BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046638
         (306 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 628

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/306 (64%), Positives = 236/306 (77%), Gaps = 2/306 (0%)

Query: 3   ILTYSRCDSSL--DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           +  YS C SS   DF  V S V   +QISWNA+I G  NLG+GE ALKCFS+MRQAGID+
Sbjct: 323 VTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMRQAGIDM 382

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D FT TS++ AIG+IS   EGKQ+HAL+ K GY SN+ VQN LV MYA CG+INDA +VF
Sbjct: 383 DLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVF 442

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           S MD  D++SWNSLL GCA+HGY REAV+LFEQM+++ +KPD TTFLVVLSAC H G +D
Sbjct: 443 SLMDRHDVISWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACRHVGLLD 502

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           KGL+YF LMRND SLE P  EHY+++V L  RAG+L+EAE FIN+M   PGPSVYKALLS
Sbjct: 503 KGLEYFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIEPGPSVYKALLS 562

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           ACQVHGN EIAVR AK++L + PNDP IYVLLSNV      WD+   IR +M +RG+RK+
Sbjct: 563 ACQVHGNVEIAVRCAKKLLQMCPNDPVIYVLLSNVQATVGYWDNVASIRKVMCDRGVRKE 622

Query: 301 PGYSWV 306
           PGYSW+
Sbjct: 623 PGYSWI 628



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 125/253 (49%), Gaps = 7/253 (2%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN I+W +++AG+ +      A+    +M++ GI ++Y T   ++ +    +     KQ+
Sbjct: 244 RNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHCKQV 303

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAIC--GAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           H  I + G +SN +++  LV +Y+ C   ++ D NKV S +   D +SWN+++ G ++ G
Sbjct: 304 HCRIIREGLESNSYLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLG 363

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEH 202
               A++ F +M++  I  D  TF  VL A      +D+G Q   L+           ++
Sbjct: 364 NGEAALKCFSKMRQAGIDMDLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQN 423

Query: 203 YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR--SAKRVLD 260
              +V +  R G +N+A+   + M R+   S + +LLS C  HG    AV      R   
Sbjct: 424 --GLVSMYARCGSINDAKRVFSLMDRHDVIS-WNSLLSGCAYHGYGREAVELFEQMRRSG 480

Query: 261 LWPNDPAIYVLLS 273
           + P++    V+LS
Sbjct: 481 VKPDNTTFLVVLS 493



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 93/167 (55%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +    Q ++  +  RN ++WN++I+G+ ++G  E A++ F EM + GID   F++
Sbjct: 124 YGKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSV 183

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++     +   K G Q+H L  K G+  N+ V   L+ +Y+    I+ +  +F  M E
Sbjct: 184 SAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDLMPE 243

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           R++++W S++ G AH      A+ L   MQ+  I+ +  T+  +LS+
Sbjct: 244 RNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSS 290



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 73/138 (52%)

Query: 47  LKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFM 106
           LK  ++++Q G       +  +V +         G Q+H+ I K+G+DSNV++ + LV M
Sbjct: 64  LKLLAQLQQHGSAPTAHILNRMVSSCAKSGSVFVGIQLHSTIIKVGFDSNVYICSALVDM 123

Query: 107 YAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
           Y  CGA++ A ++F  M  R++V+WNSL+ G  H G    A++LF +M K  I P   + 
Sbjct: 124 YGKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSV 183

Query: 167 LVVLSACCHAGFIDKGLQ 184
             VL  C        G+Q
Sbjct: 184 SAVLVGCWRMEDTKLGIQ 201


>gi|297746034|emb|CBI16090.3| unnamed protein product [Vitis vinifera]
          Length = 458

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/306 (64%), Positives = 236/306 (77%), Gaps = 2/306 (0%)

Query: 3   ILTYSRCDSSL--DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           +  YS C SS   DF  V S V   +QISWNA+I G  NLG+GE ALKCFS+MRQAGID+
Sbjct: 153 VTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMRQAGIDM 212

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D FT TS++ AIG+IS   EGKQ+HAL+ K GY SN+ VQN LV MYA CG+INDA +VF
Sbjct: 213 DLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVF 272

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           S MD  D++SWNSLL GCA+HGY REAV+LFEQM+++ +KPD TTFLVVLSAC H G +D
Sbjct: 273 SLMDRHDVISWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACRHVGLLD 332

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           KGL+YF LMRND SLE P  EHY+++V L  RAG+L+EAE FIN+M   PGPSVYKALLS
Sbjct: 333 KGLEYFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIEPGPSVYKALLS 392

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           ACQVHGN EIAVR AK++L + PNDP IYVLLSNV      WD+   IR +M +RG+RK+
Sbjct: 393 ACQVHGNVEIAVRCAKKLLQMCPNDPVIYVLLSNVQATVGYWDNVASIRKVMCDRGVRKE 452

Query: 301 PGYSWV 306
           PGYSW+
Sbjct: 453 PGYSWI 458



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 125/253 (49%), Gaps = 7/253 (2%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN I+W +++AG+ +      A+    +M++ GI ++Y T   ++ +    +     KQ+
Sbjct: 74  RNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHCKQV 133

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAIC--GAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           H  I + G +SN +++  LV +Y+ C   ++ D NKV S +   D +SWN+++ G ++ G
Sbjct: 134 HCRIIREGLESNSYLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLG 193

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEH 202
               A++ F +M++  I  D  TF  VL A      +D+G Q   L+           ++
Sbjct: 194 NGEAALKCFSKMRQAGIDMDLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQN 253

Query: 203 YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR--SAKRVLD 260
              +V +  R G +N+A+   + M R+   S + +LLS C  HG    AV      R   
Sbjct: 254 --GLVSMYARCGSINDAKRVFSLMDRHDVIS-WNSLLSGCAYHGYGREAVELFEQMRRSG 310

Query: 261 LWPNDPAIYVLLS 273
           + P++    V+LS
Sbjct: 311 VKPDNTTFLVVLS 323



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 64/120 (53%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           M + GID   F++++++     +   K G Q+H L  K G+  N+ V   L+ +Y+    
Sbjct: 1   MVKVGIDPTPFSVSAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWN 60

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           I+ +  +F  M ER++++W S++ G AH      A+ L   MQ+  I+ +  T+  +LS+
Sbjct: 61  IDASRLMFDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSS 120


>gi|255559012|ref|XP_002520529.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540371|gb|EEF41942.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/305 (61%), Positives = 240/305 (78%), Gaps = 1/305 (0%)

Query: 3   ILTYSRCDSSL-DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           +  YS+C ++L DF  + S V+  +QISWNA+IAG+ NLG GE ALKCF EMR A I +D
Sbjct: 302 VTVYSKCTNNLEDFNKISSGVQLSDQISWNAVIAGYSNLGLGEDALKCFCEMRHANIKMD 361

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           ++T TS++GAIG     +EG++MHALI K GY S+V+VQN LV MYA CGAI+D+ +VF 
Sbjct: 362 FYTFTSLLGAIGAFLAIEEGREMHALIVKTGYASSVYVQNGLVSMYARCGAIDDSKRVFW 421

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M++ D+VSWN+LL GCAHHG+  EAV+LFEQM+KT+IKP+ TTFL VLSAC H G +DK
Sbjct: 422 LMEDHDVVSWNALLTGCAHHGFGNEAVELFEQMRKTKIKPNSTTFLAVLSACSHVGSVDK 481

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           GL+YF  MR+D SLEP R EHY ++V + GRAG+L+EAE+ IN M  +PGPSVYKALLSA
Sbjct: 482 GLEYFDFMRSDISLEPLRVEHYASVVDIFGRAGYLSEAEAIINCMPMDPGPSVYKALLSA 541

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C VHGNREIAVRSA+++L+LWP+DPA Y+LLSN+      WDDA D+R LM +RG+RK P
Sbjct: 542 CLVHGNREIAVRSARKLLELWPDDPATYILLSNMLATEGYWDDAADVRKLMCDRGVRKNP 601

Query: 302 GYSWV 306
           GYSW+
Sbjct: 602 GYSWI 606



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 129/274 (47%), Gaps = 6/274 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+CD   D   V+  +  +N ++W A++  +      ++A+    EM + GI  +Y T 
Sbjct: 204 YSKCDGVDDSWRVFDYMVDKNVVTWTAMVTAYAQNEQPDEAMILVREMMRLGIKANYVTY 263

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC-GAINDANKVFSSMD 124
            S++ +       +  KQ+H  I + G + N+++   LV +Y+ C   + D NK+ S + 
Sbjct: 264 NSLLSSFSGPKYMQYCKQVHCSIIRCGLECNLYIAATLVTVYSKCTNNLEDFNKISSGVQ 323

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             D +SWN+++ G ++ G   +A++ F +M+   IK D  TF  +L A      I++G +
Sbjct: 324 LSDQISWNAVIAGYSNLGLGEDALKCFCEMRHANIKMDFYTFTSLLGAIGAFLAIEEGRE 383

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
              L+           ++   +V +  R G +++++     M  +   S + ALL+ C  
Sbjct: 384 MHALIVKTGYASSVYVQN--GLVSMYARCGAIDDSKRVFWLMEDHDVVS-WNALLTGCAH 440

Query: 245 H--GNREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276
           H  GN  + +    R   + PN      +LS  S
Sbjct: 441 HGFGNEAVELFEQMRKTKIKPNSTTFLAVLSACS 474



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 88/167 (52%), Gaps = 11/167 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        V++ +  RN ++WN++I G+ N+            MR     +  F++
Sbjct: 114 YAKCSEIQSAHEVFNEMPERNDVTWNSLIFGYLNVMPT-------CAMR----GVTSFSV 162

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++ +     +     G Q+H L  K+G+D+NVFV   L+ MY+ C  ++D+ +VF  M +
Sbjct: 163 STCLVVCSQLEVRNFGAQVHGLSLKLGFDNNVFVGTALIDMYSKCDGVDDSWRVFDYMVD 222

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           +++V+W +++   A +    EA+ L  +M +  IK +  T+  +LS+
Sbjct: 223 KNVVTWTAMVTAYAQNEQPDEAMILVREMMRLGIKANYVTYNSLLSS 269



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           +R       YF I  +V      + +  G Q+H+ I ++G+ SNV + + +V MYA C  
Sbjct: 61  LRNGSFSNPYF-INKVVSFCAKFASYDLGIQLHSTIIRMGFTSNVHICSAVVDMYAKCSE 119

Query: 113 INDANKVFSSMDERDLVSWNSLLLG 137
           I  A++VF+ M ER+ V+WNSL+ G
Sbjct: 120 IQSAHEVFNEMPERNDVTWNSLIFG 144


>gi|224106429|ref|XP_002314162.1| predicted protein [Populus trichocarpa]
 gi|222850570|gb|EEE88117.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/305 (62%), Positives = 235/305 (77%), Gaps = 1/305 (0%)

Query: 3   ILTYSRCDSSL-DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           +  YS+C SSL DF+ V S V T + I+WNA+IAG+  LG  E+AL+CF EM+QAGIDID
Sbjct: 313 VTVYSKCSSSLEDFKKVCSVVMTCDNIAWNAVIAGYSKLGRHEEALRCFHEMKQAGIDID 372

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +T+TS+VGAIG  S  +EGK MHALI + GY S++ VQN LV MYA CGAI D+ +VF 
Sbjct: 373 SYTLTSVVGAIGNSSFLEEGKAMHALIHRTGYISHLNVQNGLVSMYARCGAIGDSKRVFW 432

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M+E D++SWN+LL   AHHGY REAV+LFEQM+KTEIKP+ +TFL VL AC H GF+DK
Sbjct: 433 FMEEHDVISWNALLTAFAHHGYGREAVELFEQMRKTEIKPNSSTFLAVLCACSHVGFVDK 492

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G++YF  M++D  LEP + EHY ++V   GRAG+LNEAE+FINSM   P PSVYKALLSA
Sbjct: 493 GIEYFDTMKSDILLEPLKVEHYASLVDTFGRAGYLNEAEAFINSMPIVPAPSVYKALLSA 552

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
             VHGNREIA RSAK++L+LWPNDPA YVLLS+V      WDDA D+R LM +RG+RKKP
Sbjct: 553 SLVHGNREIAARSAKKLLELWPNDPATYVLLSSVLTVDGNWDDAADLRKLMCDRGLRKKP 612

Query: 302 GYSWV 306
           GYSW 
Sbjct: 613 GYSWT 617



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 93/167 (55%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + ++  +  R  ++WN++I G+  +   + A++ F +M +A I++  F++
Sbjct: 114 YAKCGEISSARVLFDQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAAINVSAFSV 173

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S +     +   + G Q+H LI K G   NV V   LV MY+ CG ++D+  VF  M  
Sbjct: 174 SSCLAGCSQLEAREVGTQVHGLILKTGLGYNVVVGTSLVDMYSKCGDVDDSRLVFDHMVN 233

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           R++++W S++ G +      EA+ L ++M   +++P+  T+  +LS+
Sbjct: 234 RNVITWTSMVTGYSQIEKPDEAMALVKEMVLQDLRPNCVTYNSLLSS 280



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 126/270 (46%), Gaps = 6/270 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D + V+  +  RN I+W +++ G+  +   ++A+    EM    +  +  T 
Sbjct: 215 YSKCGDVDDSRLVFDHMVNRNVITWTSMVTGYSQIEKPDEAMALVKEMVLQDLRPNCVTY 274

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC-GAINDANKVFSSMD 124
            S++ +           Q+H  I ++G +SNV++   LV +Y+ C  ++ D  KV S + 
Sbjct: 275 NSLLSSFSGPDCLSYCLQVHCCIIQLGLESNVYIAATLVTVYSKCSSSLEDFKKVCSVVM 334

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             D ++WN+++ G +  G   EA++ F +M++  I  D  T   V+ A  ++ F+++G  
Sbjct: 335 TCDNIAWNAVIAGYSKLGRHEEALRCFHEMKQAGIDIDSYTLTSVVGAIGNSSFLEEGKA 394

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
              L+     +     ++   +V +  R G + +++     M  +   S + ALL+A   
Sbjct: 395 MHALIHRTGYISHLNVQN--GLVSMYARCGAIGDSKRVFWFMEEHDVIS-WNALLTAFAH 451

Query: 245 HGNREIAVR--SAKRVLDLWPNDPAIYVLL 272
           HG    AV      R  ++ PN      +L
Sbjct: 452 HGYGREAVELFEQMRKTEIKPNSSTFLAVL 481



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 54  RQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113
           R   +   YF +  IV        F  G Q H+ I K+G+ SNV++ + +V MYA CG I
Sbjct: 62  RHGSLSNPYF-LNKIVSFCAKSGSFHLGIQAHSTILKLGFISNVYICSAVVDMYAKCGEI 120

Query: 114 NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           + A  +F  M +R +V+WNSL+ G       + A++LF +M K  I     +    L+ C
Sbjct: 121 SSARVLFDQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAAINVSAFSVSSCLAGC 180

Query: 174 CHAGFIDKGLQ 184
                 + G Q
Sbjct: 181 SQLEAREVGTQ 191


>gi|449450916|ref|XP_004143208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/305 (57%), Positives = 228/305 (74%), Gaps = 1/305 (0%)

Query: 3   ILTYSRCDSSL-DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           +  YS C  SL D++ V S++R  +QISWNA+IAGF NLG GE+AL+CF +MR+   D+D
Sbjct: 312 VTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFIQMRREKFDVD 371

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           +FT TSI  AIG+ S  +EGKQ+H L++K GY  N+ VQN LV MYA  GAI D+  VFS
Sbjct: 372 FFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARSGAIRDSKMVFS 431

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M+E DL+SWNSLL GCA+HG   EA+ LFE+M++T IKPD T+FL VL+AC H G +DK
Sbjct: 432 MMNEHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACSHVGLLDK 491

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           GL+YF LMRN   +EPP+ EHY  +V L GRAG L EAE+FI S+   PG S+YKALLSA
Sbjct: 492 GLEYFKLMRNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFIESIPIEPGISIYKALLSA 551

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C +HGN++IA+R+AK++L+L+P DPA Y++LSN       WDDA  IR LM NRG++K+P
Sbjct: 552 CLIHGNKDIAIRTAKKLLELYPYDPATYIMLSNALGRDGYWDDAASIRRLMSNRGVKKEP 611

Query: 302 GYSWV 306
           G+SW+
Sbjct: 612 GFSWM 616



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 139/299 (46%), Gaps = 7/299 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C +  D + V+  +  +N  +W ++I+G+       +A+    EM    +  +  T 
Sbjct: 214 YSKCCNLQDSRRVFDIMLNKNVFTWTSMISGYARNQLPHEAMILMREMLHLNLKPNGMTY 273

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA-ICGAINDANKVFSSMD 124
            S++ +      F + KQ+H  I   GY+SN ++   LV  Y+  CG++ D  KV S++ 
Sbjct: 274 NSLLSSFSCPRHFDKCKQIHCRIITEGYESNNYIAVTLVTAYSECCGSLEDYRKVCSNIR 333

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             D +SWN+++ G  + G   EA++ F QM++ +   D  TF  +  A      +++G Q
Sbjct: 334 MSDQISWNAVIAGFTNLGIGEEALECFIQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQ 393

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
              L+           ++   +V +  R+G + +++   + M+ +   S + +LLS C  
Sbjct: 394 IHGLVYKTGYTLNLSVQN--GLVSMYARSGAIRDSKMVFSMMNEHDLIS-WNSLLSGCAY 450

Query: 245 HGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           HG  E A+      R   + P++ +   +L+  S      D   +   LM N  + + P
Sbjct: 451 HGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACSHV-GLLDKGLEYFKLMRNSELVEPP 508



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 2/180 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D   V+  +   + ++WN+++ G+   G    A+  F EM + GI+   F++
Sbjct: 113 YGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSL 172

Query: 66  TS-IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +  +VG   +  G   G Q+HA+  K+ + SNV V   L+ MY+ C  + D+ +VF  M 
Sbjct: 173 SGGLVGCSQLQKG-DLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIML 231

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +++ +W S++ G A +    EA+ L  +M    +KP+G T+  +LS+       DK  Q
Sbjct: 232 NKNVFTWTSMISGYARNQLPHEAMILMREMLHLNLKPNGMTYNSLLSSFSCPRHFDKCKQ 291



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 49/81 (60%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G Q+H+ I K+G+  N ++   LV MY  C +I+DA+KVF  M    +V+WNSL+ G   
Sbjct: 87  GIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQ 146

Query: 141 HGYSREAVQLFEQMQKTEIKP 161
            GY   AV LF +M K  I+P
Sbjct: 147 AGYPLMAVSLFLEMLKKGIEP 167


>gi|449496714|ref|XP_004160205.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/305 (57%), Positives = 228/305 (74%), Gaps = 1/305 (0%)

Query: 3   ILTYSRCDSSL-DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           +  YS C  SL D++ V S++R  +QISWNA+IAGF NLG GE+AL+CF +MR+   D+D
Sbjct: 312 VTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFIQMRREKFDVD 371

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           +FT TSI  AIG+ S  +EGKQ+H L++K GY  N+ VQN LV MYA  GAI D+  VFS
Sbjct: 372 FFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARSGAIRDSKMVFS 431

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M+E DL+SWNSLL GCA+HG   EA+ LFE+M++T IKPD T+FL VL+AC H G +DK
Sbjct: 432 MMNEHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACSHVGLLDK 491

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           GL+YF LMRN   +EPP+ EHY  +V L GRAG L EAE+FI S+   PG S+YKALLSA
Sbjct: 492 GLEYFKLMRNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFIESIPIEPGISIYKALLSA 551

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C +HGN++IA+R+AK++L+L+P DPA Y++LSN       WDDA  IR LM NRG++K+P
Sbjct: 552 CLIHGNKDIAIRTAKKLLELYPYDPATYIMLSNALGRDGYWDDAASIRRLMSNRGVKKEP 611

Query: 302 GYSWV 306
           G+SW+
Sbjct: 612 GFSWM 616



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 140/299 (46%), Gaps = 7/299 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C +  D + V+  +  +N  +W ++I+G+       +A+    EM    ++ +  T 
Sbjct: 214 YSKCCNLQDSRRVFDIMLNKNVFTWTSMISGYARNQLPHEAMXLMREMLHLNLEPNGMTY 273

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA-ICGAINDANKVFSSMD 124
            S++ +      F + KQ+H  I   GY+SN ++   LV  Y+  CG++ D  KV S++ 
Sbjct: 274 NSLLSSFSCPRHFDKCKQIHCRIITEGYESNNYIAVTLVTAYSECCGSLEDYRKVCSNIR 333

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             D +SWN+++ G  + G   EA++ F QM++ +   D  TF  +  A      +++G Q
Sbjct: 334 MSDQISWNAVIAGFTNLGIGEEALECFIQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQ 393

