091 23.3 8.1 9 62-70 86-94 (377)
445 PF03790 KNOX1: KNOX1 domain ; 26.7 61 0.0013 18.7 1.8 19 72-90 11-29 (45)
446 TIGR01415 trpB_rel pyridoxal-p 26.5 4.8E+02 0.01 23.5 10.3 88 30-122 86-178 (419)
447 PF07994 NAD_binding_5: Myo-in 26.5 4.1E+02 0.0088 22.7 9.0 71 41-113 127-227 (295)
448 PRK01395 V-type ATP synthase s 26.5 2.3E+02 0.005 19.8 5.8 76 66-148 5-80 (104)
449 PF12646 DUF3783: Domain of un 26.4 1.6E+02 0.0034 17.9 3.9 32 48-80 13-44 (58)
450 cd01520 RHOD_YbbB Member of th 26.3 2.5E+02 0.0053 20.1 5.6 39 59-97 81-120 (128)
451 PRK00011 glyA serine hydroxyme 26.3 2.8E+02 0.0061 24.6 7.1 58 61-118 108-172 (416)
452 TIGR02801 tolR TolR protein. T 26.2 1.9E+02 0.0042 20.8 5.0 34 18-51 82-115 (129)
453 cd01017 AdcA Metal binding pro 26.1 3.9E+02 0.0085 22.3 9.6 86 41-128 147-237 (282)
454 PF07538 ChW: Clostridial hydr 25.9 45 0.00098 18.1 1.2 11 191-201 16-26 (36)
455 cd06451 AGAT_like Alanine-glyo 25.9 4.3E+02 0.0092 22.7 10.8 56 61-117 71-130 (356)
456 PF02606 LpxK: Tetraacyldisacc 25.9 4.4E+02 0.0095 22.8 12.2 74 48-124 53-141 (326)
457 PRK10537 voltage-gated potassi 25.9 1.4E+02 0.0031 26.6 4.9 67 55-122 294-360 (393)
458 TIGR01284 alt_nitrog_alph nitr 25.8 5.1E+02 0.011 23.6 10.5 59 63-121 324-383 (457)
459 PRK09880 L-idonate 5-dehydroge 25.7 4.2E+02 0.009 22.7 7.9 58 56-117 162-220 (343)
460 cd06502 TA_like Low-specificit 25.5 4.2E+02 0.009 22.5 7.9 58 61-118 68-134 (338)
461 cd02070 corrinoid_protein_B12- 25.5 3.4E+02 0.0073 21.4 12.3 99 36-134 47-159 (201)
462 PRK05205 bifunctional pyrimidi 25.5 3E+02 0.0064 21.2 6.2 42 39-81 6-49 (176)
463 PRK05613 O-acetylhomoserine am 25.4 5.1E+02 0.011 23.5 10.0 57 61-118 105-162 (437)
464 TIGR02991 ectoine_eutB ectoine 25.4 4.3E+02 0.0094 22.6 9.8 51 72-122 74-124 (317)
465 COG1798 DPH5 Diphthamide biosy 25.3 4E+02 0.0086 22.1 7.0 62 9-70 140-204 (260)
466 COG2897 SseA Rhodanese-related 25.2 1.6E+02 0.0035 24.9 4.8 48 50-97 76-125 (285)
467 TIGR02981 phageshock_pspE phag 25.2 2.3E+02 0.0051 19.4 5.7 50 38-94 39-88 (101)
468 PRK14057 epimerase; Provisiona 25.1 4E+02 0.0087 22.1 10.3 63 53-118 91-163 (254)
469 PRK13237 tyrosine phenol-lyase 24.8 5.5E+02 0.012 23.6 10.7 69 39-111 77-174 (460)
470 PRK15481 transcriptional regul 24.8 4.8E+02 0.011 23.3 8.3 52 222-278 163-218 (431)
471 cd06453 SufS_like Cysteine des 24.7 4.6E+02 0.0099 22.7 9.6 16 259-274 318-333 (373)
472 PF14606 Lipase_GDSL_3: GDSL-l 24.6 2.5E+02 0.0054 21.9 5.4 48 15-62 79-137 (178)
473 PTZ00175 diphthine synthase; P 24.5 4.2E+02 0.0091 22.2 7.2 63 10-72 141-222 (270)
474 PRK06260 threonine synthase; V 24.1 4.3E+02 0.0093 23.5 7.7 88 30-123 84-174 (397)
475 cd08230 glucose_DH Glucose deh 24.1 4.7E+02 0.01 22.5 8.4 55 60-116 169-224 (355)
476 KOG3938 RGS-GAIP interacting p 24.1 2.7E+02 0.0058 23.3 5.6 49 184-232 51-99 (334)
477 TIGR01686 FkbH FkbH-like domai 24.0 4.6E+02 0.01 22.4 8.0 80 40-123 27-115 (320)
478 PRK07671 cystathionine beta-ly 23.5 5.1E+02 0.011 22.8 10.0 73 49-125 52-127 (377)
479 PF06745 KaiC: KaiC; InterPro 23.4 1.8E+02 0.0038 23.3 4.8 55 58-112 13-72 (226)
480 COG2230 Cfa Cyclopropane fatty 23.3 4.5E+02 0.0097 22.3 7.1 67 32-104 43-109 (283)
481 PTZ00433 tyrosine aminotransfe 23.2 5.3E+02 0.012 22.9 9.9 53 61-117 125-183 (412)
482 TIGR01668 YqeG_hyp_ppase HAD s 23.1 3.4E+02 0.0074 20.6 8.7 108 9-121 5-118 (170)
483 PRK12342 hypothetical protein; 23.0 4.4E+02 0.0095 21.9 7.0 82 36-120 27-118 (254)
484 PF14552 Tautomerase_2: Tautom 23.0 87 0.0019 20.8 2.4 37 40-76 40-77 (82)
485 PRK10874 cysteine sulfinate de 22.6 5.3E+02 0.012 22.7 8.3 16 259-274 337-352 (401)
486 PLN02855 Bifunctional selenocy 22.6 5.5E+02 0.012 22.8 8.5 12 62-73 120-131 (424)
487 TIGR03301 PhnW-AepZ 2-aminoeth 22.6 4.9E+02 0.011 22.2 8.9 25 187-211 180-207 (355)
488 PF01041 DegT_DnrJ_EryC1: DegT 22.5 5.2E+02 0.011 22.5 8.4 65 218-287 59-134 (363)
489 PRK14194 bifunctional 5,10-met 22.5 5E+02 0.011 22.3 8.7 79 44-122 15-102 (301)
490 PF00682 HMGL-like: HMGL-like 22.4 4.1E+02 0.0088 21.4 6.8 71 16-92 139-210 (237)
491 PRK06608 threonine dehydratase 22.4 5.2E+02 0.011 22.4 8.5 89 27-119 36-126 (338)
492 PF08541 ACP_syn_III_C: 3-Oxoa 22.4 92 0.002 20.6 2.5 22 50-71 55-76 (90)
493 PF04014 Antitoxin-MazE: Antid 22.4 1.2E+02 0.0026 17.3 2.7 18 56-73 16-33 (47)
494 PF12689 Acid_PPase: Acid Phos 22.4 3.7E+02 0.008 20.7 6.9 86 32-124 35-137 (169)
495 PF05621 TniB: Bacterial TniB 22.4 2.3E+02 0.0051 24.2 5.3 53 66-120 98-154 (302)
496 COG0436 Aspartate/tyrosine/aro 22.4 5.6E+02 0.012 22.8 10.7 74 43-118 65-141 (393)
497 PLN02271 serine hydroxymethylt 22.4 4.7E+02 0.01 24.8 7.6 60 61-120 235-307 (586)
498 PRK06234 methionine gamma-lyas 22.3 5.6E+02 0.012 22.8 12.2 56 61-118 100-156 (400)
499 COG2746 Aminoglycoside N3'-ace 22.2 1.1E+02 0.0023 25.2 3.1 26 49-74 14-39 (251)
500 CHL00195 ycf46 Ycf46; Provisio 22.2 6.3E+02 0.014 23.4 8.6 71 48-119 243-326 (489)
No 1
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-45 Score=309.73 Aligned_cols=288 Identities=22% Similarity=0.264 Sum_probs=250.1
Q ss_pred cccCCCCCCCCHHHHHHHHhhhcCCccEEEE--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 5 IRCSANYVPLTPISFLERSAVVYRDRPSVVY--GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
..+..|....++.+.++..+++.||+.|.++ ++.++||+||.+.++++|.+|..+|+++||+|++.+||+.+|+...+
T Consensus 41 g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~l 120 (596)
T KOG1177|consen 41 GCSQIPLDSETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQL 120 (596)
T ss_pred CCCCCCcccccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHH
Confidence 4456788999999999999999999999887 45679999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch-----hhHHHHHHHhcc---------ccCCCCceEEccCC
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-----PIAQGAFEILSK---------TSAKLPLLVLVPEC 148 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~---------~~~~~~~i~~~~~~ 148 (301)
||+++|.+.++++|.+..+++...|+..+++++|+...+. +...++..+... ..+.+++++..+++
T Consensus 121 A~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed 200 (596)
T KOG1177|consen 121 ACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADED 200 (596)
T ss_pred HHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCC
Confidence 9999999999999999999999999999999999986544 333443333221 11455666666632
Q ss_pred CCCCcccccCCCCccHHHHHhhcccc------ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCC
Q 046637 149 GEPVSTVASSSGNLEYESLLAIGKLR------EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMG 222 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~ 222 (301)
. ...|...++|++...... .......+++++.|.|||||||.|||+.+||.|++++.......++++
T Consensus 201 ~-------~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~ 273 (596)
T KOG1177|consen 201 H-------PLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYN 273 (596)
T ss_pred C-------cCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcC
Confidence 2 235667888888776665 234567789999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccchhhhhhH-HHHHHHHhCCeEEee-CCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccCC
Q 046637 223 LMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299 (301)
Q Consensus 223 ~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~~ 299 (301)
++.++.+..|+||++|.. .++.+++.|+++|++ +.|+|.+.+++|+++|||.++.+|+|+..|++.++..+.++++.
T Consensus 274 e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~l 352 (596)
T KOG1177|consen 274 EKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSL 352 (596)
T ss_pred cceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhh
Confidence 999999999999999966 589999999999997 68999999999999999999999999999999999999998764
No 2
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.6e-41 Score=317.26 Aligned_cols=275 Identities=16% Similarity=0.182 Sum_probs=218.7
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCccEEEEC--C---eeeeHHHHHHHHHHHHHHHHhc---CCCCC-----------CEEE
Q 046637 8 SANYVPLTPISFLERSAVVYRDRPSVVYG--D---VQYTWKETHQRCVKLASGLAHL---GISPG-----------DVVA 68 (301)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~--~---~~~Ty~el~~~~~~la~~L~~~---gv~~g-----------~~V~ 68 (301)
..-+...++.++|.+.++++||++|+++. + +.+||+|+.+++.++|++|.++ |+++| |+|+
T Consensus 55 ~~~~~~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~ 134 (746)
T PTZ00342 55 SSLYVYKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLG 134 (746)
T ss_pred ccccccchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEE
Confidence 34455889999999999999999999973 2 6899999999999999999974 99998 9999
Q ss_pred EEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCC
Q 046637 69 ALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPEC 148 (301)
Q Consensus 69 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 148 (301)
|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.+....++ .++.+++++..
T Consensus 135 i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~----~l~~ii~~~~~ 210 (746)
T PTZ00342 135 LYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELP----HLKKLIILDTL 210 (746)
T ss_pred EEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCC----CceEEEEECCC
Confidence 99999999999999999999999999999999999999999999999998766666555544444 57788887653
Q ss_pred CCCCc----------------cccc-------------------------------------------CCCCccHHHHHh
Q 046637 149 GEPVS----------------TVAS-------------------------------------------SSGNLEYESLLA 169 (301)
Q Consensus 149 ~~~~~----------------~~~~-------------------------------------------~~~~~~~~~~~~ 169 (301)
..... .... ......|+++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 290 (746)
T PTZ00342 211 IKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTK 290 (746)
T ss_pred CcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHh
Confidence 21000 0000 000011233322
Q ss_pred hccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh--hCCCCCEEEEeccchhhhhhHHHHHHHH
Q 046637 170 IGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN--EMGLMPTYLWCVPMFHCNGWCLTWAVAA 247 (301)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~l~~~p~~h~~g~~~~~~~l~ 247 (301)
............++++++|+|||||||.||||++||+|+++++....... .....+++++.+|++|++++...+.+++
T Consensus 291 ~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~ 370 (746)
T PTZ00342 291 NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFM 370 (746)
T ss_pred hcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 21111112235678999999999999999999999999998876654321 1235689999999999999987788899
Q ss_pred hCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 248 QGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 248 ~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
.|+++++.+. ++..+++.|++++||+++++|.++++|++
T Consensus 371 ~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~ 409 (746)
T PTZ00342 371 LGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYT 409 (746)
T ss_pred cCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHH
Confidence 9999998875 89999999999999999999999999975
No 3
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.2e-41 Score=305.72 Aligned_cols=279 Identities=30% Similarity=0.401 Sum_probs=231.9
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCccEEEECCee--eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhh
Q 046637 8 SANYVPLTPISFLERSAVVYRDRPSVVYGDVQ--YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVP 85 (301)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~--~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~ 85 (301)
.......++.+++++.++.+|+++|+++.+.. +||+||.++++++|..|++.|+++||+|+|+++|++++++++|||+
T Consensus 5 ~~~~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~ 84 (534)
T COG0318 5 MRMTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAAL 84 (534)
T ss_pred ccccccccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 44566789999999999999999999998877 9999999999999999999999999999999999999999999999
Q ss_pred hccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHH
Q 046637 86 MAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYE 165 (301)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 165 (301)
++|++++|++|.++.+++.++++.+++++++++.+............+ ....+........... ..++
T Consensus 85 ~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~ 152 (534)
T COG0318 85 RAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALP----VVLVVLLVGDADDRLP--------ITLE 152 (534)
T ss_pred hcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCC----cceEEEeccccccccc--------ccHH
Confidence 999999999999999999999999999999999885555444443221 2222222222211000 2455
Q ss_pred HHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh--CCCCCEEEEeccchhhhhhHHH
Q 046637 166 SLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE--MGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 166 ~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
+........ .......++++++|+|||||||.||||++||.|+..+.......+. +..+|++++++|+||.+|+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~ 232 (534)
T COG0318 153 ALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVG 232 (534)
T ss_pred HHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHH
Confidence 553332222 1112267899999999999999999999999999999888888888 8999999999999999999975
Q ss_pred HHH-HHhCCeEEeeC--CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 243 WAV-AAQGGTNVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 243 ~~~-l~~g~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
+.+ ++.|+++++.+ .|+++.++..+.++++|++.++|+++..|++++...+.++++
T Consensus 233 ~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~ 291 (534)
T COG0318 233 LLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSS 291 (534)
T ss_pred HHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCcccccc
Confidence 554 88899999987 599999999999999999999999999999998888776543
No 4
>PLN02736 long-chain acyl-CoA synthetase
Probab=100.00 E-value=8.7e-41 Score=312.09 Aligned_cols=274 Identities=21% Similarity=0.244 Sum_probs=224.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEE----CC-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHH
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVY----GD-----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYEL 80 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~----~~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~ 80 (301)
+....++.++|++.++++||++|+.+ .+ +.+||+|+.++++++|++|.++|+++||+|+|+++|+++|+++
T Consensus 40 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~ 119 (651)
T PLN02736 40 HPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIV 119 (651)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHH
Confidence 34456899999999999999999953 11 4699999999999999999999999999999999999999999
Q ss_pred HHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcc--cccC
Q 046637 81 HFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVST--VASS 158 (301)
Q Consensus 81 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~ 158 (301)
++||+++|++++|+++..+.+++.+++++++++++|++.+....+.......+ .++.++.++........ ....
T Consensus 120 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~----~l~~ii~~~~~~~~~~~~~~~~~ 195 (651)
T PLN02736 120 DHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIP----SVRLIVVVGGADEPLPSLPSGTG 195 (651)
T ss_pred HHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCC----CceEEEEECCCchhhhhhhccCC
Confidence 99999999999999999999999999999999999998776655554443333 45666665432110000 0001
Q ss_pred CCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhh
Q 046637 159 SGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCN 237 (301)
Q Consensus 159 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~ 237 (301)
.....++++....... .......++++++|+|||||||.||||++||.+++.++......+++.++|++++.+|++|.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~ 275 (651)
T PLN02736 196 VEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIY 275 (651)
T ss_pred cEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHH
Confidence 1234677766544322 112235678999999999999999999999999999888888788889999999999999999
Q ss_pred hhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 238 GWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 238 g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
|+...+.++..|+++++.+. ++..+++.++++++|+++++|++++.+++.
T Consensus 276 ~~~~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~ 325 (651)
T PLN02736 276 ERVNQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDG 325 (651)
T ss_pred HHHHHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHH
Confidence 98888888999999988764 889999999999999999999999988753
No 5
>PLN02614 long-chain acyl-CoA synthetase
Probab=100.00 E-value=1.8e-40 Score=309.71 Aligned_cols=271 Identities=19% Similarity=0.223 Sum_probs=213.0
Q ss_pred CCCHHHHHHHHhhhcCCccEEEEC----C-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYG----D-----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFG 83 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 83 (301)
..++.++|++.++++||++|+.+. + +++||+|+.++++++|.+|.++|+++||+|+|+++|+++|+++++|
T Consensus 44 ~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA 123 (666)
T PLN02614 44 MDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEA 123 (666)
T ss_pred CCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 348999999999999999999842 1 3589999999999999999999999999999999999999999999
Q ss_pred hhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccc--cCCCC
Q 046637 84 VPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVA--SSSGN 161 (301)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~ 161 (301)
|+++|++++|+++.++.+++.+++++++++++|++.+....+ ....+.....++.++.++.......... .....
T Consensus 124 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~---~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 200 (666)
T PLN02614 124 CNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISEL---FKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVI 200 (666)
T ss_pred HHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHH---HHhcccccccceEEEEeCCCChHHhhhhhhcCcEE
Confidence 999999999999999999999999999999999987543322 2222211112456666543210000000 00112
Q ss_pred ccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh-----hCCCCCEEEEeccchh
Q 046637 162 LEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN-----EMGLMPTYLWCVPMFH 235 (301)
Q Consensus 162 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~h 235 (301)
..++++....... .......++++++|+|||||||.||||++||.|++.++......+ .+..+|++++.+|++|
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H 280 (666)
T PLN02614 201 YAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAH 280 (666)
T ss_pred EEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHH
Confidence 4567665543221 111234678999999999999999999999999988776654433 4678899999999999
Q ss_pred hhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 236 CNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 236 ~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
++++...+.++..|+++++.+ +++..+++.+++++||+++++|++++.+++
T Consensus 281 ~~~~~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~ 331 (666)
T PLN02614 281 IFDRVIEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYS 331 (666)
T ss_pred HHHHHHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHH
Confidence 999876666788999988875 589999999999999999999999999875
No 6
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-40 Score=295.40 Aligned_cols=290 Identities=39% Similarity=0.572 Sum_probs=236.8
Q ss_pred CcccccCCCCCCCCHHHHHHHHhhhcCCc-cEEEECC---eeeeHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEcCCCH
Q 046637 2 EGMIRCSANYVPLTPISFLERSAVVYRDR-PSVVYGD---VQYTWKETHQRCVKLASGLAHLG--ISPGDVVAALAPNVP 75 (301)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~al~~~~---~~~Ty~el~~~~~~la~~L~~~g--v~~g~~V~i~~~n~~ 75 (301)
+.+..++.+..+.+....+.+.+..++++ +.+++.. +.+||+|+..++.++|..|.++| +++||+|++++||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~ 83 (537)
T KOG1176|consen 4 EKLWKGPANNTPLTPITFLGRPAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTP 83 (537)
T ss_pred cccccCcccCccccccccccccccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCH
Confidence 44566667777777777777777666666 8888755 89999999999999999999875 889999999999999
Q ss_pred HHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCccc
Q 046637 76 AMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTV 155 (301)
Q Consensus 76 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 155 (301)
++.++++||...|++..+++|.+.+.++...++.++++++|++.+....+.+....+. ..++++....... ..
T Consensus 84 ~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~------~~i~~l~~~~~~~-~~ 156 (537)
T KOG1176|consen 84 EFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA------LKIIVLTGDEGVI-SI 156 (537)
T ss_pred HHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC------CceEEEecccCcc-cc
Confidence 9999999999999999999999999999999999999999999999988877766533 4455554431110 00
Q ss_pred ccCCCCcc-HHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccch
Q 046637 156 ASSSGNLE-YESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMF 234 (301)
Q Consensus 156 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~ 234 (301)
........ +.++........ ......+++++|+|||||||.||||++||++++.+..+....+.+...++.++.+|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~ 235 (537)
T KOG1176|consen 157 SDLVEDLDAFEDLMPEGLPDG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLF 235 (537)
T ss_pred ccccccccchhhccccCCCcc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHH
Confidence 00011111 444444333333 4456679999999999999999999999999999888877788888899999999999
Q ss_pred hhhhhHHHHH-HHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccCC
Q 046637 235 HCNGWCLTWA-VAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299 (301)
Q Consensus 235 h~~g~~~~~~-~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~~ 299 (301)
|++|+...+. ++..|+++++.+.|++..+++.|++|++|+++++|+++..|++.+....++|++.
T Consensus 236 H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl 301 (537)
T KOG1176|consen 236 HIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSL 301 (537)
T ss_pred HHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCcc
Confidence 9999998776 4555666777778899999999999999999999999999999998888888875
No 7
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=100.00 E-value=3.1e-40 Score=308.21 Aligned_cols=271 Identities=20% Similarity=0.288 Sum_probs=215.5
Q ss_pred CCCHHHHHHHHhhhcCCccEEEEC-------C--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYG-------D--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFG 83 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~-------~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 83 (301)
..+++++|++.++++|+++|+.+. + +++||+|+.++++++|.+|.++|+++||+|+|+++|+++|+++++|
T Consensus 42 ~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA 121 (660)
T PLN02861 42 IDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (660)
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 458899999999999999999741 1 4799999999999999999999999999999999999999999999
Q ss_pred hhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcc--cccCCCC
Q 046637 84 VPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVST--VASSSGN 161 (301)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 161 (301)
|+++|++++|+++.++.+++.+++++++++++|++++....+.......+ ..++.++.+++....... .......
T Consensus 122 ~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~---~~l~~ii~~~~~~~~~~~~~~~~~~~~ 198 (660)
T PLN02861 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCS---SNLKTIVSFGDVSSEQKEEAEELGVSC 198 (660)
T ss_pred HHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCC---CCCEEEEEECCCChhhhhhhhcCCcEE
Confidence 99999999999999999999999999999999998765443333222211 135666666532110000 0001112
Q ss_pred ccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh-----CCCCCEEEEeccchhh
Q 046637 162 LEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE-----MGLMPTYLWCVPMFHC 236 (301)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-----~~~~~~~l~~~p~~h~ 236 (301)
..|+++..............++++++|+|||||||.||||++||.+++.++......+. +..+|++++.+|++|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~ 278 (660)
T PLN02861 199 FSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHV 278 (660)
T ss_pred EEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHH
Confidence 45666655432221222346789999999999999999999999999987766554433 4678999999999999
Q ss_pred hhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 237 NGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 237 ~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
+|+...+.++..|+++++.+ +++..+++.|++++||+++++|++++.|++
T Consensus 279 ~~~~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~ 328 (660)
T PLN02861 279 YDQVIETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYT 328 (660)
T ss_pred HHHHHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHH
Confidence 99876666899999998874 689999999999999999999999999874
No 8
>PRK07788 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.5e-39 Score=298.77 Aligned_cols=267 Identities=24% Similarity=0.254 Sum_probs=224.4
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
.++.++|++.++++||++|++++++.+||+||.+.++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~ 128 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIIL 128 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEECCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEE
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccc
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL 173 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
+++.++.+++.++++.++++++|++.+....+.+...... .+..++....... ....+...++++......
T Consensus 129 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 199 (549)
T PRK07788 129 LNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLG----RLRAWGGNPDDDE-----PSGSTDETLDDLIAGSST 199 (549)
T ss_pred eCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccc----cceEEEEecCccc-----cCCcCcccHHHHhcCCCC
Confidence 9999999999999999999999999876655544322111 2222222111110 111344667777654332
Q ss_pred cccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEE
Q 046637 174 REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNV 253 (301)
Q Consensus 174 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v 253 (301)
.. .....++.++++|||||||.||||.++|.++..+.......+.+..++++++..|++|.+|+...+.++..|++++
T Consensus 200 ~~--~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v 277 (549)
T PRK07788 200 AP--LPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVV 277 (549)
T ss_pred CC--CCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEE
Confidence 21 1234568899999999999999999999999988887777888889999999999999999987788899999999
Q ss_pred eeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCC
Q 046637 254 CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291 (301)
Q Consensus 254 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 291 (301)
+.+.+++..+++.++++++|++.++|++++.|++....
T Consensus 278 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 315 (549)
T PRK07788 278 LRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPE 315 (549)
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccc
Confidence 99889999999999999999999999999999987654
No 9
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=100.00 E-value=9.5e-40 Score=300.70 Aligned_cols=275 Identities=25% Similarity=0.256 Sum_probs=222.1
Q ss_pred CCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 9 ANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
++.++.++.++|++.++++|+++|+++.++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~G 81 (563)
T PLN02860 2 ANHSQAHICQCLTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAG 81 (563)
T ss_pred cchhhhHHHHHHHHHHHhcCCceEEecCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhcc
Confidence 56788999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHH-HhccccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFE-ILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
++++|+++.++.+++.+++++++++++++++........... ..+ .++.++..++..... ..........+++
T Consensus 82 av~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~--~~~~~~~~~~~~~ 155 (563)
T PLN02860 82 GIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLP----SLMWQVFLESPSSSV--FIFLNSFLTTEML 155 (563)
T ss_pred EEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCC----ceeEEEEecCccccc--ccchhhccccchh
Confidence 999999999999999999999999999998765433333211 111 233344433321100 0000001111111
Q ss_pred Hhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHH
Q 046637 168 LAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVA 246 (301)
Q Consensus 168 ~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l 246 (301)
....... .......++++++|+|||||||.||||+++|.++..+.......+++.++|+++...|++|.+|+...+.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l 235 (563)
T PLN02860 156 KQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAML 235 (563)
T ss_pred ccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHH
Confidence 1111011 111234578999999999999999999999999988777777778888999999999999999988888999
Q ss_pred HhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 247 AQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 247 ~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
..|+++++.+.+++..+++.++++++|++.++|+++..|++..
T Consensus 236 ~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 278 (563)
T PLN02860 236 MVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLT 278 (563)
T ss_pred HcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998764
No 10
>PLN03102 acyl-activating enzyme; Provisional
Probab=100.00 E-value=1.5e-38 Score=293.50 Aligned_cols=282 Identities=50% Similarity=0.886 Sum_probs=224.7
Q ss_pred cCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 7 CSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
+.+.-++.++.++|++.++.+||++|+++.++++||+||.++++++|..|.++|+++||+|+|+++|++++++++|||++
T Consensus 7 ~~~~~~~~~~~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~ 86 (579)
T PLN03102 7 CEANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPM 86 (579)
T ss_pred CccccccccHHHHHHHHHHhCCCCeEEEECCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence 33444567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccC-CCCceEEccCCCCCCcccccCCCCccHH
Q 046637 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSA-KLPLLVLVPECGEPVSTVASSSGNLEYE 165 (301)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 165 (301)
+|++++|++|..+.+++.++++.++++++|++++....+.+.......... ....++.++....... .......+.
T Consensus 87 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 163 (579)
T PLN03102 87 AGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKR---PSSEELDYE 163 (579)
T ss_pred cCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccC---CcccccCHH
Confidence 999999999999999999999999999999988777666555443321100 1123444443211100 001224455
Q ss_pred HHHhhcccccc-----CCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH
Q 046637 166 SLLAIGKLREV-----RRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 166 ~~~~~~~~~~~-----~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~ 240 (301)
++......... .....++++++|+|||||||.||||+++|.++..........+.+...+++++.+|++|.+|+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~ 243 (579)
T PLN03102 164 CLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWT 243 (579)
T ss_pred HHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchh
Confidence 55543322111 1124568999999999999999999999999765554444455667788999999999999988
Q ss_pred HHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCC
Q 046637 241 LTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291 (301)
Q Consensus 241 ~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 291 (301)
..+.++..|+++++.+.+++..+++.|+++++|++.++|+++..|++....
T Consensus 244 ~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 294 (579)
T PLN03102 244 FTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSL 294 (579)
T ss_pred HHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccc
Confidence 778889999999999888999999999999999999999999999986543
No 11
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=100.00 E-value=4.5e-39 Score=284.95 Aligned_cols=265 Identities=22% Similarity=0.296 Sum_probs=217.7
Q ss_pred HHHHHhhh-cCCccEEEECC-----eeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 19 FLERSAVV-YRDRPSVVYGD-----VQYTWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 19 ~l~~~~~~-~~~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
.+.+..+. .+|+.|+++.+ +.+||+||.+.+.++|..|++ .|+ +||||++++||.+|.++++|||+++|+++
T Consensus 14 ~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~ 92 (528)
T COG0365 14 ALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIP 92 (528)
T ss_pred hhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 45665553 46899999864 689999999999999999987 578 99999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHH--HHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHh
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGA--FEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLA 169 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (301)
+|+.+.++++.+...+++++++++|+++......+.. ....... +..+++..... ..|.++.+
T Consensus 93 ~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~---~~~~iv~~r~~------------~~~~~~~~ 157 (528)
T COG0365 93 AVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAV---LSSVVVVPRLG------------LWYDEAVE 157 (528)
T ss_pred eecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHh---hcceEEecccc------------ccHHHHhh
Confidence 9999999999999999999999999988766543321 1111111 11133333321 56777777
Q ss_pred hccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHH-HHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHH
Q 046637 170 IGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLA-AALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAA 247 (301)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~ 247 (301)
...........+.+++++|+|||||||+||||+++|..++..... ....+.+.++|++.+..++.|++|... ++.+|.
T Consensus 158 ~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~ 237 (528)
T COG0365 158 KASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLA 237 (528)
T ss_pred ccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHh
Confidence 666554344488999999999999999999999999987766554 445677889999999999999999886 899999
Q ss_pred hCCeEEeeCC--C-CHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccCC
Q 046637 248 QGGTNVCQRT--V-NAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299 (301)
Q Consensus 248 ~g~~~v~~~~--~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~~ 299 (301)
.|+++++.+. + +++.+++.|+++++|.++++|+.+++|++....+++|+++.
T Consensus 238 ~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssL 292 (528)
T COG0365 238 SGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSL 292 (528)
T ss_pred cCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhh
Confidence 9999998862 2 49999999999999999999999999999988777888764
No 12
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=100.00 E-value=2e-38 Score=294.06 Aligned_cols=275 Identities=25% Similarity=0.278 Sum_probs=227.2
Q ss_pred ccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhh
Q 046637 6 RCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVP 85 (301)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~ 85 (301)
....+....++.+.|.+.++++|+++|++++++.+||+||.+.++++|..|.+.|+++|++|+++++|++++++++|||+
T Consensus 29 ~~~~~~~~~tl~~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~ 108 (600)
T PRK08279 29 ALITPDSKRSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLA 108 (600)
T ss_pred cccCCCCcccHHHHHHHHHHhCCCCcEEEeCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 34455778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHH
Q 046637 86 MAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYE 165 (301)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 165 (301)
++|++++++++..+.+++.++++.++++++|++++....+.+...... ....++..+.... . ....+.
T Consensus 109 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~-------~~~~~~ 176 (600)
T PRK08279 109 KLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLA----RPPRLWVAGGDTL-D-------DPEGYE 176 (600)
T ss_pred hcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhc----ccceEEEecCccc-c-------ccccHH
Confidence 999999999999999999999999999999999877766655544332 2222333222110 0 012233
Q ss_pred HHHhhcccc-----ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH
Q 046637 166 SLLAIGKLR-----EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 166 ~~~~~~~~~-----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~ 240 (301)
++....... ........+++++|+|||||||.||||.+||.++..++......+++.++|++++.+|++|.+|+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~ 256 (600)
T PRK08279 177 DLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGT 256 (600)
T ss_pred HHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHH
Confidence 333221111 112334568999999999999999999999999999988888888999999999999999999987
Q ss_pred H-HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCc
Q 046637 241 L-TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVF 292 (301)
Q Consensus 241 ~-~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 292 (301)
. ++.++..|+++++.+.+++..+++.++++++|++.++|++++.+++.....
T Consensus 257 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~ 309 (600)
T PRK08279 257 VAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKP 309 (600)
T ss_pred HHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCc
Confidence 5 455677888888888999999999999999999999999999998765443
No 13
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=100.00 E-value=1e-38 Score=299.35 Aligned_cols=272 Identities=19% Similarity=0.205 Sum_probs=216.9
Q ss_pred CCCHHHHHHHHhhhcCCccEEEEC------------C-----------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYG------------D-----------VQYTWKETHQRCVKLASGLAHLGISPGDVVAA 69 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~------------~-----------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 69 (301)
-.++.++|++.++++||++|+.+. + +++||+|+.+++.++|.+|.++|+++||+|+|
T Consensus 57 ~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai 136 (696)
T PLN02387 57 ATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAI 136 (696)
T ss_pred CCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 468999999999999999999531 1 24899999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCC
Q 046637 70 LAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECG 149 (301)
Q Consensus 70 ~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 149 (301)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+.+.....+ .++.++.+++..
T Consensus 137 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~----~l~~ii~~~~~~ 212 (696)
T PLN02387 137 FADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLE----TVKRVIYMDDEG 212 (696)
T ss_pred EcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccC----CceEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999998776666555544443 577788876542
Q ss_pred CCCcc---cccCCCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh-hCCCC
Q 046637 150 EPVST---VASSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN-EMGLM 224 (301)
Q Consensus 150 ~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~ 224 (301)
..... .........|.++...+... .......++++++|+|||||||.||||++||.+++.++......+ .+.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~ 292 (696)
T PLN02387 213 VDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKN 292 (696)
T ss_pred chhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCC
Confidence 21000 00011124577766544322 122235679999999999999999999999999998887765543 57889
Q ss_pred CEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCC------C--HHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 225 PTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTV------N--AKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 225 ~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~------~--~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
|++++.+|++|++++...+.++..|+++.+.... + +..+++.+++++||++.++|.+++.+.+.
T Consensus 293 d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~ 364 (696)
T PLN02387 293 DVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDG 364 (696)
T ss_pred CEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHH
Confidence 9999999999999988766677788887764321 1 23466789999999999999999999754
No 14
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=7.5e-38 Score=285.63 Aligned_cols=280 Identities=31% Similarity=0.457 Sum_probs=241.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.+.+.++.++|.+.++.+|+++|+.+.++.+||+||.+.+.++|+.|.+.|+++|++|+++++|++++++++|||+++|+
T Consensus 2 ~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~ 81 (521)
T PRK06187 2 QDYPLTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGA 81 (521)
T ss_pred CcccCCHHHHHHHHHHHCCCceEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHh
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLA 169 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (301)
+++++++..+.+++..+++.+++++++++......+.+.....+ ..++++.+++.... ........+.++..
T Consensus 82 ~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 153 (521)
T PRK06187 82 VLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLP----TVRTVIVEGDGPAA----PLAPEVGEYEELLA 153 (521)
T ss_pred EEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccC----CccEEEEecCcccc----ccccccccHHHHhh
Confidence 99999999999999999999999999999887777666655443 45566666554311 11223355666655
Q ss_pred hccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhC
Q 046637 170 IGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQG 249 (301)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g 249 (301)
.............++++++.|||||||.||++.+||.++..........+++.+++++++..|++|.+++...+.++..|
T Consensus 154 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G 233 (521)
T PRK06187 154 AASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAG 233 (521)
T ss_pred cCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHhC
Confidence 44433333446678899999999999999999999999998888888888999999999999999999988777799999
Q ss_pred CeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 250 GTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 250 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
+++++.+.+++..+++.++++++|.++++|++++.|.+.......+++
T Consensus 234 ~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~ 281 (521)
T PRK06187 234 AKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFS 281 (521)
T ss_pred CEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcc
Confidence 999999888999999999999999999999999999988766444444
No 15
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Probab=100.00 E-value=4.3e-39 Score=285.66 Aligned_cols=275 Identities=23% Similarity=0.234 Sum_probs=230.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECC--------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGD--------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELH 81 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~--------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 81 (301)
.....++++.|.+.+..+|+.+++.... +++||+|+.+++..++.+|.++|+++++.|+|++.|++||+++.
T Consensus 71 ~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~ 150 (691)
T KOG1256|consen 71 FDGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISE 150 (691)
T ss_pred CCCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhH
Confidence 4568899999999999999999998733 68999999999999999999999999999999999999999999
Q ss_pred HHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC-CchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCC-
Q 046637 82 FGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY-QLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSS- 159 (301)
Q Consensus 82 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~- 159 (301)
+||...|.+.|||+..++++.++++++++...++|+|. +....+.+..... ..+.++.+|.++...+.........
T Consensus 151 ~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~--~~~~LK~iI~~~~~~~~~~~~~~~~g 228 (691)
T KOG1256|consen 151 MACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKEND--SLPSLKAIIQLDEPSDELKEKAENNG 228 (691)
T ss_pred HHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccc--cCccceeEEEecCCchhhhhhhhcCC
Confidence 99999999999999999999999999999999999994 3444443333320 1226889999998876544444433
Q ss_pred -CCccHHHHHhhccccccC--CCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHH---HHh---hCCCCCEEEEe
Q 046637 160 -GNLEYESLLAIGKLREVR--RPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAA---LFN---EMGLMPTYLWC 230 (301)
Q Consensus 160 -~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~---~~~~~~~~l~~ 230 (301)
...+|+++.+-+...... ..+.+++.+.|.|||||||+||||++||.|+++.+.... ... ....+|++++.
T Consensus 229 v~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSy 308 (691)
T KOG1256|consen 229 VEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSY 308 (691)
T ss_pred eEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEe
Confidence 357899999988665222 468899999999999999999999999999998655322 111 12236999999
Q ss_pred ccchhhhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 231 VPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 231 ~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
+|+.|++..++-...+..|+.+.+.. .|+..+.+.++..+||.+.++|.+++++.+
T Consensus 309 LPLAHi~er~~~~~~~~~G~~IgF~~-gD~~~l~~dlk~lkPT~f~~VPRVl~riye 364 (691)
T KOG1256|consen 309 LPLAHIFERVVELYTFYIGAKIGFAR-GDILKLTDDLKELKPTVFPGVPRVLERIYE 364 (691)
T ss_pred CcHHHHHHHHHHHhHhhcccEEEEec-CChHHHHHHHHHhCCcEEeccHhHHHHHHH
Confidence 99999999888666778899999887 499999999999999999999999999976
No 16
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=100.00 E-value=6.8e-38 Score=287.58 Aligned_cols=275 Identities=25% Similarity=0.254 Sum_probs=226.9
Q ss_pred CCCCCCCHHHHHHHHhhhcCCccEEEECC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 9 ANYVPLTPISFLERSAVVYRDRPSVVYGD------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
-.|...++.+.|.+.++.+|+++|+++.+ +.+||+||.++++++|..|.+.|+++|++|+++++|++++++++|
T Consensus 19 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~l 98 (547)
T PRK13295 19 GHWHDRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYL 98 (547)
T ss_pred CCCcCCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHH
Confidence 45677899999999999999999999865 899999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch-----hhHHHHHHHhccccCCCCceEEccCCCCCCccccc
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-----PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVAS 157 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 157 (301)
||+++|++++|++|..+.+++.++++.++++++++++... +.+.+...... .+..++.++....
T Consensus 99 a~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------- 167 (547)
T PRK13295 99 ACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELP----ALRHVVVVGGDGA------- 167 (547)
T ss_pred HHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCC----CcceEEEecCCCc-------
Confidence 9999999999999999999999999999999999987642 22222222222 4455555543211
Q ss_pred CCCCccHHHHHhhcc--------ccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEE
Q 046637 158 SSGNLEYESLLAIGK--------LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLW 229 (301)
Q Consensus 158 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~ 229 (301)
..+.++..... .........++++++|+|||||||.||+|.++|.++..++......+++.+++++++
T Consensus 168 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~ 243 (547)
T PRK13295 168 ----DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILM 243 (547)
T ss_pred ----cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 23433332110 001112345689999999999999999999999999988888777888899999999
Q ss_pred eccchhhhhhHH-HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 230 CVPMFHCNGWCL-TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 230 ~~p~~h~~g~~~-~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
..|++|.+|+.. ++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+.......++++
T Consensus 244 ~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~ 313 (547)
T PRK13295 244 ASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSS 313 (547)
T ss_pred ecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCccc
Confidence 999999999764 788899999999999899999999999999999999999999999876655555543
No 17
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=1.1e-37 Score=284.19 Aligned_cols=278 Identities=29% Similarity=0.365 Sum_probs=234.4
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
...++.+.|++.++.+|+++|+.+.++++||+||.+.+.++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 3 ~~~~i~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~ 82 (513)
T PRK07656 3 EWMTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVV 82 (513)
T ss_pred ccccHHHHHHHHHHHCCCCeEEEeCCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+|+++..+.+++..+++.++++++++++.............. .++.++......... .......|.++....
T Consensus 83 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 154 (513)
T PRK07656 83 VPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLP----ALEHVVICETEEDDP----HTEKMKTFTDFLAAG 154 (513)
T ss_pred EecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccC----CccEEEEEcCccccc----CccccccHHHHHhcC
Confidence 999999999999999999999999999887665555443332 445555444332110 011224566666544
Q ss_pred cccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCC
Q 046637 172 KLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGG 250 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~ 250 (301)
..........++++++|+|||||||.||+|.++|.++..........+++.+++++++..|++|.+|+.. ++.++..|+
T Consensus 155 ~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~ 234 (513)
T PRK07656 155 DPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGA 234 (513)
T ss_pred CCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCc
Confidence 3322233467789999999999999999999999999988888888888999999999999999999775 788899999
Q ss_pred eEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 251 TNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 251 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
++++.+.+++..+++.++++++|++.++|.++..|.+.......+++
T Consensus 235 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~ 281 (513)
T PRK07656 235 TILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLS 281 (513)
T ss_pred eEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCcc
Confidence 99998888999999999999999999999999999988766554544
No 18
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=100.00 E-value=2e-38 Score=284.47 Aligned_cols=268 Identities=25% Similarity=0.312 Sum_probs=205.8
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECC----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGD----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
..++...+.+.++.+|+..++.... +.+||+|+.+++..+|.+|...|+.+||+|+|++.|+++|+++.+||+..|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g 94 (613)
T COG1022 15 IHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALG 94 (613)
T ss_pred cccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 4678899999999999988888633 789999999999999999999999779999999999999999999999999
Q ss_pred ceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch-hhHHHHHHHhccccCCCCceEEccC---CCCC----CcccccCCC
Q 046637 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-PIAQGAFEILSKTSAKLPLLVLVPE---CGEP----VSTVASSSG 160 (301)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~----~~~~~~~~~ 160 (301)
++.||+++.++++++.++|+.++++++|++.+.. +.+......++ .+..++...+ .... ........+
T Consensus 95 ~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (613)
T COG1022 95 AVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCP----KVVDLIVIIDLVREAVEAKALVLEVFPDEG 170 (613)
T ss_pred CeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhcccc----chhhhhhhhhhhhhccchhhcccccccccc
Confidence 9999999999999999999999999999997544 33443333222 1111111111 0000 000000011
Q ss_pred CccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh-CCCCCEEEEeccchhhhhh
Q 046637 161 NLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE-MGLMPTYLWCVPMFHCNGW 239 (301)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~l~~~p~~h~~g~ 239 (301)
...+ ...............+||+|.|+|||||||.||||++||+|+++++........ ..++|++++.+|+.|++.+
T Consensus 171 ~~~~--~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er 248 (613)
T COG1022 171 ISLF--LIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFER 248 (613)
T ss_pred chhh--hhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHH
Confidence 1111 011111112224578999999999999999999999999999999999999996 8999999999999999998
Q ss_pred HHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 240 CLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 240 ~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
++.......|+..++ ...++.++++.++++|||.++.+|.+|+.+.+
T Consensus 249 ~~~~~~~~~~g~~~~-~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~ 295 (613)
T COG1022 249 AFEGGLALYGGVTVL-FKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYK 295 (613)
T ss_pred HHHHHHHhhcceEEE-ecCCHHHHHHHHHHhCCeEEeechHHHHHHHH
Confidence 864333333333333 34589999999999999999999999999875
No 19
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=1e-37 Score=286.54 Aligned_cols=285 Identities=24% Similarity=0.292 Sum_probs=232.7
Q ss_pred cCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCHHHHHHHHHhh
Q 046637 7 CSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHL-GISPGDVVAALAPNVPAMYELHFGVP 85 (301)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~ 85 (301)
...+.+..++.+.|.+.++.+|+++|+++.++.+||+||.+++.+++..|.+. |+++|++|+++++|++++++++|||+
T Consensus 3 ~~~~~~~~tl~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 82 (546)
T PRK08314 3 KSLTLPETSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAIL 82 (546)
T ss_pred CCCCCCCCCHHHHHHHHHHHcCCCcceeecCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred hccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCC--------------
Q 046637 86 MAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEP-------------- 151 (301)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------- 151 (301)
++|++++|++|..+.+++.++++.+++++++++.+....+....... .++.+++.+.....
T Consensus 83 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (546)
T PRK08314 83 RANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-----RLRHVIVAQYSDYLPAEPEIAVPAWLRA 157 (546)
T ss_pred HcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc-----CcceEEEecchhhcccccccCccccccc
Confidence 99999999999999999999999999999999987766554433321 12333332110000
Q ss_pred --CcccccCCCCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEE
Q 046637 152 --VSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLW 229 (301)
Q Consensus 152 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~ 229 (301)
........++..+++........ ......++++++|+|||||||.||+|.++|.+++.++......+.+..+|++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~ 236 (546)
T PRK08314 158 EPPLQALAPGGVVAWKEALAAGLAP-PPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLA 236 (546)
T ss_pred ccccccccccccccHHHHhcccCCC-CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEE
Confidence 00001112334566555432221 223456789999999999999999999999999998888777888899999999
Q ss_pred eccchhhhhhHH-HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 230 CVPMFHCNGWCL-TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 230 ~~p~~h~~g~~~-~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
..|++|.+|+.. ++.++..|+++++.+.+++..+++.++++++|++.++|+++..++..+.....+++
T Consensus 237 ~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~ 305 (546)
T PRK08314 237 VLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLS 305 (546)
T ss_pred EcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCch
Confidence 999999999764 67889999999999999999999999999999999999999999987655544443
No 20
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-38 Score=272.94 Aligned_cols=275 Identities=21% Similarity=0.233 Sum_probs=230.4
Q ss_pred CCCCCHHHHHHHHhhhcCCccEEEECC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 11 YVPLTPISFLERSAVVYRDRPSVVYGD--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~al~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
-...++++.|.+.++++||++|+++.+ +++||+|+.+.+.++|+.|...|++.||.|+++++|++|++.+.++++++|
T Consensus 74 r~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlG 153 (649)
T KOG1179|consen 74 RERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLG 153 (649)
T ss_pred ccCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhC
Confidence 356789999999999999999999977 799999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHH
Q 046637 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLL 168 (301)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (301)
++...||++...+-|.|-++.++++++|++.+..+.+.++...... +--.+...+.... ..+...+.+.+
T Consensus 154 v~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~---~~i~~~~~~~~~~-------~~g~~~L~~~l 223 (649)
T KOG1179|consen 154 VITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIK---NGIHVFSLGPTSV-------PDGIESLLAKL 223 (649)
T ss_pred ceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhh---ccceEEecCCCCC-------CchHHHHHHhh
Confidence 9999999999999999999999999999999988777776433321 1111222221111 12223333333
Q ss_pred hhccccc----cCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH-HHH
Q 046637 169 AIGKLRE----VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC-LTW 243 (301)
Q Consensus 169 ~~~~~~~----~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~-~~~ 243 (301)
+.....+ ........++++.+|||||||.||++++||.-...........++++.+|+++.++|+||..|.. .+-
T Consensus 224 ~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~ 303 (649)
T KOG1179|consen 224 SAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIG 303 (649)
T ss_pred cccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHH
Confidence 3333332 22345567899999999999999999999999888777788899999999999999999998855 478
Q ss_pred HHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccc
Q 046637 244 AVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENR 295 (301)
Q Consensus 244 ~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 295 (301)
.++..|+|+|+-++|++.+|++.-.+|+||++...-.+.+.|++.|..+.++
T Consensus 304 ~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er 355 (649)
T KOG1179|consen 304 GCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEER 355 (649)
T ss_pred HHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhc
Confidence 8899999999999999999999999999999999999999999998765443
No 21
>PLN03052 acetate--CoA ligase; Provisional
Probab=100.00 E-value=5.8e-38 Score=294.58 Aligned_cols=278 Identities=19% Similarity=0.236 Sum_probs=215.9
Q ss_pred CCHH-HHHHHHhhhcCCccEEEECC--------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHh
Q 046637 14 LTPI-SFLERSAVVYRDRPSVVYGD--------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGV 84 (301)
Q Consensus 14 ~~~~-~~l~~~~~~~~~~~al~~~~--------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~ 84 (301)
.|+. .+|.+.++++||++|+++.+ +.+||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||
T Consensus 174 ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~ 253 (728)
T PLN03052 174 LNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAI 253 (728)
T ss_pred eEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 3444 35666666789999999854 37999999999999999999999999999999999999999999999
Q ss_pred hhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch------hhHHHHHHHhccccCCCCceEEccCCCCCCcccccC
Q 046637 85 PMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL------PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASS 158 (301)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 158 (301)
+++|++++|++|.++.+++.+++++++++++|+++... .....+.+.. .++++++....... .....
T Consensus 254 ~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~------~~~~iv~~~~~~~~-~~~~~ 326 (728)
T PLN03052 254 ILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAK------APKAIVLPADGKSV-RVKLR 326 (728)
T ss_pred HHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhc------CCcEEEEeCCCCcc-ccccc
Confidence 99999999999999999999999999999999987543 1222222211 12344433221100 00001
Q ss_pred CCCccHHHHHhhcccc-----ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccc
Q 046637 159 SGNLEYESLLAIGKLR-----EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPM 233 (301)
Q Consensus 159 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~ 233 (301)
.....|++++...... ........+++++|+|||||||+||||+++|.+++.........+++.++|++++..|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l 406 (728)
T PLN03052 327 EGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNL 406 (728)
T ss_pred cCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCc
Confidence 1235677765442111 11112356899999999999999999999999987776665556788899999999999
Q ss_pred hhhhhhHHHHHHHHhCCeEEeeCC-CCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 234 FHCNGWCLTWAVAAQGGTNVCQRT-VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 234 ~h~~g~~~~~~~l~~g~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
.|+.|...++.+|..|+++++.++ +++..+++.++++++|++.++|++++.|.+.......++++
T Consensus 407 ~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlss 472 (728)
T PLN03052 407 GWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSS 472 (728)
T ss_pred HHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhh
Confidence 999998777899999999999874 56778999999999999999999999999876555566654
No 22
>PLN02654 acetate-CoA ligase
Probab=100.00 E-value=1e-37 Score=291.68 Aligned_cols=274 Identities=18% Similarity=0.204 Sum_probs=206.9
Q ss_pred HHHHHHHhh-hcCCccEEEEC------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 17 ISFLERSAV-VYRDRPSVVYG------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 17 ~~~l~~~~~-~~~~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.+++.+.++ .+|+++|+++. .+++||+||.+++.++|..|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 91 ~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Ga 170 (666)
T PLN02654 91 YNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGA 170 (666)
T ss_pred HHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 467777765 48999999974 26899999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhh---------HHHHHHHhccccCCCCceEEccCCCCC--CcccccC
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPI---------AQGAFEILSKTSAKLPLLVLVPECGEP--VSTVASS 158 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~ 158 (301)
+++|+++.++.+++..++++++++++|+++..... +.+..............++..+..... .......
T Consensus 171 v~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (666)
T PLN02654 171 VHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQE 250 (666)
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccccccccc
Confidence 99999999999999999999999999998764321 111111111000011222222221100 0000000
Q ss_pred CCCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHH-HHHHHHHhhCCCCCEEEEeccchhhh
Q 046637 159 SGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLN-SLAAALFNEMGLMPTYLWCVPMFHCN 237 (301)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~l~~~p~~h~~ 237 (301)
.....|+++..............++++++|+|||||||.||||+++|.+++.. .......+++.++|++++..|++|+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 330 (666)
T PLN02654 251 GRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWIT 330 (666)
T ss_pred CCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhh
Confidence 01123455443322111122356799999999999999999999999997643 34455667889999999999999999
Q ss_pred hhHH-HHHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 238 GWCL-TWAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 238 g~~~-~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
|... ++.+|..|+++++.++ +++..+++.|+++++|+++++|++++.|++...
T Consensus 331 g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 388 (666)
T PLN02654 331 GHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGD 388 (666)
T ss_pred hhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCc
Confidence 9764 6888999999999863 589999999999999999999999999998754
No 23
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=100.00 E-value=4.9e-38 Score=293.15 Aligned_cols=271 Identities=20% Similarity=0.269 Sum_probs=213.4
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEEC----C-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYG----D-----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
...+++++|++.++++|+++|+.+. + +++||+|+.+++.++|.+|.+.|+++||+|+|+++|+++|+++++
T Consensus 40 ~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~l 119 (660)
T PLN02430 40 DITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAME 119 (660)
T ss_pred CCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4568999999999999999999752 1 357999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchh-hHHHHHHHhccccCCCCceEEccCCCCCCccc--ccCC
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP-IAQGAFEILSKTSAKLPLLVLVPECGEPVSTV--ASSS 159 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~ 159 (301)
||+++|++++|+++.++.+++.+++++++++++|++..... .+.......+ .++.++.++......... ....
T Consensus 120 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~----~l~~ii~~~~~~~~~~~~~~~~~~ 195 (660)
T PLN02430 120 ACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAK----RLKAIVSFTSVTEEESDKASQIGV 195 (660)
T ss_pred HHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCC----CceEEEEECCCChHHhhhhhcCCc
Confidence 99999999999999999999999999999999999865322 2111111111 456677765422110000 0011
Q ss_pred CCccHHHHHhhccccc-cCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh-----hCCCCCEEEEeccc
Q 046637 160 GNLEYESLLAIGKLRE-VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN-----EMGLMPTYLWCVPM 233 (301)
Q Consensus 160 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~ 233 (301)
....|+++...+...+ ......++++++|+|||||||.||||++||.++..++....... .+..+|++++.+|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl 275 (660)
T PLN02430 196 KTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPL 275 (660)
T ss_pred EEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcH
Confidence 1246777665443221 12234578999999999999999999999999988776543321 46788999999999
Q ss_pred hhhhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 234 FHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 234 ~h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
+|.+++...+.++..|+++++... ++..+++.+++++||++.++|.+++.+.+
T Consensus 276 ~H~~~~~~~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~ 328 (660)
T PLN02430 276 AHILDRMIEEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHE 328 (660)
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHH
Confidence 999998876667889999888754 78899999999999999999999998875
No 24
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=100.00 E-value=1.3e-37 Score=285.25 Aligned_cols=278 Identities=25% Similarity=0.309 Sum_probs=228.0
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhc
Q 046637 8 SANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMA 87 (301)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 87 (301)
..|..++++.++|++.++.+||++|+++.++.+||+||.+.+.++|..|.+.|+++|++|+++++|++++++++|||+++
T Consensus 15 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~ 94 (542)
T PRK06155 15 PLPPSERTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWL 94 (542)
T ss_pred cCCccccCHHHHHHHHHHHCCCCeEEEeCCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHh
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 88 GAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
|++++|+++.++.+++..+++.+++++++++......+.+...... ..+.++.++..... .....+ ...++
T Consensus 95 G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~-~~~~~ 165 (542)
T PRK06155 95 GAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDL----PLPAVWLLDAPASV----SVPAGW-STAPL 165 (542)
T ss_pred CCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhccccc----CcceEEEecCcccc----cccccc-chhhh
Confidence 9999999999999999999999999999998876655444322211 34555555533210 000000 00111
Q ss_pred HhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHH
Q 046637 168 LAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAA 247 (301)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~ 247 (301)
.. ...........++++++|+|||||||.||+|+++|.++..........+++.+++++++..|++|.+|+..++.++.
T Consensus 166 ~~-~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~ 244 (542)
T PRK06155 166 PP-LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALL 244 (542)
T ss_pred cc-cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 11 11111122346789999999999999999999999999888777777788899999999999999999988899999
Q ss_pred hCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccc
Q 046637 248 QGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENR 295 (301)
Q Consensus 248 ~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 295 (301)
.|+++++.+.+++..+++.++++++|++.++|+++..|.+.+.....+
T Consensus 245 ~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 292 (542)
T PRK06155 245 AGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDR 292 (542)
T ss_pred cCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccc
Confidence 999999999999999999999999999999999999999876554433
No 25
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.8e-39 Score=263.35 Aligned_cols=277 Identities=25% Similarity=0.298 Sum_probs=242.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
-|.+.++.+++.++++++||++|++++++.+||+|+.++++++|.+|.++|+++||+|.+..||..+|++.+||++++|+
T Consensus 24 yW~d~~l~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv 103 (542)
T COG1021 24 YWQDRTLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGV 103 (542)
T ss_pred cccCCcHHHHHHHHHhhcCCceEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCch-----hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccH
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-----PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEY 164 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 164 (301)
.+|.--|.....|+.++...+.++.+|.+.... .+..+.....+ .++.+++.++.+... ..+
T Consensus 104 ~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~----tlr~v~v~ge~~~~~---------~~~ 170 (542)
T COG1021 104 APVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHP----TLRHVIVAGEAEHPS---------VLE 170 (542)
T ss_pred chhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCC----cceEEEEccCCCCcc---------hhh
Confidence 999999999999999999999999999987533 34455555544 788888875443210 122
Q ss_pred HHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH--H
Q 046637 165 ESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL--T 242 (301)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~--~ 242 (301)
..+-............++++++++..+.||||.||.|..||....-+.++..+.+.+++.+++++.+|..|-|.+++ .
T Consensus 171 ~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~ 250 (542)
T COG1021 171 AALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGA 250 (542)
T ss_pred hhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcch
Confidence 22222222223334577788999999999999999999999999889999999999999999999999999999996 7
Q ss_pred HHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccCC
Q 046637 243 WAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299 (301)
Q Consensus 243 ~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~~ 299 (301)
+..+..||++|+.++.+|...+..|++|++|+..++|.+...+++..+..+.+|+|.
T Consensus 251 LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSL 307 (542)
T COG1021 251 LGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSL 307 (542)
T ss_pred hheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchhe
Confidence 888999999999999999999999999999999999999999999999999999875
No 26
>PRK13382 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=2.1e-37 Score=283.60 Aligned_cols=262 Identities=23% Similarity=0.245 Sum_probs=219.8
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
+.++.++|.+.++++||++|+++.++.+||+||.++++++|.+|.+.|+++|++|+++++|++++++++|||+++|++++
T Consensus 42 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 121 (537)
T PRK13382 42 GMGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADIL 121 (537)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEeCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcc
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGK 172 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (301)
|+++.++.+++.++++.++++++|++......+.......+ ....++..++.. ....++++.....
T Consensus 122 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----------~~~~~~~~~~~~~ 187 (537)
T PRK13382 122 LLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCP----QATRIVAWTDED----------HDLTVEVLIAAHA 187 (537)
T ss_pred ecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhcc----ccceEEEecCCc----------ccccHHHHhhccC
Confidence 99999999999999999999999999776655444332211 122233332211 1133444433222
Q ss_pred ccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeE
Q 046637 173 LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTN 252 (301)
Q Consensus 173 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~ 252 (301)
... ....+++.++++|||||||.||||+++|.++..+.......+.+..+++++...|++|.+|+...+.++..|+++
T Consensus 188 ~~~--~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~ 265 (537)
T PRK13382 188 GQR--PEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTI 265 (537)
T ss_pred cCC--CCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEE
Confidence 111 123467899999999999999999999999888777777777788899999999999999998788889999999
Q ss_pred EeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 253 VCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 253 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
++.+.+++..+++.++++++|++..+|++++.|++...
T Consensus 266 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 303 (537)
T PRK13382 266 VTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPA 303 (537)
T ss_pred EECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCc
Confidence 99889999999999999999999999999999987653
No 27
>PRK07529 AMP-binding domain protein; Validated
Probab=100.00 E-value=3.9e-37 Score=286.50 Aligned_cols=275 Identities=25% Similarity=0.307 Sum_probs=219.8
Q ss_pred CCCCCHHHHHHHHhhhcCCccEEEE--------CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 11 YVPLTPISFLERSAVVYRDRPSVVY--------GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~al~~--------~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
..+.+++++|.+.++++|+++|+++ ..+++||+||.+++.++|..|.++|+++||+|+++++|++++++++|
T Consensus 22 ~~~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l 101 (632)
T PRK07529 22 DLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW 101 (632)
T ss_pred cCCCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4567899999999999999999987 24699999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch-----hhHHHHHHHhccccCCCCceEEccCCCCCCccc--
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-----PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTV-- 155 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-- 155 (301)
||+++| +++|++|.++.+++.++++.++++++|++.... ..+.......+ .++.++.++.........
T Consensus 102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~ 176 (632)
T PRK07529 102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALP----ELRTVVEVDLARYLPGPKRL 176 (632)
T ss_pred HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCC----cceeEEEecCcccccccccc
Confidence 999999 579999999999999999999999999986543 22222222222 455666555332100000
Q ss_pred -------ccCCCCccHHHHHhhcccc--ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCE
Q 046637 156 -------ASSSGNLEYESLLAIGKLR--EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPT 226 (301)
Q Consensus 156 -------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~ 226 (301)
....+...|.+.+...... .......++++++|+|||||||.||+|.+||.+++.+.......+.+.++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~ 256 (632)
T PRK07529 177 AVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDT 256 (632)
T ss_pred cccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCE
Confidence 0112334566655443322 1122346789999999999999999999999999988877777778889999
Q ss_pred EEEeccchhhhhhH-HHHHHHHhCCeEEeeCC--C-C---HHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 227 YLWCVPMFHCNGWC-LTWAVAAQGGTNVCQRT--V-N---AKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 227 ~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~~~--~-~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+++.+|++|.+|+. .++.++..|+++++.+. + + ..++++.++++++|++.++|++++.|++.+.
T Consensus 257 ~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 327 (632)
T PRK07529 257 VFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV 327 (632)
T ss_pred EEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc
Confidence 99999999999976 47888999999998753 2 1 3688999999999999999999999998764
No 28
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=3.8e-37 Score=284.18 Aligned_cols=287 Identities=23% Similarity=0.314 Sum_probs=225.0
Q ss_pred cCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 7 CSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
.+.+...+++.++|++.++++|+++|+++.++.+||+||.+.++++|..|.+.|+++||+|+++++|++++++++|||++
T Consensus 25 ~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~ 104 (573)
T PRK05605 25 HDLDYGDTTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLR 104 (573)
T ss_pred cccCCCcCCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 34455567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCC--------------
Q 046637 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPV-------------- 152 (301)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------- 152 (301)
+|++++|++|.++.+++.+++++++++++|+++.......+..... ....++.++......
T Consensus 105 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 179 (573)
T PRK05605 105 LGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT-----PLETIVSVNMIAAMPLLQRLALRLPIPAL 179 (573)
T ss_pred cCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc-----ccceeEeeecccccccccccccccccccc
Confidence 9999999999999999999999999999999877665544433221 233343332111000
Q ss_pred -----cccccCCCCccHHHHHhhcccc----ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh-C-
Q 046637 153 -----STVASSSGNLEYESLLAIGKLR----EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE-M- 221 (301)
Q Consensus 153 -----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~- 221 (301)
.......+...|.++....... ........+++++++|||||||.||+|.+||.++..+.......+. +
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~ 259 (573)
T PRK05605 180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLG 259 (573)
T ss_pred cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccC
Confidence 0000112334566554432211 1122355789999999999999999999999999877664433322 2
Q ss_pred CCCCEEEEeccchhhhhhHH-HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 222 GLMPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 222 ~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
..++++++..|++|.+|+.. .+.++..|+++++.+.+++..+++.++++++|++.++|++++.|++.+.....++++
T Consensus 260 ~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 337 (573)
T PRK05605 260 DGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSG 337 (573)
T ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchh
Confidence 34689999999999999765 566788999999998899999999999999999999999999999876655444443
No 29
>PRK06164 acyl-CoA synthetase; Validated
Probab=100.00 E-value=2.7e-37 Score=283.34 Aligned_cols=275 Identities=24% Similarity=0.217 Sum_probs=219.8
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.-...++.++|.+.++.+|+++|+++.++.+||+||.+.+.++|..|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 6 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~ 85 (540)
T PRK06164 6 APRADTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGA 85 (540)
T ss_pred ccCCCCHHHHHHHHHHhCCCCeEEecCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCc
Confidence 34456899999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhh-HHHHHHHhc-cccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPI-AQGAFEILS-KTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
+++|+++..+.+++.++++.+++++++++++.... +.+...... .....++.++.++.......... ...+.+.
T Consensus 86 ~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 161 (540)
T PRK06164 86 TVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPA----PGARVQL 161 (540)
T ss_pred EEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCC----ccccccc
Confidence 99999999999999999999999999998765321 111111111 11113445555542111000000 0001111
Q ss_pred Hhhcccc----ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHH
Q 046637 168 LAIGKLR----EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTW 243 (301)
Q Consensus 168 ~~~~~~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~ 243 (301)
....... ........+++++++|||||||.||+|++||.++..+.......+++..++++++.+|++|.+|+..++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~ 241 (540)
T PRK06164 162 FALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLL 241 (540)
T ss_pred ccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHH
Confidence 1100000 001223468899999999999999999999999999888888888899999999999999999998889
Q ss_pred HHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 244 AVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 244 ~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
.++..|+++++.+.+++..+++.++++++|+++++|+++..|.+.
T Consensus 242 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~ 286 (540)
T PRK06164 242 GALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDT 286 (540)
T ss_pred HHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999887
No 30
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=3.1e-37 Score=282.89 Aligned_cols=269 Identities=23% Similarity=0.291 Sum_probs=226.6
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
.+|+.+.+++.++.+|+++|+.+.++.+||.||.+.++++|..|.+.|+++|++|+++++|++++++++|||+++|++++
T Consensus 16 ~~n~~~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v 95 (542)
T PRK07786 16 RQNWVNQLARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAV 95 (542)
T ss_pred ccCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcc
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGK 172 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (301)
|+++..+.+++..+++.+++++++++......+.......+ ..+.++..++... .+...++++.....
T Consensus 96 pl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 163 (542)
T PRK07786 96 PVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVP----LLSTVVVAGGSSD--------DSVLGYEDLLAEAG 163 (542)
T ss_pred EcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccC----ccceEEEecCCCc--------ccccCHHHHhhccC
Confidence 99999999999999999999999999876655544433222 4455555543211 12245666554433
Q ss_pred ccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhC-CCCCEEEEeccchhhhhhHHHHHHHHhCCe
Q 046637 173 LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEM-GLMPTYLWCVPMFHCNGWCLTWAVAAQGGT 251 (301)
Q Consensus 173 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~ 251 (301)
..........+++++++|||||||.||||.+||.++...+......+++ ..++++++..|++|.+|+..++.++..|++
T Consensus 164 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~ 243 (542)
T PRK07786 164 PAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAP 243 (542)
T ss_pred CCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCE
Confidence 3322234556789999999999999999999999999888777777766 577899999999999999888999999999
Q ss_pred EEeeC--CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcc
Q 046637 252 NVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFE 293 (301)
Q Consensus 252 ~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 293 (301)
+++.+ .++|..+++.++++++|+++++|++++.++.......
T Consensus 244 ~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~ 287 (542)
T PRK07786 244 TVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP 287 (542)
T ss_pred EEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc
Confidence 99875 6799999999999999999999999999987655433
No 31
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=100.00 E-value=4.4e-37 Score=286.23 Aligned_cols=269 Identities=18% Similarity=0.202 Sum_probs=210.5
Q ss_pred HHHHHHHhhhcCCccEEEEC------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 17 ISFLERSAVVYRDRPSVVYG------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 17 ~~~l~~~~~~~~~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.++|.+.++.+|+++|+++. ++++||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|++
T Consensus 55 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav 134 (628)
T TIGR02316 55 HNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAI 134 (628)
T ss_pred HHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 46788888889999999972 368999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCCch---------hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL---------PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
++|+++.++.+++.+++++++++++|+++... ..+.+...... .....+++++...... .......
T Consensus 135 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vi~~~~~~~~~--~~~~~~~ 209 (628)
T TIGR02316 135 HSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQ---HPPPHVLLVDRGLAPM--RLIPGRD 209 (628)
T ss_pred EEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcC---CCCCEEEEEeCCCCCc--CcccCcc
Confidence 99999999999999999999999999986432 11222222111 1345566665421110 0000112
Q ss_pred ccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHH-HHHHHHHhhCCCCCEEEEeccchhhhhh
Q 046637 162 LEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLN-SLAAALFNEMGLMPTYLWCVPMFHCNGW 239 (301)
Q Consensus 162 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~l~~~p~~h~~g~ 239 (301)
..+.++....... .......++++++|+|||||||.||||+++|.+++.+ .......+++.++|++++..|++|+.|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~ 289 (628)
T TIGR02316 210 VDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGH 289 (628)
T ss_pred ccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehh
Confidence 3455554432211 1112246789999999999999999999999997644 3345556788899999999999999986
Q ss_pred H-HHHHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 240 C-LTWAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 240 ~-~~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
. .++.+++.|+++++.++ +++..+++.++++++|+++++|++++.|.+.+.
T Consensus 290 ~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 345 (628)
T TIGR02316 290 SYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDA 345 (628)
T ss_pred hHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCC
Confidence 5 47888999999999863 578999999999999999999999999987653
No 32
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=100.00 E-value=6.2e-37 Score=279.35 Aligned_cols=266 Identities=24% Similarity=0.329 Sum_probs=224.8
Q ss_pred CHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeec
Q 046637 15 TPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL 94 (301)
Q Consensus 15 ~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (301)
++.++|...++++|+++++.+.++.+||+||.+.+.+++..|.+.|+++|++|+++++|++++++++|||+++|++++|+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 80 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPI 80 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcccc
Q 046637 95 NTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR 174 (301)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (301)
++..+.+++..+++.+++++++++......+.+.....+ ++..++.+++...... .......|+++.......
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 153 (515)
T TIGR03098 81 NPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCH----DLRTLILVGEPAHASE---GGGESPSWPKLLALGDAD 153 (515)
T ss_pred CCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhccc----ccceEEEecCcccccC---CccccccHHHhhcccccc
Confidence 999999999999999999999998776655544433332 4455666554322110 111223455554432221
Q ss_pred ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEe
Q 046637 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVC 254 (301)
Q Consensus 175 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~ 254 (301)
.......+++++|+|||||||.||+|.+||.++..++......+.+..+|++++.+|++|.+|+..++.++..|+++++
T Consensus 154 -~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~ 232 (515)
T TIGR03098 154 -PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVL 232 (515)
T ss_pred -ccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEE
Confidence 1223456789999999999999999999999999888887778888899999999999999999888999999999999
Q ss_pred eCCCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 255 QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 255 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
.+.+++..+++.++++++|++.++|+++..|.+.
T Consensus 233 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 266 (515)
T TIGR03098 233 HDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQL 266 (515)
T ss_pred cCCCCHHHHHHHHHHcCCceEecChHHHHHHHhc
Confidence 9889999999999999999999999999999875
No 33
>PLN02246 4-coumarate--CoA ligase
Probab=100.00 E-value=6.6e-37 Score=280.52 Aligned_cols=270 Identities=26% Similarity=0.302 Sum_probs=222.2
Q ss_pred CCCHHHHHHHHhhhcCCccEEEEC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYG--DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.+++.+++.++++++|+++|+++. ++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 22 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~ 101 (537)
T PLN02246 22 HLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAV 101 (537)
T ss_pred CCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEE
Confidence 468999999999999999999985 478999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhh
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAI 170 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (301)
++|++|..+.+++..+++.+++++++++......+.+.... . . ..++.++... .+...+.++...
T Consensus 102 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~----~-~~~i~~~~~~---------~~~~~~~~~~~~ 166 (537)
T PLN02246 102 TTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-D----G-VTVVTIDDPP---------EGCLHFSELTQA 166 (537)
T ss_pred EecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-C----C-ceEEEeCCCC---------CCceeHHHHhcC
Confidence 99999999999999999999999999988776655443321 1 2 2344444321 112344554433
Q ss_pred ccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH----HhhCCCCCEEEEeccchhhhhhHH-HHHH
Q 046637 171 GKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL----FNEMGLMPTYLWCVPMFHCNGWCL-TWAV 245 (301)
Q Consensus 171 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~l~~~p~~h~~g~~~-~~~~ 245 (301)
...........++++++++|||||||.||||+++|.++..+...... .+.+..+|++++..|++|.+++.. ++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~ 246 (537)
T PLN02246 167 DENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCG 246 (537)
T ss_pred CCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHH
Confidence 22221222356789999999999999999999999999877665433 456789999999999999999865 6778
Q ss_pred HHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 246 AAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 246 l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
+..|+++++.+.+++..+++.++++++|++.++|+++..|++.+.....+++
T Consensus 247 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~ 298 (537)
T PLN02246 247 LRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLS 298 (537)
T ss_pred HhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCcc
Confidence 9999999999999999999999999999999999999999987665544443
No 34
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=100.00 E-value=5e-37 Score=285.98 Aligned_cols=270 Identities=21% Similarity=0.313 Sum_probs=212.6
Q ss_pred HHHHHHHHhhhcCCccEEEECC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 16 PISFLERSAVVYRDRPSVVYGD------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 16 ~~~~l~~~~~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
..++|++.++++|+++|+++.+ +.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|+
T Consensus 59 ~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 138 (625)
T TIGR02188 59 SYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGA 138 (625)
T ss_pred HHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCC
Confidence 3467778888899999999743 4899999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCch---------hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCC
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL---------PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSG 160 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 160 (301)
+++|+++.++.+++.+++++++++++|+++... ..+.+.....+. .++.+++++...... ......
T Consensus 139 v~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~ 213 (625)
T TIGR02188 139 IHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPV---SVEHVLVVRRTGNPV--PWVEGR 213 (625)
T ss_pred EEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCC---CccEEEEEcCCCCCc--Cccccc
Confidence 999999999999999999999999999987542 222222222110 245555554332110 000111
Q ss_pred CccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHH-HHHHhhCCCCCEEEEeccchhhhhh
Q 046637 161 NLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLA-AALFNEMGLMPTYLWCVPMFHCNGW 239 (301)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~l~~~p~~h~~g~ 239 (301)
...++++..............++++++|+|||||||.||||+++|.+++.+... ....+++.++|++++..|++|+.|.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~ 293 (625)
T TIGR02188 214 DVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGH 293 (625)
T ss_pred cccHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhcc
Confidence 234666555433222223466789999999999999999999999998655443 4445678889999999999999886
Q ss_pred HH-HHHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 240 CL-TWAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 240 ~~-~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
.. ++.++..|+++++.+. +++..+++.++++++|+++++|++++.|.+...
T Consensus 294 ~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 349 (625)
T TIGR02188 294 SYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGD 349 (625)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCC
Confidence 54 7888999999998753 489999999999999999999999999998654
No 35
>PRK08162 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.9e-36 Score=278.05 Aligned_cols=287 Identities=54% Similarity=0.875 Sum_probs=228.3
Q ss_pred cccccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 3 GMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
.+-+......++++.+.|++.++.+|+++|+.+.++.+||+||.+.+.++|..|.+.|+++||+|+++++|++++++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l 86 (545)
T PRK08162 7 GLDRNAANYVPLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHF 86 (545)
T ss_pred ccCccccccccCCHHHHHHHHHHHCCCCeEEEECCeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHH
Confidence 34445556668899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
||+++|++++|+++..+.+++..+++.++++.++++......+.+.....+ ....+.++.... ........+..
T Consensus 87 A~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~ 160 (545)
T PRK08162 87 GVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLP-----GPKPLVIDVDDP-EYPGGRFIGAL 160 (545)
T ss_pred HHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCC-----CCceEEEecCcc-ccccCCCcccc
Confidence 999999999999999999999999999999999999887766655443332 122233322211 00011112334
Q ss_pred cHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH
Q 046637 163 EYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL 241 (301)
Q Consensus 163 ~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~ 241 (301)
.+.++....... ........+++++|+|||||||.||||+++|.++..+.......+.+..++++++..|++|.+|+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~ 240 (545)
T PRK08162 161 DYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCF 240 (545)
T ss_pred cHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHH
Confidence 566665443222 1111233457899999999999999999999998777666666677888899999999999999876
Q ss_pred HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccc
Q 046637 242 TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENR 295 (301)
Q Consensus 242 ~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 295 (301)
.+...+.|++.++...+++..+++.++++++|++.++|++++.|++.+......
T Consensus 241 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 294 (545)
T PRK08162 241 PWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAG 294 (545)
T ss_pred HHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccC
Confidence 555556777777778899999999999999999999999999999876544333
No 36
>PRK08316 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.8e-36 Score=276.78 Aligned_cols=278 Identities=28% Similarity=0.375 Sum_probs=229.7
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
...++.++|...++.+||++|+++.++.+||+||.+.+.++|..|.+.|+++|++|+++++|++++++++|||+++|+++
T Consensus 9 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~ 88 (523)
T PRK08316 9 RRQTIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVH 88 (523)
T ss_pred cCCCHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+|+++..+.+++..+++.+++++++++......+.+..+... ...+........ .........++++....