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
              L+           ++   +V +  R+G + +++   + M+ +   S + +LLS C  
Sbjct: 394 IHGLVYKTGYTLNLSVQN--GLVSMYARSGAIRDSKMVFSMMNEHDLIS-WNSLLSGCAY 450

Query: 245 HGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           HG  E A+      R   + P++ +   +L+  S      D   +   LM N  + + P
Sbjct: 451 HGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACSHV-GLLDKGLEYFKLMRNSELVEPP 508



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 2/180 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D   V+  +   + ++WN+++ G+   G    A+  F EM + GI+   F++
Sbjct: 113 YGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSL 172

Query: 66  TS-IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +  +VG   +  G   G Q+HA+  K+ + SNV V   L+ MY+ C  + D+ +VF  M 
Sbjct: 173 SGGLVGCSQLQKG-DLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIML 231

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +++ +W S++ G A +    EA+ L  +M    ++P+G T+  +LS+       DK  Q
Sbjct: 232 NKNVFTWTSMISGYARNQLPHEAMXLMREMLHLNLEPNGMTYNSLLSSFSCPRHFDKCKQ 291



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 49/81 (60%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G Q+H+ I K+G+  N ++   LV MY  C +I+DA+KVF  M    +V+WNSL+ G   
Sbjct: 87  GIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQ 146

Query: 141 HGYSREAVQLFEQMQKTEIKP 161
            GY   AV LF +M K  I+P
Sbjct: 147 AGYPLMAVSLFLEMLKKGIEP 167


>gi|57899214|dbj|BAD87363.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222619954|gb|EEE56086.1| hypothetical protein OsJ_04925 [Oryza sativa Japonica Group]
          Length = 566

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 154/304 (50%), Positives = 210/304 (69%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+C    DF  V  SV  ++Q+S+N++I+G   LG G++A + F EMR+ G D+D 
Sbjct: 256 VTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDV 315

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  SI+ AIG  S   EG+Q+H LI KIGYDS V VQN L+ MYA  GAI ++N VF S
Sbjct: 316 FTFASILKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFIS 375

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+  +LVSWNSL+ GCA HG+ +E V++FEQM++  ++PD  TFL VL+AC H G +DKG
Sbjct: 376 MEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKG 435

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+YF LM++   L   R +HY  +V LLGRAG+LNEAE  IN M   PG SVY+ALLSAC
Sbjct: 436 LEYFNLMKDKGYLVGARTKHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSAC 495

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           Q+HGN EIA+R +KR+++L P+D +++V LSN       W +A +IR  M  +GI K+P 
Sbjct: 496 QIHGNLEIAIRVSKRLMELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGKGIVKEPS 555

Query: 303 YSWV 306
           +S +
Sbjct: 556 WSRI 559



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 134/296 (45%), Gaps = 12/296 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      Q V+  +  +N  ++ A++ GF        A+    EM ++G+  +  T 
Sbjct: 158 YAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTY 217

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ +         GKQ+H  + K G + + FV + LV MY+ CG   D  KV  S+  
Sbjct: 218 SSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSC 277

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D VS+NS++ G +  G  +EA Q F +M++     D  TF  +L A   +  + +G Q 
Sbjct: 278 QDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQV 337

Query: 186 FYLMRN---DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             L+     D+ ++        +++ +  R G + E+     SM   P    + +L+S C
Sbjct: 338 HTLILKIGYDSVVDV-----QNSLISMYARHGAIGESNGVFISM-EAPNLVSWNSLMSGC 391

Query: 243 QVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
             HG+ +  V      R L + P+      +L+  S      D   +   LM ++G
Sbjct: 392 AQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSH-VGLVDKGLEYFNLMKDKG 446



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 92/179 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R     + Q+++  +  R  ++WN +I G     + + A+  F+ M +AG+     ++
Sbjct: 57  YCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMVRAGVSPTASSV 116

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   +     G  +H++  + G+ ++V V   LV MYA C  +  A +VF  M+E
Sbjct: 117 SSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLGAAQQVFGEMEE 176

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++ ++ +L+ G        +AV L  +M+++ + P+  T+  +LS+      ID G Q
Sbjct: 177 KNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQ 235



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 83  QMHALIFKIGYD-SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           Q HA   K+G+  SN F    L+  Y     + +A  +F  M  R  V+WN+L+ G A  
Sbjct: 32  QCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQS 91

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
                AV  F +M +  + P  ++   VL AC
Sbjct: 92  TAPDLAVAAFARMVRAGVSPTASSVSSVLVAC 123


>gi|218189824|gb|EEC72251.1| hypothetical protein OsI_05387 [Oryza sativa Indica Group]
          Length = 566

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 154/304 (50%), Positives = 210/304 (69%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+C    DF  V  SV  ++Q+S+N++I+G   LG G++A + F EMR+ G D+D 
Sbjct: 256 VTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDV 315

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  SI+ AIG  S   EG+Q+H LI KIGYDS V VQN L+ MYA  GAI ++N VF S
Sbjct: 316 FTFASILKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFIS 375

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+  +LVSWNSL+ GCA HG+ +E V++FEQM++  ++PD  TFL VL+AC H G +DKG
Sbjct: 376 MEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKG 435

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+YF LM++   L   R +HY  +V LLGRAG+LNEAE  IN M   PG SVY+ALLSAC
Sbjct: 436 LEYFNLMKDKGYLVGARTKHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSAC 495

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           Q+HGN EIA+R +KR+++L P+D +++V LSN       W +A +IR  M  +GI K+P 
Sbjct: 496 QIHGNLEIAIRVSKRLMELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGKGIVKEPS 555

Query: 303 YSWV 306
           +S +
Sbjct: 556 WSRI 559



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 134/296 (45%), Gaps = 12/296 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      Q V+  +  +N  ++ A++ GF        A+    EM ++G+  +  T 
Sbjct: 158 YAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTY 217

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ +         GKQ+H  + K G + + FV + LV MY+ CG   D  KV  S+  
Sbjct: 218 SSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSC 277

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D VS+NS++ G +  G  +EA Q F +M++     D  TF  +L A   +  + +G Q 
Sbjct: 278 QDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQV 337

Query: 186 FYLMRN---DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             L+     D+ ++        +++ +  R G + E+     SM   P    + +L+S C
Sbjct: 338 HTLILKIGYDSVVDV-----QNSLISMYARHGAIGESNGVFISM-EAPNLVSWNSLMSGC 391

Query: 243 QVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
             HG+ +  V      R L + P+      +L+  S      D   +   LM ++G
Sbjct: 392 AQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSH-VGLVDKGLEYFNLMKDKG 446



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 92/179 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R     + Q+++  +  R  ++WN +I G     + + A+  F+ M +AG+     ++
Sbjct: 57  YCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMVRAGVSPTASSV 116

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   +     G  +H++  + G+ ++V V   LV MYA C  +  A +VF  M+E
Sbjct: 117 SSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLGAAQQVFGEMEE 176

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++ ++ +L+ G        +AV L  +M+++ + P+  T+  +LS+      ID G Q
Sbjct: 177 KNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQ 235



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 83  QMHALIFKIGYD-SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           Q HA   K+G+  SN F    L+  Y     + +A  +F  M  R  V+WN+L+ G A  
Sbjct: 32  QCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQS 91

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
                AV  F +M +  + P  ++   VL AC
Sbjct: 92  TAPDLAVAAFARMVRAGVSPTASSVSSVLVAC 123


>gi|218199277|gb|EEC81704.1| hypothetical protein OsI_25308 [Oryza sativa Indica Group]
          Length = 749

 Score =  309 bits (792), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 148/290 (51%), Positives = 200/290 (68%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+C    DF  V  SV  ++Q+S+N++I+G   LG G++A + F EMR+ G D+D 
Sbjct: 303 VTMYSKCGILEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDV 362

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++ AIG  S   EG+Q+H LI KIGYDS V VQN L+ MYA  GAI ++N VF S
Sbjct: 363 FTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFIS 422

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+  +LVSWNSL+ GCA HG+ +E V++FEQM++  ++PD  TFL VL+AC H G +DKG
Sbjct: 423 MEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKG 482

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+YF LM++   L   R EHY  +V LLGRAG+LNEAE  IN M   PG SVY+ALLSAC
Sbjct: 483 LEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSAC 542

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLM 292
           Q+HGN EI +R +KR+++L P+D +++V LSN       W +A +IR  M
Sbjct: 543 QIHGNLEIVIRVSKRLIELNPHDSSVHVQLSNAFAGDGRWGNAAEIREAM 592



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 136/296 (45%), Gaps = 12/296 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      Q V+  +  +N  ++ A++AGF        A+    EM ++G+  +  T 
Sbjct: 205 YAKCHHLGAAQQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTY 264

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ +         GKQ+H  + K G + + FV + LV MY+ CG + D  KV  S+  
Sbjct: 265 SSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILEDFVKVQMSVSC 324

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D VS+NS++ G +  G  +EA Q F +M++     D  TF  VL A   +  + +G Q 
Sbjct: 325 QDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQV 384

Query: 186 FYLMRN---DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             L+     D+ ++        +++ +  R G + E+     SM   P    + +L+S C
Sbjct: 385 HTLILKIGYDSVVDV-----QNSLISMYARHGAIGESNGVFISM-EAPNLVSWNSLMSGC 438

Query: 243 QVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
             HG+ +  V      R L + P+      +L+  S      D   +   LM ++G
Sbjct: 439 AQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSH-VGLVDKGLEYFNLMKDKG 493



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 90/179 (50%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R     + Q+++  +  R  ++WN +I G     +   A+  F+ M +AG+     ++
Sbjct: 104 YCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSV 163

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   +     G  +H++    G+ ++V V   LV MYA C  +  A +VF  M+E
Sbjct: 164 SSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQVFREMEE 223

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++ ++ +L+ G        +A+ L  +M+++ + P+  T+  +LS+      ID G Q
Sbjct: 224 KNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQ 282



 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 90  KIGY-DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
           K+G+  SN+F    L+  Y     + +A  +F  M  R  V+WN+L+ G A       AV
Sbjct: 86  KLGFLASNLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAV 145

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSAC 173
             F +M +  + P  ++   VL AC
Sbjct: 146 AAFARMARAGVSPTASSVSSVLVAC 170


>gi|297725471|ref|NP_001175099.1| Os07g0203900 [Oryza sativa Japonica Group]
 gi|255677594|dbj|BAH93827.1| Os07g0203900 [Oryza sativa Japonica Group]
          Length = 721

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 147/290 (50%), Positives = 200/290 (68%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+C    +F  V  SV  ++Q+S+N++I+G   LG G++A + F EMR+ G D+D 
Sbjct: 258 VTMYSKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDV 317

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++ AIG  S   EG+Q+H LI KIGYDS V VQN L+ MYA  GAI ++N VF S
Sbjct: 318 FTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFIS 377

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+  +LVSWNSL+ GCA HG+ +E V++FEQM++  ++PD  TFL VL+AC H G +DKG
Sbjct: 378 MEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKG 437

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+YF LM++   L   R EHY  +V LLGRAG+LNEAE  IN M   PG SVY+ALLSAC
Sbjct: 438 LEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSAC 497

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLM 292
           Q+HGN EI +R +KR+++L P+D +++V LSN       W +A +IR  M
Sbjct: 498 QIHGNLEIVIRVSKRLIELNPHDSSVHVQLSNAFAGDGRWGNAAEIREAM 547



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 136/296 (45%), Gaps = 12/296 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      Q V+  +  +N  ++ A++AGF        A+    EM ++G+  +  T 
Sbjct: 160 YAKCHHLGAAQQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTY 219

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ +         GKQ+H  + K G + + FV + LV MY+ CG + +  KV  S+  
Sbjct: 220 SSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMSVSC 279

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D VS+NS++ G +  G  +EA Q F +M++     D  TF  VL A   +  + +G Q 
Sbjct: 280 QDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQV 339

Query: 186 FYLMRN---DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             L+     D+ ++        +++ +  R G + E+     SM   P    + +L+S C
Sbjct: 340 HTLILKIGYDSVVDV-----QNSLISMYARHGAIGESNGVFISM-EAPNLVSWNSLMSGC 393

Query: 243 QVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
             HG+ +  V      R L + P+      +L+  S      D   +   LM ++G
Sbjct: 394 AQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSH-VGLVDKGLEYFNLMKDKG 448



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 90/179 (50%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R     + Q+++  +  R  ++WN +I G     +   A+  F+ M +AG+     ++
Sbjct: 59  YCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSV 118

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   +     G  +H++    G+ ++V V   LV MYA C  +  A +VF  M+E
Sbjct: 119 SSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQVFREMEE 178

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++ ++ +L+ G        +A+ L  +M+++ + P+  T+  +LS+      ID G Q
Sbjct: 179 KNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQ 237



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 90  KIGY-DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
           K+G+  SN+F    L+  Y     + +A  +F  M  R  V+WN+L+ G A       AV
Sbjct: 41  KLGFLASNLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAV 100

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSAC 173
             F +M +  + P  ++   VL AC
Sbjct: 101 AAFARMARAGVSPTASSVSSVLVAC 125


>gi|33146592|dbj|BAC79788.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 749

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 147/290 (50%), Positives = 200/290 (68%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+C    +F  V  SV  ++Q+S+N++I+G   LG G++A + F EMR+ G D+D 
Sbjct: 303 VTMYSKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDV 362

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++ AIG  S   EG+Q+H LI KIGYDS V VQN L+ MYA  GAI ++N VF S
Sbjct: 363 FTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFIS 422

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+  +LVSWNSL+ GCA HG+ +E V++FEQM++  ++PD  TFL VL+AC H G +DKG
Sbjct: 423 MEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKG 482

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+YF LM++   L   R EHY  +V LLGRAG+LNEAE  IN M   PG SVY+ALLSAC
Sbjct: 483 LEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSAC 542

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLM 292
           Q+HGN EI +R +KR+++L P+D +++V LSN       W +A +IR  M
Sbjct: 543 QIHGNLEIVIRVSKRLIELNPHDSSVHVQLSNAFAGDGRWGNAAEIREAM 592



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 136/296 (45%), Gaps = 12/296 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      Q V+  +  +N  ++ A++AGF        A+    EM ++G+  +  T 
Sbjct: 205 YAKCHHLGAAQQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTY 264

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ +         GKQ+H  + K G + + FV + LV MY+ CG + +  KV  S+  
Sbjct: 265 SSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMSVSC 324

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D VS+NS++ G +  G  +EA Q F +M++     D  TF  VL A   +  + +G Q 
Sbjct: 325 QDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQV 384

Query: 186 FYLMRN---DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             L+     D+ ++        +++ +  R G + E+     SM   P    + +L+S C
Sbjct: 385 HTLILKIGYDSVVDV-----QNSLISMYARHGAIGESNGVFISM-EAPNLVSWNSLMSGC 438

Query: 243 QVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
             HG+ +  V      R L + P+      +L+  S      D   +   LM ++G
Sbjct: 439 AQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSH-VGLVDKGLEYFNLMKDKG 493



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 90/179 (50%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R     + Q+++  +  R  ++WN +I G     +   A+  F+ M +AG+     ++
Sbjct: 104 YCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSV 163

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   +     G  +H++    G+ ++V V   LV MYA C  +  A +VF  M+E
Sbjct: 164 SSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQVFREMEE 223

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++ ++ +L+ G        +A+ L  +M+++ + P+  T+  +LS+      ID G Q
Sbjct: 224 KNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQ 282



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 90  KIGY-DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
           K+G+  SN+F    L+  Y     + +A  +F  M  R  V+WN+L+ G A       AV
Sbjct: 86  KLGFLASNLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAV 145

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSAC 173
             F +M +  + P  ++   VL AC
Sbjct: 146 AAFARMARAGVSPTASSVSSVLVAC 170


>gi|222636636|gb|EEE66768.1| hypothetical protein OsJ_23489 [Oryza sativa Japonica Group]
          Length = 691

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/290 (50%), Positives = 200/290 (68%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+C    +F  V  SV  ++Q+S+N++I+G   LG G++A + F EMR+ G D+D 
Sbjct: 228 VTMYSKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDV 287

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++ AIG  S   EG+Q+H LI KIGYDS V VQN L+ MYA  GAI ++N VF S
Sbjct: 288 FTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFIS 347

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+  +LVSWNSL+ GCA HG+ +E V++FEQM++  ++PD  TFL VL+AC H G +DKG
Sbjct: 348 MEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKG 407

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+YF LM++   L   R EHY  +V LLGRAG+LNEAE  IN M   PG SVY+ALLSAC
Sbjct: 408 LEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSAC 467

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLM 292
           Q+HGN EI +R +KR+++L P+D +++V LSN       W +A +IR  M
Sbjct: 468 QIHGNLEIVIRVSKRLIELNPHDSSVHVQLSNAFAGDGRWGNAAEIREAM 517



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 118/256 (46%), Gaps = 12/256 (4%)

Query: 46  ALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105
           A+    EM ++G+  +  T +S++ +         GKQ+H  + K G + + FV + LV 
Sbjct: 170 AMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVT 229

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
           MY+ CG + +  KV  S+  +D VS+NS++ G +  G  +EA Q F +M++     D  T
Sbjct: 230 MYSKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFT 289

Query: 166 FLVVLSACCHAGFIDKGLQYFYLMRN---DASLEPPRAEHYTAIVGLLGRAGFLNEAESF 222
           F  VL A   +  + +G Q   L+     D+ ++        +++ +  R G + E+   
Sbjct: 290 FASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDV-----QNSLISMYARHGAIGESNGV 344

Query: 223 INSMSRNPGPSVYKALLSACQVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATD 280
             SM   P    + +L+S C  HG+ +  V      R L + P+      +L+  S    
Sbjct: 345 FISM-EAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSH-VG 402

Query: 281 CWDDAGDIRTLMYNRG 296
             D   +   LM ++G
Sbjct: 403 LVDKGLEYFNLMKDKG 418



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 90  KIGY-DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
           K+G+  SN+F    L+  Y     + +A  +F  M  R  V+WN+L+ G A       AV
Sbjct: 41  KLGFLASNLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGFAV 100

Query: 149 QLFEQMQKTEIKPDGTT 165
             F +M +  + P G  
Sbjct: 101 AAFARMARAGVSPTGVV 117


>gi|357131803|ref|XP_003567523.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 577

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 150/304 (49%), Positives = 207/304 (68%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+C S  DF+ V   V  ++Q+S+N++I+G   LG G +A + F +MR+ G D D 
Sbjct: 267 VTMYSKCGSLEDFRRVQVDVSCQDQVSFNSVISGLSCLGRGNEAFQHFVQMRRQGTDTDV 326

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++ AIG  S   EG Q+HAL+ K GYDS+V VQN L+ MYA  GAI ++  VF+ 
Sbjct: 327 FTFASMLKAIGSSSSLLEGSQVHALVSKTGYDSDVNVQNGLISMYARRGAIGESRDVFAF 386

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++  DLVSWNSLL G AHHGY +E V++FEQM++  ++PD TTFL+VL+AC HAG +DKG
Sbjct: 387 VETPDLVSWNSLLSGYAHHGYGKEVVEVFEQMRRLNVQPDHTTFLLVLTACSHAGLVDKG 446

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+YF LM+    L     EHY  +V LLGRAG L EAES I+ M   PG SVY+ALLSAC
Sbjct: 447 LEYFNLMKASGFLAGAWLEHYACMVDLLGRAGHLQEAESLISDMPTEPGVSVYRALLSAC 506

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           Q+HGN EIA+R+++R+++L+P+D + +V LS        W +A ++R  M  +GI K P 
Sbjct: 507 QIHGNLEIAIRTSRRLMELYPHDSSAHVQLSKAFAGDGHWGNAAEVREAMTGKGIAKIPA 566

Query: 303 YSWV 306
           +S V
Sbjct: 567 WSCV 570



 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 122/275 (44%), Gaps = 5/275 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + V      RN  ++ A++ G         A+    EM ++G+  +  T 
Sbjct: 169 YAKCHDVSAARRVLGETEDRNVATFTALLGGLAAARRSHDAMLVVGEMERSGVAPNMMTY 228

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A         G+Q H  + K G ++N +V + LV MY+ CG++ D  +V   +  
Sbjct: 229 SSLLSAFTGPDDLDHGRQAHCAVLKKGLENNRYVLSALVTMYSKCGSLEDFRRVQVDVSC 288

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D VS+NS++ G +  G   EA Q F QM++     D  TF  +L A   +  + +G Q 
Sbjct: 289 QDQVSFNSVISGLSCLGRGNEAFQHFVQMRRQGTDTDVFTFASMLKAIGSSSSLLEGSQV 348

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             L+           ++   ++ +  R G + E+   + +    P    + +LLS    H
Sbjct: 349 HALVSKTGYDSDVNVQN--GLISMYARRGAIGESRD-VFAFVETPDLVSWNSLLSGYAHH 405

Query: 246 --GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
             G   + V    R L++ P+     ++L+  S A
Sbjct: 406 GYGKEVVEVFEQMRRLNVQPDHTTFLLVLTACSHA 440



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 94/190 (49%), Gaps = 15/190 (7%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQ-ISWNAIIAGFCNLGSGEQAL--KCFSEMRQAGIDIDY 62
           Y R     D Q ++  +  +   ++W+A++ G     SG+ AL  + F+ M +AG+    
Sbjct: 61  YCRSHRPGDAQRLFDEMPDKTGGVTWSALVHGHARW-SGDPALSLRAFARMARAGVGP-- 117

Query: 63  FTITSIVGAIGVISGFKE------GKQMHALIFKIGY--DSNVFVQNRLVFMYAICGAIN 114
            T +++ GA+   +  ++      G  +HA   K G     +V V   LV MYA C  ++
Sbjct: 118 -TASAVSGALVACARMEDDAGVIVGAVLHAAGIKCGAACGRSVVVGTALVDMYAKCHDVS 176

Query: 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
            A +V    ++R++ ++ +LL G A    S +A+ +  +M+++ + P+  T+  +LSA  
Sbjct: 177 AARRVLGETEDRNVATFTALLGGLAAARRSHDAMLVVGEMERSGVAPNMMTYSSLLSAFT 236

Query: 175 HAGFIDKGLQ 184
               +D G Q
Sbjct: 237 GPDDLDHGRQ 246


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/301 (42%), Positives = 187/301 (62%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC  + D    +  +  ++ ISWNA+I+GF   G  E+AL+ FS+M QAG++ + FT 
Sbjct: 561 YARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTF 620

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S V A    +  K+GKQ+HA++ K GYDS     N L+ +Y+ CG+I DA + F  M E
Sbjct: 621 GSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPE 680

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++VSWN+++ G + HGY  EAV LFE+M++  + P+  TF+ VLSAC H G +++GL Y
Sbjct: 681 KNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSY 740

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  +  L  P+ EHY  +V LLGRA  L  A  FI  M   P   +++ LLSAC VH
Sbjct: 741 FRSMSKEHGL-VPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVH 799

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N EI   +A+ +L+L P D A YVLLSN+   +  WD     R +M +RG++K+PG SW
Sbjct: 800 KNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSW 859

Query: 306 V 306
           +
Sbjct: 860 I 860



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 133/290 (45%), Gaps = 5/290 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + +   +R  + +SW A+IAG+       +ALK F EM   GI  D    +S + A   I
Sbjct: 470 RGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGI 529

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               +G+Q+HA  +  GY  ++ + N LV +YA CG   DA   F  +D +D +SWN+L+
Sbjct: 530 QALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALI 589

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A  G+  EA+Q+F QM +  ++ +  TF   +SA  +   I +G Q   +M      
Sbjct: 590 SGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGY- 648

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH--GNREIAVR 253
                E    ++ L  + G + +A+     M      S + A+++    H  G+  +++ 
Sbjct: 649 -DSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVS-WNAMITGYSQHGYGSEAVSLF 706

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
              + L L PN      +LS  S      +     R++    G+  KP +
Sbjct: 707 EEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEH 756



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 95/167 (56%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  ++ +SW A+I+G    G  ++A+  F +M ++ +    +  +S++ A   I  
Sbjct: 169 VFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIEL 228

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           FK G+Q+H  I K G  S  FV N LV +Y+  G +  A ++FS M  RD +S+NSL+ G
Sbjct: 229 FKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISG 288

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            A  G+S  A+QLFE+MQ   +KPD  T   +LSAC   G   KG Q
Sbjct: 289 LAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQ 335



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 99/182 (54%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YSR  + +  + ++S +  R++IS+N++I+G    G  ++AL+ F +M+   +  D 
Sbjct: 255 VTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDC 314

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ A   +    +GKQ+H+ + K+G  S++ ++  L+ +Y  C  I  A++ F +
Sbjct: 315 VTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLT 374

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            +  ++V WN +L+     G   E+  +F QMQ   + P+  T+  +L  C   G +D G
Sbjct: 375 TETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLG 434

Query: 183 LQ 184
            Q
Sbjct: 435 EQ 436



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 90/179 (50%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C         + +  T N + WN ++  +  LG+  ++   F +M+  G+  + +T 
Sbjct: 359 YVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTY 418

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+     +     G+Q+H  + K G+  NV+V + L+ MYA  G ++ A  +   + E
Sbjct: 419 PSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLRE 478

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            D+VSW +++ G   H    EA++LF++M+   I+ D   F   +SAC     +++G Q
Sbjct: 479 EDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQ 537



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 130/274 (47%), Gaps = 11/274 (4%)

Query: 4   LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           L +   D+++    ++  + + N   WN +I+G        Q L  FS M    +  D  
Sbjct: 56  LAHGEVDNAI---KLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDES 112

Query: 64  TITSIVGAI-GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           T  S++ A  G  + F+  +Q+HA I   G+ S+  V N L+ +Y+  G ++ A  VF  
Sbjct: 113 TFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFER 172

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  +D VSW +++ G + +G   EA+ LF QM K+ + P    F  VLSAC        G
Sbjct: 173 LFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLG 232

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            Q + ++++   S E        A+V L  R G L  AE   + M R    S Y +L+S 
Sbjct: 233 EQLHGFIVKWGLSSETFVC---NALVTLYSRWGNLIAAEQIFSKMHRRDRIS-YNSLISG 288

Query: 242 CQVHGNREIAVRSAKRV-LD-LWPNDPAIYVLLS 273
               G  + A++  +++ LD + P+   +  LLS
Sbjct: 289 LAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLS 322



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 33/196 (16%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           + K++HA IFK G+D    + +RL+ +Y   G +++A K+F  +   ++  WN ++ G  
Sbjct: 28  DAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLL 87

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC------------HAGFIDKGLQYFY 187
               + + + LF  M    + PD +TF  VL AC             HA  I  G     
Sbjct: 88  AKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSP 147

Query: 188 LMRND-------------ASLEPPR-----AEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
           L+ N              A L   R     +  + A++  L + G  +EA      M ++
Sbjct: 148 LVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKS 207

Query: 230 ---PGPSVYKALLSAC 242
              P P V+ ++LSAC
Sbjct: 208 AVIPTPYVFSSVLSAC 223



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 16/177 (9%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C S  D +  +  +  +N +SWNA+I G+   G G +A+  F EM+Q G+  ++
Sbjct: 659 ITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNH 718

Query: 63  FTITSIVGA---IGVI----SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
            T   ++ A   +G++    S F+   + H L+ K   +  V V + L     +C     
Sbjct: 719 VTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKP--EHYVCVVDLLGRAALLCC---- 772

Query: 116 ANKVFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           A +    M  E D + W +LL  C  H      +  F      E++P+ +   V+LS
Sbjct: 773 AREFIEEMPIEPDAMIWRTLLSACTVH--KNIEIGEFAARHLLELEPEDSATYVLLS 827


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 129/301 (42%), Positives = 185/301 (61%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC    +    +  +  ++ ISWN +I+GF   G  E ALK F++M +A ++  +FT 
Sbjct: 561 YARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTF 620

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S V A   I+  K+GKQ+HA+I K G+DS++ V N L+  YA CG+I DA + F  M E
Sbjct: 621 GSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPE 680

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++ VSWN+++ G + HGY  EAV LFE+M++    P+  TF+ VLSAC H G + KGL Y
Sbjct: 681 KNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGY 740

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  +  L P  A HY  +V L+ RAGFL+ A  FI  M   P  ++++ LLSAC VH
Sbjct: 741 FESMSKEHGLVPKPA-HYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVH 799

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +A+ +L+L P D A YVLLSN+   +  WD     R +M NRG++K+PG SW
Sbjct: 800 KNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSW 859

Query: 306 V 306
           +
Sbjct: 860 I 860



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 98/169 (57%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+ ++ T++ +SW A+I+GF   G  E+A+  F EM  AGI    +  +S++     I
Sbjct: 167 RKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKI 226

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             F  G+Q+HAL+FK G     +V N LV +Y+       A KVFS M  +D VS+NSL+
Sbjct: 227 KLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLI 286

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G A  G+S  A++LF +M++  +KPD  T   +LSAC   G + KG Q
Sbjct: 287 SGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQ 335



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 127/281 (45%), Gaps = 11/281 (3%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SW A+I+G+       +ALK F EM   GI  D    +S + A   I    +G+Q+HA 
Sbjct: 482 VSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQ 541

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
            +  GY  ++ + N LV +YA CG I +A   F  +D +D +SWN L+ G A  GY  +A
Sbjct: 542 SYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDA 601

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN---DASLEPPRAEHYT 204
           +++F QM + +++    TF   +SA  +   I +G Q   ++     D+ +E        
Sbjct: 602 LKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVS-----N 656

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH--GNREIAVRSAKRVLDLW 262
           A++    + G + +A      M      S + A+++    H  GN  + +    + +   
Sbjct: 657 ALITFYAKCGSIEDARREFCEMPEKNDVS-WNAMITGYSQHGYGNEAVNLFEKMKQVGEM 715

Query: 263 PNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
           PN      +LS  S         G   ++    G+  KP +
Sbjct: 716 PNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAH 756



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 12/219 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C        ++ + +T N + WN ++  F  L +  ++ + F +M+  G+  + FT 
Sbjct: 359 YVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTY 418

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+     +     G+Q+H  + K G+  NV+V + L+ MYA  G ++ A+ +  ++ E
Sbjct: 419 PSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTE 478

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            D+VSW +L+ G A H    EA++ F++M    I+ D   F   +SAC     +++G Q 
Sbjct: 479 DDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQI 538

Query: 185 ----YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
               Y      D S+         A+V L  R G + EA
Sbjct: 539 HAQSYVSGYSEDLSIG-------NALVSLYARCGRIKEA 570



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 100/182 (54%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YSR  + +  + V+S +++++++S+N++I+G    G  + AL+ F++M++  +  D 
Sbjct: 255 VTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDC 314

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ A        +G+Q+H+ + K G  S++ V+  L+ +Y  C  I  A+++F +
Sbjct: 315 VTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLT 374

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
               ++V WN +L+         E+ ++F QMQ   + P+  T+  +L  C   G +D G
Sbjct: 375 AQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLG 434

Query: 183 LQ 184
            Q
Sbjct: 435 EQ 436



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 110/263 (41%), Gaps = 33/263 (12%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI-GVI 75
            V+  +  R+  SW+ II+GF       + L  FS M +  +     +  S++ A  G  
Sbjct: 66  KVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHR 125

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
            G +  +Q+HA I   G   +  + N L+ +YA  G I  A KVF ++  +D VSW +++
Sbjct: 126 IGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMI 185

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL------- 188
            G + +GY  EA+ LF +M    I P    F  VLS C      D G Q   L       
Sbjct: 186 SGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSS 245

Query: 189 ---------------MRNDASLEPPRAE-------HYTAIVGLLGRAGFLNEAESFINSM 226
                          M N  S E   ++        + +++  L + GF + A      M
Sbjct: 246 LETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKM 305

Query: 227 SRN---PGPSVYKALLSACQVHG 246
            R+   P      +LLSAC  +G
Sbjct: 306 KRDYLKPDCVTVASLLSACASNG 328



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 17/205 (8%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S  D +  +  +  +N +SWNA+I G+   G G +A+  F +M+Q G   ++
Sbjct: 659 ITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNH 718

Query: 63  FTITSIVGA---IGVISG----FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
            T   ++ A   +G+++     F+   + H L+ K  + + V      V + +  G ++ 
Sbjct: 719 VTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACV------VDLISRAGFLSR 772

Query: 116 ANKVFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFLVVLSAC 173
           A K    M  E D   W +LL  C  H      V  F      E++P D  T++++ +  
Sbjct: 773 ARKFIEEMPIEPDATIWRTLLSACTVH--KNVEVGEFAAQHLLELEPEDSATYVLLSNMY 830

Query: 174 CHAGFIDKGLQYFYLMRNDASLEPP 198
             +G  D   Q   +MRN    + P
Sbjct: 831 AVSGKWDCRDQTRQMMRNRGVKKEP 855



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 92/231 (39%), Gaps = 29/231 (12%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           E K++H  I K+G+ +   + N+LV +Y   G ++   KVF  M  R + SW+ ++ G  
Sbjct: 28  ECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFM 87

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC------------HAGFIDKGLQYFY 187
               S   + LF  M +  + P   +F  VL AC             HA  I  GL    
Sbjct: 88  EKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSP 147

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN 247
           ++ N              ++GL  + G +  A    +++      S + A++S    +G 
Sbjct: 148 IISN-------------PLIGLYAKNGLIISARKVFDNLCTKDSVS-WVAMISGFSQNGY 193

Query: 248 REIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
            E A+          ++P       +LS  +K    +D    +  L++  G
Sbjct: 194 EEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTK-IKLFDVGEQLHALVFKYG 243


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 126/304 (41%), Positives = 190/304 (62%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C    + + ++  +  R+ ++W A++ G+  LG  ++A+  F  M+Q GI  D 
Sbjct: 340 ITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDK 399

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T TS + +    +  +EGK +H  +   GY  +V++Q+ LV MYA CG+++DA  VF+ 
Sbjct: 400 MTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQ 459

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER++V+W +++ GCA HG  REA++ FEQM+K  IKPD  TF  VLSAC H G +++G
Sbjct: 460 MSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEG 519

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            ++F  M  D  ++ P  EHY+  V LLGRAG L EAE+ I +M   PGPSV+ ALLSAC
Sbjct: 520 RKHFRSMYLDYGIK-PMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSAC 578

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H + E   R+A+ VL L P+D   YV LSN+  A   ++DA  +R +M  R + K+PG
Sbjct: 579 RIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPG 638

Query: 303 YSWV 306
            SW+
Sbjct: 639 QSWI 642



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 126/242 (52%), Gaps = 5/242 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      Q ++  +  +N ++W  +IAG+   G  + AL+   +M+QA +  +  T 
Sbjct: 242 YAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITY 301

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI+         + GK++H  I + GY   ++V N L+ MY  CG + +A K+F  +  
Sbjct: 302 TSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPH 361

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RD+V+W +++ G A  G+  EA+ LF +MQ+  IKPD  TF   L++C    F+ +G   
Sbjct: 362 RDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSI 421

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +  L+    SL+       +A+V +  + G +++A    N MS       + A+++ C  
Sbjct: 422 HQQLVHAGYSLD---VYLQSALVSMYAKCGSMDDARLVFNQMSER-NVVAWTAMITGCAQ 477

Query: 245 HG 246
           HG
Sbjct: 478 HG 479



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 92/177 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D + V+  +R RN +SW A+I  F       +A KC+  M+ AG   D  T 
Sbjct: 141 YAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTF 200

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A       + G+++H  I K G +    V   LV MYA CG I+ A  +F  + E
Sbjct: 201 VSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPE 260

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +++V+W  L+ G A  G    A++L E+MQ+ E+ P+  T+  +L  C     ++ G
Sbjct: 261 KNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHG 317



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 119/242 (49%), Gaps = 19/242 (7%)

Query: 3   ILTYSRCDSSLD--FQNVYSSVRTRNQISWNA------------IIAGFCNLGSGEQALK 48
           IL ++R  S++D  F+    +V + +Q+  NA             ++  C  G  ++AL 
Sbjct: 24  ILMFNRYQSNVDTAFELTTPTV-SHDQLPGNAGFRKVDTLANSGDVSILCKQGRLKEALG 82

Query: 49  CFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA 108
             + M   G  +       ++     +   ++G+++HA I K G   N +++N L+ MYA
Sbjct: 83  ILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYA 142

Query: 109 ICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
            CG++ DA +VF  + +R++VSW +++        + EA + +E M+    KPD  TF+ 
Sbjct: 143 KCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVS 202

Query: 169 VLSACCHAGFIDKGLQYFYLMRNDASLE-PPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
           +L+A  +   +  G Q  ++    A LE  PR    T++VG+  + G +++A+   + + 
Sbjct: 203 LLNAFTNPELLQVG-QKVHMEIAKAGLELEPRVG--TSLVGMYAKCGDISKAQVIFDKLP 259

Query: 228 RN 229
             
Sbjct: 260 EK 261


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/289 (43%), Positives = 187/289 (64%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ +SW A+IAG+   G G+++L  F++MR+ G+  D F + S++ A   ++ 
Sbjct: 98  LFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAA 157

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G+Q HA + + G+  ++ V + LV MYA  G++ DA +VF  M +R+ VSWNS++ G
Sbjct: 158 LELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITG 217

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
           CA HG   +AV LFEQM +  IKP+  +F+ VLSAC H G +++G  YF LM  +  +  
Sbjct: 218 CAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGI-V 276

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P   HYT ++ LLGRAG L+EAE+FIN M   P  SV+ ALL AC++HGN E+A R A+ 
Sbjct: 277 PDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEH 336

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +L +      IYVLLSN+  A   WDDA  +R LM +RG+ K+PGYSW+
Sbjct: 337 LLGMEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWI 385



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 136/279 (48%), Gaps = 38/279 (13%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           M   G+  + FT++++V A   I+  ++GKQ H  I K+G++S+V VQ  LV MYA CG+
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 113 INDAN-------------------------------KVFSSMDERDLVSWNSLLLGCAHH 141
           + DA                                K+F  M ERD+VSW +++ G A +
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF-YLMRNDASLEPPRA 200
           GY  E++ +F QM+KT +K D      VLSAC     ++ G Q+  Y++++  +L+    
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260
              +A+V +  ++G + +A    + M +    S + ++++ C  HG    AV   +++L 
Sbjct: 181 ---SALVDMYAKSGSMEDACQVFDKMPQRNEVS-WNSIITGCAQHGRGNDAVLLFEQMLQ 236

Query: 261 --LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
             + PN+ +   +LS  S      +  G    +  N GI
Sbjct: 237 AGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGI 275



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 11/239 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  S  D   V+  +  RN++SWN+II G    G G  A+  F +M QAGI  +  + 
Sbjct: 187 YAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISF 246

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A        EG+    L+ +  G   +V     ++ +    G +++A    + M 
Sbjct: 247 VGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMP 306

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            E D+  W +LL  C  HG +  A ++ E +   E++  G  ++++ +    AG  D   
Sbjct: 307 VEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAG-IYVLLSNIYAAAGQWDDAA 365

Query: 184 QYFYLMRNDASLEPP-------RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVY 235
           +   LM++   ++ P       +   +  + G       L E   F+ S+SR    + Y
Sbjct: 366 KVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQ-LKEIHEFLESLSRKMKAAGY 423


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 125/301 (41%), Positives = 188/301 (62%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           +  C   +  +N+++ +  R+ +SWN IIAGF   G  + A   F  M+++GI  D  T 
Sbjct: 559 FVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITF 618

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T ++ A        EG+++HALI +  +D +V V   L+ MY  CG+I DA++VF  + +
Sbjct: 619 TGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPK 678

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++ SW S++ G A HG  +EA++LF QMQ+  +KPD  TF+  LSAC HAG I++GL +
Sbjct: 679 KNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHH 738

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+ + ++E PR EHY  +V L GRAG LNEA  FI  M   P   V+ ALL ACQVH
Sbjct: 739 FQSMK-EFNIE-PRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVH 796

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+A ++A++ L+L PND  ++V+LSN+  A   W +   +R +M +RG+ KKPG SW
Sbjct: 797 LNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSW 856

Query: 306 V 306
           +
Sbjct: 857 I 857



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 135/272 (49%), Gaps = 32/272 (11%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C +++  + ++  +R ++  SWN ++ G+   G  E+A K   +M Q  +  D 
Sbjct: 152 INMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDK 211

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S++ A        +G++++ LI K G+D+++FV   L+ M+  CG I DA KVF +
Sbjct: 212 RTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDN 271

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  RDLV+W S++ G A HG  ++A  LF++M++  ++PD   F+ +L AC H   +++G
Sbjct: 272 LPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQG 331

Query: 183 LQYFYLMRN-----------------------DASLE------PPRAEHYTAIVGLLGRA 213
            +    M+                        + +LE            +TA++    + 
Sbjct: 332 KKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQH 391

Query: 214 GFLNEAESFINSMSRN---PGPSVYKALLSAC 242
           G ++EA  F N M  +   P    + ++L AC
Sbjct: 392 GRIDEAFLFFNKMIESGIEPNRVTFMSILGAC 423