T Consensus 89 v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 159 (523)
T PRK08316 89 VPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP-----VDTLILSLVLGG----REAPGGWLDFADWAEAG 159 (523)
T ss_pred EecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC-----ccceeeeecccc----cccccchhhHHHHHhcC
Confidence 999999999999999999999999999877666554433322 111111111100 00112234455554433
Q ss_pred cccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCC
Q 046637 172 KLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGG 250 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~ 250 (301)
...........+++++|+|||||||.||+|.+||.+++.+.......+++.+++++++..|++|.+|+.. ++.++..|+
T Consensus 160 ~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~ 239 (523)
T PRK08316 160 SVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGA 239 (523)
T ss_pred CCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCc
Confidence 3322334466789999999999999999999999999988888888888999999999999999999875 556688999
Q ss_pred eEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 251 TNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 251 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
++++.+.+++..+++.++++++|++.++|+++..|++.......++++
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 287 (523)
T PRK08316 240 TNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSS 287 (523)
T ss_pred eEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCccc
Confidence 999998889999999999999999999999999999887666555543
No 37
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=100.00 E-value=3.3e-37 Score=282.20 Aligned_cols=272 Identities=18% Similarity=0.176 Sum_probs=216.3
Q ss_pred CCCCCCCHHHHHHHHhhhcCCccEEEECC-eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhc
Q 046637 9 ANYVPLTPISFLERSAVVYRDRPSVVYGD-VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMA 87 (301)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~al~~~~-~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 87 (301)
..++..++.+.|.+.++++|+++++.+.+ +++||+||.++++++|..|.+. +||+|+++++|++++++++|||+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA~~~~ 90 (539)
T PRK06334 14 KLRSGKTVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYFATLLS 90 (539)
T ss_pred ccCcCCcHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHHHHhc
Confidence 45667899999999999999999998866 7999999999999999999873 8999999999999999999999999
Q ss_pred cceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCC-CceEEccCCCCCCcccccCCCCccHHH
Q 046637 88 GAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKL-PLLVLVPECGEPVSTVASSSGNLEYES 166 (301)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~ 166 (301)
|++++|+++.++.+++.++++.+++++++++.+....+.+...... .. ..++.+++... ...+.+
T Consensus 91 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~----------~~~~~~ 156 (539)
T PRK06334 91 GKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDA----EYPFSLIYMEEVRK----------ELSFWE 156 (539)
T ss_pred CCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccc----cccccEEEEehhhh----------hccHHH
Confidence 9999999999999999999999999999998765544433221100 11 12333332110 001111
Q ss_pred HHhh-----ccc-----cccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhh
Q 046637 167 LLAI-----GKL-----REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHC 236 (301)
Q Consensus 167 ~~~~-----~~~-----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~ 236 (301)
.... ... ........++++++|+|||||||.||||++||.++..+.......+.+..+|++++.+|++|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 236 (539)
T PRK06334 157 KCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHA 236 (539)
T ss_pred hhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhh
Confidence 1000 000 001123567899999999999999999999999999887777777888899999999999999
Q ss_pred hhhHH-HHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 237 NGWCL-TWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 237 ~g~~~-~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
+|+.. ++.++..|+++++.+ .+++..+++.|+++++|++.++|++++.|++.+.....+++
T Consensus 237 ~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 299 (539)
T PRK06334 237 YGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLP 299 (539)
T ss_pred hhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccc
Confidence 99874 678899999998875 57999999999999999999999999999887654444443
No 38
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=100.00 E-value=8e-37 Score=283.78 Aligned_cols=266 Identities=20% Similarity=0.126 Sum_probs=208.1
Q ss_pred CCCCCHHHHHHHHhhhcCCccEEEECC-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhh
Q 046637 11 YVPLTPISFLERSAVVYRDRPSVVYGD-----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVP 85 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~ 85 (301)
....++.+.|++.++++|+++|+++.+ +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~ 115 (614)
T PRK08180 36 DYPRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAM 115 (614)
T ss_pred CcCccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHH
Confidence 346789999999999999999998752 689999999999999999999999999999999999999999999999
Q ss_pred hccceeeecCCCCC-----HHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCC
Q 046637 86 MAGAVLCTLNTRHD-----SAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSG 160 (301)
Q Consensus 86 ~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 160 (301)
++|++++|++|.++ .+++.+++++++++++|+++... .......... ....++..+.... ..+
T Consensus 116 ~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~--~~~~~~~~~~---~~~~~i~~~~~~~-------~~~ 183 (614)
T PRK08180 116 YAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAA--FARALAAVVP---ADVEVVAVRGAVP-------GRA 183 (614)
T ss_pred HcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHH--HHHHHhhhcc---CCceEEEecCCCC-------Ccc
Confidence 99999999999988 79999999999999999975421 1111111110 1122333322110 011
Q ss_pred CccHHHHHhhcccc---ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCC--CCCEEEEeccchh
Q 046637 161 NLEYESLLAIGKLR---EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMG--LMPTYLWCVPMFH 235 (301)
Q Consensus 161 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~--~~~~~l~~~p~~h 235 (301)
...+.++....... .......++++++|+|||||||.||||++||.++..+.......+... .++++++.+|++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h 263 (614)
T PRK08180 184 ATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNH 263 (614)
T ss_pred cccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHH
Confidence 24566555432111 111234678999999999999999999999999998877766666653 5689999999999
Q ss_pred hhhhH-HHHHHHHhCCeEEeeC-CCCH---HHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 236 CNGWC-LTWAVAAQGGTNVCQR-TVNA---KEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 236 ~~g~~-~~~~~l~~g~~~v~~~-~~~~---~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
.+|+. .++.++..|+++++.+ .+++ ..+++.++++++|+++++|++++.|++.
T Consensus 264 ~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~ 321 (614)
T PRK08180 264 TFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPA 321 (614)
T ss_pred HhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHH
Confidence 99976 4677899999999876 3444 4678899999999999999999999864
No 39
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=100.00 E-value=1e-36 Score=275.81 Aligned_cols=245 Identities=26% Similarity=0.298 Sum_probs=212.2
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
+++.++|++.++++||++|+++.++.+||+|+.+++++++..|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus 2 ~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (483)
T PRK03640 2 ETMPNWLKQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVL 81 (483)
T ss_pred CcHHHHHHHHHHhCCCceEEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccc
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL 173 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
+++..+.+++..+++.++++.+++++.......... . ..++++......
T Consensus 82 i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-----------~--------------------~~~~~~~~~~~~ 130 (483)
T PRK03640 82 LNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI-----------S--------------------VKFAELMNGPKE 130 (483)
T ss_pred cCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc-----------c--------------------ccHHHHhhcccc
Confidence 999999999999999999999999875443221110 0 112222211111
Q ss_pred c-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeE
Q 046637 174 R-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTN 252 (301)
Q Consensus 174 ~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~ 252 (301)
. .......++++++++|||||||.||+|.+||.++...+......+++.++|++++..|++|.+|+..++.++..|+++
T Consensus 131 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~ 210 (483)
T PRK03640 131 EAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRV 210 (483)
T ss_pred cCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEE
Confidence 1 122235678899999999999999999999999988877777778889999999999999999988888889999999
Q ss_pred EeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 253 VCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 253 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
++.+.+++.++++.++++++|++.++|+++..|.+..
T Consensus 211 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~ 247 (483)
T PRK03640 211 VLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERL 247 (483)
T ss_pred EecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCc
Confidence 9999999999999999999999999999999998654
No 40
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=100.00 E-value=7.3e-38 Score=278.18 Aligned_cols=255 Identities=27% Similarity=0.359 Sum_probs=198.0
Q ss_pred HHHHhhhcCCccEEEE-CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCC
Q 046637 20 LERSAVVYRDRPSVVY-GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH 98 (301)
Q Consensus 20 l~~~~~~~~~~~al~~-~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~ 98 (301)
|+++++++||++|+++ .++++||+|+.+++.++|..|.++|+++|++|+++++|+++++++++||+++|++++|++|.+
T Consensus 1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~ 80 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSL 80 (417)
T ss_dssp HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS
T ss_pred ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccc
Confidence 6899999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCceEEEEc--CCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcccccc
Q 046637 99 DSAMVSVLLRHSEAKIIFVD--YQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREV 176 (301)
Q Consensus 99 ~~~~l~~~l~~~~~~~vi~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (301)
+.+++.++++.++++++|+. .+... +.++....... .....++.++.... .....+.........
T Consensus 81 ~~~~~~~~l~~~~~~~ii~~~~~d~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 147 (417)
T PF00501_consen 81 SEDELRHILRQSGPKVIITSEAVDSEP-LKKLKSIFKQE-DPSSSIIILDRDDL-----------PKKEALKSASLSDEP 147 (417)
T ss_dssp SHHHHHHHHHHHTESEEEECHHHSCHH-HHHHHHHHTTS-TTTEEEEEESHSSC-----------TTCHHHHHHHHCHCS
T ss_pred ccccccccccccceeEEEEeccccccc-cccchhhhccc-cccccccccccccc-----------ccccccccccccccc
Confidence 99999999999999999981 01111 22222221110 02334555553321 111111111111000
Q ss_pred CCC-CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHH--HHhhCCCCCEEEEeccchhhhhh-HHHHHHHHhCCeE
Q 046637 177 RRP-KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAA--LFNEMGLMPTYLWCVPMFHCNGW-CLTWAVAAQGGTN 252 (301)
Q Consensus 177 ~~~-~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~--~~~~~~~~~~~l~~~p~~h~~g~-~~~~~~l~~g~~~ 252 (301)
... ..++++++++|||||||.||+|.++|.++++.+.... ...+++ |++++..|++|.+|+ ..++.++..|+++
T Consensus 148 ~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 225 (417)
T PF00501_consen 148 QSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATL 225 (417)
T ss_dssp HSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEE
T ss_pred ccCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccccccccccccccc
Confidence 000 0568999999999999999999999999998877754 122223 599999999999998 6789999999999
Q ss_pred EeeCCCC---HHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 253 VCQRTVN---AKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 253 v~~~~~~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
++.+... +..+++.++++++|+++++|++++.+++++
T Consensus 226 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~ 265 (417)
T PF00501_consen 226 VLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSP 265 (417)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHH
T ss_pred cccccccccccccchhcccccccccccccccccccccccc
Confidence 9998654 477899999999999999999999999843
No 41
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.5e-36 Score=283.31 Aligned_cols=268 Identities=21% Similarity=0.295 Sum_probs=212.5
Q ss_pred HHHHHHHhhhcCCccEEEECC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 17 ISFLERSAVVYRDRPSVVYGD------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 17 ~~~l~~~~~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.++|++.++++|+++|+++.+ +.+||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 149 (637)
T PRK00174 70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149 (637)
T ss_pred HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 467888888999999999743 47999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCCch---------hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL---------PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
++|++|.++.+++.+++++++++++|+++... ..+.+.....+ .++.+++++...... .......
T Consensus 150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~ 223 (637)
T PRK00174 150 HSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCP----SVEKVIVVRRTGGDV--DWVEGRD 223 (637)
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCC----CccEEEEEcCCCCCc--CcCCCCc
Confidence 99999999999999999999999999987543 12222222222 455566554332110 0001122
Q ss_pred ccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHH-HHHHhhCCCCCEEEEeccchhhhhhH
Q 046637 162 LEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLA-AALFNEMGLMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~l~~~p~~h~~g~~ 240 (301)
..++++..............++++++|+|||||||.||||+++|.+++.+... ....+++.++|++++..|++|..|..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 303 (637)
T PRK00174 224 LWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHS 303 (637)
T ss_pred ccHHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhH
Confidence 34566654332222223456789999999999999999999999998765443 33456788899999999999998865
Q ss_pred -HHHHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 241 -LTWAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 241 -~~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
.++.++..|+++++.+. +++..+++.++++++|++.++|++++.|++...
T Consensus 304 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 358 (637)
T PRK00174 304 YIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGD 358 (637)
T ss_pred HHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCC
Confidence 47888999999998753 479999999999999999999999999988654
No 42
>PTZ00297 pantothenate kinase; Provisional
Probab=100.00 E-value=6.9e-37 Score=297.64 Aligned_cols=265 Identities=15% Similarity=0.133 Sum_probs=215.5
Q ss_pred CCCHHHHHHHHhhhcCCccEEEEC---C--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhc
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYG---D--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMA 87 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~---~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 87 (301)
..++.++|.+.++++|+++|+... + +++||+|+.+++.++|.+|.++|+++||+|+|+++|+++|+++.+||+++
T Consensus 426 ~~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~ 505 (1452)
T PTZ00297 426 VRSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALY 505 (1452)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 458999999999999999999742 3 68999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCC-CC--cccccCCCCccH
Q 046637 88 GAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGE-PV--STVASSSGNLEY 164 (301)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~--~~~~~~~~~~~~ 164 (301)
|++++|+++ +.+++.+++++++++++|++.+....+.+... ..++++++++.... .. ..........+|
T Consensus 506 GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~------~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~ 577 (1452)
T PTZ00297 506 GFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS------RKLETVVYTHSFYDEDDHAVARDLNITLIPY 577 (1452)
T ss_pred CCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc------cCCcEEEEECCCcccccccccccCCcceeeH
Confidence 999999975 46799999999999999998766655444321 15788888864211 00 000001124568
Q ss_pred HHHHhhcccc--ccCCCCCCCCceEEEe---ccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhh
Q 046637 165 ESLLAIGKLR--EVRRPKDECDPIALNY---TSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHC 236 (301)
Q Consensus 165 ~~~~~~~~~~--~~~~~~~~~~~~~i~~---TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~ 236 (301)
+++...+... +......+++++.|+| ||||||.||||++||.|++.++....... ...++|++++.+|++|+
T Consensus 578 ~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI 657 (1452)
T PTZ00297 578 EFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAML 657 (1452)
T ss_pred HHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHH
Confidence 8888766421 1222346788999996 99999999999999999999888765432 34578999999999999
Q ss_pred hhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 237 NGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 237 ~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
++....+.++..|+++.+ +++..+++.|+++|||+++++|.+++++.+.
T Consensus 658 ~er~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~ 706 (1452)
T PTZ00297 658 FNRVFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQ 706 (1452)
T ss_pred HHHHHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHH
Confidence 997777788899999864 5789999999999999999999999998653
No 43
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=6.5e-37 Score=287.70 Aligned_cols=268 Identities=21% Similarity=0.243 Sum_probs=209.2
Q ss_pred CCCHHHHHHHHhhhcCCccEEEEC---------------------------CeeeeHHHHHHHHHHHHHHHHhcCCCCCC
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYG---------------------------DVQYTWKETHQRCVKLASGLAHLGISPGD 65 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~---------------------------~~~~Ty~el~~~~~~la~~L~~~gv~~g~ 65 (301)
..++.++|.+.++++||++|+.+. .+++||+|+.++++++|++|.++|+++||
T Consensus 68 ~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd 147 (700)
T PTZ00216 68 GPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGS 147 (700)
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 458999999999999999999973 37899999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEc
Q 046637 66 VVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLV 145 (301)
Q Consensus 66 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 145 (301)
+|+|+++|+++|+++++||+++|++++|+++..+.+++.+++++++++++|++......+........ . ....++.+
T Consensus 148 ~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~--~-~~~~ii~~ 224 (700)
T PTZ00216 148 NVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGG--M-PNTTIIYL 224 (700)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhcc--C-CceEEEEE
Confidence 99999999999999999999999999999999999999999999999999998765443333222111 0 12245555
Q ss_pred cCCCCCCcccccCCCCccHHHHHhhcc--cc--ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh--
Q 046637 146 PECGEPVSTVASSSGNLEYESLLAIGK--LR--EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN-- 219 (301)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-- 219 (301)
+..... .........+|+++...+. .. +......++++++|+|||||||.||||++||.|+++++......+
T Consensus 225 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~ 302 (700)
T PTZ00216 225 DSLPAS--VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLND 302 (700)
T ss_pred CCCccc--cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhccc
Confidence 432111 0011122356777766542 11 122334678999999999999999999999999998877655443
Q ss_pred ---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCCHHHHHH-------HHHhcCcceecCChHHHHHHHcC
Q 046637 220 ---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFD-------NITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 220 ---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~-------~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
.+.+++++++.+|++|.+++......+..|+++++. ++..+++ .+++++||++.++|.+++.+.+.
T Consensus 303 ~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~ 378 (700)
T PTZ00216 303 LIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKA 378 (700)
T ss_pred ccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHH
Confidence 236789999999999999987655567777776652 4566655 68999999999999999998753
No 44
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=100.00 E-value=3.1e-36 Score=276.65 Aligned_cols=279 Identities=19% Similarity=0.202 Sum_probs=226.2
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCccEEEECC-eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 8 SANYVPLTPISFLERSAVVYRDRPSVVYGD-VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~-~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
...|...++.++|++.++++||++|+++.+ +.+||+|+.++++++|+.|.+.|+++||+|+++++|+++++++++||++
T Consensus 17 ~~~~~~~~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~ 96 (547)
T PRK06087 17 QGYWGDASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLK 96 (547)
T ss_pred cCCCCCCCHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 345677899999999999999999999876 7999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch-----hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-----PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
+|++++|++|..+.+++.++++.+++++++++.... ..+........ .++.++.++..... ...
T Consensus 97 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------~~~ 165 (547)
T PRK06087 97 VGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLP----QLQQIVGVDKLAPA-------TSS 165 (547)
T ss_pred cCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCC----CCcEEEEeCCcCCC-------cCc
Confidence 999999999999999999999999999999976432 22222222222 34456555543211 111
Q ss_pred ccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH
Q 046637 162 LEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL 241 (301)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~ 241 (301)
..+.++...............+++++|+|||||||.||+|.++|.++..........+++.+++++++..|++|.+|+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 245 (547)
T PRK06087 166 LSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLH 245 (547)
T ss_pred cCHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHH
Confidence 24444443322222222356789999999999999999999999999888877777778889999999999999999764
Q ss_pred -HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 242 -TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 242 -~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
.+.++..|+++++.+.+++..+++.++++++|+++.+|..+..+++.......+++
T Consensus 246 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~ 302 (547)
T PRK06087 246 GVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLS 302 (547)
T ss_pred HHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCC
Confidence 67788899999999999999999999999999999888888888776554444443
No 45
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=100.00 E-value=3.2e-36 Score=274.82 Aligned_cols=270 Identities=22% Similarity=0.308 Sum_probs=219.6
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECC-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhc
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGD-----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMA 87 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 87 (301)
..++.++|++.++++|+++|+++.+ +.+||+||.+.++++|+.|.++|+++||+|+++++|+.++++++|||+++
T Consensus 6 ~~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~ 85 (517)
T PRK08008 6 GQHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKI 85 (517)
T ss_pred cccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 3579999999999999999999864 68999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 88 GAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
|+++++++|..+.+++.++++++++++++++.+....+.++...... ..+.++..+.... ...+...+++.
T Consensus 86 G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------~~~~~~~~~~~ 156 (517)
T PRK08008 86 GAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDAT---PLRHICLTRVALP------ADDGVSSFTQL 156 (517)
T ss_pred CeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccc---cCcEEEEecCCCc------ccccccCHHHH
Confidence 99999999999999999999999999999998877666655433221 3445555443211 11122345544
Q ss_pred Hhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHH
Q 046637 168 LAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAV 245 (301)
Q Consensus 168 ~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~ 245 (301)
....... .......++++++|+|||||||.||||++||.++............+..++++++.+|++|..+... ++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 236 (517)
T PRK08008 157 KAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAA 236 (517)
T ss_pred hccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHH
Confidence 3332221 1122345689999999999999999999999999865443333445678899999999999877654 6778
Q ss_pred HHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCC
Q 046637 246 AAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291 (301)
Q Consensus 246 l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 291 (301)
+..|+++++.+.+++..+++.++++++|++.++|.+++.++..+..
T Consensus 237 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 282 (517)
T PRK08008 237 FSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPS 282 (517)
T ss_pred HhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCc
Confidence 9899999999999999999999999999999999999999876543
No 46
>PLN02479 acetate-CoA ligase
Probab=100.00 E-value=2.8e-36 Score=277.88 Aligned_cols=286 Identities=50% Similarity=0.836 Sum_probs=221.2
Q ss_pred cccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHh
Q 046637 5 IRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGV 84 (301)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~ 84 (301)
....+.+..+++++.|.+.++.+|+++|+++.++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~ 90 (567)
T PLN02479 11 PKNAANYTALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV 90 (567)
T ss_pred cCccccccccCHHHHHHHHHhhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence 34455556678999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred hhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccc---cCCCCceEEccCCCCCC--cccccCC
Q 046637 85 PMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKT---SAKLPLLVLVPECGEPV--STVASSS 159 (301)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~--~~~~~~~ 159 (301)
+++|++++|+++..+.+++.++++.++++++++++...+...+........ ....+.++.++...... .......
T Consensus 91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (567)
T PLN02479 91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK 170 (567)
T ss_pred HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence 999999999999999999999999999999999987765554443332211 00123344443221100 0001112
Q ss_pred CCccHHHHHhhccccc-cCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhh
Q 046637 160 GNLEYESLLAIGKLRE-VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNG 238 (301)
Q Consensus 160 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g 238 (301)
+...+.+++....... .......+++++++|||||||.||||++||.++..........+++..++++++..|++|.+|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~ 250 (567)
T PLN02479 171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNG 250 (567)
T ss_pred CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhh
Confidence 3345666655432221 111233456788999999999999999999998776666666677888999999999999999
Q ss_pred hHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 239 WCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 239 ~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+...+.....++..+..+.+++..+++.++++++|++.++|++++.|.+...
T Consensus 251 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~ 302 (567)
T PLN02479 251 WCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPK 302 (567)
T ss_pred HHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhh
Confidence 8765544344555556677899999999999999999999999999987654
No 47
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.5e-36 Score=282.96 Aligned_cols=270 Identities=18% Similarity=0.171 Sum_probs=203.5
Q ss_pred HHHHHHHhhh--cCCccEEEEC------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 17 ISFLERSAVV--YRDRPSVVYG------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 17 ~~~l~~~~~~--~~~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
.+++++.++. +||++|+++. .+++||+||.+++.++|..|+++|+++||+|+++++|++++++++|||+++|
T Consensus 62 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~G 141 (647)
T PTZ00237 62 YNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIG 141 (647)
T ss_pred HHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 4677777654 7999999873 3589999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCCHHHHHHHHHhcCceEEEEcCCc---------hhhHHHHHHHhccccCCCCceEEccCCCC---CCc---
Q 046637 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQL---------LPIAQGAFEILSKTSAKLPLLVLVPECGE---PVS--- 153 (301)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~--- 153 (301)
++++|+++.++.+++.+++++++++++|+++.. .+.+.+... ... ...++++.+..... ...
T Consensus 142 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~vi~~~~~~~~~~~~~~~~ 218 (647)
T PTZ00237 142 ATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIE-LST--FKPSNVITLFRNDITSESDLKKI 218 (647)
T ss_pred cEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHh-ccc--CCCCEEEEEEcCCcccccccccc
Confidence 999999999999999999999999999997532 122222222 110 01234554322110 000
Q ss_pred -ccccCCCCccHHHHHhhcc-----ccccCCCCCCCCceEEEeccCCCCCCCeeeechHH-HHHHHHHHHHHhhCCCCCE
Q 046637 154 -TVASSSGNLEYESLLAIGK-----LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRG-AYLNSLAAALFNEMGLMPT 226 (301)
Q Consensus 154 -~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~-l~~~~~~~~~~~~~~~~~~ 226 (301)
......+...|.+++.... .........++++++|+|||||||.||||+++|.+ +...............+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~ 298 (647)
T PTZ00237 219 ETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTV 298 (647)
T ss_pred cccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcE
Confidence 0001112345666654321 10112235678999999999999999999999998 4443333344456677899
Q ss_pred EEEeccchhhhhhHHHHHHHHhCCeEEeeCC--CC----HHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 227 YLWCVPMFHCNGWCLTWAVAAQGGTNVCQRT--VN----AKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 227 ~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~--~~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+++..|++|+.+...++.++..|+++++.+. +. +..+++.++++++|+++++|++++.|++..
T Consensus 299 ~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 367 (647)
T PTZ00237 299 VFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTD 367 (647)
T ss_pred EEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhC
Confidence 9999999999776678889999999999764 12 688999999999999999999999999753
No 48
>PRK05857 acyl-CoA synthetase; Validated
Probab=100.00 E-value=5.8e-37 Score=280.88 Aligned_cols=281 Identities=19% Similarity=0.182 Sum_probs=214.8
Q ss_pred CCcccccCCCCCCCCHHHHHHHHhhhcCCccEEEECC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH
Q 046637 1 MEGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGD--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMY 78 (301)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~ 78 (301)
|+....-+.+..+.++.+.|.+.++++|+++|+++.+ +.+||+||.+++.++|+.|.+.|+++|++|+++++|+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~ 80 (540)
T PRK05857 1 MGGKKFQAMPQLPSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETY 80 (540)
T ss_pred CCcccccccccCCcchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHH
Confidence 3433444556668899999999999999999998643 58999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccC
Q 046637 79 ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASS 158 (301)
Q Consensus 79 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 158 (301)
+++|||+++|++++|+++..+.+++.++++.++++++++++..........+... ..+. +.++......
T Consensus 81 ~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~------ 149 (540)
T PRK05857 81 LSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALH----SIPV-IAVDIAAVTR------ 149 (540)
T ss_pred HHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcccccccccc----ccce-eEeecccccc------
Confidence 9999999999999999999999999999999999999998765432211111111 2222 2222211000
Q ss_pred CCCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH----HhhCCCCCEEEEeccch
Q 046637 159 SGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL----FNEMGLMPTYLWCVPMF 234 (301)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~l~~~p~~ 234 (301)
.+.+....... .......++++++++|||||||.||||.+||.++.++...... .+....+++.++..|++
T Consensus 150 ----~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 224 (540)
T PRK05857 150 ----ESEHSLDAASL-AGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPAT 224 (540)
T ss_pred ----ccccccccccc-ccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCcc
Confidence 00000000000 1112356789999999999999999999999999876543221 23455678999999999
Q ss_pred hhhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 235 HCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 235 h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
|.+|+...+.++..|+++++ .+.++..+++.++++++|+++++|++++.|++.......++++
T Consensus 225 h~~~l~~~~~~l~~G~~~v~-~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~ 287 (540)
T PRK05857 225 HIGGLWWILTCLMHGGLCVT-GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPS 287 (540)
T ss_pred ccchHHHHHHHhhcceeEEe-cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCcc
Confidence 99998878888999998775 4568899999999999999999999999998876554444443
No 49
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=100.00 E-value=2.8e-36 Score=275.71 Aligned_cols=279 Identities=19% Similarity=0.239 Sum_probs=222.6
Q ss_pred CCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 9 ANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
--|...++.++|++.++++|+++|+++.++.+||+|+.+.++++|..|.+.|+++|++|+++++|++++++++|||+++|
T Consensus 18 ~~~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G 97 (527)
T TIGR02275 18 GYWQDKPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLG 97 (527)
T ss_pred CcccCCcHHHHHHHHHHHCCCceEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcC
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhh-HHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPI-AQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
++++++++..+.+++.++++.+++++++++...... ..+.........+.++.++....... ...+...
T Consensus 98 ~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 167 (527)
T TIGR02275 98 IAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV----------EAELFLW 167 (527)
T ss_pred eEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC----------cchhhHH
Confidence 999999999999999999999999999998664321 11111111111112333443322100 0111111
Q ss_pred HhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH--HHHH
Q 046637 168 LAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL--TWAV 245 (301)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~--~~~~ 245 (301)
..............++++++|+|||||||.||||++||.++..+.......+.+..+|++++.+|++|.+|+.. .+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~ 247 (527)
T TIGR02275 168 LESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGV 247 (527)
T ss_pred hhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHH
Confidence 11111111122456789999999999999999999999999988887777788889999999999999999764 6778
Q ss_pred HHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 246 AAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 246 l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
+..|+++++.+.+++..+++.++++++|++.++|++++.+++.......+++
T Consensus 248 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~ 299 (527)
T TIGR02275 248 FYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLS 299 (527)
T ss_pred HhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCcc
Confidence 9999999998889999999999999999999999999999887665544443
No 50
>PRK06839 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.9e-36 Score=274.86 Aligned_cols=261 Identities=21% Similarity=0.339 Sum_probs=217.5
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
..+.+.|++.++.+||++|++++++.+||+||.++++++|+.|.+ .|+++|++|+++++|+++++++++||+++|++++
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~ 81 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV 81 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEECCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEE
Confidence 357889999999999999999999999999999999999999985 7999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcc
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGK 172 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (301)
|+++..+.+++..+++.++++++++++.......+..... ....++.+.+ +.+......
T Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----------------~~~~~~~~~ 140 (496)
T PRK06839 82 PLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVS-----YVQRVISITS----------------LKEIEDRKI 140 (496)
T ss_pred ecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhcc-----CcceEEEecc----------------hHhhhccCC
Confidence 9999999999999999999999999877655544432221 1233333322 111111111
Q ss_pred ccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCCe
Q 046637 173 LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGT 251 (301)
Q Consensus 173 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~ 251 (301)
.......++++++|+|||||||.||+|.++|.++..+.......+.+..++++++..|++|.+|+.. .+.++..|++
T Consensus 141 --~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~ 218 (496)
T PRK06839 141 --DNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGV 218 (496)
T ss_pred --CCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcE
Confidence 1112355688999999999999999999999999877766666778889999999999999999775 5778999999
Q ss_pred EEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 252 NVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 252 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
+++.+.+++..+++.++++++|++.++|++++.+++.......+++
T Consensus 219 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 264 (496)
T PRK06839 219 IIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQ 264 (496)
T ss_pred EEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCc
Confidence 9998899999999999999999999999999999987665554444
No 51
>PRK07638 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.6e-36 Score=274.81 Aligned_cols=249 Identities=16% Similarity=0.140 Sum_probs=210.0
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
|++.+.|++.++++||++|+++.++.+||.|+.+++.++|..|.+.|. +|++|+|+++|++++++++|||+++|++++|
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 79 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVP 79 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecCCcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence 578899999999999999999999999999999999999999999984 8999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccc
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL 173 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
+++.++.+++.++++.+++++++++......+... . ..++.++. +.+.......
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~---------~-~~~~~~~~----------------~~~~~~~~~~ 133 (487)
T PRK07638 80 LDIKWKQDELKERLAISNADMIVTERYKLNDLPDE---------E-GRVIEIDE----------------WKRMIEKYLP 133 (487)
T ss_pred cCccCCHHHHHHHHHhCCCCEEEEecccccchhhc---------c-ceEEEehh----------------hhhhhhhccc
Confidence 99999999999999999999999987654332210 1 12222221 1111111111
Q ss_pred cccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEE
Q 046637 174 REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNV 253 (301)
Q Consensus 174 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v 253 (301)
.........+++++|+|||||||.||||+++|.+++.++......+++.++|+++...|++|..++...+.++..|++++
T Consensus 134 ~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~ 213 (487)
T PRK07638 134 TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVH 213 (487)
T ss_pred cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEE
Confidence 11111233467899999999999999999999999988888878888899999999999999988777888999999999
Q ss_pred eeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 254 CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 254 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+.+.+++..+++.++++++|++.++|+++..|.+..
T Consensus 214 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 249 (487)
T PRK07638 214 LMRKFIPNQVLDKLETENISVMYTVPTMLESLYKEN 249 (487)
T ss_pred EcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc
Confidence 999999999999999999999999999999999763
No 52
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=2.8e-36 Score=278.51 Aligned_cols=274 Identities=25% Similarity=0.333 Sum_probs=223.6
Q ss_pred CCCCCHHHHHHHHhhhcCCccEEEECC---eeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 11 YVPLTPISFLERSAVVYRDRPSVVYGD---VQYTWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~al~~~~---~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
+.++++.++|+..+..+|+++|+++++ +.+||+|+.+++.++|+.|.+ .|+++||+|+++++|+++++++++||++
T Consensus 7 ~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~ 86 (576)
T PRK05620 7 DVPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVAC 86 (576)
T ss_pred cCCCcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHh
Confidence 345799999999999999999998754 799999999999999999986 7999999999999999999999999999
Q ss_pred ccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCc--ccccCCCCccH
Q 046637 87 AGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVS--TVASSSGNLEY 164 (301)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~ 164 (301)
+|+++++++|..+.+++.++++.++++++|++....+.+.+.....+ ..+.++.++....... ..........|
T Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (576)
T PRK05620 87 MGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECP----CVRAVVFIGPSDADSAAAHMPEGIKVYSY 162 (576)
T ss_pred cCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCc----cccEEEEecCcccccchhccccccccccH
Confidence 99999999999999999999999999999999877776666655443 4455555543211100 00111223457
Q ss_pred HHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHH--HHHhhCCCCCEEEEeccchhhhhhHHH
Q 046637 165 ESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAA--ALFNEMGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
.++.+............++++++++|||||||.||||+++|.++....... ...+.+..++++++..|++|.+|+...
T Consensus 163 ~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~ 242 (576)
T PRK05620 163 EALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVP 242 (576)
T ss_pred HHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHH
Confidence 777654333222234567899999999999999999999999986554432 234677889999999999999998888
Q ss_pred HHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 243 WAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 243 ~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+.++..|+++++.+ .+++..+++.++++++|+++.+|+++..++..
T Consensus 243 ~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 289 (576)
T PRK05620 243 LAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVH 289 (576)
T ss_pred HHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHH
Confidence 88999999998875 57999999999999999999999999988764
No 53
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=100.00 E-value=5.4e-36 Score=274.54 Aligned_cols=272 Identities=24% Similarity=0.250 Sum_probs=219.7
Q ss_pred CCCCCHHHHHHHHhhhcCCccEEEE------CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHh
Q 046637 11 YVPLTPISFLERSAVVYRDRPSVVY------GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGV 84 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~al~~------~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~ 84 (301)
|...++.+.|++.++.+|+++|+++ .++.+||+||.+++.++|..|.+.|+++|++|+++++|++++++++|||
T Consensus 19 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~ 98 (538)
T TIGR03208 19 WRDRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC 98 (538)
T ss_pred cccCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 4467899999999999999999986 2368999999999999999999999999999999999999999999999
Q ss_pred hhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchh-----hHHHHHHHhccccCCCCceEEccCCCCCCcccccCC
Q 046637 85 PMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP-----IAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSS 159 (301)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 159 (301)
+++|++++|++|..+.+++.++++.++++++++++.... ...+.....+ ....++..+....
T Consensus 99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 165 (538)
T TIGR03208 99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLP----ALRQVVVIDGDGD--------- 165 (538)
T ss_pred HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCC----cceEEEEecCCCC---------
Confidence 999999999999999999999999999999999876532 1111111111 3344555443211
Q ss_pred CCccHHHHHhhcccc--------ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEec
Q 046637 160 GNLEYESLLAIGKLR--------EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCV 231 (301)
Q Consensus 160 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~ 231 (301)
..++.++...... .......++++++|+|||||||.||||+++|.++...+......+++..++++++..
T Consensus 166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~ 243 (538)
T TIGR03208 166 --DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMAS 243 (538)
T ss_pred --cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeC
Confidence 2233332211100 011235678999999999999999999999999999888888888888999999999
Q ss_pred cchhhhhhH-HHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 232 PMFHCNGWC-LTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 232 p~~h~~g~~-~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
|++|.+|+. .++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+.......+++
T Consensus 244 pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~ 310 (538)
T TIGR03208 244 PMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVP 310 (538)
T ss_pred CchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCC
Confidence 999999876 478889999999998889999999999999999999999999998865443333333
No 54
>PRK07470 acyl-CoA synthetase; Validated
Probab=100.00 E-value=6.6e-36 Score=273.39 Aligned_cols=274 Identities=25% Similarity=0.317 Sum_probs=221.8
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.-..+++.++|.+.++++|+++|+.+.++.+||+|+.+.+.++|..|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus 3 ~~~~~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~ 82 (528)
T PRK07470 3 SRRVMNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGA 82 (528)
T ss_pred cccCCCHHHHHHHHHHHCCCceEEEECCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCe
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHh
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLA 169 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (301)
+++++++..+.+++.++++.++++++++++...+.......... ....++.++... ....+.++..
T Consensus 83 ~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----------~~~~~~~~~~ 148 (528)
T PRK07470 83 VWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASP----DLTHVVAIGGAR----------AGLDYEALVA 148 (528)
T ss_pred EEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCC----cCceEEEeCCCc----------ccccHHHHHh
Confidence 99999999999999999999999999999877655554443322 344555544321 1134555544
Q ss_pred hcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh--hCCCCCEEEEeccchhhhhhHHHHHHH
Q 046637 170 IGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN--EMGLMPTYLWCVPMFHCNGWCLTWAVA 246 (301)
Q Consensus 170 ~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~l~~~p~~h~~g~~~~~~~l 246 (301)
..... .......++++++|+|||||||.||+|.++|.++........... +...+|+++...|++|.+|+...+ .+
T Consensus 149 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~ 227 (528)
T PRK07470 149 RHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC-QV 227 (528)
T ss_pred cCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHH-HH
Confidence 32211 122345678999999999999999999999999976554433222 456789999999999999987544 56
Q ss_pred HhCCeEEeeC--CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 247 AQGGTNVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 247 ~~g~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
..|++.++.+ .++++.+++.++++++|++.++|++++.+.+.+.....++++
T Consensus 228 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 281 (528)
T PRK07470 228 ARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSS 281 (528)
T ss_pred hcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcc
Confidence 7788877765 578999999999999999999999999999877655555443
No 55
>PRK13388 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=3.2e-36 Score=275.94 Aligned_cols=256 Identities=26% Similarity=0.304 Sum_probs=211.8
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGI-SPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
+.++.++|..++ .|+++|+++.+..+||+||.++++++|..|.+.|+ ++|++|+++++|+++++++++||+++|+++
T Consensus 2 ~~~~~~~l~~~~--~p~~~Al~~~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~ 79 (540)
T PRK13388 2 RDTIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVL 79 (540)
T ss_pred chhHHHHHHhhc--cCCceEEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEE
Confidence 356788887764 69999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+|++|.++.+++.++++.+++++++++.+....+.+.. .+ .. .++.++. ..+.+++...
T Consensus 80 v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~----~~-~~i~~~~--------------~~~~~~~~~~ 138 (540)
T PRK13388 80 VGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LP----GV-RVLDVDT--------------PAYAELVAAA 138 (540)
T ss_pred EEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--cc----Cc-eEEEccc--------------hhhhhhhccc
Confidence 99999999999999999999999999876654433321 11 22 2333322 1222332211
Q ss_pred cccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCC
Q 046637 172 KLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGG 250 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~ 250 (301)
..........++++++++|||||||.||||.++|.++..........+++..+|+++...|++|.+|+.. ++.++..|+
T Consensus 139 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~ 218 (540)
T PRK13388 139 GALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGA 218 (540)
T ss_pred cCcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCc
Confidence 1111112356789999999999999999999999999888887778888999999999999999999875 455788999
Q ss_pred eEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCC
Q 046637 251 TNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291 (301)
Q Consensus 251 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 291 (301)
++++.+.+++..+++.++++++|++..+|..+..++..+..
T Consensus 219 ~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~ 259 (540)
T PRK13388 219 AVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPER 259 (540)
T ss_pred EEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC
Confidence 99998889999999999999999999999999999876543
No 56
>PRK06178 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.2e-35 Score=273.98 Aligned_cols=282 Identities=21% Similarity=0.180 Sum_probs=221.6
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
+.+..++.+.|+..++.+||++|+.+.++.+||+||.+++.++|..|.+.|+++|++|+++++|++++++++|||+++|+
T Consensus 29 ~~~~~~l~~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 108 (567)
T PRK06178 29 PHGERPLTEYLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGA 108 (567)
T ss_pred CcCcccHHHHHHHHHHHCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCe
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCc--c----cccC---CC
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVS--T----VASS---SG 160 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~----~~~~---~~ 160 (301)
+++|++|..+.+++.++++.++++++++++...+.+.+..... ....++..+....... . .... ..
T Consensus 109 ~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (567)
T PRK06178 109 VHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET-----SLRHVIVTSLADVLPAEPTLPLPDSLRAPRLA 183 (567)
T ss_pred EEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC-----CcceEEEecccccccccccccccccccccccc
Confidence 9999999999999999999999999999988766655543321 2344443321110000 0 0000 00
Q ss_pred CccHHHHHhhcc---ccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH-HhhCCCCCEEEEeccchhh
Q 046637 161 NLEYESLLAIGK---LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL-FNEMGLMPTYLWCVPMFHC 236 (301)
Q Consensus 161 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~l~~~p~~h~ 236 (301)
...+.++..... .........++++++|+|||||||.||+|++||.++..+...... ......++++++.+|++|.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 263 (567)
T PRK06178 184 AAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWI 263 (567)
T ss_pred ccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHH
Confidence 011222222111 111223356789999999999999999999999999876554433 3567788999999999999
Q ss_pred hhhH-HHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccc
Q 046637 237 NGWC-LTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRF 296 (301)
Q Consensus 237 ~g~~-~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 296 (301)
+|+. .++.++..|+++++.+++++..+++.++++++|.+..+|..+..+++.+.....++
T Consensus 264 ~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l 324 (567)
T PRK06178 264 AGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDL 324 (567)
T ss_pred HHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCc
Confidence 9976 47778999999999999999999999999999999999999999987655444443
No 57
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=100.00 E-value=4.1e-36 Score=277.03 Aligned_cols=264 Identities=26% Similarity=0.314 Sum_probs=216.7
Q ss_pred CCHH-HHHHHHhh-hcCCccEEEECC----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhc
Q 046637 14 LTPI-SFLERSAV-VYRDRPSVVYGD----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMA 87 (301)
Q Consensus 14 ~~~~-~~l~~~~~-~~~~~~al~~~~----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 87 (301)
.++. +.+.+.++ .+|+++|+.+.+ +.+||+||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~ 121 (570)
T PRK04319 42 VNIAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKN 121 (570)
T ss_pred eeHHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 3444 67888776 589999999753 68999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 88 GAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
|++++|+++.++.+++.++++.+++++++++......... ...+ .++.++.++.... ...+...+.++
T Consensus 122 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~ 189 (570)
T PRK04319 122 GAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLP----SLKHVLLVGEDVE------EGPGTLDFNAL 189 (570)
T ss_pred CcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCC----CceEEEEECCCcC------CCcCccCHHHH
Confidence 9999999999999999999999999999998765443221 1111 3445555543221 11223456665
Q ss_pred HhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH-HHHHHH
Q 046637 168 LAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC-LTWAVA 246 (301)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~-~~~~~l 246 (301)
..............++++++|+|||||||.||||+++|.+++.+.......+++.++|++++..|++|.+|.. .++.++
T Consensus 190 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l 269 (570)
T PRK04319 190 MEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPW 269 (570)
T ss_pred HhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHH
Confidence 5443332222335678999999999999999999999999998888777788889999999999999999866 478889
Q ss_pred HhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 247 AQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 247 ~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
..|+++++.+ .+++..+++.++++++|+++++|++++.|++..
T Consensus 270 ~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 313 (570)
T PRK04319 270 LNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAG 313 (570)
T ss_pred hcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcC
Confidence 9999998875 689999999999999999999999999998764
No 58
>PRK06188 acyl-CoA synthetase; Validated
Probab=100.00 E-value=8e-36 Score=272.63 Aligned_cols=273 Identities=21% Similarity=0.263 Sum_probs=222.5
Q ss_pred CCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 11 YVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.++.++.++|.+.++++|+++|+++.++.+||+||.+.+.+++..|.+.|+++|++|+++++|++++++++|||++.|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~ 88 (524)
T PRK06188 9 HSGATYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLR 88 (524)
T ss_pred cCCccHHHHHHHHHHHCCCCeEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCE
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCC-chhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHh
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ-LLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLA 169 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (301)
+++++|..+.+++.++++.++++.+++++. ......+...... ....++.++.... .....+...
T Consensus 89 ~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----------~~~~~~~~~ 154 (524)
T PRK06188 89 RTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVP----SLKHVLTLGPVPD----------GVDLLAAAA 154 (524)
T ss_pred EEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcC----CceEEEEeCCccc----------hhhHHHhhh
Confidence 999999999999999999999999999876 3333333222221 3344444433211 001111111
Q ss_pred hccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhC
Q 046637 170 IGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQG 249 (301)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g 249 (301)
............++++++|+|||||||.||+|.++|.++..........+++..++++++..|++|.+|+. .+.++..|
T Consensus 155 ~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G 233 (524)
T PRK06188 155 KFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FLPTLLRG 233 (524)
T ss_pred ccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HHHHHHcC
Confidence 11111111223445699999999999999999999999999888888888899999999999999998875 56778999
Q ss_pred CeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 250 GTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 250 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
+++++.+.+++..+++.++++++|++.++|+++..+++.+.....++++
T Consensus 234 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~ 282 (524)
T PRK06188 234 GTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSS 282 (524)
T ss_pred CEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcc
Confidence 9999999999999999999999999999999999999887665555544
No 59
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=7.1e-36 Score=273.72 Aligned_cols=278 Identities=29% Similarity=0.377 Sum_probs=223.2
Q ss_pred CCHHHHHHHHhhhcCCccEEEEC--C--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 14 LTPISFLERSAVVYRDRPSVVYG--D--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~--~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.++.++|+..++.+|+++++.+. + +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~ 89 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGA 89 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence 46889999999999999998752 2 5899999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHh
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLA 169 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (301)
+++|++|..+.+++..+++.+++++++++.+..+.+.+...... .++.++.+++...... .......++++..
T Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~ 162 (539)
T PRK07008 90 VCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCP----NVKGWVAMTDAAHLPA---GSTPLLCYETLVG 162 (539)
T ss_pred EEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCC----CceEEEEEccCCcccc---CCcccccHHHHhc
Confidence 99999999999999999999999999999877666555544333 4445554443321110 0122355666654
Q ss_pred hccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHH--HHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHH
Q 046637 170 IGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSL--AAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAA 247 (301)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~--~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~ 247 (301)
............++++++++|||||||.||+|++||.+++.+.. .....+++..+|++++..|++|.+++...+.++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~ 242 (539)
T PRK07008 163 AQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPL 242 (539)
T ss_pred ccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHh
Confidence 33322222345678899999999999999999999999865432 2334567788999999999999988877788899
Q ss_pred hCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 248 QGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 248 ~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
.|+++++.+ .+++..+++.++++++|++.++|+++..+++.......++++
T Consensus 243 ~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~ 294 (539)
T PRK07008 243 TGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFST 294 (539)
T ss_pred cCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCccc
Confidence 999999874 679999999999999999999999999999876655555544
No 60
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.2e-35 Score=272.49 Aligned_cols=279 Identities=25% Similarity=0.358 Sum_probs=223.1
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEE--CC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhc
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVY--GD--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMA 87 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~--~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 87 (301)
.+.++.++|+.+++++||+++++. .+ +++||+||.+.++++|+.|.+.|+++||+|+++++|++++++++|||+++
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~ 87 (542)
T PRK06018 8 WPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGI 87 (542)
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhc
Confidence 356999999999999999999985 23 68999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 88 GAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
|++++|++|..+.+++.++++.++++.++++.+....+.+.....+ ..+.++.+.+.... ......+...+.++
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 161 (542)
T PRK06018 88 GAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLP----SVERYVVLTDAAHM--PQTTLKNAVAYEEW 161 (542)
T ss_pred CeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCC----CccEEEEecccccc--cccCccccccHHHH
Confidence 9999999999999999999999999999999888777666554443 44555554432111 11111233456665
Q ss_pred HhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHH-HHH-HHHHHHhhCCCCCEEEEeccchhhhhhHHHHHH
Q 046637 168 LAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAY-LNS-LAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAV 245 (301)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~-~~~-~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~ 245 (301)
...............+++++|+|||||||.||||.+||.+++ ... ......+++..+|+++...|++|.+++...+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~ 241 (542)
T PRK06018 162 IAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSA 241 (542)
T ss_pred hccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhh
Confidence 544332222233566789999999999999999999999743 222 223445677889999999999999998877788
Q ss_pred HHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccc
Q 046637 246 AAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRF 296 (301)
Q Consensus 246 l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 296 (301)
+..|+++++.. .+++..+++.++++++|++.++|++++.|.+.......++
T Consensus 242 ~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~ 293 (542)
T PRK06018 242 PSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKL 293 (542)
T ss_pred hhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCc
Confidence 99999998874 6789999999999999999999999999987655443343
No 61
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=100.00 E-value=1e-35 Score=277.68 Aligned_cols=265 Identities=21% Similarity=0.263 Sum_probs=201.3
Q ss_pred HHHHHhhhcCCccEEEECC-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 19 FLERSAVVYRDRPSVVYGD-----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 19 ~l~~~~~~~~~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
+.+...+..++++|+++.+ +.+||+||.+++.++|..|+++|+++||+|+++++|++++++++|||+++|++++|
T Consensus 89 ~~~~~~~~~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp 168 (652)
T TIGR01217 89 YAENLLRAAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSS 168 (652)
T ss_pred HHHHHhccCCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEe
Confidence 3334444467899998843 58999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCch---------hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccH
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLL---------PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEY 164 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 164 (301)
+++.++.+++.+++++++++++|+++... ..+.+.....+ .++.+++++.............+...|
T Consensus 169 ~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~ 244 (652)
T TIGR01217 169 CSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELP----TLRAVVHIPYLGPRETEAPKIDGALDL 244 (652)
T ss_pred cCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCC----CccEEEEEeCCCCcccccccccCcccH
Confidence 99999999999999999999999987542 23333333222 455566554322100000011123456
Q ss_pred HHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHH-HHHHHHHHhhCCCCCEEEEeccchhhhhhHHH
Q 046637 165 ESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYL-NSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 165 ~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
+++....... ........+++++|+|||||||.||||+++|.+++. ........+++.++|++++..|+.|+.+ ..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~ 323 (652)
T TIGR01217 245 EDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-NWL 323 (652)
T ss_pred HHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-HHH
Confidence 7665442111 111234568999999999999999999999998654 3444555678889999999999998754 335
Q ss_pred HHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 243 WAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 243 ~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+.++..|+++++.++ +++..+++.++++++|++.++|++++.+.+.
T Consensus 324 ~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~ 373 (652)
T TIGR01217 324 VSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKA 373 (652)
T ss_pred HHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhc
Confidence 678999999999852 3788999999999999999988888887654
No 62
>PRK08315 AMP-binding domain protein; Validated
Probab=100.00 E-value=2e-35 Score=272.04 Aligned_cols=285 Identities=26% Similarity=0.376 Sum_probs=226.0
Q ss_pred ccCCCCCCCCHHHHHHHHhhhcCCccEEEE--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Q 046637 6 RCSANYVPLTPISFLERSAVVYRDRPSVVY--GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFG 83 (301)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 83 (301)
...++....++.+.|.+.++++|+++|+++ .++.+||+||.+.+.++|..|.+.|+++|++|+++++|++++++++||
T Consensus 8 ~~~~~~~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la 87 (559)
T PRK08315 8 PTDVPLLEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFA 87 (559)
T ss_pred CCcCChhhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHH
Confidence 445667788999999999999999999998 457899999999999999999999999999999999999999999999
Q ss_pred hhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchh-----hHHHHHHHhcc---------ccCCCCceEEccCCC
Q 046637 84 VPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP-----IAQGAFEILSK---------TSAKLPLLVLVPECG 149 (301)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~---------~~~~~~~i~~~~~~~ 149 (301)
|+++|++++|++|..+.+++..+++.++++++++++.... .+.+....... ..+..+.++.++...
T Consensus 88 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (559)
T PRK08315 88 TAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK 167 (559)
T ss_pred HHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccC
Confidence 9999999999999999999999999999999999875432 12222111100 001123333333221
Q ss_pred CCCcccccCCCCccHHHHHhhcccc------ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCC
Q 046637 150 EPVSTVASSSGNLEYESLLAIGKLR------EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGL 223 (301)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~ 223 (301)
..+...+.++....... ........+++++++|||||||.||+|.+||.++..++......+++.+
T Consensus 168 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~ 239 (559)
T PRK08315 168 --------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTE 239 (559)
T ss_pred --------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCC
Confidence 11223455544322111 1122345688999999999999999999999999988888888889999
Q ss_pred CCEEEEeccchhhhhhHH-HHHHHHhCCeEEee-CCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 224 MPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 224 ~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
+|+++...|++|.+|+.. ++.++..|+++++. ..+++..+++.++++++|++.++|+++..++..+.....++++
T Consensus 240 ~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~ 316 (559)
T PRK08315 240 EDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSS 316 (559)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchh
Confidence 999999999999999765 67889999999854 5789999999999999999999999999998876655444443
No 63
>PRK07514 malonyl-CoA synthase; Validated
Probab=100.00 E-value=2.1e-35 Score=268.69 Aligned_cols=267 Identities=21% Similarity=0.263 Sum_probs=219.7
Q ss_pred CCCHHHHHHHHhhhcCCccEEEE-CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVY-GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~-~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
..++.+++..++ .+|+++|+.+ +++.+||+||.+.+.++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 2 ~~~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~ 80 (504)
T PRK07514 2 NNNLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVF 80 (504)
T ss_pred CccHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 467899999999 9999999998 56799999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+|+++..+.+++..+++.++++++++++.....+....... ....++.++.... ..+.+.....
T Consensus 81 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----------~~~~~~~~~~ 144 (504)
T PRK07514 81 LPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA-----GAPHVETLDADGT-----------GSLLEAAAAA 144 (504)
T ss_pred EECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc-----CCceEEEecCCCc-----------ccHHHhhhhc
Confidence 99999999999999999999999999987765554433221 2233444443211 1222222111
Q ss_pred cccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCC
Q 046637 172 KLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGG 250 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~ 250 (301)
..........++++++|+|||||||.||+|.+||.++...+......+++.++|++++..|++|.+|+.. .+.++..|+
T Consensus 145 ~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 224 (504)
T PRK07514 145 PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGA 224 (504)
T ss_pred CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCc
Confidence 1111123356789999999999999999999999999998888777888899999999999999999764 678899999
Q ss_pred eEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 251 TNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 251 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
++++.+.+++..+++.+. ++|++..+|.++..+++.+.....++++
T Consensus 225 ~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 270 (504)
T PRK07514 225 SMIFLPKFDPDAVLALMP--RATVMMGVPTFYTRLLQEPRLTREAAAH 270 (504)
T ss_pred EEEECCCCCHHHHHHHHH--hheeeecHHHHHHHHHcCCCCCcccccc
Confidence 999999999999999994 7999999999999999876655544443
No 64
>PRK06145 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.9e-35 Score=268.41 Aligned_cols=263 Identities=27% Similarity=0.329 Sum_probs=216.3
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
+++.+.|.+.++++|+++|+++.++.+||.||.+.+.++|..|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (497)
T PRK06145 2 FNLSASIAFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLP 81 (497)
T ss_pred ccHHHHHHHHHHHCCCceEEEECCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccc
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL 173 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
+++..+.+++.++++.+++++++++........ .....+.++.... ..+..+......
T Consensus 82 l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 139 (497)
T PRK06145 82 INYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-----------LETPKIVIDAAAQ-----------ADSRRLAQGGLE 139 (497)
T ss_pred cccccCHHHHHHHHHhcCCcEEEEccchhhhhh-----------cccceEEecCccc-----------chhHHHhccCCC
Confidence 999999999999999999999999866543211 0112222222110 011111111111
Q ss_pred cccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCCeE
Q 046637 174 REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGTN 252 (301)
Q Consensus 174 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~ 252 (301)
........++++++++|||||||.||+|.+||.++..........+++..+++++...|++|.+++.. .+.++..|+++
T Consensus 140 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~ 219 (497)
T PRK06145 140 IPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTL 219 (497)
T ss_pred CCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEE
Confidence 11222356789999999999999999999999999877766666778899999999999999999865 57778999999
Q ss_pred EeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 253 VCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 253 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
++.+.+++..+++.++++++|++.++|++++.+++.......++++
T Consensus 220 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~ 265 (497)
T PRK06145 220 RIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDS 265 (497)
T ss_pred EECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcccccccc
Confidence 9999999999999999999999999999999999876655555443
No 65
>PRK12583 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=4.4e-35 Score=269.70 Aligned_cols=285 Identities=24% Similarity=0.323 Sum_probs=223.6
Q ss_pred cccCCCCCCCCHHHHHHHHhhhcCCccEEEE--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 5 IRCSANYVPLTPISFLERSAVVYRDRPSVVY--GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
+....+....++.++|++.++++|+++|+++ .++.+||+||.+.+.++|..|.+.|+++|++|+++++|++++++++|
T Consensus 9 ~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~ 88 (558)
T PRK12583 9 GGGDKPLLTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQF 88 (558)
T ss_pred CCCCCCcccCcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHH
Confidence 3444556678999999999999999999988 45789999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch-----hhHHHHHHHhcc---------ccCCCCceEEccCC
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL-----PIAQGAFEILSK---------TSAKLPLLVLVPEC 148 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~---------~~~~~~~i~~~~~~ 148 (301)
||+++|++++++++..+.+++..+++.++++++++++... ..+.+....... ..+.+..++..+..
T Consensus 89 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (558)
T PRK12583 89 ATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA 168 (558)
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCC
Confidence 9999999999999999999999999999999999976532 122222111110 00012233333222
Q ss_pred CCCCcccccCCCCccHHHHHhhcccc------ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCC
Q 046637 149 GEPVSTVASSSGNLEYESLLAIGKLR------EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMG 222 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~ 222 (301)
. ..+...|++........ .......++++++++|||||||.||+|.++|.++..++......+++.
T Consensus 169 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~ 240 (558)
T PRK12583 169 P--------PPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLT 240 (558)
T ss_pred C--------CccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCC
Confidence 1 11223454443322211 112234578899999999999999999999999998888887888899
Q ss_pred CCCEEEEeccchhhhhhHH-HHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 223 LMPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 223 ~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
.+|++++..|++|.+|... .+.++..|+++++.. .+++..+++.++++++|++.++|+++..+++.......+++
T Consensus 241 ~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~ 317 (558)
T PRK12583 241 EHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLS 317 (558)
T ss_pred CCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCch
Confidence 9999999999999999765 677788899888654 67999999999999999999999999999887655444443
No 66
>PRK12582 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.3e-35 Score=276.16 Aligned_cols=269 Identities=21% Similarity=0.211 Sum_probs=205.9
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCccEEEECC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Q 046637 8 SANYVPLTPISFLERSAVVYRDRPSVVYGD------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELH 81 (301)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 81 (301)
+......++.++|++.++++||++|+++.+ +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus 43 ~~~~~~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 122 (624)
T PRK12582 43 PLGPYPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMT 122 (624)
T ss_pred CCCCcccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHH
Confidence 334457789999999999999999998743 68999999999999999999999999999999999999999999
Q ss_pred HHhhhccceeeecCCCCCH-----HHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccc
Q 046637 82 FGVPMAGAVLCTLNTRHDS-----AMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVA 156 (301)
Q Consensus 82 lA~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 156 (301)
|||+++|++++|++|.++. +++.++++.++++++|+++... ........... ..+ ++.++....
T Consensus 123 lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~--~~~-~i~~~~~~~------ 191 (624)
T PRK12582 123 LAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAP--FARALAALDLL--DVT-VVHVTGPGE------ 191 (624)
T ss_pred HHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHH--HHHHHHhhhhc--Cce-EEEEcCCCc------
Confidence 9999999999999999875 8999999999999999986421 11111111100 122 333332211
Q ss_pred cCCCCccHHHHHhhcccc---ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCC---CCEEEEe
Q 046637 157 SSSGNLEYESLLAIGKLR---EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGL---MPTYLWC 230 (301)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~---~~~~l~~ 230 (301)
......+.++....... .......++++++|+|||||||.||||++||.++..+............ +++++..
T Consensus 192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 270 (624)
T PRK12582 192 -GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDW 270 (624)
T ss_pred -ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEe
Confidence 01123455554332211 1112345789999999999999999999999999887766544444443 5799999
Q ss_pred ccchhhhhhHH-HHHHHHhCCeEEeeC-CCCH---HHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 231 VPMFHCNGWCL-TWAVAAQGGTNVCQR-TVNA---KEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 231 ~p~~h~~g~~~-~~~~l~~g~~~v~~~-~~~~---~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+|++|.+|+.. ++.++..|+++++.+ .+++ ..+++.++++++|+++++|++++.|++.
T Consensus 271 lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~ 333 (624)
T PRK12582 271 MPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEA 333 (624)
T ss_pred chHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHH
Confidence 99999999765 567788999998876 3443 4567888999999999999999998764
No 67
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=100.00 E-value=2e-35 Score=270.59 Aligned_cols=262 Identities=21% Similarity=0.263 Sum_probs=215.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
.|.+.++.++|.+.++ ||++|+++.++.+||+|+.+.+.++|..|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus 21 ~~~~~~~~~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~ 98 (536)
T PRK10946 21 YWQDLPLTDILTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGV 98 (536)
T ss_pred eecCccHHHHHHHhhC--CCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCe
Confidence 3667889999999887 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchh-----hHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccH
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP-----IAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEY 164 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 164 (301)
+++++.+....+++..+++.++++++++++.... .........+ ....++..+... ...+
T Consensus 99 v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~-----------~~~~ 163 (536)
T PRK10946 99 APVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHS----SLRVVLLLNDDG-----------EHSL 163 (536)
T ss_pred EEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCC----CceEEEEecCCC-----------CccH
Confidence 9888888888899999999999999999865321 1111222111 233333332211 1234
Q ss_pred HHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH--H
Q 046637 165 ESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL--T 242 (301)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~--~ 242 (301)
.++..............++++++++|||||||.||||++||.++..++......+++..++++++.+|++|.+++.. .
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~ 243 (536)
T PRK10946 164 DDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGA 243 (536)
T ss_pred HHHhhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhH
Confidence 44443332222223456789999999999999999999999999999888888888999999999999999998763 6
Q ss_pred HHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 243 WAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 243 ~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+.++..|+++++.+.+++..+++.++++++|++.++|.+++.+++.
T Consensus 244 ~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~ 289 (536)
T PRK10946 244 LGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQA 289 (536)
T ss_pred HHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhh
Confidence 7789999999999889999999999999999999999999999875
No 68
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=100.00 E-value=2.5e-35 Score=274.77 Aligned_cols=268 Identities=18% Similarity=0.204 Sum_probs=208.7
Q ss_pred HHHHHHHhhhcCCccEEEEC------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 17 ISFLERSAVVYRDRPSVVYG------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 17 ~~~l~~~~~~~~~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.++|++.++.+|+++|+++. .+.+||+||.+++.++|..|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 56 ~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 135 (629)
T PRK10524 56 HNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAI 135 (629)
T ss_pred HHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence 57788888889999999972 368999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCCch---------hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL---------PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
++|++|.++.+++.+++++++++++|+++... +.+.+...... .....+++++...... .......
T Consensus 136 ~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vi~~~~~~~~~--~~~~~~~ 210 (629)
T PRK10524 136 HSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQ---HKPRHVLLVDRGLAPM--ARVAGRD 210 (629)
T ss_pred EEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcC---CCCCEEEEEeCCCCCc--CcccCCc
Confidence 99999999999999999999999999976432 22333322221 1234555555321100 0000112
Q ss_pred ccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHH-HHHHHhhCCCCCEEEEeccchhhhhh
Q 046637 162 LEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSL-AAALFNEMGLMPTYLWCVPMFHCNGW 239 (301)
Q Consensus 162 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~l~~~p~~h~~g~ 239 (301)
..+.++....... .......++++++|+|||||||.||||+++|.+++.... .....+++.++|++++..|+.|..|.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 290 (629)
T PRK10524 211 VDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGH 290 (629)
T ss_pred ccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccc
Confidence 3455554432211 111224578999999999999999999999999765443 34445678889999999999999886
Q ss_pred H-HHHHHHHhCCeEEeeC----CCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 240 C-LTWAVAAQGGTNVCQR----TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 240 ~-~~~~~l~~g~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
. .++.++..|+++++.+ .+++..+++.++++++|+++++|++++.|.+..
T Consensus 291 ~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 345 (629)
T PRK10524 291 SYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQD 345 (629)
T ss_pred hHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcC
Confidence 5 4788899999999876 357899999999999999999999999998764
No 69
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=100.00 E-value=3.3e-35 Score=275.02 Aligned_cols=258 Identities=24% Similarity=0.314 Sum_probs=202.0
Q ss_pred hcCCccEEEECC-----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCH
Q 046637 26 VYRDRPSVVYGD-----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDS 100 (301)
Q Consensus 26 ~~~~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~ 100 (301)
.+|+++|+++.+ +.+||+||.+++.++|..|.+.|+++||+|+++++|++++++++|||+++|++++|++|.++.
T Consensus 96 ~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~ 175 (655)
T PRK03584 96 RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGV 175 (655)
T ss_pred CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCH
Confidence 589999999854 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEEEcCCch---------hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 101 AMVSVLLRHSEAKIIFVDYQLL---------PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 101 ~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+++.++++.++++++|+++... ..+.+....++ .++.++.++..... ...........|.++....
T Consensus 176 ~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 250 (655)
T PRK03584 176 QGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP----SLEHVVVVPYLGPA-AAAAALPGALLWEDFLAPA 250 (655)
T ss_pred HHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCC----CccEEEEEecCCCc-ccccccCCcccHHHHhhcc
Confidence 9999999999999999987532 22222222222 44556655432210 0011112234566665522
Q ss_pred ccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHH-HHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhC
Q 046637 172 KLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLN-SLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQG 249 (301)
Q Consensus 172 ~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g 249 (301)
... ........+++++|+|||||||.||||++||.+++.+ .......+++.++|++++..++.|+.+. ..+.+++.|
T Consensus 251 ~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G 329 (655)
T PRK03584 251 EAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVG 329 (655)
T ss_pred ccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH-HHHHHHHcC
Confidence 221 1223356789999999999999999999999987644 4445566788899999999998887542 357889999
Q ss_pred CeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 250 GTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 250 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+++++.++ +++..+++.++++++|++.++|++++.+.+..
T Consensus 330 ~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 373 (655)
T PRK03584 330 ATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAG 373 (655)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcC
Confidence 99999852 58999999999999999999999999998753
No 70
>PRK09274 peptide synthase; Provisional
Probab=100.00 E-value=8.5e-36 Score=274.08 Aligned_cols=268 Identities=22% Similarity=0.182 Sum_probs=209.3
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEECCe----------eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYGDV----------QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELH 81 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~~~----------~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 81 (301)
...++.+.|++.++++|+++|+++.+. .+||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus 4 ~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~ 83 (552)
T PRK09274 4 SMANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALT 83 (552)
T ss_pred hhhhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHH
Confidence 457889999999999999999998654 8999999999999999999999999999999999999999999
Q ss_pred HHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 82 FGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 82 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
|||+++|++++|++|.++.+++.+++++++++++|+++.. ........... ...+.++.++... ..+.
T Consensus 84 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~---~~~~~~i~~~~~~--------~~~~ 151 (552)
T PRK09274 84 FALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKA-HLARRLFGWGK---PSVRRLVTVGGRL--------LWGG 151 (552)
T ss_pred HHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHH-HHHHHHhccCc---cchhheecccccc--------ccCC
Confidence 9999999999999999999999999999999999987521 11111111000 0223333333210 0111
Q ss_pred ccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH
Q 046637 162 LEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 162 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~ 240 (301)
..+.++....... .......++++++|+|||||||.||+|++||.++..++......+++.++++.++..|++|.+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~- 230 (552)
T PRK09274 152 TTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGP- 230 (552)
T ss_pred ccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhh-
Confidence 2344443211111 11223566899999999999999999999999999988888888889999999999999987653
Q ss_pred HHHHHHHhCCeEEeeC-------CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 241 LTWAVAAQGGTNVCQR-------TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 241 ~~~~~l~~g~~~v~~~-------~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
..|+++++.+ .+++..+++.++++++|+++++|++++.|.+.......++++
T Consensus 231 ------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~ 289 (552)
T PRK09274 231 ------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPS 289 (552)
T ss_pred ------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCch
Confidence 3577777754 468999999999999999999999999999875544445443
No 71
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=100.00 E-value=4e-35 Score=269.19 Aligned_cols=267 Identities=23% Similarity=0.293 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHhhhcCCccEEEEC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYG--DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.+++.+.+.+.++.+|+++|+.+. ++.+||+||.+++.++|..|.+.|+++|++|+++++|++++++++|||+++|++
T Consensus 27 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 106 (546)
T PLN02330 27 KLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGV 106 (546)
T ss_pred CCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcE
Confidence 478999999999999999999974 579999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhh
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAI 170 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (301)
++|+++..+.+++.++++.++++++++++.....+... ..+ ++.++... ..+...|.+++..
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---------~~~-~i~~~~~~--------~~~~~~~~~~~~~ 168 (546)
T PLN02330 107 FSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL---------GLP-VIVLGEEK--------IEGAVNWKELLEA 168 (546)
T ss_pred eccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc---------CCc-EEEecCCC--------CCCcccHHHHHhh
Confidence 99999999999999999999999999998766554321 122 33333221 1122456666544
Q ss_pred cccc---ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh--CCCCCEEEEeccchhhhhhH-HHHH
Q 046637 171 GKLR---EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE--MGLMPTYLWCVPMFHCNGWC-LTWA 244 (301)
Q Consensus 171 ~~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~l~~~p~~h~~g~~-~~~~ 244 (301)
.... .......++++++|+|||||||.||||.++|.++..+......... ....++.+...|++|.+|+. .++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~ 248 (546)
T PLN02330 169 ADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCA 248 (546)
T ss_pred ccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHH
Confidence 3221 1122345678999999999999999999999999876553221221 12346789999999999976 4677
Q ss_pred HHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 245 VAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 245 ~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
++..|+++++.+.+++..+++.++++++|.+.++|+++..+++.+.....++.
T Consensus 249 ~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~ 301 (546)
T PLN02330 249 TLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLS 301 (546)
T ss_pred HhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccc
Confidence 89999999999999999999999999999999999999999987665544443
No 72
>PRK07867 acyl-CoA synthetase; Validated
Probab=100.00 E-value=4.6e-35 Score=267.55 Aligned_cols=254 Identities=20% Similarity=0.229 Sum_probs=212.3
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHL-GISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
..++.++|.+.+. +|++++.+.++.+||+||.+++.++|.+|.+. |+++|++|+++++|+++++++++||+++|+++
T Consensus 4 ~~~~~~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~ 81 (529)
T PRK07867 4 APTVAELLLPLAE--DDDRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVP 81 (529)
T ss_pred cccHHHHHHHhcc--cCCceEEECCcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 4578899988775 78999999999999999999999999999997 89999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+|+++..+.+++.+++++++++++|+++.....+.... . .. .++.++. ..+.+++...
T Consensus 82 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~----~~-~~~~~~~--------------~~~~~~l~~~ 139 (529)
T PRK07867 82 VGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---P----GV-RVINVDS--------------PAWADELAAH 139 (529)
T ss_pred EEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---c----Cc-eEEEecc--------------ccHHHHhccc
Confidence 99999999999999999999999999977655433321 1 12 1222221 2233333322
Q ss_pred ccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhC
Q 046637 172 KLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQG 249 (301)
Q Consensus 172 ~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g 249 (301)
... .......++++++|+|||||||.||||++||.++..+.......+++..+|++++..|++|.+|+.. .+.++..|
T Consensus 140 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G 219 (529)
T PRK07867 140 RDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAG 219 (529)
T ss_pred CCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcC
Confidence 111 1222356789999999999999999999999999988888888888899999999999999999775 56678899
Q ss_pred CeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 250 GTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 250 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+++++.+.+++..+++.++++++|++.++|+.++.+++.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~ 260 (529)
T PRK07867 220 ASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPE 260 (529)
T ss_pred ceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC
Confidence 99999888999999999999999999999999999987654
No 73
>PRK07798 acyl-CoA synthetase; Validated
Probab=100.00 E-value=6.4e-35 Score=267.09 Aligned_cols=261 Identities=28% Similarity=0.322 Sum_probs=212.0
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
.++.++|++.++++||++|+.+.++.+||.||.+.++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 3 ~~l~~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~ 82 (533)
T PRK07798 3 WNIADLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVN 82 (533)
T ss_pred ccHHHHHHHHHHhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEe
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccc
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL 173 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
+++..+.+++.++++.+++++++++......+.+.....+ ..+.++.+++..... ...+...++++......
T Consensus 83 l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 154 (533)
T PRK07798 83 VNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLP----KLRTLVVVEDGSGND----LLPGAVDYEDALAAGSP 154 (533)
T ss_pred cCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCC----CccEEEEecCCcccc----cCCccccHHHHHhccCC
Confidence 9999999999999999999999999876666555433222 445566555432111 11133467776654333
Q ss_pred cccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---------hhC------CCCCEEEEeccchhhhh
Q 046637 174 REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---------NEM------GLMPTYLWCVPMFHCNG 238 (301)
Q Consensus 174 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---------~~~------~~~~~~l~~~p~~h~~g 238 (301)
..... ...++.++|+|||||||.||+|+++|.++.......... ..+ ..+++++...|++|.+|
T Consensus 155 ~~~~~-~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 233 (533)
T PRK07798 155 ERDFG-ERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAG 233 (533)
T ss_pred cCCCC-CCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhh
Confidence 22111 223445799999999999999999999987654432211 111 46788999999999999
Q ss_pred hHHHHHHHHhCCeEEeeC--CCCHHHHHHHHHhcCcceecCChHHHH
Q 046637 239 WCLTWAVAAQGGTNVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLN 283 (301)
Q Consensus 239 ~~~~~~~l~~g~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~ 283 (301)
+...+.++..|+++++.+ .+++..+++.++++++|.+.++|..+.
T Consensus 234 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~ 280 (533)
T PRK07798 234 QWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMA 280 (533)
T ss_pred HHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHH
Confidence 988899999999999998 889999999999999999999986553
No 74
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=100.00 E-value=1.3e-35 Score=296.83 Aligned_cols=257 Identities=17% Similarity=0.147 Sum_probs=218.0
Q ss_pred ccccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Q 046637 4 MIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 83 (301)
++....+++..++.++|++.++++||++|+++.++.+||+||.+++.++|+.|.+.|+++|++|+++++|++++++++||
T Consensus 448 ~~~~~~~~~~~~l~~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la 527 (1296)
T PRK10252 448 VNATAVEIPETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA 527 (1296)
T ss_pred hcCCCCCCCcCCHHHHHHHHHHhCCCCeEEEcCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 45555666778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCcc
Q 046637 84 VPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLE 163 (301)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 163 (301)
|+++|++++|++|..+.+++.++++.+++++++++.+....+.+. . .+. +...+...
T Consensus 528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~----~----~~~-~~~~~~~~-------------- 584 (1296)
T PRK10252 528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV----P----DLT-SLCYNAPL-------------- 584 (1296)
T ss_pred HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC----C----Cce-eeeccccc--------------
Confidence 999999999999999999999999999999999987654332111 0 111 11111100
Q ss_pred HHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHH
Q 046637 164 YESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTW 243 (301)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~ 243 (301)
.... ........++++++|+|||||||.||||+++|.++.+.+......+++.++|++++..|++|..++..++
T Consensus 585 -----~~~~-~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~ 658 (1296)
T PRK10252 585 -----APQG-AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFF 658 (1296)
T ss_pred -----cccc-CCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHH
Confidence 0000 0011123578999999999999999999999999999998888889999999999999999999988889
Q ss_pred HHHHhCCeEEeeC---CCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 244 AVAAQGGTNVCQR---TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 244 ~~l~~g~~~v~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
.++..|+++++.+ ..++..+++.++++++|++.++|++++.+++..
T Consensus 659 ~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~ 707 (1296)
T PRK10252 659 WPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASL 707 (1296)
T ss_pred HHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhh
Confidence 9999999999976 458999999999999999999999999998764
No 75
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=9.7e-35 Score=267.49 Aligned_cols=277 Identities=18% Similarity=0.217 Sum_probs=212.8
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
.++.+.|++.++++|+++|+++.++.+||+|+.+++.++|+.|.+ .|+++||+|+++++|++++++++|||+++|++++
T Consensus 24 ~~~~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v 103 (562)
T PRK05677 24 PNIQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVV 103 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence 589999999999999999999999999999999999999999997 6999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCC-----------------ccc
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPV-----------------STV 155 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------------~~~ 155 (301)
|++|..+.+++.++++.++++++|++........+..... ..+.++..+...... ...
T Consensus 104 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (562)
T PRK05677 104 NTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKT-----GVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPA 178 (562)
T ss_pred ecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhcc-----CcceeEEecccccccchhhhhcccchhhccccccc
Confidence 9999999999999999999999999877655444433211 233333322110000 000
Q ss_pred ccCCCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh--CC-CCCEEEEec
Q 046637 156 ASSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE--MG-LMPTYLWCV 231 (301)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~-~~~~~l~~~ 231 (301)
........+.+.+...... .......++++++|+|||||||.||||.++|.++..+.......+. +. ..+++++.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (562)
T PRK05677 179 YHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPL 258 (562)
T ss_pred cCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcC
Confidence 0001123344443322221 1122346789999999999999999999999999877665544443 33 346889999
Q ss_pred cchhhhhhHH-HHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccc
Q 046637 232 PMFHCNGWCL-TWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENR 295 (301)
Q Consensus 232 p~~h~~g~~~-~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 295 (301)
|++|.+|+.. ++..+..|++.++.+ .+++..+++.++++++|+++.+|+++..+++.......+
T Consensus 259 pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 324 (562)
T PRK05677 259 PLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLD 324 (562)
T ss_pred cHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCC
Confidence 9999999874 566777888777665 568999999999999999999999999998765444333
No 76
>PRK12467 peptide synthase; Provisional
Probab=100.00 E-value=8.9e-36 Score=318.12 Aligned_cols=260 Identities=18% Similarity=0.177 Sum_probs=220.2
Q ss_pred cccccCCCCC-CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Q 046637 3 GMIRCSANYV-PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELH 81 (301)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 81 (301)
.+|....+++ ..++.++|++.++++||++|+++.++++||+||.++++++|+.|.+.|+++|++|+++++|++++++++
T Consensus 3083 ~~~~~~~~~~~~~~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~ 3162 (3956)
T PRK12467 3083 AWNATAAAYPSERLVHQLIEAQVARTPEAPALVFGDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVAL 3162 (3956)
T ss_pred hhccCCCCCCccccHHHHHHHHHHhCCCcceEeeCCcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHH
Confidence 3555544444 479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 82 FGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 82 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
|||+++|++++|++|.++.+++.++++++++++++++......+... ....++.++....
T Consensus 3163 lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~---------~~~~~~~~~~~~~----------- 3222 (3956)
T PRK12467 3163 LAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP---------AGDTALTLDRLDL----------- 3222 (3956)
T ss_pred HHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc---------cCCceeeecchhh-----------
Confidence 99999999999999999999999999999999999987653322110 1112222222110
Q ss_pred ccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH
Q 046637 162 LEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL 241 (301)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~ 241 (301)
.............++++++|+|||||||+||||+++|+++.+.+......+++.++|++++..|++|..+...
T Consensus 3223 -------~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~ 3295 (3956)
T PRK12467 3223 -------NGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQER 3295 (3956)
T ss_pred -------cccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHH
Confidence 0000111222356789999999999999999999999999999998888899999999999999999999888
Q ss_pred HHHHHHhCCeEEeeCC--CCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 242 TWAVAAQGGTNVCQRT--VNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 242 ~~~~l~~g~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
++.++..|+++++.++ +++..+++.|+++++|++.++|++++.+++..
T Consensus 3296 ~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~ 3345 (3956)
T PRK12467 3296 FLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA 3345 (3956)
T ss_pred HHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc
Confidence 9999999999999875 78999999999999999999999999998753
No 77
>PLN02574 4-coumarate--CoA ligase-like
Probab=100.00 E-value=5.1e-35 Score=269.16 Aligned_cols=270 Identities=23% Similarity=0.298 Sum_probs=207.0
Q ss_pred CCHHHHHHHHhhhcCCccEEEECC--eeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGD--VQYTWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~--~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.++.+.+... +.+|+++|+++.+ ..+||+||.+++.++|++|.+ .|+++||+|+++++|++++++++|||+++|++
T Consensus 40 ~~~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v 118 (560)
T PLN02574 40 LDAVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGI 118 (560)
T ss_pred CCHHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeE
Confidence 4444444333 6799999999864 379999999999999999999 99999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhh
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAI 170 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (301)
++|++|..+.+++.++++.+++++++++......+.. . ..+ ++.++...... ........+.++...
T Consensus 119 ~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~----~-----~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~ 185 (560)
T PLN02574 119 VTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSP----L-----GVP-VIGVPENYDFD---SKRIEFPKFYELIKE 185 (560)
T ss_pred EeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHh----c-----CCc-EEecCcccccc---cCccCcccHHHHhhc
Confidence 9999999999999999999999999998765443321 1 122 22222111000 001122345555443
Q ss_pred ccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH----HhhC-CCCCEEEEeccchhhhhhHH-HHH
Q 046637 171 GKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL----FNEM-GLMPTYLWCVPMFHCNGWCL-TWA 244 (301)
Q Consensus 171 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~-~~~~~~l~~~p~~h~~g~~~-~~~ 244 (301)
...........++++++|+|||||||.||||++||.++..+...... .... ..+++++..+|++|.+|+.. ++.
T Consensus 186 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~ 265 (560)
T PLN02574 186 DFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVG 265 (560)
T ss_pred CCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHH
Confidence 32222223356789999999999999999999999999887665432 1222 35688999999999999875 566
Q ss_pred HHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCC-cccccc
Q 046637 245 VAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV-FENRFR 297 (301)
Q Consensus 245 ~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~~~~l~ 297 (301)
++..|+++++.+.+++..+++.++++++|++.++|+++..|++.+.. ...+++
T Consensus 266 ~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 319 (560)
T PLN02574 266 LLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLK 319 (560)
T ss_pred HHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccc
Confidence 77889999999999999999999999999999999999999987543 333443
No 78
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=5.3e-35 Score=272.62 Aligned_cols=254 Identities=21% Similarity=0.206 Sum_probs=204.7
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEECC---------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYGD---------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
...++.++|++.++++|+++|+++.+ +.+||+||.+++.++|++|.+. +++||+|+++++|++++++++|
T Consensus 19 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~l 97 (631)
T PRK07769 19 PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFF 97 (631)
T ss_pred ccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHH
Confidence 34689999999999999999998732 5799999999999999999987 8999999999999999999999
Q ss_pred Hhhhccceeeec-CCCCC--HHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCC
Q 046637 83 GVPMAGAVLCTL-NTRHD--SAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSS 159 (301)
Q Consensus 83 A~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 159 (301)
||+++|++++|+ ++..+ .+++.+++++++++++|+++.....+.+.....+.. ....++.++.....