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 133/246 (54%), Gaps = 3/246 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D   V+  V+ RN +SW A+IAGF   G  ++A   F++M ++GI+ +  T 
Sbjct: 357 YTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTF 416

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+GA    S  K G+Q+   I + GY S+  V+  L+ MYA CG++ DA++VF  + +
Sbjct: 417 MSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISK 476

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++V+WN+++     H     A+  F+ + K  IKP+ +TF  +L+ C  +  ++ G ++
Sbjct: 477 QNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG-KW 535

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            + +   A LE        A+V +    G L  A++  N M +    S +  +++    H
Sbjct: 536 VHFLIMKAGLESD-LHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVS-WNTIIAGFVQH 593

Query: 246 GNREIA 251
           G  ++A
Sbjct: 594 GKNQVA 599



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 145/296 (48%), Gaps = 12/296 (4%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           +C    D   V+ ++ TR+ ++W ++I G    G  +QA   F  M + G+  D     S
Sbjct: 258 KCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVS 317

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           ++ A       ++GK++HA + ++G+D+ ++V   ++ MY  CG++ DA +VF  +  R+
Sbjct: 318 LLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRN 377

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
           +VSW +++ G A HG   EA   F +M ++ I+P+  TF+ +L AC     + +G Q   
Sbjct: 378 VVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI-- 435

Query: 188 LMRNDASLEPPRAEH---YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
               D  +E          TA++ +  + G L +A      +S+      + A+++A   
Sbjct: 436 ---QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQ-NVVAWNAMITAYVQ 491

Query: 245 HGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
           H   + A+ + + +L   + PN      +L NV K++D  +    +  L+   G+ 
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSIL-NVCKSSDSLELGKWVHFLIMKAGLE 546



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 101/188 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D   V+  +  +N ++WNA+I  +      + AL  F  + + GI  +  T 
Sbjct: 458 YAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTF 517

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI+         + GK +H LI K G +S++ V N LV M+  CG +  A  +F+ M +
Sbjct: 518 TSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPK 577

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDLVSWN+++ G   HG ++ A   F+ MQ++ IKPD  TF  +L+AC     + +G + 
Sbjct: 578 RDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRL 637

Query: 186 FYLMRNDA 193
             L+   A
Sbjct: 638 HALITEAA 645



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 132/304 (43%), Gaps = 41/304 (13%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           NA++      G   +A++    +  + I I   T ++++          +G++++  I K
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
            G   ++F+ N L+ MYA CG    A ++F  M E+D+ SWN LL G   HG   EA +L
Sbjct: 139 SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN------------------- 191
            EQM +  +KPD  TF+ +L+AC  A  +DKG + + L+                     
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 192 -----DAS-----LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR---NPGPSVYKAL 238
                DA+     L       +T+++  L R G   +A +    M      P    + +L
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 239 LSACQVHGNREIAVRSAKRVLDLWPN---DPAIYVLLSNVSKATDC--WDDAGDIRTLMY 293
           L AC    N   A+   K+V         D  IYV  + +S  T C   +DA ++  L+ 
Sbjct: 319 LRAC----NHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVK 374

Query: 294 NRGI 297
            R +
Sbjct: 375 GRNV 378



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 7/172 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S  D   V+  +  +N  SW ++I G+   G G++AL+ F +M+Q G+  D+
Sbjct: 657 ISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDW 716

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T    + A       +EG      + +   +  +     +V ++   G +N+A +    
Sbjct: 717 ITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIK 776

Query: 123 MD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQ--MQKTEIKPDGTTFLVVLS 171
           M  E D   W +LL  C  H      V+L E+   +K E+ P+     V+LS
Sbjct: 777 MQVEPDSRVWGALLGACQVH----LNVELAEKAAQKKLELDPNDNGVFVILS 824


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  260 bits (665), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 125/301 (41%), Positives = 188/301 (62%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           +  C   +  +N+++ +  R+ +SWN IIAGF   G  + A   F  M+++GI  D  T 
Sbjct: 559 FVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITF 618

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T ++ A        EG+++HALI +  +D +V V   L+ MY  CG+I DA++VF  + +
Sbjct: 619 TGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPK 678

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++ SW S++ G A HG  +EA++LF QMQ+  +KPD  TF+  LSAC HAG I++GL +
Sbjct: 679 KNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHH 738

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+ + ++E PR EHY  +V L GRAG LNEA  FI  M   P   V+ ALL ACQVH
Sbjct: 739 FQSMK-EFNIE-PRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVH 796

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+A ++A++ L+L PND  ++V+LSN+  A   W +   +R +M +RG+ KKPG SW
Sbjct: 797 LNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSW 856

Query: 306 V 306
           +
Sbjct: 857 I 857



 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 135/272 (49%), Gaps = 32/272 (11%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C +++  + ++  +R ++  SWN ++ G+   G  E+A K   +M Q  +  D 
Sbjct: 152 INMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDK 211

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S++ A        +G++++ LI K G+D+++FV   L+ M+  CG I DA KVF +
Sbjct: 212 RTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDN 271

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  RDLV+W S++ G A HG  ++A  LF++M++  ++PD   F+ +L AC H   +++G
Sbjct: 272 LPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQG 331

Query: 183 LQYFYLMRN-----------------------DASLE------PPRAEHYTAIVGLLGRA 213
            +    M+                        + +LE            +TA++    + 
Sbjct: 332 KKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQH 391

Query: 214 GFLNEAESFINSMSRN---PGPSVYKALLSAC 242
           G ++EA  F N M  +   P    + ++L AC
Sbjct: 392 GRIDEAFLFFNKMIESGIEPNRVTFMSILGAC 423



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 133/246 (54%), Gaps = 3/246 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D   V+  V+ RN +SW A+IAGF   G  ++A   F++M ++GI+ +  T 
Sbjct: 357 YTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTF 416

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+GA    S  K G+Q+   I + GY S+  V+  L+ MYA CG++ DA++VF  + +
Sbjct: 417 MSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISK 476

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++V+WN+++     H     A+  F+ + K  IKP+ +TF  +L+ C  +  ++ G ++
Sbjct: 477 QNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG-KW 535

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            + +   A LE        A+V +    G L  A++  N M +    S +  +++    H
Sbjct: 536 VHFLIMKAGLESD-LHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVS-WNTIIAGFVQH 593

Query: 246 GNREIA 251
           G  ++A
Sbjct: 594 GKNQVA 599



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 145/296 (48%), Gaps = 12/296 (4%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           +C    D   V+ ++ TR+ ++W ++I G    G  +QA   F  M + G+  D     S
Sbjct: 258 KCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVS 317

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           ++ A       ++GK++HA + ++G+D+ ++V   ++ MY  CG++ DA +VF  +  R+
Sbjct: 318 LLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRN 377

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
           +VSW +++ G A HG   EA   F +M ++ I+P+  TF+ +L AC     + +G Q   
Sbjct: 378 VVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI-- 435

Query: 188 LMRNDASLEPPRAEH---YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
               D  +E          TA++ +  + G L +A      +S+      + A+++A   
Sbjct: 436 ---QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQ-NVVAWNAMITAYVQ 491

Query: 245 HGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
           H   + A+ + + +L   + PN      +L NV K++D  +    +  L+   G+ 
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSIL-NVCKSSDSLELGKWVHFLIMKAGLE 546



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 101/188 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D   V+  +  +N ++WNA+I  +      + AL  F  + + GI  +  T 
Sbjct: 458 YAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTF 517

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI+         + GK +H LI K G +S++ V N LV M+  CG +  A  +F+ M +
Sbjct: 518 TSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPK 577

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDLVSWN+++ G   HG ++ A   F+ MQ++ IKPD  TF  +L+AC     + +G + 
Sbjct: 578 RDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRL 637

Query: 186 FYLMRNDA 193
             L+   A
Sbjct: 638 HALITEAA 645



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 133/304 (43%), Gaps = 41/304 (13%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           NA++      G   +A++    +  + I I   T ++++          +G++++  I K
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
            G   ++F++N L+ MYA CG    A ++F  M E+D+ SWN LL G   HG   EA +L
Sbjct: 139 SGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN------------------- 191
            EQM +  +KPD  TF+ +L+AC  A  +DKG + + L+                     
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 192 -----DAS-----LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR---NPGPSVYKAL 238
                DA+     L       +T+++  L R G   +A +    M      P    + +L
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 239 LSACQVHGNREIAVRSAKRVLDLWPN---DPAIYVLLSNVSKATDC--WDDAGDIRTLMY 293
           L AC    N   A+   K+V         D  IYV  + +S  T C   +DA ++  L+ 
Sbjct: 319 LRAC----NHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVK 374

Query: 294 NRGI 297
            R +
Sbjct: 375 GRNV 378



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 7/172 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S  D   V+  +  +N  SW ++IAG+   G G++AL+ F +M+Q G+  D+
Sbjct: 657 ISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDW 716

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T    + A       +EG      + +   +  +     +V ++   G +N+A +    
Sbjct: 717 ITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIK 776

Query: 123 MD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQ--MQKTEIKPDGTTFLVVLS 171
           M  E D   W +LL  C  H      V+L E+   +K E+ P+     V+LS
Sbjct: 777 MQVEPDSRVWGALLGACQVH----LNVELAEKAAQKKLELDPNDNGVFVILS 824


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  260 bits (665), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 123/291 (42%), Positives = 187/291 (64%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +N +  +  R+ ISW AIIAG+   G GE+AL  F EM++ G  ++  T TS +     I
Sbjct: 348 RNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEI 407

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  + GKQ+H  + K G +S  +V N L+ MY  CG I+DA  VF  ++E+++VSWN+++
Sbjct: 408 AALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMI 467

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG+ +EA+ LFE M+KT I PD  T + VLSAC H G +DKG +YFY M  D  +
Sbjct: 468 AGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGI 527

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
               ++HYT ++ LLGRAG L++A++ + +M   P  + + ALL A ++HGN E+  ++A
Sbjct: 528 -TANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAA 586

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           K + ++ P++  +YVLLSN+  A+  W D G +R  M +RG++K PGYSWV
Sbjct: 587 KMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWV 637



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 31/206 (15%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y + +  +D + ++  +  R+++SWN +I+G+   G   +A + F E        D FT 
Sbjct: 214 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR----DVFTW 269

Query: 66  TSIVGAI-------------------------GVISGFKEGKQMHAL--IFKIGYDSNVF 98
           T++V                             +I+G+ + K+M     +F+     NV 
Sbjct: 270 TAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVS 329

Query: 99  VQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
             N ++  YA  G I  A   F  M +RD +SW +++ G A  GY  EA+ LF +M++  
Sbjct: 330 SWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 389

Query: 159 IKPDGTTFLVVLSACCHAGFIDKGLQ 184
            + + +TF   LS C     ++ G Q
Sbjct: 390 ERLNRSTFTSTLSTCAEIAALELGKQ 415



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 16/171 (9%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ +SWNA+++G+   G  ++A + F EM             + +   G+++ 
Sbjct: 133 LFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM----------PCKNSISWNGMLAA 182

Query: 78  FKEGKQMH--ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           + +  ++     +F+   D  +   N ++  Y     + DA  +F  M ERD VSWN+++
Sbjct: 183 YVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMI 242

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
            G A +G   EA +LFE+    ++     T+  ++S     G +D+  + F
Sbjct: 243 SGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVF 289



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 15/154 (9%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           +CDS+L    +++S+  R+ ISWNA+I+G  +      A + F +M              
Sbjct: 64  QCDSAL---RLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKM----------PTRD 110

Query: 68  IVGAIGVISGFKEGKQMHA--LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +V    +ISG    + + A  L+F    + +V   N ++  YA  G + +A ++F  M  
Sbjct: 111 LVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPC 170

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
           ++ +SWN +L     +G   +A +LFE     E+
Sbjct: 171 KNSISWNGMLAAYVQNGRIEDARRLFESKADWEL 204



 Score = 44.3 bits (103), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
           A ++F  M  RDLVSWN ++ GC  +   R A  LF+QM + ++     ++  +LS    
Sbjct: 99  ARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDV----VSWNAMLSGYAQ 154

Query: 176 AGFIDKGLQYF 186
            G++ +  + F
Sbjct: 155 NGYVKEAKEIF 165



 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 13/164 (7%)

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
           +  D+++   N  +  +   G  + A ++F+SM  R  +SWN+++ GC  +     A QL
Sbjct: 43  LATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQL 102

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR-AEHYTAIVGL 209
           FE+M   ++     ++ V++S C     +      F  M       P R    + A++  
Sbjct: 103 FEKMPTRDL----VSWNVMISGCVRYRNLRAARLLFDQM-------PERDVVSWNAMLSG 151

Query: 210 LGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
             + G++ EA+   + M      S +  +L+A   +G  E A R
Sbjct: 152 YAQNGYVKEAKEIFDEMPCKNSIS-WNGMLAAYVQNGRIEDARR 194


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  260 bits (664), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 125/304 (41%), Positives = 191/304 (62%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++       +N +  +  R+ ISW AIIAG+   G GE+AL  F EM++ G  ++ 
Sbjct: 254 ITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNR 313

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T TS +     I+  + GKQ+H  + K G +S  +V N L+ MY  CG I+DA  VF  
Sbjct: 314 STFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEG 373

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++E+++VSWN+++ G A HG+ +EA+ LFE M+KT I PD  T + VLSAC H G +DKG
Sbjct: 374 IEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKG 433

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YFY M  D  +    ++HYT ++ LLGRAG L++A++ + +M   P  + + ALL A 
Sbjct: 434 TEYFYSMTQDYGI-TANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGAS 492

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN E+  ++AK + ++ P++  +YVLLSN+  A+  W D G +R  M +RG++K PG
Sbjct: 493 RIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPG 552

Query: 303 YSWV 306
           YSWV
Sbjct: 553 YSWV 556



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 31/206 (15%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y + +  +D + ++  +  R+++SWN +I+G+   G   +A + F E        D FT 
Sbjct: 133 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR----DVFTW 188

Query: 66  TSIVGAI-------------------------GVISGFKEGKQMHAL--IFKIGYDSNVF 98
           T++V                             +I+G+ + K+M     +F+     NV 
Sbjct: 189 TAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVS 248

Query: 99  VQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
             N ++  YA  G I  A   F  M +RD +SW +++ G A  GY  EA+ LF +M++  
Sbjct: 249 SWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 308

Query: 159 IKPDGTTFLVVLSACCHAGFIDKGLQ 184
            + + +TF   LS C     ++ G Q
Sbjct: 309 ERLNRSTFTSTLSTCAEIAALELGKQ 334



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 16/171 (9%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ +SWNA+++G+   G  ++A + F EM             + +   G+++ 
Sbjct: 52  LFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM----------PCKNSISWNGMLAA 101

Query: 78  FKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           + +  ++     +F+   D  +   N ++  Y     + DA  +F  M ERD VSWN+++
Sbjct: 102 YVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMI 161

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
            G A +G   EA +LFE+    ++     T+  ++S     G +D+  + F
Sbjct: 162 SGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVF 208



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSACC 174
           A  +F  M ERD+VSWN++L G A +GY +EA ++F++M  K  I  +G     +L+A  
Sbjct: 49  ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNG-----MLAAYV 103

Query: 175 HAGFIDKGLQYF 186
             G I+   + F
Sbjct: 104 QNGRIEDARRLF 115



 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 37/73 (50%)

Query: 87  LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSRE 146
           L+F    + +V   N ++  YA  G + +A ++F  M  ++ +SWN +L     +G   +
Sbjct: 51  LLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIED 110

Query: 147 AVQLFEQMQKTEI 159
           A +LFE     E+
Sbjct: 111 ARRLFESKADWEL 123


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 127/305 (41%), Positives = 195/305 (63%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C    + + ++S +  R+ ++W A++ G+  LG  ++A+  F  M+Q GI  D 
Sbjct: 291 ITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDK 350

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T TS++ +    +  +EGK++H  +   GY+ +V++Q+ LV MYA CG+++DA+ VF+ 
Sbjct: 351 MTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQ 410

Query: 123 MDERDLVSWNSLLLG-CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           M ER++V+W +++ G CA HG  REA++ F+QM+K  IKPD  TF  VLSAC H G +++
Sbjct: 411 MSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEE 470

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G ++F  M  D  ++ P  EHY+  V LLGRAG L EAE+ I SM   PGPSV+ ALLSA
Sbjct: 471 GRKHFRSMYLDYGIK-PMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSA 529

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+VH + E   R+A+ VL L P+D   YV LS++  A   ++DA  +R +M  R + K+P
Sbjct: 530 CRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEP 589

Query: 302 GYSWV 306
           G SW+
Sbjct: 590 GQSWI 594



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 124/246 (50%), Gaps = 12/246 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + ++  +  +N ++W  +IAG+   G  + AL+    M+QA +  +  T 
Sbjct: 193 YAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITF 252

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+      +  + GK++H  I + GY   ++V N L+ MY  CG + +A K+FS +  
Sbjct: 253 ASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPH 312

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+V+W +++ G A  G+  EA+ LF +MQ+  IKPD  TF  VL++C    F+ +G + 
Sbjct: 313 RDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRI 372

Query: 186 FYLMRN-----DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
              + +     D  L+       +A+V +  + G +++A    N MS     +    +  
Sbjct: 373 HQQLVHAGYNLDVYLQ-------SALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITG 425

Query: 241 ACQVHG 246
            C  HG
Sbjct: 426 CCAQHG 431



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 92/177 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D + V+ S+R RN +SW A+I  F       +A KC+  M+ AG   D  T 
Sbjct: 92  YAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTF 151

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A       + G+++H  I + G +    V   LV MYA CG I+ A  +F  + E
Sbjct: 152 VSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPE 211

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +++V+W  L+ G A  G    A++L E MQ+ E+ P+  TF  +L  C     ++ G
Sbjct: 212 KNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHG 268



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 101/197 (51%), Gaps = 4/197 (2%)

Query: 34  IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY 93
           ++  C  G  ++AL   + M   G  +       ++     +   ++G+++HA I K G 
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
             N +++N L+ MYA CG++ DA +VF S+ +R++VSW +++        + EA + +E 
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE-PPRAEHYTAIVGLLGR 212
           M+    KPD  TF+ +L+A  +   +  G Q  ++   +A LE  PR    T++VG+  +
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLG-QKVHMEIVEAGLELEPRVG--TSLVGMYAK 195

Query: 213 AGFLNEAESFINSMSRN 229
            G +++A    + +   
Sbjct: 196 CGDISKARVIFDRLPEK 212


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 122/301 (40%), Positives = 189/301 (62%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC  S +  +++ ++  +++I+WN +++GF   G  E+AL+ F +M QAG+  + FT 
Sbjct: 491 YARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTF 550

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + A   ++  K+GKQ+HA + K G  S   V N L+ +Y  CG+I DA   F  M E
Sbjct: 551 VSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSE 610

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWN+++  C+ HG+  EA+ LF+QM++  +KP+  TF+ VL+AC H G +++GL Y
Sbjct: 611 RNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGY 670

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M ++  +  PR +HY  +V +LGRAG L+ A  F+  M  +    V++ LLSAC+VH
Sbjct: 671 FKSMSSEHGIH-PRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVH 729

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N EI   +AK +L+L P+D A YVLLSN    T  W     +R +M +RG+RK+PG SW
Sbjct: 730 KNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSW 789

Query: 306 V 306
           +
Sbjct: 790 I 790



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 146/291 (50%), Gaps = 7/291 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + +   +  ++ +SW ++IAG+      ++AL+ F +M+  GI  D   + S + A   I
Sbjct: 400 RRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGI 459

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              ++G+Q+H+ ++  GY ++V + N LV +YA CG   +A  +F +++ +D ++WN ++
Sbjct: 460 KAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMV 519

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G A  G   EA+++F +M +  +K +  TF+  +SA  +   I +G Q +  +++   +
Sbjct: 520 SGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCT 579

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH--GNREIAV 252
            E   A    A++ L G+ G + +A+     MS     S +  ++++C  H  G   + +
Sbjct: 580 SETEVA---NALISLYGKCGSIEDAKMQFFEMSERNHVS-WNTIITSCSQHGWGLEALDL 635

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
               +   L PND     +L+  S      +  G  +++    GI  +P +
Sbjct: 636 FDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDH 686



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 135/267 (50%), Gaps = 9/267 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y R  S    + V+S +   +++++N +I+     G+GE AL+ F EMR +G   D 
Sbjct: 185 IALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDC 244

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            TI S++ A   I    +GKQ+H+ + K G   +  ++  L+ +Y  CG I +A ++F S
Sbjct: 245 VTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKS 304

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            D  ++V WN +L+         ++  LF QM    ++P+  T+  +L  C +AG I+ G
Sbjct: 305 GDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLG 364