T Consensus 98 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------- 167 (631)
T PRK07769 98 GALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAK--ERPRVIAVDAVPDE-------- 167 (631)
T ss_pred HHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhcccc--ccceEEEccccccc--------
Confidence 999999999999 45554 688999999999999999877655544433322210 12334443321100
Q ss_pred CCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhh
Q 046637 160 GNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGW 239 (301)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~ 239 (301)
. . .........++++++|+|||||||.||||++||.++..+.......+++..++++++.+|++|.+|+
T Consensus 168 --~------~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl 236 (631)
T PRK07769 168 --V------G---ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGL 236 (631)
T ss_pred --c------c---cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhh
Confidence 0 0 0001113457899999999999999999999999999888877777888899999999999999999
Q ss_pred HHHHHHHHhCCeEEeeC--CC--CHHHHHHHHHhcCc---ceecCChHHHHHHHc
Q 046637 240 CLTWAVAAQGGTNVCQR--TV--NAKEIFDNITRHKV---THFGGAPTVLNMIAN 287 (301)
Q Consensus 240 ~~~~~~l~~g~~~v~~~--~~--~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~ 287 (301)
...+.+++.|+++++.+ .+ ++..+++.+.++++ +.+..+|+++..+++
T Consensus 237 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~ 291 (631)
T PRK07769 237 ITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAA 291 (631)
T ss_pred HHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHH
Confidence 87777888899998875 34 89999999999986 789999999887765
No 79
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=100.00 E-value=3.2e-34 Score=263.03 Aligned_cols=280 Identities=21% Similarity=0.248 Sum_probs=214.4
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
..++.++|++.++.+|+++|+++.++.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|++++
T Consensus 20 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v 99 (541)
T TIGR03205 20 RGTLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVV 99 (541)
T ss_pred CCCHHHHHHHHHHHcCCCceEEECCcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEE
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCc-----ccccCCCCccHHHH
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVS-----TVASSSGNLEYESL 167 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~ 167 (301)
|++|..+.+++.++++.++++++++++.. .......+..... .+..+++.+....... ..........++++
T Consensus 100 ~l~~~~~~~~l~~~i~~~~~~~vi~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (541)
T TIGR03205 100 HLSPLDGERALSHKLSDSGARLLITSDLA-ALLPMALKFLEKG--LLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADF 176 (541)
T ss_pred ecCCCCCHHHHHHHHhhcCceEEEEeCch-hhhHHHHHhhhcc--cceEEEEecccccccccccccccCCCcccccHHHH
Confidence 99999999999999999999999998642 1111111111100 2334444433211000 00011123456666
Q ss_pred HhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh------hCCCCCEEEEeccchhhhhhHH
Q 046637 168 LAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN------EMGLMPTYLWCVPMFHCNGWCL 241 (301)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~------~~~~~~~~l~~~p~~h~~g~~~ 241 (301)
..............++++++++|||||||.||||+++|.++....... ..+ .....+++++..|++|.+|+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~ 255 (541)
T TIGR03205 177 VKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIYALTV 255 (541)
T ss_pred HhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHHHHHH
Confidence 543322222234567899999999999999999999999987644321 111 2234478999999999999775
Q ss_pred -HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccc
Q 046637 242 -TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRF 296 (301)
Q Consensus 242 -~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 296 (301)
++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|++.+.....++
T Consensus 256 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 311 (541)
T TIGR03205 256 ILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDL 311 (541)
T ss_pred HHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCc
Confidence 6778889999988888899999999999999999999999999987654443443
No 80
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=100.00 E-value=2.7e-35 Score=277.88 Aligned_cols=261 Identities=16% Similarity=0.211 Sum_probs=206.0
Q ss_pred CCCCHHHHHHHHhhhcCC-ccEEEECC-eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 12 VPLTPISFLERSAVVYRD-RPSVVYGD-VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~-~~al~~~~-~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
+..++.+.|.+.++++|+ ++|+.+.+ +.+||+|+.++++++|+.|.+. +++||+|+++++|++++++++|||+++|+
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~ 280 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRR 280 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCC
Confidence 357899999999999998 58887643 7899999999999999999987 59999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHH--HHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHH
Q 046637 90 VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQ--GAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESL 167 (301)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (301)
+++|+++.++.+++.+++++++++++|++.+..+... ....... ... ++.+++.... ..+.+.
T Consensus 281 v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~----~~~-~i~~~~~~~~----------~~~~~~ 345 (718)
T PRK08043 281 IPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLT----QVR-WVYLEDLKDD----------VTTADK 345 (718)
T ss_pred cccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhc----ccc-EEEhhhhhhh----------cchhHH
Confidence 9999999999999999999999999999866543210 0111111 122 2222221100 011110
Q ss_pred ----HhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-H
Q 046637 168 ----LAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-T 242 (301)
Q Consensus 168 ----~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~ 242 (301)
..............++++++|+|||||||.||||++||.++..+.......+++..+|++++.+|++|.+|+.. +
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~ 425 (718)
T PRK08043 346 LWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGL 425 (718)
T ss_pred HHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHH
Confidence 00000111112346789999999999999999999999999988877777778899999999999999999865 6
Q ss_pred HHHHHhCCeEEeeCC-CCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 243 WAVAAQGGTNVCQRT-VNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 243 ~~~l~~g~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+.++..|+++++.+. +++..+++.++++++|+++.+|+++..+.+.
T Consensus 426 ~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~ 472 (718)
T PRK08043 426 FTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARF 472 (718)
T ss_pred HHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhh
Confidence 788999999998874 5778899999999999999999999988764
No 81
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=100.00 E-value=3.3e-34 Score=261.00 Aligned_cols=262 Identities=23% Similarity=0.285 Sum_probs=214.6
Q ss_pred HHHHHHHH-hhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeec
Q 046637 16 PISFLERS-AVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL 94 (301)
Q Consensus 16 ~~~~l~~~-~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (301)
-.+++.++ ++.+||++|+++.++.+||.|+.+.++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|+
T Consensus 6 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l 85 (508)
T TIGR02262 6 AEDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVAL 85 (508)
T ss_pred HHHHHHHHHhcccCCceEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeec
Confidence 34667665 67799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcccc
Q 046637 95 NTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR 174 (301)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (301)
++..+.+++.++++.+++++++++......+.+.....+ ..+.++..+.... ....+.+........
T Consensus 86 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 152 (508)
T TIGR02262 86 NTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSP----HLEHRVVVGRPEA---------GEVQLAELLATESEQ 152 (508)
T ss_pred cCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCC----CccEEEEeCCCCc---------ccccHHHHhhcCCCc
Confidence 999999999999999999999999877666555444333 4455555443211 112344433322222
Q ss_pred ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHH-HHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCCeE
Q 046637 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLA-AALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGTN 252 (301)
Q Consensus 175 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~ 252 (301)
.......++++++|+|||||||.||||.++|.++...... ....+++..+|+++...|++|.+++.. ++.++..|+++
T Consensus 153 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~ 232 (508)
T TIGR02262 153 FKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATT 232 (508)
T ss_pred cCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceE
Confidence 2223355789999999999999999999999999877665 445667889999999999999999864 66778899999
Q ss_pred EeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 253 VCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 253 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
++.+ .+++..+++.++++++|++.++|.++..+++...
T Consensus 233 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~ 271 (508)
T TIGR02262 233 VLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPN 271 (508)
T ss_pred EEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcc
Confidence 8876 4689999999999999999999999999887654
No 82
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=4.5e-34 Score=262.92 Aligned_cols=280 Identities=22% Similarity=0.216 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
+.++.++|.+.++++|+++|+++.++.+||+||.+.+.++|..|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 22 ~~~i~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 101 (557)
T PRK07059 22 YPSLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVV 101 (557)
T ss_pred CCCHHHHHHHHHHHcCCCceEEEcCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCC----------------cccc
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPV----------------STVA 156 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~~~~ 156 (301)
|++|..+.+++.++++.++++++++++.......+..... ..+.++......... ....
T Consensus 102 ~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (557)
T PRK07059 102 NVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKT-----AVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAW 176 (557)
T ss_pred ccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhccc-----CCceeEEeccccccccccccccccccccccccccc
Confidence 9999999999999999999999999877655444433221 233333322110000 0000
Q ss_pred cCCCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh----CC---CCCEEE
Q 046637 157 SSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE----MG---LMPTYL 228 (301)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~~---~~~~~l 228 (301)
...+...+++........ .......++++++|+|||||||.||+|+++|.+++.+.......+. .. .+..++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (557)
T PRK07059 177 SLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFV 256 (557)
T ss_pred CCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEE
Confidence 112234455554433222 1223456789999999999999999999999999876554332221 11 235678
Q ss_pred EeccchhhhhhH-HHHHHHHhCCeEEeeCC-CCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 229 WCVPMFHCNGWC-LTWAVAAQGGTNVCQRT-VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 229 ~~~p~~h~~g~~-~~~~~l~~g~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
+..|++|.+++. ..+.++..|++.++.+. .++..+++.++++++|.+..+|++++.+++.......+++
T Consensus 257 ~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~ 327 (557)
T PRK07059 257 CALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFS 327 (557)
T ss_pred EeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCch
Confidence 899999999876 46677888888777764 5799999999999999999999999999987765555543
No 83
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=100.00 E-value=8.7e-35 Score=292.19 Aligned_cols=272 Identities=17% Similarity=0.087 Sum_probs=209.5
Q ss_pred CCCHHHHHHHHhhhcCCccEEEE---------CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Q 046637 13 PLTPISFLERSAVVYRDRPSVVY---------GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFG 83 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 83 (301)
..++.++|++.++++||++|+++ .++++||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++|
T Consensus 235 ~~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA 314 (1389)
T TIGR03443 235 RGAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMG 314 (1389)
T ss_pred cCcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHH
Confidence 35799999999999999999986 347899999999999999999999999999999999999999999999
Q ss_pred hhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch---hhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCC
Q 046637 84 VPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL---PIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSG 160 (301)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 160 (301)
|+++|++++|++|..+.+++.++++.+++++++++.... ..+.............++.+...+...... ... .
T Consensus 315 ~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~- 390 (1389)
T TIGR03443 315 VLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVG--GSL-E- 390 (1389)
T ss_pred HHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccccc--ccc-c-
Confidence 999999999999999999999999999999999876421 111111111000000122222211100000 000 0
Q ss_pred CccHHHHHhhc---cccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhh
Q 046637 161 NLEYESLLAIG---KLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCN 237 (301)
Q Consensus 161 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~ 237 (301)
....+..... ..........++++++|+|||||||.||||+++|.++..++......+++.++|+++...|++|..
T Consensus 391 -~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 469 (1389)
T TIGR03443 391 -GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDP 469 (1389)
T ss_pred -cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecc
Confidence 0000000000 001111234578999999999999999999999999999888888888899999999999999999
Q ss_pred hhHHHHHHHHhCCeEEeeCC---CCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 238 GWCLTWAVAAQGGTNVCQRT---VNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 238 g~~~~~~~l~~g~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
++..++.+++.|+++++.+. .++..+++.++++++|+++++|++++.|....
T Consensus 470 ~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~ 524 (1389)
T TIGR03443 470 IQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA 524 (1389)
T ss_pred hHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc
Confidence 88888999999999998864 36889999999999999999999999997543
No 84
>PRK05852 acyl-CoA synthetase; Validated
Probab=100.00 E-value=2.2e-34 Score=263.68 Aligned_cols=266 Identities=19% Similarity=0.208 Sum_probs=207.7
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGD--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
..++.++|++.++++||++|+++.+ +.+||+||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 15 ~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 94 (534)
T PRK05852 15 GPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLV 94 (534)
T ss_pred cccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcE
Confidence 5679999999999999999999854 47999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc--cHHHHH
Q 046637 91 LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL--EYESLL 168 (301)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~ 168 (301)
+++++|.++.+++.++++.++++++|++............ . ..+..+.+...... ..+.. .+....
T Consensus 95 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 162 (534)
T PRK05852 95 VVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT--R----WWPLTVNVGGDSGP------SGGTLSVHLDAAT 162 (534)
T ss_pred EeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc--c----ccceeeeecccccc------ccccccccccccc
Confidence 9999999999999999999999999998643321110000 0 11111221111000 00000 000000
Q ss_pred hhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHH
Q 046637 169 AIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAA 247 (301)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~ 247 (301)
... ..........++.++|+|||||||.||||.++|.++..++......+.+..+|++++..|++|.+|+.. ++.++.
T Consensus 163 ~~~-~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 241 (534)
T PRK05852 163 EPT-PATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLA 241 (534)
T ss_pred CCC-ccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHh
Confidence 000 000111122467899999999999999999999999988888888888999999999999999999875 677788
Q ss_pred hCCeEEeeC--CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCC
Q 046637 248 QGGTNVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291 (301)
Q Consensus 248 ~g~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 291 (301)
.|+++++.+ .+++..+++.++++++|+++++|++++.|.+.+..
T Consensus 242 ~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 287 (534)
T PRK05852 242 SGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAAT 287 (534)
T ss_pred cCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccc
Confidence 888888754 57899999999999999999999999999886543
No 85
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=100.00 E-value=8.1e-35 Score=264.66 Aligned_cols=256 Identities=16% Similarity=0.181 Sum_probs=213.4
Q ss_pred CHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeec
Q 046637 15 TPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL 94 (301)
Q Consensus 15 ~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (301)
++.+.|++.++.+|+++|+.+.++.+||+||.+++.++|..|.+.|+++|++|+++++|+.++++++|||+++|++++|+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~ 80 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV 80 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcccc
Q 046637 95 NTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR 174 (301)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (301)
++.++.+++.++++..+++.++++........ ..+ ++.++.. .+........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~~~-~~~~~~~----------------~~~~~~~~~~ 132 (502)
T TIGR01734 81 DTSIPSERIEMIIEAAGPELVIHTAELSIDAV-----------GTQ-IITLSAL----------------EQAETSGGPV 132 (502)
T ss_pred CCcChHHHHHHHHHhcCCCEEEeccccccccc-----------CCc-eEEchHh----------------hhhhhhcCCc
Confidence 99999999999999999999999876432210 111 2221110 1111111111
Q ss_pred ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEe
Q 046637 175 EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVC 254 (301)
Q Consensus 175 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~ 254 (301)
.......++++++|+|||||||.||+|.++|.++..+.......+....++++++..|++|..++..++.++..|+++++
T Consensus 133 ~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~ 212 (502)
T TIGR01734 133 SFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHC 212 (502)
T ss_pred cccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEE
Confidence 11223567889999999999999999999999999888877777888899999999999999998888999999999998
Q ss_pred eCC---CCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 255 QRT---VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 255 ~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
.+. .++..+++.++++++|.+.++|.++..++........++++
T Consensus 213 ~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~ 259 (502)
T TIGR01734 213 LDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPH 259 (502)
T ss_pred cCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCc
Confidence 874 58899999999999999999999999887765544444443
No 86
>PRK12467 peptide synthase; Provisional
Probab=100.00 E-value=8.8e-35 Score=310.53 Aligned_cols=263 Identities=20% Similarity=0.196 Sum_probs=221.7
Q ss_pred cccccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 3 GMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
.+|....+....++.++|++.++++||++|+++.++++||+||.++++++|+.|.+.|+++|++|+++++|+++++++++
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~l 580 (3956)
T PRK12467 501 RWNAPATEYAPDCVHQLIEAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLL 580 (3956)
T ss_pred hcCCCCCCCCCCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 45666666677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
||+++|++++|++|.++.+++.++++++++++++++........ ... ... ++.++....
T Consensus 581 ail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~----~~~-~~~~~~~~~------------ 639 (3956)
T PRK12467 581 AVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLP----VPA----GLR-SLCLDEPAD------------ 639 (3956)
T ss_pred HHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhcc----ccc----Ccc-EEEeccccc------------
Confidence 99999999999999999999999999999999999874332110 000 112 222222110
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
...............++++++|+|||||||.||||+++|.++.+.+......+++.+++++++..|++|..++..+
T Consensus 640 ----~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~ 715 (3956)
T PRK12467 640 ----LLCGYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTEL 715 (3956)
T ss_pred ----cccccCCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHHHH
Confidence 0000011111223567899999999999999999999999999999888888999999999999999999998889
Q ss_pred HHHHHhCCeEEeeC---CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 243 WAVAAQGGTNVCQR---TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 243 ~~~l~~g~~~v~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+.+++.|+++++.+ .+++..+++.|+++++|++.++|++++.|++...
T Consensus 716 ~~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~ 766 (3956)
T PRK12467 716 FGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASR 766 (3956)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhc
Confidence 99999999999987 3689999999999999999999999999987543
No 87
>PRK13383 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=3.2e-34 Score=261.58 Aligned_cols=249 Identities=22% Similarity=0.284 Sum_probs=204.8
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
.+.++.+.|.+.++++||++|+.++++.+||+|+.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~ 112 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV 112 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeCCCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+|+++.++.+++.++++.++++.+++++...+.+... ...++.++... .... ..
T Consensus 113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----------~~~~~~~~~~~------------~~~~----~~ 166 (516)
T PRK13383 113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGA----------DDAVAVIDPAT------------AGAE----ES 166 (516)
T ss_pred EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhh----------hcceEEeccch------------hhhh----cC
Confidence 9999999999999999999999999987655433221 11222322110 0000 00
Q ss_pred cccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHH--HHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhC
Q 046637 172 KLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAY--LNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQG 249 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~--~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g 249 (301)
.. .....++.++|+|||||||.||||.++|.... .........+.+..+++++...|++|.+|+...+.++..|
T Consensus 167 ~~----~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G 242 (516)
T PRK13383 167 GG----RPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALG 242 (516)
T ss_pred CC----CCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcC
Confidence 00 01223566799999999999999999997432 1122233455678899999999999999998888889999
Q ss_pred CeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 250 GTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 250 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+++++.+.+++..+++.++++++|.+.++|+++..+.+...
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 283 (516)
T PRK13383 243 GTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPP 283 (516)
T ss_pred CEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccc
Confidence 99999888999999999999999999999999999987643
No 88
>PRK07868 acyl-CoA synthetase; Validated
Probab=100.00 E-value=2.6e-34 Score=278.06 Aligned_cols=279 Identities=12% Similarity=0.107 Sum_probs=207.8
Q ss_pred ccccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Q 046637 4 MIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 83 (301)
++.... ....++.++|++.++++||++|+++.++.+||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++|
T Consensus 438 ~~~~~~-~~~~sl~~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA 516 (994)
T PRK07868 438 LGQIND-HTRISLGRIIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAA 516 (994)
T ss_pred hhhcCC-CCCccHHHHHHHHHHHCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 344443 6778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCcc
Q 046637 84 VPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLE 163 (301)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 163 (301)
|+++|++++|++|. +++.++++.++++++|++.+....+.+ ....+++++.................
T Consensus 517 ~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~----------~~~~iiv~~~~~~~~~~~~~~~~~~~ 583 (994)
T PRK07868 517 LSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQ----------LPGRVLVLGGGESRDLDLPDDADVID 583 (994)
T ss_pred HHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHh----------cCceEEEecCCccccccCCcchhhhh
Confidence 99999999999985 689999999999999998765443221 11344444421110000000000011
Q ss_pred HHHHHhhccccc---cCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH
Q 046637 164 YESLLAIGKLRE---VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 164 ~~~~~~~~~~~~---~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~ 240 (301)
+++........+ ......++++++|+|| ||||.||++.++|.++..........+.+..+|++++..|++|.+|+.
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~ 662 (994)
T PRK07868 584 MEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLL 662 (994)
T ss_pred hhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHH
Confidence 111111100000 0011236889999998 688888888888877655544455566788999999999999999988
Q ss_pred HHHHH-HHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 241 LTWAV-AAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 241 ~~~~~-l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
..+.+ +..|+++++.+++++..+++.|+++++|+++++|++++.|++.+.....+++
T Consensus 663 ~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~ 720 (994)
T PRK07868 663 VSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNH 720 (994)
T ss_pred HHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCC
Confidence 65554 5455556666789999999999999999999999999999987654444443
No 89
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=7.7e-34 Score=261.69 Aligned_cols=279 Identities=24% Similarity=0.281 Sum_probs=210.2
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
.+++.++|.+.++.+|+++|+++.++.+||+||.+++.++|..|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 23 ~~~~~~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 102 (563)
T PRK06710 23 IQPLHKYVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVV 102 (563)
T ss_pred cccHHHHHHHHHHHCCCceEEEecCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCccc-----------------
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTV----------------- 155 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------- 155 (301)
|++|..+.+++.++++.++++++++++............. ..+.+++.........+.
T Consensus 103 pi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (563)
T PRK06710 103 QTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSAT-----KIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVK 177 (563)
T ss_pred ccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhh-----ccceeEEeccccccccccccccchhhccccccccc
Confidence 9999999999999999999999999876554433322111 122322211100000000
Q ss_pred -ccCCCCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH-HhhCC-CCCEEEEecc
Q 046637 156 -ASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL-FNEMG-LMPTYLWCVP 232 (301)
Q Consensus 156 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~-~~~~~l~~~p 232 (301)
........|..+...............+++++++|||||||.||+|.++|.++..+...... .+... .++++++..|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p 257 (563)
T PRK06710 178 VSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLP 257 (563)
T ss_pred ccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCc
Confidence 00000011222111111110111133578999999999999999999999999765443322 22333 4468899999
Q ss_pred chhhhhhHH-HHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccc
Q 046637 233 MFHCNGWCL-TWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRF 296 (301)
Q Consensus 233 ~~h~~g~~~-~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 296 (301)
++|.+|+.. ++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.+.....++
T Consensus 258 ~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 322 (563)
T PRK06710 258 FFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDI 322 (563)
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCCh
Confidence 999999765 5668889999999988999999999999999999999999999998765444443
No 90
>PRK05691 peptide synthase; Validated
Probab=100.00 E-value=1.1e-34 Score=311.86 Aligned_cols=265 Identities=16% Similarity=0.162 Sum_probs=221.8
Q ss_pred ccccCCCCC-CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 4 MIRCSANYV-PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 4 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
+|....+++ ..++.++|++.++++||++|+++.++.+||+||.+.++++|+.|.+.|+++|++|+|+++++++++++++
T Consensus 3709 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~l 3788 (4334)
T PRK05691 3709 CNRSERDYPLEQSYVRLFEAQVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIV 3788 (4334)
T ss_pred hCCccCCCccccCHHHHHHHHHHhCCCceEEEcCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 444444444 5699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
|++++|++++||+|..+.+++.++++++++++++++................. ..+.+++.++...
T Consensus 3789 avlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------------ 3854 (4334)
T PRK05691 3789 GSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCA--NRPRLLVWEEVQA------------ 3854 (4334)
T ss_pred HHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccc--cccceeeeccccc------------
Confidence 99999999999999999999999999999999999987665444433322211 1122222221110
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
.............+++.++|+|||||||+||||+++|.++.+.+......+++.++++++...|+++..++..+
T Consensus 3855 ------~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~ 3928 (4334)
T PRK05691 3855 ------GEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQF 3928 (4334)
T ss_pred ------ccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHH
Confidence 00000111223567899999999999999999999999999999988888999999999999999999998889
Q ss_pred HHHHHhCCeEEeeCC---CCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 243 WAVAAQGGTNVCQRT---VNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 243 ~~~l~~g~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+.++..|+++++.+. .++..+++.++++++|++.++|++++.+++.
T Consensus 3929 ~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~ 3977 (4334)
T PRK05691 3929 LAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAE 3977 (4334)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhh
Confidence 999999999999863 5799999999999999999999999999864
No 91
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=100.00 E-value=2.3e-34 Score=267.29 Aligned_cols=255 Identities=22% Similarity=0.263 Sum_probs=202.3
Q ss_pred CCCCHHHHHHHHhhhcCCccEEEECC---------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 12 VPLTPISFLERSAVVYRDRPSVVYGD---------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~al~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
..+++.+++++.++++|+++|+++.+ +.+||+||.+++.++|.+|.+. +++||+|+++++|++++++++|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~l 110 (612)
T PRK12476 32 PGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFF 110 (612)
T ss_pred ccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHH
Confidence 35789999999999999999998732 4899999999999999999987 9999999999999999999999
Q ss_pred Hhhhccceeeec-CCCCC--HHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCC
Q 046637 83 GVPMAGAVLCTL-NTRHD--SAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSS 159 (301)
Q Consensus 83 A~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 159 (301)
||+++|++++|+ ++..+ .+++.+++++++++++|++......+.+........ ....++.++....
T Consensus 111 A~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~--------- 179 (612)
T PRK12476 111 AAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRL--RRPRVIAIDAIPD--------- 179 (612)
T ss_pred HHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccc--cCceEEEeccccc---------
Confidence 999999999999 57766 789999999999999999876655444433322100 1234444432210
Q ss_pred CCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh-CCCCCEEEEeccchhhhh
Q 046637 160 GNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE-MGLMPTYLWCVPMFHCNG 238 (301)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~l~~~p~~h~~g 238 (301)
............++++++|+|||||||.||||++||.++..++......++ +.+++++++.+|++|.+|
T Consensus 180 ----------~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g 249 (612)
T PRK12476 180 ----------SAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMG 249 (612)
T ss_pred ----------cccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccc
Confidence 000000111245689999999999999999999999999887777666677 788899999999999999
Q ss_pred hHHHHHHHHhCCeEEeeCC--C--CHHHHHHHHH--hcCcceecCChHHHHHHHcC
Q 046637 239 WCLTWAVAAQGGTNVCQRT--V--NAKEIFDNIT--RHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 239 ~~~~~~~l~~g~~~v~~~~--~--~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~ 288 (301)
+...+.+++.|+++++... + +|..+++.++ ++++|.++.+|+++..++..
T Consensus 250 ~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~ 305 (612)
T PRK12476 250 LSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQ 305 (612)
T ss_pred hHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHH
Confidence 8876666667777766642 3 8999999995 58999999999998888764
No 92
>PRK12316 peptide synthase; Provisional
Probab=100.00 E-value=1.2e-34 Score=313.94 Aligned_cols=262 Identities=16% Similarity=0.147 Sum_probs=219.9
Q ss_pred ccccCCCCC-CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 4 MIRCSANYV-PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 4 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
++.....++ ..++.++|++.++++||++|+++.++.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~~~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~l 579 (5163)
T PRK12316 500 WNATAAEYPLQRGVHRLFEEQVERTPEAPALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALL 579 (5163)
T ss_pred hcCccccCCCCCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 344444444 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
||+++|++++|++|.++.+++.++++++++++++++......... . ....++.++....
T Consensus 580 a~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~----~-----~~~~~~~~~~~~~------------ 638 (5163)
T PRK12316 580 AILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL----A-----AGVQVLDLDRPAA------------ 638 (5163)
T ss_pred HHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc----c-----cCceEEEecCcch------------
Confidence 999999999999999999999999999999999998654332110 0 1112233322110
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
+ ..............++++++|+|||||||.||||+++|.++.+.+......+++..++++++..|++|..|+..+
T Consensus 639 -~---~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~ 714 (5163)
T PRK12316 639 -W---LEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEF 714 (5163)
T ss_pred -h---hccCCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHH
Confidence 0 011111112223567899999999999999999999999999999988888999999999999999999998889
Q ss_pred HHHHHhCCeEEeeC---CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 243 WAVAAQGGTNVCQR---TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 243 ~~~l~~g~~~v~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+.++..|+++++.+ .+++..+++.++++++|++.++|++++.|++.+.
T Consensus 715 ~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~ 765 (5163)
T PRK12316 715 FWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED 765 (5163)
T ss_pred HHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc
Confidence 99999999999985 4789999999999999999999999999987543
No 93
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=100.00 E-value=1.1e-33 Score=260.55 Aligned_cols=281 Identities=21% Similarity=0.231 Sum_probs=215.1
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLA-HLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
..++.++|.+.++++|+++|+++.++.+||+||.+++.++|..|. +.|+++|++|+++++|++++++++|||+++|+++
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 103 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTV 103 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEECCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 467899999999999999999999999999999999999999997 6899999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCC-----------------CCcc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGE-----------------PVST 154 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------------~~~~ 154 (301)
+|++|.++.+++.++++.++++++++++.....+.+..... ....++..+.... ....
T Consensus 104 v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (560)
T PRK08751 104 VNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT-----PVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVP 178 (560)
T ss_pred eccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC-----CccEEEEechhhhcccccchhhhhhhhhhhcccc
Confidence 99999999999999999999999999887665544433221 1222332210000 0000
Q ss_pred cccCCCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh----CCC-CCEEE
Q 046637 155 VASSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE----MGL-MPTYL 228 (301)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~~~-~~~~l 228 (301)
.....+...+.+........ .......++++++++|||||||.||||.+||.++..+.......+. +.. +++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (560)
T PRK08751 179 EYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVI 258 (560)
T ss_pred ccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEE
Confidence 00111223344443322211 1122356789999999999999999999999999887766554443 233 35778
Q ss_pred EeccchhhhhhHH-HHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 229 WCVPMFHCNGWCL-TWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 229 ~~~p~~h~~g~~~-~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
+..|++|.+|+.. .+.++..|++.++.. .+++..+++.++++++|++..+|.++..+.+.+...+.++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~ 330 (560)
T PRK08751 259 TALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSS 330 (560)
T ss_pred EecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhh
Confidence 8899999999764 566677787776654 578999999999999999999999999999877665555544
No 94
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=100.00 E-value=1.8e-33 Score=259.02 Aligned_cols=280 Identities=18% Similarity=0.221 Sum_probs=212.7
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHL-GISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
++++.+.|.+.++++|+++|+.+.++.+||.||.++++++|..|.+. |+++||+|+++++|++++++++|||+++|+++
T Consensus 23 ~~~~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~ 102 (562)
T PRK12492 23 YKSVVEVFERSCKKFADRPAFSNLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIV 102 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEecCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 35899999999999999999999899999999999999999999985 99999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCC--------------CC---CCcc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPEC--------------GE---PVST 154 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~---~~~~ 154 (301)
+++++..+.+++.++++.++++++++++............. ....++..... .. ...+
T Consensus 103 v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (562)
T PRK12492 103 VNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT-----GIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVP 177 (562)
T ss_pred eccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc-----CceEEEeechhhccccccchhccccccccccccc
Confidence 99999999999999999999999999876544433322210 11111110000 00 0000
Q ss_pred cccCCCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh---------CCC-
Q 046637 155 VASSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE---------MGL- 223 (301)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---------~~~- 223 (301)
.........|++........ ........+++++|+|||||||.||||+++|.++..+.......+. +..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (562)
T PRK12492 178 AYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEG 257 (562)
T ss_pred ccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCC
Confidence 00011224455554433221 1122356689999999999999999999999999877666554443 222
Q ss_pred CCEEEEeccchhhhhhHH-HHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 224 MPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 224 ~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
++++++.+|++|.+|+.. .+..+..|++.++.. .+++..+++.++++++|++..+|+++..|++.+.....+++
T Consensus 258 ~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~ 333 (562)
T PRK12492 258 QEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFS 333 (562)
T ss_pred CeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCccccccc
Confidence 357789999999999765 556677888777664 46899999999999999999999999999988765555544
No 95
>PRK12316 peptide synthase; Provisional
Probab=100.00 E-value=1.6e-34 Score=312.83 Aligned_cols=261 Identities=20% Similarity=0.185 Sum_probs=218.6
Q ss_pred ccccCCCCCC-CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 4 MIRCSANYVP-LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 4 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
++....+++. .++.++|++.++++|+++|+++.++.+||+||.+++.++|+.|.+.|+++|++|+++++|++++++++|
T Consensus 1992 ~~~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~l 2071 (5163)
T PRK12316 1992 WDRTPEAYPRGPGVHQRIAEQAARAPEAIAVVFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALL 2071 (5163)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEcCCCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4555555553 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
||+++|++++|++|.++.+++.++++++++++++++......... .. ... .+.++...
T Consensus 2072 Ail~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~----~~~-~~~~~~~~------------- 2129 (5163)
T PRK12316 2072 AVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPL----PA----GVA-RLPLDRDA------------- 2129 (5163)
T ss_pred HHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhccc----cc----ccc-eEeccchh-------------
Confidence 999999999999999999999999999999999998765432210 00 111 11111100
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
.+ .............++++++|+|||||||.||||+++|.++.+.+......+++.++++++...|++|..++..+
T Consensus 2130 ~~----~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~ 2205 (5163)
T PRK12316 2130 EW----ADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQW 2205 (5163)
T ss_pred hh----hccCccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHHHH
Confidence 00 00011111233578999999999999999999999999999999888888999999999999999999888889
Q ss_pred HHHHHhCCeEEeeC--CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 243 WAVAAQGGTNVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 243 ~~~l~~g~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+.++..|+++++.+ .+++..+++.++++++|++.++|++++.|.+...
T Consensus 2206 ~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 2255 (5163)
T PRK12316 2206 FHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAE 2255 (5163)
T ss_pred HHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhh
Confidence 99999999997765 3689999999999999999999999999987643
No 96
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=100.00 E-value=4.9e-34 Score=282.68 Aligned_cols=278 Identities=18% Similarity=0.186 Sum_probs=221.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEEC-CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYG-DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
.....++.+.+++.++++|+++|+++. ++.+||+|+.++++++|+.|.+ ++++||+|+++++|+++++++++||+++|
T Consensus 611 ~~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G 689 (1146)
T PRK08633 611 KEALPPLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAG 689 (1146)
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcC
Confidence 344678999999999999999999974 5799999999999999999987 48999999999999999999999999999
Q ss_pred ceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHH--HHhccccCCCCceEEccCCCCCCcccccCCCCccHHH
Q 046637 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAF--EILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYES 166 (301)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 166 (301)
++++|++|..+.+++.++++++++++++++++..+.+.+.. ...+ ....++..++..... .....+.+
T Consensus 690 ~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~~~ 759 (1146)
T PRK08633 690 KVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELP----ENVKVIYLEDLKAKI------SKVDKLTA 759 (1146)
T ss_pred CEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcc----cCceEEEeehhcccc------chhHHHHH
Confidence 99999999999999999999999999999876554432110 0111 233444444321100 00112222
Q ss_pred HHhhcccc----c--cCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH
Q 046637 167 LLAIGKLR----E--VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 167 ~~~~~~~~----~--~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~ 240 (301)
........ . ......++++++|+|||||||.||||.+||.++..+.......++..++|++++.+|++|.+|+.
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~ 839 (1146)
T PRK08633 760 LLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLT 839 (1146)
T ss_pred HHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHH
Confidence 22111000 0 01345678999999999999999999999999999888888888889999999999999999987
Q ss_pred H-HHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 241 L-TWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 241 ~-~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
. .+.++..|+++++.+ .+++..+++.++++++|++.++|++++.+.+.+...+.++++
T Consensus 840 ~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 899 (1146)
T PRK08633 840 VTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFAS 899 (1146)
T ss_pred HHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCC
Confidence 5 788899999999876 578999999999999999999999999999876665555554
No 97
>PRK06060 acyl-CoA synthetase; Validated
Probab=100.00 E-value=5e-34 Score=269.06 Aligned_cols=244 Identities=20% Similarity=0.199 Sum_probs=200.8
Q ss_pred CCHHHHHHHHhhh--cCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 14 LTPISFLERSAVV--YRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 14 ~~~~~~l~~~~~~--~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
.|+.++|.++++. +||++|+++. +.+||+||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~~-~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~ 82 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYAA-DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMA 82 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEec-CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence 4789999998886 7999999875 489999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIG 171 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
+|++|.++.+++.+++++++++++|++......+.. . .++. ..+.....
T Consensus 83 vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-----------~-~~~~-------------------~~~~~~~~ 131 (705)
T PRK06060 83 FLANPELHRDDHALAARNTEPALVVTSDALRDRFQP-----------S-RVAE-------------------AAELMSEA 131 (705)
T ss_pred EecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcc-----------c-ccch-------------------hhhhhhhc
Confidence 999999999999999999999999998654322110 0 0000 00000000
Q ss_pred c--ccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHH-HHhhCCCCCEEEEeccchhhhhhH-HHHHHHH
Q 046637 172 K--LREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAA-LFNEMGLMPTYLWCVPMFHCNGWC-LTWAVAA 247 (301)
Q Consensus 172 ~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~~~~l~~~p~~h~~g~~-~~~~~l~ 247 (301)
. .........++++++|+|||||||.||||+++|.++..+..... ..+.+..++++++..|++|.+++. .++.++.
T Consensus 132 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~ 211 (705)
T PRK06060 132 ARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLA 211 (705)
T ss_pred cccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHh
Confidence 0 00011124568899999999999999999999999988776553 457788899999999999999875 4778899
Q ss_pred hCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 248 QGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 248 ~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
.|+++++.+ .+++..+++.++++++|+++++|+++..+++..
T Consensus 212 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~ 254 (705)
T PRK06060 212 TGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSC 254 (705)
T ss_pred cCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhc
Confidence 999999886 578999999999999999999999999998754
No 98
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=100.00 E-value=6.5e-34 Score=258.71 Aligned_cols=257 Identities=19% Similarity=0.231 Sum_probs=213.2
Q ss_pred CCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
+++.+.|++.++.+|+++++.+.++.+||+||.+.+.++|..|.+.|+++|++|+++.+|+.++++++|||++.|++++|
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~ 81 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIP 81 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEec
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccc
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL 173 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
+++..+.+++.++++..+++++++++...... . .++ ++..+ .+.+.......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~-~~~~~----------------~~~~~~~~~~~ 133 (503)
T PRK04813 82 VDVSSPAERIEMIIEVAKPSLIIATEELPLEI-------L----GIP-VITLD----------------ELKDIFATGNP 133 (503)
T ss_pred CCCCChHHHHHHHHHhcCCCEEEecccccccc-------c----CCc-EEehH----------------Hhhhhhhcccc
Confidence 99999999999999999999999987541100 0 111 11111 01111110111
Q ss_pred cccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEE
Q 046637 174 REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNV 253 (301)
Q Consensus 174 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v 253 (301)
........++++++++|||||||.||+|.++|.++..........+.+..+++++...|++|..++..++.++..|++++
T Consensus 134 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v 213 (503)
T PRK04813 134 YDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLV 213 (503)
T ss_pred ccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEE
Confidence 11123356788999999999999999999999999988887777888889999999999999999887888999999999
Q ss_pred eeCC---CCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccC
Q 046637 254 CQRT---VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRG 298 (301)
Q Consensus 254 ~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 298 (301)
+.+. .++..+++.++++++|++..+|++++.++........++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~ 261 (503)
T PRK04813 214 ALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPN 261 (503)
T ss_pred EcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCC
Confidence 9874 58999999999999999999999999887665544445444
No 99
>PRK05691 peptide synthase; Validated
Probab=100.00 E-value=7.6e-34 Score=305.57 Aligned_cols=260 Identities=16% Similarity=0.130 Sum_probs=219.3
Q ss_pred cccccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 3 GMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
+++..+......++.++|++.++++||++|+++.++.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|
T Consensus 1120 ~~~~~~~~~~~~~l~~~~~~~a~~~p~~~Al~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~l 1199 (4334)
T PRK05691 1120 QWGQAPCAPAQAWLPELLNEQARQTPERIALVWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199 (4334)
T ss_pred hccCCCCCCccCCHHHHHHHHHHhCCCCeEEEECCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 45666666667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
|++++|++++|++|.++.+++.++++++++++++++......+... . .. ..+.++....
T Consensus 1200 ailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~----~----~~-~~~~~~~~~~------------ 1258 (4334)
T PRK05691 1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA----E----GV-SAIALDSLHL------------ 1258 (4334)
T ss_pred HHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc----c----Cc-eEEeeccccc------------
Confidence 9999999999999999999999999999999999987654322110 0 11 1122111100
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLT 242 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~ 242 (301)
. ............++++++++|||||||.||||+++|.++...+......+++.+++++++..|++|..++..+
T Consensus 1259 --~----~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~ 1332 (4334)
T PRK05691 1259 --D----SWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWEC 1332 (4334)
T ss_pred --c----ccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 0 0000111123567899999999999999999999999999988888888899999999999999999998888
Q ss_pred HHHHHhCCeEEeeC---CCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 243 WAVAAQGGTNVCQR---TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 243 ~~~l~~g~~~v~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+.++..|+++++.+ .+++..+++.++++++|++.++|++++.|.+.+
T Consensus 1333 ~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~ 1382 (4334)
T PRK05691 1333 FWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEP 1382 (4334)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCc
Confidence 99999999999985 468999999999999999999999999998654
No 100
>PRK09088 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.8e-33 Score=254.96 Aligned_cols=246 Identities=21% Similarity=0.253 Sum_probs=199.7
Q ss_pred HHHhhhcCCccEEEE--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCC
Q 046637 21 ERSAVVYRDRPSVVY--GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH 98 (301)
Q Consensus 21 ~~~~~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~ 98 (301)
+..++.+||++|+.+ .++.+||+|+.+.+.++|..|.+.|+++|++|+++++|++++++++|||+++|++++|+++..
T Consensus 2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~ 81 (488)
T PRK09088 2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81 (488)
T ss_pred chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccC
Confidence 456788999999987 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccccccCC
Q 046637 99 DSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRR 178 (301)
Q Consensus 99 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (301)
+.+++.++++.++++++++++..... .. ..+.++. +.+..... ......
T Consensus 82 ~~~~~~~~~~~~~~~~ii~~~~~~~~-------------~~-~~~~~~~----------------~~~~~~~~-~~~~~~ 130 (488)
T PRK09088 82 SASELDALLQDAEPRLLLGDDAVAAG-------------RT-DVEDLAA----------------FIASADAL-EPADTP 130 (488)
T ss_pred CHHHHHHHHHhCCCCEEEEcchhhcc-------------cc-cccchhh----------------hhhhcccc-ccccCC
Confidence 99999999999999999998644321 00 0000000 00000000 001112
Q ss_pred CCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCCeEEeeCC
Q 046637 179 PKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQRT 257 (301)
Q Consensus 179 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~~ 257 (301)
....+++++++|||||||.||+|.+||.++...+...........++++++..|++|.+|+.. ++.++..|+++++.+.
T Consensus 131 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~ 210 (488)
T PRK09088 131 SIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNG 210 (488)
T ss_pred CCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCC
Confidence 245678999999999999999999999999887777766667788999999999999999875 5667888999998888
Q ss_pred CCHHHHHHHHH--hcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 258 VNAKEIFDNIT--RHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 258 ~~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
+++..++..+. ++++|+++++|++++.+.+.+.....+++
T Consensus 211 ~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 252 (488)
T PRK09088 211 FEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALR 252 (488)
T ss_pred CCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccc
Confidence 99999999886 48999999999999999987654444443
No 101
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=2.1e-32 Score=252.05 Aligned_cols=280 Identities=20% Similarity=0.238 Sum_probs=212.6
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
..++.++|...++++|+++|+++.++.+||+||.++++++|..|.+ .|+++|++|+++++|++++++++|||+++|+++
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 101 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIV 101 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEECCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 4579999999999999999999999999999999999999999985 899999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCc-----------------c
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVS-----------------T 154 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------------~ 154 (301)
+|++|..+.+++.++++.+++++++++++..+.+.+..... ....++.......... +
T Consensus 102 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (560)
T PRK08974 102 VNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT-----PVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVP 176 (560)
T ss_pred eccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc-----CcceEEEecccccccccccccccchhhhcccccc
Confidence 99999999999999999999999999877665555443321 2233222111100000 0
Q ss_pred cccCCCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh---CCCCCEEEEe
Q 046637 155 VASSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE---MGLMPTYLWC 230 (301)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---~~~~~~~l~~ 230 (301)
.........+.+........ .......++++++|+|||||||.||+|.++|.++..+.......+. ...+++++..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (560)
T PRK08974 177 KYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTA 256 (560)
T ss_pred cccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEe
Confidence 00001112222222222111 1112356789999999999999999999999999877654433332 2446788899
Q ss_pred ccchhhhhhHH-HHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 231 VPMFHCNGWCL-TWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 231 ~p~~h~~g~~~-~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
.|++|.+|+.. .+.++..|+++++.. ..++..+++.++++++|++..+|++++.|++.+.....+++
T Consensus 257 ~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~ 325 (560)
T PRK08974 257 LPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFS 325 (560)
T ss_pred CcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCcc
Confidence 99999999764 566788888877764 56889999999999999999999999999987655544443
No 102
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=100.00 E-value=1.3e-33 Score=257.87 Aligned_cols=244 Identities=15% Similarity=0.126 Sum_probs=190.0
Q ss_pred CC-HHHHHHHHhhhcCCccEEEECC----eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 14 LT-PISFLERSAVVYRDRPSVVYGD----VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 14 ~~-~~~~l~~~~~~~~~~~al~~~~----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
|| +.+.|+++++++|+++|+++.+ +++||+||.++++++|..|.+. ++||+|+++++|++++++++|||+++|
T Consensus 1 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G 78 (525)
T PRK05851 1 MNELAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAG 78 (525)
T ss_pred CchHHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcC
Confidence 34 7899999999999999999976 7899999999999999999988 899999999999999999999999999
Q ss_pred ceeeecCC-------CCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 89 AVLCTLNT-------RHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 89 ~~~v~l~~-------~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
+++++++. ....+++.++++.++++++|++......+.... . . + .+.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~---~----~---~-~~~~~~~----------- 136 (525)
T PRK05851 79 AAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVD---S----S---V-TVHDLAT----------- 136 (525)
T ss_pred CCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhh---c----c---c-ccccccc-----------
Confidence 98654321 122355667789999999999876543332211 0 0 1 0110000
Q ss_pred ccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCC-CCCEEEEeccchhhhhhH
Q 046637 162 LEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMG-LMPTYLWCVPMFHCNGWC 240 (301)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~~~~~l~~~p~~h~~g~~ 240 (301)
..... .........++++++|+|||||||.||||++||.++..++......+++. .+|++++..|++|.+|+.
T Consensus 137 -----~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 210 (525)
T PRK05851 137 -----AAHTN-RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLA 210 (525)
T ss_pred -----ccccc-ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHH
Confidence 00000 00000124678999999999999999999999999999888888888888 899999999999999998
Q ss_pred HHHHHHHhCCeEEeeC--CC--CHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 241 LTWAVAAQGGTNVCQR--TV--NAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 241 ~~~~~l~~g~~~v~~~--~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
.++.++..|+++++.+ .+ ++..+++.++++++|++..+|.++..+.+
T Consensus 211 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~ 261 (525)
T PRK05851 211 FLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGK 261 (525)
T ss_pred HHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHH
Confidence 8888999999999986 24 68899999999999988665555555543
No 103
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=100.00 E-value=5.8e-34 Score=243.62 Aligned_cols=271 Identities=18% Similarity=0.254 Sum_probs=227.1
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECC-----------------------eeeeHHHHHHHHHHHHHHHHhcCCCCCCE-EE
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGD-----------------------VQYTWKETHQRCVKLASGLAHLGISPGDV-VA 68 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~-----------------------~~~Ty~el~~~~~~la~~L~~~gv~~g~~-V~ 68 (301)
-.+++++|+..+++++++.++...+ .++||+|+..++..++++|.+.|++++++ ++
T Consensus 40 ~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~ 119 (678)
T KOG1180|consen 40 ASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIA 119 (678)
T ss_pred cccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence 5678999999999999999987532 47999999999999999999999997766 99
Q ss_pred EEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCC
Q 046637 69 ALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPEC 148 (301)
Q Consensus 69 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 148 (301)
|+++-+.+|.+++.||++-+..+|.++..+..+.+.+-|+.++++.+|++.+.+..+...+...+ .++.+|.++..
T Consensus 120 iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~----~vk~II~~d~i 195 (678)
T KOG1180|consen 120 IFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAK----TVKHIIYFDPI 195 (678)
T ss_pred EEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccC----ceeEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999888777777666 78999998853
Q ss_pred CCCCccc------ccCCCCccHHHHHhhccccc-cCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh-h
Q 046637 149 GEPVSTV------ASSSGNLEYESLLAIGKLRE-VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN-E 220 (301)
Q Consensus 149 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~ 220 (301)
+...... .......+|+++.+-+.... .+..+.++|+|+|+|||||||.||||+++|.|+++.+....... .
T Consensus 196 d~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~ 275 (678)
T KOG1180|consen 196 DYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPE 275 (678)
T ss_pred CCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcc
Confidence 3221111 12344578999998887772 22334789999999999999999999999999999988877666 6
Q ss_pred CCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCCHHH--------HHHHHHhcCcceecCChHHHHHHHc
Q 046637 221 MGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKE--------IFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 221 ~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~~~--------~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
+.+.|+++..+|+.|++.+.+=+.++.-|+.+-+.+..+..+ ---.+...|||.+.++|.++.++.+
T Consensus 276 lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrK 350 (678)
T KOG1180|consen 276 LGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRK 350 (678)
T ss_pred cCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHH
Confidence 789999999999999999999899999999988764221111 1123567799999999999998765
No 104
>PRK05850 acyl-CoA synthetase; Validated
Probab=100.00 E-value=3.6e-33 Score=257.97 Aligned_cols=251 Identities=20% Similarity=0.232 Sum_probs=193.9
Q ss_pred CCHHHHHHHHhhhcCCccEEEECC---------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHh
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGD---------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGV 84 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~ 84 (301)
+++.+.|++.+..+|+++|+++.+ +.+||+||.+++.++|+.|.+.| .+||+|+++++|++++++++|||
T Consensus 1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~ 79 (578)
T PRK05850 1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA 79 (578)
T ss_pred CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence 468899999999999999999742 68999999999999999999999 68999999999999999999999
Q ss_pred hhccceeeecCC---CCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCC
Q 046637 85 PMAGAVLCTLNT---RHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGN 161 (301)
Q Consensus 85 ~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 161 (301)
+++|++++|+++ ..+.+++.++++.+++++++++++....+.+........ ....++.++....
T Consensus 80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----------- 146 (578)
T PRK05850 80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQ--SAPPVIEVDLLDL----------- 146 (578)
T ss_pred HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccc--cccceEeeccccc-----------
Confidence 999999999997 457899999999999999999887665544332211100 1222332221100
Q ss_pred ccHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh-h-----CCCCCEEEEeccchh
Q 046637 162 LEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN-E-----MGLMPTYLWCVPMFH 235 (301)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~-----~~~~~~~l~~~p~~h 235 (301)
. .. .........++++++|+|||||||.||||+++|.+++.++......+ . ...++++++..|++|
T Consensus 147 ---~---~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h 218 (578)
T PRK05850 147 ---D---SP--RGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYH 218 (578)
T ss_pred ---c---cC--CccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCC
Confidence 0 00 00111235668999999999999999999999999988776554332 2 345789999999999
Q ss_pred hhhhHH-HHHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHH
Q 046637 236 CNGWCL-TWAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIA 286 (301)
Q Consensus 236 ~~g~~~-~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 286 (301)
.+|+.. ++.+++.|+++++.+. .+|..+++.+++++++.....+..+..+.
T Consensus 219 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~p~~~~~~~~ 274 (578)
T PRK05850 219 DMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFSAAPNFAFELAV 274 (578)
T ss_pred CchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEEeCCcHHHHHHH
Confidence 999874 7888999999998864 27999999999999986654444344443
No 105
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=100.00 E-value=7.1e-33 Score=273.96 Aligned_cols=267 Identities=20% Similarity=0.170 Sum_probs=209.9
Q ss_pred CCCCCHHHHHHHHhhhcC-CccEEEE-CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 11 YVPLTPISFLERSAVVYR-DRPSVVY-GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~-~~~al~~-~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
....++.+.|.+.++++| ++.++.+ +++.+||+|+.++++++|+.|++ |+++||+|+++++|+++++++++||+++|
T Consensus 628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G 706 (1140)
T PRK06814 628 DYDRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAG 706 (1140)
T ss_pred cccCCHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCC
Confidence 345778899999999987 4567666 46799999999999999999975 99999999999999999999999999999
Q ss_pred ceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhH--HHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHH
Q 046637 89 AVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIA--QGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYES 166 (301)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 166 (301)
++++|++|..+.+++.++++++++++++++++..+.. .+..+..+ ....++.+++..+.. .....+.+
T Consensus 707 ~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~------~~~~~~~~ 776 (1140)
T PRK06814 707 RVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALE----FGIRIIYLEDVRAQI------GLADKIKG 776 (1140)
T ss_pred CEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhc----cCceEEEehHhhccC------ChHHHHHH
Confidence 9999999999999999999999999999987654322 11112221 223444444321100 00011112
Q ss_pred HHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH-HHHHH
Q 046637 167 LLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC-LTWAV 245 (301)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~-~~~~~ 245 (301)
...............++++++|+|||||||.||||.+||.++..+.......+++.++|++++.+|++|.+|+. ..+.+
T Consensus 777 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~ 856 (1140)
T PRK06814 777 LLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLP 856 (1140)
T ss_pred HhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHH
Confidence 11111111111135678999999999999999999999999998888888888899999999999999999985 47788
Q ss_pred HHhCCeEEeeCC-CCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 246 AAQGGTNVCQRT-VNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 246 l~~g~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+..|+++++.++ .++..+.+.++++++|++..+|++++.+.+.
T Consensus 857 l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~ 900 (1140)
T PRK06814 857 LLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARY 900 (1140)
T ss_pred HHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhh
Confidence 999999998874 5678899999999999999999999998865
No 106
>PRK13391 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=2.3e-32 Score=249.11 Aligned_cols=257 Identities=21% Similarity=0.244 Sum_probs=204.0
Q ss_pred HHHHhhhcCCccEEEE--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCC
Q 046637 20 LERSAVVYRDRPSVVY--GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTR 97 (301)
Q Consensus 20 l~~~~~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~ 97 (301)
....++++|+++|+++ .++.+||+||.+.+.++++.|.+.|+++|++|+++++|++++++++|||++.|++++++++.
T Consensus 3 ~~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~ 82 (511)
T PRK13391 3 PGIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82 (511)
T ss_pred hhhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccc
Confidence 3467888999999987 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccccccC
Q 046637 98 HDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVR 177 (301)
Q Consensus 98 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (301)
.+.+++.++++.++++.++++........+...... .....+.++.... ......+.+...... ..
T Consensus 83 ~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~ 148 (511)
T PRK13391 83 LTPAEAAYIVDDSGARALITSAAKLDVARALLKQCP----GVRHRLVLDGDGE-------LEGFVGYAEAVAGLP---AT 148 (511)
T ss_pred cCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCC----CceEEEEecCCCC-------CcccccHHHHhcCCC---CC
Confidence 999999999999999999999877665555544333 2333344332111 011223443332211 11
Q ss_pred CCCCCCCceEEEeccCCCCCCCeeee--chHHHHH---HHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeE
Q 046637 178 RPKDECDPIALNYTSGTTSSPKGVIC--SHRGAYL---NSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTN 252 (301)
Q Consensus 178 ~~~~~~~~~~i~~TSGtTG~pK~v~~--s~~~l~~---~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~ 252 (301)
.....++.++++|||||||.||||.+ +|.++.. ........+.+..++++++..|++|.+|+...+.++..|+++
T Consensus 149 ~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~ 228 (511)
T PRK13391 149 PIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTV 228 (511)
T ss_pred CCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceE
Confidence 11234467899999999999999995 4665432 223344556778899999999999999988778889999999
Q ss_pred EeeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 253 VCQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 253 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
++.+.+++..+++.++++++|++.++|+++..+.+...
T Consensus 229 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~ 266 (511)
T PRK13391 229 IVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPE 266 (511)
T ss_pred EECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCch
Confidence 99998999999999999999999999999999887543
No 107
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=100.00 E-value=1.3e-32 Score=247.37 Aligned_cols=234 Identities=20% Similarity=0.225 Sum_probs=195.5
Q ss_pred CHHHHH-HHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 15 TPISFL-ERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 15 ~~~~~l-~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
++.+.+ ...++++|+++|+++.++.+||+||.+.++++|..|.+.|+++|++|+++++|+++++++++||+++|++++|
T Consensus 3 ~~~~~~~~~~a~~~~~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~ 82 (458)
T PRK09029 3 IFSDWPWRHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLP 82 (458)
T ss_pred hhhcChHHHHHHhCCCceeeecCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEee
Confidence 334444 4568899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccc
Q 046637 94 LNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKL 173 (301)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
+++..+.+++..+++.+++++++++++.... . .+..... .. . .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-----------~~~~~~~-~~----------------------~--~ 125 (458)
T PRK09029 83 LNPQLPQPLLEELLPSLTLDFALVLEGENTF-S-----------ALTSLHL-QL----------------------V--E 125 (458)
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEcCcccch-h-----------hcccccc-cc----------------------c--c
Confidence 9999999999999999999999998765321 0 0110000 00 0 0
Q ss_pred cccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEE
Q 046637 174 REVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNV 253 (301)
Q Consensus 174 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v 253 (301)
........++++++++|||||||.||||.+||.+++.........++...+++++...|++|.+|+...+.++..|++++
T Consensus 126 ~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~ 205 (458)
T PRK09029 126 GAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLV 205 (458)
T ss_pred ccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceEE
Confidence 00112356788999999999999999999999999998888888888899999999999999999887788899999999
Q ss_pred eeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 254 CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 254 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
+.+. ..+++.+. ++|.+..+|+++..++....
T Consensus 206 ~~~~---~~~~~~i~--~~t~~~~~P~~~~~l~~~~~ 237 (458)
T PRK09029 206 VRDK---QPLEQALA--GCTHASLVPTQLWRLLDNRS 237 (458)
T ss_pred eCCh---HHHHHHHh--hceeeecChHHHHHHHhccc
Confidence 8764 56777774 79999999999999987644
No 108
>PRK13390 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=3.3e-32 Score=247.49 Aligned_cols=248 Identities=23% Similarity=0.293 Sum_probs=191.5
Q ss_pred HHhhhcCCccEEEEC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCC
Q 046637 22 RSAVVYRDRPSVVYG--DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHD 99 (301)
Q Consensus 22 ~~~~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~ 99 (301)
..++++|+++|+.+. ++.+||+||.+.++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|+++..+
T Consensus 5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~ 84 (501)
T PRK13390 5 THAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT 84 (501)
T ss_pred hhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence 467789999999874 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccccccCCC
Q 046637 100 SAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRP 179 (301)
Q Consensus 100 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (301)
.+++.++++.++++++++++.......+... .....+.+.... .....+++....... ..
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~----~~ 144 (501)
T PRK13390 85 APEADYIVGDSGARVLVASAALDGLAAKVGA-------DLPLRLSFGGEI---------DGFGSFEAALAGAGP----RL 144 (501)
T ss_pred HHHHHHHHHhcCCcEEEEcchhhhHHHHhhh-------ccceEEEecCcc---------cccccHHHHhcccCC----CC
Confidence 9999999999999999998654332222111 112122222110 011233333221110 01
Q ss_pred CCCCCceEEEeccCCCCCCCeeee--chHHHHHHH---H-HHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEE
Q 046637 180 KDECDPIALNYTSGTTSSPKGVIC--SHRGAYLNS---L-AAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNV 253 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~--s~~~l~~~~---~-~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v 253 (301)
....+.++|+|||||||.||||++ +|.++..+. . .....+.+..++++++..|++|.+++...+..+..|++++
T Consensus 145 ~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~ 224 (501)
T PRK13390 145 TEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHALGGTVV 224 (501)
T ss_pred CCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHhcCceEE
Confidence 122357999999999999999995 555554322 1 1233567788999999999999999765555677899999
Q ss_pred eeCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 254 CQRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 254 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+.+.+++..+++.++++++|++.++|+++..|++..
T Consensus 225 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 260 (501)
T PRK13390 225 LAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLD 260 (501)
T ss_pred EcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhcc
Confidence 988899999999999999999999999999998754
No 109
>PRK09192 acyl-CoA synthetase; Validated
Probab=100.00 E-value=4.2e-32 Score=250.80 Aligned_cols=251 Identities=22% Similarity=0.170 Sum_probs=196.6
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECC---eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGD---VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA 89 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~---~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 89 (301)
-+++.++|+..++.+|+..++...+ +.+||+||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~ 99 (579)
T PRK09192 20 FPTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGL 99 (579)
T ss_pred hhhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCC
Confidence 3688999999999998776654332 6799999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCC-------HHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 90 VLCTLNTRHD-------SAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 90 ~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
+++|+++..+ .+++.++++.++++++++++.....+.+.... .+.+...
T Consensus 100 ~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~-------~~~~~~~----------------- 155 (579)
T PRK09192 100 VPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHG-------NPLLHVL----------------- 155 (579)
T ss_pred eeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcc-------cccccee-----------------
Confidence 9999976432 68999999999999999987665444333211 1111111
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH-HhhCCCCCEEEEeccchhhhhhHH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL-FNEMGLMPTYLWCVPMFHCNGWCL 241 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~l~~~p~~h~~g~~~ 241 (301)
.+.++..............++++++|+|||||||.||||.++|.+++.+...... .+++.++|+++..+|++|.+|+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~ 235 (579)
T PRK09192 156 SHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVG 235 (579)
T ss_pred ehhhhcccCCCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHH
Confidence 1111111111111112355689999999999999999999999999988877766 778899999999999999999874
Q ss_pred -HHHHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 242 -TWAVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 242 -~~~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
++.++..|+++++.+. .++..+++.+.++++|.++..|.++..+.+
T Consensus 236 ~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~ 286 (579)
T PRK09192 236 FLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCAR 286 (579)
T ss_pred HHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHH
Confidence 6667888999877752 378999999999999988876665655543
No 110
>PRK08308 acyl-CoA synthetase; Validated
Probab=100.00 E-value=7.3e-32 Score=239.51 Aligned_cols=208 Identities=16% Similarity=0.124 Sum_probs=185.0
Q ss_pred EEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcC
Q 046637 32 SVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSE 111 (301)
Q Consensus 32 al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 111 (301)
++++.++++||+||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..++++++
T Consensus 1 ~~~~~~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~ 79 (414)
T PRK08308 1 MLIVNDEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAG 79 (414)
T ss_pred CeEecCceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCC
Confidence 36778899999999999999999985 68999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccccccCCCCCCCCceEEEec
Q 046637 112 AKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYT 191 (301)
Q Consensus 112 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T 191 (301)
++++++++.... .. . .....++++++++||
T Consensus 80 ~~~~i~~~~~~~---------------~~------~-----------------------------~~~~~~~~~~~i~~T 109 (414)
T PRK08308 80 CHGLLYGESDFT---------------KL------E-----------------------------AVNYLAEEPSLLQYS 109 (414)
T ss_pred CCEEEecCcccc---------------cc------c-----------------------------CCCCCCCCceEEEEC
Confidence 999998753110 00 0 001456789999999
Q ss_pred cCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCCeEEeeCCCCHHHHHHHHHhc
Q 046637 192 SGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQRTVNAKEIFDNITRH 270 (301)
Q Consensus 192 SGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~~~~~~~~~~~i~~~ 270 (301)
|||||.||||++||.++..+.......+....+++.+...|++|.+|+.. ++.++..|+++++.+.+++..+++.++++
T Consensus 110 SGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~ 189 (414)
T PRK08308 110 SGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNT 189 (414)
T ss_pred CCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHh
Confidence 99999999999999999988888778888889999999999999999764 78889999999999989999999999999
Q ss_pred CcceecCChHHHHHHHcCCC
Q 046637 271 KVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 271 ~~t~~~~~P~~~~~l~~~~~ 290 (301)
++|.++++|+++..+.+...
T Consensus 190 ~~t~~~~~P~~~~~l~~~~~ 209 (414)
T PRK08308 190 PQHILYAVPLMLHILGRLLP 209 (414)
T ss_pred CCeEEEcCHHHHHHHHhcCC
Confidence 99999999999999987643
No 111
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=100.00 E-value=4.9e-31 Score=240.25 Aligned_cols=250 Identities=26% Similarity=0.351 Sum_probs=195.1
Q ss_pred cEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhc
Q 046637 31 PSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHS 110 (301)
Q Consensus 31 ~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~ 110 (301)
.|++.+++.+||+||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|+++++++|..+.+++.++++.+
T Consensus 3 ~~~~~~~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~ 82 (509)
T PRK12406 3 ATIISGDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDS 82 (509)
T ss_pred eEEEECCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhcc
Confidence 46777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCC-------CcccccCCCCccHHHHHhhccccccCCCCCCC
Q 046637 111 EAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEP-------VSTVASSSGNLEYESLLAIGKLREVRRPKDEC 183 (301)
Q Consensus 111 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (301)
++++++++......+.+... ....++......+. ............++++..... .......+
T Consensus 83 ~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 152 (509)
T PRK12406 83 GARVLIAHADLLHGLASALP-------AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE---PYDGPPVP 152 (509)
T ss_pred CCcEEEEccchhhhhhhhhh-------cccceeecccccccccccccccccccCCCCccCHHHHhcccC---ccCCCCCC
Confidence 99999998776554332221 11112211111000 000011122345555543221 11234568
Q ss_pred CceEEEeccCCCCCCCeeeechHHH---HHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCCH
Q 046637 184 DPIALNYTSGTTSSPKGVICSHRGA---YLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNA 260 (301)
Q Consensus 184 ~~~~i~~TSGtTG~pK~v~~s~~~l---~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~ 260 (301)
++++++|||||||.||+|.++|.+. ..........+++..++++++..|++|..+....+.++..|+++++.+.+++
T Consensus 153 ~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 232 (509)
T PRK12406 153 QPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDP 232 (509)
T ss_pred CceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCH
Confidence 9999999999999999999876653 3333344456778899999999999999988777778889999999888899
Q ss_pred HHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 261 KEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 261 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
..+++.++++++|++..+|+++..|++.+.
T Consensus 233 ~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~ 262 (509)
T PRK12406 233 EELLQLIERHRITHMHMVPTMFIRLLKLPE 262 (509)
T ss_pred HHHHHHHHHcCCeEEEccHHHHHHHHhCch
Confidence 999999999999999999999999987654
No 112
>PRK07787 acyl-CoA synthetase; Validated
Probab=100.00 E-value=3.1e-31 Score=239.30 Aligned_cols=224 Identities=23% Similarity=0.206 Sum_probs=189.7
Q ss_pred hhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHH
Q 046637 24 AVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMV 103 (301)
Q Consensus 24 ~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l 103 (301)
.+..++++|+++.++++||+||.++++++|..|+ ++|+|+++++|++++++++|||+++|++++|+++..+.+++
T Consensus 10 ~~~~~~~~a~~~~~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l 84 (471)
T PRK07787 10 AAAADIADAVRIGGRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAER 84 (471)
T ss_pred hcccCCceEEEeCCcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHH
Confidence 4456889999999999999999999999999996 57999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccccccCCCCCCC
Q 046637 104 SVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDEC 183 (301)
Q Consensus 104 ~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (301)
.++++.+++++++++.+... . .++.+...... ..+. ......++
T Consensus 85 ~~~l~~~~~~~il~~~~~~~---------~----~~~~~~~~~~~-------------~~~~----------~~~~~~~~ 128 (471)
T PRK07787 85 RHILADSGAQAWLGPAPDDP---------A----GLPHVPVRLHA-------------RSWH----------RYPEPDPD 128 (471)
T ss_pred HHHHHhcCCCEEEecCCccc---------c----cccceeeeccc-------------cccc----------cCCCCCCC
Confidence 99999999999999763110 0 11211110000 0000 01124568
Q ss_pred CceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCCeEEeeCCCCHHH
Q 046637 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQRTVNAKE 262 (301)
Q Consensus 184 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~~~~~~~ 262 (301)
++++|+|||||||.||||.++|.++..+.......+++..++++++.+|++|.+|+.. ++.++..|+++++.+.+++..
T Consensus 129 ~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~ 208 (471)
T PRK07787 129 APALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEA 208 (471)
T ss_pred ceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHH
Confidence 9999999999999999999999999998888878888889999999999999999775 788899999999998899999
Q ss_pred HHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 263 IFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 263 ~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+++.++ +++|++.++|+++..|++.+
T Consensus 209 ~~~~i~-~~~t~~~~~P~~~~~l~~~~ 234 (471)
T PRK07787 209 YAQALS-EGGTLYFGVPTVWSRIAADP 234 (471)
T ss_pred HHHHHh-hCceEEEcchHHHHHHHhCc
Confidence 999999 99999999999999998754
No 113
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=6.4e-31 Score=239.14 Aligned_cols=246 Identities=28% Similarity=0.324 Sum_probs=194.9
Q ss_pred cEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhc
Q 046637 31 PSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHS 110 (301)
Q Consensus 31 ~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~ 110 (301)
.++.+.++.+||+||.+.+.++++.|.+.|+++||+|+++++|++++++++|||+++|++++|+++..+.+++.++++.+
T Consensus 3 ~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~ 82 (502)
T PRK08276 3 VIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDS 82 (502)
T ss_pred eEecCCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcC
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccccccCCCCCCCCceEEEe
Q 046637 111 EAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNY 190 (301)
Q Consensus 111 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 190 (301)
+++++++++.......+....... ..+.+++.+... .....|++....... ......++.++++|
T Consensus 83 ~~~~ii~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~~~~~---~~~~~~~~~a~i~~ 147 (502)
T PRK08276 83 GAKVLIVSAALADTAAELAAELPA---GVPLLLVVAGPV---------PGFRSYEEALAAQPD---TPIADETAGADMLY 147 (502)
T ss_pred CCCEEEEccchhhHHHHHhhhccc---cccEEEEeCCCC---------CccccHHHHHhcCCC---CCCCCCCcceEEEE
Confidence 999999998776655544333220 234444432211 122345554432211 11234567899999
Q ss_pred ccCCCCCCCeeeechHHHHHHHH------HHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCCHHHHH
Q 046637 191 TSGTTSSPKGVICSHRGAYLNSL------AAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIF 264 (301)
Q Consensus 191 TSGtTG~pK~v~~s~~~l~~~~~------~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~ 264 (301)
||||||.||+|.++|.++..... ..........++++++..|++|.+++...+.++..|+++++.+.+++..++
T Consensus 148 TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (502)
T PRK08276 148 SSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEAL 227 (502)
T ss_pred CCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHH
Confidence 99999999999999877543221 111122234678999999999999988778899999999999889999999
Q ss_pred HHHHhcCcceecCChHHHHHHHcCCCC
Q 046637 265 DNITRHKVTHFGGAPTVLNMIANAPPV 291 (301)
Q Consensus 265 ~~i~~~~~t~~~~~P~~~~~l~~~~~~ 291 (301)
+.++++++|++.++|+++..+++.+..
T Consensus 228 ~~i~~~~~t~~~~~P~~~~~l~~~~~~ 254 (502)
T PRK08276 228 ALIERYRVTHSQLVPTMFVRMLKLPEE 254 (502)
T ss_pred HHHHHhCCeEEEehHHHHHHHHhCccc
Confidence 999999999999999999999987653
No 114
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=5.2e-31 Score=242.02 Aligned_cols=245 Identities=25% Similarity=0.221 Sum_probs=196.3
Q ss_pred CHHHHHHHHhhhcCCccEEEECC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 15 TPISFLERSAVVYRDRPSVVYGD--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 15 ~~~~~l~~~~~~~~~~~al~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
++.+.+...++.+|+.+++...+ +.+||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~ 82 (545)
T PRK07768 3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT 82 (545)
T ss_pred hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence 57788889999999999996644 6899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHH-------HHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHH
Q 046637 93 TLNTRHDSAMV-------SVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYE 165 (301)
Q Consensus 93 ~l~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 165 (301)
++++..+.+++ .++++.++++.+++++........... ....+ ..++
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~-------------------~~~~ 136 (545)
T PRK07768 83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE-------KGIRV-------------------LTVA 136 (545)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc-------cCCce-------------------eehh
Confidence 99988776544 456788899999998765433322110 00111 2223
Q ss_pred HHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCC-CEEEEeccchhhhhhHH-HH
Q 046637 166 SLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLM-PTYLWCVPMFHCNGWCL-TW 243 (301)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~-~~~l~~~p~~h~~g~~~-~~ 243 (301)
++...... ......++++++|+|||||||.||||+++|.+++.+.......+++..+ |++++.+|++|.+|+.. ++
T Consensus 137 ~l~~~~~~--~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~ 214 (545)
T PRK07768 137 DLLAADPI--DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLT 214 (545)
T ss_pred hhcccCCC--CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHH
Confidence 33221111 1123567899999999999999999999999999888877777787776 89999999999999875 56
Q ss_pred HHHHhCCeEEeeCC----CCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 244 AVAAQGGTNVCQRT----VNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 244 ~~l~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
.++..|+++++.+. .++..+++.++++++|++..+|.++..+.+
T Consensus 215 ~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 262 (545)
T PRK07768 215 VPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLAR 262 (545)
T ss_pred HHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHH
Confidence 67999999988763 378889999999999999888888776654
No 115
>TIGR03089 conserved hypothetical protein TIGR03089. This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=100.00 E-value=9.5e-31 Score=212.10 Aligned_cols=216 Identities=14% Similarity=0.080 Sum_probs=163.9
Q ss_pred HHHHhhhcCCccEEEEC-C-----eeeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 20 LERSAVVYRDRPSVVYG-D-----VQYTWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 20 l~~~~~~~~~~~al~~~-~-----~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
+...++++|+++|+++. + .++||+|+.+++.++|..|++ .|+++||+|+++++|+++++++++||+++|++++
T Consensus 2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v 81 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV 81 (227)
T ss_pred hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 46678889999999852 2 369999999999999999998 7999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCC-cccccCCCCccHHHHHhhc
Q 046637 93 TLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPV-STVASSSGNLEYESLLAIG 171 (301)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 171 (301)
|++ .+++++++++.+....... . +.++.+....... .......+...|.+.....
T Consensus 82 p~n-------------~s~a~~~v~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (227)
T TIGR03089 82 LAG-------------DPDADVVVTGPDRLAAAAG----------S-GEVVALSLDPLGRRVAGELPPGVIDFAPEVRVH 137 (227)
T ss_pred eCC-------------CCCCCEEEeCcchhhhccc----------C-CceEEEeccccccCCCCCCCCcccchhhhhhcc
Confidence 994 7899999999877655320 1 2233322110000 0000112334566555432
Q ss_pred ccc-ccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH-HHHHHHhC
Q 046637 172 KLR-EVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQG 249 (301)
Q Consensus 172 ~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g 249 (301)
... .......++|++.|+||||+ +|.+++.+. ...++.++|+++ .+|++|++|+.. ++.++..|
T Consensus 138 ~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G 203 (227)
T TIGR03089 138 GDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAG 203 (227)
T ss_pred CCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccC
Confidence 222 11113466899999999985 666665544 456788999999 999999999874 78899999
Q ss_pred CeEEeeCCCCHHHHHHHHHhcCcc
Q 046637 250 GTNVCQRTVNAKEIFDNITRHKVT 273 (301)
Q Consensus 250 ~~~v~~~~~~~~~~~~~i~~~~~t 273 (301)
+++|+.++|++..+++.|+++|||
T Consensus 204 ~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 204 GSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred ceEEEecCCCHHHHHHHHHhhcCC
Confidence 999999999999999999999997
No 116
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=99.98 E-value=1.4e-30 Score=232.76 Aligned_cols=216 Identities=23% Similarity=0.318 Sum_probs=182.0
Q ss_pred eHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCC
Q 046637 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120 (301)
Q Consensus 41 Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (301)
||+||.+.++++|..|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred chhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCCC
Q 046637 121 LLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSPK 199 (301)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK 199 (301)
..... .. . ..+.++....... ........+++++++|||||||.||
T Consensus 81 ~~~~~-------------~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK 127 (436)
T TIGR01923 81 LEEKD-------------FQ-A-------------------DSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPK 127 (436)
T ss_pred ccccc-------------ee-e-------------------cchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCc
Confidence 32110 00 0 0000000000000 1112355678999999999999999
Q ss_pred eeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCCh
Q 046637 200 GVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 200 ~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P 279 (301)
+|.++|.++...+......+++.++|++++..|++|.+|+...+.++..|+++++.+.++ .+++.++++++|++.++|
T Consensus 128 ~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~--~~~~~l~~~~~t~~~~~P 205 (436)
T TIGR01923 128 AVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFN--QLLEMIANERVTHISLVP 205 (436)
T ss_pred EEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHH--HHHHHHHHhCCeEEEeHH
Confidence 999999999998888888889999999999999999999888889999999999987653 999999999999999999
Q ss_pred HHHHHHHcCCCC
Q 046637 280 TVLNMIANAPPV 291 (301)
Q Consensus 280 ~~~~~l~~~~~~ 291 (301)
+++..+++....
T Consensus 206 ~~l~~l~~~~~~ 217 (436)
T TIGR01923 206 TQLNRLLDEGGH 217 (436)
T ss_pred HHHHHHHhCcCC
Confidence 999999987543
No 117
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=99.97 E-value=1.7e-30 Score=232.78 Aligned_cols=205 Identities=13% Similarity=0.038 Sum_probs=168.8
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEE
Q 046637 39 QYTWKETHQRCVKLASGLAHLGI-SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFV 117 (301)
Q Consensus 39 ~~Ty~el~~~~~~la~~L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 117 (301)
-+.|+||.+++.++|..|.+.|+ ++|++|+++.+|+++++++++||+++|++++|++|.++.+++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 46799999999999999999988 57999999999999999999999999999999999999999999999999999998
Q ss_pred cCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccccccCCCCCCCCceEEEeccCCCCC
Q 046637 118 DYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNYTSGTTSS 197 (301)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~ 197 (301)
++..... . ... .. . ......++++++++|||||||.
T Consensus 99 ~~~~~~~--------------~-----~~~--------------~~------~-----~~~~~~~~~~~~i~~TSGTTG~ 134 (452)
T PRK07445 99 LDQLKLS--------------H-----PPP--------------LP------S-----QGILPNLETGWIMIPTGGSSGQ 134 (452)
T ss_pred cCccccc--------------c-----CCC--------------CC------c-----cccCCCCCCcEEEEeCCCCCCC
Confidence 7653210 0 000 00 0 0011356899999999999999
Q ss_pred CCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecC
Q 046637 198 PKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 198 pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~ 277 (301)
||||++||.++..+.......+.+.+ +++++.+|++|.+|+..++.++..|+++++.+..+.........++++|++.+
T Consensus 135 PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~ 213 (452)
T PRK07445 135 IRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSL 213 (452)
T ss_pred CcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEe
Confidence 99999999999888777766666654 46788999999999988889999999999987433333334445789999999
Q ss_pred ChHHHHHHHcC
Q 046637 278 APTVLNMIANA 288 (301)
Q Consensus 278 ~P~~~~~l~~~ 288 (301)
+|++++.+++.
T Consensus 214 vP~~l~~l~~~ 224 (452)
T PRK07445 214 VPTQLQRLLQL 224 (452)
T ss_pred hHHHHHHHHhh
Confidence 99999999863
No 118
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=99.97 E-value=9.5e-30 Score=225.43 Aligned_cols=225 Identities=24% Similarity=0.253 Sum_probs=186.0
Q ss_pred eHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 41 TWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 41 Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
||+||.+.++++++.|.+ .|+++||+|+++++|+++++++++||++.|++++|+++..+.+++.++++.+++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred CchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhcccc-ccCCCCCCCCceEEEeccCCCCCC
Q 046637 120 QLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLR-EVRRPKDECDPIALNYTSGTTSSP 198 (301)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~p 198 (301)
.....+... ...+...... +.......... ........+++++++|||||||.|
T Consensus 81 ~~~~~~~~~----------~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~p 135 (408)
T TIGR01733 81 ALASRLAGL----------VLPIILVDPL---------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRP 135 (408)
T ss_pred chhhhcccc----------CCceEEechh---------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCC
Confidence 765433221 1122222111 00000000000 011114578999999999999999
Q ss_pred CeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCC---HHHHHHHHHhcCccee
Q 046637 199 KGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVN---AKEIFDNITRHKVTHF 275 (301)
Q Consensus 199 K~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~---~~~~~~~i~~~~~t~~ 275 (301)
|+|.+||.++..........+.+..++++++..|++|.+++...+.++..|+++++.+... +..+.+.++++++|.+
T Consensus 136 K~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l 215 (408)
T TIGR01733 136 KGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVL 215 (408)
T ss_pred CEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEE
Confidence 9999999999998888888888889999999999999999888899999999999987543 6899999999999999
Q ss_pred cCChHHHHHHHcCCC
Q 046637 276 GGAPTVLNMIANAPP 290 (301)
Q Consensus 276 ~~~P~~~~~l~~~~~ 290 (301)
.++|.+++.|++...
T Consensus 216 ~~~p~~~~~l~~~~~ 230 (408)
T TIGR01733 216 NLTPSLLALLAAALP 230 (408)
T ss_pred EeCHHHHHHHHHhhh
Confidence 999999999998754
No 119
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=99.97 E-value=3.9e-29 Score=222.76 Aligned_cols=269 Identities=21% Similarity=0.256 Sum_probs=210.5
Q ss_pred HHHHHhhh-cCCccEEEECC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcccee
Q 046637 19 FLERSAVV-YRDRPSVVYGD------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVL 91 (301)
Q Consensus 19 ~l~~~~~~-~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (301)
++.+..+. .+|.+++++.+ ..+||.|+.+++.++|..|...|+++||+|++++|+.++++++++||.++|++.
T Consensus 69 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~ 148 (626)
T KOG1175|consen 69 CLDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIH 148 (626)
T ss_pred hhhhhhhhcCCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEE
Confidence 34444333 47888888743 458999999999999999998899999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHH---------HHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 92 CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQ---------GAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
+++...++++++...++.++++++++.+......+ +.....+.........+.+... ....
T Consensus 149 ~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------~~d~ 218 (626)
T KOG1175|consen 149 SSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR----------NRDL 218 (626)
T ss_pred EEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc----------cccc
Confidence 99999999999999999999999999865443221 1111111110011111111111 1125
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHH-HHHHHHHHHHhhCCCCCEEEEeccchhhhhhHH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGA-YLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCL 241 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~ 241 (301)
.+++++............+.+++.+|+|||||||.||++.+++..- +..+......+.+.++|+..+...+-++.|.+.
T Consensus 219 ~~~~~~~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~ 298 (626)
T KOG1175|consen 219 FWSLELKKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSY 298 (626)
T ss_pred cHHHHhhhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccch
Confidence 6677766666665566788999999999999999999999998774 445555666778999999999999999988775
Q ss_pred -HHHHHHhCCeEEeeC--CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCcccccc
Q 046637 242 -TWAVAAQGGTNVCQR--TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFR 297 (301)
Q Consensus 242 -~~~~l~~g~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (301)
.+.+|++|+++++.+ .+++..+++.+.++++|++++.|+.++.|.+.......+.+
T Consensus 299 ~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~ 357 (626)
T KOG1175|consen 299 VLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYS 357 (626)
T ss_pred hhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccc
Confidence 678999999999986 45999999999999999999999999988877665544443
No 120
>PLN03051 acyl-activating enzyme; Provisional
Probab=99.96 E-value=4.2e-28 Score=220.32 Aligned_cols=213 Identities=17% Similarity=0.189 Sum_probs=158.3
Q ss_pred cCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch------hhHHHHHHHhccccCCCCceEE
Q 046637 71 APNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL------PIAQGAFEILSKTSAKLPLLVL 144 (301)
Q Consensus 71 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~i~~ 144 (301)
++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++... ..+.+..... ..+.+++
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~ 75 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAA-----PAKAIVL 75 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcc-----cceEEEE
Confidence 5899999999999999999999999999999999999999999999986531 2222221111 1222222
Q ss_pred ccCCCCCCcccccCCCCccHHHHHhhccc------cc-cCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH
Q 046637 145 VPECGEPVSTVASSSGNLEYESLLAIGKL------RE-VRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL 217 (301)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~ 217 (301)
.... ... ......+...|.++...... .. ......++++++|+|||||||.||||++||.+++.+......
T Consensus 76 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~ 153 (499)
T PLN03051 76 PAAG-EPV-AVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWA 153 (499)
T ss_pred eccC-ccc-CCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHH
Confidence 2111 000 00000122346655422110 01 111235689999999999999999999999998876665555
Q ss_pred HhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCC
Q 046637 218 FNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 218 ~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (301)
.+++..+|++++..|++|.+|+..++.++..|+++++.+ .+++..+++.|+++++|++.++|++++.|++.+.
T Consensus 154 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~ 227 (499)
T PLN03051 154 HMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGA 227 (499)
T ss_pred hcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCc
Confidence 667888999999999999999877788899999999987 4789999999999999999999999999987653
No 121
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=2.3e-24 Score=201.81 Aligned_cols=252 Identities=22% Similarity=0.206 Sum_probs=208.4
Q ss_pred cCCCCC-CCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhh
Q 046637 7 CSANYV-PLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVP 85 (301)
Q Consensus 7 ~~~~~~-~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~ 85 (301)
...+.+ ..++.+.|...+...|++.++++.+..+||+|+..+++++|+.|.+.|+++++.|+++.+.+++++++++|++
T Consensus 219 ~~~~~~~~~~i~~~f~~~a~~~p~~~a~~~~~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~il 298 (642)
T COG1020 219 LAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVL 298 (642)
T ss_pred cccCCCccchHHHHHHHHHHhCCCceeEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHH
Confidence 333433 4679999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred hccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHH
Q 046637 86 MAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYE 165 (301)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 165 (301)
+.|+.++|++|..+.+++..++++.+++.+++......... .++. +.++.... .
T Consensus 299 kaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~--------------~ 352 (642)
T COG1020 299 KAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV-----------GLPG-LALDDALS--------------E 352 (642)
T ss_pred hcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccc-----------cCCc-cccccccc--------------c
Confidence 99999999999999999999999999999999833221100 0111 11111100 0
Q ss_pred HHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHH
Q 046637 166 SLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAV 245 (301)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~ 245 (301)
.....+......+++.++++|||||||.||||+.+|.++..........+....+|+++...++.+......++.+
T Consensus 353 ----~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~ 428 (642)
T COG1020 353 ----IPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGA 428 (642)
T ss_pred ----CCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHH
Confidence 0000011123456899999999999999999999999999877777777888999999999999777787788999
Q ss_pred HHhCCeEEeeC---CCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 246 AAQGGTNVCQR---TVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 246 l~~g~~~v~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
+..|+++++.+ ..++..+.+.+.++++|++..+|.++..++..
T Consensus 429 l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~ 474 (642)
T COG1020 429 LLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLA 474 (642)
T ss_pred HhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhc
Confidence 99999999986 36899999999999999999999999999976
No 122
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]
Probab=99.89 E-value=7.4e-21 Score=174.14 Aligned_cols=274 Identities=16% Similarity=0.165 Sum_probs=218.7
Q ss_pred CCHHHHHHHHhhhcCCccEEEECC------eeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 14 LTPISFLERSAVVYRDRPSVVYGD------VQYTWKETHQRCVKLASGLAHL-GISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
.++.|+|+..++.+||.+|+...+ .++||++|..++++++..|+.. -+++||.|+++.++++|++++++||+.
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly 849 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY 849 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence 678899999999999999999843 6899999999999999999977 589999999999999999999999999
Q ss_pred ccceeeecCCCC------CHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCC
Q 046637 87 AGAVLCTLNTRH------DSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSG 160 (301)
Q Consensus 87 ~G~~~v~l~~~~------~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 160 (301)
+|.+++|+.|.- ..+.+..+++.++++.|+++.+....++..-.........++.++..++..+
T Consensus 850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~---------- 919 (1363)
T KOG3628|consen 850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE---------- 919 (1363)
T ss_pred cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch----------
Confidence 999999998864 3467889999999999999987665544322222211114566666665432
Q ss_pred CccHHHHHhh---ccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhh
Q 046637 161 NLEYESLLAI---GKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCN 237 (301)
Q Consensus 161 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~ 237 (301)
++....+. ......+.....+.+|++-+.--++|.--++.+||.++++.+......+.+.+..-++.+.+.+-+.
T Consensus 920 --t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGl 997 (1363)
T KOG3628|consen 920 --TIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGL 997 (1363)
T ss_pred --hhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccch
Confidence 11111111 1111222235567889999988899999999999999999999999999999988888888888888
Q ss_pred hhH-HHHHHHHhCCeEEeeC----CCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCccccccCC
Q 046637 238 GWC-LTWAVAAQGGTNVCQR----TVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVFENRFRGR 299 (301)
Q Consensus 238 g~~-~~~~~l~~g~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~~ 299 (301)
|+. +++..++.|.+.++.+ .-+|..|+..|+++|+.-++.+=..+....+.......+++.+
T Consensus 998 gf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~ 1064 (1363)
T KOG3628|consen 998 GFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKR 1064 (1363)
T ss_pred hHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhh
Confidence 877 4788899999888776 3589999999999999999999999999988777666666543
No 123
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=99.66 E-value=7.5e-16 Score=134.73 Aligned_cols=105 Identities=20% Similarity=0.175 Sum_probs=90.4
Q ss_pred CCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCC--CCEEEEeccchhhhhhHH-HHHHHHhCCeEEeeCCCC
Q 046637 183 CDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGL--MPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQRTVN 259 (301)
Q Consensus 183 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~--~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~~~~ 259 (301)
+..++++|||||||.||||++||.++..++......+++.. .+++++.+|++|.+|+.+ ++.++..|+++++.+.++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~ 174 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP 174 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence 55789999999999999999999999988877777776643 368999999999999764 677888999999988899
Q ss_pred HHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 260 AKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 260 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+..+++.++.+ |+++++|++++.|.+.+
T Consensus 175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~ 202 (386)
T TIGR02372 175 ASGIMRHARPG--DLIVGTPFIWEQLADLD 202 (386)
T ss_pred hHHHHHhhccC--CEEEECcHHHHHHHhhC
Confidence 99999888754 89999999999998753
No 124
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.58 E-value=2.4e-14 Score=124.92 Aligned_cols=109 Identities=18% Similarity=0.157 Sum_probs=91.9
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee---C
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ---R 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~---~ 256 (301)
..++++++++|||||||.||||+++|.++.......... +...++++..+|++|.+|+...+.++..|++.++. .
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~--~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~ 109 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR--LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSA 109 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc--cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCC
Confidence 456899999999999999999999999998877665443 34567889999999999988888899999998873 4
Q ss_pred CCCHHHHHHHHHhcC--cceecCChHHHHHHHcCCC
Q 046637 257 TVNAKEIFDNITRHK--VTHFGGAPTVLNMIANAPP 290 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~~~ 290 (301)
.+++..+++.+++++ .++...+|..+..++..+.
T Consensus 110 ~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~ 145 (358)
T PRK07824 110 GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA 145 (358)
T ss_pred CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc
Confidence 689999999999998 5677789999888877654
No 125
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.51 E-value=1.1e-13 Score=130.53 Aligned_cols=255 Identities=15% Similarity=0.067 Sum_probs=168.7
Q ss_pred CHHHHHHHHhhhcCCccEEEECC--------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhh
Q 046637 15 TPISFLERSAVVYRDRPSVVYGD--------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPM 86 (301)
Q Consensus 15 ~~~~~l~~~~~~~~~~~al~~~~--------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 86 (301)
.+.+.+.+.+.++|.+++..+.. ..+||++.....+.+++.|...|..+|+.|++++..+.++++..++.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~ 116 (1032)
T KOG1178|consen 37 TLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLA 116 (1032)
T ss_pred chhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhh
Confidence 44557888899999998887621 5899999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCCCCC----HHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 87 AGAVLCTLNTRHD----SAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 87 ~G~~~v~l~~~~~----~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
.|..+++++|.++ .+++..+.... .-........+.-......+ ..++.-+ + .+..
T Consensus 117 ~g~~~~~idp~~~~~e~~~~~~~ia~~~----~s~~~~i~~~l~i~~~~~~~---~~~~~sv-~------------~~~~ 176 (1032)
T KOG1178|consen 117 AGLTFLPIDPSWPNSELAGYLMRIAHFL----TSVELEIVRRLNIIDILLNS---LFPKLSV-E------------TIAD 176 (1032)
T ss_pred cceEEEEecCCCcccccchHHHhhhhhh----eeccceehhhhhhHHHHhhc---cccccch-h------------hccc
Confidence 9999999999999 23222222111 11101111110000000000 0000000 0 0001
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEecc-c-hhhhhhH
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVP-M-FHCNGWC 240 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p-~-~h~~g~~ 240 (301)
.|..+..... .........|..+++.||||+||.||+|.-+|..+..........+.....++. ...+ . +|..-..
T Consensus 177 ~f~~~~~~~~-~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~-~~~~~~~~~d~i~~ 254 (1032)
T KOG1178|consen 177 SFQMVLHNED-TREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRF-TFKTSVYFDDTIQK 254 (1032)
T ss_pred hhhhhhccCC-CcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchh-hhhheeecccchHH
Confidence 1111111111 122234667789999999999999999999999998877776666766666664 3222 2 3333333
Q ss_pred HHHHHHHhCCeEEeeCC---CCHHHHHHHHHhcCcceecCChHHHHHHHcCCCC
Q 046637 241 LTWAVAAQGGTNVCQRT---VNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPV 291 (301)
Q Consensus 241 ~~~~~l~~g~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 291 (301)
.....++.|..+..+.. -++..+.+.+++++++..+.+|++.+.++.....
T Consensus 255 ~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~ 308 (1032)
T KOG1178|consen 255 FIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTT 308 (1032)
T ss_pred HHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCc
Confidence 34445666666665542 2479999999999999999999998888765544
No 126
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=99.36 E-value=3.8e-12 Score=113.53 Aligned_cols=110 Identities=13% Similarity=-0.045 Sum_probs=87.0
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHH---HHHhhCCCCCEEEEeccchhh-hhhHHHHHHHHhCCeEEee
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAA---ALFNEMGLMPTYLWCVPMFHC-NGWCLTWAVAAQGGTNVCQ 255 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~---~~~~~~~~~~~~l~~~p~~h~-~g~~~~~~~l~~g~~~v~~ 255 (301)
.+.++++.+++||||||.||++.++|.++..+.... ...+++.++|++++..+..+. .++...+.+...|++++..
T Consensus 72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 151 (422)
T TIGR02155 72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI 151 (422)
T ss_pred CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence 355678899999999999999999999987654433 233577889998887665433 3333456678889999888
Q ss_pred CCCCHHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 256 RTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 256 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
+..++..+++.|++++||+++++|+++..|++..
T Consensus 152 ~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~ 185 (422)
T TIGR02155 152 SGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEEL 185 (422)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHH
Confidence 7778899999999999999999999999988653
No 127
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=99.12 E-value=4.9e-10 Score=100.41 Aligned_cols=107 Identities=17% Similarity=0.036 Sum_probs=82.8
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEee
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQ 255 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~ 255 (301)
.+.++++.+.+||||||.||++.+||.++.......... .++.++|+++...|..+..|.. ..+.+...|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 345678899999999999999999999987665544333 3788899999998887765543 345667778876543
Q ss_pred CCCCHHHHHHHHHhcCcceecCChHHHHHHHcC
Q 046637 256 RTVNAKEIFDNITRHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 256 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 288 (301)
.. ....++.|+++++|.+..+|+.+..|.+.
T Consensus 163 ~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~ 193 (445)
T TIGR03335 163 GK--CTFPIRIIESYRPTGIVASVFKLLRLARR 193 (445)
T ss_pred Cc--hhHHHHHHHHhCCCEEEECHHHHHHHHHH
Confidence 32 35678999999999999999998877653
No 128
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]
Probab=99.05 E-value=1.6e-09 Score=101.06 Aligned_cols=251 Identities=15% Similarity=0.062 Sum_probs=175.5
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECC-----eeeeHHHHHHHHHHHHH-HHHhcCCCCCCEEEEEcCCC--HHHHHHHHHh
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGD-----VQYTWKETHQRCVKLAS-GLAHLGISPGDVVAALAPNV--PAMYELHFGV 84 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~-----~~~Ty~el~~~~~~la~-~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~ 84 (301)
...+...++.....++..+|.++-+ ..+||..+..++.++|+ .|.+.|+.++|+|.++...+ .++++..++|
T Consensus 93 ~~d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc 172 (1363)
T KOG3628|consen 93 LTDIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGC 172 (1363)
T ss_pred hcchHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccc
Confidence 3445667777777788888988744 58999999999999999 67788999999999987765 6899999999
Q ss_pred hhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccH
Q 046637 85 PMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEY 164 (301)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 164 (301)
...|.+++|+.+..+.+++..+++....+++++............ .+ .++.+.+--.... ...+...+
T Consensus 173 ~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~--~~---~s~~k~v~~w~t~-------~~k~~~~~ 240 (1363)
T KOG3628|consen 173 FLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDN--SP---VSLAKAVAWWKTN-------DFKGNYTK 240 (1363)
T ss_pred cccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhcc--Cc---ccHHHHHHhhhcc-------cccceeeh
Confidence 999999999999999999999999999999988765443322211 00 0010000000000 00011111
Q ss_pred HHHHhhccccccCCCCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH--------------------HhhCCCC
Q 046637 165 ESLLAIGKLREVRRPKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL--------------------FNEMGLM 224 (301)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~--------------------~~~~~~~ 224 (301)
+.. ..+..... ..+|-||.+++|.--|++++|+ ++.+...... .++....
T Consensus 241 ~k~--------~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~ 310 (1363)
T KOG3628|consen 241 DKI--------KKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSE 310 (1363)
T ss_pred hhc--------cCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcc
Confidence 100 01112222 7899999999999999999998 5554332221 1123445
Q ss_pred CEEEEeccchhhhhhHH-HHHHHHhCCeEEeeCC---CCHHHHHHHHHhcCcceecCChHHHHHH
Q 046637 225 PTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQRT---VNAKEIFDNITRHKVTHFGGAPTVLNMI 285 (301)
Q Consensus 225 ~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l 285 (301)
++++...-..-..|+.. ++.+++.|.+.+.+++ +.|..+.+.+.++|++++..--..+...
T Consensus 311 ~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~ 375 (1363)
T KOG3628|consen 311 DVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQP 375 (1363)
T ss_pred cceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcc
Confidence 66777776777778775 7889999999998885 6788999999999999987754444433
No 129
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=98.50 E-value=1.5e-06 Score=75.64 Aligned_cols=114 Identities=14% Similarity=0.058 Sum_probs=85.8
Q ss_pred CCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccc-hhhhhhHHHHHHHHhCCeEEe
Q 046637 179 PKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPM-FHCNGWCLTWAVAAQGGTNVC 254 (301)
Q Consensus 179 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~-~h~~g~~~~~~~l~~g~~~v~ 254 (301)
....++...|--||||||+|+-+.+++..+..........+ +...+|++..+.-. .+..|+..-+.+-..|++++-
T Consensus 86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip 165 (438)
T COG1541 86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP 165 (438)
T ss_pred cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence 35556677788999999999999999999877666555544 56677876555442 223344444556667888777
Q ss_pred eCCCCHHHHHHHHHhcCcceecCChHHHHHHHcCCCCc
Q 046637 255 QRTVNAKEIFDNITRHKVTHFGGAPTVLNMIANAPPVF 292 (301)
Q Consensus 255 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 292 (301)
...-+.+.-++.++.+++|++.++|+.+..|.+.....
T Consensus 166 ~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~ 203 (438)
T COG1541 166 ISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEE 203 (438)
T ss_pred cCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHc
Confidence 76668899999999999999999999999998765544
No 130
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=96.66 E-value=0.022 Score=50.23 Aligned_cols=93 Identities=20% Similarity=0.180 Sum_probs=76.5
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEE
Q 046637 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA--MYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIF 116 (301)
Q Consensus 39 ~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (301)
-+|+.+....+..+|+.|...|..+||+|.....-+.. -.-..+|+.++|+.++|+.+. .-+.-..++++.++.++.
T Consensus 109 ~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI~ 187 (438)
T COG1541 109 GYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVIA 187 (438)
T ss_pred ecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEEE
Confidence 58999999999999999999999999998887653221 256788899999999999884 556777899999999999
Q ss_pred EcCCchhhHHHHHHHh
Q 046637 117 VDYQLLPIAQGAFEIL 132 (301)
Q Consensus 117 ~~~~~~~~~~~~~~~~ 132 (301)
+.......+.+.....
T Consensus 188 ~tps~~l~lae~~~~~ 203 (438)
T COG1541 188 ATPSYLLYLAEEAEEE 203 (438)
T ss_pred EChHHHHHHHHHHHHc
Confidence 9988776666655554
No 131
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=96.53 E-value=0.03 Score=49.98 Aligned_cols=100 Identities=11% Similarity=0.031 Sum_probs=62.1
Q ss_pred ceEEEeccCCCCCCCeeeechHHHHHHHHH-HHHHh--hCCCCCEEEEeccchhhhhhHHHHHHHHhCCe-EEeeC-CCC
Q 046637 185 PIALNYTSGTTSSPKGVICSHRGAYLNSLA-AALFN--EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGT-NVCQR-TVN 259 (301)
Q Consensus 185 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~--~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~-~v~~~-~~~ 259 (301)
-..+..||||||.|=.+..+.......... +.... +...++++..... ..+ ..+.++.+... +-... ..+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~---~~~--~ly~~~~~~~~~~~~~~l~~~ 175 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLR---ADN--NLYQSVNNRWISLDFFDLLAP 175 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEc---cCh--hHHHHHHhccceeeecCCCcC
Confidence 456778999999999999999876433222 22221 3344455443321 111 12222322221 22222 246
Q ss_pred HHHHHHHHHhcCcceecCChHHHHHHHcCC
Q 046637 260 AKEIFDNITRHKVTHFGGAPTVLNMIANAP 289 (301)
Q Consensus 260 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (301)
.+..++.|++++|+++.+.|+.+..|.+..
T Consensus 176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~ 205 (430)
T TIGR02304 176 FQAHIKRLNQRKPSIIVAPPSVLRALALEV 205 (430)
T ss_pred HHHHHHHHHHhCCCEEEEcHHHHHHHHHHH
Confidence 789999999999999999999999998753
No 132
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=93.51 E-value=1.3 Score=40.01 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=61.6
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEE
Q 046637 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA--MYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIF 116 (301)
Q Consensus 39 ~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (301)
.+|.+++...+...+..+...|+.+||++.+..+.+.. .....+++...|+.+++... .+....+++..++.+++
T Consensus 105 ~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l~ 181 (445)
T TIGR03335 105 FLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGIV 181 (445)
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEEE
Confidence 58999999998888988888999999999988765542 33456778899988776543 24557788999999887
Q ss_pred EcCCc
Q 046637 117 VDYQL 121 (301)
Q Consensus 117 ~~~~~ 121 (301)
.....
T Consensus 182 ~~ps~ 186 (445)
T TIGR03335 182 ASVFK 186 (445)
T ss_pred ECHHH
Confidence 75543
No 133
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=93.17 E-value=0.92 Score=40.57 Aligned_cols=88 Identities=16% Similarity=0.201 Sum_probs=67.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH--HHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEE
Q 046637 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP--AMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIF 116 (301)
Q Consensus 39 ~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (301)
.+|..++......++..+...|+++||++....+.+. ......++....|+.++++.+.. .+.+...|+..++.+++
T Consensus 94 ~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~ 172 (422)
T TIGR02155 94 GYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIM 172 (422)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEE
Confidence 4788888877777888888889999999887655432 22334567888999999887654 57788999999999999
Q ss_pred EcCCchhhHHH
Q 046637 117 VDYQLLPIAQG 127 (301)
Q Consensus 117 ~~~~~~~~~~~ 127 (301)
........+.+
T Consensus 173 ~~Ps~l~~L~~ 183 (422)
T TIGR02155 173 VTPSYMLNLLE 183 (422)
T ss_pred EcHHHHHHHHH
Confidence 98776655443
No 134
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=92.20 E-value=1.3 Score=38.72 Aligned_cols=109 Identities=12% Similarity=0.082 Sum_probs=62.2
Q ss_pred CCCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh----CCCCC-EEEEeccchhh-hhhHH----HHHHHHh
Q 046637 179 PKDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE----MGLMP-TYLWCVPMFHC-NGWCL----TWAVAAQ 248 (301)
Q Consensus 179 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~~~~~-~~l~~~p~~h~-~g~~~----~~~~l~~ 248 (301)
....+.+..++-||||||.|--+.+.+.++..+.......+. ..... .++...|-... ..+.. .+..+..
T Consensus 85 S~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~ 164 (365)
T PF04443_consen 85 SVPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFF 164 (365)
T ss_pred ecChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhccc
Confidence 355667788899999999987777777766655544443332 22222 23333444222 11221 1222333
Q ss_pred CCeEEeeC--CCCHHHHHHHHH----hcCcceecCChHHHHHHHcC
Q 046637 249 GGTNVCQR--TVNAKEIFDNIT----RHKVTHFGGAPTVLNMIANA 288 (301)
Q Consensus 249 g~~~v~~~--~~~~~~~~~~i~----~~~~t~~~~~P~~~~~l~~~ 288 (301)
+.. .+.. .++.+.+++.+. +.++..++..|.++-.++..
T Consensus 165 ~~~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~ 209 (365)
T PF04443_consen 165 GSR-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDE 209 (365)
T ss_pred Cce-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHH
Confidence 444 3333 467777776664 45688888888877766643
No 135
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=89.93 E-value=4.9 Score=35.55 Aligned_cols=89 Identities=9% Similarity=-0.081 Sum_probs=66.8
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
..++.++++. -....+|+..+...+......+ +++.++++....|-.- .-+...++++..|+..+.++
T Consensus 7 ~~pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~-~~~~~~~A~~~~G~~~v~l~ 77 (417)
T PF00501_consen 7 RYPDRIALID--------DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSI-EFVVAFLACLRAGAIPVPLD 77 (417)
T ss_dssp HSTTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSH-HHHHHHHHHHHTT-EEEEEE
T ss_pred hCCCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccc-eeeeeecccccccccccccc
Confidence 3466777766 3457899999988777665544 6678898888777642 33445788888999999884
Q ss_pred -CCCHHHHHHHHHhcCcceecC
Q 046637 257 -TVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~ 277 (301)
......+.+.+++.+++.+++
T Consensus 78 ~~~~~~~~~~~l~~~~~~~ii~ 99 (417)
T PF00501_consen 78 PSLSEDELRHILRQSGPKVIIT 99 (417)
T ss_dssp TTSSHHHHHHHHHHHTESEEEE
T ss_pred cccccccccccccccceeEEEE
Confidence 678899999999999999996
No 136
>TIGR03089 conserved hypothetical protein TIGR03089. This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=88.78 E-value=3.4 Score=33.50 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=53.2
Q ss_pred CccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH--HHHHHHHHhhhccceeeecCCCCCHHHHHHH
Q 046637 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP--AMYELHFGVPMAGAVLCTLNTRHDSAMVSVL 106 (301)
Q Consensus 29 ~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 106 (301)
+.+|++....-.|...+.... ...|+.++|++. ..|-.- .+...+++++..|+..+.+ ++++++++-+.
T Consensus 150 ~D~a~l~yTsg~~~~~~~~~~-------~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~ 220 (227)
T TIGR03089 150 TAPALVAGGGEWTGAELVAAA-------RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQI 220 (227)
T ss_pred CcceeeeccccccHHHHHHHH-------hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHH
Confidence 455655433223444433322 566899999999 877643 3445789999999988887 69999999999
Q ss_pred HHhcCc
Q 046637 107 LRHSEA 112 (301)
Q Consensus 107 l~~~~~ 112 (301)
+++.++
T Consensus 221 i~~~~v 226 (227)
T TIGR03089 221 AETERV 226 (227)
T ss_pred HHhhcC
Confidence 988875
No 137
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=88.36 E-value=7.7 Score=32.58 Aligned_cols=91 Identities=21% Similarity=0.178 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCC----CHHHHHHHHHhcCceEEEEcCCch
Q 046637 47 QRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH----DSAMVSVLLRHSEAKIIFVDYQLL 122 (301)
Q Consensus 47 ~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~----~~~~l~~~l~~~~~~~vi~~~~~~ 122 (301)
-++..||..|++.| ..|.+++.......... +...|..+..++-.. ..+++..+++..+++++|+|.-..
T Consensus 18 ~Rcl~LA~~l~~~g----~~v~f~~~~~~~~~~~~--i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~ 91 (279)
T TIGR03590 18 MRCLTLARALHAQG----AEVAFACKPLPGDLIDL--LLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGL 91 (279)
T ss_pred HHHHHHHHHHHHCC----CEEEEEeCCCCHHHHHH--HHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCC
Confidence 46788999997654 46777777765554333 357777766664432 345788999999999999997432
Q ss_pred -hhHHHHHHHhccccCCCCceEEccCCC
Q 046637 123 -PIAQGAFEILSKTSAKLPLLVLVPECG 149 (301)
Q Consensus 123 -~~~~~~~~~~~~~~~~~~~i~~~~~~~ 149 (301)
......... ...+++++++..
T Consensus 92 ~~~~~~~~k~------~~~~l~~iDD~~ 113 (279)
T TIGR03590 92 DADWEKLIKE------FGRKILVIDDLA 113 (279)
T ss_pred CHHHHHHHHH------hCCeEEEEecCC
Confidence 222222221 345667777653
No 138
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=88.00 E-value=5.3 Score=36.44 Aligned_cols=84 Identities=18% Similarity=0.131 Sum_probs=62.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH--HHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP--AMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKII 115 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (301)
-.+|++.+...+..+.. ..++++++++....+-.- .+...+++++..|+.+++. +..+.+.+...+++.++.++
T Consensus 184 v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~ 259 (513)
T PRK07656 184 AMLTHRQLLSNAADWAE---YLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL-PVFDPDEVFRLIETERITVL 259 (513)
T ss_pred EEEecHHHHHHHHHHHH---hhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec-CcCCHHHHHHHHHHhCCeEE
Confidence 36899988776655433 347889999888777533 3345578889999887775 56788999999999999998
Q ss_pred EEcCCchhhH
Q 046637 116 FVDYQLLPIA 125 (301)
Q Consensus 116 i~~~~~~~~~ 125 (301)
+........+
T Consensus 260 ~~~p~~~~~l 269 (513)
T PRK07656 260 PGPPTMYNSL 269 (513)
T ss_pred echHHHHHHH
Confidence 8876555443
No 139
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=86.99 E-value=4.2 Score=37.64 Aligned_cols=87 Identities=14% Similarity=-0.094 Sum_probs=71.2
Q ss_pred eeeechHHHHHHHHHHHHHhh-----CCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-CCCCHHHHHHHHHhcCcc
Q 046637 200 GVICSHRGAYLNSLAAALFNE-----MGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVT 273 (301)
Q Consensus 200 ~v~~s~~~l~~~~~~~~~~~~-----~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t 273 (301)
|..+|+..+...+...+..+. .+.+|++...+|-+--+.. ..+++++.|+.+... +.+++.++...++..+++
T Consensus 43 g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~-~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~k 121 (537)
T KOG1176|consen 43 GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVE-LALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPK 121 (537)
T ss_pred CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHH-HHHHHHHcCccccccCcccCHHHHHHHHHhcCCe
Confidence 899999999988888777664 6789999999997554332 357788888888766 478999999999999999
Q ss_pred eecCChHHHHHHHc
Q 046637 274 HFGGAPTVLNMIAN 287 (301)
Q Consensus 274 ~~~~~P~~~~~l~~ 287 (301)
.+++....+..+.+
T Consensus 122 iif~d~~~~~~i~~ 135 (537)
T KOG1176|consen 122 LIFVDEDFYDKISE 135 (537)
T ss_pred EEEEcCchHHHHHH
Confidence 99998888877744
No 140
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=86.76 E-value=5.6 Score=36.31 Aligned_cols=83 Identities=16% Similarity=0.199 Sum_probs=62.0
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEE
Q 046637 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA-MYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFV 117 (301)
Q Consensus 39 ~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 117 (301)
.+|++.+...+..... ..|++++|++....+.... .+...++++..|+..+..+.. +.+.+...+++.++..+++
T Consensus 186 ~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~-~~~~~~~~l~~~~~t~l~~ 261 (521)
T PRK06187 186 VLSHRNLFLHSLAVCA---WLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRF-DPENLLDLIETERVTFFFA 261 (521)
T ss_pred EeehHHHHHHHHHHHH---hhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCC-CHHHHHHHHHHhCCeEEEc
Confidence 6799998876666555 4588999998888775432 233445578889888777664 8899999999999999998
Q ss_pred cCCchhhH
Q 046637 118 DYQLLPIA 125 (301)
Q Consensus 118 ~~~~~~~~ 125 (301)
.......+
T Consensus 262 ~p~~~~~l 269 (521)
T PRK06187 262 VPTIWQML 269 (521)
T ss_pred hHHHHHHH
Confidence 76655443
No 141
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=86.22 E-value=18 Score=33.44 Aligned_cols=98 Identities=7% Similarity=0.007 Sum_probs=66.8
Q ss_pred cCCccEEEEC---------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH--HHHHHHHHhhhccceeeecC
Q 046637 27 YRDRPSVVYG---------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP--AMYELHFGVPMAGAVLCTLN 95 (301)
Q Consensus 27 ~~~~~al~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~ 95 (301)
.++.++++.. +-.+|++.+...+.... ...++.++|++....|-.- .+....+..+..|+..+...
T Consensus 181 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~ 257 (539)
T PRK06334 181 DPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACL---KFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAY 257 (539)
T ss_pred CcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHH---HhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEec
Confidence 4566776652 14689988876654443 3457888998887776422 22333566677887776665
Q ss_pred CCCCHHHHHHHHHhcCceEEEEcCCchhhHHH
Q 046637 96 TRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQG 127 (301)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 127 (301)
.....+.+...+++.++.++.........+.+
T Consensus 258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 289 (539)
T PRK06334 258 NPLYPKKIVEMIDEAKVTFLGSTPVFFDYILK 289 (539)
T ss_pred CCCCHHHHHHHHHHhCCcEEEecHHHHHHHHH
Confidence 56788999999999999999887766655433
No 142
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=85.36 E-value=13 Score=33.72 Aligned_cols=93 Identities=8% Similarity=0.015 Sum_probs=70.0
Q ss_pred cCCccEEEEC---------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC--CHHHHHHHHHhhhccceeeecC
Q 046637 27 YRDRPSVVYG---------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN--VPAMYELHFGVPMAGAVLCTLN 95 (301)
Q Consensus 27 ~~~~~al~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~ 95 (301)
.||..+-+.. +..+|=-++.+.+..++.. .|+...+++++-.|- +.-.++..+|++..|+..|.-.
T Consensus 232 ~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r---~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~ 308 (596)
T KOG1177|consen 232 SPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGAR---AGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPA 308 (596)
T ss_pred CCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHH---hCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeC
Confidence 4566555541 2589999999988877654 366665455544332 3345788999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEEcCCch
Q 046637 96 TRHDSAMVSVLLRHSEAKIIFVDYQLL 122 (301)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (301)
|.+.+...-..+.+.+|..++......
T Consensus 309 ~~f~~k~alqai~~ekcT~l~gtPtM~ 335 (596)
T KOG1177|consen 309 PSFDPKDALQAISNEKCTTLYGTPTMF 335 (596)
T ss_pred CCCChHHHHHHHHhhceEEEecChHHH
Confidence 999999999999999999999876544
No 143
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=85.31 E-value=18 Score=30.69 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=48.3
Q ss_pred HHHHHHHHhcC-CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 50 VKLASGLAHLG-ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 50 ~~la~~L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
..+-....+.| ++||+ ..|=..++---+...+.|...|.-++.+=|..-+.+-..+|+..++.+++++.
T Consensus 47 ~~mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~ 116 (300)
T COG0031 47 LYMIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPG 116 (300)
T ss_pred HHHHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence 33333344455 89998 44444444445555566667788777777777778889999999999999997
No 144
>PRK08315 AMP-binding domain protein; Validated
Probab=85.24 E-value=8.1 Score=35.80 Aligned_cols=82 Identities=9% Similarity=0.080 Sum_probs=61.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC--CHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN--VPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKII 115 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (301)
-.+|++.+...+..+... .+++++|++....+- ...++..+++++..|+..+......++..+...+++.++.++
T Consensus 217 v~~s~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~ 293 (559)
T PRK08315 217 ATLTHRNILNNGYFIGEA---MKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTAL 293 (559)
T ss_pred EEeeHHHHHHHHHHHHHh---cCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEE
Confidence 368888887665554433 488999998887775 334455678888889888766667788899999999999998
Q ss_pred EEcCCch
Q 046637 116 FVDYQLL 122 (301)
Q Consensus 116 i~~~~~~ 122 (301)
+......
T Consensus 294 ~~~P~~~ 300 (559)
T PRK08315 294 YGVPTMF 300 (559)
T ss_pred ecchHHH
Confidence 8765543
No 145
>PLN03052 acetate--CoA ligase; Provisional
Probab=84.21 E-value=19 Score=34.99 Aligned_cols=99 Identities=11% Similarity=-0.026 Sum_probs=70.5
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-C
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-R 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~ 256 (301)
.++.+|++.-..+..|.+ ...+|...|...+...... .++.++|++...+|..- -.+...++++..|+..+.+ +
T Consensus 188 ~pd~~Ai~~~~e~~~~~~-~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~-e~via~LA~~~~Gav~vpi~p 265 (728)
T PLN03052 188 TDDSIAIIWRDEGSDDLP-VNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNV-HAVIIYLAIILAGCVVVSIAD 265 (728)
T ss_pred CCCCeEEEEECCCCCCCc-eEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH-HHHHHHHHHHHcCCEEEeeCC
Confidence 456666654332221222 3568999998777766554 46889999999988532 3334567888889888877 5
Q ss_pred CCCHHHHHHHHHhcCcceecCChHH
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAPTV 281 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P~~ 281 (301)
.+.++.+...+++.++..+++....
T Consensus 266 ~~~~~~l~~rl~~~~~k~lit~d~~ 290 (728)
T PLN03052 266 SFAPSEIATRLKISKAKAIFTQDVI 290 (728)
T ss_pred CCCHHHHHHHHHhcCceEEEEcCcc
Confidence 7889999999999999999887643
No 146
>PRK12583 acyl-CoA synthetase; Provisional
Probab=83.76 E-value=10 Score=35.07 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=60.3
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC--CHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN--VPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKII 115 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (301)
-.+|++.+...+..+... .|++++|++....+- ....+..+++++..|+.++........+.+...+++.++.++
T Consensus 219 v~~s~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l 295 (558)
T PRK12583 219 ATLSHHNILNNGYFVAES---LGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTAL 295 (558)
T ss_pred EEeeHHHHHHHHHHHHHH---hCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEE
Confidence 368999887666655443 478899998776654 234566678888889887755556788888999999999998
Q ss_pred EEcCCch
Q 046637 116 FVDYQLL 122 (301)
Q Consensus 116 i~~~~~~ 122 (301)
+......
T Consensus 296 ~~~P~~~ 302 (558)
T PRK12583 296 YGVPTMF 302 (558)
T ss_pred eccHHHH
Confidence 8766543
No 147
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=83.69 E-value=0.58 Score=43.21 Aligned_cols=32 Identities=25% Similarity=0.122 Sum_probs=26.6
Q ss_pred CCCCCCceEEEeccCCCCC-CCeeeechHHHHH
Q 046637 179 PKDECDPIALNYTSGTTSS-PKGVICSHRGAYL 210 (301)
Q Consensus 179 ~~~~~~~~~i~~TSGtTG~-pK~v~~s~~~l~~ 210 (301)
...++.+.+...||||||. ||-+.+|...+..
T Consensus 76 vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~ 108 (528)
T PF03321_consen 76 VLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE 108 (528)
T ss_dssp CTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred CCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence 4667789999999999999 9999999998755
No 148
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=83.02 E-value=19 Score=34.26 Aligned_cols=79 Identities=10% Similarity=-0.018 Sum_probs=61.9
Q ss_pred eeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-CCCCHHHHHHHHHhcCccee
Q 046637 200 GVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVTHF 275 (301)
Q Consensus 200 ~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~ 275 (301)
...+|...|...+..+...+ ++.++|++...+|..- -.+...++++..|+..+.. +.+.++.+...+++.+++.+
T Consensus 90 ~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~l 168 (647)
T PTZ00237 90 TIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTL-EPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLI 168 (647)
T ss_pred eEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEE
Confidence 36799999987777666544 7889999999888643 2233467888889887766 57899999999999999999
Q ss_pred cCCh
Q 046637 276 GGAP 279 (301)
Q Consensus 276 ~~~P 279 (301)
++..
T Consensus 169 i~~~ 172 (647)
T PTZ00237 169 ITTN 172 (647)
T ss_pred EEcc
Confidence 8764
No 149
>PLN02736 long-chain acyl-CoA synthetase
Probab=82.49 E-value=32 Score=32.82 Aligned_cols=85 Identities=12% Similarity=-0.108 Sum_probs=64.4
Q ss_pred eeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-CCCCHHHHHHHHHhcCcceec
Q 046637 201 VICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 276 (301)
..+|+..+...+...... .++.++|++...+|-.--+ ....++++..|+..+.+ +...++.+...++..++..++
T Consensus 77 ~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~-~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~ 155 (651)
T PLN02736 77 KWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEW-LIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIF 155 (651)
T ss_pred EEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEE
Confidence 457999988776665554 4688999988877753322 22357788889988866 467899999999999999999
Q ss_pred CChHHHHHHH
Q 046637 277 GAPTVLNMIA 286 (301)
Q Consensus 277 ~~P~~~~~l~ 286 (301)
+.+..+..+.
T Consensus 156 ~~~~~~~~~~ 165 (651)
T PLN02736 156 CVPQTLNTLL 165 (651)
T ss_pred ECHHHHHHHH
Confidence 9888776654
No 150
>PLN03102 acyl-activating enzyme; Provisional
Probab=82.16 E-value=19 Score=33.78 Aligned_cols=80 Identities=11% Similarity=-0.041 Sum_probs=61.7
Q ss_pred eechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceec
Q 046637 202 ICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 276 (301)
.+|...|...+......+ ++.++|++...+|-. ..+. ..++++..|+..+.+. ..+++.+...+++.+++.++
T Consensus 39 ~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~--~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii 116 (579)
T PLN03102 39 RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNT--PAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILF 116 (579)
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEE
Confidence 689999987777666544 688999998888842 2333 4677888888888774 67899999999999999999
Q ss_pred CChHHHH
Q 046637 277 GAPTVLN 283 (301)
Q Consensus 277 ~~P~~~~ 283 (301)
+.+....
T Consensus 117 ~~~~~~~ 123 (579)
T PLN03102 117 VDRSFEP 123 (579)
T ss_pred EChhhHH
Confidence 8765543
No 151
>PRK09274 peptide synthase; Provisional
Probab=82.05 E-value=19 Score=33.35 Aligned_cols=98 Identities=15% Similarity=-0.024 Sum_probs=67.0
Q ss_pred CCCCceEEEeccCCC-CCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 181 DECDPIALNYTSGTT-SSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
.++.++++....++. +..+...+|+..|...+......+ ++.++|++...++-.. .-....++++..|+..+.+.
T Consensus 19 ~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~-~~~~~~la~~~~G~~~v~l~ 97 (552)
T PRK09274 19 RPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSL-EFFALTFALFKAGAVPVLVD 97 (552)
T ss_pred CCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcH-HHHHHHHHHHHcCeEEEEcC
Confidence 445666554332222 223344789999987777665544 6788999988887543 22334678888899888775
Q ss_pred -CCCHHHHHHHHHhcCcceecCCh
Q 046637 257 -TVNAKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P 279 (301)
....+.+...+++.++..++..+
T Consensus 98 ~~~~~~~l~~~l~~~~~~~~i~~~ 121 (552)
T PRK09274 98 PGMGIKNLKQCLAEAQPDAFIGIP 121 (552)
T ss_pred CCccHHHHHHHHHhcCCCEEEecc
Confidence 56788888999999999888754
No 152
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=81.56 E-value=24 Score=33.33 Aligned_cols=97 Identities=11% Similarity=-0.063 Sum_probs=69.5
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ- 255 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~- 255 (301)
..++.++++.. ...+| ....+|+..|...+......+ ++.++|++...+|..- -.....++++..|+..+.+
T Consensus 69 ~~p~~~Al~~~-~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~v~i~ 144 (625)
T TIGR02188 69 ARPDKVAIIWE-GDEPG--EVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIP-EAAIAMLACARIGAIHSVVF 144 (625)
T ss_pred cCCCCeEEEEE-cCCCC--ceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHhCCEEeccC
Confidence 35567776643 21122 246799999987776665544 6789999999888543 2233467888889888876
Q ss_pred CCCCHHHHHHHHHhcCcceecCChH
Q 046637 256 RTVNAKEIFDNITRHKVTHFGGAPT 280 (301)
Q Consensus 256 ~~~~~~~~~~~i~~~~~t~~~~~P~ 280 (301)
+.+.+..+...++..++..+++...
T Consensus 145 ~~~~~~~l~~~l~~~~~~~li~~~~ 169 (625)
T TIGR02188 145 GGFSAEALADRINDAGAKLVITADE 169 (625)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 4788999999999999999987654
No 153
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=80.70 E-value=27 Score=33.13 Aligned_cols=96 Identities=11% Similarity=-0.069 Sum_probs=68.5
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-C
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-R 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~ 256 (301)
.++.+|++... . .......+|+..|...+......+ ++.++|++...+|-.- -.+...++++..|+..+.+ +
T Consensus 80 ~p~~~Al~~~~--~-~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~v~l~~ 155 (637)
T PRK00174 80 RGDKVAIIWEG--D-DPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIP-EAAVAMLACARIGAVHSVVFG 155 (637)
T ss_pred CCCCeEEEEEC--C-CCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCCEEEecCC
Confidence 46677766421 1 112356799999988777666554 6788999888877533 2233467888889888877 4
Q ss_pred CCCHHHHHHHHHhcCcceecCChH
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAPT 280 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P~ 280 (301)
.+.++.+...++..++..+++...
T Consensus 156 ~~~~~~l~~~l~~~~~~~li~~~~ 179 (637)
T PRK00174 156 GFSAEALADRIIDAGAKLVITADE 179 (637)
T ss_pred CCCHHHHHHHHHhcCCcEEEEcCc
Confidence 678899999999999999987654
No 154
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=80.25 E-value=23 Score=32.86 Aligned_cols=96 Identities=9% Similarity=-0.140 Sum_probs=67.4
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR- 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~- 256 (301)
.++.++++..- ++.++...+|+..+...+......+ ++.+++++...+|-...+ ....++++..|+..+...
T Consensus 37 ~p~~~A~~~~~---~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~-~~~~la~~~~G~~~vpl~~ 112 (547)
T PRK13295 37 CPDKTAVTAVR---LGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEF-TVLYLACSRIGAVLNPLMP 112 (547)
T ss_pred CCCceEEEecC---CCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHH-HHHHHHHHhcCcEEecccc
Confidence 34566665432 2334446789999987766655544 678899988888754433 334678888899888764
Q ss_pred CCCHHHHHHHHHhcCcceecCChH
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAPT 280 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P~ 280 (301)
...++.+...++..++..+++.+.
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~~ 136 (547)
T PRK13295 113 IFRERELSFMLKHAESKVLVVPKT 136 (547)
T ss_pred ccCHHHHHHHHHhcCceEEEEecc
Confidence 567888999999999999877553
No 155
>PRK08316 acyl-CoA synthetase; Validated
Probab=79.97 E-value=24 Score=32.27 Aligned_cols=85 Identities=11% Similarity=-0.125 Sum_probs=63.7
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceec
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 276 (301)
..+|+..+...+......+ ++.+++++....|-.- .-+...++++..|+..+... ...++.+...+++.++..++
T Consensus 35 ~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~-~~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii 113 (523)
T PRK08316 35 RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSD-AYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFL 113 (523)
T ss_pred ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEE
Confidence 5689999877766655443 5778898888776543 23345688888998888775 56788899999999999998
Q ss_pred CChHHHHHHH
Q 046637 277 GAPTVLNMIA 286 (301)
Q Consensus 277 ~~P~~~~~l~ 286 (301)
..+.....+.
T Consensus 114 ~~~~~~~~~~ 123 (523)
T PRK08316 114 VDPALAPTAE 123 (523)
T ss_pred EccchHHHHH
Confidence 8887766554
No 156
>PRK07788 acyl-CoA synthetase; Validated
Probab=79.88 E-value=18 Score=33.43 Aligned_cols=83 Identities=8% Similarity=-0.102 Sum_probs=63.4
Q ss_pred eechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecC
Q 046637 202 ICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 277 (301)
.+|+..+...+......+ ++.+++++...++-.- .-+...++++..|+..+.++ ...++.+...+++.+++.+++
T Consensus 74 ~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~-~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 152 (549)
T PRK07788 74 TLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHR-GFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVY 152 (549)
T ss_pred ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEE
Confidence 689999887766665544 5778999888776422 22334688899999999885 567889999999999999999
Q ss_pred ChHHHHHH
Q 046637 278 APTVLNMI 285 (301)
Q Consensus 278 ~P~~~~~l 285 (301)
.+.....+
T Consensus 153 ~~~~~~~~ 160 (549)
T PRK07788 153 DDEFTDLL 160 (549)
T ss_pred CchhHHHH
Confidence 88776655
No 157
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=79.66 E-value=31 Score=32.87 Aligned_cols=95 Identities=11% Similarity=-0.038 Sum_probs=68.1
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-C
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-R 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~ 256 (301)
.++.++++.... .| ....+|+..|...+......+ ++.++|++...+|..- -.....++++..|+..+.+ +
T Consensus 97 ~~~~~Al~~~~~--~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~v~~~lA~~~~Gav~v~l~~ 171 (655)
T PRK03584 97 RDDRPAIIFRGE--DG--PRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIP-ETVVAMLATASLGAIWSSCSP 171 (655)
T ss_pred CCCCeEEEEECC--CC--ceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCcEEEeeCC
Confidence 346666654321 22 246799999987776655544 6788999999888532 2334568888899988877 4
Q ss_pred CCCHHHHHHHHHhcCcceecCChH
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAPT 280 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P~ 280 (301)
.+.+..+...++..++..+++.+.
T Consensus 172 ~~~~~~l~~~l~~~~~~~li~~~~ 195 (655)
T PRK03584 172 DFGVQGVLDRFGQIEPKVLIAVDG 195 (655)
T ss_pred CCCHHHHHHHHHHcCCcEEEEccc
Confidence 678899999999999999887653
No 158
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=79.44 E-value=9.6 Score=34.64 Aligned_cols=63 Identities=14% Similarity=0.034 Sum_probs=47.1
Q ss_pred HHHHhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC----CCCHHHHHHHHHhcCcceecCChHH
Q 046637 215 AALFNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR----TVNAKEIFDNITRHKVTHFGGAPTV 281 (301)
Q Consensus 215 ~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P~~ 281 (301)
+....-.+++|+++.-.|-|+..-- ++ -..|..++-++ +.+++.+-+.+++++|..++++|++
T Consensus 170 l~~~~l~~pGd~v~vE~PtY~~~~~--~~--~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~ 236 (459)
T COG1167 170 LLLRLLLDPGDTVLVEDPTYPGALQ--AL--EALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTF 236 (459)
T ss_pred HHHHHhCCCCCEEEEcCCCcHHHHH--HH--HHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCC
Confidence 4444455799999999998874321 22 23477777665 5789999999999999999999974
No 159
>PRK07529 AMP-binding domain protein; Validated
Probab=79.18 E-value=25 Score=33.37 Aligned_cols=97 Identities=9% Similarity=0.029 Sum_probs=65.6
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
..++.++++....+.. ..+...+|+..|...+......+ ++.+++++...+|-.--+ +...++++..|..+.+-+
T Consensus 37 ~~p~~~Al~~~~~~~~-~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~-~~~~lA~~~~Gi~~pi~~ 114 (632)
T PRK07529 37 RHPDAPALSFLLDADP-LDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPET-HFALWGGEAAGIANPINP 114 (632)
T ss_pred HCCCCceEEeecccCC-CCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCEEEeCCC
Confidence 4556777765533211 22456799999987766655544 678999999988854322 334566777774322335
Q ss_pred CCCHHHHHHHHHhcCcceecCC
Q 046637 257 TVNAKEIFDNITRHKVTHFGGA 278 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~ 278 (301)
..+++.+...+++.++..+++.
T Consensus 115 ~~~~~~i~~~l~~~~~~~li~~ 136 (632)
T PRK07529 115 LLEPEQIAELLRAAGAKVLVTL 136 (632)
T ss_pred cCCHHHHHHHHHhcCCcEEEEe
Confidence 6789999999999999999875
No 160
>PRK06839 acyl-CoA synthetase; Validated
Probab=79.12 E-value=37 Score=30.78 Aligned_cols=86 Identities=12% Similarity=-0.091 Sum_probs=64.9
Q ss_pred eeeechHHHHHHHHHHHHHh----hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcce
Q 046637 200 GVICSHRGAYLNSLAAALFN----EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTH 274 (301)
Q Consensus 200 ~v~~s~~~l~~~~~~~~~~~----~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~ 274 (301)
+..+|+..+...+......+ ++.+++++...++-... .....++++..|+..+..+ ..++..+...+++.+++.
T Consensus 25 ~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~-~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (496)
T PRK06839 25 EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLE-YIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTV 103 (496)
T ss_pred CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHH-HHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceE
Confidence 46789999988777666544 56788988887775532 2334677788898888775 567889999999999999
Q ss_pred ecCChHHHHHHH
Q 046637 275 FGGAPTVLNMIA 286 (301)
Q Consensus 275 ~~~~P~~~~~l~ 286 (301)
+++.+.....+.
T Consensus 104 i~~~~~~~~~~~ 115 (496)
T PRK06839 104 LFVEKTFQNMAL 115 (496)
T ss_pred EEEcHHHHHHHH
Confidence 999888766554
No 161
>PLN02654 acetate-CoA ligase
Probab=78.15 E-value=37 Score=32.52 Aligned_cols=96 Identities=9% Similarity=-0.037 Sum_probs=68.4
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-C
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-R 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~ 256 (301)
.++.+|++ +...-.| ....+|+..|...+..+...+ +++++|++...+|..- --+...++++..|+..+.. +
T Consensus 102 ~~~~~Al~-~~~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~-e~v~a~lA~~~~Gav~vpv~~ 177 (666)
T PLN02654 102 NGDKIAIY-WEGNEPG--FDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLM-ELPIAMLACARIGAVHSVVFA 177 (666)
T ss_pred CCCCEEEE-EEcCCCC--ceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCCEEEecCC
Confidence 45666665 3211111 246799999988777666544 6889999999888633 2233467888889888876 5
Q ss_pred CCCHHHHHHHHHhcCcceecCChH
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAPT 280 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P~ 280 (301)
.+.++.+...++..++..+++...
T Consensus 178 ~~~~~~l~~~l~~~~~~~li~~~~ 201 (666)
T PLN02654 178 GFSAESLAQRIVDCKPKVVITCNA 201 (666)
T ss_pred CCCHHHHHHHHHhcCceEEEEcCc
Confidence 788999999999999999987654
No 162
>PLN02249 indole-3-acetic acid-amido synthetase
Probab=77.39 E-value=1.4 Score=41.32 Aligned_cols=30 Identities=13% Similarity=-0.027 Sum_probs=26.1
Q ss_pred CCCCCceEEEeccCCC-CCCCeeeechHHHH
Q 046637 180 KDECDPIALNYTSGTT-SSPKGVICSHRGAY 209 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~ 209 (301)
..++.+.+...||||| |.+|-+.+|...+-
T Consensus 97 L~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~ 127 (597)
T PLN02249 97 LSSHPITEFLTSSGTSAGERKLMPTIEEDID 127 (597)
T ss_pred eCCCchhhhcccCCCCCCceeEEeccHHHHH
Confidence 5567788999999999 89999999997764
No 163
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=77.08 E-value=47 Score=31.50 Aligned_cols=95 Identities=14% Similarity=-0.010 Sum_probs=67.8
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-C
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-R 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~ 256 (301)
.++.++++. -+..+|. .-.+|+..|...+......+ ++.++|++...+|..- -.+...++++..|+..+.. +
T Consensus 65 ~p~~~Al~~-~~~~~~~--~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~-e~v~~~lA~~~~Gav~vpl~~ 140 (628)
T TIGR02316 65 RGEQLALVT-VSSETGQ--ERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIA-EAVFAMLACARIGAIHSVVFG 140 (628)
T ss_pred CCCCeEEEE-EcCCCCc--eEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHHhCCEEEecCC
Confidence 456666654 3222232 35689999987776665544 7889999998888632 2334568888899888766 4
Q ss_pred CCCHHHHHHHHHhcCcceecCCh
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P 279 (301)
.+.+..+...++..++..+++..
T Consensus 141 ~~~~~~l~~~l~~~~~~~li~~~ 163 (628)
T TIGR02316 141 GFASHSLALRIDDATPKLIVSAD 163 (628)
T ss_pred CCCHHHHHHHHHhcCceEEEECC
Confidence 77889999999999999988754
No 164
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.88 E-value=10 Score=24.69 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=51.8
Q ss_pred eeeeHHHHHHHHHHHHH---HHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceE
Q 046637 38 VQYTWKETHQRCVKLAS---GLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKI 114 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~---~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (301)
...||+||.+.-..++. +|.+..++..|.++|+.=++... ..++.++.-.+.+++.+.++..++++
T Consensus 8 gi~t~keL~eE~~~Fv~~kA~l~k~~L~dDde~aIfnI~gT~S-----------y~V~Fl~~~~s~eev~~ele~mga~i 76 (88)
T COG4009 8 GIATYKELDEELKDFVRLKAHLAKVDLNDDDELAIFNIEGTSS-----------YYVVFLEEVESEEEVERELEDMGAEI 76 (88)
T ss_pred hheeHHhhhHHHHHHHHHHHHhcccccCCCCcEEEEEecCcee-----------EEEEEEeccCCHHHHHHHHHHhCchh
Confidence 35799999888877665 46667888999999987766432 35678888899999999999888754
No 165
>PLN02565 cysteine synthase
Probab=76.57 E-value=49 Score=28.51 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=60.8
Q ss_pred ccEEEECCeeeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHH
Q 046637 30 RPSVVYGDVQYTWKETHQRCVKLASGLAHLGI-SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLR 108 (301)
Q Consensus 30 ~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~ 108 (301)
++++..+...-|..==++-+..+-..+.+.|. .+|....+....+---....++|...|..++.+-|...+......++
T Consensus 31 ~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~ 110 (322)
T PLN02565 31 RIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILL 110 (322)
T ss_pred eEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHH
Confidence 56666665433332122334444444555664 78865445455555556666778889988887778888899999999
Q ss_pred hcCceEEEEcCC
Q 046637 109 HSEAKIIFVDYQ 120 (301)
Q Consensus 109 ~~~~~~vi~~~~ 120 (301)
..++++++++..
T Consensus 111 ~~GA~V~~~~~~ 122 (322)
T PLN02565 111 AFGAELVLTDPA 122 (322)
T ss_pred HcCCEEEEeCCC
Confidence 999999999864
No 166
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=76.52 E-value=28 Score=32.25 Aligned_cols=86 Identities=9% Similarity=-0.123 Sum_probs=65.8
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceec
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 276 (301)
..+|...+...+......+ ++.+++++....|-...+ +...++++..|+..+... ...+.++...+++.+++.++
T Consensus 45 ~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~ 123 (542)
T PRK06155 45 TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEF-LDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLV 123 (542)
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHH-HHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEE
Confidence 3689999887777666544 577889888877754433 334688888999888774 67889999999999999999
Q ss_pred CChHHHHHHHc
Q 046637 277 GAPTVLNMIAN 287 (301)
Q Consensus 277 ~~P~~~~~l~~ 287 (301)
+.+.....+.+
T Consensus 124 ~~~~~~~~~~~ 134 (542)
T PRK06155 124 VEAALLAALEA 134 (542)
T ss_pred EChhhHHHHHH
Confidence 88877666543
No 167
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=76.34 E-value=43 Score=32.00 Aligned_cols=92 Identities=11% Similarity=-0.011 Sum_probs=66.6
Q ss_pred CCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-CCC
Q 046637 183 CDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-RTV 258 (301)
Q Consensus 183 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~~~ 258 (301)
++++++.. + .+|. ...+|+..|...+..+...+ +++++|++...+|..- -.....++++..|+..+.. +.+
T Consensus 99 ~~~a~~~~-~-~~~~--~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~-e~~~~~lA~~~~Gav~vp~~~~~ 173 (652)
T TIGR01217 99 TEPALLYV-D-ETHE--PAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIP-QAVVAMLATASVGAIWSSCSPDF 173 (652)
T ss_pred CCeEEEEE-C-CCCC--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHHhCeEEEecCCCC
Confidence 45555443 2 2222 35789999988777666544 6889999999888643 2233467888889887776 478
Q ss_pred CHHHHHHHHHhcCcceecCCh
Q 046637 259 NAKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 259 ~~~~~~~~i~~~~~t~~~~~P 279 (301)
.++.+...+++.++..+++..
T Consensus 174 ~~~~l~~~l~~~~~k~li~~~ 194 (652)
T TIGR01217 174 GARGVLDRFQQIEPKLLFTVD 194 (652)
T ss_pred CHHHHHHHHHhcCCcEEEEcc
Confidence 899999999999999998754
No 168
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=75.84 E-value=36 Score=29.94 Aligned_cols=64 Identities=19% Similarity=0.153 Sum_probs=47.5
Q ss_pred HHhcC-CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 56 LAHLG-ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 56 L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
..+.| ++||....+....+---....++|...|..+..+-|...+.+-...++..++++++++.
T Consensus 101 a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~ 165 (368)
T PLN02556 101 AEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDP 165 (368)
T ss_pred HHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 33455 67885444445555666667777888898777777777778888999999999999974
No 169
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=75.74 E-value=44 Score=31.38 Aligned_cols=96 Identities=8% Similarity=-0.065 Sum_probs=68.2
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
..++.++++.- .-.+|+..+...+...... .++.+++++...++-... .+...++++..|+..+..+
T Consensus 49 ~~p~~~Ai~~~---------~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~-~v~~~lA~~~~G~~~v~l~ 118 (600)
T PRK08279 49 RHPDRPALLFE---------DQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPE-YLAAWLGLAKLGAVVALLN 118 (600)
T ss_pred hCCCCcEEEeC---------CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHH-HHHHHHHHHhcCcEEeecC
Confidence 34566666541 2468999998776665544 367788998888765432 2345688888898888775
Q ss_pred -CCCHHHHHHHHHhcCcceecCChHHHHHH
Q 046637 257 -TVNAKEIFDNITRHKVTHFGGAPTVLNMI 285 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 285 (301)
......+...+++.+++.+++.......+
T Consensus 119 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~ 148 (600)
T PRK08279 119 TQQRGAVLAHSLNLVDAKHLIVGEELVEAF 148 (600)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 56778889999999999998887666554
No 170
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=75.61 E-value=24 Score=32.54 Aligned_cols=84 Identities=11% Similarity=-0.092 Sum_probs=62.9
Q ss_pred eechHHHHHHHHHHHHHh----hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceec
Q 046637 202 ICSHRGAYLNSLAAALFN----EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~----~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 276 (301)
.+|+..+...+......+ ++..++++....+-. ...+...++++..|+..+... ...+..+...+++.+++.++
T Consensus 35 ~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 113 (546)
T PRK08314 35 AISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNS-PQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAI 113 (546)
T ss_pred eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCC-hHHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEE
Confidence 589999877666555433 677889988887743 233445788888999888775 56788999999999999998
Q ss_pred CChHHHHHHH
Q 046637 277 GAPTVLNMIA 286 (301)
Q Consensus 277 ~~P~~~~~l~ 286 (301)
+.+.....+.
T Consensus 114 ~~~~~~~~~~ 123 (546)
T PRK08314 114 VGSELAPKVA 123 (546)
T ss_pred EccchhhhHH
Confidence 8877665543
No 171
>PRK13388 acyl-CoA synthetase; Provisional
Probab=75.34 E-value=48 Score=30.70 Aligned_cols=84 Identities=12% Similarity=-0.117 Sum_probs=62.0
Q ss_pred eeechHHHHHHHHHHHHHh---hC-CCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCccee
Q 046637 201 VICSHRGAYLNSLAAALFN---EM-GLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHF 275 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~-~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~ 275 (301)
..+|+..+...+..+...+ +. .+++++...++-..- -....++++..|+..+.++ ....+.+...+++.++..+
T Consensus 25 ~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~-~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~ 103 (540)
T PRK13388 25 RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPE-MLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLL 103 (540)
T ss_pred ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcH-HHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEE
Confidence 4789999988777666554 55 577888887774332 2234677888899888774 5678899999999999999
Q ss_pred cCChHHHHHH
Q 046637 276 GGAPTVLNMI 285 (301)
Q Consensus 276 ~~~P~~~~~l 285 (301)
++.......+
T Consensus 104 i~~~~~~~~~ 113 (540)
T PRK13388 104 VTDAEHRPLL 113 (540)
T ss_pred EEChhhhHHH
Confidence 9877665544
No 172
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=75.22 E-value=24 Score=30.95 Aligned_cols=67 Identities=10% Similarity=-0.060 Sum_probs=52.0
Q ss_pred hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCChHHHHHHH
Q 046637 219 NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAPTVLNMIA 286 (301)
Q Consensus 219 ~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 286 (301)
.++..+|++....|-.- ..+...+.++..|+..+..+ ......+-..+++.+++.+...+.....+.
T Consensus 20 ~g~~~gd~v~l~~~n~~-~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~ 87 (408)
T TIGR01733 20 GGVGPGDRVAVLLERSA-ELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDSALASRLA 87 (408)
T ss_pred hCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcCchhhhcc
Confidence 45788999888888652 33345688888999988775 567888999999999999999887666553
No 173
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.20 E-value=23 Score=30.30 Aligned_cols=76 Identities=12% Similarity=0.156 Sum_probs=57.1
Q ss_pred HHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhc
Q 046637 55 GLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILS 133 (301)
Q Consensus 55 ~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~ 133 (301)
-|.+.|++||++|+|.+--+.-.+...+|. ..|.-++.++... ..-++.++..+++.++...+..+..+.+.....
T Consensus 173 pLk~~g~~pG~~vgI~GlGGLGh~aVq~AK-AMG~rV~vis~~~--~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~d 248 (360)
T KOG0023|consen 173 PLKRSGLGPGKWVGIVGLGGLGHMAVQYAK-AMGMRVTVISTSS--KKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTD 248 (360)
T ss_pred hhHHcCCCCCcEEEEecCcccchHHHHHHH-HhCcEEEEEeCCc--hhHHHHHHhcCcceeEEecCCHHHHHHHHHhhc
Confidence 377889999999999999998888788877 4577777776554 233467788899998888766666666655443
No 174
>PRK07514 malonyl-CoA synthase; Validated
Probab=75.00 E-value=30 Score=31.44 Aligned_cols=86 Identities=12% Similarity=-0.063 Sum_probs=64.0
Q ss_pred eeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCccee
Q 046637 200 GVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHF 275 (301)
Q Consensus 200 ~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~ 275 (301)
+..+|+..|...+......+ ++.+++++....+-.- --....++++..|+..+... ...+..+...+++.+++.+
T Consensus 26 ~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~-e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i 104 (504)
T PRK07514 26 GLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSP-EALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALV 104 (504)
T ss_pred CCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEE
Confidence 45789999877666655544 6788999888877542 22334678888898888775 5678899999999999999
Q ss_pred cCChHHHHHHH
Q 046637 276 GGAPTVLNMIA 286 (301)
Q Consensus 276 ~~~P~~~~~l~ 286 (301)
.+.+.....+.
T Consensus 105 i~~~~~~~~~~ 115 (504)
T PRK07514 105 VCDPANFAWLS 115 (504)
T ss_pred EEccchhHHHH
Confidence 88887765543
No 175
>PRK05850 acyl-CoA synthetase; Validated
Probab=74.97 E-value=62 Score=30.18 Aligned_cols=104 Identities=9% Similarity=-0.067 Sum_probs=69.6
Q ss_pred CCCCCceEEEeccCCCCCCC--eeeechHHHHHHHHHHHHHhh--CCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee
Q 046637 180 KDECDPIALNYTSGTTSSPK--GVICSHRGAYLNSLAAALFNE--MGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ 255 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK--~v~~s~~~l~~~~~~~~~~~~--~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~ 255 (301)
..++.++++.... .+.++ ...+|+..|...+......+. -.++|++...++-.- --+...++++..|+..+.+
T Consensus 13 ~~p~~~a~~~~~~--~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g~~gd~V~l~~~n~~-~~~~~~lA~~~~G~v~vpl 89 (578)
T PRK05850 13 LQPDDAAFTFIDY--EQDPAGVAETLTWSQLYRRTLNVAEELRRHGSTGDRAVILAPQGL-EYIVAFLGALQAGLIAVPL 89 (578)
T ss_pred cCCCceEEEEEcc--CCCCCCceeeecHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCcc-cHHHHHHHHHHcCceEEec
Confidence 4456666654321 11122 357899998776666555442 146788888877442 2233468889999998888
Q ss_pred CC----CCHHHHHHHHHhcCcceecCChHHHHHHH
Q 046637 256 RT----VNAKEIFDNITRHKVTHFGGAPTVLNMIA 286 (301)
Q Consensus 256 ~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 286 (301)
+. .....+...++..++..+++.+.....+.
T Consensus 90 ~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~ 124 (578)
T PRK05850 90 SVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVT 124 (578)
T ss_pred CCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHH
Confidence 53 35678999999999999999887766653
No 176
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=74.97 E-value=24 Score=32.18 Aligned_cols=83 Identities=12% Similarity=0.005 Sum_probs=61.8
Q ss_pred eechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecC
Q 046637 202 ICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 277 (301)
.+|+..+...+......+ ++..++++...++-.. .-....++++..|+..+..+ ...+..+...+++.+++.+++
T Consensus 25 ~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~-~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~ 103 (515)
T TIGR03098 25 TLTYAALSERVLALASGLRGLGLARGERVAIYLDKRL-ETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVT 103 (515)
T ss_pred eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEE
Confidence 689999887666655444 5678888888777533 23334677888898888765 678899999999999999988
Q ss_pred ChHHHHHH
Q 046637 278 APTVLNMI 285 (301)
Q Consensus 278 ~P~~~~~l 285 (301)
.+..+..+
T Consensus 104 ~~~~~~~~ 111 (515)
T TIGR03098 104 SSERLDLL 111 (515)
T ss_pred ccchhhhh
Confidence 77665544
No 177
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=74.82 E-value=14 Score=32.95 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=59.1
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH-HHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP-AMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIF 116 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~-~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (301)
-.+|++.+...+...... .+++++|++....+-.. ..+..+++++..|+..+..++. +.+...+++.++.++.
T Consensus 129 v~~s~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~~ 202 (436)
T TIGR01923 129 VPHTFRNHYASAVGSKEN---LGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF---NQLLEMIANERVTHIS 202 (436)
T ss_pred EEEehHHHHHHHHHHHhh---cCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH---HHHHHHHHHhCCeEEE
Confidence 368999988877766554 48899999887766532 2334567888899888777543 4888899999999988
Q ss_pred EcCCchhh
Q 046637 117 VDYQLLPI 124 (301)
Q Consensus 117 ~~~~~~~~ 124 (301)
........
T Consensus 203 ~~P~~l~~ 210 (436)
T TIGR01923 203 LVPTQLNR 210 (436)
T ss_pred eHHHHHHH
Confidence 86655443
No 178
>PRK05857 acyl-CoA synthetase; Validated
Probab=74.75 E-value=34 Score=31.67 Aligned_cols=94 Identities=12% Similarity=-0.115 Sum_probs=66.5
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
..++.++++.. .| ...+|+..+...+......+ ++.+++++...++... .-+...++++..|+..+.++
T Consensus 26 ~~p~~~a~~~~-~~------~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~-e~~~~~lA~~~~G~v~v~l~ 97 (540)
T PRK05857 26 QQPEAIALRRC-DG------TSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGP-ETYLSVLACAKLGAIAVMAD 97 (540)
T ss_pred hCCCcEEEeec-CC------CceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCH-HHHHHHHHHHHcCeEEEecC
Confidence 34566655432 22 14689999987777666544 5778899888776543 23334688888898888775
Q ss_pred -CCCHHHHHHHHHhcCcceecCChHH
Q 046637 257 -TVNAKEIFDNITRHKVTHFGGAPTV 281 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P~~ 281 (301)
...++.+.+.++..++..+++.+..
T Consensus 98 ~~~~~~~l~~~~~~~~~~~ii~~~~~ 123 (540)
T PRK05857 98 GNLPIAAIERFCQITDPAAALVAPGS 123 (540)
T ss_pred ccCCHHHHHHHHHhcCCceEEEeccc
Confidence 5678889999999999988877654
No 179
>PRK07798 acyl-CoA synthetase; Validated
Probab=74.46 E-value=51 Score=30.12 Aligned_cols=84 Identities=6% Similarity=-0.156 Sum_probs=61.3
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCccee
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHF 275 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~ 275 (301)
-.+|+..+...+......+ ++..++++...++- ...+. ..++++..|+..+..+ ......+...+++.++..+
T Consensus 27 ~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n--~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~ 104 (533)
T PRK07798 27 RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARN--RIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVAL 104 (533)
T ss_pred ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--CHHHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEE
Confidence 4689999877666655544 57788887777653 33333 4677788888888775 5678889999999999999
Q ss_pred cCChHHHHHHH
Q 046637 276 GGAPTVLNMIA 286 (301)
Q Consensus 276 ~~~P~~~~~l~ 286 (301)
+..+.....+.
T Consensus 105 ~~~~~~~~~~~ 115 (533)
T PRK07798 105 VYEREFAPRVA 115 (533)
T ss_pred EEchhhHHHHH
Confidence 88876655543
No 180
>PRK11761 cysM cysteine synthase B; Provisional
Probab=74.43 E-value=53 Score=27.88 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=59.0
Q ss_pred CCccEEEECCe--eeeHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHH
Q 046637 28 RDRPSVVYGDV--QYTWKETHQRCVKLASGLAHLG-ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVS 104 (301)
Q Consensus 28 ~~~~al~~~~~--~~Ty~el~~~~~~la~~L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 104 (301)
+.++++..++. +=|++. +.+..+...+.+.| +.+|+.|... ..+-.-....++|...|..+..+-|...+++..
T Consensus 26 g~~i~~K~E~~nptGS~K~--R~a~~~~~~a~~~g~~~~g~~vv~a-SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~ 102 (296)
T PRK11761 26 GNTILAKLEGNNPAGSVKD--RPALSMIVQAEKRGEIKPGDTLIEA-TSGNTGIALAMIAAIKGYRMKLIMPENMSQERR 102 (296)
T ss_pred CCEEEEEEcccCCCCCchh--HHHHHHHHHHHHcCCCCCCCEEEEe-CCChHHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 34577777653 334443 33444444455566 4778776553 334445556667778998777666766667888
Q ss_pred HHHHhcCceEEEEcC
Q 046637 105 VLLRHSEAKIIFVDY 119 (301)
Q Consensus 105 ~~l~~~~~~~vi~~~ 119 (301)
..++..++++++++.
T Consensus 103 ~~~~~~GA~v~~~~~ 117 (296)
T PRK11761 103 AAMRAYGAELILVPK 117 (296)
T ss_pred HHHHHcCCEEEEeCC
Confidence 999999999999986
No 181
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=74.32 E-value=42 Score=31.28 Aligned_cols=84 Identities=8% Similarity=-0.049 Sum_probs=63.3
Q ss_pred eeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-CCCCHHHHHHHHHhcCcceec
Q 046637 201 VICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 276 (301)
..+|+..+...+...... .++.+++++...++-.- --....++++..|+..+.. +.+.+..+...++..+++.++
T Consensus 72 ~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~-~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii 150 (570)
T PRK04319 72 EKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIP-ELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLI 150 (570)
T ss_pred eeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEE
Confidence 578999998776665554 46788999888777433 2233467788889888866 467889999999999999999
Q ss_pred CChHHHHHH
Q 046637 277 GAPTVLNMI 285 (301)
Q Consensus 277 ~~P~~~~~l 285 (301)
+.+..+...
T Consensus 151 ~~~~~~~~~ 159 (570)
T PRK04319 151 TTPALLERK 159 (570)
T ss_pred EChhhhhcc
Confidence 888776543
No 182
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=74.20 E-value=30 Score=32.27 Aligned_cols=83 Identities=13% Similarity=-0.097 Sum_probs=63.0
Q ss_pred eechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-CCCCHHHHHHHHHhcCcceecC
Q 046637 202 ICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~~~ 277 (301)
.+|+..+...+......+ ++..+|++....|-.-. -+...++++..|+..+.. +...++.+...+++.++..+++
T Consensus 57 ~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 135 (573)
T PRK05605 57 TTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQ-HIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIV 135 (573)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHH-HHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEe
Confidence 489999887766665544 57789998888775432 223467788888888877 4678999999999999999998
Q ss_pred ChHHHHHH
Q 046637 278 APTVLNMI 285 (301)
Q Consensus 278 ~P~~~~~l 285 (301)
.+.....+
T Consensus 136 ~~~~~~~~ 143 (573)
T PRK05605 136 WDKVAPTV 143 (573)
T ss_pred chhhHHHH
Confidence 87766554
No 183
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=74.12 E-value=40 Score=31.34 Aligned_cols=81 Identities=11% Similarity=-0.046 Sum_probs=60.9
Q ss_pred eeechHHHHHHHHHHHHHh----hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCccee
Q 046637 201 VICSHRGAYLNSLAAALFN----EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHF 275 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~----~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~ 275 (301)
..+|+..+...+..+...+ ++..++++...+|-.- .-....++++..|+..+... .+..+++...+++.++..+
T Consensus 48 ~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~-~~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~i 126 (562)
T PRK05677 48 KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVL-QYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKAL 126 (562)
T ss_pred ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCH-HHHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEE
Confidence 4689999988777766544 5678999888877533 22334678888898888774 6778899999999999999
Q ss_pred cCChHHH
Q 046637 276 GGAPTVL 282 (301)
Q Consensus 276 ~~~P~~~ 282 (301)
++.....
T Consensus 127 i~~~~~~ 133 (562)
T PRK05677 127 VCLANMA 133 (562)
T ss_pred EEecchh
Confidence 8765543
No 184
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=73.96 E-value=36 Score=31.02 Aligned_cols=84 Identities=10% Similarity=-0.100 Sum_probs=63.1
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceec
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 276 (301)
..+|...+...+......+ ++..++++....+-.. .-+..+++++..|+..+..+ ......+...+++.+++.++
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~-~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii 88 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNP-EFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLI 88 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCH-HHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEE
Confidence 4588888877666655544 5788999888877543 33345688888999888775 56778899999999999998
Q ss_pred CChHHHHHH
Q 046637 277 GAPTVLNMI 285 (301)
Q Consensus 277 ~~P~~~~~l 285 (301)
+.+.....+
T Consensus 89 ~~~~~~~~~ 97 (502)
T PRK08276 89 VSAALADTA 97 (502)
T ss_pred EccchhhHH
Confidence 887766554
No 185
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=73.96 E-value=45 Score=30.90 Aligned_cols=83 Identities=11% Similarity=-0.108 Sum_probs=61.7
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceec
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 276 (301)
..+|+..+...+......+ ++.+++++..+++-.. .-....++++..|+..+... ...+..+...+++.+++.++
T Consensus 47 ~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~-~~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi 125 (557)
T PRK07059 47 KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVL-QYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIV 125 (557)
T ss_pred ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCH-HHHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEE
Confidence 4789999987766655543 6778999888877533 22334578888899988774 56788999999999999998
Q ss_pred CChHHHHH
Q 046637 277 GAPTVLNM 284 (301)
Q Consensus 277 ~~P~~~~~ 284 (301)
........
T Consensus 126 ~~~~~~~~ 133 (557)
T PRK07059 126 VLENFATT 133 (557)
T ss_pred EchhhHHH
Confidence 87765443
No 186
>PLN02246 4-coumarate--CoA ligase
Probab=73.88 E-value=29 Score=31.99 Aligned_cols=83 Identities=8% Similarity=-0.008 Sum_probs=61.3
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCccee
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHF 275 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~ 275 (301)
..+|+..+...+......+ ++.+++++....+-. ..+. ..++++..|+..+... ...+..+...++..++..+
T Consensus 49 ~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~--~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l 126 (537)
T PLN02246 49 RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNC--PEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLI 126 (537)
T ss_pred ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCC--hHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEE
Confidence 4689999987766655544 678899988877654 3333 4677788888888774 5678899999999999998
Q ss_pred cCChHHHHHH
Q 046637 276 GGAPTVLNMI 285 (301)
Q Consensus 276 ~~~P~~~~~l 285 (301)
+........+
T Consensus 127 i~~~~~~~~~ 136 (537)
T PLN02246 127 ITQSCYVDKL 136 (537)
T ss_pred EEccchHHHH
Confidence 8776655443
No 187
>PLN02614 long-chain acyl-CoA synthetase
Probab=73.09 E-value=90 Score=29.94 Aligned_cols=84 Identities=13% Similarity=-0.093 Sum_probs=63.7
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCccee
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHF 275 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~ 275 (301)
..+|+..+...+......+ ++.++|++...+|-.. .+. ..++++..|+..|.+. ...+..+...++..++..+
T Consensus 78 ~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~--e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~v 155 (666)
T PLN02614 78 VWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSP--EWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIV 155 (666)
T ss_pred EEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEE
Confidence 4579998887776655544 6788999888777543 333 4678888899888774 6788999999999999999
Q ss_pred cCChHHHHHHH
Q 046637 276 GGAPTVLNMIA 286 (301)
Q Consensus 276 ~~~P~~~~~l~ 286 (301)
++....+..+.