Query: 183 LQYFYLMRNDASLEPPRAEHYTA--IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
            Q  +L+      E   ++ Y +  ++ +  + G+L++A   +  +      S + ++++
Sbjct: 365 EQ-IHLLSIKTGFE---SDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVS-WTSMIA 419

Query: 241 ACQVHGNREIAVRSAK--RVLDLWPND 265
               H   + A+ + K  ++  +WP++
Sbjct: 420 GYVQHEFCKEALETFKDMQLFGIWPDN 446



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 116/215 (53%), Gaps = 4/215 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ +SW A+++G+   G GE+A+  + +M  +G+    + ++S++ A    
Sbjct: 97  RRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKA 156

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           + F++G+ +HA ++K G  S   V N L+ +Y   G+++ A +VFS M   D V++N+L+
Sbjct: 157 ALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLI 216

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
              A  G    A+++FE+M+ +   PD  T   +L+AC   G ++KG Q + YL++   S
Sbjct: 217 SRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMS 276

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
              P      +++ L  + G + EA     S  R 
Sbjct: 277 ---PDYIIEGSLLDLYVKCGVIVEALEIFKSGDRT 308



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 12/229 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C   ++   ++ S    N + WN ++  +  +    ++   F +M  AG+  + FT 
Sbjct: 289 YVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTY 348

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++           G+Q+H L  K G++S+++V   L+ MY+  G ++ A ++   ++ 
Sbjct: 349 PCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEA 408

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D+VSW S++ G   H + +EA++ F+ MQ   I PD       +SAC     + +G Q 
Sbjct: 409 KDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQI 468

Query: 185 ----YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
               Y      D S+       + A+V L  R G   EA S   ++   
Sbjct: 469 HSRVYVSGYSADVSI-------WNALVNLYARCGRSKEAFSLFEAIEHK 510



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 4/144 (2%)

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +HA     G   +    N L+ +YA  G +  A +VF  +  RD VSW ++L G A +G 
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQYFYLMRNDASLEPPRAEH 202
             EAV L+ QM  + + P       VLSAC  A   ++G L +  + +  +  E      
Sbjct: 124 GEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVG-- 181

Query: 203 YTAIVGLLGRAGFLNEAESFINSM 226
             A++ L  R G L+ AE   + M
Sbjct: 182 -NALIALYLRFGSLSLAERVFSEM 204



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 20/179 (11%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---D 59
           I  Y +C S  D +  +  +  RN +SWN II      G G +AL  F +M+Q G+   D
Sbjct: 589 ISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPND 648

Query: 60  IDYFTITSIVGAIGVISG----FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
           + +  + +    +G++      FK     H +  +  + + V      V +    G ++ 
Sbjct: 649 VTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACV------VDILGRAGQLDR 702

Query: 116 ANKVFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLS 171
           A K    M    + + W +LL  C  H    + +++ E   K   E++P  +   V+LS
Sbjct: 703 ARKFVEEMPVSANAMVWRTLLSACRVH----KNIEIGELAAKYLLELEPHDSASYVLLS 757


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 185/301 (61%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC    +  + +  +  +++I+WN +++GF   G  E+ALK F  M Q+G+  + FT 
Sbjct: 491 YARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTF 550

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + A   ++  K+GKQ+HA + K G+     V N L+ +Y  CG+  DA   FS M E
Sbjct: 551 VSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSE 610

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWN+++  C+ HG   EA+ LF+QM+K  IKP+  TF+ VL+AC H G +++GL Y
Sbjct: 611 RNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSY 670

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M ++  +  PR +HY  ++ + GRAG L+ A+ FI  M       V++ LLSAC+VH
Sbjct: 671 FKSMSDEYGIR-PRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVH 729

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +AK +L+L P+D A YVLLSN    T+ W +   +R +M +RG+RK+PG SW
Sbjct: 730 KNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSW 789

Query: 306 V 306
           +
Sbjct: 790 I 790



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 110/191 (57%), Gaps = 1/191 (0%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           L I  YS+    L  + V+  +  R+ +SW A+++G+   G GE+AL  + +M +AG+  
Sbjct: 82  LLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVP 141

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
             + ++S++ +      F +G+ +HA  +K G+ S +FV N ++ +Y  CG+   A +VF
Sbjct: 142 TPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVF 201

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M  RD V++N+L+ G A  G+   A+++FE+MQ + + PD  T   +L+AC   G + 
Sbjct: 202 CDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQ 261

Query: 181 KGLQ-YFYLMR 190
           KG Q + YL +
Sbjct: 262 KGTQLHSYLFK 272



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 144/291 (49%), Gaps = 7/291 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V   ++ ++ +SW ++IAG+      + AL  F EM++ GI  D   + S +     I
Sbjct: 400 RRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGI 459

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  ++G Q+HA I+  GY  +V + N LV +YA CG I +A   F  ++ +D ++WN L+
Sbjct: 460 NAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLV 519

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G A  G   EA+++F +M ++ +K +  TF+  LSA  +   I +G Q +  +++   S
Sbjct: 520 SGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHS 579

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN--REIAV 252
            E    E   A++ L G+ G   +A+   + MS     S +  ++++C  HG     + +
Sbjct: 580 FE---TEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS-WNTIITSCSQHGRGLEALDL 635

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
               +   + PND     +L+  S      +     +++    GIR +P +
Sbjct: 636 FDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDH 686



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 99/186 (53%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC S    + V+  +  R+ +++N +I+G    G GE AL+ F EM+ +G+  D 
Sbjct: 185 ITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDC 244

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            TI+S++ A   +   ++G Q+H+ +FK G  S+  ++  L+ +Y  CG +  A  +F+S
Sbjct: 245 VTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNS 304

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            D  ++V WN +L+         ++ +LF QMQ   I+P+  T+  +L  C     ID G
Sbjct: 305 SDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG 364

Query: 183 LQYFYL 188
            Q   L
Sbjct: 365 EQIHSL 370



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 12/219 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C        +++S    N + WN ++  F  +    ++ + F +M+ AGI  + FT 
Sbjct: 289 YVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTY 348

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             I+           G+Q+H+L  K G++S+++V   L+ MY+  G +  A +V   + E
Sbjct: 349 PCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKE 408

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D+VSW S++ G   H   ++A+  F++MQK  I PD       +S C     + +GLQ 
Sbjct: 409 KDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQI 468

Query: 185 ----YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
               Y      D S+       + A+V L  R G + EA
Sbjct: 469 HARIYVSGYSGDVSI-------WNALVNLYARCGRIREA 500



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 49/100 (49%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           ++HA     G      V N L+ +Y+  G +  A +VF  +  RD VSW ++L G A +G
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              EA+ L+ QM +  + P       VLS+C  A    +G
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG 162



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 4/171 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S  D +  +S +  RN++SWN II      G G +AL  F +M++ GI  + 
Sbjct: 589 ISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPND 648

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T   ++ A   +   +EG     ++  + G          ++ ++   G ++ A K   
Sbjct: 649 VTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIE 708

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            M    D + W +LL  C  H      V  F      E++P  +   V+LS
Sbjct: 709 EMPIAADAMVWRTLLSACKVH--KNIEVGEFAAKHLLELEPHDSASYVLLS 757


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 185/301 (61%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC    +  + +  +  +++I+WN +++GF   G  E+ALK F  M Q+G+  + FT 
Sbjct: 491 YARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTF 550

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + A   ++  K+GKQ+HA + K G+     V N L+ +Y  CG+  DA   FS M E
Sbjct: 551 VSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSE 610

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWN+++  C+ HG   EA+ LF+QM+K  IKP+  TF+ VL+AC H G +++GL Y
Sbjct: 611 RNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSY 670

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M ++  +  PR +HY  ++ + GRAG L+ A+ FI  M       V++ LLSAC+VH
Sbjct: 671 FKSMSDEYGIR-PRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVH 729

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +AK +L+L P+D A YVLLSN    T+ W +   +R +M +RG+RK+PG SW
Sbjct: 730 KNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSW 789

Query: 306 V 306
           +
Sbjct: 790 I 790



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 110/191 (57%), Gaps = 1/191 (0%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           L I  YS+    L  + V+  +  R+ +SW A+++G+   G GE+AL  + +M +AG+  
Sbjct: 82  LLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVP 141

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
             + ++S++ +      F +G+ +HA  +K G+ S +FV N ++ +Y  CG+   A +VF
Sbjct: 142 TPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVF 201

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M  RD V++N+L+ G A  G+   A+++FE+MQ + + PD  T   +L+AC   G + 
Sbjct: 202 CDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQ 261

Query: 181 KGLQ-YFYLMR 190
           KG Q + YL +
Sbjct: 262 KGTQLHSYLFK 272



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 144/291 (49%), Gaps = 7/291 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V   ++ ++ +SW ++IAG+      + AL  F EM++ GI  D   + S +     I
Sbjct: 400 RRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGI 459

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  ++G Q+HA I+  GY  +V + N LV +YA CG I +A   F  ++ +D ++WN L+
Sbjct: 460 NAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLV 519

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G A  G   EA+++F +M ++ +K +  TF+  LSA  +   I +G Q +  +++   S
Sbjct: 520 SGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHS 579

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN--REIAV 252
            E    E   A++ L G+ G   +A+   + MS     S +  ++++C  HG     + +
Sbjct: 580 FE---TEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS-WNTIITSCSQHGRGLEALDL 635

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
               +   + PND     +L+  S      +     +++    GIR +P +
Sbjct: 636 FDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDH 686



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 99/186 (53%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC S    + V+  +  R+ +++N +I+G    G GE AL+ F EM+ +G+  D 
Sbjct: 185 ITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDC 244

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            TI+S++ A   +   ++G Q+H+ +FK G  S+  ++  L+ +Y  CG +  A  +F+S
Sbjct: 245 VTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNS 304

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            D  ++V WN +L+         ++ +LF QMQ   I+P+  T+  +L  C     ID G
Sbjct: 305 SDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG 364

Query: 183 LQYFYL 188
            Q   L
Sbjct: 365 EQIHSL 370



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 12/219 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C        +++S    N + WN ++  F  +    ++ + F +M+ AGI  + FT 
Sbjct: 289 YVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTY 348

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             I+           G+Q+H+L  K G++S+++V   L+ MY+  G +  A +V   + E
Sbjct: 349 PCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKE 408

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D+VSW S++ G   H   ++A+  F++MQK  I PD       +S C     + +GLQ 
Sbjct: 409 KDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQI 468

Query: 185 ----YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
               Y      D S+       + A+V L  R G + EA
Sbjct: 469 HARIYVSGYSGDVSI-------WNALVNLYARCGRIREA 500



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 49/100 (49%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           ++HA     G      V N L+ +Y+  G +  A +VF  +  RD VSW ++L G A +G
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              EA+ L+ QM +  + P       VLS+C  A    +G
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG 162



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 4/171 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S  D +  +S +  RN++SWN II      G G +AL  F +M++ GI  + 
Sbjct: 589 ISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPND 648

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T   ++ A   +   +EG     ++  + G          ++ ++   G ++ A K   
Sbjct: 649 VTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIE 708

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            M    D + W +LL  C  H      V  F      E++P  +   V+LS
Sbjct: 709 EMPIAADAMVWRTLLSACKVH--KNIEVGEFAAKHLLELEPHDSASYVLLS 757


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 125/304 (41%), Positives = 185/304 (60%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C        ++ +++ +  +SWNA+I G+   G   +A+  F +M+   I  D 
Sbjct: 419 ISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDS 478

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ A+  +S   + K +H L+ +   D NVFV   LV MYA CGA++ A K+F  
Sbjct: 479 FTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDM 538

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           MDER + +WN+++ G   HG  + A++LFE+M+K  IKP+  TFL VLSAC H+G +++G
Sbjct: 539 MDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEG 598

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            QYF  M+ D  LEP   +HY A+V LLGRA  LNEA  FI  M   P  SV+ A+L AC
Sbjct: 599 FQYFGSMKKDYGLEPA-MDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGAC 657

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N E+  ++A R+ DL P+D   +VLL+N+      WD    +RT M  +GI+K PG
Sbjct: 658 RIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPG 717

Query: 303 YSWV 306
           +S V
Sbjct: 718 WSVV 721



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 95/177 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    +   ++  +  R+ + WN II+G+   G G+ AL+    M++ G   D  TI
Sbjct: 220 YAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITI 279

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A+  +   + G+ +H    + G++S V V   LV MY+ CG++  A  +F  M  
Sbjct: 280 VSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTG 339

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + +VSWNS++ G   +G    A+++F++M   +++    T +  L AC   G +++G
Sbjct: 340 KTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQG 396



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 135/275 (49%), Gaps = 5/275 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S    + ++  +  +  +SWN++I G+   G    A++ F +M    +++   T+
Sbjct: 321 YSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTV 380

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              + A   +   ++G+ +H L+ ++   S+V V N L+ MY+ C  ++ A ++F ++  
Sbjct: 381 MGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQH 440

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           + LVSWN+++LG A +G   EA+  F +MQ   IKPD  T + V+ A      + +  ++
Sbjct: 441 KTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQA-KW 499

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            + +     L+       TA+V +  + G ++ A    + M      + + A++     H
Sbjct: 500 IHGLVIRTCLD-KNVFVATALVDMYAKCGAVHTARKLFDMMDER-HVTTWNAMIDGYGTH 557

Query: 246 GNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
           G  + A+   +++    + PN+     +LS  S +
Sbjct: 558 GLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHS 592



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 105/211 (49%), Gaps = 4/211 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  +    ++ ++ G+    S + A+  F  MR  G+    +  T ++   G  + 
Sbjct: 131 VFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNAD 190

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            ++GK++H  +   G+ SNVF    +V MYA C  + +A K+F  M ERDLV WN+++ G
Sbjct: 191 LRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISG 250

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLE 196
            A +G+ + A++L  +MQ+   +PD  T + +L A    G +  G   + Y MR  A  E
Sbjct: 251 YAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMR--AGFE 308

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
                  TA+V +  + G +  A    + M+
Sbjct: 309 -SFVNVSTALVDMYSKCGSVGTARLIFDRMT 338


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 125/304 (41%), Positives = 185/304 (60%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y+RC  S +  + + ++  +  I+WN +I+GF   G  E+ALK F +M QAG   + 
Sbjct: 488 VYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNV 547

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S + A   ++  K+GKQ+HA + K GY S   + N L+ +Y  CG+I DA   F  
Sbjct: 548 FTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFE 607

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M +R+ VSWN+++  C+ HG   EA+ LF+QM++  +KP   TF+ VL+AC H G +++G
Sbjct: 608 MTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEG 667

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L YF  M N+  +  PR +HY  +V +LGRAG L+ A+ F+  M       V++ LLSAC
Sbjct: 668 LCYFKSMSNEHGIH-PRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSAC 726

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH N EI   +AK +L+L P+D A YVLLSN    T  W     IR +M +RG+RK+PG
Sbjct: 727 KVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPG 786

Query: 303 YSWV 306
            SW+
Sbjct: 787 RSWI 790



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 119/215 (55%), Gaps = 4/215 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ +SW A+++G+   G GE+A++ + EM ++G+    + ++SI+ A    
Sbjct: 97  RRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKT 156

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             F+ G+ +H  ++K G+ S  FV N L+ +Y  C +   A++VF  M   D V++N+L+
Sbjct: 157 ELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLI 216

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G A  G+   A+ +F++MQ + + PD  T   +L+AC   G + KG Q + YL++   S
Sbjct: 217 SGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMS 276

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
           L+        +++ L  ++G + EA    +S  R 
Sbjct: 277 LDYIME---GSLLDLYVKSGDIEEALQIFDSGDRT 308



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 142/291 (48%), Gaps = 7/291 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q +   +  ++ +SW ++IAG+      ++AL+ F EM+  GI  D   + S + A   I
Sbjct: 400 QRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGI 459

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               +G Q+HA ++  GY ++V + N LV++YA CG   +A   F +++ ++ ++WN L+
Sbjct: 460 KAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLI 519

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G A  G   EA+++F +M +   K +  TF+  +SA  +   I +G Q +  +++   +
Sbjct: 520 SGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYT 579

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN--REIAV 252
            E    E   A++ L G+ G + +A+     M++    S +  +++ C  HG     + +
Sbjct: 580 SE---TEISNALISLYGKCGSIEDAKMDFFEMTKRNEVS-WNTIITCCSQHGRGLEALDL 635

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
               +   L P+D     +L+  S      +     +++    GI  +P +
Sbjct: 636 FDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDH 686



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 132/267 (49%), Gaps = 9/267 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC S      V+  +   + +++N +I+G    G G++AL  F EM+ +G+  D 
Sbjct: 185 ISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDS 244

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            TI S++ A   +   ++GKQ+H+ + K G   +  ++  L+ +Y   G I +A ++F S
Sbjct: 245 VTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDS 304

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            D  ++V WN +L+         ++  +F +M    ++P+  T+  +L  C H G I  G
Sbjct: 305 GDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLG 364

Query: 183 LQYFYLMRNDASLEPPRAEHYTA--IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
            Q   L   +      +++ Y +  ++ +  + G+L++A+  ++ +      S + ++++
Sbjct: 365 EQIHSLTIKNGF----QSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVS-WTSMIA 419

Query: 241 ACQVHGNREIAVRSAKRV--LDLWPND 265
               H   + A+ + K +    +WP++
Sbjct: 420 GYVQHEFCKEALETFKEMQACGIWPDN 446



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 122/267 (45%), Gaps = 4/267 (1%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++ S    N + WN ++  +  +    ++   F  M  AG+  + FT   ++       
Sbjct: 300 QIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTG 359

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G+Q+H+L  K G+ S+++V   L+ MY+  G ++ A ++   ++E+D+VSW S++ 
Sbjct: 360 EIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIA 419

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G   H + +EA++ F++MQ   I PD       +SAC     + +G Q     R   S  
Sbjct: 420 GYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIH--ARVYVSGY 477

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
                 +  +V L  R G   EA S   ++    G + +  L+S     G  E A++   
Sbjct: 478 SADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGIT-WNGLISGFAQSGLYEEALKVFM 536

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWD 283
           + +D       ++  +S++S + +  D
Sbjct: 537 K-MDQAGAKYNVFTFVSSISASANLAD 562



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 13/156 (8%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFS-EMRQAGIDIDYFTITSIVGAIGVISGFKEGK- 82
           R   S+N  +AGF      E+ L  F+ + RQ      Y  + ++  A  + +    G+ 
Sbjct: 4   RGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQ------YMVLGAVDFACALRACRGSGRR 57

Query: 83  -----QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
                ++HA     G      + N L+ +YA  G +  A +VF  +  RD VSW ++L G
Sbjct: 58  WPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSG 117

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            A +G   EAV+L+ +M ++ + P       +LSAC
Sbjct: 118 YAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSAC 153


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C       +++  +++R  +SWNA+I GF   G    AL  FS+MR   +  D 
Sbjct: 379 ISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDT 438

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++ AI  +S     K +H ++ +   D NVFV   LV MYA CGAI  A  +F  
Sbjct: 439 FTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDM 498

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER + +WN+++ G   HG+ + A++LFE+MQK  IKP+G TFL V+SAC H+G ++ G
Sbjct: 499 MSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAG 558

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+ FY+M+ + S+E    +HY A+V LLGRAG LNEA  FI  M   P  +VY A+L AC
Sbjct: 559 LKCFYMMKENYSIELS-MDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC 617

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           Q+H N   A ++A+R+ +L P+D   +VLL+N+ +A   W+  G +R  M  +G+RK PG
Sbjct: 618 QIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPG 677

Query: 303 YSWV 306
            S V
Sbjct: 678 CSMV 681



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 96/177 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    + + V+  +  R+ +SWN I+AG+   G    AL+    M +  +   + TI
Sbjct: 180 YAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITI 239

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A+  +     GK++H    + G+DS V +   LV MYA CG++  A ++F  M E
Sbjct: 240 VSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLE 299

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           R++VSWNS++     +   +EA+ +F++M    +KP   + +  L AC   G +++G
Sbjct: 300 RNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 114/224 (50%), Gaps = 8/224 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           + R  S  +   V+  + ++  + ++ ++ GF  +   ++AL+ F  MR   ++   +  
Sbjct: 79  FCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNF 138

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T ++   G  +  + GK++H L+ K G+  ++F    L  MYA C  +N+A KVF  M E
Sbjct: 139 TYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPE 198

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RDLVSWN+++ G + +G +R A+++ + M +  +KP   T + VL A      I  G + 
Sbjct: 199 RDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEI 258

Query: 185 YFYLMRN--DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           + Y MR+  D+ +        TA+V +  + G L  A    + M
Sbjct: 259 HGYAMRSGFDSLVNIS-----TALVDMYAKCGSLETARQLFDGM 297