T Consensus 156 i~~~~~~~~~~ 166 (666)
T PLN02614 156 FVEEKKISELF 166 (666)
T ss_pred EECHHHHHHHH
Confidence 98877665553
No 188
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=72.94 E-value=47 Score=28.12 Aligned_cols=93 Identities=12% Similarity=0.048 Sum_probs=57.9
Q ss_pred CCccEEEECCeeeeHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHH
Q 046637 28 RDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG-ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVL 106 (301)
Q Consensus 28 ~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 106 (301)
+.++++..++..-|..-=++.+..+.....+.| +.+|++|.- ...+-.-....+++...|..+..+-|...++.....
T Consensus 20 g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~-aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~ 98 (298)
T TIGR01139 20 NANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVE-PTSGNTGIALAMVAAARGYKLILTMPETMSIERRKL 98 (298)
T ss_pred CceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEE-eCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHH
Confidence 346777777654442222233333334455556 477877643 333444445556667789877666666655667888
Q ss_pred HHhcCceEEEEcCCc
Q 046637 107 LRHSEAKIIFVDYQL 121 (301)
Q Consensus 107 l~~~~~~~vi~~~~~ 121 (301)
++..++++++++...
T Consensus 99 ~~~~GA~v~~~~~~~ 113 (298)
T TIGR01139 99 LKAYGAELVLTPGAE 113 (298)
T ss_pred HHHcCCEEEEECCCC
Confidence 999999999998764
No 189
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=72.93 E-value=13 Score=27.46 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCC---CHHHHHHHHHhhhccceee
Q 046637 50 VKLASGLAHLGISPGDVVAALAPN---VPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 50 ~~la~~L~~~gv~~g~~V~i~~~n---~~~~~~~~lA~~~~G~~~v 92 (301)
+.+...|.+.|+.+++.|.+++.. +.....++|++..+|..-+
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v 126 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDV 126 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCe
Confidence 478888999999999999999875 5666777888888886544
No 190
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=72.76 E-value=68 Score=28.97 Aligned_cols=95 Identities=6% Similarity=-0.169 Sum_probs=67.5
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
..|+.++++.. .-.+|+..+...+......+ ++.+++++....|-...+ ...+++++..|+..+.++
T Consensus 14 ~~p~~~a~~~~---------~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~-~~~~la~~~~G~~~v~i~ 83 (483)
T PRK03640 14 LTPDRTAIEFE---------EKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEM-ILVIHALQQLGAVAVLLN 83 (483)
T ss_pred hCCCceEEEeC---------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHhCCcEEEecC
Confidence 34566665531 14699999887766655443 567889988887765432 345688888999998886
Q ss_pred -CCCHHHHHHHHHhcCcceecCChHHHHH
Q 046637 257 -TVNAKEIFDNITRHKVTHFGGAPTVLNM 284 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 284 (301)
...+.++...+++.++..++........
T Consensus 84 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 112 (483)
T PRK03640 84 TRLSREELLWQLDDAEVKCLITDDDFEAK 112 (483)
T ss_pred cCCCHHHHHHHHHhCCCCEEEEcchhhHH
Confidence 5688899999999999988776654444
No 191
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=72.42 E-value=51 Score=30.14 Aligned_cols=100 Identities=8% Similarity=-0.170 Sum_probs=68.7
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
..++.++++.-.. .| ..-.+|+..+...+...... .++.+++++....|-..-+ ....++++..|+..+...
T Consensus 19 ~~p~~~a~~~~~~--~~--~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~-~~~~la~~~~G~~~v~l~ 93 (517)
T PRK08008 19 VYGHKTALIFESS--GG--VVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEF-IFCWFGLAKIGAIMVPIN 93 (517)
T ss_pred HCCCceEEEcccC--CC--ccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCeEEEEcC
Confidence 3456666554221 11 12357888887776665554 4678889988887754422 234677888898888774
Q ss_pred -CCCHHHHHHHHHhcCcceecCChHHHHH
Q 046637 257 -TVNAKEIFDNITRHKVTHFGGAPTVLNM 284 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 284 (301)
...++.+...+++.+++.+++.+.....
T Consensus 94 ~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 122 (517)
T PRK08008 94 ARLLREESAWILQNSQASLLVTSAQFYPM 122 (517)
T ss_pred cccCHHHHHHHHHhcCceEEEEecchhHH
Confidence 6788999999999999999888765543
No 192
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=72.28 E-value=62 Score=30.62 Aligned_cols=96 Identities=15% Similarity=0.019 Sum_probs=67.4
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ- 255 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~- 255 (301)
..++.++++. .+..+| ..-.+|...|...+......+ +..++|++...+|..- -.....++++..|+..+..
T Consensus 65 ~~p~~~A~~~-~~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~v~~~ 140 (629)
T PRK10524 65 KRPEQLALIA-VSTETD--EERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIA-EAAFAMLACARIGAIHSVVF 140 (629)
T ss_pred cCCCCeEEEE-EcCCCC--ceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHhCcEEEeeC
Confidence 3456666553 332222 245689999987766655544 6789999998887533 2233467888889887766
Q ss_pred CCCCHHHHHHHHHhcCcceecCCh
Q 046637 256 RTVNAKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 256 ~~~~~~~~~~~i~~~~~t~~~~~P 279 (301)
+.+.+..+...++..++..+++..
T Consensus 141 ~~~~~~~l~~~l~~~~~~~li~~~ 164 (629)
T PRK10524 141 GGFASHSLAARIDDAKPVLIVSAD 164 (629)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEcc
Confidence 477889999999999999998754
No 193
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=72.22 E-value=40 Score=31.17 Aligned_cols=77 Identities=9% Similarity=-0.039 Sum_probs=57.6
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceec
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 276 (301)
..+|+..+...+......+ ++.++|++...+|-.- --+...++++..|+..+..+ ......+...++..++..++
T Consensus 48 ~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~-~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~ 126 (547)
T PRK06087 48 ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWC-EFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFF 126 (547)
T ss_pred CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEE
Confidence 4689999987776666544 6778999888776432 22334688899999888764 56788899999999998887
Q ss_pred CC
Q 046637 277 GA 278 (301)
Q Consensus 277 ~~ 278 (301)
+.
T Consensus 127 ~~ 128 (547)
T PRK06087 127 AP 128 (547)
T ss_pred Ee
Confidence 64
No 194
>PRK06188 acyl-CoA synthetase; Validated
Probab=72.08 E-value=30 Score=31.73 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=61.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFV 117 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 117 (301)
-.+|++.+...+... ....++..++++....+-+-.+...+++.+..|+..+..+ ...++.+...++..++.+++.
T Consensus 186 v~~s~~~l~~~~~~~---~~~~~~~~~~~~l~~~pl~~~~g~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~ 261 (524)
T PRK06188 186 VMGTHRSIATMAQIQ---LAEWEWPADPRFLMCTPLSHAGGAFFLPTLLRGGTVIVLA-KFDPAEVLRAIEEQRITATFL 261 (524)
T ss_pred eeeehHHHHHHHHHH---HhhcCCCcCcEEEEecCchhhhhHHHHHHHHcCCEEEEcC-CCCHHHHHHHHHHhCCEEEEe
Confidence 357888877665543 3445788899998888776555556677778888777764 467888999999999999888
Q ss_pred cCCchhh
Q 046637 118 DYQLLPI 124 (301)
Q Consensus 118 ~~~~~~~ 124 (301)
.......
T Consensus 262 ~P~~l~~ 268 (524)
T PRK06188 262 VPTMIYA 268 (524)
T ss_pred hHHHHHH
Confidence 6655433
No 195
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=71.98 E-value=63 Score=27.70 Aligned_cols=90 Identities=12% Similarity=0.034 Sum_probs=57.7
Q ss_pred CCccEEEECCe--eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHH
Q 046637 28 RDRPSVVYGDV--QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSV 105 (301)
Q Consensus 28 ~~~~al~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 105 (301)
+.++++..++. .=|++. +.+..+-..+.+.|..+++.|...+ .+-.-....++|...|..++.+-|...++....
T Consensus 15 g~~i~~K~E~~nptGS~K~--R~a~~~l~~a~~~g~~~~~~vv~aS-sGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~ 91 (316)
T cd06448 15 GCNVFLKLENLQPSGSFKI--RGIGHLCQKSAKQGLNECVHVVCSS-GGNAGLAAAYAARKLGVPCTIVVPESTKPRVVE 91 (316)
T ss_pred CCeEEEEeccCCCcCChHH--HHHHHHHHHHHHhhcccCCeEEEeC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 44677777653 233433 2222222233344444566665554 344555666788899988777777777788899
Q ss_pred HHHhcCceEEEEcCC
Q 046637 106 LLRHSEAKIIFVDYQ 120 (301)
Q Consensus 106 ~l~~~~~~~vi~~~~ 120 (301)
.++..++++++++..
T Consensus 92 ~l~~~GA~v~~~~~~ 106 (316)
T cd06448 92 KLRDEGATVVVHGKV 106 (316)
T ss_pred HHHHcCCEEEEECCc
Confidence 999999999999865
No 196
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=71.94 E-value=48 Score=33.94 Aligned_cols=98 Identities=12% Similarity=0.001 Sum_probs=70.1
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh--CCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE--MGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR- 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~- 256 (301)
..++.++++.. . | -.+|+..+...+......+. ..++|++...+|-...+ ....+.++..|+..+...
T Consensus 627 ~~p~~~a~~~~-~---~----~~~Ty~el~~~~~~~a~~L~~~~~~g~~V~i~~~n~~~~-~~~~la~~~~G~v~v~l~~ 697 (1146)
T PRK08633 627 RNWSRLAVADS-T---G----GELSYGKALTGALALARLLKRELKDEENVGILLPPSVAG-ALANLALLLAGKVPVNLNY 697 (1146)
T ss_pred hcCCCcEEEcC-C---C----CcCcHHHHHHHHHHHHHHHHHhCCCCCeEEEECCCchHH-HHHHHHHHHcCCEEEEeCC
Confidence 34566666532 1 1 26899998877666555442 46889888888764322 234688888999887764
Q ss_pred CCCHHHHHHHHHhcCcceecCChHHHHHHH
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAPTVLNMIA 286 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 286 (301)
...++++...+++.+++.+.+.+.....+.
T Consensus 698 ~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 727 (1146)
T PRK08633 698 TASEAALKSAIEQAQIKTVITSRKFLEKLK 727 (1146)
T ss_pred CcCHHHHHHHHHHcCCCEEEEcHHHHHHHh
Confidence 567899999999999999999888777764
No 197
>PLN03051 acyl-activating enzyme; Provisional
Probab=71.55 E-value=32 Score=31.46 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=58.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA-MYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIF 116 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (301)
-.+|.+.+...+... ....++.++|++....|-.-. ....+++++..|+..+........+.+...+++.++.++.
T Consensus 137 V~~sh~~~~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~ 213 (499)
T PLN03051 137 IPWTHLSPLRCASDG---WAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLG 213 (499)
T ss_pred EEEccchHHHHHHHH---HHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEE
Confidence 367887765543322 234578899987766554321 1235677788898888776555678899999999999998
Q ss_pred EcCCchhhH
Q 046637 117 VDYQLLPIA 125 (301)
Q Consensus 117 ~~~~~~~~~ 125 (301)
.-......+
T Consensus 214 ~vP~~~~~l 222 (499)
T PLN03051 214 LVPSIVKAW 222 (499)
T ss_pred eCHHHHHHH
Confidence 876665544
No 198
>PLN02574 4-coumarate--CoA ligase-like
Probab=70.96 E-value=70 Score=29.76 Aligned_cols=98 Identities=14% Similarity=-0.001 Sum_probs=68.9
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH----hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF----NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~----~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
.++.++++- +.+| ..+|+..+...+..+... .++.++|++....+-.. --....+.++..|+..+...
T Consensus 52 ~~~~~a~~~---~~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~-~~~~~~la~~~~G~v~v~l~ 123 (560)
T PLN02574 52 HNGDTALID---SSTG----FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSV-YFPVIFLAVLSLGGIVTTMN 123 (560)
T ss_pred cCCCCEEEE---CCCC----CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcc-hHHHHHHHHHHhCeEEeCcC
Confidence 445666553 2222 257888887766655543 46788999888887543 22334678888998888775
Q ss_pred -CCCHHHHHHHHHhcCcceecCChHHHHHHH
Q 046637 257 -TVNAKEIFDNITRHKVTHFGGAPTVLNMIA 286 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 286 (301)
...+.++...+++.++..+++.+.....+.
T Consensus 124 p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 154 (560)
T PLN02574 124 PSSSLGEIKKRVVDCSVGLAFTSPENVEKLS 154 (560)
T ss_pred cccCHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 567889999999999999988887766653
No 199
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=70.31 E-value=44 Score=28.37 Aligned_cols=90 Identities=18% Similarity=0.140 Sum_probs=57.0
Q ss_pred CCccEEEECCeee--eHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHH
Q 046637 28 RDRPSVVYGDVQY--TWKETHQRCVKLASGLAHLG-ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVS 104 (301)
Q Consensus 28 ~~~~al~~~~~~~--Ty~el~~~~~~la~~L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 104 (301)
+.++.+..++..- |++. +.+..+...+.+.| +.+|+.|. ....+-.-....++|...|..+..+-|...++...
T Consensus 21 g~~i~~K~E~~~ptGS~K~--R~a~~~~~~a~~~g~~~~g~~vv-~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~ 97 (299)
T TIGR01136 21 DARVLAKLEGRNPSGSVKD--RIALSMIEDAEKRGLLKPGDTII-EATSGNTGIALAMVAAAKGYKLILTMPETMSLERR 97 (299)
T ss_pred CceEEEEEcccCCCCCccH--HHHHHHHHHHHHcCCCCCCCEEE-EeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHH
Confidence 3467777766332 3432 33333334455555 47787664 34444445555667778898777666666667777
Q ss_pred HHHHhcCceEEEEcCC
Q 046637 105 VLLRHSEAKIIFVDYQ 120 (301)
Q Consensus 105 ~~l~~~~~~~vi~~~~ 120 (301)
..++..++++++++..
T Consensus 98 ~~~~~~GA~v~~~~~~ 113 (299)
T TIGR01136 98 KLLRAYGAELILTPAE 113 (299)
T ss_pred HHHHHcCCEEEEeCCC
Confidence 8999999999999865
No 200
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=70.13 E-value=28 Score=30.19 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=47.3
Q ss_pred HHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 55 GLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 55 ~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
.|+..+++||++|+|.+--+.-.....+|-.. |+-++.++.+ ++-.+..++.+++.++...
T Consensus 158 alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~---~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 158 ALKKANVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRS---EEKLELAKKLGADHVINSS 218 (339)
T ss_pred ehhhcCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCC---hHHHHHHHHhCCcEEEEcC
Confidence 36667899999999999988888888888744 4888888665 4555566777888888865
No 201
>PRK07476 eutB threonine dehydratase; Provisional
Probab=70.01 E-value=51 Score=28.35 Aligned_cols=94 Identities=14% Similarity=-0.047 Sum_probs=55.0
Q ss_pred CCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHH
Q 046637 28 RDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLL 107 (301)
Q Consensus 28 ~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l 107 (301)
+-++++..++..-|-.-=.+.+..+-..+.+.|..+| |. ....+=.-..+.++|...|..++.+-|...++.....+
T Consensus 33 g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~~g--vv-~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~ 109 (322)
T PRK07476 33 GVPVWLKLETLQPTGSFKLRGATNALLSLSAQERARG--VV-TASTGNHGRALAYAARALGIRATICMSRLVPANKVDAI 109 (322)
T ss_pred CCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhCCe--EE-EECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHH
Confidence 3467777766432222111222222223344454433 32 22334445566677788998777666776767788889
Q ss_pred HhcCceEEEEcCCchhh
Q 046637 108 RHSEAKIIFVDYQLLPI 124 (301)
Q Consensus 108 ~~~~~~~vi~~~~~~~~ 124 (301)
+..++++++++....+.
T Consensus 110 ~~~GA~V~~~~~~~~~~ 126 (322)
T PRK07476 110 RALGAEVRIVGRSQDDA 126 (322)
T ss_pred HHcCCEEEEECCCHHHH
Confidence 99999999998654433
No 202
>PRK13383 acyl-CoA synthetase; Provisional
Probab=70.00 E-value=45 Score=30.55 Aligned_cols=84 Identities=12% Similarity=-0.062 Sum_probs=62.7
Q ss_pred eechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecC
Q 046637 202 ICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 277 (301)
.+|...+...+......+ ++.+++++...+|-.- ..+...++++..|+..+..+ ...++.+...+++.++..+++
T Consensus 60 ~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~-~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~ 138 (516)
T PRK13383 60 ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGR-GFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVA 138 (516)
T ss_pred cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCH-HHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEE
Confidence 588888877766666554 5778898887776322 22334677888898888775 668899999999999999999
Q ss_pred ChHHHHHHH
Q 046637 278 APTVLNMIA 286 (301)
Q Consensus 278 ~P~~~~~l~ 286 (301)
.+.....+.
T Consensus 139 ~~~~~~~~~ 147 (516)
T PRK13383 139 DNEFAERIA 147 (516)
T ss_pred chhHHHHHH
Confidence 887766543
No 203
>PLN02247 indole-3-acetic acid-amido synthetase
Probab=69.94 E-value=5.6 Score=37.26 Aligned_cols=29 Identities=21% Similarity=0.086 Sum_probs=25.1
Q ss_pred CCCceEEEeccCCCC-CCCeeeechHHHHH
Q 046637 182 ECDPIALNYTSGTTS-SPKGVICSHRGAYL 210 (301)
Q Consensus 182 ~~~~~~i~~TSGtTG-~pK~v~~s~~~l~~ 210 (301)
++.+.++..|||||| ++|-+.+|+..+-.
T Consensus 88 ~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~ 117 (606)
T PLN02247 88 AQPITELLTSSGTSGGQPKLMPSTAEELDR 117 (606)
T ss_pred CCCcceeeccCCCCCCceeEeeccHHHHHH
Confidence 677788999999995 89999999988744
No 204
>PLN03013 cysteine synthase
Probab=69.90 E-value=76 Score=28.62 Aligned_cols=70 Identities=23% Similarity=0.202 Sum_probs=50.5
Q ss_pred HHHHHHHhcC-CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCC
Q 046637 51 KLASGLAHLG-ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120 (301)
Q Consensus 51 ~la~~L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (301)
.+-....+.| +++|....+....+---+...++|...|..++.+-|...+++....++..++++++++..
T Consensus 160 ~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~ 230 (429)
T PLN03013 160 SMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPA 230 (429)
T ss_pred HHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCC
Confidence 3333444555 578865555555555666667777789987777767777888899999999999999764
No 205
>PRK13391 acyl-CoA synthetase; Provisional
Probab=69.88 E-value=76 Score=29.00 Aligned_cols=97 Identities=11% Similarity=0.029 Sum_probs=68.5
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR- 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~- 256 (301)
.++.++++...+| ..+|...+...+......+ ++.+++++....+-... -+...+.++..|+..+...
T Consensus 10 ~p~~~a~~~~~~~-------~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~-~~~~~~a~~~~G~~~~~l~~ 81 (511)
T PRK13391 10 TPDKPAVIMASTG-------EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLR-YLEVCWAAERSGLYYTCVNS 81 (511)
T ss_pred CCCceEEEecCCC-------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHhccEEecccc
Confidence 4556665544332 3589999877766665544 57788988887775432 2334678888898888774
Q ss_pred CCCHHHHHHHHHhcCcceecCChHHHHHH
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAPTVLNMI 285 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 285 (301)
..+...+...++..++..+.+.+.....+
T Consensus 82 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~ 110 (511)
T PRK13391 82 HLTPAEAAYIVDDSGARALITSAAKLDVA 110 (511)
T ss_pred ccCHHHHHHHHhccCCcEEEEchhhHHHH
Confidence 56788999999999999998887665443
No 206
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=69.87 E-value=26 Score=30.88 Aligned_cols=66 Identities=23% Similarity=0.271 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCC-----CCCHHHHHHHHHhcCceEEEEc
Q 046637 49 CVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNT-----RHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 49 ~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
+..+.-.|+.+|+++||-|.+ + +.-|+...=++...|+.+|.++- +.+++.++..+... .+.|+.-
T Consensus 59 T~AL~laL~al~ig~GDeVI~--p-s~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~-tKAIipV 129 (374)
T COG0399 59 TAALHLALLALAIGPGDEVIV--P-SFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPR-TKAIIPV 129 (374)
T ss_pred HHHHHHHHHhcCCCCCCEEEe--c-CCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccC-CeEEEEe
Confidence 455666778789999995554 2 45688888899999999988764 35788888888664 5666553
No 207
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=69.84 E-value=38 Score=31.39 Aligned_cols=82 Identities=12% Similarity=-0.069 Sum_probs=61.3
Q ss_pred eechHHHHHHHHHHHHH----hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-CCCCHHHHHHHHHhcCcceec
Q 046637 202 ICSHRGAYLNSLAAALF----NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~----~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 276 (301)
.+|+..+...+..+... .+..+++++...+|-.-. -....++++..|+..+.. +.+.+..+...+++.+++.++
T Consensus 50 ~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi 128 (560)
T PRK08751 50 TITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQ-YPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLV 128 (560)
T ss_pred eeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHH-HHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEE
Confidence 58999988777766653 467888998888775432 223467888889998866 467889999999999999998
Q ss_pred CChHHHHH
Q 046637 277 GAPTVLNM 284 (301)
Q Consensus 277 ~~P~~~~~ 284 (301)
+.......
T Consensus 129 ~~~~~~~~ 136 (560)
T PRK08751 129 VIDNFGTT 136 (560)
T ss_pred EcchhHHH
Confidence 87655443
No 208
>PRK08308 acyl-CoA synthetase; Validated
Probab=69.82 E-value=77 Score=28.04 Aligned_cols=85 Identities=12% Similarity=0.211 Sum_probs=60.6
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH--HHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP--AMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKII 115 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (301)
-.+|++.+...+..+... .++..+|++....|-.- .+...++.++..|+..+... ..+++.+...++..++.++
T Consensus 119 v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~t~~ 194 (414)
T PRK08308 119 IRRSWTEIDREIEAYNEA---LNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIIT-NKNPKFALNILRNTPQHIL 194 (414)
T ss_pred EEEehHhHHHHHHHHHHh---hCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecC-CCCHHHHHHHHHHhCCeEE
Confidence 468999888766655543 46678888877766543 34456778888898777664 4567888899999999988
Q ss_pred EEcCCchhhHH
Q 046637 116 FVDYQLLPIAQ 126 (301)
Q Consensus 116 i~~~~~~~~~~ 126 (301)
+........+.
T Consensus 195 ~~~P~~~~~l~ 205 (414)
T PRK08308 195 YAVPLMLHILG 205 (414)
T ss_pred EcCHHHHHHHH
Confidence 87765554443
No 209
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=69.58 E-value=51 Score=30.49 Aligned_cols=84 Identities=11% Similarity=-0.046 Sum_probs=62.0
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceec
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 276 (301)
..+|+..+...+..+...+ ++.+++++...+|-...+ ....++++..|+..+... ......+...+++.++..+.
T Consensus 54 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i 132 (546)
T PLN02330 54 KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEY-GIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIV 132 (546)
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHH-HHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEE
Confidence 4689999988777666544 567889888877654322 234678888999888664 56778899999999999998
Q ss_pred CChHHHHHH
Q 046637 277 GAPTVLNMI 285 (301)
Q Consensus 277 ~~P~~~~~l 285 (301)
+.+..+..+
T Consensus 133 ~~~~~~~~~ 141 (546)
T PLN02330 133 TNDTNYGKV 141 (546)
T ss_pred EccchhhhH
Confidence 877655544
No 210
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=68.69 E-value=60 Score=31.08 Aligned_cols=84 Identities=15% Similarity=-0.019 Sum_probs=64.0
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCccee
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHF 275 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~ 275 (301)
..+|+..+...+......+ ++.++|++...++-.- .+. ..++++..|+..|.+. ...++.+...+++.+++.+
T Consensus 76 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~--e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v 153 (660)
T PLN02861 76 VWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCP--EWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIA 153 (660)
T ss_pred eEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEE
Confidence 4689999888777666544 6789999888877532 333 4678888999888774 6788999999999999999
Q ss_pred cCChHHHHHHH
Q 046637 276 GGAPTVLNMIA 286 (301)
Q Consensus 276 ~~~P~~~~~l~ 286 (301)
++....+..+.
T Consensus 154 ~~~~~~~~~~~ 164 (660)
T PLN02861 154 FVQESKISSIL 164 (660)
T ss_pred EECHHHHHHHH
Confidence 98776655543
No 211
>PRK07470 acyl-CoA synthetase; Validated
Probab=68.38 E-value=77 Score=29.11 Aligned_cols=81 Identities=10% Similarity=-0.143 Sum_probs=59.8
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCccee
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHF 275 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~ 275 (301)
..+|+..+...+......+ ++..++++....+-.- .+. ..++++..|+..+..+ ......+...+++.+++.+
T Consensus 31 ~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~ 108 (528)
T PRK07470 31 RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCN--QMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAM 108 (528)
T ss_pred ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCH--HHHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEE
Confidence 4688999877666655444 5778888877766433 333 4677888898888775 5678899999999999999
Q ss_pred cCChHHHH
Q 046637 276 GGAPTVLN 283 (301)
Q Consensus 276 ~~~P~~~~ 283 (301)
++.+...+
T Consensus 109 i~~~~~~~ 116 (528)
T PRK07470 109 ICHADFPE 116 (528)
T ss_pred EEcchhHH
Confidence 88876543
No 212
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=67.68 E-value=68 Score=29.47 Aligned_cols=95 Identities=8% Similarity=-0.024 Sum_probs=64.5
Q ss_pred cCCccEEEEC---------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH--H-HHHHhhhccceeeec
Q 046637 27 YRDRPSVVYG---------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMY--E-LHFGVPMAGAVLCTL 94 (301)
Q Consensus 27 ~~~~~al~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~--~-~~lA~~~~G~~~v~l 94 (301)
.++.+|++.. +..+|.+.+...+.... ...++.++|++....|..-.+- . ..++++..|+..+..
T Consensus 181 ~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~ 257 (527)
T TIGR02275 181 KSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSV---EICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLA 257 (527)
T ss_pred CCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHH---hhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEEC
Confidence 4566666641 14688888876655433 3457889999888777543322 2 356777788876654
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcCCchhhH
Q 046637 95 NTRHDSAMVSVLLRHSEAKIIFVDYQLLPIA 125 (301)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (301)
+......+...+++.++.++.........+
T Consensus 258 -~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 287 (527)
T TIGR02275 258 -PDPSPTDCFPLIERHKVTVTALVPPAVALW 287 (527)
T ss_pred -CCCCHHHHHHHHHHhCCeEEEecHHHHHHH
Confidence 456778888899999999999887665443
No 213
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=67.36 E-value=23 Score=29.84 Aligned_cols=64 Identities=14% Similarity=0.100 Sum_probs=49.6
Q ss_pred CCCCCCEEEEEcCCCHHHHHHHHHhhhccc-eeeecCCCCCHHHHHHHHHhcCceEEEEcCCchh
Q 046637 60 GISPGDVVAALAPNVPAMYELHFGVPMAGA-VLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP 123 (301)
Q Consensus 60 gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (301)
.+++||.|+-.+.||.---..+=-|-..|. ..-.+..+-..+++...|+..+++-||++++...
T Consensus 157 ~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~ 221 (354)
T KOG0025|consen 157 QLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEELRD 221 (354)
T ss_pred hcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHHhcc
Confidence 578999999999998765444444445565 4445666778899999999999999999987664
No 214
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=67.34 E-value=70 Score=29.48 Aligned_cols=96 Identities=15% Similarity=-0.049 Sum_probs=65.1
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR- 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~- 256 (301)
.++.++++..-... .....+|+..|...+......+ ++.+++++...++-.. -.+...++++..|+..+...
T Consensus 35 ~p~~~a~~~~~~~~---~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~-~~~~~~la~~~~G~~~v~l~~ 110 (538)
T TIGR03208 35 CPDKPALTAYRDGH---GAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRW-EFTALYLACARIGAVLNPLMP 110 (538)
T ss_pred CCCceEEEeecccC---CCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHhcCEEEeccCc
Confidence 34566665432111 1235789999877666555544 5778898888877432 23344678888898888664
Q ss_pred CCCHHHHHHHHHhcCcceecCChH
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAPT 280 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P~ 280 (301)
...++.+...++..+++.+++.+.
T Consensus 111 ~~~~~~l~~~l~~~~~~~li~~~~ 134 (538)
T TIGR03208 111 IFRERELSFMLNHADSKVFVVPSV 134 (538)
T ss_pred ccCHHHHHHHHHhcCCeEEEEccc
Confidence 567889999999999999887553
No 215
>PRK09088 acyl-CoA synthetase; Validated
Probab=67.23 E-value=84 Score=28.46 Aligned_cols=79 Identities=11% Similarity=-0.157 Sum_probs=58.3
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceec
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 276 (301)
..+|+..+...+......+ ++..++++...+|-... -+...+.++..|+..+... ...+..+...+++.+++.++
T Consensus 21 ~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~-~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii 99 (488)
T PRK09088 21 RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVW-LVALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLLL 99 (488)
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEE
Confidence 3689999987776655544 56788988887775443 2234577888888888774 56788999999999999997
Q ss_pred CChH
Q 046637 277 GAPT 280 (301)
Q Consensus 277 ~~P~ 280 (301)
+...
T Consensus 100 ~~~~ 103 (488)
T PRK09088 100 GDDA 103 (488)
T ss_pred Ecch
Confidence 7553
No 216
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=67.12 E-value=24 Score=31.11 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=37.1
Q ss_pred HHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCC-----CCHHHHHHHHHhcCceEEEEc
Q 046637 55 GLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTR-----HDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 55 ~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~~ 118 (301)
.+...++++||.|++-.+. +.....++...|+.+++++.. ...+++...+.. +.++|+..
T Consensus 62 ~l~al~~~pGd~Viv~~~t---~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~-~tk~Iip~ 126 (376)
T TIGR02379 62 AALLLDIQPGDEVIMPSYT---FVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITH-RTKAIVPV 126 (376)
T ss_pred HHHHcCCCCcCEEEECCCC---cHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc-CceEEEEe
Confidence 3445578999988875544 334445556778876666532 355667776643 56666654
No 217
>PRK06164 acyl-CoA synthetase; Validated
Probab=67.03 E-value=67 Score=29.58 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=67.1
Q ss_pred CCccEEEEC--C-------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC-HHHHHHHHHhhhccceeeecCCC
Q 046637 28 RDRPSVVYG--D-------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNV-PAMYELHFGVPMAGAVLCTLNTR 97 (301)
Q Consensus 28 ~~~~al~~~--~-------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~-~~~~~~~lA~~~~G~~~v~l~~~ 97 (301)
++.++++.. + -.+|.+.+...+..++..+ ++.+++++....|-+ .-.+..+++.+..|+..+.. +.
T Consensus 180 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~-~~ 255 (540)
T PRK06164 180 PDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY---GYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCE-PV 255 (540)
T ss_pred CCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc---CCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEec-CC
Confidence 466776661 1 3678888877766655544 678999988887763 22345677888888777665 56
Q ss_pred CCHHHHHHHHHhcCceEEEEcCCchhhH
Q 046637 98 HDSAMVSVLLRHSEAKIIFVDYQLLPIA 125 (301)
Q Consensus 98 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (301)
.....+...+++.++.+++........+
T Consensus 256 ~~~~~~~~~l~~~~~t~~~~~p~~l~~l 283 (540)
T PRK06164 256 FDAARTARALRRHRVTHTFGNDEMLRRI 283 (540)
T ss_pred CCHHHHHHHHHHhCCeeecCCHHHHHHH
Confidence 7788899999999999998876655443
No 218
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=67.01 E-value=59 Score=31.38 Aligned_cols=85 Identities=9% Similarity=-0.046 Sum_probs=65.3
Q ss_pred eeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEee-CCCCHHHHHHHHHhcCccee
Q 046637 201 VICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVTHF 275 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~ 275 (301)
..+|+..+...+...... .++.++|++...++-.. .+. ..++++..|+..|.+ +...++.+...++..++..+
T Consensus 105 ~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~--e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~l 182 (696)
T PLN02387 105 EWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRA--EWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTV 182 (696)
T ss_pred EEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEE
Confidence 457999888777666554 46789999888776432 333 467788889988866 47789999999999999999
Q ss_pred cCChHHHHHHHc
Q 046637 276 GGAPTVLNMIAN 287 (301)
Q Consensus 276 ~~~P~~~~~l~~ 287 (301)
++.+..+..+.+
T Consensus 183 i~~~~~~~~l~~ 194 (696)
T PLN02387 183 ICDSKQLKKLID 194 (696)
T ss_pred EECHHHHHHHHH
Confidence 998887777654
No 219
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=66.50 E-value=61 Score=34.12 Aligned_cols=98 Identities=10% Similarity=-0.159 Sum_probs=66.7
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
..++.++++...+...+......+|+..|...+......+ +..+++++...+|-...+ +...++++..|+..+.+.
T Consensus 248 ~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~-i~~~lA~l~~G~~~vpld 326 (1389)
T TIGR03443 248 KHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDL-VVAVMGVLKAGATFSVID 326 (1389)
T ss_pred hCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHH-HHHHHHHHhhCcEEeccC
Confidence 3466777664322111112245799999988777666544 677899988888754322 334688899999988775
Q ss_pred -CCCHHHHHHHHHhcCcceecCC
Q 046637 257 -TVNAKEIFDNITRHKVTHFGGA 278 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~ 278 (301)
...+..+...++..++..+++.
T Consensus 327 p~~p~~~~~~~l~~~~~~~li~~ 349 (1389)
T TIGR03443 327 PAYPPARQTIYLSVAKPRALIVI 349 (1389)
T ss_pred CCCcHHHHHHHHHhcCCCEEEEe
Confidence 5567788888888898887754
No 220
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=66.29 E-value=1.1e+02 Score=28.44 Aligned_cols=86 Identities=12% Similarity=0.174 Sum_probs=58.8
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-HHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM-YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIF 116 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (301)
-.+|++.+...+..+. .....++.+++++....|-.-.+ ....++.+..|...+...+..+.+.+...+++.++.+++
T Consensus 199 v~~s~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~ 277 (576)
T PRK05620 199 VVYSHRSLYLQSLSLR-TTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAH 277 (576)
T ss_pred EEEEcHHHHHHHHHhh-hhhhcCCCCCCeEEEeCChHHhhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceee
Confidence 3678887754443322 12235788999988877654332 334567777888777666677889999999999999988
Q ss_pred EcCCchhh
Q 046637 117 VDYQLLPI 124 (301)
Q Consensus 117 ~~~~~~~~ 124 (301)
........
T Consensus 278 ~~P~~~~~ 285 (576)
T PRK05620 278 GVPTLWIQ 285 (576)
T ss_pred ecCHHHHH
Confidence 87665543
No 221
>PLN02479 acetate-CoA ligase
Probab=66.16 E-value=96 Score=28.89 Aligned_cols=80 Identities=15% Similarity=0.066 Sum_probs=61.1
Q ss_pred eechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecC
Q 046637 202 ICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 277 (301)
.+|...|...+..+...+ ++.++|++....|..- .-+...++++..|+..+... .+....+...+++.++..+++
T Consensus 45 ~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~-~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~ 123 (567)
T PLN02479 45 RYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIP-AMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMV 123 (567)
T ss_pred eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcH-HHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEE
Confidence 589999887777766555 6789999888887432 22334678888898888775 667889999999999999998
Q ss_pred ChHHH
Q 046637 278 APTVL 282 (301)
Q Consensus 278 ~P~~~ 282 (301)
.+..+
T Consensus 124 ~~~~~ 128 (567)
T PLN02479 124 DQEFF 128 (567)
T ss_pred chhhh
Confidence 77654
No 222
>PRK05852 acyl-CoA synthetase; Validated
Probab=66.16 E-value=69 Score=29.50 Aligned_cols=90 Identities=8% Similarity=-0.266 Sum_probs=62.5
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
..++.++++... + ...+|...+...+......+ ++.+++++...+|-.- ..+...++++..|+..+..+
T Consensus 28 ~~p~~~ai~~~~-~------~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~-~~~~~~lA~~~~G~~~v~l~ 99 (534)
T PRK05852 28 RLPEAPALVVTA-D------RIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNA-EFVVALLAASRADLVVVPLD 99 (534)
T ss_pred hCCCCcEEEecC-C------CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcH-HHHHHHHHHHHcCcEEeecC
Confidence 345666655321 1 23588888877666555444 5788999888776432 33345688888898888774
Q ss_pred -CCCHHHHHHHHHhcCcceecC
Q 046637 257 -TVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~ 277 (301)
..++..+...++..++..+++
T Consensus 100 ~~~~~~~l~~~l~~~~~~~ii~ 121 (534)
T PRK05852 100 PALPIAEQRVRSQAAGARVVLI 121 (534)
T ss_pred CCCCcHHHHHHHHhCCCCEEEE
Confidence 677889999999999999874
No 223
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=66.10 E-value=82 Score=29.31 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=65.8
Q ss_pred cCCccEEEEC--C-------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH-HHHHHHHHhhhccceeeecCC
Q 046637 27 YRDRPSVVYG--D-------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP-AMYELHFGVPMAGAVLCTLNT 96 (301)
Q Consensus 27 ~~~~~al~~~--~-------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~-~~~~~~lA~~~~G~~~v~l~~ 96 (301)
.++.++++.. | -.+|.+.+...+.... ...++.++|++....|-.- ..+...++.+..|+..+.. +
T Consensus 170 ~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~~-~ 245 (563)
T PLN02860 170 APDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLL-P 245 (563)
T ss_pred CCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHH---hhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEec-C
Confidence 3466666541 1 3678888765544432 3457889998887777532 2233466777788776655 5
Q ss_pred CCCHHHHHHHHHhcCceEEEEcCCchhhHHH
Q 046637 97 RHDSAMVSVLLRHSEAKIIFVDYQLLPIAQG 127 (301)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 127 (301)
.+..+.+...+++.++.++.........+.+
T Consensus 246 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 276 (563)
T PLN02860 246 KFDAKAALQAIKQHNVTSMITVPAMMADLIS 276 (563)
T ss_pred CCCHHHHHHHHHHhCCeeEEeChHHHHHHHH
Confidence 6788999999999999999888776655443
No 224
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=66.06 E-value=1.1e+02 Score=28.03 Aligned_cols=95 Identities=7% Similarity=-0.139 Sum_probs=65.6
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEee
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQ 255 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~ 255 (301)
..++.++++- . .-.+|+..+...+...... .+...++++...++-. ..+. ..++++..|+..+.+
T Consensus 17 ~~p~~~a~~~--~-------~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~--~~~~~~~~a~~~~G~~~v~l 85 (508)
T TIGR02262 17 GRGGKTAFID--D-------ISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDG--VDFPIAFLGAIRAGIVPVAL 85 (508)
T ss_pred ccCCceEEEe--C-------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHHHHcCcEEeec
Confidence 3456666543 1 2357888887666555443 4677888877766543 3433 467788889888877
Q ss_pred C-CCCHHHHHHHHHhcCcceecCChHHHHHH
Q 046637 256 R-TVNAKEIFDNITRHKVTHFGGAPTVLNMI 285 (301)
Q Consensus 256 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 285 (301)
+ .+++..+...+++.+++.++........+
T Consensus 86 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~ 116 (508)
T TIGR02262 86 NTLLTADDYAYMLEDSRARVVFVSGELLPVI 116 (508)
T ss_pred cCCCCHHHHHHHHHhcCCeEEEEchhhHHHH
Confidence 5 57889999999999999998877655443
No 225
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=66.00 E-value=29 Score=30.55 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=38.1
Q ss_pred HHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCC--C---CCHHHHHHHHHhcCceEEEEc
Q 046637 56 LAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNT--R---HDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 56 L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~--~---~~~~~l~~~l~~~~~~~vi~~ 118 (301)
+...++++||.|.+-.+..+. ...++...|+.++.++. . .+.+++...+.. +.++|+..
T Consensus 63 l~~~~~~~Gd~Viv~~~t~~~---~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~-~tk~i~~~ 126 (375)
T PRK11706 63 ALLLDIQPGDEVIMPSYTFVS---TANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITP-KTRAIVPV 126 (375)
T ss_pred HHHhCCCCCCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCC-CCeEEEEe
Confidence 344578899998886655443 34456677887766643 2 457788877754 56666544
No 226
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=65.59 E-value=99 Score=27.62 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=45.7
Q ss_pred ceeeecCCC---CCHHHHHHHHHhcCceEEEEcCCchhh---HHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCc
Q 046637 89 AVLCTLNTR---HDSAMVSVLLRHSEAKIIFVDYQLLPI---AQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNL 162 (301)
Q Consensus 89 ~~~v~l~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 162 (301)
.+..++++. ..-+++..+++..+|++|++....... +++..+... ....+++.|..
T Consensus 144 ~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~~~~d~~~~reIad----~vga~l~~D~s-------------- 205 (399)
T PF00464_consen 144 SVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGASSYPRPIDFKRFREIAD----EVGAYLMADIS-------------- 205 (399)
T ss_dssp EEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-SSTSS---HHHHHHHHH----HTT-EEEEE-T--------------
T ss_pred EEeeeeecCCCeECHHHHHHHHhhcCCCEEEECchhccCccCHHHHHHHHH----hcCcEEEeccc--------------
Confidence 445566643 355899999999999999998753322 223333222 34555555542
Q ss_pred cHHHHHhhccccccCCCCCCCCceEEEeccCCC--CCCCeeeech
Q 046637 163 EYESLLAIGKLREVRRPKDECDPIALNYTSGTT--SSPKGVICSH 205 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT--G~pK~v~~s~ 205 (301)
....++..+.-..+ .+.-| ++..|..-| |...|++++.
T Consensus 206 H~~GLIa~g~~~~P---~~~AD--vvt~sThKtl~GPrggiI~~~ 245 (399)
T PF00464_consen 206 HIAGLIAGGLFPNP---FPYAD--VVTGSTHKTLRGPRGGIILTN 245 (399)
T ss_dssp TTHHHHHTTSS--G---CCTSS--EEEEESSGGG-SSS-EEEEES
T ss_pred ccccceehheecCc---cccce--EEEeeccccccccCceEEEEc
Confidence 33444444433211 11112 444444444 6667888888
No 227
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=65.36 E-value=74 Score=25.91 Aligned_cols=95 Identities=12% Similarity=-0.033 Sum_probs=58.9
Q ss_pred cCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHH
Q 046637 27 YRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVL 106 (301)
Q Consensus 27 ~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 106 (301)
.+.++++..++..-|.+-=++.+..+...+.+.|..+++.|... ..+-.-..+.++|...|..++.+-|...+......
T Consensus 13 ~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~-ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~ 91 (244)
T cd00640 13 GGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIES-TGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQ 91 (244)
T ss_pred cCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHH
Confidence 34467777766443321112223333334444443345555444 33555566667777799877777777777888899
Q ss_pred HHhcCceEEEEcCCch
Q 046637 107 LRHSEAKIIFVDYQLL 122 (301)
Q Consensus 107 l~~~~~~~vi~~~~~~ 122 (301)
++..+++++.++....
T Consensus 92 ~~~~Ga~v~~~~~~~~ 107 (244)
T cd00640 92 MRALGAEVVLVPGDFD 107 (244)
T ss_pred HHHCCCEEEEECCCHH
Confidence 9999999999987743
No 228
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=65.11 E-value=28 Score=31.60 Aligned_cols=86 Identities=20% Similarity=0.308 Sum_probs=60.2
Q ss_pred ccEEEEC-CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC-CHHHHHHHHHhhhccceeeecCCCCCHHHHHHHH
Q 046637 30 RPSVVYG-DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN-VPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLL 107 (301)
Q Consensus 30 ~~al~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n-~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l 107 (301)
.+++++- +.++-+++.... +.-.|..+...|.+.-|. +...+.+=|-=+...++++|++.+..-..+..++
T Consensus 390 qpcvvf~~H~SlRfgdv~h~-------~e~~g~sp~NsvI~tdpD~~~~~vl~PfrpLamK~i~cpidtrlnfqql~kLl 462 (653)
T KOG1138|consen 390 QPCVVFMGHPSLRFGDVVHF-------LECWGLSPKNSVIFTDPDFSYLLVLAPFRPLAMKIIYCPIDTRLNFQQLPKLL 462 (653)
T ss_pred cceeEecCCcchhhhHHHHH-------HHHhcCCCCCceEEeCCCCchhhhhcCCccccceeEeccccccccHHHHHHHH
Confidence 3566653 345666554433 333377776667766663 4455555555566788999999999999999999
Q ss_pred HhcCceEEEEcCCch
Q 046637 108 RHSEAKIIFVDYQLL 122 (301)
Q Consensus 108 ~~~~~~~vi~~~~~~ 122 (301)
+..+|+++++.++..
T Consensus 463 kelqPk~vlcpeayt 477 (653)
T KOG1138|consen 463 KELQPKIVLCPEAYT 477 (653)
T ss_pred HHhCCCEEEChhhhc
Confidence 999999999986543
No 229
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=64.89 E-value=1e+02 Score=27.31 Aligned_cols=114 Identities=15% Similarity=0.081 Sum_probs=65.4
Q ss_pred CCCCCCCCHHHHHHHHhhhcC-CccEEEECCee---eeHHHHHHHHHHHHHHHHhc----------------CCCC--CC
Q 046637 8 SANYVPLTPISFLERSAVVYR-DRPSVVYGDVQ---YTWKETHQRCVKLASGLAHL----------------GISP--GD 65 (301)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~-~~~al~~~~~~---~Ty~el~~~~~~la~~L~~~----------------gv~~--g~ 65 (301)
.+++ ..|..--+....+..+ .++++.+++.+ -||+..-.... +++.+.+. .+++ |.
T Consensus 17 ~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (376)
T TIGR01747 17 IPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYA-IAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQ 94 (376)
T ss_pred CCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHH-HHHHHHHHhCCCcccCCHHHHhhhHHHhhcCC
Confidence 3444 3333333344455555 57888888753 36665433333 44433320 1111 22
Q ss_pred EEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchh
Q 046637 66 VVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP 123 (301)
Q Consensus 66 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (301)
+-.+....+=.-..+.++|...|..++.+-|...+......++..++++++++....+
T Consensus 95 ~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~~~~~ 152 (376)
T TIGR01747 95 ATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDMNYDD 152 (376)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHH
Confidence 3334444444555666777788886666556656678888888999999999875444
No 230
>PRK08162 acyl-CoA synthetase; Validated
Probab=64.57 E-value=52 Score=30.36 Aligned_cols=84 Identities=11% Similarity=-0.037 Sum_probs=63.3
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceec
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 276 (301)
..+|...|...+......+ ++..++++....|-... -+...++++..|+..+... ......+...++..+++.++
T Consensus 42 ~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~ 120 (545)
T PRK08162 42 RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPA-MVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLI 120 (545)
T ss_pred eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchH-HHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEE
Confidence 3589999988777666554 67889998888776432 2234677888898888764 67889999999999999999
Q ss_pred CChHHHHHH
Q 046637 277 GAPTVLNMI 285 (301)
Q Consensus 277 ~~P~~~~~l 285 (301)
+.+.....+
T Consensus 121 ~~~~~~~~~ 129 (545)
T PRK08162 121 VDTEFAEVA 129 (545)
T ss_pred EccchhhHH
Confidence 887665543
No 231
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=64.51 E-value=20 Score=31.31 Aligned_cols=90 Identities=20% Similarity=0.186 Sum_probs=56.6
Q ss_pred CHHHHHHHHhhh-cCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 15 TPISFLERSAVV-YRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 15 ~~~~~l~~~~~~-~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
...+.|++..++ .+.+-++.+.+. ...+...|..+|+++||.|++-.-. +....-|+...|+.++.
T Consensus 25 ~~~~~fE~~~a~~~g~~~~~~~~sg----------t~Al~~al~~l~~~~gdeVi~p~~t---~~~~~~ai~~~G~~pv~ 91 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFGVKYAVAVSSG----------TSALHLALRALGLGPGDEVIVPAYT---FPATASAILWAGAEPVF 91 (363)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEESSH----------HHHHHHHHHHTTGGTTSEEEEESSS----THHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCh----------hHHHHHHHHhcCCCcCceEecCCCc---chHHHHHHHHhccEEEE
Confidence 445566665444 455556665542 3456666788999999999887544 45566777888998887
Q ss_pred cCCC-----CCHHHHHHHHHhcCceEEEEc
Q 046637 94 LNTR-----HDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 94 l~~~-----~~~~~l~~~l~~~~~~~vi~~ 118 (301)
++-+ .+.+.+...+..-. ++|+..
T Consensus 92 ~Di~~~~~~id~~~~~~~i~~~t-~ai~~~ 120 (363)
T PF01041_consen 92 VDIDPETLNIDPEALEKAITPKT-KAILVV 120 (363)
T ss_dssp E-BETTTSSB-HHHHHHHHHTTE-EEEEEE
T ss_pred EeccCCcCCcCHHHHHHHhccCc-cEEEEe
Confidence 7543 46788888875433 555554
No 232
>PLN02620 indole-3-acetic acid-amido synthetase
Probab=64.01 E-value=6.6 Score=36.81 Aligned_cols=31 Identities=13% Similarity=-0.145 Sum_probs=26.3
Q ss_pred CCCCCceEEEeccCCCC-CCCeeeechHHHHH
Q 046637 180 KDECDPIALNYTSGTTS-SPKGVICSHRGAYL 210 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG-~pK~v~~s~~~l~~ 210 (301)
..++.+.++..|||||| ++|-+.+|+..+-.
T Consensus 98 L~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~ 129 (612)
T PLN02620 98 LCSKPISEFLTSSGTSGGERKLMPTIEEELGR 129 (612)
T ss_pred cCCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence 45677788999999997 69999999998765
No 233
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=63.27 E-value=91 Score=29.03 Aligned_cols=97 Identities=10% Similarity=-0.077 Sum_probs=69.5
Q ss_pred CCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhh----CCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEe-eCC
Q 046637 183 CDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNE----MGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVC-QRT 257 (301)
Q Consensus 183 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~-~~~ 257 (301)
.+-..|+|-+-.++. -.+|...|..........+. . ++|++...+|..-- .....++++..|+-.+. .+.
T Consensus 24 ~~~~aii~~~e~~~~---~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe-~~~a~LA~~riGAI~~~vf~~ 98 (528)
T COG0365 24 PDDTAIIFDGEDGLF---RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPE-AVIALLATARIGAIPAVVSPG 98 (528)
T ss_pred CCceEEEEEcCCCCc---eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHH-HHHHHHHHHHcCCEEeecccC
Confidence 344556665544444 78999999887777666552 4 89999999997432 22345777777765554 468
Q ss_pred CCHHHHHHHHHhcCcceecCChHHHHH
Q 046637 258 VNAKEIFDNITRHKVTHFGGAPTVLNM 284 (301)
Q Consensus 258 ~~~~~~~~~i~~~~~t~~~~~P~~~~~ 284 (301)
|.++.+...+...++..+++....++.
T Consensus 99 f~~~al~~Ri~d~~~k~vit~d~~~~~ 125 (528)
T COG0365 99 LSAEAVADRIADLGPKVLIADDGTFRN 125 (528)
T ss_pred CCHHHHHHHHHccCCCEEEEecccccc
Confidence 999999999999999999877666654
No 234
>PLN00011 cysteine synthase
Probab=63.19 E-value=80 Score=27.18 Aligned_cols=90 Identities=14% Similarity=0.082 Sum_probs=56.9
Q ss_pred ccEEEECCeeeeHHHHHHHHHHHHHHHHhcC-CCCC-CEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHH
Q 046637 30 RPSVVYGDVQYTWKETHQRCVKLASGLAHLG-ISPG-DVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLL 107 (301)
Q Consensus 30 ~~al~~~~~~~Ty~el~~~~~~la~~L~~~g-v~~g-~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l 107 (301)
++++..++..=|..-=.+.+..+.....+.| +.+| +.|.. ...+-.-....++|...|..+..+-|...++.....+
T Consensus 33 ~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~-aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i 111 (323)
T PLN00011 33 RIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIE-ATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIIL 111 (323)
T ss_pred eEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEE-eCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH
Confidence 5666666543332222233333333444555 6787 55543 4445555666677888998766666666667888899
Q ss_pred HhcCceEEEEcCC
Q 046637 108 RHSEAKIIFVDYQ 120 (301)
Q Consensus 108 ~~~~~~~vi~~~~ 120 (301)
+..++++++++..
T Consensus 112 ~~~GA~V~~~~~~ 124 (323)
T PLN00011 112 RALGAEVHLTDQS 124 (323)
T ss_pred HHcCCEEEEECCC
Confidence 9999999999864
No 235
>PRK06178 acyl-CoA synthetase; Validated
Probab=63.04 E-value=68 Score=29.80 Aligned_cols=84 Identities=8% Similarity=-0.041 Sum_probs=63.0
Q ss_pred eechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecC
Q 046637 202 ICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 277 (301)
.+|+..+...+......+ ++.+++++...+|-... .....+.++..|+..+... ......+...+++.++..+++
T Consensus 58 ~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~ 136 (567)
T PRK06178 58 VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQ-FHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLA 136 (567)
T ss_pred eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcH-HHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 589999877766655544 56788888887775442 2334677888898887664 667889999999999999999
Q ss_pred ChHHHHHHH
Q 046637 278 APTVLNMIA 286 (301)
Q Consensus 278 ~P~~~~~l~ 286 (301)
.+.....+.
T Consensus 137 ~~~~~~~l~ 145 (567)
T PRK06178 137 LDQLAPVVE 145 (567)
T ss_pred ccchHHHHH
Confidence 888776554
No 236
>PRK07867 acyl-CoA synthetase; Validated
Probab=62.98 E-value=86 Score=28.96 Aligned_cols=84 Identities=15% Similarity=-0.054 Sum_probs=61.8
Q ss_pred eeechHHHHHHHHHHHHHhh----CCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCccee
Q 046637 201 VICSHRGAYLNSLAAALFNE----MGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHF 275 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~~----~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~ 275 (301)
..+|+..+...+..+...+. ..+++++...+|- ...-....++++..|+..+.++ ...++.+...+++.++..+
T Consensus 27 ~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n-~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l 105 (529)
T PRK07867 27 SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDN-TPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLV 105 (529)
T ss_pred cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCC-CHHHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEE
Confidence 45899999887777666553 4566777776663 2222334688899999988775 6678999999999999999
Q ss_pred cCChHHHHHH
Q 046637 276 GGAPTVLNMI 285 (301)
Q Consensus 276 ~~~P~~~~~l 285 (301)
++.......+
T Consensus 106 i~~~~~~~~~ 115 (529)
T PRK07867 106 LTESAHAELL 115 (529)
T ss_pred EECHhHHHHH
Confidence 9988666543
No 237
>PRK04940 hypothetical protein; Provisional
Probab=62.79 E-value=42 Score=26.14 Aligned_cols=43 Identities=7% Similarity=0.054 Sum_probs=30.3
Q ss_pred CEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHH-HHHHHH
Q 046637 65 DVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAM-VSVLLR 108 (301)
Q Consensus 65 ~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~-l~~~l~ 108 (301)
+.+++++.+-=-+++..+|. +.|+..|.+||...+.+ +...+.
T Consensus 60 ~~~~liGSSLGGyyA~~La~-~~g~~aVLiNPAv~P~~~L~~~ig 103 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGF-LCGIRQVIFNPNLFPEENMEGKID 103 (180)
T ss_pred CCcEEEEeChHHHHHHHHHH-HHCCCEEEECCCCChHHHHHHHhC
Confidence 35777777655566666665 68899999999988754 555553
No 238
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=62.45 E-value=90 Score=27.39 Aligned_cols=67 Identities=19% Similarity=0.125 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecC--C---CCCHHHHHHHHHh---cCceEEEEc
Q 046637 49 CVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLN--T---RHDSAMVSVLLRH---SEAKIIFVD 118 (301)
Q Consensus 49 ~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~--~---~~~~~~l~~~l~~---~~~~~vi~~ 118 (301)
...+...+...++++||.|.+-.+.. ....-++...|+.++.++ + ....+++...++. -++++|+..
T Consensus 54 t~al~~~l~al~~~~Gd~Viv~~~~~---~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~ 128 (380)
T TIGR03588 54 TSALHIACLALGVGPGDRVWTTPITF---VATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPV 128 (380)
T ss_pred HHHHHHHHHHcCCCCCCEEEeCCcch---HHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEe
Confidence 34455556666889999987776543 333455667787666544 3 2467888888863 355666543
No 239
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=62.36 E-value=51 Score=30.64 Aligned_cols=80 Identities=13% Similarity=-0.064 Sum_probs=59.1
Q ss_pred eeechHHHHHHHHHHHHHh----hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCccee
Q 046637 201 VICSHRGAYLNSLAAALFN----EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHF 275 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~----~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~ 275 (301)
..+|...|...+......+ ++.++|++...+|-.- .-....++++..|+..+... ......+...+++.++..+
T Consensus 48 ~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~-e~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~ 126 (562)
T PRK12492 48 VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVL-QYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARAL 126 (562)
T ss_pred ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCH-HHHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEE
Confidence 4689999877766655544 5788999888776533 22334678888888888664 5678899999999999998
Q ss_pred cCChHH
Q 046637 276 GGAPTV 281 (301)
Q Consensus 276 ~~~P~~ 281 (301)
.+.+..
T Consensus 127 i~~~~~ 132 (562)
T PRK12492 127 VYLNMF 132 (562)
T ss_pred Eecccc
Confidence 876543
No 240
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=62.17 E-value=95 Score=30.05 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=56.4
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC--CHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN--VPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKII 115 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (301)
-.+|.+.+...+..+.. ..++.++|++....|- ...+...+++.+..|+..+..+.......+-..+++.++.++
T Consensus 383 v~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~ 459 (718)
T PRK08043 383 VVHSHKSLLANVEQIKT---IADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVL 459 (718)
T ss_pred EEEcHHHHHHHHHHHHH---hhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEE
Confidence 46899888776665543 3478899998887775 233444577888889888766544455667778888888887
Q ss_pred EEcCCc
Q 046637 116 FVDYQL 121 (301)
Q Consensus 116 i~~~~~ 121 (301)
..-...
T Consensus 460 ~~~p~~ 465 (718)
T PRK08043 460 FGTSTF 465 (718)
T ss_pred EchHHH
Confidence 765443
No 241
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=61.85 E-value=93 Score=26.93 Aligned_cols=61 Identities=20% Similarity=0.132 Sum_probs=49.9
Q ss_pred CCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCC
Q 046637 60 GISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120 (301)
Q Consensus 60 gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (301)
-+.||..+.|-.-++=--+...+.|..-|.-++..=|..-+.|-+.+|+..++++|.++.+
T Consensus 99 ~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a 159 (362)
T KOG1252|consen 99 LITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPA 159 (362)
T ss_pred CccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChH
Confidence 4789988888777766667777778888888887778777788889999999999999854
No 242
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=61.79 E-value=81 Score=28.64 Aligned_cols=85 Identities=12% Similarity=0.071 Sum_probs=60.8
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH-HHHHHHHHhhhccceeeecCCC--CCHHHHHHHHHhcCceE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP-AMYELHFGVPMAGAVLCTLNTR--HDSAMVSVLLRHSEAKI 114 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~-~~~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 114 (301)
-.+|++.+...+..+... .++..++++....+-+. ..+..+++++..|+..+..++. .....+.+.++..++..
T Consensus 159 v~~s~~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 235 (502)
T TIGR01734 159 VQISHDNLVSFTNWMLAD---FPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNV 235 (502)
T ss_pred EEEecHHHHHHHHHHHHh---CCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeE
Confidence 468998887766554433 57888888777665543 2345677888999988877654 46688889999999998
Q ss_pred EEEcCCchhhH
Q 046637 115 IFVDYQLLPIA 125 (301)
Q Consensus 115 vi~~~~~~~~~ 125 (301)
+.........+
T Consensus 236 ~~~~p~~~~~~ 246 (502)
T TIGR01734 236 WVSTPSFVDMC 246 (502)
T ss_pred EEEChhHHHHH
Confidence 88876665443
No 243
>PRK07638 acyl-CoA synthetase; Validated
Probab=61.59 E-value=78 Score=28.69 Aligned_cols=85 Identities=8% Similarity=-0.019 Sum_probs=60.2
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA-MYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIF 116 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (301)
-.+|.+.+...+.... ...+++++|++....+-... ++...+..+..|+..+.. +..+++++...+++.++.++.
T Consensus 161 v~~s~~~~~~~~~~~~---~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~-~~~~~~~~~~~i~~~~~t~~~ 236 (487)
T PRK07638 161 FLRAQQSWLHSFDCNV---HDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLM-RKFIPNQVLDKLETENISVMY 236 (487)
T ss_pred EEEecHHHHHHHHHHH---HhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEc-CCCCHHHHHHHHHHcCCeEEE
Confidence 3678887766554433 34578899998876655332 345566677788877755 567889999999999999999
Q ss_pred EcCCchhhHH
Q 046637 117 VDYQLLPIAQ 126 (301)
Q Consensus 117 ~~~~~~~~~~ 126 (301)
........+.
T Consensus 237 ~~P~~~~~l~ 246 (487)
T PRK07638 237 TVPTMLESLY 246 (487)
T ss_pred eCcHHHHHHH
Confidence 8776655443
No 244
>PRK06382 threonine dehydratase; Provisional
Probab=61.46 E-value=93 Score=27.82 Aligned_cols=49 Identities=6% Similarity=-0.033 Sum_probs=36.4
Q ss_pred CHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch
Q 046637 74 VPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL 122 (301)
Q Consensus 74 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (301)
+=.-....++|...|..+..+-|...+......++..+++++++.....
T Consensus 82 GN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~~~~ 130 (406)
T PRK06382 82 GNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGRDYD 130 (406)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECCCHH
Confidence 3344455678888998777666766667778889999999999886543
No 245
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=61.23 E-value=16 Score=28.73 Aligned_cols=33 Identities=30% Similarity=0.581 Sum_probs=29.1
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAAL 70 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 70 (301)
..+||.++.+.+..+|....+.|.+|.-.|++.
T Consensus 5 ~~vSw~~I~~~~~~lA~kI~~s~~~PDvIiaia 37 (192)
T COG2236 5 LYVSWEEIHRLCRALAEKIRASGFKPDVIVAIA 37 (192)
T ss_pred EEecHHHHHHHHHHHHHHHHHcCCCCCEEEEEc
Confidence 468999999999999999999999998666654
No 246
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=61.14 E-value=90 Score=29.64 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=67.5
Q ss_pred hhcCCccEEEE---------CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH-HHhhhccceeeec
Q 046637 25 VVYRDRPSVVY---------GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELH-FGVPMAGAVLCTL 94 (301)
Q Consensus 25 ~~~~~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~-lA~~~~G~~~v~l 94 (301)
...||..|.+. .|..+||+.+...+..+.+.+. -++++|++.-++|-.=-+--++ .++...|.+.+..
T Consensus 187 ~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~--~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~ 264 (613)
T COG1022 187 PPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLP--PIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLF 264 (613)
T ss_pred CCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCC--CCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEe
Confidence 34677777654 1258999999999999877765 4889999999999643332222 4444444444433
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEcCCchhhH
Q 046637 95 NTRHDSAMVSVLLRHSEAKIIFVDYQLLPIA 125 (301)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (301)
..+...+..-++..+|.+++.-...++.+
T Consensus 265 --~~~~~~~~~dl~~~rPt~m~~VPRvwE~i 293 (613)
T COG1022 265 --KEDPRTLLEDLKEVRPTVMIGVPRVWEKV 293 (613)
T ss_pred --cCCHHHHHHHHHHhCCeEEeechHHHHHH
Confidence 45678889999999999999876655544
No 247
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=60.99 E-value=23 Score=24.92 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 50 VKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 50 ~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
..+...+...|+.+++.|.+++.++.....+.+.+...|..
T Consensus 64 ~~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~ 104 (118)
T cd01449 64 EELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYK 104 (118)
T ss_pred HHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCC
Confidence 45556677889999999999999888777777778888863
No 248
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=59.95 E-value=1e+02 Score=27.23 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=30.0
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
+++||.|++..+.-......+-.+...|+.+...++ ..+++...++..+.++|+++.
T Consensus 89 l~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~~--d~~~l~~~i~~~~tklV~ie~ 145 (385)
T PRK08574 89 LKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAYP--STEDIIEAIKEGRTKLVFIET 145 (385)
T ss_pred hCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEECC--CHHHHHHhcCccCceEEEEEC
Confidence 567777776655433332222122445655544443 256666666544566776653
No 249
>PRK06381 threonine synthase; Validated
Probab=59.85 E-value=1.1e+02 Score=26.15 Aligned_cols=93 Identities=13% Similarity=0.044 Sum_probs=57.9
Q ss_pred hhhcC-CccEEEECCeee--eHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCH
Q 046637 24 AVVYR-DRPSVVYGDVQY--TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDS 100 (301)
Q Consensus 24 ~~~~~-~~~al~~~~~~~--Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~ 100 (301)
.+..+ .++++..++..- |++. +.+......+.+.|. ++| +....+-.-..+.++|...|..+..+-|...+
T Consensus 25 ~~~~G~~~i~~K~E~~nptGS~K~--R~a~~~l~~a~~~g~---~~l-v~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~ 98 (319)
T PRK06381 25 EEELGLRKIYLKFEGANPTGTQKD--RIAEAHVRRAMRLGY---SGI-TVGTCGNYGASIAYFARLYGLKAVIFIPRSYS 98 (319)
T ss_pred HHhcCCceEEEEecCCCCccCcHH--HHHHHHHHHHHHcCC---CEE-EEeCCcHHHHHHHHHHHHcCCcEEEEECCCCC
Confidence 33343 468888876433 3332 223333333455553 344 33445656666777888889876666566566
Q ss_pred HHHHHHHHhcCceEEEEcCCch
Q 046637 101 AMVSVLLRHSEAKIIFVDYQLL 122 (301)
Q Consensus 101 ~~l~~~l~~~~~~~vi~~~~~~ 122 (301)
+.....++..++++++++....
T Consensus 99 ~~~~~~l~~~GA~V~~~~~~~~ 120 (319)
T PRK06381 99 NSRVKEMEKYGAEIIYVDGKYE 120 (319)
T ss_pred HHHHHHHHHcCCEEEEcCCCHH
Confidence 6777899999999999987643
No 250
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=59.58 E-value=94 Score=30.41 Aligned_cols=101 Identities=9% Similarity=0.015 Sum_probs=70.7
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh------hCCCC-----------CEEEEeccchhhhhhH-HH
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN------EMGLM-----------PTYLWCVPMFHCNGWC-LT 242 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~------~~~~~-----------~~~l~~~p~~h~~g~~-~~ 242 (301)
.++.++++.... |.+ -..+|+..+...+......+ ++.++ |++....+-. ..|. ..
T Consensus 74 ~p~~~Al~~~~~---g~~-~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~--~ew~~~~ 147 (746)
T PTZ00342 74 NNNKIAIVEHSC---GEP-QNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNS--INWLVAD 147 (746)
T ss_pred cCCceeEeccCC---CCC-ceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCC--HHHHHHH
Confidence 356666653211 211 24689998887766655443 46666 7777766643 3444 46
Q ss_pred HHHHHhCCeEEee-CCCCHHHHHHHHHhcCcceecCChHHHHHHHc
Q 046637 243 WAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVTHFGGAPTVLNMIAN 287 (301)
Q Consensus 243 ~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 287 (301)
++++..|+..|.+ +.+.++.+...++..++.++++.+..+..+.+
T Consensus 148 lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~ 193 (746)
T PTZ00342 148 LACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLE 193 (746)
T ss_pred HHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHH
Confidence 8888899888876 57899999999999999999998888777664
No 251
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=59.23 E-value=1.1e+02 Score=25.86 Aligned_cols=92 Identities=16% Similarity=0.119 Sum_probs=58.9
Q ss_pred cCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHH
Q 046637 27 YRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLG-ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSV 105 (301)
Q Consensus 27 ~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 105 (301)
.+.++++..++..-|-+-=.+.+..+.....+.| +.+|+.|.- ...+-.-....++|...|..+..+-|...++....
T Consensus 21 ~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~-aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~ 99 (290)
T TIGR01138 21 NGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIE-ATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKA 99 (290)
T ss_pred CCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEE-ECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHH
Confidence 3346777777654443222333333334444555 477876655 44445555666677789987776666666677778
Q ss_pred HHHhcCceEEEEcC
Q 046637 106 LLRHSEAKIIFVDY 119 (301)
Q Consensus 106 ~l~~~~~~~vi~~~ 119 (301)
.++..++++++++.
T Consensus 100 ~~~~~GA~v~~v~~ 113 (290)
T TIGR01138 100 AMRAYGAELILVTK 113 (290)
T ss_pred HHHHcCCEEEEeCC
Confidence 99999999999875
No 252
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=59.17 E-value=82 Score=28.75 Aligned_cols=84 Identities=12% Similarity=-0.098 Sum_probs=61.3
Q ss_pred eechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecC
Q 046637 202 ICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 277 (301)
.+|...+...+...... .++.+++++....|-.- -.+...++++..|+..+... ......+...+++.+++.+++
T Consensus 11 ~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~-~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 11 RRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDF-AFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 57888887666555544 46778999888877533 22334677788888888774 567889999999999999998
Q ss_pred ChHHHHHHH
Q 046637 278 APTVLNMIA 286 (301)
Q Consensus 278 ~P~~~~~l~ 286 (301)
.......+.
T Consensus 90 ~~~~~~~~~ 98 (509)
T PRK12406 90 HADLLHGLA 98 (509)
T ss_pred ccchhhhhh
Confidence 776666543
No 253
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=57.91 E-value=66 Score=25.21 Aligned_cols=97 Identities=11% Similarity=0.115 Sum_probs=54.9
Q ss_pred CcccccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Q 046637 2 EGMIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELH 81 (301)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 81 (301)
+.|++++..... ..+.+..+++.-..-+.+.+-..+..+..+...++ +.+. .+ +.+.+++.+-=-+++..
T Consensus 6 HGF~Ssp~S~Ka----~~l~~~~~~~~~~~~~~~p~l~~~p~~a~~~l~~~---i~~~--~~-~~~~liGSSlGG~~A~~ 75 (187)
T PF05728_consen 6 HGFNSSPQSFKA----QALKQYFAEHGPDIQYPCPDLPPFPEEAIAQLEQL---IEEL--KP-ENVVLIGSSLGGFYATY 75 (187)
T ss_pred cCCCCCCCCHHH----HHHHHHHHHhCCCceEECCCCCcCHHHHHHHHHHH---HHhC--CC-CCeEEEEEChHHHHHHH
Confidence 455554444332 34444444444334444555555666665555444 3332 12 22777777655667666
Q ss_pred HHhhhccceeeecCCCCCHH-HHHHHHHh
Q 046637 82 FGVPMAGAVLCTLNTRHDSA-MVSVLLRH 109 (301)
Q Consensus 82 lA~~~~G~~~v~l~~~~~~~-~l~~~l~~ 109 (301)
+|. +.|...|.++|...+. .+...+..
T Consensus 76 La~-~~~~~avLiNPav~p~~~l~~~iG~ 103 (187)
T PF05728_consen 76 LAE-RYGLPAVLINPAVRPYELLQDYIGE 103 (187)
T ss_pred HHH-HhCCCEEEEcCCCCHHHHHHHhhCc
Confidence 665 6689999999998764 45555544
No 254
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=57.56 E-value=64 Score=29.19 Aligned_cols=92 Identities=11% Similarity=0.009 Sum_probs=58.0
Q ss_pred CCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHH
Q 046637 28 RDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGI-SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVL 106 (301)
Q Consensus 28 ~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 106 (301)
+.++++..++..-|.+-=.+.+..+-....+.|. .+|+.|.-. ..+-.-....++|...|..+..+-|...+++-...
T Consensus 25 ~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~-ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~ 103 (454)
T TIGR01137 25 KCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEP-TSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDV 103 (454)
T ss_pred CceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHH
Confidence 3467777766433321112223333333444554 777765544 44555566677888899877766666666778889
Q ss_pred HHhcCceEEEEcCC
Q 046637 107 LRHSEAKIIFVDYQ 120 (301)
Q Consensus 107 l~~~~~~~vi~~~~ 120 (301)
++..++++++++..
T Consensus 104 ~~~~GA~v~~~~~~ 117 (454)
T TIGR01137 104 LKALGAEIVRTPTA 117 (454)
T ss_pred HHHCCCEEEEcCCc
Confidence 99999999999753
No 255
>PLN02550 threonine dehydratase
Probab=57.32 E-value=1.8e+02 Score=27.63 Aligned_cols=98 Identities=12% Similarity=0.062 Sum_probs=58.2
Q ss_pred HHHhhhcCCccEEEECCeee--eHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCC
Q 046637 21 ERSAVVYRDRPSVVYGDVQY--TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH 98 (301)
Q Consensus 21 ~~~~~~~~~~~al~~~~~~~--Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~ 98 (301)
....+..+.++++..++.+- ||+. .-..+++. .|......+| .|.-...| ......++|.+.|..+..+=|..
T Consensus 116 ~~LS~~~g~~IylK~E~lqptGSFK~-RGA~n~I~-~L~~e~~~~G-VV~aSaGN--hAqgvA~aA~~lGika~IvmP~~ 190 (591)
T PLN02550 116 KKLSERLGVKVLLKREDLQPVFSFKL-RGAYNMMA-KLPKEQLDKG-VICSSAGN--HAQGVALSAQRLGCDAVIAMPVT 190 (591)
T ss_pred HHhhHhhCCEEEEEEcCCCCCCcHHH-HHHHHHHH-HHHHhcCCCC-EEEECCCH--HHHHHHHHHHHcCCCEEEEECCC
Confidence 33444455667777777443 3443 22222232 2333344556 44433333 44455667888888766666666
Q ss_pred CHHHHHHHHHhcCceEEEEcCCchh
Q 046637 99 DSAMVSVLLRHSEAKIIFVDYQLLP 123 (301)
Q Consensus 99 ~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (301)
.+..-...++..+++++++.+...+
T Consensus 191 tp~~Kv~~~r~~GAeVvl~g~~~de 215 (591)
T PLN02550 191 TPEIKWQSVERLGATVVLVGDSYDE 215 (591)
T ss_pred CCHHHHHHHHHcCCEEEEeCCCHHH
Confidence 6677788889999999999865444
No 256
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=57.30 E-value=32 Score=23.60 Aligned_cols=53 Identities=4% Similarity=-0.172 Sum_probs=39.4
Q ss_pred eeeeHHHHHHHH----HHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 38 VQYTWKETHQRC----VKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 38 ~~~Ty~el~~~~----~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
..+.+.++.... +.+...+...++.+++.|.+++.++.....+.+.+...|..
T Consensus 36 ~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~ 92 (106)
T cd01519 36 INIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSKAAAELARSLGYE 92 (106)
T ss_pred EEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHHHHHHHHHHHHcCCc
Confidence 356777765432 35666676778888999999999988877777888888864
No 257
>PRK13382 acyl-CoA synthetase; Provisional
Probab=57.04 E-value=1.2e+02 Score=28.11 Aligned_cols=82 Identities=12% Similarity=-0.108 Sum_probs=60.0
Q ss_pred eechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecC
Q 046637 202 ICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 277 (301)
.+|...+...+......+ ++.+++++...++-.-. -+...++++..|+..+... ......+...+++.+++.+++
T Consensus 68 ~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 146 (537)
T PRK13382 68 TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRG-FVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIY 146 (537)
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHH-HHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEE
Confidence 688888877666655544 67788998888774332 2334677888899888775 567788999999999999988
Q ss_pred ChHHHHH
Q 046637 278 APTVLNM 284 (301)
Q Consensus 278 ~P~~~~~ 284 (301)
.......
T Consensus 147 ~~~~~~~ 153 (537)
T PRK13382 147 DEEFSAT 153 (537)
T ss_pred chhhHHH
Confidence 6655443
No 258
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=56.91 E-value=1.8e+02 Score=27.51 Aligned_cols=102 Identities=9% Similarity=-0.132 Sum_probs=67.9
Q ss_pred CCCCceEEEec--cCCCCCCCeeeechHHHHHHHHHHHHHh--hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-
Q 046637 181 DECDPIALNYT--SGTTSSPKGVICSHRGAYLNSLAAALFN--EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ- 255 (301)
Q Consensus 181 ~~~~~~~i~~T--SGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~- 255 (301)
.++.++++... .+++|. ...+|+..+...+......+ .+.++|++...++-... -+...++++..|+..+.+
T Consensus 47 ~~~~~a~~~~~~~~~~~g~--~~~~Ty~el~~~~~~lA~~L~~~~~~gd~V~l~~~n~~e-~~~~~lA~~~aG~v~vpl~ 123 (612)
T PRK12476 47 VGDTVAYRYLDHSHSAAGC--AVELTWTQLGVRLRAVGARLQQVAGPGDRVAILAPQGID-YVAGFFAAIKAGTIAVPLF 123 (612)
T ss_pred CCCceEEEEEccCCCCCCc--ceEEeHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCChh-HHHHHHHHHHcCceeEecC
Confidence 35566655432 112232 34689999887766655544 25788998888876532 233467888889888766
Q ss_pred C-CCC--HHHHHHHHHhcCcceecCChHHHHHH
Q 046637 256 R-TVN--AKEIFDNITRHKVTHFGGAPTVLNMI 285 (301)
Q Consensus 256 ~-~~~--~~~~~~~i~~~~~t~~~~~P~~~~~l 285 (301)
+ ... ++.+...++..++..+++.+.....+
T Consensus 124 ~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~ 156 (612)
T PRK12476 124 APELPGHAERLDTALRDAEPTVVLTTTAAAEAV 156 (612)
T ss_pred CCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHH
Confidence 2 222 67888999999999999887766543
No 259
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=56.80 E-value=79 Score=23.49 Aligned_cols=87 Identities=11% Similarity=0.015 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhc---CCCCCCEEEEE-cCCCHH-HHHHHHHhhhccceeeecCCCC-------CHHHHHHHHHhcC
Q 046637 44 ETHQRCVKLASGLAHL---GISPGDVVAAL-APNVPA-MYELHFGVPMAGAVLCTLNTRH-------DSAMVSVLLRHSE 111 (301)
Q Consensus 44 el~~~~~~la~~L~~~---gv~~g~~V~i~-~~n~~~-~~~~~lA~~~~G~~~v~l~~~~-------~~~~l~~~l~~~~ 111 (301)
.+.+.+..+-....+. ..-+|..|+++ ..+|.. -...-.|+.++|+.++.+++.. +.++....+..+
T Consensus 16 ~ll~~A~~lk~~~~~~~~~~~l~gk~v~~lF~e~StRTR~SFe~A~~~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~- 94 (142)
T PF02729_consen 16 ALLDLAKELKAAPKKGKPSQLLKGKTVALLFFEPSTRTRLSFEAAANRLGGHVIYLDPSTSSLGKGESLEDTARVLSRY- 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTTTTCEEEEEESS--HHHHHHHHHHHHHTTCEEEEEETTTSSTTTSSEHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhhcCCCcccCCCCEEEEEecCCCchhhhhHHHhhhcceeEEEEECcccccCcCCCCHHHHHHHHHHh-
Confidence 3445555555544433 34557777665 555655 5666788999999999887543 557888899999
Q ss_pred ceEEEEcCCchhhHHHHHHH
Q 046637 112 AKIIFVDYQLLPIAQGAFEI 131 (301)
Q Consensus 112 ~~~vi~~~~~~~~~~~~~~~ 131 (301)
++++++-......+.+..+.