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 91/167 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S    + ++  +  RN +SWN++I  +    + ++A+  F +M   G+     ++
Sbjct: 281 YAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSV 340

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              + A   +   + G+ +H L  ++G D NV V N L+ MY  C  ++ A  +F  +  
Sbjct: 341 MGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQS 400

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           R LVSWN+++LG A +G   +A+  F QM+   +KPD  T++ V++A
Sbjct: 401 RTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITA 447



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 54/98 (55%)

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S  KE +Q+  L+FK G     F Q +LV ++   G++++A +VF  +D +  V ++++L
Sbjct: 48  SSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTML 107

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            G A      +A+Q F +M+  +++P    F  +L  C
Sbjct: 108 KGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVC 145


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 193/304 (63%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C       ++++++  R  +SWNA+I G+   G   +AL CFSEM+  G+  D 
Sbjct: 391 ISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDS 450

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ A+  +S  +  K +H LI +   D N+FV   LV MY+ CGAI+ A K+F  
Sbjct: 451 FTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDM 510

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + +R +++WN+++ G   HG  R A+ LF++M+K  ++P+  T+L V+SAC H+G +D+G
Sbjct: 511 ISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEG 570

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L++F  M+ D  LE P  +HY A+V LLGRAG + EA  FI +M  +PG +VY A+L AC
Sbjct: 571 LRHFKSMKQDYGLE-PSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGAC 629

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N E+  ++AK++ +L P++   +VLL+N+  +T  W    ++R  M  +G++K PG
Sbjct: 630 KIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPG 689

Query: 303 YSWV 306
            S V
Sbjct: 690 CSVV 693



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 93/177 (52%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   ++  +  R+ +SWN IIAGF   G  ++AL+    M+  G   D  T+
Sbjct: 192 YAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITL 251

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A   +     GK +H    + G+   V +   L  MY+ CG++  A  +F  MD+
Sbjct: 252 VTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQ 311

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + +VSWNS++ G   +G   +A+ +FE+M +  I P G T +  L AC   G +++G
Sbjct: 312 KTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG 368



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 94/167 (56%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S    + ++  +  +  +SWN+++ G+   G  E+A+  F +M + GID    TI
Sbjct: 293 YSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTI 352

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              + A   +   + GK +H  + ++   S++ V N L+ MY+ C  ++ A+ +F++++ 
Sbjct: 353 MEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNG 412

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           R  VSWN+++LG A +G   EA+  F +M+   +KPD  T + V+ A
Sbjct: 413 RTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPA 459



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 91/177 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           +S+  S  +   V+  +  +    ++ ++ G+    S E AL     MR   +    +  
Sbjct: 91  FSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNF 150

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T ++   G  +  K GK++H  +    + +NVF    +V MYA C  I+DA K+F  M E
Sbjct: 151 TYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPE 210

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           RDLVSWN+++ G + +G++++A++L  +MQ    +PD  T + VL A    G +  G
Sbjct: 211 RDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVG 267



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 54/107 (50%)

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  KE  Q+  L+ K G  +    Q +LV +++  G+IN+A +VF  +D++    ++++L
Sbjct: 60  TSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTML 119

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            G A +     A+    +M+  ++KP    F  +L  C     + +G
Sbjct: 120 KGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRG 166


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/301 (41%), Positives = 186/301 (61%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           +  C   +   N+++ +  R+ +SWN IIAGF   G  + A   F  M+++G+  D  T 
Sbjct: 553 FVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITF 612

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T ++ A        EG+++HALI +   D +V V   L+ MY  CG+I+DA+ VF ++ +
Sbjct: 613 TGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPK 672

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++ SW S++ G A HG  +EA++LF QMQ+  +KPD  TF+  LSAC HAG I +GL +
Sbjct: 673 KNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHH 732

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+ D ++E PR EHY  +V L GRAG L+EA  FIN M   P   ++ ALL ACQVH
Sbjct: 733 FESMK-DFNIE-PRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVH 790

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + E+A + A++ L+L PND  +YV+LSN+  A   W +   +R +M +RG+ KKPG SW
Sbjct: 791 LDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSW 850

Query: 306 V 306
           +
Sbjct: 851 I 851



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 101/168 (60%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D   V++ V+ RN +SW A+IAGF   G  E+A   F++M ++GI+ +  T 
Sbjct: 351 YTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTF 410

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+GA    S  K+G+Q+H  I K GY ++  V+  L+ MYA CG++ DA  VF  + +
Sbjct: 411 MSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISK 470

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +++V+WN+++     H     AV  F+ + K  IKPD +TF  +L+ C
Sbjct: 471 QNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVC 518



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 136/250 (54%), Gaps = 7/250 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S +D +NV+  +  +N ++WNA+I  +      + A+  F  + + GI  D  T 
Sbjct: 452 YAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTF 511

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI+         + GK + +LI + G++S++ ++N LV M+  CG +  A  +F+ M E
Sbjct: 512 TSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPE 571

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDLVSWN+++ G   HG ++ A   F+ MQ++ +KPD  TF  +L+AC     + +G + 
Sbjct: 572 RDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRL 631

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYK--ALLSACQ 243
             L+  +A+L+       T ++ +  + G +++A    +++   P  +VY   ++++   
Sbjct: 632 HALI-TEAALDCDVVVG-TGLISMYTKCGSIDDAHLVFHNL---PKKNVYSWTSMITGYA 686

Query: 244 VHGNREIAVR 253
            HG  + A+ 
Sbjct: 687 QHGRGKEALE 696



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 144/281 (51%), Gaps = 9/281 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C ++   + ++  +  ++  SWN ++ G+      E+A +   +M Q G+  D 
Sbjct: 146 ISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDK 205

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T   ++ A        +G ++ +LI   G+D+++FV   L+ M+  CG ++DA KVF++
Sbjct: 206 YTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNN 265

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  RDL++W S++ G A H   ++A  LF+ M++  ++PD   F+ +L AC H   +++G
Sbjct: 266 LPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQG 325

Query: 183 LQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
            +    M+ +  L+    E Y  TA++ +  + G + +A    N + +      + A+++
Sbjct: 326 KRVHARMK-EVGLD---TEIYVGTALLSMYTKCGSMEDALEVFN-LVKGRNVVSWTAMIA 380

Query: 241 ACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKAT 279
               HG  E A     ++++  + PN      +L   S+ +
Sbjct: 381 GFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPS 421



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 146/291 (50%), Gaps = 6/291 (2%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           +C    D   V++++  R+ I+W ++I G       +QA   F  M + G+  D     S
Sbjct: 252 KCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVS 311

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           ++ A       ++GK++HA + ++G D+ ++V   L+ MY  CG++ DA +VF+ +  R+
Sbjct: 312 LLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRN 371

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
           +VSW +++ G A HG   EA   F +M ++ I+P+  TF+ +L AC     + +G Q   
Sbjct: 372 VVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHD 431

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN 247
            +     +   R    TA++ +  + G L +A +    +S+      + A+++A   H  
Sbjct: 432 RIIKAGYITDDRVR--TALLSMYAKCGSLMDARNVFERISKQ-NVVAWNAMITAYVQHEK 488

Query: 248 REIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
            + AV + + +L   + P D + +  + NV K+ D  +    +++L+   G
Sbjct: 489 YDNAVATFQALLKEGIKP-DSSTFTSILNVCKSPDALELGKWVQSLIIRAG 538



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 133/313 (42%), Gaps = 41/313 (13%)

Query: 22  VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG 81
           V  +N    NA +      G   +A+     +    I I   T +S++          +G
Sbjct: 64  VDIKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDG 123

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           +++H  I       ++F+ N L+ MYA CG  N A ++F  M ++D+ SWN LL G   H
Sbjct: 124 ERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQH 183

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN---------- 191
               EA +L EQM +  +KPD  TF+ +L+AC  A  +DKG + F L+ N          
Sbjct: 184 RRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVG 243

Query: 192 -------------DASLEP----PRAE--HYTAIVGLLGRAGFLNEAESFINSMSR---N 229
                        D +L+     PR +   +T+++  L R     +A +    M      
Sbjct: 244 TALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQ 303

Query: 230 PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN---DPAIYVLLSNVSKATDC--WDD 284
           P    + +LL AC    N   A+   KRV         D  IYV  + +S  T C   +D
Sbjct: 304 PDKVAFVSLLKAC----NHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMED 359

Query: 285 AGDIRTLMYNRGI 297
           A ++  L+  R +
Sbjct: 360 ALEVFNLVKGRNV 372



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 7/172 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S  D   V+ ++  +N  SW ++I G+   G G++AL+ F +M+Q G+  D+
Sbjct: 651 ISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDW 710

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T    + A       KEG      +     +  +     +V ++   G +++A +  + 
Sbjct: 711 ITFVGALSACAHAGLIKEGLHHFESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINK 770

Query: 123 MDER-DLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLS 171
           M  + D   W +LL  C  H      V+L E++  +K E+ P+     V+LS
Sbjct: 771 MQVKPDSRLWGALLGACQVH----LDVELAEKVAQKKLELDPNDDGVYVILS 818


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  253 bits (647), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 184/301 (61%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC  S +  +++  +  +++I+WN +I+GF      EQAL  F +M QAG   + FT 
Sbjct: 492 YARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTF 551

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + A+  ++  K+GKQ+H    K G+ S   V N L+ +Y  CG+I DA  +FS M  
Sbjct: 552 ISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSL 611

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWN+++  C+ HG   EA+ LF+QM++  +KP+  TF+ VL+AC H G +++GL Y
Sbjct: 612 RNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSY 671

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M N   L P   +HY  +V +LGRAG L+ A  F++ M       +++ LLSAC+VH
Sbjct: 672 FKSMSNVYGLNPI-PDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVH 730

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N EI   +AK +L+L P+D A YVLLSN    T  W +   +R +M +RGIRK+PG SW
Sbjct: 731 KNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSW 790

Query: 306 V 306
           +
Sbjct: 791 I 791



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 114/231 (49%), Gaps = 3/231 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + +   +  R+ +SW ++IAG+      E+AL  F EM+  G+  D   + S   A   I
Sbjct: 401 RKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGI 460

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              ++G Q+HA ++  GY +++ + N LV +YA CG   +A  +F  +D +D ++WN L+
Sbjct: 461 KAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLI 520

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G        +A+ +F +M +   K +  TF+  +SA  +   I +G Q     R   + 
Sbjct: 521 SGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVH--GRAVKTG 578

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
                E   A++ L G+ G + +A+   + MS     S +  ++++C  HG
Sbjct: 579 HTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS-WNTIITSCSQHG 628



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 104/182 (57%), Gaps = 1/182 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  + +R+ +SW A+++G+   G G++A + +S+M    +    + ++S++ A    
Sbjct: 98  RQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKG 157

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             F +G+ +HA ++K  + S  FV N L+ +Y   G+   A +VF  M   D V++N+L+
Sbjct: 158 KLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLI 217

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G A  G+   A+Q+F++MQ + ++PD  T   +L+AC   G + KG Q + YL++   S
Sbjct: 218 SGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMS 277

Query: 195 LE 196
            +
Sbjct: 278 FD 279



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 92/173 (53%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +   +++++N +I+G    G GE AL+ F EM+ +G+  D  T+ S++ A   +
Sbjct: 199 ERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASV 258

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              ++GKQ+H+ + K G   +   +  L+ +Y  CG I  A+ +F+  D  ++V WN +L
Sbjct: 259 GDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLML 318

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL 188
           +         ++ ++F QMQ T I P+  T+  +L  C   G I+ G Q   L
Sbjct: 319 VAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSL 371



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 90/179 (50%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C       ++++     N + WN ++  +  +    ++ + F +M+  GI  + FT 
Sbjct: 290 YVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTY 349

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             I+         + G+Q+H+L  K G++S+++V   L+ MY+    ++ A K+   +++
Sbjct: 350 PCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEK 409

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           RD+VSW S++ G   H +  EA+  F++MQ   + PD        SAC     + +GLQ
Sbjct: 410 RDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQ 468



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           ++HA     G  ++  + N L+ +YA  G +  A +VF  +  RD VSW ++L G A  G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             +EA +L+ QM  T + P       VLSAC       +G
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQG 163



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 20/179 (11%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S  D + ++S +  RN++SWN II      G G +AL  F +M+Q G+  + 
Sbjct: 590 ISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPND 649

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA----ICGAINDANK 118
            T   ++ A   +   +EG      +      SNV+  N +   YA    I G     ++
Sbjct: 650 VTFIGVLAACSHVGLVEEGLSYFKSM------SNVYGLNPIPDHYACVVDILGRAGQLDR 703

Query: 119 VFSSMDERDLVS----WNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLS 171
               +DE  + +    W +LL  C  H    + +++ E   K   E++P  +   V+LS
Sbjct: 704 ARRFVDEMPITANAMIWRTLLSACKVH----KNIEIGELAAKHLLELEPHDSASYVLLS 758


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  253 bits (645), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 121/301 (40%), Positives = 184/301 (61%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +      ++  +  +N ++WNAII+G+   G   +AL  F EM+  GI  D F I
Sbjct: 367 YAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAI 426

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A       ++GKQ+H    + G++SNV V   LV +YA CG +N A K+F  M E
Sbjct: 427 VSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPE 486

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+VSW +++L    HG+  +A+ LF +MQ+T  K D   F  +L+AC HAG +D+GLQY
Sbjct: 487 QDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQY 546

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M++D  L  P+ EHY  +V LLGRAG L+EA   I +MS  P  +V+ ALL AC++H
Sbjct: 547 FQCMKSDYGL-APKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIH 605

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+  ++AK + +L P++   YVLLSN+      W+D   +R +M  +G++K+PG S 
Sbjct: 606 CNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSV 665

Query: 306 V 306
           V
Sbjct: 666 V 666



 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/248 (32%), Positives = 131/248 (52%), Gaps = 5/248 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  + + V+  +  R+ +SWNAIIAG+   G   +AL  FSEM+  GI  +  T+
Sbjct: 165 YTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTL 224

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++     +   ++GKQ+H    + G +S+V V N LV MYA CG +N A+K+F  M  
Sbjct: 225 VSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPI 284

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RD+ SWN+++ G + +    EA+  F +MQ   IKP+  T + VL AC H   +++G Q 
Sbjct: 285 RDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQI 344

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + Y +R+             A+V +  + G +N A      M +      + A++S    
Sbjct: 345 HGYAIRSGFESNDVVG---NALVNMYAKCGNVNSAYKLFERMPKK-NVVAWNAIISGYSQ 400

Query: 245 HGNREIAV 252
           HG+   A+
Sbjct: 401 HGHPHEAL 408



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 131/248 (52%), Gaps = 5/248 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +      ++  +  R+  SWNAII G+       +AL  F+ M+  GI  +  T+
Sbjct: 266 YAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITM 325

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +   ++G+Q+H    + G++SN  V N LV MYA CG +N A K+F  M +
Sbjct: 326 VSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPK 385

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +++V+WN+++ G + HG+  EA+ LF +MQ   IKPD    + VL AC H   +++G Q 
Sbjct: 386 KNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQI 445

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + Y +R+            T +V +  + G +N A+     M      S +  ++ A  +
Sbjct: 446 HGYTIRSGFESNVVVG---TGLVDIYAKCGNVNTAQKLFERMPEQDVVS-WTTMILAYGI 501

Query: 245 HGNREIAV 252
           HG+ E A+
Sbjct: 502 HGHGEDAL 509



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 107/202 (52%), Gaps = 4/202 (1%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N + W   I G+   G   +AL+ + +M++ GI+ D     S++ A G  S  + G+++H
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
             I   G++S+V V   L  MY  CG++ +A +VF  M +RD+VSWN+++ G + +G   
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYT 204
           EA+ LF +MQ   IKP+ +T + V+  C H   +++G Q + Y +R+    +        
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVV---N 260

Query: 205 AIVGLLGRAGFLNEAESFINSM 226
            +V +  + G +N A      M
Sbjct: 261 GLVNMYAKCGNVNTAHKLFERM 282


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 125/293 (42%), Positives = 182/293 (62%), Gaps = 2/293 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + V+  +  R+ +SW AII+ +   G GE AL  F +M   GI  +  T+TS++ A G
Sbjct: 639 DARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACG 698

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +   K G+Q HALIFK+G+D+ +FV N L+ MY  CG   D   VF  M E DL++WN+
Sbjct: 699 NLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNA 757

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           +L+GCA +G  +EA+++FEQM+   I PD  +FL VL AC HAG +D+G  +F  M    
Sbjct: 758 VLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKY 817

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            + P    HYT +V LLGRAG+L+EAE+ I +M   P   +++ALL AC++H N E+  R
Sbjct: 818 GIMP-LVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQR 876

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            A+R+  +     A YVLLSN+  +   WD   +IR LM ++G+ K+PG SW+
Sbjct: 877 VAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWI 929



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 6/207 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++++  +  +N  SW A+IAGF       +AL+   E+ ++G      + TS + A   I
Sbjct: 509 KDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANI 568

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G+ +H+L  K G   N +V N L+ MYA CG + D + VF ++  +D VSWNSL+
Sbjct: 569 GDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLI 628

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G + +    +A  +FE+M K ++     ++  ++SA   AG  +  L  F  M   A  
Sbjct: 629 SGLSENYMLDDARVVFEKMPKRDV----VSWTAIISAYVQAGHGEVALDLFLDML--ARG 682

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESF 222
             P     T+++   G  G +   E F
Sbjct: 683 IKPNQLTVTSLLSACGNLGAIKLGEQF 709



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 89/178 (50%), Gaps = 10/178 (5%)

Query: 6   YSRCDSSLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y+R + SLD   + + ++  RN+ SW  +IA F   G  + A++ +  + +  +     T
Sbjct: 406 YTR-NGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA----T 460

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            T+++ A   +   ++ +    LIF    + NV   N ++  Y   G + +A  +F  M 
Sbjct: 461 KTAMMTAYAQVGRIQKAR----LIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMP 516

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            ++  SW +++ G   +  SREA++L  ++ ++   P  ++F   LSAC + G ++ G
Sbjct: 517 VKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIG 574



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 10/221 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C    + + ++  +  RN +SW  +I+G+ ++    +A   F +M +     D    
Sbjct: 305 YCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIF 364

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ AI  +   +    +  +  K GY+ +V V + ++  Y   G+++ A   F +M E
Sbjct: 365 VVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPE 424

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+  SW +++   A  G   +A+QL+E++ +  +     T   +++A    G I K    
Sbjct: 425 RNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV----ATKTAMMTAYAQVGRIQKARLI 480

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           F  + N      P    + AI+    + G L EA+     M
Sbjct: 481 FDEILN------PNVVAWNAIIAGYTQNGMLKEAKDLFQKM 515



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 39/157 (24%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+ S+  RN +SWNA+I+G+   G  + A K F EM +                    
Sbjct: 253 REVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPE-------------------- 292

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                               NV   N +V  Y  C  +++A ++F  M ER+ VSW  ++
Sbjct: 293 -------------------KNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMI 333

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            G  H     EA  +F +M +T  +PD + F+VVLSA
Sbjct: 334 SGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSA 370



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 18/168 (10%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE-GKQMHA-LI 88
           N  I     LG  E+A + F+EM Q            +V    +I+G+ + GK   A L+
Sbjct: 175 NTRIQELGRLGRVEEARRVFNEMIQ----------RDVVSWNSMINGYSQNGKVDEARLL 224

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
           F      N+     L+  YA  G I +A +VF SM ER++VSWN+++ G   +G  + A 
Sbjct: 225 FDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNAR 284

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDAS 194
           +LF++M +  +     ++  V++  CH   + +  + F  M  RN  S
Sbjct: 285 KLFDEMPEKNV----ASWNSVVTGYCHCYRMSEARELFDQMPERNSVS 328


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/304 (41%), Positives = 184/304 (60%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C       +++  +++R  +SWNA+I GF   G   +AL  FS+M+   +  D 
Sbjct: 379 ISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDT 438

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++ AI  +S     K +H ++ +   D NVFV   LV MYA CGAI  A  +F  
Sbjct: 439 FTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDM 498

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER + +WN+++ G   HG  + A++LFE+MQK  I+P+G TFL V+SAC H+G ++ G
Sbjct: 499 MSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAG 558

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+ F++M+ + S+EP   +HY A+V LLGRAG LNEA  FI  M   P  +VY A+L AC
Sbjct: 559 LKCFHMMKENYSIEPS-MDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC 617

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           Q+H N   A + A+R+ +L P D   +VLL+N+ +A   W+  G +R  M  +G+RK PG
Sbjct: 618 QIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPG 677

Query: 303 YSWV 306
            S V
Sbjct: 678 CSMV 681



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 97/177 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    + + V+  +  R+ +SWN I+AG+   G    AL+  + M +  +   + TI
Sbjct: 180 YAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITI 239