T Consensus 95 ~D~iv~R~~~~~~~~~~a~~ 114 (142)
T PF02729_consen 95 VDAIVIRHPSHGALEELAEH 114 (142)
T ss_dssp CSEEEEEESSHHHHHHHHHH
T ss_pred hheEEEEeccchHHHHHHHh
Confidence 88888876666666655443
No 260
>PRK09192 acyl-CoA synthetase; Validated
Probab=56.47 E-value=1.3e+02 Score=28.07 Aligned_cols=86 Identities=7% Similarity=-0.158 Sum_probs=62.2
Q ss_pred eeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCC-C-------CHHHHHHHHH
Q 046637 200 GVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRT-V-------NAKEIFDNIT 268 (301)
Q Consensus 200 ~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~-~-------~~~~~~~~i~ 268 (301)
.-.+|...+...+......+ ++.+++++...++.. ..-+...++++..|+..+.+.. + .++.+...++
T Consensus 47 ~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~-~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~ 125 (579)
T PRK09192 47 EEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETD-GDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLA 125 (579)
T ss_pred EEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc-hhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHH
Confidence 46799999877666655544 678899988888863 2333446788889998888742 1 1578889999
Q ss_pred hcCcceecCChHHHHHHH
Q 046637 269 RHKVTHFGGAPTVLNMIA 286 (301)
Q Consensus 269 ~~~~t~~~~~P~~~~~l~ 286 (301)
+.++..+++.......+.
T Consensus 126 ~~~~~~il~~~~~~~~~~ 143 (579)
T PRK09192 126 SAQPAAIITPDELLPWVN 143 (579)
T ss_pred hcCCCEEEeChHHHHHHH
Confidence 999999988876654443
No 261
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=56.25 E-value=64 Score=28.44 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCC--C---CCHHHHHHHHHhcCceEEE
Q 046637 50 VKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNT--R---HDSAMVSVLLRHSEAKIIF 116 (301)
Q Consensus 50 ~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~--~---~~~~~l~~~l~~~~~~~vi 116 (301)
..+...|...++++||.|.+..+. +.....++...|+.++.++. . ...+.+...+.. +.++|+
T Consensus 59 ~al~lal~al~~~~Gd~Viv~~~~---~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~-~tkav~ 126 (379)
T PRK11658 59 AGMHITLMALGIGPGDEVITPSLT---WVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITP-RTKAII 126 (379)
T ss_pred HHHHHHHHHcCCCCCCEEEECCCc---HHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhccc-CCeEEE
Confidence 444445666778899988765543 33334455667887766543 2 356777777743 456665
No 262
>PRK12582 acyl-CoA synthetase; Provisional
Probab=56.20 E-value=75 Score=30.10 Aligned_cols=79 Identities=9% Similarity=-0.200 Sum_probs=57.0
Q ss_pred eeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCC-----HHHHHHHHHhc
Q 046637 200 GVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVN-----AKEIFDNITRH 270 (301)
Q Consensus 200 ~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~-----~~~~~~~i~~~ 270 (301)
.-.+|+..+...+......+ ++.++|++...++-. .--....++++..|+..+.+. .++ ...+...++..
T Consensus 78 ~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~-~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~ 156 (624)
T PRK12582 78 WRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNS-IEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLV 156 (624)
T ss_pred eEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCC-HHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhc
Confidence 35789999988777666544 678899998888733 222334678888898888774 333 37888889999
Q ss_pred CcceecCCh
Q 046637 271 KVTHFGGAP 279 (301)
Q Consensus 271 ~~t~~~~~P 279 (301)
++..+++..
T Consensus 157 ~~~~vi~~~ 165 (624)
T PRK12582 157 KPRVVFAQS 165 (624)
T ss_pred CCcEEEecC
Confidence 988887653
No 263
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=55.81 E-value=1.1e+02 Score=25.82 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=35.1
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCC----------CCCHHHHHHHHHh-cCceEEEEc
Q 046637 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNT----------RHDSAMVSVLLRH-SEAKIIFVD 118 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~----------~~~~~~l~~~l~~-~~~~~vi~~ 118 (301)
+++||.|.+.-+.... .+-++...|+.++.+.+ ..+.+++...++. .++++++..
T Consensus 96 ~~~gd~Vlv~~~~h~s---~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~ 161 (294)
T cd00615 96 CGPGDKILIDRNCHKS---VINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVIT 161 (294)
T ss_pred CCCCCEEEEeCCchHH---HHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEE
Confidence 5789988877554333 23445567877666644 2467888888865 467765554
No 264
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=55.67 E-value=16 Score=23.38 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=14.9
Q ss_pred HHHHHHhcCCCCCCEEEEE
Q 046637 52 LASGLAHLGISPGDVVAAL 70 (301)
Q Consensus 52 la~~L~~~gv~~g~~V~i~ 70 (301)
+-..|.+.|+++||.|-|.
T Consensus 45 v~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHHcCCCCCCEEEEc
Confidence 3345788899999999874
No 265
>PRK05939 hypothetical protein; Provisional
Probab=55.38 E-value=1.5e+02 Score=26.41 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=34.1
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
+++||.|.+...--......+-++.+.|+.+..++.. ..+++...+. -+.++|+++.
T Consensus 83 l~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~-d~e~l~~~l~-~~tklV~ves 139 (397)
T PRK05939 83 LRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT-DVQNVAAAIR-PNTRMVFVET 139 (397)
T ss_pred cCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC-CHHHHHHhCC-CCCeEEEEEC
Confidence 6889988775432222222223345678877777653 5677777774 3567777754
No 266
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=55.11 E-value=1.1e+02 Score=28.16 Aligned_cols=82 Identities=12% Similarity=-0.113 Sum_probs=59.7
Q ss_pred eechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecC
Q 046637 202 ICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 277 (301)
.+|+..+...+......+ ++..++++...++-.-- -+...++++..|+..+... ...+..+...+++.++..++.
T Consensus 42 ~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~-~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~ 120 (542)
T PRK07786 42 TTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTE-FVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVT 120 (542)
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEE
Confidence 689999877766655444 57788888777664322 2334677888898888774 567889999999999999988
Q ss_pred ChHHHHH
Q 046637 278 APTVLNM 284 (301)
Q Consensus 278 ~P~~~~~ 284 (301)
.+.....
T Consensus 121 ~~~~~~~ 127 (542)
T PRK07786 121 EAALAPV 127 (542)
T ss_pred ccchHHH
Confidence 7765544
No 267
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=54.70 E-value=1.6e+02 Score=27.34 Aligned_cols=93 Identities=10% Similarity=-0.063 Sum_probs=66.2
Q ss_pred CCCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC
Q 046637 180 KDECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR 256 (301)
Q Consensus 180 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~ 256 (301)
..++.++++...-+. .+|+..+...+......+ .+.++|++...+|-..-+ +...++++..|+..+.+.
T Consensus 23 ~~~~~~a~~~~~~~~-------~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~-~~~~~a~~~~Gav~vpln 94 (534)
T COG0318 23 RNPDRPALIFLGRGG-------RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEF-LIAFLAALRAGAVAVPLN 94 (534)
T ss_pred hCCCceEEEEcCCCc-------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHhcCEEEeecC
Confidence 344555555543222 899999988877766555 355799988888765422 234677888898888885
Q ss_pred -CCCHHHHHHHHHhcCcceecCChH
Q 046637 257 -TVNAKEIFDNITRHKVTHFGGAPT 280 (301)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P~ 280 (301)
...+..+...++..++..++....
T Consensus 95 ~~~~~~~l~~~l~~~~~~~~~~~~~ 119 (534)
T COG0318 95 PRLTPRELAYILNDAGAKVLITSAE 119 (534)
T ss_pred cccCHHHHHHHHHhcCCeEEEEccc
Confidence 457888888898888988888765
No 268
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=54.66 E-value=74 Score=22.48 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=39.7
Q ss_pred HHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCC---chhhHHHHHHHhcc
Q 046637 80 LHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ---LLPIAQGAFEILSK 134 (301)
Q Consensus 80 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~---~~~~~~~~~~~~~~ 134 (301)
....+...|.-++.+.+..+.+++...+.+.+|++|..+.. ....+.+..+.+.+
T Consensus 19 ~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~ 76 (119)
T cd02067 19 VARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKE 76 (119)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHH
Confidence 33344458888889999999999999999999999888643 33444454454443
No 269
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=54.66 E-value=1.7e+02 Score=26.57 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=34.8
Q ss_pred CCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCC-----CCHHHHHHHHHhcCceEEEEc
Q 046637 60 GISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTR-----HDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 60 gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~~ 118 (301)
++++||.|++-.+..+ ....++...|+.+++++.. ...+.+...+.. +.++|+..
T Consensus 107 ~~~pGd~VIv~~~t~~---a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~-~tkaVi~~ 166 (438)
T PRK15407 107 ALKPGDEVITVAAGFP---TTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSP-KTKAIMIA 166 (438)
T ss_pred CCCCCCEEEECCCCcH---HHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCc-CCeEEEEe
Confidence 7899999887665543 3344555678877665432 356777776643 55666654
No 270
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=54.53 E-value=56 Score=30.19 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=57.1
Q ss_pred eeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCHH-HHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEE
Q 046637 38 VQYTWKETHQRCVKLASGLA-HLGISPGDVVAALAPNVPA-MYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKII 115 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (301)
-.+|...+.... .+..+. ..++.++|++..+.|-.-. .....++++..|+..+...+....+.+..++++.++..+
T Consensus 194 v~~s~~~~~~~~--~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~ 271 (539)
T PRK07008 194 ALYSHRSTVLHA--YGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFS 271 (539)
T ss_pred EEEecHHHHHHH--HHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEE
Confidence 357776664322 222222 3578889988877654221 233346777889888777777888999999999999998
Q ss_pred EEcCCchhhH
Q 046637 116 FVDYQLLPIA 125 (301)
Q Consensus 116 i~~~~~~~~~ 125 (301)
.........+
T Consensus 272 ~~~P~~~~~l 281 (539)
T PRK07008 272 AGVPTVWLGL 281 (539)
T ss_pred EechHHHHHH
Confidence 8766555443
No 271
>PLN02409 serine--glyoxylate aminotransaminase
Probab=54.41 E-value=1.2e+02 Score=26.90 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=13.0
Q ss_pred hccceeeecCCCCCHHHHHHHHHhcCceEEEE
Q 046637 86 MAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFV 117 (301)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 117 (301)
.-|-.++..++......+..+.+..+.+++..
T Consensus 82 ~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v 113 (401)
T PLN02409 82 SPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVV 113 (401)
T ss_pred CCCCEEEEeCCCchhHHHHHHHHHcCCceEEE
Confidence 33433333333333333334444444444444
No 272
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=54.16 E-value=33 Score=29.53 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=44.1
Q ss_pred eeeHHHHHHH------HHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeec
Q 046637 39 QYTWKETHQR------CVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL 94 (301)
Q Consensus 39 ~~Ty~el~~~------~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (301)
.+.|.++... .+.+...+.+.|+.+++.|.++|.++.....+++++..+|..-+-+
T Consensus 238 nip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~ 299 (320)
T PLN02723 238 CVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPV 299 (320)
T ss_pred ccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeE
Confidence 4667776432 4667777888899999999999999999888999999999754433
No 273
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=53.96 E-value=86 Score=28.33 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=32.7
Q ss_pred CCCCCEEEEEcCCCHHHHHH--HHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 61 ISPGDVVAALAPNVPAMYEL--HFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~~~--~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
+++||.|.+..+ ....... -..+.+.|+.+..++.....+++...++. +.++|+++.
T Consensus 97 l~~GD~VI~~~~-~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~-~Tk~I~~e~ 155 (432)
T PRK06702 97 CSSGDHLLCSST-VYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAND-KTKLVYAES 155 (432)
T ss_pred cCCCCEEEECCC-chHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCc-CCeEEEEEc
Confidence 577887665333 2221112 22245677777777766666777777753 556666653
No 274
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=53.72 E-value=1.4e+02 Score=27.75 Aligned_cols=80 Identities=10% Similarity=0.007 Sum_probs=58.5
Q ss_pred eeechHHHHHHHHHHHHHh----hCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcce
Q 046637 201 VICSHRGAYLNSLAAALFN----EMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTH 274 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~----~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~ 274 (301)
..+|...+..........+ ++..++++....+-. ..+. ..++++..|+..+.++ ...+..+.+.+++.+++.
T Consensus 47 ~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 124 (560)
T PRK08974 47 EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNL--LQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKA 124 (560)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCC--HHHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceE
Confidence 3678888877766655544 567888888776643 3333 4677888898888774 567888999999999999
Q ss_pred ecCChHHH
Q 046637 275 FGGAPTVL 282 (301)
Q Consensus 275 ~~~~P~~~ 282 (301)
+.+.+...
T Consensus 125 ii~~~~~~ 132 (560)
T PRK08974 125 IVIVSNFA 132 (560)
T ss_pred EEEecccc
Confidence 98766443
No 275
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=53.59 E-value=1.7e+02 Score=28.33 Aligned_cols=86 Identities=2% Similarity=-0.110 Sum_probs=64.8
Q ss_pred CeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEee-CCCCHHHHHHHHHhcCcc
Q 046637 199 KGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVT 273 (301)
Q Consensus 199 K~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t 273 (301)
....+|+..+...+..+...+ ++.++|++...++-. ..+. ..++++..|+..+.. +...++.+...++..++.
T Consensus 118 ~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~ 195 (700)
T PTZ00216 118 ETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETR--WEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECK 195 (700)
T ss_pred CceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCC--HHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCcc
Confidence 457899999988777666544 678999988877753 3444 367778888877765 467888999999999999
Q ss_pred eecCChHHHHHHH
Q 046637 274 HFGGAPTVLNMIA 286 (301)
Q Consensus 274 ~~~~~P~~~~~l~ 286 (301)
.+++....+..+.
T Consensus 196 ~lv~~~~~~~~l~ 208 (700)
T PTZ00216 196 AIVCNGKNVPNLL 208 (700)
T ss_pred EEEECHHHHHHHH
Confidence 9998877665553
No 276
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=53.51 E-value=94 Score=28.71 Aligned_cols=84 Identities=8% Similarity=-0.155 Sum_probs=60.6
Q ss_pred eeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCccee
Q 046637 200 GVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHF 275 (301)
Q Consensus 200 ~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~ 275 (301)
...+|+..+...+......+ ++..++++...+|-.-.+ ....+.++..|+..+... ...++.+...+++.++..+
T Consensus 37 ~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~-~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (542)
T PRK06018 37 IVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRH-LEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVV 115 (542)
T ss_pred ceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHH-HHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEE
Confidence 34689999987776666544 677889888877653322 223577788888888774 6678999999999999999
Q ss_pred cCChHHHHH
Q 046637 276 GGAPTVLNM 284 (301)
Q Consensus 276 ~~~P~~~~~ 284 (301)
++.......
T Consensus 116 ~~~~~~~~~ 124 (542)
T PRK06018 116 ITDLTFVPI 124 (542)
T ss_pred EEccccHHH
Confidence 876654433
No 277
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=53.35 E-value=1.7e+02 Score=26.26 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=43.7
Q ss_pred CCCCCCEEEEEcCCCH--H--HHHHHH--Hhhhcccee---eecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHH
Q 046637 60 GISPGDVVAALAPNVP--A--MYELHF--GVPMAGAVL---CTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQ 126 (301)
Q Consensus 60 gv~~g~~V~i~~~n~~--~--~~~~~l--A~~~~G~~~---v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 126 (301)
.+++||.|.+.++..+ + -...+. .+.+.|+.+ +-.+-+.+.+++..+++..+|+.+|.-........
T Consensus 315 ~l~~~d~vi~s~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~h~SgHa~~~dl~~~i~~~~Pk~~ipvHge~~~~~ 390 (422)
T TIGR00649 315 RIRKGDTVVFSAPPIPGNENIAVSILLDIRLNEVGARVIKRIHVSGHASQEDHKLLLRLLKPKYIIPVHGEYRMLI 390 (422)
T ss_pred EeCCCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCEEEeceEecCCCCHHHHHHHHHHhCCCEEEecCCcHHHHH
Confidence 4568999988885544 3 112222 255678744 23455678899999999999998876544433333
No 278
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=53.06 E-value=15 Score=23.51 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCCCCCEEEE
Q 046637 51 KLASGLAHLGISPGDVVAA 69 (301)
Q Consensus 51 ~la~~L~~~gv~~g~~V~i 69 (301)
.+-..|.+.|+++||.|-|
T Consensus 44 Gv~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 44 GVEKALRKAGAKEGDTVRI 62 (69)
T ss_dssp THHHHHHTTT--TT-EEEE
T ss_pred CHHHHHHHcCCCCCCEEEE
Confidence 3445688889999999876
No 279
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=52.88 E-value=33 Score=28.81 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=43.7
Q ss_pred eeeHHHHHH-----HHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 39 QYTWKETHQ-----RCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 39 ~~Ty~el~~-----~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
.+.|.++.. ....+...|.+.|+.+++.|.++|.++.....+++++..+|..-+
T Consensus 201 ~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v 259 (281)
T PRK11493 201 NVPWTELVREGELKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNV 259 (281)
T ss_pred CCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCc
Confidence 577777763 245677778888999999999999999999999999988997543
No 280
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=52.75 E-value=93 Score=28.19 Aligned_cols=78 Identities=13% Similarity=-0.085 Sum_probs=55.7
Q ss_pred eechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecC
Q 046637 202 ICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 277 (301)
.+|+..+...+......+ +..+++++....+... --+...+.++..|+..+... ...+..+...++..++..+++
T Consensus 27 ~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~-~~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (503)
T PRK04813 27 KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSP-EMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIA 105 (503)
T ss_pred EEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEe
Confidence 589999987776665544 4667888888777433 22334677888888887665 456778888889999988887
Q ss_pred ChH
Q 046637 278 APT 280 (301)
Q Consensus 278 ~P~ 280 (301)
...
T Consensus 106 ~~~ 108 (503)
T PRK04813 106 TEE 108 (503)
T ss_pred ccc
Confidence 543
No 281
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=52.63 E-value=1.4e+02 Score=25.21 Aligned_cols=94 Identities=9% Similarity=-0.003 Sum_probs=55.1
Q ss_pred hhcCCccEEEECCe--eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHH
Q 046637 25 VVYRDRPSVVYGDV--QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAM 102 (301)
Q Consensus 25 ~~~~~~~al~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 102 (301)
+..+.++++..++. .-|+++... ...-..+.+.| +++.|... ..+-.-..+.++|...|.-++.+-|...+.+
T Consensus 28 ~~~g~~i~~K~E~~nptgS~Kdr~a--~~~l~~~~~~~--~~~~iv~~-ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~ 102 (304)
T cd01562 28 ELLGAEVYLKCENLQKTGSFKIRGA--YNKLLSLSEEE--RAKGVVAA-SAGNHAQGVAYAAKLLGIPATIVMPETAPAA 102 (304)
T ss_pred HHhCCeEEEEeccCCCcCCcHHHhH--HHHHHhcCHhh--cCCcEEEE-CCCHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 33345777777764 334432221 11112222333 23344443 3455556666777788886665556656677
Q ss_pred HHHHHHhcCceEEEEcCCchh
Q 046637 103 VSVLLRHSEAKIIFVDYQLLP 123 (301)
Q Consensus 103 l~~~l~~~~~~~vi~~~~~~~ 123 (301)
....++..++++++++.....
T Consensus 103 k~~~l~~~Ga~vi~~~~~~~~ 123 (304)
T cd01562 103 KVDATRAYGAEVVLYGEDFDE 123 (304)
T ss_pred HHHHHHHcCCEEEEeCCCHHH
Confidence 788999999999999876443
No 282
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=52.52 E-value=2.2e+02 Score=27.31 Aligned_cols=82 Identities=10% Similarity=-0.082 Sum_probs=61.5
Q ss_pred eechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEee-CCCCHHHHHHHHHhcCcceec
Q 046637 202 ICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 276 (301)
.+|+..+...+..+...+ ++.++|++...++-. ..+. ..++++..|+..|.+ +...++.+...++..+++.++
T Consensus 76 ~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~--~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~ 153 (660)
T PLN02430 76 WKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNC--PQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVF 153 (660)
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEE
Confidence 468998888777666544 678899988777653 3344 357788889888866 467889999999999999999
Q ss_pred CChHHHHHH
Q 046637 277 GAPTVLNMI 285 (301)
Q Consensus 277 ~~P~~~~~l 285 (301)
+....+..+
T Consensus 154 ~~~~~~~~~ 162 (660)
T PLN02430 154 VQDKKIKEL 162 (660)
T ss_pred ECHHHHHHH
Confidence 877644433
No 283
>PRK10717 cysteine synthase A; Provisional
Probab=52.50 E-value=1.5e+02 Score=25.49 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=55.6
Q ss_pred CccEEEECCeeeeHHHHH-HHHHHHHHHHHhcC-CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHH
Q 046637 29 DRPSVVYGDVQYTWKETH-QRCVKLASGLAHLG-ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVL 106 (301)
Q Consensus 29 ~~~al~~~~~~~Ty~el~-~~~~~la~~L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 106 (301)
.++++..++..-| +-+. +-+..+.....+.| +++|+.|.- ...+-.-..+.++|.+.|..+..+-|...++.....
T Consensus 28 ~~i~~K~E~~npt-GS~K~Rga~~~v~~a~~~g~~~~g~~vv~-aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~ 105 (330)
T PRK10717 28 CEILGKAEFLNPG-GSVKDRAALNIIWDAEKRGLLKPGGTIVE-GTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDL 105 (330)
T ss_pred CeEEEEeeccCCC-CCchHHHHHHHHHHHHHcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH
Confidence 3566666654333 1121 22222223344455 477776544 444455556666777889876666666666778899
Q ss_pred HHhcCceEEEEcCC
Q 046637 107 LRHSEAKIIFVDYQ 120 (301)
Q Consensus 107 l~~~~~~~vi~~~~ 120 (301)
++..++++++++..
T Consensus 106 ~~~~GA~V~~~~~~ 119 (330)
T PRK10717 106 LRALGAELVLVPAA 119 (330)
T ss_pred HHHcCCEEEEeCCc
Confidence 99999999999864
No 284
>PRK13390 acyl-CoA synthetase; Provisional
Probab=52.05 E-value=1.9e+02 Score=26.33 Aligned_cols=80 Identities=13% Similarity=-0.066 Sum_probs=58.8
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceec
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 276 (301)
..+|+..+...+..+...+ ++.++|++....+-.-. -+...++++..|+..+... ...+..+...++..++..+.
T Consensus 23 ~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~-~~~~~la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i 101 (501)
T PRK13390 23 EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPE-ALVVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLV 101 (501)
T ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEE
Confidence 4699999987777666554 57788998887765432 2334678888899888764 66788898999999988887
Q ss_pred CChHH
Q 046637 277 GAPTV 281 (301)
Q Consensus 277 ~~P~~ 281 (301)
+....
T Consensus 102 ~~~~~ 106 (501)
T PRK13390 102 ASAAL 106 (501)
T ss_pred Ecchh
Confidence 65543
No 285
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=51.08 E-value=1.1e+02 Score=28.52 Aligned_cols=81 Identities=9% Similarity=-0.116 Sum_probs=59.2
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceec
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 276 (301)
..+|...|...+..+...+ ++..++++...+|-..-+ +...++++..|+..+... .+....+...++..+++.++
T Consensus 48 ~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii 126 (563)
T PRK06710 48 KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQA-VIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVIL 126 (563)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHH-HHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEE
Confidence 3589999887777666554 567889888877754322 334677788887777664 66788899999999999998
Q ss_pred CChHHH
Q 046637 277 GAPTVL 282 (301)
Q Consensus 277 ~~P~~~ 282 (301)
+.+...
T Consensus 127 ~~~~~~ 132 (563)
T PRK06710 127 CLDLVF 132 (563)
T ss_pred Eeccch
Confidence 876443
No 286
>PRK06060 acyl-CoA synthetase; Validated
Probab=50.95 E-value=1.4e+02 Score=28.77 Aligned_cols=81 Identities=10% Similarity=-0.013 Sum_probs=58.3
Q ss_pred eechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecC
Q 046637 202 ICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 277 (301)
.+|+..|...+..+...+ ++.+++++...+|-...+ +..++.++..|+..+..+ ...+..+...+++.++..+++
T Consensus 30 ~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~-~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~ 108 (705)
T PRK06060 30 VVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDL-VQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVT 108 (705)
T ss_pred ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEE
Confidence 489999877766655544 678899988887754322 234677888898877764 566778888888999988887
Q ss_pred ChHHHH
Q 046637 278 APTVLN 283 (301)
Q Consensus 278 ~P~~~~ 283 (301)
......
T Consensus 109 ~~~~~~ 114 (705)
T PRK06060 109 SDALRD 114 (705)
T ss_pred chHHhh
Confidence 665443
No 287
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=50.45 E-value=1e+02 Score=28.58 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHh----cCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEE
Q 046637 42 WKETHQRCVKLASGLAH----LGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFV 117 (301)
Q Consensus 42 y~el~~~~~~la~~L~~----~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 117 (301)
|+.+.+.++.+.+.+.. .|..+|++|+|++.- +--..++.++...|+.++.++.+ ++-.+..+..+++.+..
T Consensus 139 y~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG-~iGL~Ai~~Ak~lGA~V~a~D~~---~~rle~aeslGA~~v~i 214 (509)
T PRK09424 139 YRAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAG-VAGLAAIGAAGSLGAIVRAFDTR---PEVAEQVESMGAEFLEL 214 (509)
T ss_pred HHHHHHHHHHhcccCCCceeccCCcCCCEEEEECCc-HHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHcCCeEEEe
Confidence 66666666666554432 367889999999984 55555666667889876666554 33344555678876544
No 288
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=50.20 E-value=1.5e+02 Score=24.86 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=58.2
Q ss_pred cCCccEEEECCeeeeHHHHHHH-HHHHHHHHHhcCC-CCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHH
Q 046637 27 YRDRPSVVYGDVQYTWKETHQR-CVKLASGLAHLGI-SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVS 104 (301)
Q Consensus 27 ~~~~~al~~~~~~~Ty~el~~~-~~~la~~L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 104 (301)
.+.++++..++..-| +-+..+ +..+...+.+.|. .+|+.|.. ...+-.-....++|...|..++.+-|........
T Consensus 15 ~g~~i~~K~E~~~pt-gS~K~R~a~~~l~~a~~~g~~~~~~~vv~-~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~ 92 (291)
T cd01561 15 TGAEIYAKLEFFNPG-GSVKDRIALYMIEDAEKRGLLKPGTTIIE-PTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKR 92 (291)
T ss_pred CCCeEEEEecccCCC-CcchHHHHHHHHHHHHHcCCCCCCCEEEE-eCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHH
Confidence 334677777764333 222222 2222233444553 35666554 4445555666778888998777666766667778
Q ss_pred HHHHhcCceEEEEcCCc
Q 046637 105 VLLRHSEAKIIFVDYQL 121 (301)
Q Consensus 105 ~~l~~~~~~~vi~~~~~ 121 (301)
..++..++++++++...
T Consensus 93 ~~~~~~Ga~v~~~~~~~ 109 (291)
T cd01561 93 KLLRALGAEVILTPEAE 109 (291)
T ss_pred HHHHHcCCEEEEeCCCC
Confidence 89999999999998765
No 289
>PRK08526 threonine dehydratase; Provisional
Probab=50.14 E-value=1.8e+02 Score=26.05 Aligned_cols=97 Identities=12% Similarity=0.011 Sum_probs=54.4
Q ss_pred hcCCccEEEECCee--eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHH
Q 046637 26 VYRDRPSVVYGDVQ--YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMV 103 (301)
Q Consensus 26 ~~~~~~al~~~~~~--~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l 103 (301)
..+.++++..++.. =||+.= .....+.. |.+.+..+| .|. ...+=.-....++|...|..+..+-|...+..-
T Consensus 32 ~~g~~iylK~E~lqptGSfK~R-gA~n~i~~-l~~~~~~~g-VV~--aSaGNhg~avA~aa~~~Gi~~~IvmP~~~p~~k 106 (403)
T PRK08526 32 ISGAEVYLKKENLQITGAYKIR-GAYNKIAN-LSEEQKQHG-VIA--ASAGNHAQGVAISAKKFGIKAVIVMPEATPLLK 106 (403)
T ss_pred HhCCeEEEEecCCCCCCCCHHH-HHHHHHHh-ccHhhcCCE-EEE--ECccHHHHHHHHHHHHcCCCEEEEEcCCCCHHH
Confidence 33456888887743 333321 11122222 222222223 233 333444556667788888866666666666666
Q ss_pred HHHHHhcCceEEEEcCCchhhHHH
Q 046637 104 SVLLRHSEAKIIFVDYQLLPIAQG 127 (301)
Q Consensus 104 ~~~l~~~~~~~vi~~~~~~~~~~~ 127 (301)
...++..+++++++.....+....
T Consensus 107 ~~~~r~~GA~Vv~~g~~~~~a~~~ 130 (403)
T PRK08526 107 VSGTKALGAEVILKGDNYDEAYAF 130 (403)
T ss_pred HHHHHhCCCEEEEECCCHHHHHHH
Confidence 677999999999998655444333
No 290
>PRK07787 acyl-CoA synthetase; Validated
Probab=50.11 E-value=1.2e+02 Score=27.30 Aligned_cols=74 Identities=9% Similarity=-0.152 Sum_probs=56.0
Q ss_pred eechHHHHHHHHHHHHHhhCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCCh
Q 046637 202 ICSHRGAYLNSLAAALFNEMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P 279 (301)
.+|...+...+......+. +++++....|-. ..+. ..++++..|+..+..+ ...+..+...+++.+++.+...+
T Consensus 25 ~~Ty~el~~~~~~~a~~L~--~~~~V~l~~~~~--~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~ 100 (471)
T PRK07787 25 VLSRSDLAGAATAVAERVA--GARRVAVLATPT--LATVLAVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLGPA 100 (471)
T ss_pred EEEHHHHHHHHHHHHHHhc--cCCEEEEECCCC--HHHHHHHHHHHhcCcEEeecCCCCChHHHHHHHHhcCCCEEEecC
Confidence 5899999888777766654 567777666543 3433 4678888898888775 56788999999999999988765
No 291
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=49.41 E-value=2.2e+02 Score=26.30 Aligned_cols=85 Identities=11% Similarity=0.106 Sum_probs=59.9
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH---HHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceE
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM---YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKI 114 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~---~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (301)
-.+|.+.+...+.... ...++.++|++....|-.-.+ ....++++..|+..+.. +......+...+++.++.+
T Consensus 200 V~~s~~~l~~~~~~~~---~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~~l~~~~~t~ 275 (536)
T PRK10946 200 IPRTHNDYYYSVRRSV---EICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLA-PDPSATLCFPLIEKHQVNV 275 (536)
T ss_pred EEEehHHHHHHHHHHH---HhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEEC-CCCCHHHHHHHHHHhCCcE
Confidence 4689998888766543 345788999888877654322 22467788888887765 4556777888899999998
Q ss_pred EEEcCCchhhHH
Q 046637 115 IFVDYQLLPIAQ 126 (301)
Q Consensus 115 vi~~~~~~~~~~ 126 (301)
+.........+.
T Consensus 276 ~~~~p~~~~~l~ 287 (536)
T PRK10946 276 TALVPPAVSLWL 287 (536)
T ss_pred EEeChHHHHHHH
Confidence 888766555443
No 292
>PF09153 DUF1938: Domain of unknown function (DUF1938); InterPro: IPR015236 This domain, which is predominantly found in the archaeal protein O6-alkylguanine-DNA alkyltransferase, adopts a secondary structure consisting of a three stranded antiparallel beta-sheet and three alpha helices. The exact function has not, as yet, been defined, though it has been postulated that this domain may confer thermostability to the protein []. ; GO: 0005737 cytoplasm; PDB: 1MGT_A.
Probab=49.02 E-value=46 Score=22.05 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=24.5
Q ss_pred cEEEECCe------eeeHHHHHH-HHHHHHHHHHhcCCC
Q 046637 31 PSVVYGDV------QYTWKETHQ-RCVKLASGLAHLGIS 62 (301)
Q Consensus 31 ~al~~~~~------~~Ty~el~~-~~~~la~~L~~~gv~ 62 (301)
+|++++++ +++-.||.+ ++.+++..|.++|++
T Consensus 16 I~vi~e~kIqGItfslDg~efl~eri~~L~~~L~kRgv~ 54 (86)
T PF09153_consen 16 IAVIFEEKIQGITFSLDGEEFLRERISRLIEFLKKRGVS 54 (86)
T ss_dssp EEEEESSSEEEEEEESSHHHHHH-HHHHHHHHHHHTT--
T ss_pred EEEEEcCceeeEEEEeccHHHHHHHHHHHHHHHHhcCce
Confidence 56777663 566789988 999999999999876
No 293
>PLN02356 phosphateglycerate kinase
Probab=48.31 E-value=1.7e+02 Score=26.42 Aligned_cols=89 Identities=16% Similarity=0.009 Sum_probs=54.1
Q ss_pred ccEEEECCeeeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHH
Q 046637 30 RPSVVYGDVQYTWKETHQRCVKLASGLAHLGI-SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLR 108 (301)
Q Consensus 30 ~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~ 108 (301)
++.+..+...-|-.==++-+..+-..+.+.|. ++|..|. ....+---....++|...|.-++.+-|...+.+-...|+
T Consensus 69 ~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~Vv-eaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir 147 (423)
T PLN02356 69 EILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVT-EGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILE 147 (423)
T ss_pred EEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEE-EeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHH
Confidence 45555554333311112333333344455454 4776554 333344466677778889987776667777777789999
Q ss_pred hcCceEEEEcC
Q 046637 109 HSEAKIIFVDY 119 (301)
Q Consensus 109 ~~~~~~vi~~~ 119 (301)
..+++++.++.
T Consensus 148 ~~GAeVi~v~~ 158 (423)
T PLN02356 148 ALGATVERVRP 158 (423)
T ss_pred HcCCEEEEECC
Confidence 99999999853
No 294
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=48.27 E-value=1.2e+02 Score=27.95 Aligned_cols=77 Identities=6% Similarity=-0.104 Sum_probs=56.2
Q ss_pred eechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecC
Q 046637 202 ICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 277 (301)
.+|+..+...+...... .++.+++++...++-.. ......++++..|+..+... ......+...++..++..+++
T Consensus 46 ~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~-~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~ 124 (541)
T TIGR03205 46 PITYTELEAMAETAAAALLRAGYGKDASVALYLGNTP-DHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLIT 124 (541)
T ss_pred EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCh-HHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEE
Confidence 68999887766655543 36778999888887433 22334677788888888664 567889999999999999876
Q ss_pred Ch
Q 046637 278 AP 279 (301)
Q Consensus 278 ~P 279 (301)
..
T Consensus 125 ~~ 126 (541)
T TIGR03205 125 SD 126 (541)
T ss_pred eC
Confidence 53
No 295
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=48.17 E-value=1.4e+02 Score=26.81 Aligned_cols=78 Identities=4% Similarity=-0.243 Sum_probs=57.5
Q ss_pred eeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceec
Q 046637 201 VICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 276 (301)
..+|+..+...+......+ ++.+++++....+-.- ..+...+.++..|+..+... ...++.+-..+++.++..+.
T Consensus 27 ~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~-~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i 105 (458)
T PRK09029 27 EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSP-ETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFAL 105 (458)
T ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCH-HHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEE
Confidence 4689999988777766554 5678888887776533 22334678888899888774 56778888889999998887
Q ss_pred CCh
Q 046637 277 GAP 279 (301)
Q Consensus 277 ~~P 279 (301)
...
T Consensus 106 ~~~ 108 (458)
T PRK09029 106 VLE 108 (458)
T ss_pred EcC
Confidence 644
No 296
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=47.69 E-value=1.6e+02 Score=24.33 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=46.4
Q ss_pred HHHHHHHHhcC-CCCCCEEEEEcCCCHHHHHHHHHhhhc------c--ceeeecCCC---CCHHHHHHHHHhcCceEEEE
Q 046637 50 VKLASGLAHLG-ISPGDVVAALAPNVPAMYELHFGVPMA------G--AVLCTLNTR---HDSAMVSVLLRHSEAKIIFV 117 (301)
Q Consensus 50 ~~la~~L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~------G--~~~v~l~~~---~~~~~l~~~l~~~~~~~vi~ 117 (301)
.++.+.+.+.+ +.+|++|+|...-+.+..+++..+... | ..++-++.+ +..+.+..+.+..+....+.
T Consensus 14 ~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~~~~~lgI~~~v~ 93 (258)
T PRK10696 14 RQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPEYLESLGVPYHIE 93 (258)
T ss_pred HHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHHHHHHhCCCEEEE
Confidence 44555566665 578999999999999987766655332 2 345555553 34455677778888777666
Q ss_pred cC
Q 046637 118 DY 119 (301)
Q Consensus 118 ~~ 119 (301)
+.
T Consensus 94 ~~ 95 (258)
T PRK10696 94 EQ 95 (258)
T ss_pred Ee
Confidence 53
No 297
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=47.56 E-value=1e+02 Score=22.77 Aligned_cols=50 Identities=10% Similarity=-0.076 Sum_probs=25.2
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH---HHHHHHHhhhccceeee
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA---MYELHFGVPMAGAVLCT 93 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~---~~~~~lA~~~~G~~~v~ 93 (301)
+.++..++.+...+.. .+ .++..|.|.+..... .+-.+=+|..+|..-+.
T Consensus 79 ~~v~~~~L~~~L~~~~---~~---~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~v~ 131 (141)
T PRK11267 79 DPVTDETMITALDALT---EG---KKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIG 131 (141)
T ss_pred ccccHHHHHHHHHHHH---hc---CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 4555555554433321 11 244556666666543 34555566666664333
No 298
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=47.52 E-value=2.2e+02 Score=25.79 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=30.0
Q ss_pred CCCCCEEEEEcCCCHH-HHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 61 ISPGDVVAALAPNVPA-MYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
+++||.|.+....-.. .-...+.+.+.|+.+..+++. ..+++...++. +.++|++..
T Consensus 100 l~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-d~~~l~~~i~~-~TklV~~e~ 157 (433)
T PRK08134 100 MGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG-DIDGWRAAIRP-NTRLLFGET 157 (433)
T ss_pred hCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC-CHHHHHHhcCC-CCeEEEEEC
Confidence 5677776554332221 112223345667777776654 56666666643 455555553
No 299
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=46.83 E-value=20 Score=26.59 Aligned_cols=49 Identities=10% Similarity=0.234 Sum_probs=43.1
Q ss_pred ccccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHH
Q 046637 4 MIRCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKL 52 (301)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~l 52 (301)
+.++....-+..+..+|.+.+..++..+-+.....+.||.|+...-..+
T Consensus 2 ~~Dp~sGFrH~~Vv~FINee~~~n~~GpeFYl~~~S~sW~eVEdkLraI 50 (152)
T PF15186_consen 2 FGDPSSGFRHGEVVAFINEEMLRNGGGPEFYLENRSLSWEEVEDKLRAI 50 (152)
T ss_pred CCCCCCCccccHHHHHHHHHHHhcCCCchHHHHhccCCHHHHHHHHHHH
Confidence 5677777888899999999999999999999999999999998876655
No 300
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=46.52 E-value=2e+02 Score=30.05 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=65.3
Q ss_pred cCCccEEEEC---------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-HHHHHHhhhccceeeecCC
Q 046637 27 YRDRPSVVYG---------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM-YELHFGVPMAGAVLCTLNT 96 (301)
Q Consensus 27 ~~~~~al~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~ 96 (301)
.++.+|++.. +-.+|.+.+...+... -...++.++|++....+-+.+. +.-+++.+..|+..+..++
T Consensus 596 ~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 672 (1296)
T PRK10252 596 QPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWM---QNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEP 672 (1296)
T ss_pred CCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHH---HHhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECCh
Confidence 3556666541 2467888776655433 3345889999999888776553 3345667778888777654
Q ss_pred --CCCHHHHHHHHHhcCceEEEEcCCchhh
Q 046637 97 --RHDSAMVSVLLRHSEAKIIFVDYQLLPI 124 (301)
Q Consensus 97 --~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (301)
...++.+...+++.++.++.........
T Consensus 673 ~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~ 702 (1296)
T PRK10252 673 EAHRDPLAMQQFFAEYGVTTTHFVPSMLAA 702 (1296)
T ss_pred hccCCHHHHHHHHHHcCCeEEEeCHHHHHH
Confidence 3577889999999999988776655443
No 301
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=46.52 E-value=2.2e+02 Score=26.74 Aligned_cols=82 Identities=18% Similarity=0.070 Sum_probs=61.9
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC--CHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEE
Q 046637 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN--VPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIF 116 (301)
Q Consensus 39 ~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (301)
.+|...+...+.-+ ....|+.+.|+|-+.+|- +...++-+-+|+..|+++| |...+|+..+-.--.+++|.++-
T Consensus 261 vith~r~~~~a~g~---~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~V-lrkKFSAS~FW~DC~k~~~Tv~Q 336 (649)
T KOG1179|consen 261 VITHLRYLQGAAGF---YYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVV-LRKKFSASNFWDDCRKYNVTVIQ 336 (649)
T ss_pred HHHHHHHHHHHHHH---HHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEE-EecccchhhhHHHHHHhCCeeee
Confidence 57777766655444 344599999999998885 5677888899999997655 66889999888888899988876
Q ss_pred EcCCchhh
Q 046637 117 VDYQLLPI 124 (301)
Q Consensus 117 ~~~~~~~~ 124 (301)
.-.+....
T Consensus 337 YIGElcRY 344 (649)
T KOG1179|consen 337 YIGELCRY 344 (649)
T ss_pred hHHHHHHH
Confidence 65554444
No 302
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=45.93 E-value=2.1e+02 Score=25.20 Aligned_cols=93 Identities=8% Similarity=0.012 Sum_probs=56.0
Q ss_pred hcCCccEEEECCe--eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHH
Q 046637 26 VYRDRPSVVYGDV--QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMV 103 (301)
Q Consensus 26 ~~~~~~al~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l 103 (301)
..+.++++..++. +=|+++ +-+......+.+.|..++ .+....+=.-....++|...|..+..+-|...+.+-
T Consensus 12 ~~g~~i~~K~E~~~ptgS~K~--R~a~~~i~~~~~~~~~~~---vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k 86 (380)
T TIGR01127 12 ITGSEVYLKLENLQKTGSFKI--RGALNKIANLSEDQRQRG---VVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSK 86 (380)
T ss_pred HhCCeEEEEecCCCCCCCcHH--HHHHHHHHhcchhccCCE---EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHH
Confidence 3445678887764 334433 222222222333343322 233333444556667788899877766677777788
Q ss_pred HHHHHhcCceEEEEcCCchh
Q 046637 104 SVLLRHSEAKIIFVDYQLLP 123 (301)
Q Consensus 104 ~~~l~~~~~~~vi~~~~~~~ 123 (301)
...++..+++++++.....+
T Consensus 87 ~~~~~~~GA~V~~~~~~~~~ 106 (380)
T TIGR01127 87 VKATKSYGAEVILHGDDYDE 106 (380)
T ss_pred HHHHHHCCCEEEEECCCHHH
Confidence 89999999999998765433
No 303
>PRK10595 SOS cell division inhibitor; Provisional
Probab=45.59 E-value=1.2e+02 Score=23.27 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCceEEEEc
Q 046637 101 AMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 101 ~~l~~~l~~~~~~~vi~~ 118 (301)
..++..|+.-.+.+|++-
T Consensus 96 wa~EqaLrsG~~~aVL~W 113 (164)
T PRK10595 96 EAMERALRTGNYSVVLGW 113 (164)
T ss_pred HHHHHHHhhCCCcEEEEC
Confidence 345566666666666664
No 304
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=44.73 E-value=76 Score=24.68 Aligned_cols=50 Identities=6% Similarity=-0.029 Sum_probs=34.7
Q ss_pred CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 37 DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 37 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
+..+||+|+.+.+.++|..+.+. ++..+.+.+-..++-..++..+|- .+|
T Consensus 14 ~~~~s~~~i~~~i~~la~~i~~~-~~~~~~viV~i~~gg~~~A~~La~-~l~ 63 (181)
T PRK09162 14 DCLVSAAEVEAAIDRMADEITAD-LADENPLVLCVMGGGLVFTGQLLP-RLD 63 (181)
T ss_pred cEeecHHHHHHHHHHHHHHHHHH-cCCCCeEEEEECCCcHHHHHHHHH-HcC
Confidence 46789999999999999999875 222223555566666666666664 344
No 305
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=43.83 E-value=1.1e+02 Score=21.49 Aligned_cols=52 Identities=15% Similarity=0.015 Sum_probs=35.7
Q ss_pred EEeccc-hhhhhhHHHHHHHH-hCCeEEee-CCCCHHHHHHHHHhcCcceecCCh
Q 046637 228 LWCVPM-FHCNGWCLTWAVAA-QGGTNVCQ-RTVNAKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 228 l~~~p~-~h~~g~~~~~~~l~-~g~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P 279 (301)
+.+.|- .|..|...+-..+. .|-.++.. ....++++.+.+.+.+++++.++-
T Consensus 4 ~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~ 58 (119)
T cd02067 4 IATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSG 58 (119)
T ss_pred EEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 334443 78888765444443 56666555 356789999999999999886654
No 306
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=43.72 E-value=2.1e+02 Score=24.51 Aligned_cols=89 Identities=13% Similarity=-0.022 Sum_probs=53.6
Q ss_pred CccEEEECCe--eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHH
Q 046637 29 DRPSVVYGDV--QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVL 106 (301)
Q Consensus 29 ~~~al~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 106 (301)
.++++..++- +-|++ ++.+..+...+.+.| ++.|... ..+-.-....++|...|..+..+-|...+......
T Consensus 38 ~~i~~K~E~~nptGS~K--~R~a~~~l~~a~~~g---~~~vv~~-SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~ 111 (324)
T cd01563 38 KNLYVKDEGLNPTGSFK--DRGMTVAVSKAKELG---VKAVACA-STGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQ 111 (324)
T ss_pred CceEEEecCCCCcccHH--HhhHHHHHHHHHHcC---CCEEEEe-CCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHH
Confidence 4677777653 23333 222333333444444 4455444 23333344457788889876666665556777888
Q ss_pred HHhcCceEEEEcCCchh
Q 046637 107 LRHSEAKIIFVDYQLLP 123 (301)
Q Consensus 107 l~~~~~~~vi~~~~~~~ 123 (301)
++..++++++++.....
T Consensus 112 l~~~GA~Vi~~~~~~~~ 128 (324)
T cd01563 112 ALAYGATVLAVEGNFDD 128 (324)
T ss_pred HHHcCCEEEEECCcHHH
Confidence 99999999999875433
No 307
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=43.70 E-value=1.6e+02 Score=26.00 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=6.9
Q ss_pred CCCCCEEEEEcCC
Q 046637 61 ISPGDVVAALAPN 73 (301)
Q Consensus 61 v~~g~~V~i~~~n 73 (301)
+++||.|++..+.
T Consensus 87 l~~GD~Vl~~~p~ 99 (382)
T TIGR02080 87 LGPDDLLVAPHDC 99 (382)
T ss_pred cCCCCEEEEcCCC
Confidence 4566665554443
No 308
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=43.00 E-value=1.4e+02 Score=25.74 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=36.8
Q ss_pred HHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 56 LAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 56 L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
+...++++|++|+|.+. +.--..+...+...|+.++.+. .+++.+. +++..+++.++..
T Consensus 159 ~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~--~~~~~~~-~~~~~Ga~~~i~~ 217 (349)
T TIGR03201 159 AVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAID--IDPEKLE-MMKGFGADLTLNP 217 (349)
T ss_pred HHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEc--CCHHHHH-HHHHhCCceEecC
Confidence 34467899999999998 5544444444445677655553 3444544 4566777766643
No 309
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.90 E-value=2.4e+02 Score=25.08 Aligned_cols=53 Identities=6% Similarity=-0.021 Sum_probs=27.6
Q ss_pred CEEEEEcCCCHH--HHHHHHHhhhc------cceee--ecCCC--CCHHHHHHHHHhcCceEEEE
Q 046637 65 DVVAALAPNVPA--MYELHFGVPMA------GAVLC--TLNTR--HDSAMVSVLLRHSEAKIIFV 117 (301)
Q Consensus 65 ~~V~i~~~n~~~--~~~~~lA~~~~------G~~~v--~l~~~--~~~~~l~~~l~~~~~~~vi~ 117 (301)
..|+++++++.- -.++-+|.... |..+. -+++- ...+.+....+..+..+...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~ 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAI 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEee
Confidence 467788888763 34444444321 33333 33331 23455666666666655443
No 310
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=42.76 E-value=2.6e+02 Score=25.32 Aligned_cols=106 Identities=12% Similarity=-0.023 Sum_probs=59.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 39 ~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
.+|..+........-....-.|+..|++++++..-+....-. +.....-+...+-..+.++....|+..+|.++++.
T Consensus 118 ~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly~~---~~~~~~~~~~~~l~~~~~~~l~~L~~~~P~~L~g~ 194 (430)
T TIGR02304 118 VVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLYQS---VNNRWISLDFFDLLAPFQAHIKRLNQRKPSIIVAP 194 (430)
T ss_pred EECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHHHH---HHhccceeeecCCCcCHHHHHHHHHHhCCCEEEEc
Confidence 356665544433332233334889999999994322222211 12222213333334678899999999999999998
Q ss_pred CCchhhHHHHHHHhccccCCCCceEEccCC
Q 046637 119 YQLLPIAQGAFEILSKTSAKLPLLVLVPEC 148 (301)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 148 (301)
......+.+....... ...++.++...+.
T Consensus 195 pS~l~~LA~~~~~~~l-~~~~k~ii~~~E~ 223 (430)
T TIGR02304 195 PSVLRALALEVMEGEL-TIKPKKVISVAEV 223 (430)
T ss_pred HHHHHHHHHHHHhcCC-CCCceEEEEccCC
Confidence 8776655554433221 1145666666544
No 311
>PRK12483 threonine dehydratase; Reviewed
Probab=42.75 E-value=2.3e+02 Score=26.45 Aligned_cols=54 Identities=6% Similarity=-0.005 Sum_probs=38.9
Q ss_pred CHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHH
Q 046637 74 VPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQG 127 (301)
Q Consensus 74 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 127 (301)
+=......++|...|..+..+=|...+..-...++..++++++..+...+....
T Consensus 94 GNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~~~d~a~~~ 147 (521)
T PRK12483 94 GNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGESFPDALAH 147 (521)
T ss_pred CHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHH
Confidence 444555667788888877766676677777888999999999997655444333
No 312
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=42.53 E-value=2.3e+02 Score=25.70 Aligned_cols=60 Identities=7% Similarity=-0.048 Sum_probs=43.3
Q ss_pred EEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHH
Q 046637 69 ALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGA 128 (301)
Q Consensus 69 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 128 (301)
+....+=.-....++|...|..++..=|...+..-...++..+++++++.....+.....
T Consensus 156 v~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~~~~~a~~~A 215 (431)
T TIGR02035 156 AVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYESDYGVAVEEG 215 (431)
T ss_pred EEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHH
Confidence 344444455666677778888777666777888889999999999999987655444333
No 313
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=42.01 E-value=1.1e+02 Score=20.73 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcCC---------CCCCEEEEE-cCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHH
Q 046637 46 HQRCVKLASGLAHLGI---------SPGDVVAAL-APNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLR 108 (301)
Q Consensus 46 ~~~~~~la~~L~~~gv---------~~g~~V~i~-~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~ 108 (301)
.++.+.+...+.+.|. ++=|.|.|+ .|+......+.+++...|.+-.=.-+..+.+++..+++
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~k 91 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIVK 91 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHhC
Confidence 4455555555556553 345667776 55555577788999999977666667888898887763
No 314
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=42.00 E-value=2e+02 Score=24.77 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=9.9
Q ss_pred CCCC--eeeechHHHHHHH
Q 046637 196 SSPK--GVICSHRGAYLNS 212 (301)
Q Consensus 196 G~pK--~v~~s~~~l~~~~ 212 (301)
|.|. |+.+..+.++..+
T Consensus 189 ~~p~g~G~l~~~~~~~~~~ 207 (356)
T cd06451 189 GAPPGLGPIAFSERALERI 207 (356)
T ss_pred cCCCCcceeEECHHHHHHH
Confidence 5454 6666666665443
No 315
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=41.93 E-value=1.8e+02 Score=27.45 Aligned_cols=94 Identities=7% Similarity=-0.198 Sum_probs=64.3
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR- 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~- 256 (301)
.++.++++.. +..| ....+|+..+...+......+ ++.++|++...++-..- -+...+.++..|+..+.+.
T Consensus 52 ~p~~~a~~~~--~~~~--~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e-~~~~~lA~~~~Gav~vpl~~ 126 (614)
T PRK08180 52 APDRVFLAER--GADG--GWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIE-HALLALAAMYAGVPYAPVSP 126 (614)
T ss_pred CCCCceeeec--cCCC--ceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHH-HHHHHHHHHHcCCeEeeecc
Confidence 4556665532 1112 235789999988777666544 67889998888775432 2234678888999988775
Q ss_pred CCC-----HHHHHHHHHhcCcceecCCh
Q 046637 257 TVN-----AKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 257 ~~~-----~~~~~~~i~~~~~t~~~~~P 279 (301)
... +..+...+++.++..+++..
T Consensus 127 ~~~~~~~~~~~l~~~l~~~~~~~li~~~ 154 (614)
T PRK08180 127 AYSLVSQDFGKLRHVLELLTPGLVFADD 154 (614)
T ss_pred ccccccCCHHHHHHHHhcCCCcEEEEcC
Confidence 333 67888999999999888754
No 316
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=41.90 E-value=1.4e+02 Score=25.67 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=36.7
Q ss_pred HHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEE
Q 046637 56 LAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFV 117 (301)
Q Consensus 56 L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 117 (301)
+...++++|++|+|.+.-..-..++.+ +...|+.++.+... .+. ..++++.+++.++-
T Consensus 158 ~~~~~~~~g~~VlV~G~g~iG~~a~~~-a~~~G~~vi~~~~~--~~~-~~~a~~~Ga~~vi~ 215 (329)
T TIGR02822 158 LLRASLPPGGRLGLYGFGGSAHLTAQV-ALAQGATVHVMTRG--AAA-RRLALALGAASAGG 215 (329)
T ss_pred HHhcCCCCCCEEEEEcCCHHHHHHHHH-HHHCCCeEEEEeCC--hHH-HHHHHHhCCceecc
Confidence 344578999999999974444444444 44567765555333 333 46677888877654
No 317
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=41.59 E-value=80 Score=22.29 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCC-CHHHHHHHHHhhhccce
Q 046637 50 VKLASGLAHLGISPGDVVAALAPN-VPAMYELHFGVPMAGAV 90 (301)
Q Consensus 50 ~~la~~L~~~gv~~g~~V~i~~~n-~~~~~~~~lA~~~~G~~ 90 (301)
..+...+.+.|+.+++.|.+++.. +.....+.+.+...|..
T Consensus 65 ~~~~~~~~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~ 106 (122)
T cd01448 65 EEFAELLGSLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHE 106 (122)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCC
Confidence 455566777789999999999988 46666677777788864
No 318
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=41.53 E-value=83 Score=23.09 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=34.9
Q ss_pred eHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcC--CCHHHHHHHHHhhhccceeeec
Q 046637 41 TWKETHQRCVKLASGLAHL-GISPGDVVAALAP--NVPAMYELHFGVPMAGAVLCTL 94 (301)
Q Consensus 41 Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~--n~~~~~~~~lA~~~~G~~~v~l 94 (301)
....-.+.-..++..+... .+++||.+.+++. |++..+-+...+...|+.++.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 80 AISNDLEYDEGFARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp HHHHHTTGGGTHHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred hhhcccchhhHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 4444555556677776654 7899998888754 5677888888889999877765
No 319
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=41.47 E-value=2e+02 Score=23.69 Aligned_cols=104 Identities=13% Similarity=0.014 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECC-------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhh
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGD-------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVP 85 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~ 85 (301)
...+.+.+.+.+++||+..++...+ ..++|++- +...++-.+... ..+...|+++.......+..+...+
T Consensus 65 g~~~~~~~~~vA~~~p~~~F~~~d~~~~~~Nv~~~~~~~~--e~~ylaG~~Aa~-~t~t~kVG~I~g~~~~~~~~~~~gF 141 (258)
T cd06353 65 SFGFMDAALKVAKEYPDVKFEHCSGYKTAPNVGSYFARIY--EGRYLAGVVAGK-MTKTNKVGYVAAFPIPEVVRGINAF 141 (258)
T ss_pred chhhhHHHHHHHHHCCCCEEEECCCCCCCCCeeeEechhh--HHHHHHHHHHHH-hhcCCcEEEEcCcccHHHHHHHHHH
Confidence 3455678899999999998888643 23444332 333333333322 2234479999887666655555566
Q ss_pred hccceee---------ec----CCCCCHHHHHHHHHhcCceEEEEcCC
Q 046637 86 MAGAVLC---------TL----NTRHDSAMVSVLLRHSEAKIIFVDYQ 120 (301)
Q Consensus 86 ~~G~~~v---------~l----~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (301)
..|+-.+ .. ++....+....++ ..++++|+....
T Consensus 142 ~~G~~~~~p~~~v~~~~~g~~~D~~~a~~~a~~l~-~~G~DvI~~~~~ 188 (258)
T cd06353 142 ALGARSVNPDATVKVIWTGSWFDPAKEKEAALALI-DQGADVIYQHTD 188 (258)
T ss_pred HHHHHHHCCCcEEEEEEecCCCCcHHHHHHHHHHH-HCCCcEEEecCC
Confidence 6665422 11 1111223334444 568998888763
No 320
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=41.43 E-value=1.8e+02 Score=25.25 Aligned_cols=70 Identities=11% Similarity=-0.045 Sum_probs=32.6
Q ss_pred HHHHHHHHHhc-CCCCCCEEEEEcCCCHHHH-HHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 49 CVKLASGLAHL-GISPGDVVAALAPNVPAMY-ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 49 ~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~-~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
.+.+-..|.++ |.+++....++..++.+.+ .++.++..-|...+.+.+..-...+..+.+..+.++..+.
T Consensus 37 ~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~ 108 (363)
T TIGR02326 37 VEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVD 108 (363)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEe
Confidence 33333334433 5555433444545544433 3333444444443333343333444555666666666554
No 321
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=41.39 E-value=2.1e+02 Score=23.92 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCC--CCH---HHHHHHHHhcCceE
Q 046637 42 WKETHQRCVKLASGLAHL--GISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTR--HDS---AMVSVLLRHSEAKI 114 (301)
Q Consensus 42 y~el~~~~~~la~~L~~~--gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~--~~~---~~l~~~l~~~~~~~ 114 (301)
++.+.++.+.+-..+++. .+..+.+..+...+...++.-.+++-..|.. .+.+. -++ .++...++..+.++
T Consensus 136 ~~~~~~~L~~l~~~~~~~l~~~~~~~~~~~t~H~af~Y~~~~ygl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~ 213 (276)
T cd01016 136 SEAYVEELDSLDAYAKKKIAEIPEQQRVLVTAHDAFGYFGRAYGFEVKGLQ--GISTDSEAGLRDINELVDLIVERKIKA 213 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchhcCeEEEecCcHHHHHHHcCCeEecCc--CCCcccCCCHHHHHHHHHHHHHcCCCE
Confidence 444444444444444433 2333456777777778888777766655522 22233 234 45666778889999
Q ss_pred EEEcCCchhhHHH
Q 046637 115 IFVDYQLLPIAQG 127 (301)
Q Consensus 115 vi~~~~~~~~~~~ 127 (301)
||++...-....+
T Consensus 214 if~e~~~~~~~~~ 226 (276)
T cd01016 214 IFVESSVNQKSIE 226 (276)
T ss_pred EEEeCCCCHHHHH
Confidence 9999886654433
No 322
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=41.35 E-value=3.5e+02 Score=27.86 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=63.1
Q ss_pred cCCccEEEEC---------CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH--HHHHHHHHhhhccceeeecC
Q 046637 27 YRDRPSVVYG---------DVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVP--AMYELHFGVPMAGAVLCTLN 95 (301)
Q Consensus 27 ~~~~~al~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~ 95 (301)
.++.++++.. +-.+|.+.+...+..... ..+++++|++....|-.- .+...++..+..|...+..+
T Consensus 791 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~ 867 (1140)
T PRK06814 791 DPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAA---RIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYP 867 (1140)
T ss_pred CCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHH---hhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEec
Confidence 4566666641 136888888776665544 347889999888777532 23344566677887777665
Q ss_pred CCCCHHHHHHHHHhcCceEEEEcCCchhh
Q 046637 96 TRHDSAMVSVLLRHSEAKIIFVDYQLLPI 124 (301)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (301)
.....+.+.+.+++.++..+.........
T Consensus 868 ~~~~~~~~~~~i~~~~~t~~~~~p~~l~~ 896 (1140)
T PRK06814 868 SPLHYRIIPELIYDTNATILFGTDTFLNG 896 (1140)
T ss_pred CcccHHHHHHHHHhcCCEEEEecHHHHHH
Confidence 55556677788888999888876554443
No 323
>PRK05638 threonine synthase; Validated
Probab=41.22 E-value=1.4e+02 Score=27.09 Aligned_cols=91 Identities=11% Similarity=-0.070 Sum_probs=50.9
Q ss_pred CccEEEECCe--eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHH
Q 046637 29 DRPSVVYGDV--QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVL 106 (301)
Q Consensus 29 ~~~al~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 106 (301)
.++++..++. +-||++= .+..+.....+.| .+.|+. ...+-.-..+.++|...|..+..+-|...+..-...
T Consensus 80 ~~l~~K~E~~nPtGSfKdR--~a~~~i~~a~~~g---~~~vv~-aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~ 153 (442)
T PRK05638 80 ENVYIKDETRNPTGSFRDR--LATVAVSYGLPYA---ANGFIV-ASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQ 153 (442)
T ss_pred CeEEEEeCCCCCCCChHHH--HHHHHHHHHHHcC---CCEEEE-eCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHH
Confidence 3566666553 4455542 2222222222333 234444 333444444555566788765555555556677889
Q ss_pred HHhcCceEEEEcCCchhhH
Q 046637 107 LRHSEAKIIFVDYQLLPIA 125 (301)
Q Consensus 107 l~~~~~~~vi~~~~~~~~~ 125 (301)
++..+++++.++....+..
T Consensus 154 ~~~~GA~vi~v~~~~~~~~ 172 (442)
T PRK05638 154 MIAFGAKIIRYGESVDEAI 172 (442)
T ss_pred HHhcCcEEEEECCCHHHHH
Confidence 9999999999986654443
No 324
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=40.89 E-value=3.2e+02 Score=25.86 Aligned_cols=84 Identities=5% Similarity=-0.163 Sum_probs=58.1
Q ss_pred eeeechHHHHHHHHHHHHHhh--CCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-CCCC---HHHHHHHHHhcCcc
Q 046637 200 GVICSHRGAYLNSLAAALFNE--MGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-RTVN---AKEIFDNITRHKVT 273 (301)
Q Consensus 200 ~v~~s~~~l~~~~~~~~~~~~--~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~~~~---~~~~~~~i~~~~~t 273 (301)
...+|+..|...+......+. +.++|++...++-.- --+...++++..|+..+.+ +... +..+...++..++.
T Consensus 53 ~~~~Ty~el~~~v~~lA~~L~~~~~~gd~V~i~~~n~~-e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~ 131 (631)
T PRK07769 53 ARDLTWSQFGARNRAVGARLQQVTKPGDRVAILAPQNL-DYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPS 131 (631)
T ss_pred eeEeeHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCh-HHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCC
Confidence 356899998877666555442 578899888877543 2223467788888887765 2222 46788889999999
Q ss_pred eecCChHHHHH
Q 046637 274 HFGGAPTVLNM 284 (301)
Q Consensus 274 ~~~~~P~~~~~ 284 (301)
.+++.+.....
T Consensus 132 ~vi~~~~~~~~ 142 (631)
T PRK07769 132 AILTTTDSAEG 142 (631)
T ss_pred EEEEChHHHHH
Confidence 99888766544
No 325
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=40.08 E-value=72 Score=26.20 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCC--CCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcC---ceEEEEcCCc
Q 046637 50 VKLASGLAHLGI--SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSE---AKIIFVDYQL 121 (301)
Q Consensus 50 ~~la~~L~~~gv--~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~---~~~vi~~~~~ 121 (301)
+.+...+...+. -++.+++.+++...+ ++-+.|..+..+++..+.+.+...+.... .++++.-+..
T Consensus 63 ~~~~~~l~~~~~~~~~~~~i~aVG~~Ta~------~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~ 133 (248)
T COG1587 63 RFFFEALKEQGLDALKNKKIAAVGEKTAE------ALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNG 133 (248)
T ss_pred HHHHHHHHhhcccccccCeEEEEcHHHHH------HHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCC
Confidence 333444444442 245667777776433 45677777777777777777777776663 3555554443
No 326
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=39.85 E-value=2.3e+02 Score=23.80 Aligned_cols=77 Identities=17% Similarity=0.113 Sum_probs=56.4
Q ss_pred HHHHHHHhhhcCCccEEEECC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 17 ISFLERSAVVYRDRPSVVYGD------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 17 ~~~l~~~~~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
...+++..++-|+.-.+...| ...|=.++.+++..+...|.+.+++ +.++.-|..-.++.-.-=.+....
T Consensus 18 LsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik----~lVIACNTASa~al~~LR~~~~iP 93 (269)
T COG0796 18 LSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIK----ALVIACNTASAVALEDLREKFDIP 93 (269)
T ss_pred HHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCC----EEEEecchHHHHHHHHHHHhCCCC
Confidence 357788888999998888866 4688899999999999999998866 778888876655444333344444
Q ss_pred eeecCCC
Q 046637 91 LCTLNTR 97 (301)
Q Consensus 91 ~v~l~~~ 97 (301)
++-+-|.
T Consensus 94 VvGviPa 100 (269)
T COG0796 94 VVGVIPA 100 (269)
T ss_pred EEEeccc
Confidence 5544444
No 327
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=39.54 E-value=1.4e+02 Score=21.31 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=42.4
Q ss_pred HHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCC---chhhHHHHHHHhccc
Q 046637 78 YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ---LLPIAQGAFEILSKT 135 (301)
Q Consensus 78 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~---~~~~~~~~~~~~~~~ 135 (301)
.++....-..|.-++.+-+..+.+++...+.+.+|++|..+.. ....+.+..+.+.+.
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~ 77 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLREL 77 (122)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhc
Confidence 3444445678889999999999999999999999999888754 334445555555443
No 328
>PRK06145 acyl-CoA synthetase; Validated
Probab=39.11 E-value=2.3e+02 Score=25.67 Aligned_cols=80 Identities=13% Similarity=-0.108 Sum_probs=56.9
Q ss_pred eechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecC
Q 046637 202 ICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGG 277 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 277 (301)
.+|...+...+......+ +...++++....|-.- .-+...++++..|+..+..+ ......+...+++.++..+..
T Consensus 27 ~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~-~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~ 105 (497)
T PRK06145 27 EISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSA-AFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLV 105 (497)
T ss_pred ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEE
Confidence 588888877766665544 5678888887776432 22334677788888887764 567888889999999888876
Q ss_pred ChHHH
Q 046637 278 APTVL 282 (301)
Q Consensus 278 ~P~~~ 282 (301)
.+...
T Consensus 106 ~~~~~ 110 (497)
T PRK06145 106 DEEFD 110 (497)
T ss_pred ccchh
Confidence 55443
No 329
>PRK06815 hypothetical protein; Provisional
Probab=38.82 E-value=2.5e+02 Score=24.03 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=37.1
Q ss_pred cCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch
Q 046637 71 APNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL 122 (301)
Q Consensus 71 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (301)
...+-.-....++|...|..+..+-|..........++..++++++++....
T Consensus 74 aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~~~ 125 (317)
T PRK06815 74 ASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGDAL 125 (317)
T ss_pred ECCChHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 3445555666777888888665555555556777888999999999987643
No 330
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=38.78 E-value=2e+02 Score=25.75 Aligned_cols=57 Identities=7% Similarity=-0.032 Sum_probs=43.0
Q ss_pred EEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhh
Q 046637 68 AALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPI 124 (301)
Q Consensus 68 ~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (301)
.+....+=.-....++|...|..++..=|...+.+-...++..+++++.++......
T Consensus 137 VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~~~~~a 193 (404)
T cd06447 137 IAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYETDYSKA 193 (404)
T ss_pred EEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECCCHHHH
Confidence 344444555666777888999877766677788888999999999999998654443
No 331
>PRK06721 threonine synthase; Reviewed
Probab=38.60 E-value=1.9e+02 Score=25.21 Aligned_cols=90 Identities=9% Similarity=-0.075 Sum_probs=51.9
Q ss_pred CCccEEEECCeee--eHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCC-CHHHHH
Q 046637 28 RDRPSVVYGDVQY--TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH-DSAMVS 104 (301)
Q Consensus 28 ~~~~al~~~~~~~--Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~-~~~~l~ 104 (301)
+.++++..++..- |+++- .+........+.|. ++|... ..+-.-..+.++|...|..++.+-|.. .+..-.
T Consensus 42 g~~i~~K~E~~nptGS~KdR--~a~~~i~~a~~~g~---~~vV~a-SsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~ 115 (352)
T PRK06721 42 GIQLYGKYEGANPTGSFKDR--GMVMAVAKAKEEGS---EAIICA-STGNTSASAAAYAARLGMKCIIVIPEGKIAHGKL 115 (352)
T ss_pred CCeEEEEecCCCCccchHHH--HHHHHHHHHHHCCC---CEEEEE-CCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHH
Confidence 3467777776333 33332 22222233445552 234333 334444556667778888666655553 355666
Q ss_pred HHHHhcCceEEEEcCCchh
Q 046637 105 VLLRHSEAKIIFVDYQLLP 123 (301)
Q Consensus 105 ~~l~~~~~~~vi~~~~~~~ 123 (301)
..++..++++++++.....
T Consensus 116 ~~~~~~GA~V~~~~~~~~~ 134 (352)
T PRK06721 116 AQAVAYGAEIISIEGNFDD 134 (352)
T ss_pred HHHHHcCCEEEEECCCHHH
Confidence 7889999999999875443
No 332
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=38.57 E-value=2.5e+02 Score=23.96 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=33.9
Q ss_pred CCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhc----CceEEEEcC
Q 046637 62 SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHS----EAKIIFVDY 119 (301)
Q Consensus 62 ~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~----~~~~vi~~~ 119 (301)
++||.|.+.. +.+.....++...|+.++.+. ....+++..+++.. +.+++++..
T Consensus 83 ~~gd~Vl~~~---~~~~~~~~~~~~~g~~~~~~~-~~~~~~le~~i~~~~~~~~~~~v~~~~ 140 (349)
T cd06454 83 GKGDLIISDS---LNHASIIDGIRLSGAKKRIFK-HNDMEDLEKLLREARRPYGKKLIVTEG 140 (349)
T ss_pred CCCCEEEEeh---hhhHHHHHHHHHcCCceEEec-CCCHHHHHHHHHHhhccCCCeEEEEec
Confidence 6788877743 334444455667787776663 44667888888763 456666643
No 333
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=38.15 E-value=2.5e+02 Score=23.84 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=37.8
Q ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 57 AHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 57 ~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
...++++|++|+|.+....-..++.+|....|+.++.+.. +.+. ...++..+.+.++-.
T Consensus 156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~--~~~~-~~~~~~~g~~~v~~~ 214 (338)
T PRK09422 156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDI--NDDK-LALAKEVGADLTINS 214 (338)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeC--ChHH-HHHHHHcCCcEEecc
Confidence 3457899999999986555666666666555876666633 2333 344466777666554
No 334
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=38.15 E-value=2.5e+02 Score=23.72 Aligned_cols=84 Identities=7% Similarity=-0.007 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHH---HHHHHHHhcCceEEE
Q 046637 42 WKETHQRCVKLASGLAHL--GISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSA---MVSVLLRHSEAKIIF 116 (301)
Q Consensus 42 y~el~~~~~~la~~L~~~--gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~---~l~~~l~~~~~~~vi 116 (301)
++++.++.+.+-..+++. .+....+..+...+...++.--+++-..+..-.--...-++. ++...++..+.++||
T Consensus 152 ~~~~~~~L~~l~~~~~~~l~~~~~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if 231 (287)
T cd01137 152 AAAYKAKLKALDEWAKAKFATIPAEKRKLVTSEGAFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVF 231 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCEEEEecccHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 445555555555555442 333334566677777777776666655443211112223444 455667888999999
Q ss_pred EcCCchhhH
Q 046637 117 VDYQLLPIA 125 (301)
Q Consensus 117 ~~~~~~~~~ 125 (301)
++...-...
T Consensus 232 ~e~~~~~~~ 240 (287)
T cd01137 232 VESTVNDRL 240 (287)
T ss_pred EeCCCChHH
Confidence 988766543
No 335
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=38.07 E-value=1.7e+02 Score=23.37 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=49.4
Q ss_pred CCccEEEECCeeeeHHH-HHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHH
Q 046637 28 RDRPSVVYGDVQYTWKE-THQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAM 102 (301)
Q Consensus 28 ~~~~al~~~~~~~Ty~e-l~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 102 (301)
...+++++.+......+ ..+.+.++++.|.++| .+.+.+...=-+=++.=++...|..++-+.|....+.
T Consensus 14 ~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g-----~~V~tGG~~GiMea~~~gA~~~gg~~vGi~p~~~~~~ 84 (205)
T COG1611 14 IRQIVVICGSARGIEPEEYYELARELGRELAKRG-----LLVITGGGPGVMEAVARGALEAGGLVVGILPGLLHEQ 84 (205)
T ss_pred cceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-----cEEEeCCchhhhhHHHHHHHHcCCeEEEecCCCchhh
Confidence 45677777776544455 8999999999999887 3444444433455566677789999999988876654
No 336
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=38.06 E-value=2.2e+02 Score=23.25 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=5.2
Q ss_pred HHHHhcCceEEE
Q 046637 105 VLLRHSEAKIIF 116 (301)
Q Consensus 105 ~~l~~~~~~~vi 116 (301)
..++..+.+.++
T Consensus 123 ~~~~~~g~~~i~ 134 (242)
T cd04724 123 EAAKEYGLDLIF 134 (242)
T ss_pred HHHHHcCCcEEE
Confidence 333444544433
No 337
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=37.76 E-value=74 Score=22.67 Aligned_cols=32 Identities=31% Similarity=0.329 Sum_probs=26.2
Q ss_pred CccEEEECCeeeeHHHHHHHHHHHHHHHHhcC
Q 046637 29 DRPSVVYGDVQYTWKETHQRCVKLASGLAHLG 60 (301)
Q Consensus 29 ~~~al~~~~~~~Ty~el~~~~~~la~~L~~~g 60 (301)
|+++.+..+.-+|+.||.++...+...+...|
T Consensus 2 D~IvAvVn~eiIt~sel~~~~~~~~~~~~~~~ 33 (118)
T PF09312_consen 2 DRIVAVVNDEIITQSELEQRLAQLKAQIQQQG 33 (118)
T ss_dssp --EEEEESSSEEEHHHHHHHHHHHHHHHHTTT
T ss_pred CeEEEEECCcCcCHHHHHHHHHHHHHHHHhcC
Confidence 67888899999999999999998888776654
No 338
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=37.56 E-value=1.5e+02 Score=24.37 Aligned_cols=85 Identities=13% Similarity=0.224 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCC--CCCHH---HHHHHHHhcCceEE
Q 046637 42 WKETHQRCVKLASGLAHL-GISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNT--RHDSA---MVSVLLRHSEAKII 115 (301)
Q Consensus 42 y~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~--~~~~~---~l~~~l~~~~~~~v 115 (301)
++++.++...+...+.+. .=-++ +..+...+...++.-.+++--.|.. -..+ ..+++ ++...++..++++|
T Consensus 127 ~~~~~~~L~~l~~~~~~~~~~~~~-~~~v~~h~~~~Y~~~~~gl~~~~~~--~~~~~~~ps~~~l~~l~~~ik~~~v~~i 203 (256)
T PF01297_consen 127 AEKYLKELDELDAEIKEKLAKLPG-RPVVVYHDAFQYFAKRYGLKVIGVI--EISPGEEPSPKDLAELIKLIKENKVKCI 203 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSG-GEEEEEESTTHHHHHHTT-EEEEEE--SSSSSSSS-HHHHHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHHHHHHHhhcccC-CeEEEEChHHHHHHHhcCCceeeee--ccccccCCCHHHHHHHHHHhhhcCCcEE
Confidence 455555666666655543 11123 5666777788888888877666644 2223 23444 55666788899999
Q ss_pred EEcCCchhhHHHHH
Q 046637 116 FVDYQLLPIAQGAF 129 (301)
Q Consensus 116 i~~~~~~~~~~~~~ 129 (301)
|++........+..
T Consensus 204 ~~e~~~~~~~~~~l 217 (256)
T PF01297_consen 204 FTEPQFSSKLAEAL 217 (256)
T ss_dssp EEETTS-THHHHHH
T ss_pred EecCCCChHHHHHH
Confidence 99987666544433
No 339
>PRK09224 threonine dehydratase; Reviewed
Probab=37.47 E-value=3.3e+02 Score=25.22 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=55.1
Q ss_pred hhhcCCccEEEECCee--eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHH
Q 046637 24 AVVYRDRPSVVYGDVQ--YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSA 101 (301)
Q Consensus 24 ~~~~~~~~al~~~~~~--~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~ 101 (301)
.+..+.++++..++.. -||+. ....+.++. |.+....+| | +....+-......++|...|..++.+-|...+.
T Consensus 30 s~~~g~~i~lK~E~lqptgSfK~-RgA~n~i~~-l~~~~~~~g--v-V~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~ 104 (504)
T PRK09224 30 SARLGNQVLLKREDLQPVFSFKL-RGAYNKMAQ-LTEEQLARG--V-ITASAGNHAQGVALSAARLGIKAVIVMPVTTPD 104 (504)
T ss_pred HHHhCCEEEEEecCCCCCCCChH-HHHHHHHHh-hhHHhcCCE--E-EEECcCHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 3334457777777643 34444 111222222 332111222 3 223344455566677888998766666666667
Q ss_pred HHHHHHHhcCceEEEEcCCchhh
Q 046637 102 MVSVLLRHSEAKIIFVDYQLLPI 124 (301)
Q Consensus 102 ~l~~~l~~~~~~~vi~~~~~~~~ 124 (301)
.-...++..+++++++.+...+.
T Consensus 105 ~K~~~~r~~GA~Vi~~g~~~~~a 127 (504)
T PRK09224 105 IKVDAVRAFGGEVVLHGDSFDEA 127 (504)
T ss_pred HHHHHHHhCCCEEEEECCCHHHH
Confidence 77788999999999997654433
No 340
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=37.42 E-value=76 Score=27.30 Aligned_cols=48 Identities=17% Similarity=0.138 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCHHH-HHHHHHhhhccce-eeecCCC
Q 046637 50 VKLASGLAHLGISPGDVVAALAPNVPAM-YELHFGVPMAGAV-LCTLNTR 97 (301)
Q Consensus 50 ~~la~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~-~v~l~~~ 97 (301)
+.++..|.++|+.++++|.+++.++..+ .-+.+.+...|.- +..|+-+
T Consensus 89 ~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG 138 (320)
T PLN02723 89 EAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGG 138 (320)
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCC
Confidence 5678889999999999999998776544 4556778888874 3345433
No 341
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=37.23 E-value=3.8e+02 Score=25.66 Aligned_cols=97 Identities=14% Similarity=0.034 Sum_probs=65.6
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHH---HhhCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEee-C
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAAL---FNEMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQ-R 256 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~-~ 256 (301)
..+.++.+.-.-++.+. .+ ++...++........ ..++..+|++...+|+.- -.+...+++...|+-.... .
T Consensus 78 ~~~~~a~~~~~~~~~~~--~~-~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~-e~~ia~lA~~r~Gai~~~v~~ 153 (626)
T KOG1175|consen 78 GGDKVAIIFEGNEGGDT--EV-WTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIP-EAVIAMLACARIGAIHSSVFA 153 (626)
T ss_pred CCCCcEEEEEecCCCce--EE-EEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCCh-HHHHHHHHHhhcCeEEEEeec
Confidence 45566666665555555 34 788887765554433 457889999999999743 2233345666666555544 4
Q ss_pred CCCHHHHHHHHHhcCcceecCChHH
Q 046637 257 TVNAKEIFDNITRHKVTHFGGAPTV 281 (301)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P~~ 281 (301)
.|.+.+++..++..++..+++.-.+
T Consensus 154 ~fs~~~l~~Rl~~~~~k~i~t~d~~ 178 (626)
T KOG1175|consen 154 GFSAKELLDRLQDSKAKVIITQDVV 178 (626)
T ss_pred cCCHHHHHHHHHhcCCCEEEEEeee
Confidence 8999999999999998888765443
No 342
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=37.11 E-value=3.2e+02 Score=24.71 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=31.4
Q ss_pred CCCCCEEEEEcCCCHHH-HHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 61 ISPGDVVAALAPNVPAM-YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
+++||.|++..+--... ....-.+.+.|+.++.++. ...+++...++. +.++|+++
T Consensus 100 l~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~-~d~e~l~~ai~~-~tklV~l~ 156 (431)
T PRK08248 100 ASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP-SDPENFEAAITD-KTKALFAE 156 (431)
T ss_pred hCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC-CCHHHHHHhcCC-CCeEEEEE
Confidence 57888877654322111 1122234566777777654 356677776654 56666664
No 343
>PF02073 Peptidase_M29: Thermophilic metalloprotease (M29); InterPro: IPR000787 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M29 (aminopeptidase T family, clan M-). The protein fold of the peptidase domain and the active site residues are not known for any members of the thermophilic metallo-aminopeptidases family.; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 2AYI_D 1ZJC_A.
Probab=37.03 E-value=96 Score=27.69 Aligned_cols=45 Identities=29% Similarity=0.259 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCEEEEEcCCCH-HH-HHHHHHhhhccc
Q 046637 45 THQRCVKLASGLAHL--GISPGDVVAALAPNVP-AM-YELHFGVPMAGA 89 (301)
Q Consensus 45 l~~~~~~la~~L~~~--gv~~g~~V~i~~~n~~-~~-~~~~lA~~~~G~ 89 (301)
+..+.+++|..+.+. +|++|+.|.|.++-.. ++ -...-.+.++|+
T Consensus 3 ~~~~l~kyA~llV~~glnvq~Gq~v~I~~~~~~~~l~r~l~~~ay~aGA 51 (398)
T PF02073_consen 3 FDERLEKYAELLVKYGLNVQPGQKVLIRAPVEAAPLARALVEEAYEAGA 51 (398)
T ss_dssp HHHHHHHHHHHHHHTTT---TT-EEEEEEETT-HHHHHHHHHHHHHTT-
T ss_pred chHHHHHHHHHHHHhccCCCCCCEEEEEecccHHHHHHHHHHHHHHcCC
Confidence 567788899988875 6799999999877643 33 345556778888
No 344
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.01 E-value=2.8e+02 Score=24.07 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=50.8
Q ss_pred eeeHHHHHHHHHHHHHHHH---hcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEE
Q 046637 39 QYTWKETHQRCVKLASGLA---HLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKII 115 (301)
Q Consensus 39 ~~Ty~el~~~~~~la~~L~---~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (301)
.+|+.|= ..++-|+-+++ ..|+++|++|+|++. +|--+++.+++...|+.=+.+ ....+++ .++.++.+++++
T Consensus 143 ~vs~eeG-Al~ePLsV~~HAcr~~~vk~Gs~vLV~GA-GPIGl~t~l~Aka~GA~~VVi-~d~~~~R-le~Ak~~Ga~~~ 218 (354)
T KOG0024|consen 143 NVSFEEG-ALIEPLSVGVHACRRAGVKKGSKVLVLGA-GPIGLLTGLVAKAMGASDVVI-TDLVANR-LELAKKFGATVT 218 (354)
T ss_pred CCchhhc-ccccchhhhhhhhhhcCcccCCeEEEECC-cHHHHHHHHHHHHcCCCcEEE-eecCHHH-HHHHHHhCCeEE
Confidence 4555441 22233444444 348999999999988 577777888888888865544 2333344 345556899888
Q ss_pred EEcCCch
Q 046637 116 FVDYQLL 122 (301)
Q Consensus 116 i~~~~~~ 122 (301)
.-.+...
T Consensus 219 ~~~~~~~ 225 (354)
T KOG0024|consen 219 DPSSHKS 225 (354)
T ss_pred eeccccc
Confidence 8776543
No 345
>PRK06108 aspartate aminotransferase; Provisional
Probab=36.96 E-value=2.8e+02 Score=24.10 Aligned_cols=22 Identities=9% Similarity=-0.195 Sum_probs=14.7
Q ss_pred CCCCCCeeeechHHHHHHHHHH
Q 046637 194 TTSSPKGVICSHRGAYLNSLAA 215 (301)
Q Consensus 194 tTG~pK~v~~s~~~l~~~~~~~ 215 (301)
.+|..-|..+..+.++......
T Consensus 236 ~~G~RiG~~~~~~~~~~~~~~~ 257 (382)
T PRK06108 236 MTGWRLGWLVAPPALGQVLEKL 257 (382)
T ss_pred CcccceeeeeCCHHHHHHHHHH
Confidence 3466678888888777655443
No 346
>PRK00865 glutamate racemase; Provisional
Probab=36.75 E-value=2.3e+02 Score=23.51 Aligned_cols=55 Identities=18% Similarity=0.264 Sum_probs=44.4
Q ss_pred HHHHHHhhhcCCccEEEECC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH
Q 046637 18 SFLERSAVVYRDRPSVVYGD------VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA 76 (301)
Q Consensus 18 ~~l~~~~~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~ 76 (301)
..+++..+..|+...+.+.| ..-|-.|+.+++.+....|.+.|.. ..++.-|+..
T Consensus 19 tvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d----~iVIaCNTa~ 79 (261)
T PRK00865 19 TVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEYGVK----MLVIACNTAS 79 (261)
T ss_pred HHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCC----EEEEeCchHH
Confidence 57778888899998888866 4678899999999999999987654 6666667655
No 347
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=36.62 E-value=3.3e+02 Score=24.80 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=41.0
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCC-CCCHHHHHHHHHhcCceEEEEcCC
Q 046637 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNT-RHDSAMVSVLLRHSEAKIIFVDYQ 120 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~-~~~~~~l~~~l~~~~~~~vi~~~~ 120 (301)
+.+||+|++=.| +.......+-......+.||++. +...+.+...++..+++++++...
T Consensus 176 ~~pGd~v~vE~P-tY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~ 235 (459)
T COG1167 176 LDPGDTVLVEDP-TYPGALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPT 235 (459)
T ss_pred CCCCCEEEEcCC-CcHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCC
Confidence 347777776655 34444455555555556666654 578899999999999999998754
No 348
>PRK07409 threonine synthase; Validated
Probab=36.42 E-value=2e+02 Score=25.04 Aligned_cols=90 Identities=14% Similarity=-0.022 Sum_probs=51.2
Q ss_pred CCccEEEECCeee--eHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCC-CHHHHH
Q 046637 28 RDRPSVVYGDVQY--TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH-DSAMVS 104 (301)
Q Consensus 28 ~~~~al~~~~~~~--Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~-~~~~l~ 104 (301)
+.++++..++..- |+++- -+..+...+.+.|. +.| +....+-.-..+.++|...|..+..+-|.. .+..-.
T Consensus 45 g~~i~~K~E~~nptGSfKdR--~a~~~l~~a~~~g~---~~i-v~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~ 118 (353)
T PRK07409 45 GVEVYVKYEGLNPTGSFKDR--GMTMAVTKAKEEGA---KAV-ICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKL 118 (353)
T ss_pred CCeEEEEecCCCCccchHHH--HHHHHHHHHHHCCC---CEE-EEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhH
Confidence 3467777766333 33322 22223333444442 233 333334445667777888888655554543 455666
Q ss_pred HHHHhcCceEEEEcCCchh
Q 046637 105 VLLRHSEAKIIFVDYQLLP 123 (301)
Q Consensus 105 ~~l~~~~~~~vi~~~~~~~ 123 (301)
..++..++++++++....+
T Consensus 119 ~~~~~~GA~Vi~~~~~~~~ 137 (353)
T PRK07409 119 AQAVMYGAEIIQIDGNFDD 137 (353)
T ss_pred HHHHhcCCEEEEECCCHHH
Confidence 6778899999999875433
No 349
>PRK07503 methionine gamma-lyase; Provisional
Probab=36.24 E-value=2.1e+02 Score=25.49 Aligned_cols=56 Identities=18% Similarity=0.347 Sum_probs=29.7
Q ss_pred CCCCCEEEEEcCCCH-HHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 61 ISPGDVVAALAPNVP-AMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 61 v~~g~~V~i~~~n~~-~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
+++||.|.+..+.-. -+.....++...|+.+..++.. ..+++...++. +.++|+++
T Consensus 101 l~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-d~~~l~~~i~~-~tklV~le 157 (403)
T PRK07503 101 LRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT-DPAALKAAISD-KTRMVYFE 157 (403)
T ss_pred cCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCC-CHHHHHHhcCc-cCcEEEEe
Confidence 577887766443211 1111223344567766666543 45666666643 56666653
No 350
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=36.22 E-value=2.8e+02 Score=25.51 Aligned_cols=84 Identities=10% Similarity=-0.095 Sum_probs=52.1
Q ss_pred CCCCCEEEEEcCCCHH----HHHHHHHhhhccceeeecCCCCCHHHH--HHHHHhcCceEEEEcCCchhhHHHHHHHhcc
Q 046637 61 ISPGDVVAALAPNVPA----MYELHFGVPMAGAVLCTLNTRHDSAMV--SVLLRHSEAKIIFVDYQLLPIAQGAFEILSK 134 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~----~~~~~lA~~~~G~~~v~l~~~~~~~~l--~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~ 134 (301)
+..+++|.|++.++.+ ..++..++.++|+.+-..-|+.-.+.. ...+..-+++++++.+.-.....++.....
T Consensus 33 i~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g~~~~~~~~~~~liItvD~G~~~~~~i~~~~~- 111 (491)
T COG0608 33 IEKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYGAIRKLKEEGADLIITVDNGSGSLEEIARAKE- 111 (491)
T ss_pred HHcCCEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccchHHHHHHhcCCCEEEEECCCcccHHHHHHHHh-
Confidence 3567799999999876 456777888889655444444332221 236667777777777655544444443322
Q ss_pred ccCCCCceEEccCC
Q 046637 135 TSAKLPLLVLVPEC 148 (301)
Q Consensus 135 ~~~~~~~i~~~~~~ 148 (301)
.-..+++.|.+
T Consensus 112 ---~g~~vIVtDHH 122 (491)
T COG0608 112 ---LGIDVIVTDHH 122 (491)
T ss_pred ---CCCcEEEECCC
Confidence 23567777777
No 351
>PRK08198 threonine dehydratase; Provisional
Probab=36.04 E-value=3.2e+02 Score=24.37 Aligned_cols=61 Identities=8% Similarity=-0.019 Sum_probs=41.4
Q ss_pred CCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhH
Q 046637 64 GDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIA 125 (301)
Q Consensus 64 g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (301)
++.|...+ .+=.-....++|...|..++.+-|...+.+-...++..+++++++.....+..
T Consensus 70 ~~~vv~aS-sGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~ 130 (404)
T PRK08198 70 ARGVVAAS-AGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGDVYDEAL 130 (404)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 33444433 34444555578889998777666766777778888999999999976544433
No 352
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=35.98 E-value=2.8e+02 Score=23.99 Aligned_cols=60 Identities=7% Similarity=-0.090 Sum_probs=31.9
Q ss_pred CCCCCCEEEEEcCCC-HHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 60 GISPGDVVAALAPNV-PAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 60 gv~~g~~V~i~~~n~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
|..++..+.++.+++ ..+..++.++..-|..++...+..-...+....+..++++.....
T Consensus 51 ~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~ 111 (368)
T PRK13479 51 TGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDT 111 (368)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHcCCcEEEEEC
Confidence 555544445455554 445555556655554444444444333445666777777666643
No 353
>PLN02970 serine racemase
Probab=35.91 E-value=2.9e+02 Score=23.84 Aligned_cols=54 Identities=7% Similarity=0.006 Sum_probs=38.1
Q ss_pred EcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchh
Q 046637 70 LAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP 123 (301)
Q Consensus 70 ~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (301)
....+-.-..+.++|...|..+..+-|...+++....++..+++++.++.....
T Consensus 80 ~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~~~~~ 133 (328)
T PLN02970 80 THSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEPTVES 133 (328)
T ss_pred EECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCCCHHH
Confidence 334455566667777888886665555556666677899999999999875443
No 354
>PRK09265 aminotransferase AlaT; Validated
Probab=35.83 E-value=3.1e+02 Score=24.24 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=8.1
Q ss_pred HHHHHHHhcCccee
Q 046637 262 EIFDNITRHKVTHF 275 (301)
Q Consensus 262 ~~~~~i~~~~~t~~ 275 (301)
.+.+.+.++++-+.
T Consensus 351 ~~~~~l~~~gv~v~ 364 (404)
T PRK09265 351 FVLDLLLQEKVLLV 364 (404)
T ss_pred HHHHHHHhCCEEEE
Confidence 35566667766443
No 355
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=35.79 E-value=1.1e+02 Score=23.87 Aligned_cols=57 Identities=12% Similarity=0.132 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHhhhcCCccEEEECC----eeeeHHHH--HHHHHHHHHHHHhcCCCCCCEEEEE
Q 046637 13 PLTPISFLERSAVVYRDRPSVVYGD----VQYTWKET--HQRCVKLASGLAHLGISPGDVVAAL 70 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~al~~~~----~~~Ty~el--~~~~~~la~~L~~~gv~~g~~V~i~ 70 (301)
.....+-+....+++|....++.++ .+=.|.+- .++++.++.+|...|+.++ +|.+.
T Consensus 98 ~~~~L~~~a~~L~~~p~~~i~V~GHTD~~Gs~~yN~~LS~rRA~aV~~~L~~~Gv~~~-~i~~~ 160 (190)
T COG2885 98 AQATLDELAKYLKKNPITRILVEGHTDSTGSDEYNQALSERRAEAVADYLVSQGVVAD-RISTV 160 (190)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEecCCCCCCHHHhHHHHHHHHHHHHHHHHHcCCCcc-cEEEE
Confidence 3445566777888899877777654 34455543 5688999999999999888 66654
No 356
>PRK07868 acyl-CoA synthetase; Validated
Probab=35.65 E-value=3.4e+02 Score=27.66 Aligned_cols=81 Identities=10% Similarity=-0.080 Sum_probs=59.1
Q ss_pred eechHHHHHHHHHHHHHh---hCCCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceecCC
Q 046637 202 ICSHRGAYLNSLAAALFN---EMGLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFGGA 278 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~ 278 (301)
.+|+..+...+..+...+ ++.+++++...++-.- --+...+.++..|+..+.+... ..+...++..+++.+++.
T Consensus 472 ~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~-e~v~a~lA~~~aGav~vpl~p~--~~l~~il~~s~~~~li~~ 548 (994)
T PRK07868 472 VHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRP-SALVAIAALSRLGAVAVLMPPD--TDLAAAVRLGGVTEIITD 548 (994)
T ss_pred eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHhcCCEEEEeCCc--hhHHHHHhccCCeEEEEC
Confidence 689999988777666554 6788999888777432 2233467888899998887642 467778888899998887
Q ss_pred hHHHHHH
Q 046637 279 PTVLNMI 285 (301)
Q Consensus 279 P~~~~~l 285 (301)
+..+..+
T Consensus 549 ~~~~~~~ 555 (994)
T PRK07868 549 PTNLEAA 555 (994)
T ss_pred hHHHHHH
Confidence 7766554
No 357
>cd07050 BMC_EutL_repeat2 ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 2. EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 2 (the second BMC domain of EutL).
Probab=35.59 E-value=72 Score=21.06 Aligned_cols=39 Identities=23% Similarity=0.070 Sum_probs=31.2
Q ss_pred HHHHhc-CCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 54 SGLAHL-GISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 54 ~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
.+|.+. |++.|+.++.+...-.|....+=|++++.-+-+
T Consensus 4 sYls~~agi~eGe~lAYLIapPlEa~y~lDaALKAAdV~~ 43 (87)
T cd07050 4 SYLSKTAGIAEGEALAYLIAPPLEAMYGLDAALKAADVEL 43 (87)
T ss_pred hhhHHhcCCCCCCeeeeeecCcHHHHHHHHHHHHhhceee
Confidence 456654 999999999998888898888888888775433
No 358
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=35.56 E-value=1.1e+02 Score=25.42 Aligned_cols=176 Identities=15% Similarity=0.039 Sum_probs=101.6
Q ss_pred cEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhc
Q 046637 31 PSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHS 110 (301)
Q Consensus 31 ~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~ 110 (301)
++++|...++.-..=.+.+...+..|..--.+..|+|+++..++.+ .-+.++|..+.+.+...|+..
T Consensus 82 vfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~-------------A~lll~pT~sv~~~~~~L~~l 148 (261)
T COG1240 82 VFVVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEK-------------AELLLPPTSSVELAERALERL 148 (261)
T ss_pred EEEEeCcccchhHHHHHHHHHHHHHHHHHHHHccceEEEEEecCCc-------------ceEEeCCcccHHHHHHHHHhC
Confidence 4455566777666667777888888777668899999999887654 346788999999999999887
Q ss_pred CceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCCCCcccccCCCCccHHHHHhhccccccCCCCCCCCceEEEe
Q 046637 111 EAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGEPVSTVASSSGNLEYESLLAIGKLREVRRPKDECDPIALNY 190 (301)
Q Consensus 111 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 190 (301)
.+-- -....+.+....+... ... ...+...+.+|+-
T Consensus 149 ~~GG---~TPL~~aL~~a~ev~~------------------------------------r~~-----r~~p~~~~~~vvi 184 (261)
T COG1240 149 PTGG---KTPLADALRQAYEVLA------------------------------------REK-----RRGPDRRPVMVVI 184 (261)
T ss_pred CCCC---CCchHHHHHHHHHHHH------------------------------------Hhh-----ccCCCcceEEEEE
Confidence 6521 0112222222211111 110 1133456677888
Q ss_pred ccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCC-CEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCCCHHHHHHHHHh
Q 046637 191 TSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLM-PTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTVNAKEIFDNITR 269 (301)
Q Consensus 191 TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~-~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~~~~~~~~~i~~ 269 (301)
|-|-++.|-.--..+..+. ....+..... -.+..+-+-+...|+..- .+-..|+..+-+++.+...+...+++
T Consensus 185 TDGr~n~~~~~~~~~e~~~-----~a~~~~~~g~~~lvid~e~~~~~~g~~~~-iA~~~Gg~~~~L~~l~~~~i~~~~r~ 258 (261)
T COG1240 185 TDGRANVPIPLGPKAETLE-----AASKLRLRGIQLLVIDTEGSEVRLGLAEE-IARASGGEYYHLDDLSDDSIVSAVRQ 258 (261)
T ss_pred eCCccCCCCCCchHHHHHH-----HHHHHhhcCCcEEEEecCCccccccHHHH-HHHHhCCeEEecccccchHHHHHHHh
Confidence 8887755443333333322 2222222222 234444454544555442 23556888888887777777666654
No 359
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=35.47 E-value=1.9e+02 Score=25.49 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCCHHHHHHHH--Hhhhccc--eeeecCC-----CCCHHHHHHHHHhcCceEEEEcC
Q 046637 61 ISPGDVVAALAPNVPAMYELHF--GVPMAGA--VLCTLNT-----RHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~~~~l--A~~~~G~--~~v~l~~-----~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
+++||.|.+..+.....+.... ++...|+ ..+++.. ....+++...+...++++++...
T Consensus 102 ~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~ 169 (402)
T cd00378 102 LEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGA 169 (402)
T ss_pred cCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecC
Confidence 4689988887665332221111 1334554 3444433 23678888888766788777643
No 360
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=35.40 E-value=2.5e+02 Score=24.29 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=32.4
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeec--CCC--CCHHHHHHHHHhcCceEEEEc
Q 046637 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL--NTR--HDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l--~~~--~~~~~l~~~l~~~~~~~vi~~ 118 (301)
+++||.|++-.|.-. ....++...|+.++.+ +.. ...+++...++..++++++..
T Consensus 97 ~~~gd~Vlv~~p~y~---~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~ 155 (351)
T PRK14807 97 INKGDVVIYPHPSFA---MYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLC 155 (351)
T ss_pred cCCCCEEEEeCCChH---HHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEe
Confidence 568888887655422 2333445566655544 332 456777777765567776654
No 361
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=35.07 E-value=2.4e+02 Score=24.07 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=36.7
Q ss_pred HHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce-eeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 56 LAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV-LCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 56 L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~-~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
+...++.+|++|+|.+....-..++.+| ...|+. ++.+.. +.+.+ .+++..+++.++..
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~a-k~~G~~~vi~~~~--~~~~~-~~~~~~ga~~~i~~ 215 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLA-RALGAEDVIGVDP--SPERL-ELAKALGADFVINS 215 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECC--CHHHH-HHHHHhCCCEEEcC
Confidence 4556889999999997644444444444 556776 555543 33333 44566777666654
No 362
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=34.84 E-value=3e+02 Score=25.40 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=51.2
Q ss_pred eHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCC--CH---HHHHHHHHhcCce
Q 046637 41 TWKETHQRCVKLASGLAHL--GISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH--DS---AMVSVLLRHSEAK 113 (301)
Q Consensus 41 Ty~el~~~~~~la~~L~~~--gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~--~~---~~l~~~l~~~~~~ 113 (301)
.++++..+.+.+-..+++. .+....+..+...+...++.--+++-..|.+ -+++.. ++ .++...++..+.+
T Consensus 345 Na~ay~~eL~~Ld~~~~~~la~ip~k~r~vvt~H~af~YLa~~YGL~~~~~~--~~~~~~ePS~~~L~~Li~~IK~~~V~ 422 (479)
T TIGR03772 345 NASAYIHRLERLDTYVRRTIATIPPSRRHLITTHDAYSYLGQAYGLNIAGFV--TPNPAVEPSLADRRRLTRTIENLKVP 422 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCEEEEECCcHHHHHHHCCCeEEeee--ccCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 3444555555555544443 2323346777777788888888887776632 234332 33 4566777888999
Q ss_pred EEEEcCCchhh
Q 046637 114 IIFVDYQLLPI 124 (301)
Q Consensus 114 ~vi~~~~~~~~ 124 (301)
+||.+.+....
T Consensus 423 ~IF~Epq~~~~ 433 (479)
T TIGR03772 423 AVFLEPNLAAR 433 (479)
T ss_pred EEEEeCCCCCc
Confidence 99999876533
No 363
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=34.81 E-value=2.5e+02 Score=23.19 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=45.2
Q ss_pred HHHHHHHhhhcCCccEEEECC------eeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCHH
Q 046637 17 ISFLERSAVVYRDRPSVVYGD------VQYTWKETHQRCVKLASGLA-HLGISPGDVVAALAPNVPA 76 (301)
Q Consensus 17 ~~~l~~~~~~~~~~~al~~~~------~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~n~~~ 76 (301)
...++...+..|+...+.+.| ..-|-.|+.+.+.+....|. +.|++ +.++.-|...
T Consensus 11 ltv~~~l~~~~p~~~~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~~g~d----~ivIaCNTA~ 73 (251)
T TIGR00067 11 LSVLKEIRKQLPKEHYIYVGDTKRFPYGEKSPEFILEYVLELLTFLKERHNIK----LLVVACNTAS 73 (251)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCC----EEEEeCchHH
Confidence 356777788889998888766 46788999999999999999 87775 6677777775
No 364
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=34.73 E-value=59 Score=26.16 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=21.8
Q ss_pred HhhhccceeeecCCCCCHHHHHHHHHhcC
Q 046637 83 GVPMAGAVLCTLNTRHDSAMVSVLLRHSE 111 (301)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 111 (301)
++..+|+.+++|++..+.+++..+++..+
T Consensus 32 ~i~~aG~~pv~ip~~~~~~~~~~~l~~id 60 (217)
T PF07722_consen 32 AIEAAGGRPVPIPYDADDEELDELLDRID 60 (217)
T ss_dssp HHHHTT-EEEEE-SS--HHHHHHHHHCSS
T ss_pred HHHHcCCEEEEEccCCCHHHHHHHHhhcC
Confidence 45677999999999999999999998776
No 365
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=34.63 E-value=1.1e+02 Score=21.60 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=23.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCC
Q 046637 39 QYTWKETHQRCVKLASGLAHLGISPGD 65 (301)
Q Consensus 39 ~~Ty~el~~~~~~la~~L~~~gv~~g~ 65 (301)
.++|+++.+.++.+|..|.+.+.....
T Consensus 4 ~~~~~~~~~~~~~la~~i~~~~~~~~~ 30 (125)
T PF00156_consen 4 ILSPEQIEALAERLAEQIKESGFDFDV 30 (125)
T ss_dssp EEBHHHHHHHHHHHHHHHHHHTTTSSE
T ss_pred EEcHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 579999999999999999998766544
No 366
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=34.49 E-value=3.2e+02 Score=23.94 Aligned_cols=106 Identities=14% Similarity=0.016 Sum_probs=67.8
Q ss_pred HHHHhhhcCCccEEEECCe--eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCC
Q 046637 20 LERSAVVYRDRPSVVYGDV--QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTR 97 (301)
Q Consensus 20 l~~~~~~~~~~~al~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~ 97 (301)
.....++.+.++++..++- .=||+ +.-.-+.+.+ |...+-++.-.|+-...|+-.-+ .|||.+.|...+-.=|.
T Consensus 31 s~~Ls~~~g~~v~lK~E~lQ~~gSFK-~RGA~n~i~~-Ls~e~~~~~gViaaSaGNHaQGv--A~aa~~lGi~a~IvMP~ 106 (347)
T COG1171 31 SPSLSERLGAEIYLKRENLQPVGSFK-IRGAYNKLSS-LSEEEERAAGVIAASAGNHAQGV--AYAAKRLGIKATIVMPE 106 (347)
T ss_pred chhhHHhhCceEEEeeccCcccccch-hhhHHHHHHh-cChhhhhcCceEEecCCcHHHHH--HHHHHHhCCCEEEEecC
Confidence 3344445777888888772 22332 1112222222 33221122226777788877765 57899999887777788
Q ss_pred CCHHHHHHHHHhcCceEEEEcCCchhhHHHHH
Q 046637 98 HDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAF 129 (301)
Q Consensus 98 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 129 (301)
.++..-..-++..+..+++..+.+.+......
T Consensus 107 ~tp~~Kv~a~r~~GaeVil~g~~~dda~~~a~ 138 (347)
T COG1171 107 TTPKIKVDATRGYGAEVILHGDNFDDAYAAAE 138 (347)
T ss_pred CCcHHHHHHHHhcCCEEEEECCCHHHHHHHHH
Confidence 88888899999999999999887765544433
No 367
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=34.40 E-value=1.1e+02 Score=21.80 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=14.0
Q ss_pred CCCEEEEEcCCCHH---HHHHHHHhhhccce
Q 046637 63 PGDVVAALAPNVPA---MYELHFGVPMAGAV 90 (301)
Q Consensus 63 ~g~~V~i~~~n~~~---~~~~~lA~~~~G~~ 90 (301)
+...|.+....... .+-.+=.|..+|..
T Consensus 84 ~~~~v~I~aD~~~~~~~vv~v~d~~~~aG~~ 114 (122)
T TIGR02803 84 KDTTIFFRADKTVDYGDLMKVMNLLRQAGYL 114 (122)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 34456666665543 33444445555553
No 368
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=34.24 E-value=1.6e+02 Score=20.44 Aligned_cols=50 Identities=12% Similarity=-0.019 Sum_probs=35.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeec
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL 94 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (301)
..+.+.++.+ .+.+.+..+++.|.+++.++.....+...+...|..-+-.
T Consensus 41 iniP~~~l~~-------~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~ 90 (104)
T PRK10287 41 INIPLKEVKE-------RIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTHAEN 90 (104)
T ss_pred EECCHHHHHH-------HHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCeEEe
Confidence 4677776543 3455566667789999999888777778888888765544
No 369
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=34.04 E-value=2e+02 Score=24.09 Aligned_cols=56 Identities=18% Similarity=0.081 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCC
Q 046637 64 GDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120 (301)
Q Consensus 64 g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (301)
++.| +....+-.-..+.++|...|..++.+-|...++.-...++..+++++.+...
T Consensus 56 ~~~v-v~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 111 (306)
T PF00291_consen 56 GRTV-VGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD 111 (306)
T ss_dssp TSEE-EEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST
T ss_pred ccee-eeeccCCceehhhhhhhhccccceeeeccccccccccceeeecceEEEcccc
Confidence 3456 6666666666777788888987777777778888899999999999988764
No 370
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=34.02 E-value=2.3e+02 Score=22.28 Aligned_cols=98 Identities=7% Similarity=-0.070 Sum_probs=59.9
Q ss_pred CCeeeeHHHHHHHHHHHHHHHHh----cC----CCCCCEEEEEcCCC-H---HHHHHHHHhhhccceeeecCCCCCHHHH
Q 046637 36 GDVQYTWKETHQRCVKLASGLAH----LG----ISPGDVVAALAPNV-P---AMYELHFGVPMAGAVLCTLNTRHDSAMV 103 (301)
Q Consensus 36 ~~~~~Ty~el~~~~~~la~~L~~----~g----v~~g~~V~i~~~n~-~---~~~~~~lA~~~~G~~~v~l~~~~~~~~l 103 (301)
...+++-.|..-.++.+-..+.. .. -+...+|.+.+..+ . ...+.....-..|.-++.+-++.+.+++
T Consensus 48 ~~gei~va~~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~ 127 (197)
T TIGR02370 48 EDGELFLPHVMMSADAMLAGIKVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTV 127 (197)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHH
Confidence 44677776665555444433221 11 11223555554443 2 2344444555689999999999999999
Q ss_pred HHHHHhcCceEEEEcCC---chhhHHHHHHHhc
Q 046637 104 SVLLRHSEAKIIFVDYQ---LLPIAQGAFEILS 133 (301)
Q Consensus 104 ~~~l~~~~~~~vi~~~~---~~~~~~~~~~~~~ 133 (301)
...++..+|++|..+-. ......+..+.+.
T Consensus 128 v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~ 160 (197)
T TIGR02370 128 VEKVKKEKPLMLTGSALMTTTMYGQKDINDKLK 160 (197)
T ss_pred HHHHHHcCCCEEEEccccccCHHHHHHHHHHHH
Confidence 99999999999888743 2333444444443
No 371
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=33.98 E-value=3.5e+02 Score=24.23 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=41.0
Q ss_pred CCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCC-HHHHHHHHHhcCceEEEEcCCchhhHHHHHH
Q 046637 63 PGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHD-SAMVSVLLRHSEAKIIFVDYQLLPIAQGAFE 130 (301)
Q Consensus 63 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~-~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~ 130 (301)
.|.+|+|++.....+-++-+-. .+|..++....... .+.....++.......+.++.....+.+...
T Consensus 273 ~Gkrv~i~gd~~~~~~l~~~L~-elGm~~v~~~t~~~~~~~~~~~~~~l~~~~~v~~~~d~~~l~~~i~ 340 (407)
T TIGR01279 273 RGKKIFFFGDNLLELPLARFLK-RCGMEVVECGTPYIHRRFHAAELALLEGGVRIVEQPDFHRQLQRIR 340 (407)
T ss_pred CCCEEEEECCchHHHHHHHHHH-HCCCEEEEecCCCCChHHHHHHHhhcCCCCeEEeCCCHHHHHHHHH
Confidence 5889999998766555444444 48988887766554 3444566666655555555555444444433
No 372
>PRK08638 threonine dehydratase; Validated
Probab=33.79 E-value=3.2e+02 Score=23.70 Aligned_cols=55 Identities=4% Similarity=-0.082 Sum_probs=40.1
Q ss_pred cCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhH
Q 046637 71 APNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIA 125 (301)
Q Consensus 71 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (301)
...+-.-....++|...|..+..+-|...+......++..+++++++++...+..
T Consensus 81 ~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~ 135 (333)
T PRK08638 81 CSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGDNFNDTI 135 (333)
T ss_pred eCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECcCHHHHH
Confidence 3334556666777888898776666666667788899999999999976554433
No 373
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=33.76 E-value=2.8e+02 Score=23.01 Aligned_cols=77 Identities=12% Similarity=0.010 Sum_probs=43.7
Q ss_pred eeeeHHHHHHHHHHH---HHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce-eeecCCCCCHHHHHHHHHhcCce
Q 046637 38 VQYTWKETHQRCVKL---ASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV-LCTLNTRHDSAMVSVLLRHSEAK 113 (301)
Q Consensus 38 ~~~Ty~el~~~~~~l---a~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~-~v~l~~~~~~~~l~~~l~~~~~~ 113 (301)
..+++.+........ .+.+.+.+..+|++|+|++.-..-..++.+|- ..|+. ++.++ .+++. ..+++..+++
T Consensus 92 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G~G~vG~~~~~~ak-~~G~~~Vi~~~--~~~~r-~~~a~~~Ga~ 167 (280)
T TIGR03366 92 DDLPDAVAAPAGCATATVMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAA-AAGAARVVAAD--PSPDR-RELALSFGAT 167 (280)
T ss_pred CCCCHHHhhHhhhHHHHHHHHHHhccCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEEC--CCHHH-HHHHHHcCCc
Confidence 346665543322222 22355567779999999987545555555554 55764 55553 23333 3556677777
Q ss_pred EEEEc
Q 046637 114 IIFVD 118 (301)
Q Consensus 114 ~vi~~ 118 (301)
.++..
T Consensus 168 ~~i~~ 172 (280)
T TIGR03366 168 ALAEP 172 (280)
T ss_pred EecCc
Confidence 66643
No 374
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=33.51 E-value=3.8e+02 Score=24.59 Aligned_cols=99 Identities=8% Similarity=-0.168 Sum_probs=61.6
Q ss_pred CCCCceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhC-CCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeCCC-
Q 046637 181 DECDPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEM-GLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRTV- 258 (301)
Q Consensus 181 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~~~- 258 (301)
.++.++++.-.++. ...+|+..|...+..+...+.- .+++++...++-.- --+...+.++..|+..++.+.+
T Consensus 15 ~~~~~a~~~~~~~~-----~~~~ty~el~~~~~~lA~~L~~~~~g~~V~l~~~~~~-e~~~~~la~~~~G~~~~~~~~~~ 88 (525)
T PRK05851 15 SGRDLVVLDRESGL-----WRRHPWPEVHGRAENVAARLLDRDRPGAVGLVGEPTV-ELVAAIQGAWLAGAAVSILPGPV 88 (525)
T ss_pred CCCceEEeCCCCCc-----ceeecHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCCH-HHHHHHHHHHHcCCCCcCCCCCC
Confidence 35555554432221 3678999998887777766643 67888877776433 2233467788888875544321
Q ss_pred ---CH----HHHHHHHHhcCcceecCChHHHHHH
Q 046637 259 ---NA----KEIFDNITRHKVTHFGGAPTVLNMI 285 (301)
Q Consensus 259 ---~~----~~~~~~i~~~~~t~~~~~P~~~~~l 285 (301)
++ ......+...++..+.+.+..+..+
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 122 (525)
T PRK05851 89 RGADDGRWADATLTRFAGIGVRTVLSHGSHLERL 122 (525)
T ss_pred CccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHH
Confidence 12 3445567788888888877665543
No 375
>KOG2631 consensus Class II aldolase/adducin N-terminal domain protein [Carbohydrate transport and metabolism]
Probab=33.49 E-value=1.2e+02 Score=24.31 Aligned_cols=49 Identities=27% Similarity=0.387 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhcCCccEEEECC-eeeeHHHH----------HHHHHHHHHHHHhcCCCCC
Q 046637 16 PISFLERSAVVYRDRPSVVYGD-VQYTWKET----------HQRCVKLASGLAHLGISPG 64 (301)
Q Consensus 16 ~~~~l~~~~~~~~~~~al~~~~-~~~Ty~el----------~~~~~~la~~L~~~gv~~g 64 (301)
+.|-+..+.+.||+..|+...+ .-+=|++- .+.--.++-.+.++|+.+.
T Consensus 169 L~D~l~~aie~YP~tcAVLVR~HGvyvWG~TWekaKt~~EcydYLfelaikm~klgipp~ 228 (238)
T KOG2631|consen 169 LKDSLKKAIELYPDTCAVLVRRHGVYVWGPTWEKAKTMTECYDYLFELAIKMKKLGIPPE 228 (238)
T ss_pred HHHHHHHHHHhCCcceEEEEecCcEEEecCcHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 3478899999999999999854 34444433 3344455666777787654
No 376
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=33.44 E-value=1.1e+02 Score=20.81 Aligned_cols=68 Identities=21% Similarity=0.342 Sum_probs=45.6
Q ss_pred HHHhhhccceeeec--CCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCC
Q 046637 81 HFGVPMAGAVLCTL--NTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECG 149 (301)
Q Consensus 81 ~lA~~~~G~~~v~l--~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 149 (301)
..+-..+|.-.+.. ++..-.+.+..++++-+..+|+.+....+.+.+......... ..+.++.+.+..
T Consensus 10 v~gFrLaGv~~~~~~~~~ee~~~~l~~l~~~~~~gIIii~e~~~~~~~~~l~~~~~~~-~~P~iv~IP~~~ 79 (95)
T PF01990_consen 10 VLGFRLAGVEGVYVNTDPEEAEEALKELLKDEDVGIIIITEDLAEKIRDELDEYREES-SLPLIVEIPSKE 79 (95)
T ss_dssp HHHHHHTTSEEEEESHSHHHHHHHHHHHHHHTTEEEEEEEHHHHTTHHHHHHHHHHTS-SSSEEEEESTTC
T ss_pred HHHHHHcCCCCccCCCCHHHHHHHHHHHhcCCCccEEEeeHHHHHHHHHHHHHHHhcc-CCceEEEcCCCC
Confidence 34555667666666 444455678888888899999999888877777665552221 457777776553
No 377
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=33.19 E-value=1.4e+02 Score=19.54 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 51 KLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 51 ~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.+...+...++.+++.|.+++.++.....+...+...|..
T Consensus 43 ~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 43 EFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred HHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 3444556678888999999998887777777777777765
No 378
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=33.16 E-value=3.2e+02 Score=23.53 Aligned_cols=106 Identities=15% Similarity=0.142 Sum_probs=58.7
Q ss_pred CCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHH------HHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Q 046637 9 ANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKL------ASGLAHLGISPGDVVAALAPNVPAMYELHF 82 (301)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~l------a~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 82 (301)
+++.++--.+-+....++||+.+.+.+-+ |.+++...++-+ ..-.... ..+++|.+. |. -.+.-+
T Consensus 103 CsmA~~~~~~~~~~~~~~~P~~~vV~YvN---tsA~vKA~~Di~cTSsNAvkvVe~~--~~~~~Iif~-PD---~~Lg~y 173 (324)
T COG0379 103 CSMADMITAEEVRAFKEKHPDAPVVTYVN---TSAEVKAEADICCTSSNAVKVVESA--LDGDKILFL-PD---KNLGRY 173 (324)
T ss_pred CCcccCCCHHHHHHHHHHCCCCceEEEee---ChHHHHhhcCeEEecchHHHHHHhc--cCCCcEEEc-Cc---HHHHHH
Confidence 45666777788899999999999999877 444544443211 1111121 345555443 22 222223
Q ss_pred Hhhhccc-e------eeecCCCCCHHHHHHHHHhcCceEEEEcCCchh
Q 046637 83 GVPMAGA-V------LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP 123 (301)
Q Consensus 83 A~~~~G~-~------~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (301)
-....|. - .+.++..++.+++..+-+.+.=..|++..++..
T Consensus 174 va~~tg~k~ii~w~G~C~VH~~ft~~~i~~~k~~~Pda~vlvHPEC~~ 221 (324)
T COG0379 174 VAKQTGAKKIILWPGHCIVHEEFTAEDIEELKEKYPDAEVLVHPECPP 221 (324)
T ss_pred HHHHcCCCcEEEECCccchhhhcCHHHHHHHHHHCCCCEEEECCCCCH
Confidence 3334443 1 234455667777776666665555666655544
No 379
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=33.05 E-value=3.6e+02 Score=24.20 Aligned_cols=61 Identities=15% Similarity=-0.024 Sum_probs=45.5
Q ss_pred CCCCEEEEEcCCCHHHHHHHHHhhhccceeeec--CCCCCHHHHHHHHHhcCceEEEEcCCch
Q 046637 62 SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL--NTRHDSAMVSVLLRHSEAKIIFVDYQLL 122 (301)
Q Consensus 62 ~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l--~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (301)
=+|-+|+.+.+-.++-...+..+...|+-+... +|.++.++....|...+..++--.....
T Consensus 30 l~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v~a~~~~~~ 92 (406)
T TIGR00936 30 LKGARIAACLHVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPVFAWRGETN 92 (406)
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceEEEecCCCH
Confidence 347788888888888888888888888865544 7777888888888887877665444433
No 380
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=32.91 E-value=3e+02 Score=23.17 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=48.1
Q ss_pred eHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCC--CCCHH---HHHHHHHhcCceEE
Q 046637 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNT--RHDSA---MVSVLLRHSEAKII 115 (301)
Q Consensus 41 Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~--~~~~~---~l~~~l~~~~~~~v 115 (301)
.++++.+..+.+-..+++.--....+..+...+...++.-.+++-..+.. -+.+ .-++. ++...++..+.++|
T Consensus 155 N~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~H~af~Yl~~~~gl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~I 232 (286)
T cd01019 155 NLEAFNARLAELDATIKERLAPVKTKPFFVFHDAYGYFEKRYGLTQAGVF--TIDPEIDPGAKRLAKIRKEIKEKGATCV 232 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCeEEEecccHHHHHHHcCCceeeee--cCCCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 35556666665555555431112345566666677777666655433321 2222 23445 45566678899999
Q ss_pred EEcCCchhhHHH
Q 046637 116 FVDYQLLPIAQG 127 (301)
Q Consensus 116 i~~~~~~~~~~~ 127 (301)
|++........+
T Consensus 233 f~e~~~~~~~~~ 244 (286)
T cd01019 233 FAEPQFHPKIAE 244 (286)
T ss_pred EecCCCChHHHH
Confidence 998876554333
No 381
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=32.83 E-value=3.3e+02 Score=23.67 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=17.0
Q ss_pred HHHHHHHHh-cCceEEEEcCCchhh
Q 046637 101 AMVSVLLRH-SEAKIIFVDYQLLPI 124 (301)
Q Consensus 101 ~~l~~~l~~-~~~~~vi~~~~~~~~ 124 (301)
+....+++. .+|++||+|+.+...
T Consensus 130 ~~~~~l~~~~~~~diIi~DDG~Qh~ 154 (336)
T COG1663 130 DAAKALLAAHLGCDIIVLDDGLQHY 154 (336)
T ss_pred HHHHHHHhhCCCCCEEEEcCcchhh
Confidence 445555553 689999999887654
No 382
>PTZ00297 pantothenate kinase; Provisional
Probab=32.33 E-value=4.2e+02 Score=28.41 Aligned_cols=85 Identities=11% Similarity=-0.139 Sum_probs=63.2
Q ss_pred eeechHHHHHHHHHHHHH---hhCCCCCEEEEeccchhhhhhH-HHHHHHHhCCeEEeeCCCCHHHHHHHHHhcCcceec
Q 046637 201 VICSHRGAYLNSLAAALF---NEMGLMPTYLWCVPMFHCNGWC-LTWAVAAQGGTNVCQRTVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 201 v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~ 276 (301)
..+|+..+...+...... +++.++|++...++-. ..|. ..++++..|+..|.+. .++..+...++..++.+++
T Consensus 456 ~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~--~Ewvia~lA~~~~GaV~VPly-~t~~eL~yIL~~S~akvVf 532 (1452)
T PTZ00297 456 EWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEAS--RNIVILEVACALYGFTTLPLV-GKGSTMRTLIDEHKIKVVF 532 (1452)
T ss_pred eEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HHHHHHHHHHHHcCCEEEeCC-CCHHHHHHHHHhcCCcEEE
Confidence 358999887776665544 4788999988877743 3444 3577788888888764 3567888999999999999
Q ss_pred CChHHHHHHHcC
Q 046637 277 GAPTVLNMIANA 288 (301)
Q Consensus 277 ~~P~~~~~l~~~ 288 (301)
+....+..+.+.
T Consensus 533 v~~~~l~kl~~i 544 (1452)
T PTZ00297 533 ADRNSVAAILTC 544 (1452)
T ss_pred EchhHHHHHHhh
Confidence 988888877653
No 383
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=32.12 E-value=2.3e+02 Score=22.75 Aligned_cols=56 Identities=20% Similarity=0.101 Sum_probs=39.7
Q ss_pred CCEEEEeccc-hhhhhhHH-HHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceecCCh
Q 046637 224 MPTYLWCVPM-FHCNGWCL-TWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 224 ~~~~l~~~p~-~h~~g~~~-~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P 279 (301)
+.+++.+.+- .|..|... ....-..|-.++... +..++++.+.+.+++++++.++-
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~ 147 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSG 147 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 3455555553 88888654 333344677777775 67899999999999999986553
No 384
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=31.96 E-value=1.4e+02 Score=19.10 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHhhhcCC-------ccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Q 046637 13 PLTPISFLERSAVVYRD-------RPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAP 72 (301)
Q Consensus 13 ~~~~~~~l~~~~~~~~~-------~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ 72 (301)
..++.++++....++|. ...+...++.++ .+.-++.||+|+++-|
T Consensus 25 ~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~---------------~~~~l~~gD~v~i~pp 76 (80)
T cd00754 25 GATVGELLDALEARYPGLLEELLARVRIAVNGEYVR---------------LDTPLKDGDEVAIIPP 76 (80)
T ss_pred CCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC---------------CCcccCCCCEEEEeCC
Confidence 56888888888888775 233334454444 2234788999998865
No 385
>PLN02263 serine decarboxylase
Probab=31.85 E-value=4.1e+02 Score=24.43 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=15.5
Q ss_pred CCceEEEeccCCCCCCCeeeechHH
Q 046637 183 CDPIALNYTSGTTSSPKGVICSHRG 207 (301)
Q Consensus 183 ~~~~~i~~TSGtTG~pK~v~~s~~~ 207 (301)
..++++.-|-||| ++|++=.-..
T Consensus 227 ~~P~iVvataGTT--~~GAiDpi~e 249 (470)
T PLN02263 227 DKPAIINVNIGTT--VKGAVDDLDL 249 (470)
T ss_pred CCcEEEEEEecCC--CCcCCCCHHH
Confidence 3578899999999 4555433333
No 386
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=31.80 E-value=1.2e+02 Score=25.66 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=45.8
Q ss_pred eeeeHHHHHHH------HHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecC
Q 046637 38 VQYTWKETHQR------CVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLN 95 (301)
Q Consensus 38 ~~~Ty~el~~~------~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~ 95 (301)
..+.|.++.+. .+.+...+...|+.+++.|.++|..+......++|+..+|....-++
T Consensus 202 iNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lY 265 (285)
T COG2897 202 INIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLY 265 (285)
T ss_pred cCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccc
Confidence 46889988871 22444445578999999999999999999999999999997766443
No 387
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=31.75 E-value=1.4e+02 Score=23.40 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=26.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEcCCCHHHH
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGIS-PGDVVAALAPNVPAMY 78 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~-~g~~V~i~~~n~~~~~ 78 (301)
.-+||.|+.+.+.++|..+.+. .+ ..+.|+-+..-+..+.
T Consensus 10 ~lis~~~I~~~i~~lA~~I~~~-~~~~~~vivgi~~Gg~~fa 50 (189)
T PLN02238 10 VLWTAEDISARVAELAAQIASD-YAGKSPVVLGVATGAFMFL 50 (189)
T ss_pred EEcCHHHHHHHHHHHHHHHHHH-cCCCCcEEEEEccCCHHHH
Confidence 4689999999999999999875 22 2243333444444443
No 388
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=31.74 E-value=2.4e+02 Score=24.20 Aligned_cols=88 Identities=13% Similarity=-0.065 Sum_probs=49.7
Q ss_pred ccEEEECC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCC-CHHHHHHH
Q 046637 30 RPSVVYGD--VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH-DSAMVSVL 106 (301)
Q Consensus 30 ~~al~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~-~~~~l~~~ 106 (301)
++++..++ .+-||++-- +..+-..+.+.| ....+....+=.-..+.++|...|.-++.+-|.. .+.+-...
T Consensus 40 ~i~~K~E~~nptGSfKdR~--a~~~l~~a~~~g----~~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~ 113 (328)
T TIGR00260 40 NLYVLELFHNPTLSFKDRG--MAVALTKALELG----NDTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQ 113 (328)
T ss_pred cEEehhhccCCchhhHhhh--HHHHHHHHHHcC----CCEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHH
Confidence 56666654 344555544 222222233434 2223333333333444477888888666666654 44666777
Q ss_pred HHhcCceEEEEcCCchh
Q 046637 107 LRHSEAKIIFVDYQLLP 123 (301)
Q Consensus 107 l~~~~~~~vi~~~~~~~ 123 (301)
++..++++++++....+
T Consensus 114 ~~~~GA~Vi~~~~~~~~ 130 (328)
T TIGR00260 114 ALGYNAEVVAIDGNFDD 130 (328)
T ss_pred HHhcCcEEEEecCCHHH
Confidence 77899999999875443
No 389
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=31.71 E-value=1.9e+02 Score=20.64 Aligned_cols=78 Identities=12% Similarity=0.296 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCCHHHHHHHHHhhhccce---------eeecCCCCCHHHHHHH----HHhcCceEEEEcCCchhhHHHHH
Q 046637 63 PGDVVAALAPNVPAMYELHFGVPMAGAV---------LCTLNTRHDSAMVSVL----LRHSEAKIIFVDYQLLPIAQGAF 129 (301)
Q Consensus 63 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~---------~v~l~~~~~~~~l~~~----l~~~~~~~vi~~~~~~~~~~~~~ 129 (301)
.+..|++++. .+.+.-+. .+|.- +...+...+.+++... +.+-+..+|+..+...+.+.+..
T Consensus 4 ~~~~IaVIGD--~Dtv~GF~---LaGi~~~~~~~~~nf~~v~~~t~~eei~~~~~~~l~~~digIIlIte~~a~~i~~~I 78 (115)
T TIGR01101 4 KGKLIAVIGD--EDTVVGFL---LGGIGEINKNRHPNFLVVDKNTTVSEIEDCFNRFLKRDDIAIILINQHIAEMIRHAV 78 (115)
T ss_pred CCcEEEEEec--HHHHHHHH---HhCCCccccccccceeeecCCCCHHHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHH
Confidence 4678999998 55554443 33432 3345565666665554 55567788888888888777776
Q ss_pred HHhccccCCCCceEEccCC
Q 046637 130 EILSKTSAKLPLLVLVPEC 148 (301)
Q Consensus 130 ~~~~~~~~~~~~i~~~~~~ 148 (301)
+...+ -+|.++.+.+.
T Consensus 79 ~~~~~---~~PaIieIP~k 94 (115)
T TIGR01101 79 DAHTR---SIPAVLEIPSK 94 (115)
T ss_pred HhcCC---cCCEEEEECCC
Confidence 66542 56888887763
No 390
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=31.66 E-value=3.8e+02 Score=23.96 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=23.5
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHH-hhhccceeeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 61 ISPGDVVAALAPNVPAMYELHFG-VPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~~~~lA-~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
+++||.|.+..+.-......+-. +...|..++.++. ...+++...++. ++++|+.+
T Consensus 96 l~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~-~d~~~l~~~i~~-~tklV~l~ 152 (405)
T PRK08776 96 LQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL-TDPRSLADALAQ-SPKLVLIE 152 (405)
T ss_pred hCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC-CCHHHHHHhcCc-CCeEEEEE
Confidence 45666665543332221111111 2233444444432 244555555532 45555543
No 391
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.58 E-value=3.3e+02 Score=23.22 Aligned_cols=80 Identities=9% Similarity=0.001 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCHHHH---HHHHHhhhcccee--eecCCCCCHHHHHHHHHhc----Cc
Q 046637 43 KETHQRCVKLASGLAHL-GISPGDVVAALAPNVPAMY---ELHFGVPMAGAVL--CTLNTRHDSAMVSVLLRHS----EA 112 (301)
Q Consensus 43 ~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~---~~~lA~~~~G~~~--v~l~~~~~~~~l~~~l~~~----~~ 112 (301)
+++.+....-...|++. |..|+=.+.+.+++..... .-.=+|...|..+ .-++...+.+++...++.. +.
T Consensus 11 ~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V 90 (293)
T PRK14185 11 AQIKQEIAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDV 90 (293)
T ss_pred HHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 34444444445556655 8887644444444432222 2244888999877 4566777888888777666 44
Q ss_pred eEEEEcCCch
Q 046637 113 KIIFVDYQLL 122 (301)
Q Consensus 113 ~~vi~~~~~~ 122 (301)
+-++.+-..-
T Consensus 91 ~GIlvqlPLP 100 (293)
T PRK14185 91 DGFIVQLPLP 100 (293)
T ss_pred CeEEEecCCC
Confidence 5677775543
No 392
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=31.35 E-value=1.8e+02 Score=20.09 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=43.3
Q ss_pred EEEEEcCCCHHHHHHHHHhhhccceeee-cCC-CCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceE
Q 046637 66 VVAALAPNVPAMYELHFGVPMAGAVLCT-LNT-RHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLV 143 (301)
Q Consensus 66 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~-l~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~ 143 (301)
++++++. .+.+ ++-..+|.-.+. ... ....+.+..++.+-+..+++.++.....+.+......... ..|.++
T Consensus 2 kIaVIGD--~dtv---~GFrLaGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~-~~P~ii 75 (100)
T PRK02228 2 EIAVIGS--PEFT---TGFRLAGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEES-VEPTVV 75 (100)
T ss_pred EEEEEeC--HHHH---HHHHHcCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcC-CCCEEE
Confidence 4667776 4443 334445653333 222 2233456666667788889998887776666555422221 567777
Q ss_pred EccC
Q 046637 144 LVPE 147 (301)
Q Consensus 144 ~~~~ 147 (301)
.+.+
T Consensus 76 ~IP~ 79 (100)
T PRK02228 76 TLGG 79 (100)
T ss_pred EECC
Confidence 7754
No 393
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=31.32 E-value=1.7e+02 Score=24.52 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHH---HHHHhcC
Q 046637 48 RCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVS---VLLRHSE 111 (301)
Q Consensus 48 ~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~---~~l~~~~ 111 (301)
+.+++...+.++++++|++|+=++.- .-.+ +..++-+.|+.+..+. .+.+... ..++..+
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcG-wG~~-~~~~a~~~g~~v~git--lS~~Q~~~a~~~~~~~g 109 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCG-WGGL-AIYAAERYGCHVTGIT--LSEEQAEYARERIREAG 109 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-T-TSHH-HHHHHHHH--EEEEEE--S-HHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCC-ccHH-HHHHHHHcCcEEEEEE--CCHHHHHHHHHHHHhcC
Confidence 34455566677899999999988764 3333 4445555588888774 4554444 3444444
No 394
>PRK08813 threonine dehydratase; Provisional
Probab=31.20 E-value=3.6e+02 Score=23.60 Aligned_cols=55 Identities=9% Similarity=-0.100 Sum_probs=38.4
Q ss_pred EEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchh
Q 046637 69 ALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLP 123 (301)
Q Consensus 69 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (301)
+....+=.-....++|...|..+..+=|...+......++.++++++.+.....+
T Consensus 85 V~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~~~~~ 139 (349)
T PRK08813 85 ICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGNSYDE 139 (349)
T ss_pred EEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHH
Confidence 3444455566667788888886655555556667778889999999999765443
No 395
>PRK06110 hypothetical protein; Provisional
Probab=31.08 E-value=3.4e+02 Score=23.27 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=38.0
Q ss_pred EEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHH
Q 046637 69 ALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQ 126 (301)
Q Consensus 69 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 126 (301)
+....+-.-..+.++|...|..+..+-|...+..-...++..+++++.++....+...
T Consensus 74 v~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~ 131 (322)
T PRK06110 74 ISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGEDFQAARE 131 (322)
T ss_pred EEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHH
Confidence 3344455566677788888875554444444455568899999999999765444333
No 396
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=31.03 E-value=4.2e+02 Score=24.34 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=53.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCC-CEEEEEcCCC--HHHHHHHHHhhhccceeeecCCC---CCHHHHHHHHHhcC
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPG-DVVAALAPNV--PAMYELHFGVPMAGAVLCTLNTR---HDSAMVSVLLRHSE 111 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g-~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~---~~~~~l~~~l~~~~ 111 (301)
-.+|.+.+...+..+.. ..++.++ |++...+|-. ..+...+++.+..|+..+...+. ..+..+..++++.+
T Consensus 170 v~~s~~~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~ 246 (545)
T PRK07768 170 VQITHGNLYANAEAMFV---AAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYR 246 (545)
T ss_pred EEEcHHHHHHHHHHHHH---hcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhC
Confidence 46899988776554433 3467776 7777666543 34444556667788887776553 25567788899999
Q ss_pred ceEEEEcCC
Q 046637 112 AKIIFVDYQ 120 (301)
Q Consensus 112 ~~~vi~~~~ 120 (301)
+.++.+...
T Consensus 247 ~~~~~~~~~ 255 (545)
T PRK07768 247 GTMTAAPNF 255 (545)
T ss_pred CEEEECchH
Confidence 988755433
No 397
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=30.99 E-value=1.7e+02 Score=22.11 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=27.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMY 78 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~ 78 (301)
..+||.|+.+.+.++|..+.+.| + -+.|.-+...+.-+.
T Consensus 8 ~~is~~~i~~~i~~la~~I~~~~-~-~d~vvgv~~GG~~fa 46 (156)
T PRK09177 8 FPVSWDQLHRDARALAWRLLPAG-Q-WKGIIAVTRGGLVPA 46 (156)
T ss_pred EEcCHHHHHHHHHHHHHHHHhhC-C-CCEEEEEecCCeehH
Confidence 35899999999999999998765 2 355544555444433
No 398
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=30.96 E-value=3.3e+02 Score=23.71 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=35.4
Q ss_pred hcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc-eeeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 58 HLGISPGDVVAALAPNVPAMYELHFGVPMAGA-VLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 58 ~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
..++++|++|+|.+....-..++.+|- ..|+ .++.++. +++. ..+++..+++.++..
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak-~~G~~~Vi~~~~--~~~r-~~~a~~~Ga~~~i~~ 243 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAV-AAGASQVVAVDL--NEDK-LALARELGATATVNA 243 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCcEEEEcC--CHHH-HHHHHHcCCceEeCC
Confidence 457999999999986545555555554 5576 4555533 3333 345567777766553
No 399
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=30.85 E-value=2.2e+02 Score=25.61 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=42.1
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCC---------CCH-----HHHHHHHHhcCc-e----EEEEcCCc
Q 046637 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTR---------HDS-----AMVSVLLRHSEA-K----IIFVDYQL 121 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~---------~~~-----~~l~~~l~~~~~-~----~vi~~~~~ 121 (301)
+++||.|. +-+|+=..+.. |+...|+.++.+.|. .+. +.+.+.++...- + ++++....
T Consensus 103 ~~~gd~VL-v~RN~HkSv~~--alil~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY 179 (417)
T PF01276_consen 103 CRPGDKVL-VDRNCHKSVYN--ALILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY 179 (417)
T ss_dssp TTTTCEEE-EETT--HHHHH--HHHHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T
T ss_pred cCCCCEEE-EcCCcHHHHHH--HHHHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC
Confidence 57999754 45565555544 999999999988773 233 788888876532 2 46665544
Q ss_pred h---hhHHHHHHHhc
Q 046637 122 L---PIAQGAFEILS 133 (301)
Q Consensus 122 ~---~~~~~~~~~~~ 133 (301)
. ..++.+.+.+.
T Consensus 180 ~Gv~~di~~I~~~~h 194 (417)
T PF01276_consen 180 YGVCYDIKEIAEICH 194 (417)
T ss_dssp TSEEE-HHHHHHHHC
T ss_pred CeEEECHHHHHHHhc
Confidence 3 33455555554
No 400
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=30.80 E-value=45 Score=27.69 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=51.5
Q ss_pred HHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCC--HHHHHHHHHh-cCceEEEEcCC
Q 046637 54 SGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHD--SAMVSVLLRH-SEAKIIFVDYQ 120 (301)
Q Consensus 54 ~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~--~~~l~~~l~~-~~~~~vi~~~~ 120 (301)
-.+.+.-.-||.-=.+.+|.+..++..--++.-++.+-+|++|.++ .+.+.++++. +.++++|..+.
T Consensus 100 D~iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tSP 169 (375)
T KOG0633|consen 100 DLIIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTSP 169 (375)
T ss_pred HHHHhheecCCccceeecCCcceeEEEEeecCCceEEEecCCCCccccHHHHHHHHhccccceEEEEcCC
Confidence 3445555678865667788888888888899999999999999864 5778888854 48899888654
No 401
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=30.79 E-value=1.6e+02 Score=27.71 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=53.5
Q ss_pred HHHhhhcCCccEEEECC--------ee-eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--H-----HHHHHh
Q 046637 21 ERSAVVYRDRPSVVYGD--------VQ-YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM--Y-----ELHFGV 84 (301)
Q Consensus 21 ~~~~~~~~~~~al~~~~--------~~-~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~--~-----~~~lA~ 84 (301)
+-+.-+-+|.+++...+ ++ -.=+-=.-+++.+.+.|.+. ++..|.|.|++...+++ + +..+|-
T Consensus 286 ~lAlgRGGDQVvIke~~~k~~fyGG~s~~~ekrTRvRaRvis~al~d~-i~e~d~VfImGHk~pDmDalGsAig~~~~A~ 364 (655)
T COG3887 286 DLALGRGGDQVVIKENNGKVRFYGGKSNPMEKRTRVRARVISTALSDI-IKESDNVFIMGHKFPDMDALGSAIGMQKFAS 364 (655)
T ss_pred HHHhccCCceEEEEcCCCceeeeCCCcchhHHhHHHHHHHHHHHHHHH-HhhcCcEEEEccCCCChHHHHHHHHHHHHHH
Confidence 34445567777766432 21 22233355677778888876 67799999999887653 2 222333
Q ss_pred hhccceeeecCCCCCHHHHHHHHHhc
Q 046637 85 PMAGAVLCTLNTRHDSAMVSVLLRHS 110 (301)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~ 110 (301)
+...-.++.++|..-.+.+++.++..
T Consensus 365 ~~~~~a~~v~dp~~~~pdveRai~~i 390 (655)
T COG3887 365 MNNKEAFAVLDPEDMSPDVERAINEI 390 (655)
T ss_pred hcccccEEEECccccChhHHHHHHHH
Confidence 33334588888876655555555544
No 402
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=30.74 E-value=1.2e+02 Score=25.42 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHhhhccce-eeecC
Q 046637 48 RCVKLASGLAHLGISPGDVVAALAPNVPA-MYELHFGVPMAGAV-LCTLN 95 (301)
Q Consensus 48 ~~~~la~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~-~v~l~ 95 (301)
..+.+...|.+.|+.+++.|.+++..+.. ...+.+.+...|.. +..++
T Consensus 71 ~~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~ 120 (281)
T PRK11493 71 RPETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILA 120 (281)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcC
Confidence 34678888999999999999999987553 33455677788865 33443
No 403
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=30.72 E-value=2.9e+02 Score=24.69 Aligned_cols=73 Identities=8% Similarity=0.135 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHh-cCCCCCCEEEEEcCCCHH-HHHHHHHhhhccceeeecCCC--------CCHHHHHHHHHhc------
Q 046637 47 QRCVKLASGLAH-LGISPGDVVAALAPNVPA-MYELHFGVPMAGAVLCTLNTR--------HDSAMVSVLLRHS------ 110 (301)
Q Consensus 47 ~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~--------~~~~~l~~~l~~~------ 110 (301)
+.+.++++.+.. .|+++---+++++|.+.- ...+-..+..+|+.++.++.. -++..++.+.+..
T Consensus 130 k~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~ 209 (413)
T PLN00020 130 KVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKK 209 (413)
T ss_pred HHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhc
Confidence 344566666654 478877789999999653 666777777889888877643 3555666666533
Q ss_pred --CceEEEEcC
Q 046637 111 --EAKIIFVDY 119 (301)
Q Consensus 111 --~~~~vi~~~ 119 (301)
+|.++|+|+
T Consensus 210 ~~aPcVLFIDE 220 (413)
T PLN00020 210 KGKMSCLFIND 220 (413)
T ss_pred cCCCeEEEEeh
Confidence 467777764
No 404
>PF05114 DUF692: Protein of unknown function (DUF692); InterPro: IPR007801 The proteins in this entry are functionally uncharacterised.; PDB: 3BWW_A.
Probab=30.68 E-value=97 Score=26.03 Aligned_cols=55 Identities=18% Similarity=0.139 Sum_probs=31.6
Q ss_pred ccCCCCCCCCHHHHHHHHhhhcCCccEEEECCeee-eHHHHHHHHHHHHHHHHhcC
Q 046637 6 RCSANYVPLTPISFLERSAVVYRDRPSVVYGDVQY-TWKETHQRCVKLASGLAHLG 60 (301)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~-Ty~el~~~~~~la~~L~~~g 60 (301)
++.....+..+++++++..++.+.++.++..|..+ .+.++.+.+.+....+.+.+
T Consensus 216 DtH~~~V~~~Vw~Ll~~~l~r~~~~~~llE~D~~~P~~~~l~~E~~~a~~~~~~~~ 271 (274)
T PF05114_consen 216 DTHSAPVPEEVWDLLEEVLRRFGPRPTLLERDNNIPPLAELLAELDRARAILARAR 271 (274)
T ss_dssp ---------HHHHHHHHHHTT-SS--EEE--------HHHHHHHHHHHHHHHHHH-
T ss_pred eCCCCCCCHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 34444556678999999999999988888777766 79999999999988887654
No 405
>PRK11823 DNA repair protein RadA; Provisional
Probab=30.56 E-value=4.2e+02 Score=24.12 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=33.0
Q ss_pred cCCCCCCEEEEEcCCCH--HHHHHHHHhhh--ccceeeecCCCCCHHHHHHHHHhcC
Q 046637 59 LGISPGDVVAALAPNVP--AMYELHFGVPM--AGAVLCTLNTRHDSAMVSVLLRHSE 111 (301)
Q Consensus 59 ~gv~~g~~V~i~~~n~~--~~~~~~lA~~~--~G~~~v~l~~~~~~~~l~~~l~~~~ 111 (301)
-|+.+|..+.+.++++. -.++..++... .|..++.++...+.+++....+..+
T Consensus 75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg 131 (446)
T PRK11823 75 GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLG 131 (446)
T ss_pred CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcC
Confidence 38899998999998864 23344444333 3656666666666666655555443
No 406
>PRK05967 cystathionine beta-lyase; Provisional
Probab=30.30 E-value=4e+02 Score=23.80 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=5.9
Q ss_pred CCCCCEEEEEcC
Q 046637 61 ISPGDVVAALAP 72 (301)
Q Consensus 61 v~~g~~V~i~~~ 72 (301)
+++||+|.+..+
T Consensus 100 l~~GD~Vlv~~~ 111 (395)
T PRK05967 100 LSPGDHALIVDS 111 (395)
T ss_pred cCCCCEEEEccC
Confidence 455555555433
No 407
>PRK08197 threonine synthase; Validated
Probab=30.09 E-value=3e+02 Score=24.48 Aligned_cols=88 Identities=16% Similarity=0.030 Sum_probs=48.0
Q ss_pred CccEEEECCe--eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHH
Q 046637 29 DRPSVVYGDV--QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVL 106 (301)
Q Consensus 29 ~~~al~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 106 (301)
.++.+..++. +-|+++=- +..+.....+.|. +.|..- ..+=.-..+.+++...|.-+..+-|...++.....
T Consensus 95 ~~l~~K~E~~nPtGSfKdRg--a~~~i~~a~~~g~---~~vv~a-SsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~ 168 (394)
T PRK08197 95 GRLWVKDEGLNPTGSFKARG--LAVGVSRAKELGV---KHLAMP-TNGNAGAAWAAYAARAGIRATIFMPADAPEITRLE 168 (394)
T ss_pred CcEEEEeCCCCCCcCcHHhH--HHHHHHHHHHcCC---CEEEEe-CCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHH
Confidence 3566666553 33444322 1222222334453 234332 23333444455566778755544455555566889
Q ss_pred HHhcCceEEEEcCCch
Q 046637 107 LRHSEAKIIFVDYQLL 122 (301)
Q Consensus 107 l~~~~~~~vi~~~~~~ 122 (301)
++..+++++.++....
T Consensus 169 ~~~~GA~Vi~v~~~~~ 184 (394)
T PRK08197 169 CALAGAELYLVDGLIS 184 (394)
T ss_pred HHHcCCEEEEECCCHH
Confidence 9999999999986543
No 408
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=29.95 E-value=3.2e+02 Score=23.68 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=68.5
Q ss_pred HHHHHHHHhhhcCCccEEEECCe--eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH----HHHHHHHhhhccc
Q 046637 16 PISFLERSAVVYRDRPSVVYGDV--QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA----MYELHFGVPMAGA 89 (301)
Q Consensus 16 ~~~~l~~~~~~~~~~~al~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~----~~~~~lA~~~~G~ 89 (301)
+...+.+-.+.+++...+...+. .-...-+..-+..|-..|-.-|+.+|..|-|+++.+.- .+-++-.+.+.|.
T Consensus 3 l~~~~~~i~k~~g~~~i~~lg~~~~~~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~ 82 (322)
T PF00154_consen 3 LEKALKQIEKKFGKGSIMRLGDNAESQNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGG 82 (322)
T ss_dssp HHHHHHHHHHHHTTTSSEETTS-C-GCSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhCCCceeecCCcccccccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccc
Confidence 34566667777777766654331 11112222333334344444588999999999988642 2333344567899
Q ss_pred eeeecCCCCCH--HHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCCCC
Q 046637 90 VLCTLNTRHDS--AMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPECGE 150 (301)
Q Consensus 90 ~~v~l~~~~~~--~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 150 (301)
.++.+++..+. +.+..+=-+. -+++++..+..+...+..+.+-.. ..-.++++|....
T Consensus 83 ~~a~ID~e~~ld~~~a~~lGvdl-~rllv~~P~~~E~al~~~e~lirs--g~~~lVVvDSv~a 142 (322)
T PF00154_consen 83 ICAFIDAEHALDPEYAESLGVDL-DRLLVVQPDTGEQALWIAEQLIRS--GAVDLVVVDSVAA 142 (322)
T ss_dssp EEEEEESSS---HHHHHHTT--G-GGEEEEE-SSHHHHHHHHHHHHHT--TSESEEEEE-CTT
T ss_pred eeEEecCcccchhhHHHhcCccc-cceEEecCCcHHHHHHHHHHHhhc--ccccEEEEecCcc
Confidence 99999986543 2233221111 256777666666555555554322 2234667776543
No 409
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=29.95 E-value=2.9e+02 Score=22.13 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcC---------------ceEEEEcCCchhhHHHH
Q 046637 64 GDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSE---------------AKIIFVDYQLLPIAQGA 128 (301)
Q Consensus 64 g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~---------------~~~vi~~~~~~~~~~~~ 128 (301)
|..|+|++.-+... -=.--++..|+.+..+.|.. .+++.++++..+ +.++|+..+..+.-..+
T Consensus 12 ~k~VlvvGgG~va~-rKa~~ll~~ga~v~Vvs~~~-~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln~~i 89 (210)
T COG1648 12 GKKVLVVGGGSVAL-RKARLLLKAGADVTVVSPEF-EPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELNERI 89 (210)
T ss_pred CCEEEEECCCHHHH-HHHHHHHhcCCEEEEEcCCc-cHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHHHHHH
Confidence 34455555533322 23333455666666666666 555666555555 66666665554444444
Q ss_pred HHHhc
Q 046637 129 FEILS 133 (301)
Q Consensus 129 ~~~~~ 133 (301)
.....
T Consensus 90 ~~~a~ 94 (210)
T COG1648 90 AKAAR 94 (210)
T ss_pred HHHHH
Confidence 44333
No 410
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=29.94 E-value=4.9e+02 Score=24.70 Aligned_cols=99 Identities=9% Similarity=-0.025 Sum_probs=58.4
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH----HHHHHHhhhccc--eeeecCC------CCCHHHHHHHH
Q 046637 40 YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAM----YELHFGVPMAGA--VLCTLNT------RHDSAMVSVLL 107 (301)
Q Consensus 40 ~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~----~~~~lA~~~~G~--~~v~l~~------~~~~~~l~~~l 107 (301)
....++.+.+++++..+ ..+++|.|++.-+.+- .++..++-+.|+ +...++. +.+.+.+..+.
T Consensus 50 ~~l~~m~~a~~ri~~ai-----~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~ 124 (575)
T PRK11070 50 QQLSGIEKAVELLYNAL-----REGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAH 124 (575)
T ss_pred HHhhCHHHHHHHHHHHH-----HCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHH
Confidence 44566667777776655 4567999999988764 344566677786 3233432 56777777766
Q ss_pred HhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEccCC
Q 046637 108 RHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLVPEC 148 (301)
Q Consensus 108 ~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 148 (301)
+ .+++++|+-+.-.....++..... .--.+|+.|.+
T Consensus 125 ~-~~~~LiItvD~Gi~~~e~i~~a~~----~gidvIVtDHH 160 (575)
T PRK11070 125 A-RGAQLIVTVDNGISSHAGVAHAHA----LGIPVLVTDHH 160 (575)
T ss_pred h-cCCCEEEEEcCCcCCHHHHHHHHH----CCCCEEEECCC
Confidence 5 477888776544333333221111 12445666665
No 411
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=29.91 E-value=1.3e+02 Score=28.64 Aligned_cols=43 Identities=16% Similarity=0.051 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceee
Q 046637 50 VKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLC 92 (301)
Q Consensus 50 ~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (301)
+.+...|.+.|+.+++.|.+++..+.....+++++..+|..-+
T Consensus 209 ~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V 251 (610)
T PRK09629 209 QDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRV 251 (610)
T ss_pred HHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCc
Confidence 4577778889999999999999999988888999999997533
No 412
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=29.65 E-value=3.9e+02 Score=23.50 Aligned_cols=19 Identities=11% Similarity=0.001 Sum_probs=11.3
Q ss_pred CCCCeeeechHHHHHHHHH
Q 046637 196 SSPKGVICSHRGAYLNSLA 214 (301)
Q Consensus 196 G~pK~v~~s~~~l~~~~~~ 214 (301)
|.--|.+.....++.....
T Consensus 243 GlRvG~~v~~~~~~~~~~~ 261 (391)
T PRK07309 243 GWRIGLIFAPAEFTAQLIK 261 (391)
T ss_pred cceeEEEEeCHHHHHHHHH
Confidence 4334667777777655543
No 413
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=29.65 E-value=1.7e+02 Score=19.45 Aligned_cols=66 Identities=15% Similarity=0.049 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEE-cCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceE
Q 046637 46 HQRCVKLASGLAHLGISPGDVVAAL-APNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKI 114 (301)
Q Consensus 46 ~~~~~~la~~L~~~gv~~g~~V~i~-~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (301)
++-+..++..+...+ .-+.|.+. +.+-++.+.+.--+.+.|+..++.+ +.-++.....|+..+.+-
T Consensus 9 yeTs~~va~~~~~~~--~~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~~l~~~~~~~l~~~~~~~ 75 (92)
T PF04122_consen 9 YETSAKVAKKFYPDN--KSDKVYIASGDNFADALSASPLAAKNNAPILLVN-NSLPSSVKAFLKSLNIKK 75 (92)
T ss_pred HHHHHHHHHHhcccC--CCCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-CCCCHHHHHHHHHcCCCE
Confidence 344555555554432 33455554 4443444433333334577777777 555577777777765543
No 414
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=29.61 E-value=4.2e+02 Score=23.86 Aligned_cols=68 Identities=15% Similarity=0.025 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHH-HHHHHHHhcCceEEEEcCCchhhHHHHHH
Q 046637 63 PGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSA-MVSVLLRHSEAKIIFVDYQLLPIAQGAFE 130 (301)
Q Consensus 63 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~-~l~~~l~~~~~~~vi~~~~~~~~~~~~~~ 130 (301)
.|.+|+|.+.....+-++-+-.-.+|..++.+......+ .....++.......+.++.....+.+...
T Consensus 289 ~Gkrvai~g~~~~~~~la~~L~eelGm~~v~v~t~~~~~~~~~~~~~~l~~~~~v~~~~D~~~l~~~i~ 357 (427)
T PRK02842 289 RGKRVFFLPDSQLEIPLARFLSRECGMELVEVGTPYLNRRFLAAELALLPDGVRIVEGQDVERQLDRIR 357 (427)
T ss_pred CCcEEEEECCchhHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHhccCCCEEEECCCHHHHHHHHH
Confidence 578999998776555555553333899888887655533 33555555555656666555544444433
No 415
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=29.59 E-value=2.8e+02 Score=21.88 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=37.8
Q ss_pred CEEEEeccc-hhhhhhHHH-HHHHHhCCeEEee-CCCCHHHHHHHHHhcCcceecCCh
Q 046637 225 PTYLWCVPM-FHCNGWCLT-WAVAAQGGTNVCQ-RTVNAKEIFDNITRHKVTHFGGAP 279 (301)
Q Consensus 225 ~~~l~~~p~-~h~~g~~~~-~~~l~~g~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P 279 (301)
.+++.+.|= .|..|...+ ...-..|-.++.. .+..++++.+.+++++|+.+.++-
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~ 143 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSA 143 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 444444442 888886643 3333457777755 466789999999999999986653
No 416
>PRK05942 aspartate aminotransferase; Provisional
Probab=29.54 E-value=3.9e+02 Score=23.49 Aligned_cols=24 Identities=8% Similarity=0.025 Sum_probs=14.9
Q ss_pred CCCCCCCeeeechHHHHHHHHHHH
Q 046637 193 GTTSSPKGVICSHRGAYLNSLAAA 216 (301)
Q Consensus 193 GtTG~pK~v~~s~~~l~~~~~~~~ 216 (301)
|..|.--|.++..+.++..+....
T Consensus 246 ~~~GlRiG~i~~~~~l~~~l~~~~ 269 (394)
T PRK05942 246 NMAGWRVGFVVGNRHIIQGLRTLK 269 (394)
T ss_pred CChhhheeeeecCHHHHHHHHHHH
Confidence 344544577888777776655443
No 417
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=29.48 E-value=1.7e+02 Score=23.71 Aligned_cols=54 Identities=13% Similarity=0.053 Sum_probs=38.0
Q ss_pred hcCCCCCCEEEEEcCCCHH--HHHH--HHHhhhccceeeecCCCCCHHHHHHHHHhcC
Q 046637 58 HLGISPGDVVAALAPNVPA--MYEL--HFGVPMAGAVLCTLNTRHDSAMVSVLLRHSE 111 (301)
Q Consensus 58 ~~gv~~g~~V~i~~~n~~~--~~~~--~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 111 (301)
.-|+.+|..+.|.++++.- .+.. ++..++.|-.++.+....+++++.+.+...+
T Consensus 15 ~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 15 HGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFG 72 (237)
T ss_pred cCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhC
Confidence 3499999999999999762 2222 2333466877777777888888877776544
No 418
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=29.46 E-value=58 Score=26.15 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=20.7
Q ss_pred CCCCCCEEEEEcCCCHHHHHHHHHhhhcc
Q 046637 60 GISPGDVVAALAPNVPAMYELHFGVPMAG 88 (301)
Q Consensus 60 gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 88 (301)
..++||.++|+-+|..+.+-.++..+...