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A+  +   + GK++H    + G+DS V +   LV MYA CG++  A  +F  M E
Sbjct: 240 VSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLE 299

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           R++VSWNS++     +   +EA+ +F++M    +KP   + +  L AC   G +++G
Sbjct: 300 RNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 90/167 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S    + ++  +  RN +SWN++I  +    + ++A+  F +M   G+     ++
Sbjct: 281 YAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSV 340

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              + A   +   + G+ +H L  ++  D NV V N L+ MY  C  ++ A  +F  +  
Sbjct: 341 MGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQS 400

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           R +VSWN+++LG A +G   EA+  F QMQ   +KPD  T++ V++A
Sbjct: 401 RTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITA 447



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 8/224 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           + R  S  +   V+  +  +  + +  ++ GF  +   ++ALK F  MR   ++   +  
Sbjct: 79  FCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNF 138

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T ++   G  +  + GK++H L+ K G+  ++F    L  MYA C  +++A KVF  M E
Sbjct: 139 TYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPE 198

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RDLVSWN+++ G + +G +R A+++   M +  +KP   T + VL A      I  G + 
Sbjct: 199 RDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEI 258

Query: 185 YFYLMRN--DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           + Y MR   D+ +        TA+V +  + G L  A    + M
Sbjct: 259 HGYAMRAGFDSLVNIA-----TALVDMYAKCGSLKTARLLFDGM 297



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 52/98 (53%)

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S  KE + +  LIFK G       Q +LV ++   G++++A +VF  +D++  V + ++L
Sbjct: 48  SSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTML 107

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            G A      +A++ F +M+  E++P    F  +L  C
Sbjct: 108 KGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVC 145


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/301 (40%), Positives = 184/301 (61%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC  S +  +++  +  +++I+WN +I+GF      +QAL  F +M QAG   + FT 
Sbjct: 492 YARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTF 551

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + A+  ++  K+GKQ+H    K G+ S   V N L+ +Y  CG+I DA  +FS M  
Sbjct: 552 ISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSL 611

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWN+++  C+ HG   EA+ LF+QM++  +KP+  TF+ VL+AC H G +++GL Y
Sbjct: 612 RNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSY 671

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M N   L P   +HY  +V +LGRAG L+ A  F++ M       +++ LLSAC+VH
Sbjct: 672 FKSMSNVYGLNPI-PDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVH 730

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N EI   +AK +L+L P+D A YVLLSN    T  W +   +R +M +RGIRK+PG SW
Sbjct: 731 KNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSW 790

Query: 306 V 306
           +
Sbjct: 791 I 791



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 104/182 (57%), Gaps = 1/182 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  + +R+ +SW A+++G+   G G++A + +S+M    +    + ++S++ A    
Sbjct: 98  RQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKG 157

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             F +G+ +HA ++K  + S  FV N L+ +Y   G+   A +VF  M   D V++N+L+
Sbjct: 158 KLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLI 217

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G A  G+   A+Q+F++MQ + ++PD  T   +L+AC   G + KG Q + YL++   S
Sbjct: 218 SGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMS 277

Query: 195 LE 196
            +
Sbjct: 278 FD 279



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 126/263 (47%), Gaps = 5/263 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + +   +  R+ +SW ++IAG+      E+AL  F EM+  G+  D   + S   A   I
Sbjct: 401 RKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGI 460

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              ++G Q+HA ++  GY +++ + N LV +YA CG   +A  +F  ++ +D ++WN L+
Sbjct: 461 KAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLI 520

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G       ++A+ +F +M +   K +  TF+  +SA  +   I +G Q     R   + 
Sbjct: 521 SGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVH--GRAVKTG 578

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN--REIAVR 253
                E   A++ L G+ G + +A+   + MS     S +  ++++C  HG     + + 
Sbjct: 579 HTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS-WNTIITSCSQHGRGLEALDLF 637

Query: 254 SAKRVLDLWPNDPAIYVLLSNVS 276
              +   L PND     +L+  S
Sbjct: 638 DQMKQEGLKPNDVTFIGVLAACS 660



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 128/254 (50%), Gaps = 9/254 (3%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +   +++++N +I+G    G GE AL+ F EM+ +G+  D  T+ S++ A   +
Sbjct: 199 ERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASV 258

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              ++GKQ+H+ + K G   +   +  L+ +Y  CG I  A+ +F+  D  ++V WN +L
Sbjct: 259 GDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLML 318

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           +         ++ ++F QMQ T I P+  T+  +L  C   G I+ G Q   L   +   
Sbjct: 319 VAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGF- 377

Query: 196 EPPRAEHYTA--IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
               ++ Y +  ++ +  + G L++A   +  + +    S + ++++    H   E A+ 
Sbjct: 378 ---ESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVS-WTSMIAGYVQHDFCEEALA 433

Query: 254 SAKRVLD--LWPND 265
           + K + D  +WP++
Sbjct: 434 TFKEMQDCGVWPDN 447



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 2/224 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C       ++++     N + WN ++  +  +    ++ + F +M+  GI  + FT 
Sbjct: 290 YVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTY 349

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             I+         + G+Q+H+L  K G++S+++V   L+ MY+  G ++ A K+   +++
Sbjct: 350 PCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEK 409

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSW S++ G   H +  EA+  F++MQ   + PD        SAC     + +GLQ 
Sbjct: 410 RDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQI 469

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
               R   S        +  +V L  R G   EA S    +   
Sbjct: 470 H--ARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHK 511



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           ++HA     G  ++  + N L+ +YA  G +  A +VF  +  RD VSW ++L G A  G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             +EA +L+ QM  T + P       VLSAC       +G
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQG 163



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 20/179 (11%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S  D + ++S +  RN++SWN II      G G +AL  F +M+Q G+  + 
Sbjct: 590 ISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPND 649

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA----ICGAINDANK 118
            T   ++ A   +   +EG      +      SNV+  N +   YA    I G     ++
Sbjct: 650 VTFIGVLAACSHVGLVEEGLSYFKSM------SNVYGLNPIPDHYACVVDILGRAGQLDR 703

Query: 119 VFSSMDERDLVS----WNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLS 171
               +DE  + +    W +LL  C  H    + +++ E   K   E++P  +   V+LS
Sbjct: 704 ARRFVDEMPITANAMIWRTLLSACKVH----KNIEIGELAAKHLLELEPHDSASYVLLS 758


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 191/304 (62%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C       ++++++  R  +SWNA+I G+   G   +AL CFSEM+  G+  D 
Sbjct: 391 ISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDS 450

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ A+  +S  +  K +H LI +   D N+FV   LV MY+ CGAI+ A K+F  
Sbjct: 451 FTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDM 510

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + +R +++WN+++ G   HG  R A+ LF++M+K  ++P+  T+L V+SAC H+G +D+G
Sbjct: 511 ISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEG 570

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L++F  M+ D  LE P  +HY A+V LLGRAG + EA  FI +M  +PG +VY A   AC
Sbjct: 571 LRHFKSMKQDYGLE-PSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGAC 629

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N E+  ++AK++ +L P++   +VLL+N+  +T  W    ++R  M  +G++K PG
Sbjct: 630 KIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPG 689

Query: 303 YSWV 306
            S V
Sbjct: 690 CSVV 693



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 93/177 (52%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   ++  +  R+ +SWN IIAGF   G  ++AL+    M+  G   D  T+
Sbjct: 192 YAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITL 251

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A   +     GK +H    + G+   V +   L  MY+ CG++  A  +F  MD+
Sbjct: 252 VTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQ 311

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + +VSWNS++ G   +G   +A+ +FE+M +  I P G T +  L AC   G +++G
Sbjct: 312 KTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG 368



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 94/167 (56%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S    + ++  +  +  +SWN+++ G+   G  E+A+  F +M + GID    TI
Sbjct: 293 YSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTI 352

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              + A   +   + GK +H  + ++   S++ V N L+ MY+ C  ++ A+ +F++++ 
Sbjct: 353 MEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNG 412

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           R  VSWN+++LG A +G   EA+  F +M+   +KPD  T + V+ A
Sbjct: 413 RTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPA 459



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 91/177 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           +S+  S  +   V+  +  +    ++ ++ G+    S E AL     MR   +    +  
Sbjct: 91  FSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNF 150

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T ++   G  +  K GK++H  +    + +NVF    +V MYA C  I+DA K+F  M E
Sbjct: 151 TYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPE 210

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           RDLVSWN+++ G + +G++++A++L  +MQ    +PD  T + VL A    G +  G
Sbjct: 211 RDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVG 267



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 54/107 (50%)

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  KE  Q+  L+ K G  +    Q +LV +++  G+IN+A +VF  +D++    ++++L
Sbjct: 60  TSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTML 119

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            G A +     A+    +M+  ++KP    F  +L  C     + +G
Sbjct: 120 KGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRG 166


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/304 (41%), Positives = 193/304 (63%), Gaps = 3/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSR     +   V+  + T + + W++IIAGF     G++AL+ F  M++AG     
Sbjct: 105 IDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQ 164

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+TS++ A   ++  + G+Q+H  + K  YD ++ + N L+ MY  CG++ DAN VF  
Sbjct: 165 TTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVR 222

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E+D++SW++++ G A +GYS+EA++LFE M+   IKP+  T + VL AC HAG +++G
Sbjct: 223 MVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEG 282

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L YF+ M+    ++P R EHY  ++ LLGRAG L+EA   IN M   P    ++ALL+AC
Sbjct: 283 LYYFHSMKELFGIDPGR-EHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNAC 341

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH N ++A+ +AK++L L P D   YVLLSN+   T  W+D  ++R  M NRGI+K+PG
Sbjct: 342 RVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPG 401

Query: 303 YSWV 306
            SW+
Sbjct: 402 CSWI 405



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 135/268 (50%), Gaps = 12/268 (4%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D Q+V+  +  RN +SW  +I+ +      ++AL+    M + G+  + FT +S++ A  
Sbjct: 18  DAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRAC- 76

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
              G    +Q+H  I KIG DS+VFV++ L+ +Y+  G + +A +VF  M   DLV W+S
Sbjct: 77  --DGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSS 134

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
           ++ G A +    EA++LF++M++       TT   VL AC     ++ G Q + ++++ D
Sbjct: 135 IIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYD 194

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
             L         A++ +  + G L +A +    M      S +  +++    +G  + A+
Sbjct: 195 QDLILN-----NALLDMYCKCGSLEDANAVFVRMVEKDVIS-WSTMIAGLAQNGYSKEAL 248

Query: 253 R--SAKRVLDLWPNDPAIYVLLSNVSKA 278
           +   + +VL + PN   I  +L   S A
Sbjct: 249 KLFESMKVLGIKPNYVTIVGVLFACSHA 276



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 43/76 (56%)

Query: 98  FVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157
           F+ N L+ MY   G ++DA  VF  M +R++VSW +++   +    + +A++    M + 
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 158 EIKPDGTTFLVVLSAC 173
            ++P+  T+  VL AC
Sbjct: 61  GVRPNMFTYSSVLRAC 76


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 185/304 (60%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C    + +N++  +  R+ +SW A+IAG+   G   +AL+ F  M + G  ++ 
Sbjct: 345 ITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNR 404

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            + +S +     +   + GKQ+H  + K GY++  FV N L+ MY  CG+I +AN +F  
Sbjct: 405 SSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKE 464

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  +D+VSWN+++ G + HG+  EA++ FE M++  +KPD  T + VLSAC H G +DKG
Sbjct: 465 MAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKG 524

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            QYF+ M  D  +  P ++HY  +V LLGRAG L EA + + +M   P  +++  LL A 
Sbjct: 525 RQYFHTMTQDYGVR-PNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGAS 583

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN E+A  +A ++  + P +  +YVLLSN+  ++  W D G +R  M ++G++K PG
Sbjct: 584 RVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPG 643

Query: 303 YSWV 306
           YSW+
Sbjct: 644 YSWI 647



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 122/293 (41%), Gaps = 63/293 (21%)

Query: 13  LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           ++ +  + S++ R+ +SWN II G+   G  ++A + F E        D FT T++V   
Sbjct: 231 VEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVH----DVFTWTAMVSGY 286

Query: 73  -------------------------GVISGFKEGK--QMHALIFKIGYDSNVFVQNRLVF 105
                                     +++G+ +G+  +M   +F +    NV   N ++ 
Sbjct: 287 IQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMIT 346

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
            YA CG I++A  +F  M +RD VSW +++ G +  G+S EA++LF  M++   + + ++
Sbjct: 347 GYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSS 406

Query: 166 FLVVLSACCHAGFIDKGLQY------------------FYLM---------RNDASLEPP 198
           F   LS C     ++ G Q                     LM          ND   E  
Sbjct: 407 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA 466

Query: 199 RAE--HYTAIVGLLGRAGFLNEAESFINSMSR---NPGPSVYKALLSACQVHG 246
             +   +  ++    R GF  EA  F  SM R    P  +   A+LSAC   G
Sbjct: 467 GKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTG 519



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 20/174 (11%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           RC  +L    V+  +   + +S+NA+I+G+   G  E A   F EM +  +      ++ 
Sbjct: 74  RCSEAL---RVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDL------VSW 124

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
            V   G +     GK     +F+   + +V   N ++  YA  G ++DA +VF  M E++
Sbjct: 125 NVMIKGYVRNRNLGKARE--LFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKN 182

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            VSWN+LL     +    EA  LF   +          + +V   C   GF+ K
Sbjct: 183 DVSWNALLSAYVQNSKLEEACVLFGSRE---------NWALVSWNCLLGGFVKK 227



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 18/183 (9%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R+  SWN I++G+   G  + A + F  M +   D+ +  +         +
Sbjct: 141 RELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKN-DVSWNAL---------L 190

Query: 76  SGFKEGKQMHALIFKIGYDSN--VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           S + +  ++       G   N  +   N L+  +     I +A + F SM  RD+VSWN+
Sbjct: 191 SAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNT 250

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RN 191
           ++ G A +G   EA QLF++    ++     T+  ++S       +++  + F  M  RN
Sbjct: 251 IITGYAQNGEIDEARQLFDESPVHDV----FTWTAMVSGYIQNRMVEEARELFDRMPERN 306

Query: 192 DAS 194
           + S
Sbjct: 307 EVS 309



 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 7/126 (5%)

Query: 72  IGVISGFKEGKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
           + + S  + G+   AL +FK     +    N ++  Y   G    A  +F  M ERDLVS
Sbjct: 64  VAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVS 123

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM- 189
           WN ++ G   +    +A +LFE+M + ++     ++  +LS     G +D   + F  M 
Sbjct: 124 WNVMIKGYVRNRNLGKARELFERMPERDV----CSWNTILSGYAQNGCVDDARRVFDRMP 179

Query: 190 -RNDAS 194
            +ND S
Sbjct: 180 EKNDVS 185


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 128/302 (42%), Positives = 180/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC S ++ QNV+   + R+ ISWN++IAG    GS E A K F EM+   ++ D  T 
Sbjct: 476 YRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITF 535

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++         + GKQ+H  I + G   +V + N L+ MY  CG++ DA  VF S+  
Sbjct: 536 ASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQH 595

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK-PDGTTFLVVLSACCHAGFIDKGLQ 184
           RD++SW +++ GCA  G   +A++LF QMQ    + PDG+TF  +LSAC HAG + +G Q
Sbjct: 596 RDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQ 655

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M ++  + P   EHY  +VGLLGRA    EAE+ IN M   P  +V++ LL AC++
Sbjct: 656 IFSSMESEYGVLPT-IEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRI 714

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN  +A  +A   L L   +PA+Y+LLSNV  A   WDD   IR +M  RGIRK+PG S
Sbjct: 715 HGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRS 774

Query: 305 WV 306
           W+
Sbjct: 775 WI 776



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 128/247 (51%), Gaps = 3/247 (1%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           L I  Y +C S LD   V+  +  R+ ISWN++I+ +   G  ++A + F EM+ AG   
Sbjct: 67  LLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIP 126

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           +  T  SI+ A    +  + GK++H+ I K GY  +  VQN L+ MY  CG +  A +VF
Sbjct: 127 NKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVF 186

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           + +  RD+VS+N++L   A   Y +E + LF QM    I PD  T++ +L A      +D
Sbjct: 187 AGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLD 246

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +G +   L   +      R    TA+V +  R G ++ A+     ++ +    VY AL++
Sbjct: 247 EGKRIHKLTVEEGLNSDIRVG--TALVTMCVRCGDVDSAKQAFKGIA-DRDVVVYNALIA 303

Query: 241 ACQVHGN 247
           A   HG+
Sbjct: 304 ALAQHGH 310



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 124/261 (47%), Gaps = 25/261 (9%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+RC      + ++ ++  R+ ISWNAIIAG+       +A++ + +M+  G+    
Sbjct: 372 ISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGR 431

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   ++ A    S + +GK +H  I + G  SN  + N L+ MY  CG++ +A  VF  
Sbjct: 432 VTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEG 491

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--------- 173
              RD++SWNS++ G A HG    A +LF++MQ  E++PD  TF  VLS C         
Sbjct: 492 TQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELG 551

Query: 174 --CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPG 231
              H    + GLQ    + N             A++ +  R G L +A +  +S+     
Sbjct: 552 KQIHGRITESGLQLDVNLGN-------------ALINMYIRCGSLQDARNVFHSLQHRDV 598

Query: 232 PSVYKALLSACQVHGNREIAV 252
            S + A++  C   G    A+
Sbjct: 599 MS-WTAMIGGCADQGEDMKAI 618



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 131/248 (52%), Gaps = 7/248 (2%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           RC      +  +  +  R+ + +NA+IA     G   +A + +  MR  G+ ++  T  S
Sbjct: 276 RCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLS 335

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           I+ A       + GK +H+ I + G+ S+V + N L+ MYA CG +  A ++F +M +RD
Sbjct: 336 ILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRD 395

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH-AGFIDKGLQYF 186
           L+SWN+++ G A      EA++L++QMQ   +KP   TFL +LSAC + + + D  + + 
Sbjct: 396 LISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHE 455

Query: 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES-FINSMSRNPGPSVYKALLSACQVH 245
            ++R+        A    A++ +  R G L EA++ F  + +R+     + ++++    H
Sbjct: 456 DILRSGIKSNGHLA---NALMNMYRRCGSLMEAQNVFEGTQARD--VISWNSMIAGHAQH 510

Query: 246 GNREIAVR 253
           G+ E A +
Sbjct: 511 GSYETAYK 518



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + V++ +  R+ +S+N ++  +      ++ L  F +M   GI  D  T 
Sbjct: 173 YGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTY 232

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A    S   EGK++H L  + G +S++ V   LV M   CG ++ A + F  + +
Sbjct: 233 INLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIAD 292

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           RD+V +N+L+   A HG++ EA + + +M+   +  + TT+L +L+AC  +  ++ G L 
Sbjct: 293 RDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLI 352

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
           + ++  +  S +    +   A++ +  R G L +A     +M +
Sbjct: 353 HSHISEDGHSSD---VQIGNALISMYARCGDLPKARELFYTMPK 393



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 2/150 (1%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             E K++HA + + G   ++F+ N L+ MY  C ++ DA++VF  M  RD++SWNSL+  
Sbjct: 43  LPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISC 102

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A  G+ ++A QLFE+MQ     P+  T++ +L+AC     ++ G +    +        
Sbjct: 103 YAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRD 162

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
           PR ++  +++ + G+ G L  A      +S
Sbjct: 163 PRVQN--SLLSMYGKCGDLPRARQVFAGIS 190


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/302 (39%), Positives = 186/302 (61%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C    +   +++    RN ++WN +I G   LG GE+AL+ F  M +  +     T
Sbjct: 182 VYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVT 241

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +S + A   ++  + G Q+H+L  K  +D ++ V N L+ MYA CG+I DA  VF  M+
Sbjct: 242 YSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMN 301

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++D VSWN+++ G + HG  REA+++F++MQ+TE+KPD  TF+ VLSAC +AG +D+G  
Sbjct: 302 KQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQA 361

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF  M  D  +EP   EHYT +V LLGR G L++A   I+ +   P   V++ALL AC +
Sbjct: 362 YFTSMIQDHGIEPC-IEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVI 420

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H + E+   SA+RVL++ P D A +VLLSN+      WD+   +R  M  +G++K+PG S
Sbjct: 421 HNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLS 480

Query: 305 WV 306
           W+
Sbjct: 481 WI 482



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 123/255 (48%), Gaps = 8/255 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y + D   D   ++  +  RN IS+  +I G+       +A++ F  + +  +  + FT 
Sbjct: 83  YVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREVLP-NQFTF 141

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   + G   G Q+H  + KIG  S+VFV N L+ +YA CG + ++ ++F+    
Sbjct: 142 ASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPH 201