T Consensus 41 ~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~ 69 (219)
T PF00667_consen 41 SYQPGDHLGVYPPNDPEEVERLLKRLGLD 69 (219)
T ss_dssp ---TT-EEEEE-SSEHHHHHHHHHHHTSG
T ss_pred cccCCCEEEEEccCCHHHHHHHHHHhCCC
Confidence 45899999999999999888888776554
No 419
>PRK02991 D-serine dehydratase; Provisional
Probab=29.07 E-value=3.3e+02 Score=24.76 Aligned_cols=56 Identities=7% Similarity=-0.072 Sum_probs=40.1
Q ss_pred EEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhh
Q 046637 69 ALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPI 124 (301)
Q Consensus 69 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (301)
+....+=.-....++|...|..+..+=|...++.....++..++++++++....+.
T Consensus 161 V~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~~~~~a 216 (441)
T PRK02991 161 AVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEGDYGVA 216 (441)
T ss_pred EEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHH
Confidence 33444445566677888889866666566677777888999999999998765443
No 420
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=29.01 E-value=3e+02 Score=22.03 Aligned_cols=100 Identities=9% Similarity=-0.034 Sum_probs=64.0
Q ss_pred CCeeeeHHHHHHHHHHHHHHH-------HhcC-C-CCCCEEEEEcCCCH----HHHHHHHHhhhccceeeecCCCCCHHH
Q 046637 36 GDVQYTWKETHQRCVKLASGL-------AHLG-I-SPGDVVAALAPNVP----AMYELHFGVPMAGAVLCTLNTRHDSAM 102 (301)
Q Consensus 36 ~~~~~Ty~el~~~~~~la~~L-------~~~g-v-~~g~~V~i~~~n~~----~~~~~~lA~~~~G~~~v~l~~~~~~~~ 102 (301)
..+.++-.|..-.++.+...+ .... - ....+|.+....+- ...+.-...-..|.-++-+-.+.+.++
T Consensus 51 ~~gei~vaqe~~as~~~~~~l~~l~~~l~~~~~~~~~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~ 130 (213)
T cd02069 51 GAGKMFLPQVLKSARVMKAAVAYLEPYMEKEKGENSSKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEK 130 (213)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHH
Confidence 446777777766555554433 2222 1 12335656555432 234555556678999999999999999
Q ss_pred HHHHHHhcCceEEEEcCC---chhhHHHHHHHhccc
Q 046637 103 VSVLLRHSEAKIIFVDYQ---LLPIAQGAFEILSKT 135 (301)
Q Consensus 103 l~~~l~~~~~~~vi~~~~---~~~~~~~~~~~~~~~ 135 (301)
+...+.+.+|++|..+.. ......+..+.+.+.
T Consensus 131 ~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~ 166 (213)
T cd02069 131 ILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRR 166 (213)
T ss_pred HHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhc
Confidence 999999999999988743 334445555555433
No 421
>PRK09028 cystathionine beta-lyase; Provisional
Probab=28.99 E-value=4.2e+02 Score=23.64 Aligned_cols=9 Identities=11% Similarity=0.180 Sum_probs=4.0
Q ss_pred CeeeechHH
Q 046637 199 KGVICSHRG 207 (301)
Q Consensus 199 K~v~~s~~~ 207 (301)
-|+....+.
T Consensus 217 ~G~~~~~~~ 225 (394)
T PRK09028 217 LGTATANEK 225 (394)
T ss_pred EEEEECCHH
Confidence 444444443
No 422
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=28.96 E-value=1e+02 Score=21.43 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=32.6
Q ss_pred HHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc-eeeecCCCCCHHHHHHHHHhcCceEEEE
Q 046637 56 LAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA-VLCTLNTRHDSAMVSVLLRHSEAKIIFV 117 (301)
Q Consensus 56 L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 117 (301)
|++.|+..-+.|.+..++....+.+.+.+-..+. ..+. .....++....++..+++.++.
T Consensus 55 l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii--~~~~~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 55 LERAGIEKADAVVILTDDDEENLLIALLARELNPDIRII--ARVNDPENAELLRQAGADHVIS 115 (116)
T ss_dssp HHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEE--EEESSHHHHHHHHHTT-SEEEE
T ss_pred HhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEE--EEECCHHHHHHHHHCCcCEEEC
Confidence 5666777777777777776665555555544332 2221 1223344455666677766653
No 423
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=28.87 E-value=2.2e+02 Score=27.67 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=41.9
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCC---------C-----HHHHHHHHHhc-Cce----EEEEcCCc
Q 046637 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH---------D-----SAMVSVLLRHS-EAK----IIFVDYQL 121 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~---------~-----~~~l~~~l~~~-~~~----~vi~~~~~ 121 (301)
+++||.|. +-+|+=..+.- |+...|+.++.+.|.. + .+.++..++.. +++ ++++....
T Consensus 232 ~~~Gd~VL-vdRN~HKSv~h--aLilsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY 308 (714)
T PRK15400 232 APAGSTVL-IDRNCHKSLTH--LMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY 308 (714)
T ss_pred cCCCCEEE-eecccHHHHHH--HHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC
Confidence 67898665 66777666544 9999999999998764 3 67788888654 233 67766554
Q ss_pred hh
Q 046637 122 LP 123 (301)
Q Consensus 122 ~~ 123 (301)
..
T Consensus 309 dG 310 (714)
T PRK15400 309 DG 310 (714)
T ss_pred cc
Confidence 43
No 424
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=28.87 E-value=4.2e+02 Score=23.59 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecC--C---C--CCHHHHHHHHHhcCceEEEEcC
Q 046637 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLN--T---R--HDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~--~---~--~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
+.+||.|++..|.=+.+. -....+|+.+++++ + + ...+++...+.. +.++++...
T Consensus 110 ~~pGDeVlip~P~Y~~y~---~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~ln~ 171 (393)
T COG0436 110 LNPGDEVLIPDPGYPSYE---AAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP-KTKAIILNS 171 (393)
T ss_pred cCCCCEEEEeCCCCcCHH---HHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc-cceEEEEeC
Confidence 567777777666533332 22234455544433 2 2 245777777776 777776643
No 425
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=28.74 E-value=4.1e+02 Score=23.49 Aligned_cols=109 Identities=13% Similarity=0.038 Sum_probs=63.3
Q ss_pred CCCCCHHHHHHHHhhhcCCccEEEE-C--------CeeeeHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEcCCCH--HH
Q 046637 11 YVPLTPISFLERSAVVYRDRPSVVY-G--------DVQYTWKETHQRCVKLASGLAHLGISP--GDVVAALAPNVP--AM 77 (301)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~al~~-~--------~~~~Ty~el~~~~~~la~~L~~~gv~~--g~~V~i~~~n~~--~~ 77 (301)
.....+.+.++--.+.+-+..+++. - +-.+|++.+...+..++..+ |+.+ .+++....|-.- .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~dr~l~~~Pl~h~~g~ 153 (386)
T TIGR02372 77 LVRRRIGEWVDLIAHHSTPTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL---GERPPPVRRVISCVPAHHLYGF 153 (386)
T ss_pred hhhccHHHHHHHHHhcCCCCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh---CcCCCCCCeEEEeCCcHHHHHH
Confidence 3455666666655555444455544 2 24789999998888776654 4433 456776666542 23
Q ss_pred HHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhH
Q 046637 78 YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIA 125 (301)
Q Consensus 78 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (301)
...++..+..|+.++... ..++..+...++.. .+++........+
T Consensus 154 ~~~~l~~l~~G~~vv~~~-~~~~~~~l~~i~~~--t~~~~~P~~l~~l 198 (386)
T TIGR02372 154 LFSCLLPSRRGLEAKQLA-AAPASGIMRHARPG--DLIVGTPFIWEQL 198 (386)
T ss_pred HHHHHHHHHCCCeEEecC-CCChHHHHHhhccC--CEEEECcHHHHHH
Confidence 344566667888777664 45555555555432 4555555444443
No 426
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=28.45 E-value=4.3e+02 Score=23.62 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEEcCCC-HHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 47 QRCVKLASGLAHLGISPGDVVAALAPNV-PAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 47 ~~~~~la~~L~~~gv~~g~~V~i~~~n~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
..+-.+++.|.++|.. .|.+..+.. .++..-.+..+..+. .+-......++...++..+|+++|...
T Consensus 284 ~~~~~l~~~L~elGm~---~v~~~t~~~~~~~~~~~~~~l~~~~---~v~~~~d~~~l~~~i~~~~pDllig~~ 351 (407)
T TIGR01279 284 LLELPLARFLKRCGME---VVECGTPYIHRRFHAAELALLEGGV---RIVEQPDFHRQLQRIRATRPDLVVTGL 351 (407)
T ss_pred hHHHHHHHHHHHCCCE---EEEecCCCCChHHHHHHHhhcCCCC---eEEeCCCHHHHHHHHHhcCCCEEecCc
Confidence 3455666667776665 344444442 334444444443332 223445666777777777777777765
No 427
>PRK07048 serine/threonine dehydratase; Validated
Probab=28.21 E-value=3.8e+02 Score=22.92 Aligned_cols=51 Identities=8% Similarity=0.015 Sum_probs=38.8
Q ss_pred cCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCc
Q 046637 71 APNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQL 121 (301)
Q Consensus 71 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 121 (301)
...+-.-....++|...|..++.+-|...+++....++..++++++++...
T Consensus 78 aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~~~ 128 (321)
T PRK07048 78 FSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRYT 128 (321)
T ss_pred eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCH
Confidence 334556667777888999876666666666788899999999999998653
No 428
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=28.14 E-value=4.9e+02 Score=24.14 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=54.1
Q ss_pred hhcCCccEEEECCee--eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHH
Q 046637 25 VVYRDRPSVVYGDVQ--YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAM 102 (301)
Q Consensus 25 ~~~~~~~al~~~~~~--~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 102 (301)
+..+.++++..++.. -||+. .-....++. |......+| .|. ...+=......++|...|..++.+-|...+..
T Consensus 28 ~~~g~~i~lK~E~lqptgSfK~-RgA~n~i~~-l~~~~~~~g-VV~--aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~ 102 (499)
T TIGR01124 28 ERLGNRILIKREDLQPVFSFKL-RGAYNKMAQ-LSPEQKARG-VIA--ASAGNHAQGVAFSAARLGLKALIVMPETTPDI 102 (499)
T ss_pred HHhCCEEEEEecCCCCCCCCHH-HHHHHHHHH-hhHHhcCCE-EEE--ECCCHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 334457777777643 34544 111222222 222111222 233 33344455566778889987776667777777
Q ss_pred HHHHHHhcCceEEEEcCCch
Q 046637 103 VSVLLRHSEAKIIFVDYQLL 122 (301)
Q Consensus 103 l~~~l~~~~~~~vi~~~~~~ 122 (301)
-...++..++++++......
T Consensus 103 Kv~~~r~~GA~Vvl~g~~~d 122 (499)
T TIGR01124 103 KVDAVRGFGGEVVLHGANFD 122 (499)
T ss_pred HHHHHHhCCCEEEEeCcCHH
Confidence 77899999999999976543
No 429
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=28.12 E-value=4.3e+02 Score=23.43 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=6.9
Q ss_pred HHHHhcCceEEEEcC
Q 046637 105 VLLRHSEAKIIFVDY 119 (301)
Q Consensus 105 ~~l~~~~~~~vi~~~ 119 (301)
..+...+.++.+++.
T Consensus 119 ~~~~~~G~~v~~vd~ 133 (390)
T PRK08133 119 KIFARFGIETTFVDL 133 (390)
T ss_pred HHHHHcCcEEEEECC
Confidence 344444555554443
No 430
>TIGR00623 sula cell division inhibitor SulA. All proteins in this family for which the functions are known are cell division inhibitors. In E. coli, SulA is one of the SOS regulated genes.
Probab=28.03 E-value=2.4e+02 Score=21.71 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=43.5
Q ss_pred eeeHHHHHHHHH--HHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHhhhccceee-ecCCCCCHHHHHHHHHhcCce
Q 046637 39 QYTWKETHQRCV--KLASGLAHLGISPGDVVAALAPNVPAM--YELHFGVPMAGAVLC-TLNTRHDSAMVSVLLRHSEAK 113 (301)
Q Consensus 39 ~~Ty~el~~~~~--~la~~L~~~gv~~g~~V~i~~~n~~~~--~~~~lA~~~~G~~~v-~l~~~~~~~~l~~~l~~~~~~ 113 (301)
++.|.+-.-... -+.-.|.+++ ..+..++++.|...-. .....|+-.-....+ +..|....+..+..|+.-.|.
T Consensus 34 El~~~~~~pg~~elLLlP~L~~Ls-~~~Rwlv~IaPP~~~~~~~L~~~Gl~l~rvlli~~~~~~d~lwa~EQaLrSG~c~ 112 (168)
T TIGR00623 34 EVVYREDQPMMAQLLLLPLLQQLG-QQSRWQLWLTPQQKLSKEWVQSSGLPLTKVMQISQLSPCNTVESMIRALRTGNYS 112 (168)
T ss_pred EEeecCCCchhHHHHHHHHHHHhc-ccCceEEEECCCCccCHHHHHHcCCChhHEEEEecCCchhHHHHHHHHHHhCCCc
Confidence 566655322222 3555666665 3566788888885522 222333322222122 223344456678888888999
Q ss_pred EEEEc
Q 046637 114 IIFVD 118 (301)
Q Consensus 114 ~vi~~ 118 (301)
+|++=
T Consensus 113 aVL~W 117 (168)
T TIGR00623 113 VVIGW 117 (168)
T ss_pred EEEec
Confidence 99883
No 431
>PRK10083 putative oxidoreductase; Provisional
Probab=28.01 E-value=3.4e+02 Score=23.06 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=35.8
Q ss_pred hcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce-eeecCCCCCHHHHHHHHHhcCceEEEEcC
Q 046637 58 HLGISPGDVVAALAPNVPAMYELHFGVPMAGAV-LCTLNTRHDSAMVSVLLRHSEAKIIFVDY 119 (301)
Q Consensus 58 ~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~-~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (301)
..++++|++|+|.+....-..++.+|-...|+. ++..+. + ++-..++...+++.++...
T Consensus 155 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~--~-~~~~~~~~~~Ga~~~i~~~ 214 (339)
T PRK10083 155 RTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADR--I-DERLALAKESGADWVINNA 214 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcC--C-HHHHHHHHHhCCcEEecCc
Confidence 347899999999996555555555554445874 444433 2 3334555667777666543
No 432
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=27.92 E-value=2e+02 Score=21.92 Aligned_cols=43 Identities=9% Similarity=0.029 Sum_probs=27.4
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEcCCCHHHHHHHHH
Q 046637 40 YTWKETHQRCVKLASGLAHLGIS-PGDVVAALAPNVPAMYELHFG 83 (301)
Q Consensus 40 ~Ty~el~~~~~~la~~L~~~gv~-~g~~V~i~~~n~~~~~~~~lA 83 (301)
+||.|+.+.+.++|..+.+. .+ ....|.-+...+..+...+.-
T Consensus 3 is~~~i~~~i~~lA~~I~~~-~~~~~~vvv~i~~GG~~~a~~l~~ 46 (166)
T TIGR01203 3 IPEEQIKARIAELAKQITED-YAGKPLVLLCVLKGSFPFFADLIR 46 (166)
T ss_pred cCHHHHHHHHHHHHHHHHHH-cCCCCeEEEEEccCCHHHHHHHHH
Confidence 79999999999999999875 21 222333344445555444333
No 433
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=27.71 E-value=4.6e+02 Score=23.68 Aligned_cols=30 Identities=13% Similarity=-0.071 Sum_probs=18.4
Q ss_pred CCCEEEEEcCCCHHHHHHHHHhhhccceeee
Q 046637 63 PGDVVAALAPNVPAMYELHFGVPMAGAVLCT 93 (301)
Q Consensus 63 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (301)
.|.+|+|.+..+..+-++-+-. .+|..++.
T Consensus 302 ~gkrv~i~g~~~~~~~la~~L~-elGm~v~~ 331 (435)
T cd01974 302 HGKKFALYGDPDFLIGLTSFLL-ELGMEPVH 331 (435)
T ss_pred CCCEEEEEcChHHHHHHHHHHH-HCCCEEEE
Confidence 4778888887655444433333 67876644
No 434
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=27.68 E-value=2.5e+02 Score=24.29 Aligned_cols=54 Identities=17% Similarity=0.323 Sum_probs=27.4
Q ss_pred CCCCEEEEEcCCCHHHHHHHHHhhhccceeeec--CC--CCCHHHHHHHHHhcCceEEEEc
Q 046637 62 SPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL--NT--RHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 62 ~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l--~~--~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
++||.|++-.|.-.. ...++...|+.++++ ++ ..+.+.+...+...++++++..
T Consensus 103 ~~gd~vlv~~P~y~~---~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~ 160 (356)
T PRK04870 103 KPGATVLAPEPGFVM---YRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLA 160 (356)
T ss_pred CCCCEEEECCCCHHH---HHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEc
Confidence 566666666554332 223344556544443 32 2345666666655555655543
No 435
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=27.67 E-value=79 Score=20.03 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcC
Q 046637 50 VKLASGLAHLGISPGDVVAALAP 72 (301)
Q Consensus 50 ~~la~~L~~~gv~~g~~V~i~~~ 72 (301)
..+...|.++|+.+|..|-+.-.
T Consensus 22 ~~~~~~L~~lGl~~G~~i~v~~~ 44 (74)
T PF04023_consen 22 PELLRRLADLGLTPGSEITVIRK 44 (74)
T ss_dssp HHHHHHHHHCT-STTEEEEEEEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEe
Confidence 45677899999999999888753
No 436
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=27.58 E-value=3.3e+02 Score=22.65 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=38.5
Q ss_pred CCEEEEEcCCCHHHHHHHHHhhhccce---eeecCCCCCHHHHHHHHHhcCceEEEEcCC
Q 046637 64 GDVVAALAPNVPAMYELHFGVPMAGAV---LCTLNTRHDSAMVSVLLRHSEAKIIFVDYQ 120 (301)
Q Consensus 64 g~~V~i~~~n~~~~~~~~lA~~~~G~~---~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (301)
+.++.+-.-...+.+. .|..+|.. .+.+.+.++.+.=..++++++++++++-+.
T Consensus 150 ~~~~~~RvLP~~~~l~---~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~S 206 (256)
T TIGR00715 150 EAVVFVRVLPYPQALA---QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKAS 206 (256)
T ss_pred CceEEEEECCCchhhH---HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCC
Confidence 4444443333444443 66677764 788888899888899999999999999644
No 437
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=27.52 E-value=4.3e+02 Score=23.83 Aligned_cols=66 Identities=15% Similarity=0.012 Sum_probs=34.7
Q ss_pred CCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHH----HHHHHHHhcCceEEEEcCCchhhHHHHH
Q 046637 63 PGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSA----MVSVLLRHSEAKIIFVDYQLLPIAQGAF 129 (301)
Q Consensus 63 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~----~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 129 (301)
.|.+|+|.++.+..+-++-+-. ..|..++.+......+ .+...+.....+.++++......+.+..
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~L~-elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~l 368 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRFVL-ENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFFDIESYA 368 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHHHH-HCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHH
Confidence 4778888887544433333333 6787665554443333 3334455555566666554444444443
No 438
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=27.50 E-value=4.6e+02 Score=23.61 Aligned_cols=77 Identities=12% Similarity=-0.072 Sum_probs=52.4
Q ss_pred eechHHHHHHHHHHHHHh---hC-CCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC-CCCHHHHHHHHHhcCcceec
Q 046637 202 ICSHRGAYLNSLAAALFN---EM-GLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR-TVNAKEIFDNITRHKVTHFG 276 (301)
Q Consensus 202 ~~s~~~l~~~~~~~~~~~---~~-~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 276 (301)
-+....|...+......+ +. ..++++....+-. ...+...++++..|+.++... ......+...+++.+++.+.
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~-~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i 97 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDP-LQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIW 97 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCC-HHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEE
Confidence 345566766666555544 33 4577777766533 223334678888999998875 56788899999999999887
Q ss_pred CCh
Q 046637 277 GAP 279 (301)
Q Consensus 277 ~~P 279 (301)
...
T Consensus 98 ~~~ 100 (452)
T PRK07445 98 GLD 100 (452)
T ss_pred ecC
Confidence 643
No 439
>PRK08246 threonine dehydratase; Provisional
Probab=27.46 E-value=3.9e+02 Score=22.79 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=40.8
Q ss_pred CCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch
Q 046637 63 PGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL 122 (301)
Q Consensus 63 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (301)
+++.|... ..+=.-....++|...|.-+..+-|...++.....++..++++++++....
T Consensus 67 ~~~~vv~a-SsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~ 125 (310)
T PRK08246 67 PAAGVVAA-SGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAEYA 125 (310)
T ss_pred cCCeEEEe-CCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCCCHH
Confidence 45555443 334555566677778887666555665667778899999999999987544
No 440
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=27.18 E-value=72 Score=19.52 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=16.5
Q ss_pred HHHHHhcCCCCCCEEEEEcCC
Q 046637 53 ASGLAHLGISPGDVVAALAPN 73 (301)
Q Consensus 53 a~~L~~~gv~~g~~V~i~~~n 73 (301)
..+|.+.|+..|+.|-|-..+
T Consensus 30 G~WL~~aGF~~G~~v~V~v~~ 50 (57)
T PF08845_consen 30 GKWLEEAGFTIGDPVKVRVMP 50 (57)
T ss_pred hhhhHHhCCCCCCEEEEEEEC
Confidence 457899999999998875443
No 441
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=27.07 E-value=2e+02 Score=19.18 Aligned_cols=49 Identities=8% Similarity=-0.122 Sum_probs=31.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccce
Q 046637 39 QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 39 ~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (301)
.+.|.++......+.. +.. ..+++.|.+++.++.....+...+...|..
T Consensus 34 ~ip~~~~~~~~~~~~~-~~~--~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~ 82 (96)
T cd01529 34 SIPGAALVLRSQELQA-LEA--PGRATRYVLTCDGSLLARFAAQELLALGGK 82 (96)
T ss_pred eCCHHHhcCCHHHHHH-hhc--CCCCCCEEEEeCChHHHHHHHHHHHHcCCC
Confidence 5667776544444432 222 356778999988877776666666777863
No 442
>PRK07334 threonine dehydratase; Provisional
Probab=27.01 E-value=4.6e+02 Score=23.41 Aligned_cols=51 Identities=10% Similarity=0.009 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch
Q 046637 72 PNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL 122 (301)
Q Consensus 72 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (301)
..+-.-..+.++|...|..+..+-|...++.-...++..++++++++....
T Consensus 78 SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~ 128 (403)
T PRK07334 78 SAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGETLD 128 (403)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECcCHH
Confidence 344455666778888998666665655556667889999999999975433
No 443
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=26.89 E-value=4.3e+02 Score=23.14 Aligned_cols=56 Identities=16% Similarity=-0.011 Sum_probs=36.1
Q ss_pred cCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEE
Q 046637 59 LGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFV 117 (301)
Q Consensus 59 ~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 117 (301)
.++++|++|+|.+..+.--..+...+...|+.++.+. .+.+.. ..++..+++.++-
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~--~s~~~~-~~~~~~G~~~~i~ 244 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV--SSEEKA-EYCRALGAEGVIN 244 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe--CCHHHH-HHHHHcCCCEEEc
Confidence 3688999999999866555555555567787655553 244444 4445677766654
No 444
>PRK07671 cystathionine beta-lyase; Provisional
Probab=26.77 E-value=4.2e+02 Score=23.35 Aligned_cols=9 Identities=44% Similarity=0.446 Sum_probs=4.2
Q ss_pred CCCCEEEEE
Q 046637 62 SPGDVVAAL 70 (301)
Q Consensus 62 ~~g~~V~i~ 70 (301)
++||+|.+.
T Consensus 86 ~~Gd~Viv~ 94 (377)
T PRK07671 86 SSGDHVILT 94 (377)
T ss_pred CCCCEEEEC
Confidence 445554443
No 445
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=26.75 E-value=61 Score=18.75 Aligned_cols=19 Identities=21% Similarity=0.294 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHhhhccce
Q 046637 72 PNVPAMYELHFGVPMAGAV 90 (301)
Q Consensus 72 ~n~~~~~~~~lA~~~~G~~ 90 (301)
|--++++.+++.|.+.|+.
T Consensus 11 P~Y~~Ll~Ayi~C~KVGAP 29 (45)
T PF03790_consen 11 PLYPRLLAAYIDCQKVGAP 29 (45)
T ss_pred CCcHHHHHHHHHHHhcCCC
Confidence 4457899999999999963
No 446
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=26.52 E-value=4.8e+02 Score=23.53 Aligned_cols=88 Identities=14% Similarity=-0.000 Sum_probs=52.4
Q ss_pred ccEEEECCe--eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCC---HHHHH
Q 046637 30 RPSVVYGDV--QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHD---SAMVS 104 (301)
Q Consensus 30 ~~al~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~---~~~l~ 104 (301)
++++..++. +=|++ .+.+...+....+.|.. ++.+....+=.-..+.++|...|.-+..+-|..+ ...-.
T Consensus 86 ~Iy~K~E~~nPtGS~K--~R~A~~~~~~a~~~G~~---~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~ 160 (419)
T TIGR01415 86 RIYYKYESVSPTGSHK--INTAIAQAYYAKIEGAK---RLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRK 160 (419)
T ss_pred eEEEEECCCCCCCCcH--HHHHHHHHHHHHHcCCC---eEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHH
Confidence 566666553 22444 23344445555666744 4544433344566677788888875544333322 23556
Q ss_pred HHHHhcCceEEEEcCCch
Q 046637 105 VLLRHSEAKIIFVDYQLL 122 (301)
Q Consensus 105 ~~l~~~~~~~vi~~~~~~ 122 (301)
.+++..+++++.+++...
T Consensus 161 ~~m~~~GA~Vi~~~~~~~ 178 (419)
T TIGR01415 161 YLMELYGAEVIPSPSEFT 178 (419)
T ss_pred HHHHHcCCEEEEECCchh
Confidence 899999999999987643
No 447
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=26.49 E-value=4.1e+02 Score=22.68 Aligned_cols=71 Identities=10% Similarity=0.031 Sum_probs=47.7
Q ss_pred eHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH----------------------------HHHHHHHhhhccceee
Q 046637 41 TWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA----------------------------MYELHFGVPMAGAVLC 92 (301)
Q Consensus 41 Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~----------------------------~~~~~lA~~~~G~~~v 92 (301)
.+.++.+..+.+...+++.|+. ..|.|...+... ..+-.+|+++.|+.++
T Consensus 127 ~~~~~e~~~~DI~~f~~~~~~d--~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~~~aS~~YA~AAl~~g~~fv 204 (295)
T PF07994_consen 127 KREQVEQIREDIRDFKKENGLD--RVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPEISASMLYAYAALEAGVPFV 204 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-S--CEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TTHHHHHHHHHHHHHTTEEEE
T ss_pred hHHHHHHHHHHHHHHHHHhCCC--cEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCcCChHHHHHHHHHHCCCCeE
Confidence 4555556667788888888765 455555544322 3455678889999999
Q ss_pred ecCCCCCH--HHHHHHHHhcCce
Q 046637 93 TLNTRHDS--AMVSVLLRHSEAK 113 (301)
Q Consensus 93 ~l~~~~~~--~~l~~~l~~~~~~ 113 (301)
-..|.... +.+.++.++.+.-
T Consensus 205 N~tP~~~a~~P~l~ela~~~gvp 227 (295)
T PF07994_consen 205 NGTPSNIADDPALVELAEEKGVP 227 (295)
T ss_dssp E-SSSTTTTSHHHHHHHHHHTEE
T ss_pred eccCccccCCHHHHHHHHHcCCC
Confidence 88887655 8899999888764
No 448
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=26.47 E-value=2.3e+02 Score=19.78 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=45.7
Q ss_pred EEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCchhhHHHHHHHhccccCCCCceEEc
Q 046637 66 VVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLLPIAQGAFEILSKTSAKLPLLVLV 145 (301)
Q Consensus 66 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 145 (301)
++++++. .+.+ ++-..+|.-..++.......+..+.+.+-+..+++..+...+.+.+..+...+. ..|.++.+
T Consensus 5 kIaVIGD--~dtv---~GFrLaGi~~~~v~~~ee~~~~i~~l~~~d~gII~Ite~~a~~i~~~i~~~~~~--~~P~Il~I 77 (104)
T PRK01395 5 KIGVVGD--KDSI---LPFKALGIDVFPVIDEQEAINTLRKLAMEDYGIIYITEQIAADIPETIERYDNQ--VLPAIILI 77 (104)
T ss_pred eEEEEEC--HHHH---HHHHHcCCeeEEecChHHHHHHHHHHhcCCcEEEEEcHHHHHHhHHHHHHhcCC--CCCEEEEe
Confidence 5778876 4443 344455655555544433333333344567888888888887777766655422 56777777
Q ss_pred cCC
Q 046637 146 PEC 148 (301)
Q Consensus 146 ~~~ 148 (301)
.+.
T Consensus 78 P~~ 80 (104)
T PRK01395 78 PSN 80 (104)
T ss_pred CCC
Confidence 664
No 449
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.43 E-value=1.6e+02 Score=17.93 Aligned_cols=32 Identities=25% Similarity=0.202 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHH
Q 046637 48 RCVKLASGLAHLGISPGDVVAALAPNVPAMYEL 80 (301)
Q Consensus 48 ~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~ 80 (301)
+...+-..+++.|+ +...-|+..|++..|-+.
T Consensus 13 el~~~l~~~r~~~~-~~~~kAvlT~tN~~Wt~~ 44 (58)
T PF12646_consen 13 ELDKFLDALRKAGI-PIPLKAVLTPTNINWTLK 44 (58)
T ss_pred HHHHHHHHHHHcCC-CcceEEEECCCcccCcHH
Confidence 34445555666677 666777777777666543
No 450
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=26.33 E-value=2.5e+02 Score=20.11 Aligned_cols=39 Identities=8% Similarity=-0.052 Sum_probs=28.3
Q ss_pred cCCCCCCEEEEEcC-CCHHHHHHHHHhhhccceeeecCCC
Q 046637 59 LGISPGDVVAALAP-NVPAMYELHFGVPMAGAVLCTLNTR 97 (301)
Q Consensus 59 ~gv~~g~~V~i~~~-n~~~~~~~~lA~~~~G~~~v~l~~~ 97 (301)
.|+.+++.|.+++. .+.....+.+.+...|..+..|+-+
T Consensus 81 ~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG 120 (128)
T cd01520 81 ARLERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGG 120 (128)
T ss_pred hccCCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCc
Confidence 58999999999986 5666666667777788865555433
No 451
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=26.33 E-value=2.8e+02 Score=24.58 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCCCHHHHHHH--HHhhhccce--eeecCC---CCCHHHHHHHHHhcCceEEEEc
Q 046637 61 ISPGDVVAALAPNVPAMYELH--FGVPMAGAV--LCTLNT---RHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~~~~--lA~~~~G~~--~v~l~~---~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
+++||.|.+..+......... ......|+. .+++++ ....+++...++..++++++..
T Consensus 108 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~ 172 (416)
T PRK00011 108 LKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAG 172 (416)
T ss_pred cCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEEC
Confidence 568888887766543221111 111223343 344442 3567888888876567777764
No 452
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=26.21 E-value=1.9e+02 Score=20.79 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=18.3
Q ss_pred HHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHH
Q 046637 18 SFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVK 51 (301)
Q Consensus 18 ~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~ 51 (301)
+.+....+.+|+...++..++..+|+.+.+..+.
T Consensus 82 ~~L~~~~~~~~~~~v~i~aD~~~~~~~vv~vmd~ 115 (129)
T TIGR02801 82 AEIAAALAANPDTPVLIRADKTVPYGEVIKVMAL 115 (129)
T ss_pred HHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 3444444445555555556666666665554443
No 453
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=26.05 E-value=3.9e+02 Score=22.33 Aligned_cols=86 Identities=9% Similarity=0.052 Sum_probs=47.8
Q ss_pred eHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHH---HHHHHHHhcCceEE
Q 046637 41 TWKETHQRCVKLASGLAHL--GISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSA---MVSVLLRHSEAKII 115 (301)
Q Consensus 41 Ty~el~~~~~~la~~L~~~--gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~---~l~~~l~~~~~~~v 115 (301)
.++++..+...+-..+++. .+ ++ +..+...+...++.-.+++--.|..-.--...-++. ++...++..+.++|
T Consensus 147 N~~~~~~~L~~l~~~~~~~~~~~-~~-~~~v~~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~i 224 (282)
T cd01017 147 NAAAYAKKLEALDQEYRAKLAKA-KG-KTFVTQHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYI 224 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CC-CeEEEecccHHHHHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 3445555555555555543 22 33 445566667777776666655442211111223444 45566788889999
Q ss_pred EEcCCchhhHHHH
Q 046637 116 FVDYQLLPIAQGA 128 (301)
Q Consensus 116 i~~~~~~~~~~~~ 128 (301)
|++...-....+.
T Consensus 225 f~e~~~~~~~~~~ 237 (282)
T cd01017 225 FFEENASSKIAET 237 (282)
T ss_pred EEeCCCChHHHHH
Confidence 9998876544333
No 454
>PF07538 ChW: Clostridial hydrophobic W; InterPro: IPR006637 This hydrophobic repeat is found in a number of Chlostridium proteins. It contains a conserved tryptophan residue.
Probab=25.93 E-value=45 Score=18.10 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=8.6
Q ss_pred ccCCCCCCCee
Q 046637 191 TSGTTSSPKGV 201 (301)
Q Consensus 191 TSGtTG~pK~v 201 (301)
++||+|..|.+
T Consensus 16 ~aGt~G~~~rl 26 (36)
T PF07538_consen 16 TAGTTGQGLRL 26 (36)
T ss_pred ecccCCCCcEE
Confidence 57999988754
No 455
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=25.93 E-value=4.3e+02 Score=22.70 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=30.1
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHhhhccc--eeeecCC--CCCHHHHHHHHHhcCceEEEE
Q 046637 61 ISPGDVVAALAPNVPAMYELHFGVPMAGA--VLCTLNT--RHDSAMVSVLLRHSEAKIIFV 117 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~--~~v~l~~--~~~~~~l~~~l~~~~~~~vi~ 117 (301)
+++|+.|.+..+...... ..-++...|+ +.+++++ ....+++...++..++++++.
T Consensus 71 ~~~g~~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i 130 (356)
T cd06451 71 LEPGDKVLVGVNGVFGDR-WADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTL 130 (356)
T ss_pred CCCCCEEEEecCCchhHH-HHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEE
Confidence 357787777655444321 1123344554 4445543 245677777776546666555
No 456
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=25.90 E-value=4.4e+02 Score=22.83 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCCCC----------C-EEEEEcCCC-HHHH---HHHHHhhhccceeeecCCCCCHHHHHHHHHhcCc
Q 046637 48 RCVKLASGLAHLGISPG----------D-VVAALAPNV-PAMY---ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEA 112 (301)
Q Consensus 48 ~~~~la~~L~~~gv~~g----------~-~V~i~~~n~-~~~~---~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 112 (301)
.+..++..|++.|.+++ . ...++.+++ ++.+ ..++| .+.+ ++|.+.++ ..+....+++...+
T Consensus 53 ~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla-~~~~-~~V~V~~d-R~~~~~~~~~~~~~ 129 (326)
T PF02606_consen 53 LVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLA-RKLP-VPVIVGPD-RVAAARAALKEFPA 129 (326)
T ss_pred HHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHH-HhcC-CcEEEeCc-HHHHHHHHHHHCCC
Confidence 45678888888765531 0 133333332 2111 12222 2444 55555444 44566677777778
Q ss_pred eEEEEcCCchhh
Q 046637 113 KIIFVDYQLLPI 124 (301)
Q Consensus 113 ~~vi~~~~~~~~ 124 (301)
++||.|+.+...
T Consensus 130 dviilDDGfQh~ 141 (326)
T PF02606_consen 130 DVIILDDGFQHR 141 (326)
T ss_pred CEEEEcCCcccc
Confidence 889998887654
No 457
>PRK10537 voltage-gated potassium channel; Provisional
Probab=25.90 E-value=1.4e+02 Score=26.60 Aligned_cols=67 Identities=12% Similarity=0.034 Sum_probs=44.2
Q ss_pred HHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch
Q 046637 55 GLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL 122 (301)
Q Consensus 55 ~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (301)
.|++.|++.-+.|.+..+|+.+...+.+++...+-. +.+-.....++-.+.+++.+++.++......
T Consensus 294 ~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~-~kIIa~v~~~~~~~~L~~~GaD~VIsp~~l~ 360 (393)
T PRK10537 294 VLKKAGAARARAILALRDNDADNAFVVLAAKEMSSD-VKTVAAVNDSKNLEKIKRVHPDMIFSPQLLG 360 (393)
T ss_pred HHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCC-CcEEEEECCHHHHHHHHhcCCCEEECHHHHH
Confidence 467778888888888888888887777777776631 1111122234456677888888888775443
No 458
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=25.82 E-value=5.1e+02 Score=23.62 Aligned_cols=59 Identities=8% Similarity=-0.026 Sum_probs=37.9
Q ss_pred CCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCC-CHHHHHHHHHhcCceEEEEcCCc
Q 046637 63 PGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH-DSAMVSVLLRHSEAKIIFVDYQL 121 (301)
Q Consensus 63 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~-~~~~l~~~l~~~~~~~vi~~~~~ 121 (301)
.|.+|+|.......+..+-+..-.+|..++.+.... ..+++..+++......++.++..
T Consensus 324 ~GkrvaI~~~~~~~~~l~~~l~~ElGmevv~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 383 (457)
T TIGR01284 324 RGKKVWVWSGGPKLWHWPRPLEDELGMEVVAVSTKFGHEDDYEKIIARVREGTVIIDDPN 383 (457)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEEEEeCCHHHHHHHHHhcCCCeEEEeCCC
Confidence 378999998775554444444446898877765443 47777777777665545555433
No 459
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=25.72 E-value=4.2e+02 Score=22.73 Aligned_cols=58 Identities=14% Similarity=0.023 Sum_probs=34.9
Q ss_pred HHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc-eeeecCCCCCHHHHHHHHHhcCceEEEE
Q 046637 56 LAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA-VLCTLNTRHDSAMVSVLLRHSEAKIIFV 117 (301)
Q Consensus 56 L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 117 (301)
+.+.+..+|++|+|.+....-..++.+|- ..|+ .++.... +++.+ .++++.+++.++-
T Consensus 162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak-~~G~~~Vi~~~~--~~~~~-~~a~~lGa~~vi~ 220 (343)
T PRK09880 162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVK-TLGAAEIVCADV--SPRSL-SLAREMGADKLVN 220 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEEeC--CHHHH-HHHHHcCCcEEec
Confidence 45567788999999987444444444444 4576 3444432 33444 4566678877664
No 460
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=25.48 E-value=4.2e+02 Score=22.45 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=31.0
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCC---CCHHHHHHHHHhc------CceEEEEc
Q 046637 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTR---HDSAMVSVLLRHS------EAKIIFVD 118 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~---~~~~~l~~~l~~~------~~~~vi~~ 118 (301)
.++||.|.+..+...........+...|+.++.++.. .+.+.+...++.. ++++++..
T Consensus 68 ~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~ 134 (338)
T cd06502 68 TQPGGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGENGKLTPEDLEAAIRPRDDIHFPPPSLVSLE 134 (338)
T ss_pred cCCCCeEEEecCcceeeecCCcHHHHcCceEEeecCCCCcCCHHHHHHHhhccCCCcCCcceEEEEE
Confidence 3678887765444322111111122367666655543 5667788777642 56666654
No 461
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=25.47 E-value=3.4e+02 Score=21.39 Aligned_cols=99 Identities=10% Similarity=-0.012 Sum_probs=62.7
Q ss_pred CCeeeeHHHHHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCH----HHHHHHHHhhhccceeeecCCCCCHHHHH
Q 046637 36 GDVQYTWKETHQRCVKLASGLAHL-------GISPGDVVAALAPNVP----AMYELHFGVPMAGAVLCTLNTRHDSAMVS 104 (301)
Q Consensus 36 ~~~~~Ty~el~~~~~~la~~L~~~-------gv~~g~~V~i~~~n~~----~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 104 (301)
+...++..|..-.++.+...+..+ +-..+.+|.+....+- ...+....+-..|.-++.+-++.+.+++.
T Consensus 47 ~~~~i~va~e~~as~~~~~~l~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~ 126 (201)
T cd02070 47 EEGEIFVPELLMAADAMKAGLDLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFV 126 (201)
T ss_pred ccCCeeHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 446788888777666555543321 2212346665544432 23344444557888889899999999999
Q ss_pred HHHHhcCceEEEEcCC---chhhHHHHHHHhcc
Q 046637 105 VLLRHSEAKIIFVDYQ---LLPIAQGAFEILSK 134 (301)
Q Consensus 105 ~~l~~~~~~~vi~~~~---~~~~~~~~~~~~~~ 134 (301)
..+.+.+|++|..+.. ......+..+.+.+
T Consensus 127 ~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 127 EAVKEHKPDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred HHHHHcCCCEEEEeccccccHHHHHHHHHHHHH
Confidence 9999999999887753 33344444444443
No 462
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=25.47 E-value=3e+02 Score=21.18 Aligned_cols=42 Identities=10% Similarity=0.064 Sum_probs=27.6
Q ss_pred eeeHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEcCCCHHHHHHH
Q 046637 39 QYTWKETHQRCVKLASGLAHL--GISPGDVVAALAPNVPAMYELH 81 (301)
Q Consensus 39 ~~Ty~el~~~~~~la~~L~~~--gv~~g~~V~i~~~n~~~~~~~~ 81 (301)
-+||.|+.+.+.++|..+.+. |.+ .+.|.-+...+..+...+
T Consensus 6 l~s~~~i~~~i~~la~~i~~~~~~~~-~~viv~il~gG~~~a~~L 49 (176)
T PRK05205 6 ILDAEALRRALTRIAHEIIERNKGLD-NLVLVGIKTRGVWLAERL 49 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCC-CeEEEEEccCCHHHHHHH
Confidence 479999999999999999874 432 333333444454444333
No 463
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.42 E-value=5.1e+02 Score=23.47 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=26.0
Q ss_pred CCCCCEEEEEcCCCHHH-HHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 61 ISPGDVVAALAPNVPAM-YELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
+++||+|.+........ ....-.+.+.|+.+..++.....+++...++. +.++|+++
T Consensus 105 l~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~-~tk~V~~e 162 (437)
T PRK05613 105 AGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQP-NTKAFFGE 162 (437)
T ss_pred cCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCc-cCeEEEEE
Confidence 46677665542221111 11112334566666666422245566655543 34445543
No 464
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=25.37 E-value=4.3e+02 Score=22.61 Aligned_cols=51 Identities=10% Similarity=-0.063 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEcCCch
Q 046637 72 PNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVDYQLL 122 (301)
Q Consensus 72 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 122 (301)
..+-.-....++|...|..++.+-|...++.....++..++++++++....
T Consensus 74 SsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~~~~ 124 (317)
T TIGR02991 74 STGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGRSQD 124 (317)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCCCHH
Confidence 344455666677888898776666666667788889999999999987543
No 465
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=25.29 E-value=4e+02 Score=22.12 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHhhhcCCccEEEEC---CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 046637 9 ANYVPLTPISFLERSAVVYRDRPSVVYG---DVQYTWKETHQRCVKLASGLAHLGISPGDVVAAL 70 (301)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~al~~~---~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 70 (301)
.+|.+.+.++.+.++.++--+..++.+- ++.+|-+|-.+.--.+.+.-.+-.+.+.+.+.++
T Consensus 140 ~~~~p~s~yd~Ik~N~~~GLHTl~lLDi~~~~r~Mt~~ea~~~LLe~e~~~~~~~~~~d~~~vvv 204 (260)
T COG1798 140 ENFFPTSPYDVIKENLERGLHTLVLLDIKEDERYMTANEALELLLEAEERRGRGVLTEDTLAVVV 204 (260)
T ss_pred cCcCCCcHHHHHHHhhhcCccceEEEEecccccccCHHHHHHHHHHHHHHhcCCCcCCCceEEEE
Confidence 3567899999999999999999999983 2468888877766666554333234444444433
No 466
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=25.22 E-value=1.6e+02 Score=24.94 Aligned_cols=48 Identities=19% Similarity=0.092 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEEcCCC-HHHHHHHHHhhhcccee-eecCCC
Q 046637 50 VKLASGLAHLGISPGDVVAALAPNV-PAMYELHFGVPMAGAVL-CTLNTR 97 (301)
Q Consensus 50 ~~la~~L~~~gv~~g~~V~i~~~n~-~~~~~~~lA~~~~G~~~-v~l~~~ 97 (301)
+.++..|.++||..+++|.++..++ ....-+.|-.-..|.-= ..|+-+
T Consensus 76 e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG 125 (285)
T COG2897 76 EQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGG 125 (285)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCC
Confidence 6889999999999999999998554 44555666666667533 344433
No 467
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=25.21 E-value=2.3e+02 Score=19.45 Aligned_cols=50 Identities=12% Similarity=-0.065 Sum_probs=35.6
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeec
Q 046637 38 VQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL 94 (301)
Q Consensus 38 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (301)
..+.+.++... +...+..+++.|.+++.++.....+...+...|..-+-.
T Consensus 39 inip~~~l~~~-------l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~ 88 (101)
T TIGR02981 39 INIPLKEIKEH-------IATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYTHAEN 88 (101)
T ss_pred EECCHHHHHHH-------HHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEe
Confidence 46788776543 333344566789999999988888888888899765443
No 468
>PRK14057 epimerase; Provisional
Probab=25.05 E-value=4e+02 Score=22.14 Aligned_cols=63 Identities=10% Similarity=-0.021 Sum_probs=44.1
Q ss_pred HHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccc----------eeeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 53 ASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGA----------VLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 53 a~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~----------~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
...|.+.| .|.|.+..+......-.+-.+-..|+ .-+.++|..+.+.+..++....--.+.+-
T Consensus 91 i~~~~~aG---ad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV 163 (254)
T PRK14057 91 AQACVKAG---AHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAV 163 (254)
T ss_pred HHHHHHhC---CCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEEE
Confidence 33444444 45888888866554444445555664 67899999999999999998876666653
No 469
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=24.84 E-value=5.5e+02 Score=23.57 Aligned_cols=69 Identities=14% Similarity=0.291 Sum_probs=41.4
Q ss_pred eeeHHHHHHHHHHH--------------HHH-HHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeec---------
Q 046637 39 QYTWKETHQRCVKL--------------ASG-LAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTL--------- 94 (301)
Q Consensus 39 ~~Ty~el~~~~~~l--------------a~~-L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l--------- 94 (301)
.-||.+|.+.+..+ |.. +...++++||.| +...-+....-.+...|++++=+
T Consensus 77 d~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~pGd~V----p~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~ 152 (460)
T PRK13237 77 SRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIKPGQYV----PGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQ 152 (460)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCCCcCEE----CCccchHhhHHHHHhCCcEEEeeecccccccc
Confidence 44777777776544 222 334589999964 33333333333367778776633
Q ss_pred -----CCCCCHHHHHHHHHhcC
Q 046637 95 -----NTRHDSAMVSVLLRHSE 111 (301)
Q Consensus 95 -----~~~~~~~~l~~~l~~~~ 111 (301)
.-+.+.+.++..++..+
T Consensus 153 ~~~p~tgnlD~d~Le~~I~~~~ 174 (460)
T PRK13237 153 SDHPFKGNVDLDKLQALIDEVG 174 (460)
T ss_pred cCCCCCCCcCHHHHHHHhcccc
Confidence 33467889999887543
No 470
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=24.82 E-value=4.8e+02 Score=23.29 Aligned_cols=52 Identities=6% Similarity=-0.150 Sum_probs=31.2
Q ss_pred CCCCEEEEeccchhhhhhHHHHHHHHhCCeEEeeC----CCCHHHHHHHHHhcCcceecCC
Q 046637 222 GLMPTYLWCVPMFHCNGWCLTWAVAAQGGTNVCQR----TVNAKEIFDNITRHKVTHFGGA 278 (301)
Q Consensus 222 ~~~~~~l~~~p~~h~~g~~~~~~~l~~g~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~ 278 (301)
+++|.++...|.|..+... +-..|+.++..+ +++++.+.+.+++ ++..+++.
T Consensus 163 ~pgd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~~~~g~~~~~l~~~~~~-~~k~i~~~ 218 (431)
T PRK15481 163 LPGDSVAVEDPCFLSSINM----LRYAGFSASPVSVDAEGMQPEKLERALAQ-GARAVILT 218 (431)
T ss_pred CCCCEEEEeCCCcHHHHHH----HHHcCCeEEeeccCCCCCCHHHHHHHHhc-CCCEEEEC
Confidence 5788889989977655422 234577777664 3566666666543 44444433
No 471
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=24.75 E-value=4.6e+02 Score=22.68 Aligned_cols=16 Identities=0% Similarity=0.117 Sum_probs=9.7
Q ss_pred CHHHHHHHHHhcCcce
Q 046637 259 NAKEIFDNITRHKVTH 274 (301)
Q Consensus 259 ~~~~~~~~i~~~~~t~ 274 (301)
+...+.+.+.++++-.
T Consensus 318 ~~~~i~~~l~~~gi~i 333 (373)
T cd06453 318 HPHDVATILDQYGIAV 333 (373)
T ss_pred CHHHHHHHHHHCCEEe
Confidence 4566666666666543
No 472
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=24.59 E-value=2.5e+02 Score=21.90 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=33.2
Q ss_pred CHHHHHHHHhhhcCCccEEEECC-----------eeeeHHHHHHHHHHHHHHHHhcCCC
Q 046637 15 TPISFLERSAVVYRDRPSVVYGD-----------VQYTWKETHQRCVKLASGLAHLGIS 62 (301)
Q Consensus 15 ~~~~~l~~~~~~~~~~~al~~~~-----------~~~Ty~el~~~~~~la~~L~~~gv~ 62 (301)
.+..++....+.+|+.+.+.... ...++.++.+..+.....|++.|.+
T Consensus 79 ~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~ 137 (178)
T PF14606_consen 79 RLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDK 137 (178)
T ss_dssp HHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34467777888899998887632 3578899999999999999887765
No 473
>PTZ00175 diphthine synthase; Provisional
Probab=24.45 E-value=4.2e+02 Score=22.22 Aligned_cols=63 Identities=8% Similarity=-0.028 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHhhhcCCccEEEECC-------------------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 046637 10 NYVPLTPISFLERSAVVYRDRPSVVYGD-------------------VQYTWKETHQRCVKLASGLAHLGISPGDVVAAL 70 (301)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~al~~~~-------------------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 70 (301)
.+.+.+.++.+..+.++.-+..++.|-. +.++-.|-.++...+...+.+.++.+...|+++
T Consensus 141 ~~~~~s~~~~i~~n~~~glhTl~lldi~~~~~~~~~~~~~~~~~~~~~~M~~~~a~~~l~~i~~~~~~~~~~~~t~~v~v 220 (270)
T PTZ00175 141 TWKPDSFYDKIKANRDNGLHTLCLLDIKVKERSVENLMKGRKIYEPPRYMTINQAIEQLLEVEEKKGGGVIAEDTLVVGV 220 (270)
T ss_pred CCCCCChhHHHHHHHHcCCceEEEEeeeccccchhhhhccccccCCCcCCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEE
Confidence 4566788888888888888888885522 478988888888888888877667666655555
Q ss_pred cC
Q 046637 71 AP 72 (301)
Q Consensus 71 ~~ 72 (301)
..
T Consensus 221 ~r 222 (270)
T PTZ00175 221 AR 222 (270)
T ss_pred EE
Confidence 33
No 474
>PRK06260 threonine synthase; Validated
Probab=24.14 E-value=4.3e+02 Score=23.52 Aligned_cols=88 Identities=16% Similarity=-0.015 Sum_probs=46.9
Q ss_pred ccEEEECCe--eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCC-CHHHHHHH
Q 046637 30 RPSVVYGDV--QYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH-DSAMVSVL 106 (301)
Q Consensus 30 ~~al~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~-~~~~l~~~ 106 (301)
++++..++. +-||++--.. .+.....+.|. +.|... ..+=.-..+.+.+...|.-++.+-|.. .+..-...
T Consensus 84 ~l~~K~E~~nPTGSfKdRga~--~~v~~a~~~g~---~~vv~a-SsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~ 157 (397)
T PRK06260 84 ELYVKHEGANPTGSFKDRGMT--VGVTKALELGV---KTVACA-STGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQ 157 (397)
T ss_pred cEEEEeCCCCCCcCcHHHHHH--HHHHHHHHcCC---CEEEEe-CCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHH
Confidence 677777653 4455544322 22223444553 244432 223223334445557787555554543 34444456
Q ss_pred HHhcCceEEEEcCCchh
Q 046637 107 LRHSEAKIIFVDYQLLP 123 (301)
Q Consensus 107 l~~~~~~~vi~~~~~~~ 123 (301)
++..+++++.++....+
T Consensus 158 ~~~~GA~vi~v~~~~~~ 174 (397)
T PRK06260 158 ALLHGAKVLEVDGNFDD 174 (397)
T ss_pred HHhcCCEEEEECCcHHH
Confidence 78899999999875443
No 475
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=24.13 E-value=4.7e+02 Score=22.54 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=34.3
Q ss_pred CCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCC-CHHHHHHHHHhcCceEEE
Q 046637 60 GISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRH-DSAMVSVLLRHSEAKIIF 116 (301)
Q Consensus 60 gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~-~~~~l~~~l~~~~~~~vi 116 (301)
++.+|++|+|.+.-..-.+++.+ +...|+.++.+...- +.+. ..+++..+++.+.
T Consensus 169 ~~~~g~~vlI~G~G~vG~~a~q~-ak~~G~~vi~~~~~~~~~~~-~~~~~~~Ga~~v~ 224 (355)
T cd08230 169 PTWNPRRALVLGAGPIGLLAALL-LRLRGFEVYVLNRRDPPDPK-ADIVEELGATYVN 224 (355)
T ss_pred ccCCCCEEEEECCCHHHHHHHHH-HHHcCCeEEEEecCCCCHHH-HHHHHHcCCEEec
Confidence 46789999999864444444444 445687666665432 3344 4466788888653
No 476
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.06 E-value=2.7e+02 Score=23.29 Aligned_cols=49 Identities=12% Similarity=-0.034 Sum_probs=42.3
Q ss_pred CceEEEeccCCCCCCCeeeechHHHHHHHHHHHHHhhCCCCCEEEEecc
Q 046637 184 DPIALNYTSGTTSSPKGVICSHRGAYLNSLAAALFNEMGLMPTYLWCVP 232 (301)
Q Consensus 184 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p 232 (301)
.+-+++++=-..|.|.|.+....|+-.-.......+.+.++|+++|.+.
T Consensus 51 ~p~LvF~~QLAHGSptg~Ie~fsnv~ELY~kIAe~F~Is~~dIlfcTlN 99 (334)
T KOG3938|consen 51 RPRLVFHCQLAHGSPTGRIEGFSNVRELYQKIAEAFDISPDDILFCTLN 99 (334)
T ss_pred CCceeEeeeeccCCccceecccccHHHHHHHHHHHhcCCccceEEEecC
Confidence 4567888888889999999999998777778888999999999999953
No 477
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=24.00 E-value=4.6e+02 Score=22.43 Aligned_cols=80 Identities=13% Similarity=0.089 Sum_probs=50.1
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHh----hhcc--ceeeecCCCCCHHHHHHHHHhcCc-
Q 046637 40 YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGV----PMAG--AVLCTLNTRHDSAMVSVLLRHSEA- 112 (301)
Q Consensus 40 ~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~----~~~G--~~~v~l~~~~~~~~l~~~l~~~~~- 112 (301)
+.+.+....+..+-..|.+.|+ .++|++.|..+.+...+.- ...- +..+-.+..-.++.+..+++..+.
T Consensus 27 i~~~~~~~~~~e~L~~L~~~Gi----~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~~~pk~~~i~~~~~~l~i~ 102 (320)
T TIGR01686 27 LNLSPLHKTLQEKIKTLKKQGF----LLALASKNDEDDAKKVFERRKDFILQAEDFDARSINWGPKSESLRKIAKKLNLG 102 (320)
T ss_pred cccCccHHHHHHHHHHHHhCCC----EEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEecCchHHHHHHHHHHhCCC
Confidence 3444555666666666766554 5999999998877776654 2111 233334445556778888877753
Q ss_pred --eEEEEcCCchh
Q 046637 113 --KIIFVDYQLLP 123 (301)
Q Consensus 113 --~~vi~~~~~~~ 123 (301)
.++++++...+
T Consensus 103 ~~~~vfidD~~~d 115 (320)
T TIGR01686 103 TDSFLFIDDNPAE 115 (320)
T ss_pred cCcEEEECCCHHH
Confidence 56777776554
No 478
>PRK07671 cystathionine beta-lyase; Provisional
Probab=23.53 E-value=5.1e+02 Score=22.80 Aligned_cols=73 Identities=15% Similarity=0.019 Sum_probs=46.0
Q ss_pred HHHHHHHHHhc-CCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCH--HHHHHHHHhcCceEEEEcCCchhhH
Q 046637 49 CVKLASGLAHL-GISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDS--AMVSVLLRHSEAKIIFVDYQLLPIA 125 (301)
Q Consensus 49 ~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~--~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (301)
+..+...|.++ |.. . +++..|+...+.+++++...|-.++..++.+.. ..+...+...++++.+++....+.+
T Consensus 52 ~~~Le~~lA~l~g~~---~-~~~~~sG~aai~~~~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l 127 (377)
T PRK07671 52 RAALEELIAVLEGGH---A-GFAFGSGMAAITAVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEV 127 (377)
T ss_pred HHHHHHHHHHHhCCC---c-eEEeCCHHHHHHHHHHHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHHHH
Confidence 34444555553 432 2 366777777666777777788777777776653 3445677788899888875544433
No 479
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=23.41 E-value=1.8e+02 Score=23.29 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=37.5
Q ss_pred hcCCCCCCEEEEEcCCCHH---H-HHHHHHhhhc-cceeeecCCCCCHHHHHHHHHhcCc
Q 046637 58 HLGISPGDVVAALAPNVPA---M-YELHFGVPMA-GAVLCTLNTRHDSAMVSVLLRHSEA 112 (301)
Q Consensus 58 ~~gv~~g~~V~i~~~n~~~---~-~~~~lA~~~~-G~~~v~l~~~~~~~~l~~~l~~~~~ 112 (301)
.-|+.+|..+.|.++++.- + .-..++.+.. |-.++.+....+++++.+.++..+.
T Consensus 13 ~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~ 72 (226)
T PF06745_consen 13 GGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGW 72 (226)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS
T ss_pred cCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCC
Confidence 3489999999999999762 2 2223334455 8788888888899988888877754
No 480
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=23.26 E-value=4.5e+02 Score=22.30 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=41.9
Q ss_pred EEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHH
Q 046637 32 SVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVS 104 (301)
Q Consensus 32 al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 104 (301)
|-.+.+...|-.| ++..++-..+.++++++|++|.=++- +. --.+.+|+-..|+.++.+ +.|.+...
T Consensus 43 cayf~~~~~tL~e--AQ~~k~~~~~~kl~L~~G~~lLDiGC-GW-G~l~~~aA~~y~v~V~Gv--TlS~~Q~~ 109 (283)
T COG2230 43 CAYFEDPDMTLEE--AQRAKLDLILEKLGLKPGMTLLDIGC-GW-GGLAIYAAEEYGVTVVGV--TLSEEQLA 109 (283)
T ss_pred eEEeCCCCCChHH--HHHHHHHHHHHhcCCCCCCEEEEeCC-Ch-hHHHHHHHHHcCCEEEEe--eCCHHHHH
Confidence 3334444445554 34455666677889999999887664 33 344566666778888887 44444433
No 481
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=23.21 E-value=5.3e+02 Score=22.87 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=26.8
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHhhhccce--eeecCC----CCCHHHHHHHHHhcCceEEEE
Q 046637 61 ISPGDVVAALAPNVPAMYELHFGVPMAGAV--LCTLNT----RHDSAMVSVLLRHSEAKIIFV 117 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~--~v~l~~----~~~~~~l~~~l~~~~~~~vi~ 117 (301)
.++||.|++..|.-..+.. .+...|+. .+++++ ....+++...++. ++++++.
T Consensus 125 ~~~gd~vlv~~P~y~~~~~---~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~-~~~~i~~ 183 (412)
T PTZ00433 125 CDEGDNILVPAPGFPHYET---VCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDD-RTKALIM 183 (412)
T ss_pred cCCCCEEEEccCCcccHHH---HHHHcCCEEEEEecCccccCcCCHHHHHHHhcc-CceEEEE
Confidence 3567777777665433322 23334443 344433 2345666665543 4565555
No 482
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=23.14 E-value=3.4e+02 Score=20.61 Aligned_cols=108 Identities=9% Similarity=-0.029 Sum_probs=57.8
Q ss_pred CCCCCCCHHHHHHHHhhhcCCccEEEECCeeeeHH---HHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhh
Q 046637 9 ANYVPLTPISFLERSAVVYRDRPSVVYGDVQYTWK---ETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVP 85 (301)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~Ty~---el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~ 85 (301)
+++....+.++-....++..-+..+.+.+.++++. ++...+..+-..|++.| .+++++..++....+..+ .-
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~g----~~l~I~Sn~~~~~~~~~~-~~ 79 (170)
T TIGR01668 5 PHAIVKTLNDLTIDLLKKVGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAAG----RKLLIVSNNAGEQRAKAV-EK 79 (170)
T ss_pred cccccCchhhCCHHHHHHCCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHcC----CEEEEEeCCchHHHHHHH-HH
Confidence 34444455554444555566566777766665542 23445555555566554 568888877632222222 12
Q ss_pred hccceeeecCCCCCHHHHHHHHHhcCc---eEEEEcCCc
Q 046637 86 MAGAVLCTLNTRHDSAMVSVLLRHSEA---KIIFVDYQL 121 (301)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~---~~vi~~~~~ 121 (301)
..|.....-...-.++-+..+++..+. .++++.+..
T Consensus 80 ~~gl~~~~~~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~ 118 (170)
T TIGR01668 80 ALGIPVLPHAVKPPGCAFRRAHPEMGLTSEQVAVVGDRL 118 (170)
T ss_pred HcCCEEEcCCCCCChHHHHHHHHHcCCCHHHEEEECCcc
Confidence 455444332233355677777777654 355555544
No 483
>PRK12342 hypothetical protein; Provisional
Probab=23.03 E-value=4.4e+02 Score=21.89 Aligned_cols=82 Identities=11% Similarity=0.134 Sum_probs=51.0
Q ss_pred CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE-EcCCCHHHHHHHHHhhhccc-eeeecC--------CCCCHHHHHH
Q 046637 36 GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAA-LAPNVPAMYELHFGVPMAGA-VLCTLN--------TRHDSAMVSV 105 (301)
Q Consensus 36 ~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i-~~~n~~~~~~~~lA~~~~G~-~~v~l~--------~~~~~~~l~~ 105 (301)
.+-.+--+.++..+...|-.|++.| |+.+++ ++|.+.+-....--++..|+ -.+.+. +..+...|..
T Consensus 27 ~~~~~~iNp~D~~AlE~AlrLk~~g---~~Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~~g~D~~ata~~La~ 103 (254)
T PRK12342 27 DNAEAKISQFDLNAIEAASQLATDG---DEIAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAA 103 (254)
T ss_pred CCCCccCChhhHHHHHHHHHHhhcC---CEEEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHH
Confidence 3445566788888989998898543 555555 45555444433343555565 223332 2223577888
Q ss_pred HHHhcCceEEEEcCC
Q 046637 106 LLRHSEAKIIFVDYQ 120 (301)
Q Consensus 106 ~l~~~~~~~vi~~~~ 120 (301)
.++..++++||+-.+
T Consensus 104 ~i~~~~~DLVl~G~~ 118 (254)
T PRK12342 104 AIEKIGFDLLLFGEG 118 (254)
T ss_pred HHHHhCCCEEEEcCC
Confidence 888889999999644
No 484
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=22.99 E-value=87 Score=20.78 Aligned_cols=37 Identities=32% Similarity=0.378 Sum_probs=23.3
Q ss_pred eeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHH
Q 046637 40 YTWKETHQRCVKLASGLAH-LGISPGDVVAALAPNVPA 76 (301)
Q Consensus 40 ~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~ 76 (301)
-|=.+=.+.-..++..|.+ .|+.+.|...++.+|..+
T Consensus 40 Rs~e~K~~ly~~l~~~L~~~~gi~p~Dv~I~l~e~~~e 77 (82)
T PF14552_consen 40 RSTEQKKALYRALAERLAEKLGIRPEDVMIVLVENPRE 77 (82)
T ss_dssp --HHHHHHHHHHHHHHHHHHH---GGGEEEEEEEE-GG
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEECCcc
Confidence 3445555666778888876 699999998888887654
No 485
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=22.63 E-value=5.3e+02 Score=22.66 Aligned_cols=16 Identities=0% Similarity=0.115 Sum_probs=8.9
Q ss_pred CHHHHHHHHHhcCcce
Q 046637 259 NAKEIFDNITRHKVTH 274 (301)
Q Consensus 259 ~~~~~~~~i~~~~~t~ 274 (301)
+...+.+.+.+.++-+
T Consensus 337 ~~~~~~~~L~~~gI~v 352 (401)
T PRK10874 337 HHSDLVTLLAEYGIAL 352 (401)
T ss_pred CHHHHHHHHHHCCcEE
Confidence 4456666666655543
No 486
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=22.58 E-value=5.5e+02 Score=22.84 Aligned_cols=12 Identities=33% Similarity=0.493 Sum_probs=5.6
Q ss_pred CCCCEEEEEcCC
Q 046637 62 SPGDVVAALAPN 73 (301)
Q Consensus 62 ~~g~~V~i~~~n 73 (301)
++|+.|.+..+.
T Consensus 120 ~~gd~vl~~~~~ 131 (424)
T PLN02855 120 KPGDEVILSVAE 131 (424)
T ss_pred CCcCEEEECCCc
Confidence 445554444433
No 487
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=22.58 E-value=4.9e+02 Score=22.18 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=12.9
Q ss_pred EEEeccCCC-CCCC--eeeechHHHHHH
Q 046637 187 ALNYTSGTT-SSPK--GVICSHRGAYLN 211 (301)
Q Consensus 187 ~i~~TSGtT-G~pK--~v~~s~~~l~~~ 211 (301)
+++++...+ +.|. |..+..+.++..
T Consensus 180 ~~~~s~~K~l~~~~G~g~~~~~~~~~~~ 207 (355)
T TIGR03301 180 ALIASANKCLEGVPGFGFVIARRDLLEA 207 (355)
T ss_pred EEEecCCcccccCCceeEEEECHHHHHH
Confidence 444444442 2333 677777766544
No 488
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=22.54 E-value=5.2e+02 Score=22.49 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=38.1
Q ss_pred HhhCCCCCEEEEeccchhhhhhHH-HHHHHHhCCeEEeeC------CCCHHHHHHHHHhc-C---cceecCChHHHHHHH
Q 046637 218 FNEMGLMPTYLWCVPMFHCNGWCL-TWAVAAQGGTNVCQR------TVNAKEIFDNITRH-K---VTHFGGAPTVLNMIA 286 (301)
Q Consensus 218 ~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~g~~~v~~~------~~~~~~~~~~i~~~-~---~t~~~~~P~~~~~l~ 286 (301)
.+++.++|.++...- .+.. .-..+..|+..|+.+ ..+++.+.+.+.+. + +++++..|.-+..+.
T Consensus 59 ~l~~~~gdeVi~p~~-----t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h~~G~~~d~~~i~ 133 (363)
T PF01041_consen 59 ALGLGPGDEVIVPAY-----TFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVHLFGNPADMDAIR 133 (363)
T ss_dssp HTTGGTTSEEEEESS-----S-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE-GGGB---HHHHH
T ss_pred hcCCCcCceEecCCC-----cchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEecCCCCcccHHHHH
Confidence 467778887666422 2222 233466799999986 35788988888754 3 788888887777664
Q ss_pred c
Q 046637 287 N 287 (301)
Q Consensus 287 ~ 287 (301)
+
T Consensus 134 ~ 134 (363)
T PF01041_consen 134 A 134 (363)
T ss_dssp H
T ss_pred H
Confidence 3
No 489
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.53 E-value=5e+02 Score=22.26 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHH---HHHHhhhcccee--eecCCCCCHHHHHHHHHhcC----ceE
Q 046637 44 ETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYE---LHFGVPMAGAVL--CTLNTRHDSAMVSVLLRHSE----AKI 114 (301)
Q Consensus 44 el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~--v~l~~~~~~~~l~~~l~~~~----~~~ 114 (301)
++.+....-...|.+.|++|+=.+.+.+++...... -.=+|-..|..+ .-++++.+.+++...++..+ .+-
T Consensus 15 ~i~~~lk~~i~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~G 94 (301)
T PRK14194 15 RVLAQVREDVRTLKAAGIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNG 94 (301)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCe
Confidence 444445555555666688886444444444322222 223788888755 45667778888888887664 345
Q ss_pred EEEcCCch
Q 046637 115 IFVDYQLL 122 (301)
Q Consensus 115 vi~~~~~~ 122 (301)
++.+-..-
T Consensus 95 IlvqlPLP 102 (301)
T PRK14194 95 ILLQLPLP 102 (301)
T ss_pred EEEeCCCC
Confidence 77775543
No 490
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=22.43 E-value=4.1e+02 Score=21.39 Aligned_cols=71 Identities=15% Similarity=-0.076 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhcCCccEEEECCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHhhhccceee
Q 046637 16 PISFLERSAVVYRDRPSVVYGDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPA-MYELHFGVPMAGAVLC 92 (301)
Q Consensus 16 ~~~~l~~~~~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v 92 (301)
+.++.+...+..++.+.+.|.....+=.++.+.+..+-..+-. -.+.+.+.|+.. .+...++++.+|+..+
T Consensus 139 ~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~------~~l~~H~Hnd~Gla~An~laA~~aGa~~i 210 (237)
T PF00682_consen 139 LLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD------IPLGFHAHNDLGLAVANALAALEAGADRI 210 (237)
T ss_dssp HHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT------SEEEEEEBBTTS-HHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC------CeEEEEecCCccchhHHHHHHHHcCCCEE
Confidence 3455566666678888888877777777777666666554432 478898888775 4667888889998775
No 491
>PRK06608 threonine dehydratase; Provisional
Probab=22.40 E-value=5.2e+02 Score=22.44 Aligned_cols=89 Identities=11% Similarity=0.039 Sum_probs=51.5
Q ss_pred cCCccEEEECCee--eeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHH
Q 046637 27 YRDRPSVVYGDVQ--YTWKETHQRCVKLASGLAHLGISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVS 104 (301)
Q Consensus 27 ~~~~~al~~~~~~--~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 104 (301)
.+.++++..++.. -|++. +.+...-..+.+.|..+ +.|.-. ..+=.-....++|...|..++.+-|....++-.
T Consensus 36 ~g~~l~~K~E~~nptGS~K~--R~a~~~v~~a~~~g~~~-~~vv~~-SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~ 111 (338)
T PRK06608 36 LGHEIFFKVESLQKTGAFKV--RGVLNHLLELKEQGKLP-DKIVAY-STGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQ 111 (338)
T ss_pred hCCEEEEEeCCCCCCCCcHH--HHHHHHHHHhhhhcCcC-CeEEEE-CCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 3446777776632 23322 22222222344445322 233322 333334445577778898766666666667788
Q ss_pred HHHHhcCceEEEEcC
Q 046637 105 VLLRHSEAKIIFVDY 119 (301)
Q Consensus 105 ~~l~~~~~~~vi~~~ 119 (301)
..++..++++++++.
T Consensus 112 ~~l~~~GA~V~~~~~ 126 (338)
T PRK06608 112 QAALYYGGEVILTNT 126 (338)
T ss_pred HHHHhCCCEEEEECC
Confidence 999999999999964
No 492
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=22.39 E-value=92 Score=20.63 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCCCCCCEEEEEc
Q 046637 50 VKLASGLAHLGISPGDVVAALA 71 (301)
Q Consensus 50 ~~la~~L~~~gv~~g~~V~i~~ 71 (301)
..++..+.+..+++||+|++++
T Consensus 55 ~~L~~~~~~g~~~~Gd~vl~~~ 76 (90)
T PF08541_consen 55 INLADALEEGRIKPGDRVLLVG 76 (90)
T ss_dssp HHHHHHHHTTSSCTTEEEEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEE
Confidence 4556667766799999999874
No 493
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=22.39 E-value=1.2e+02 Score=17.33 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=13.7
Q ss_pred HHhcCCCCCCEEEEEcCC
Q 046637 56 LAHLGISPGDVVAALAPN 73 (301)
Q Consensus 56 L~~~gv~~g~~V~i~~~n 73 (301)
..++|+++||.|.+...+
T Consensus 16 ~~~l~l~~Gd~v~i~~~~ 33 (47)
T PF04014_consen 16 REKLGLKPGDEVEIEVEG 33 (47)
T ss_dssp HHHTTSSTTTEEEEEEET
T ss_pred HHHcCCCCCCEEEEEEeC
Confidence 456799999998886544
No 494
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=22.38 E-value=3.7e+02 Score=20.72 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=50.2
Q ss_pred EEEE-CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC-CHHHHHHHHHhhhcc------------ceeeecCCC
Q 046637 32 SVVY-GDVQYTWKETHQRCVKLASGLAHLGISPGDVVAALAPN-VPAMYELHFGVPMAG------------AVLCTLNTR 97 (301)
Q Consensus 32 al~~-~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n-~~~~~~~~lA~~~~G------------~~~v~l~~~ 97 (301)
-+++ .++.++ |+..+..+-..|.+. |-.+++.+.+ .+++.-.+|..+.+. +...-+.|+
T Consensus 35 ~v~D~~g~~v~---lypdv~~iL~~L~~~----gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g 107 (169)
T PF12689_consen 35 VVVDSRGEEVS---LYPDVPEILQELKER----GVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG 107 (169)
T ss_dssp -EEETT--EE------TTHHHHHHHHHHC----T--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS
T ss_pred EEEeCCCCEEE---eCcCHHHHHHHHHHC----CCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecC
Confidence 3444 344554 233444555556664 4459999865 588888888888777 345677888
Q ss_pred CCHHHHHHHHHhcCc---eEEEEcCCchhh
Q 046637 98 HDSAMVSVLLRHSEA---KIIFVDYQLLPI 124 (301)
Q Consensus 98 ~~~~~l~~~l~~~~~---~~vi~~~~~~~~ 124 (301)
.....+..+.+.++. +++|.|++....
T Consensus 108 sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~ 137 (169)
T PF12689_consen 108 SKTTHFRRIHRKTGIPYEEMLFFDDESRNI 137 (169)
T ss_dssp -HHHHHHHHHHHH---GGGEEEEES-HHHH
T ss_pred chHHHHHHHHHhcCCChhHEEEecCchhcc
Confidence 778889988888876 489999887653
No 495
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=22.38 E-value=2.3e+02 Score=24.18 Aligned_cols=53 Identities=23% Similarity=0.217 Sum_probs=33.3
Q ss_pred EEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHH----HHHHHHhcCceEEEEcCC
Q 046637 66 VVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAM----VSVLLRHSEAKIIFVDYQ 120 (301)
Q Consensus 66 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~----l~~~l~~~~~~~vi~~~~ 120 (301)
.|.+.+|..+.---.+.+++.. ..+|..++.+..+ ..++++..+++++|.|+-
T Consensus 98 Vv~vq~P~~p~~~~~Y~~IL~~--lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~ 154 (302)
T PF05621_consen 98 VVYVQMPPEPDERRFYSAILEA--LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEF 154 (302)
T ss_pred EEEEecCCCCChHHHHHHHHHH--hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeech
Confidence 5677788777544444433332 2245555554433 458899999999999864
No 496
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=22.38 E-value=5.6e+02 Score=22.80 Aligned_cols=74 Identities=12% Similarity=0.097 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhc-C--CCCCCEEEEEcCCCHHHHHHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 43 KETHQRCVKLASGLAHL-G--ISPGDVVAALAPNVPAMYELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 43 ~el~~~~~~la~~L~~~-g--v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
+-+.+.-+.+|..+.+. | +.+.+-|.+-.........++.++..-|=-++..+|.++.-. ..+...+++.+.+.
T Consensus 65 ~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~--~~~~~~gg~~v~v~ 141 (393)
T COG0436 65 AGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYE--AAVKLAGGKPVPVP 141 (393)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHH--HHHHhcCCEEEEEe
Confidence 44555556667777655 4 556665777777777788899999999877888888887654 44555666666665
No 497
>PLN02271 serine hydroxymethyltransferase
Probab=22.36 E-value=4.7e+02 Score=24.76 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=36.0
Q ss_pred CCCCCEEEEEcCCCHHHHHHHH------Hhhhcccee--ee--cCCC---CCHHHHHHHHHhcCceEEEEcCC
Q 046637 61 ISPGDVVAALAPNVPAMYELHF------GVPMAGAVL--CT--LNTR---HDSAMVSVLLRHSEAKIIFVDYQ 120 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~~~~l------A~~~~G~~~--v~--l~~~---~~~~~l~~~l~~~~~~~vi~~~~ 120 (301)
++|||+|+.+-..+--.+.... -+...|..+ ++ +++. ...+++..+....+|++|++...
T Consensus 235 l~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~S 307 (586)
T PLN02271 235 LLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGS 307 (586)
T ss_pred cCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECch
Confidence 5678888886554443333221 123344332 22 3322 35688888888899999999764
No 498
>PRK06234 methionine gamma-lyase; Provisional
Probab=22.30 E-value=5.6e+02 Score=22.78 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=29.8
Q ss_pred CCCCCEEEEEcCCCHHHH-HHHHHhhhccceeeecCCCCCHHHHHHHHHhcCceEEEEc
Q 046637 61 ISPGDVVAALAPNVPAMY-ELHFGVPMAGAVLCTLNTRHDSAMVSVLLRHSEAKIIFVD 118 (301)
Q Consensus 61 v~~g~~V~i~~~n~~~~~-~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (301)
+++||.|.+..+.-.... ....++...|+.+..++.. ..+++...++. +.++|+++
T Consensus 100 l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-d~e~l~~~i~~-~tklI~ie 156 (400)
T PRK06234 100 LKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS-NLEEVRNALKA-NTKVVYLE 156 (400)
T ss_pred hCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC-CHHHHHHHhcc-CCeEEEEE
Confidence 567777766554322222 2223445567766666543 45666666542 45666654
No 499
>COG2746 Aminoglycoside N3'-acetyltransferase [Defense mechanisms]
Probab=22.24 E-value=1.1e+02 Score=25.24 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCC
Q 046637 49 CVKLASGLAHLGISPGDVVAALAPNV 74 (301)
Q Consensus 49 ~~~la~~L~~~gv~~g~~V~i~~~n~ 74 (301)
...+...|.++|+++|+.|.+.+.++
T Consensus 14 ~~~l~~~l~~lG~k~G~~v~vHssl~ 39 (251)
T COG2746 14 SQDLKDDLYKLGLKEGDTVIVHSSLS 39 (251)
T ss_pred HHHHHHHHHHhcCCCCCEEEEehhhh
Confidence 45667778899999999999987764
No 500
>CHL00195 ycf46 Ycf46; Provisional
Probab=22.21 E-value=6.3e+02 Score=23.37 Aligned_cols=71 Identities=10% Similarity=0.125 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHHHHHHhhhccceeeecCCC--------CCHHHHHHHHH---hcCceE
Q 046637 48 RCVKLASGLAHLGISPGDVVAALAPNVPA--MYELHFGVPMAGAVLCTLNTR--------HDSAMVSVLLR---HSEAKI 114 (301)
Q Consensus 48 ~~~~la~~L~~~gv~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~--------~~~~~l~~~l~---~~~~~~ 114 (301)
+...+.....+.|+.+...|.+++|.+.- .++-.+ +...|..++-++.. .+...+..+++ ...|.+
T Consensus 243 ~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkai-A~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~I 321 (489)
T CHL00195 243 RSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAI-ANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCI 321 (489)
T ss_pred HHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHH-HHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcE
Confidence 33444445566788888889999999763 332223 33456666655442 23334444443 344555
Q ss_pred EEEcC
Q 046637 115 IFVDY 119 (301)
Q Consensus 115 vi~~~ 119 (301)
++.|+
T Consensus 322 L~IDE 326 (489)
T CHL00195 322 LWIDE 326 (489)
T ss_pred EEehh
Confidence 55553
Done!