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ V+WN++++G    G   +A++LF  M +  ++    T+   L AC     ++ GLQ 
Sbjct: 202 RNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQI 261

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             L       +     +  A++ +  + G + +A    + M++    S + A++S   +H
Sbjct: 262 HSLTVKTTFDKDIVVTN--ALIDMYAKCGSIKDARLVFDLMNKQDEVS-WNAMISGYSMH 318

Query: 246 GNREIAVRSAKRVLD 260
           G      R A R+ D
Sbjct: 319 G----LGREALRIFD 329



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK +H  I K G   ++F  N L+ MY     + DA+K+F  M ER+ +S+ +L+ G A 
Sbjct: 57  GKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAE 116

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
                EA++LF ++ + E+ P+  TF  VL AC
Sbjct: 117 SVRFLEAIELFVRLHR-EVLPNQFTFASVLQAC 148


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  250 bits (639), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 183/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC    +  + +  +  ++ I+ N +++GF   G  E+ALK F  M Q+G+  + FT 
Sbjct: 491 YARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTF 550

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + A   ++  K+GKQ+HA + K G+     V N L+ +Y  CG+  DA   FS M E
Sbjct: 551 VSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSE 610

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWN+++  C+ HG   EA+ LF+QM+K  IKP+  TF+ VL+AC H G +++GL Y
Sbjct: 611 RNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSY 670

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M ++  +  PR +HY  ++ + GRAG L+ A+ FI  M       V++ LLSAC+VH
Sbjct: 671 FKSMSDEYGIR-PRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVH 729

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +AK +L+L P+D A YVLLSN    T+ W +   +R +M +RG+RK+PG SW
Sbjct: 730 KNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSW 789

Query: 306 V 306
           +
Sbjct: 790 I 790



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 110/191 (57%), Gaps = 1/191 (0%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           L I  YS+    L  + V+  +  R+ +SW A+++G+   G GE+AL  + +M +AG+  
Sbjct: 82  LLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVP 141

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
             + ++S++ +      F +G+ +HA  +K G+ S +FV N ++ +Y  CG+   A +VF
Sbjct: 142 TPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVF 201

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M  RD V++N+L+ G A  G+   A+++FE+MQ + + PD  T   +L+AC   G + 
Sbjct: 202 CDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQ 261

Query: 181 KGLQ-YFYLMR 190
           KG Q + YL +
Sbjct: 262 KGTQLHSYLFK 272



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 143/291 (49%), Gaps = 7/291 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V   ++ ++ +SW ++IAG+      + AL  F EM++ GI  D   + S +     I
Sbjct: 400 RRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGI 459

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  ++G Q+HA I+  GY  +V + N LV +YA CG I +A   F  M+ +D ++ N L+
Sbjct: 460 NAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLV 519

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G A  G   EA+++F +M ++ +K +  TF+  LSA  +   I +G Q +  +++   S
Sbjct: 520 SGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHS 579

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN--REIAV 252
            E    E   A++ L G+ G   +A+   + MS     S +  ++++C  HG     + +
Sbjct: 580 FE---TEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS-WNTIITSCSQHGRGLEALDL 635

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
               +   + PND     +L+  S      +     +++    GIR +P +
Sbjct: 636 FDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDH 686



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 99/186 (53%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC S    + V+  +  R+ +++N +I+G    G GE AL+ F EM+ +G+  D 
Sbjct: 185 ITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDC 244

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            TI+S++ A   +   ++G Q+H+ +FK G  S+  ++  L+ +Y  CG +  A  +F+S
Sbjct: 245 VTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNS 304

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            D  ++V WN +L+         ++ +LF QMQ   I+P+  T+  +L  C     ID G
Sbjct: 305 SDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG 364

Query: 183 LQYFYL 188
            Q   L
Sbjct: 365 EQIHSL 370



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 12/231 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C        +++S    N + WN ++  F  +    ++ + F +M+ AGI  + FT 
Sbjct: 289 YVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTY 348

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             I+           G+Q+H+L  K G++S+++V   L+ MY+  G +  A +V   + E
Sbjct: 349 PCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKE 408

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D+VSW S++ G   H   ++A+  F++MQK  I PD       +S C     + +GLQ 
Sbjct: 409 KDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQI 468

Query: 185 ----YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPG 231
               Y      D S+       + A+V L  R G + EA S    M    G
Sbjct: 469 HARIYVSGYSGDVSI-------WNALVNLYARCGRIREAFSSFEEMELKDG 512



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 49/100 (49%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           ++HA     G      V N L+ +Y+  G +  A +VF  +  RD VSW ++L G A +G
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              EA+ L+ QM +  + P       VLS+C  A    +G
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG 162



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 4/171 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S  D +  +S +  RN++SWN II      G G +AL  F +M++ GI  + 
Sbjct: 589 ISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPND 648

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T   ++ A   +   +EG     ++  + G          ++ ++   G ++ A K   
Sbjct: 649 VTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIE 708

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            M    D + W +LL  C  H      V  F      E++P  +   V+LS
Sbjct: 709 EMPIAADAMVWRTLLSACKVH--KNIEVGEFAAKHLLELEPHDSASYVLLS 757


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  249 bits (637), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 185/304 (60%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C       +V+  +  R Q+SWNA+I G    G  E A++ F+ M+   +  D 
Sbjct: 304 ITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDS 363

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ A+  IS   + + +H    ++  D +V+V   L+ MYA CG +N A  +F+S
Sbjct: 364 FTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS 423

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             ER +++WN+++ G   HG+ + AV+LFE+M+   I P+ TTFL VLSAC HAG +D+G
Sbjct: 424 ARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEG 483

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M+ D  LEP   EHY  +V LLGRAG L+EA +FI  M  +PG SVY A+L AC
Sbjct: 484 REYFTSMKEDYGLEPG-MEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGAC 542

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N E+A  SA+++ +L P +   +VLL+N+      W D   +RT M   G++K PG
Sbjct: 543 KLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPG 602

Query: 303 YSWV 306
           +S +
Sbjct: 603 WSII 606



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 143/276 (51%), Gaps = 7/276 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + V+  + T+N +SWNA+I G+   G   +AL  F+ M + G+D+   ++
Sbjct: 206 YCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSV 265

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            + + A G +    EG ++H L+ +IG DSNV V N L+ MY+ C  ++ A+ VF  +D 
Sbjct: 266 LAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDR 325

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R  VSWN+++LGCA +G S +AV+LF +MQ   +KPD  T + V+ A      I   LQ 
Sbjct: 326 RTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALAD---ISDPLQA 382

Query: 186 FYLMRNDASLEPPRAEH-YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            ++      L   +  +  TA++ +  + G +N A    NS +R      + A++     
Sbjct: 383 RWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS-ARERHVITWNAMIHGYGS 441

Query: 245 HGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKA 278
           HG  + AV      + + + PN+     +LS  S A
Sbjct: 442 HGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHA 477



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 132/282 (46%), Gaps = 11/282 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFT 64
           Y++C    D + V+  +  R++++WNA++AG+   G    A++    M++  G   D  T
Sbjct: 104 YAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSIT 163

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + S++ A          ++ HA   + G +  V V   ++  Y  CG I  A  VF  M 
Sbjct: 164 LVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMP 223

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            ++ VSWN+++ G A +G SREA+ LF +M +  +     + L  L AC   G +D+G++
Sbjct: 224 TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMR 283

Query: 185 YFYLMRN---DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
              L+     D+++         A++ +  +   ++ A    + + R    S + A++  
Sbjct: 284 VHELLVRIGLDSNVSV-----MNALITMYSKCKRVDLASHVFDELDRRTQVS-WNAMILG 337

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWD 283
           C  +G  E AVR   R + L    P  + L+S +    D  D
Sbjct: 338 CAQNGCSEDAVRLFTR-MQLENVKPDSFTLVSVIPALADISD 378



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 1/126 (0%)

Query: 46  ALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105
           AL  F  M  AG      T TS++           G+ +HA +   G DS       L  
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGT 164
           MYA C    DA +VF  M  RD V+WN+L+ G A +G +R A+++  +MQ+ E  +PD  
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 165 TFLVVL 170
           T + VL
Sbjct: 163 TLVSVL 168


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  249 bits (637), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 185/304 (60%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C       +V+  +  R Q+SWNA+I G    G  E A++ F+ M+   +  D 
Sbjct: 304 ITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDS 363

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ A+  IS   + + +H    ++  D +V+V   L+ MYA CG +N A  +F+S
Sbjct: 364 FTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS 423

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             ER +++WN+++ G   HG+ + AV+LFE+M+   I P+ TTFL VLSAC HAG +D+G
Sbjct: 424 ARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEG 483

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M+ D  LEP   EHY  +V LLGRAG L+EA +FI  M  +PG SVY A+L AC
Sbjct: 484 REYFTSMKEDYGLEPG-MEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGAC 542

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N E+A  SA+++ +L P +   +VLL+N+      W D   +RT M   G++K PG
Sbjct: 543 KLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPG 602

Query: 303 YSWV 306
           +S +
Sbjct: 603 WSII 606



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 143/276 (51%), Gaps = 7/276 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + V+  + T+N +SWNA+I G+   G   +AL  F+ M + G+D+   ++
Sbjct: 206 YCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSV 265

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            + + A G +    EG ++H L+ +IG DSNV V N L+ MY+ C  ++ A+ VF  +D 
Sbjct: 266 LAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDR 325

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R  VSWN+++LGCA +G S +AV+LF +MQ   +KPD  T + V+ A      I   LQ 
Sbjct: 326 RTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALAD---ISDPLQA 382

Query: 186 FYLMRNDASLEPPRAEH-YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            ++      L   +  +  TA++ +  + G +N A    NS +R      + A++     
Sbjct: 383 RWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS-ARERHVITWNAMIHGYGS 441

Query: 245 HGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKA 278
           HG  + AV      + + + PN+     +LS  S A
Sbjct: 442 HGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHA 477



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 132/282 (46%), Gaps = 11/282 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFT 64
           Y++C    D + V+  +  R++++WNA++AG+   G    A++    M++  G   D  T
Sbjct: 104 YAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSIT 163

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + S++ A          ++ HA   + G +  V V   ++  Y  CG I  A  VF  M 
Sbjct: 164 LVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMP 223

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            ++ VSWN+++ G A +G SREA+ LF +M +  +     + L  L AC   G +D+G++
Sbjct: 224 TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMR 283

Query: 185 YFYLMRN---DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
              L+     D+++         A++ +  +   ++ A    + + R    S + A++  
Sbjct: 284 VHELLVRIGLDSNVSV-----MNALITMYSKCKRVDLASHVFDELDRRTQVS-WNAMILG 337

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWD 283
           C  +G  E AVR   R + L    P  + L+S +    D  D
Sbjct: 338 CAQNGCSEDAVRLFTR-MQLENVKPDSFTLVSVIPALADISD 378



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 1/126 (0%)

Query: 46  ALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105
           AL  F  M  AG      T TS++           G+ +HA +   G DS       L  
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGT 164
           MYA C    DA +VF  M  RD V+WN+L+ G A +G +R A+++  +MQ+ E  +PD  
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 165 TFLVVL 170
           T + VL
Sbjct: 163 TLVSVL 168


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  249 bits (637), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 126/301 (41%), Positives = 184/301 (61%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC    D    +  + +++ ISWN++I+GF   G  E+AL  FS+M +AG +I+ FT 
Sbjct: 619 YARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTF 678

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              V A   ++  K GKQ+HA+I K G+DS   V N L+ +YA CG I+DA + F  M E
Sbjct: 679 GPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPE 738

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++ +SWN++L G + HG+  +A+ LFE M++  + P+  TF+ VLSAC H G +D+G++Y
Sbjct: 739 KNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKY 798

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  MR    L  P+ EHY  +V LLGR+G L+ A  F+  M   P   V + LLSAC VH
Sbjct: 799 FQSMREVHGL-VPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVH 857

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N +I   +A  +L+L P D A YVLLSN+   T  W      R +M +RG++K+PG SW
Sbjct: 858 KNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSW 917

Query: 306 V 306
           +
Sbjct: 918 I 918



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 100/170 (58%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  ++ R+ +SW A+++G    G  E+A+  F +M  +G+    +  +S++ A   +
Sbjct: 225 KKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKV 284

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             +K G+Q+H L+ K G+    +V N LV +Y+  G    A +VF++M +RD VS+NSL+
Sbjct: 285 EFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLI 344

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            G +  GYS +A++LF++M    +KPD  T   +LSAC   G +  G Q+
Sbjct: 345 SGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQF 394



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 94/179 (52%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C         + S  T N + WN ++  +  L +  ++ K F++M+  GI+ + FT 
Sbjct: 417 YVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTY 476

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+     +     G+Q+H  + K G+  NV+V + L+ MYA  G ++ A K+F  + E
Sbjct: 477 PSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKE 536

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +D+VSW +++ G A H    EA+ LF++MQ   I  D   F   +SAC     +++G Q
Sbjct: 537 KDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQ 595



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 131/289 (45%), Gaps = 5/289 (1%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++  ++ ++ +SW A+IAG+       +AL  F EM+  GI  D     S + A   I 
Sbjct: 529 KIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQ 588

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
              +G+Q+HA     GY  ++ V N LV +YA CG + DA   F  +  +D +SWNSL+ 
Sbjct: 589 ALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLIS 648

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A  G+  EA+ LF QM K   + +  TF   +SA  +   +  G Q   ++       
Sbjct: 649 GFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTG--H 706

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN--REIAVRS 254
               E    ++ L  + G +++AE     M      S + A+L+    HG+  + +++  
Sbjct: 707 DSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEIS-WNAMLTGYSQHGHGFKALSLFE 765

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
             + L + PN      +LS  S      +     +++    G+  KP +
Sbjct: 766 DMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEH 814



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 120/264 (45%), Gaps = 8/264 (3%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIV-GAIGVI 75
            V+  +  R    WN ++  F       + L  F  M Q  +  D  T   ++ G  G  
Sbjct: 124 TVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGD 183

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             F   +++HA     GY++++FV N L+ +Y   G +N A KVF  + +RD VSW ++L
Sbjct: 184 VPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAML 243

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-MRNDAS 194
            G +  G   EAV LF QM  + + P    F  VLSAC    F   G Q   L ++   S
Sbjct: 244 SGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFS 303

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           LE        A+V L  R G    AE   N+M +    S Y +L+S     G  + A+  
Sbjct: 304 LETYVC---NALVTLYSRLGNFIPAEQVFNAMLQRDEVS-YNSLISGLSQQGYSDKALEL 359

Query: 255 AKRV-LD-LWPNDPAIYVLLSNVS 276
            K++ LD L P+   +  LLS  S
Sbjct: 360 FKKMCLDCLKPDCVTVASLLSACS 383



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 95/182 (52%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YSR  + +  + V++++  R+++S+N++I+G    G  ++AL+ F +M    +  D 
Sbjct: 313 VTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDC 372

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ A   +     GKQ H+   K G  S++ ++  L+ +Y  C  I  A++ F S
Sbjct: 373 VTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLS 432

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            +  ++V WN +L+         E+ ++F QMQ   I+P+  T+  +L  C     +D G
Sbjct: 433 TETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLG 492

Query: 183 LQ 184
            Q
Sbjct: 493 EQ 494



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 26/187 (13%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F +G ++H  I K+G+ + V +  RL+ +Y   G ++ A  VF  M  R L  WN +L  
Sbjct: 84  FSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHR 143

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC------------CHAGFIDKGLQY 185
                 +   + LF +M + ++KPD  T+  VL  C             HA  I  G + 
Sbjct: 144 FVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYEN 203

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              + N              ++ L  + GFLN A+   + + +    S + A+LS     
Sbjct: 204 SLFVCN-------------PLIDLYFKNGFLNSAKKVFDGLQKRDSVS-WVAMLSGLSQS 249

Query: 246 GNREIAV 252
           G  E AV
Sbjct: 250 GCEEEAV 256



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 16/177 (9%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C +  D +  +  +  +N+ISWNA++ G+   G G +AL  F +M+Q G+  ++
Sbjct: 717 ITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNH 776

Query: 63  FTITSIVGA---IGV----ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
            T   ++ A   +G+    I  F+  +++H L+ K  + + V      V +    G ++ 
Sbjct: 777 VTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACV------VDLLGRSGLLSR 830

Query: 116 ANKVFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           A +    M  + D +   +LL  C  H      +  F      E++P  +   V+LS
Sbjct: 831 ARRFVEEMPIQPDAMVCRTLLSACIVH--KNIDIGEFAASHLLELEPKDSATYVLLS 885


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 185/304 (60%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C    + +N++  +  R+ +SW A+IAG+   G   +AL+ F +M + G  ++ 
Sbjct: 350 ITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNR 409

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            + +S +     +   + GKQ+H  + K GY++  FV N L+ MY  CG+I +AN +F  
Sbjct: 410 SSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKE 469

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  +D+VSWN+++ G + HG+   A++ FE M++  +KPD  T + VLSAC H G +DKG
Sbjct: 470 MAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKG 529

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            QYFY M  D  +  P ++HY  +V LLGRAG L +A + + +M   P  +++  LL A 
Sbjct: 530 RQYFYTMTQDYGV-MPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGAS 588

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN E+A  +A ++  + P +  +YVLLSN+  ++  W D G +R  M ++G++K PG
Sbjct: 589 RVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPG 648

Query: 303 YSWV 306
           YSW+
Sbjct: 649 YSWI 652



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 40/295 (13%)

Query: 13  LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           ++ +  + S+  R+ +SWN II G+   G  ++A + F E        D FT T++V   
Sbjct: 236 VEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ----DVFTWTAMVSGY 291

Query: 73  -------------------------GVISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVF 105
                                     +++G+ +G++M     +F +    NV   N ++ 
Sbjct: 292 IQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMIT 351

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
            YA CG I++A  +F  M +RD VSW +++ G +  G+S EA++LF QM++   + + ++
Sbjct: 352 GYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSS 411

Query: 166 FLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
           F   LS C     ++ G Q +  L++              A++ +  + G + EA     
Sbjct: 412 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVG---NALLLMYCKCGSIEEANDLFK 468

Query: 225 SMSRNPGPSVYKALLSACQVHGNREIAVR---SAKRVLDLWPNDPAIYVLLSNVS 276
            M+     S +  +++    HG  E+A+R   S KR   L P+D  +  +LS  S
Sbjct: 469 EMAGKDIVS-WNTMIAGYSRHGFGEVALRFFESMKRE-GLKPDDATMVAVLSACS 521



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 20/174 (11%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           RC+ +L    V+  +   + +S+N +I+G+   G  E A K F EM +  +      ++ 
Sbjct: 79  RCNEAL---RVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDL------VSW 129

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
            V   G +     GK     +F+I  + +V   N ++  YA  G ++DA  VF  M E++
Sbjct: 130 NVMIKGYVRNRNLGKARE--LFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKN 187

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            VSWN+LL     +    EA  LF+  +          + +V   C   GF+ K
Sbjct: 188 DVSWNALLSAYVQNSKMEEACMLFKSRE---------NWALVSWNCLLGGFVKK 232



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 85/183 (46%), Gaps = 18/183 (9%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R+  SWN +++G+   G  + A   F  M +   D+ +  +         +
Sbjct: 146 RELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKN-DVSWNAL---------L 195

Query: 76  SGFKEGKQMHA--LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           S + +  +M    ++FK   +  +   N L+  +     I +A + F SM+ RD+VSWN+
Sbjct: 196 SAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNT 255

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RN 191
           ++ G A  G   EA QLF++    ++     T+  ++S       +++  + F  M  RN
Sbjct: 256 IITGYAQSGKIDEARQLFDESPVQDV----FTWTAMVSGYIQNRMVEEARELFDKMPERN 311

Query: 192 DAS 194
           + S
Sbjct: 312 EVS 314


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 124/304 (40%), Positives = 180/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YSRC    +    +      + I+WNA+++GF   G+ E+AL+ F  M + GID + 
Sbjct: 593 VTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNN 652

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S V A    +  K+GKQ+HA+I K GYDS   V N L+ MYA CG+I+DA K F  
Sbjct: 653 FTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLE 712

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  ++ VSWN+++   + HG+  EA+  F+QM  + ++P+  T + VLSAC H G +DKG
Sbjct: 713 VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 772

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           + YF  M ++  L  P+ EHY  +V +L RAG L+ A+ FI  M   P   V++ LLSAC
Sbjct: 773 IAYFESMNSEYGL-SPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSAC 831

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            VH N EI   +A  +L+L P D A YVLLSN+   +  WD     R  M  +G++K+PG
Sbjct: 832 VVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPG 891

Query: 303 YSWV 306
            SW+
Sbjct: 892 QSWI 895



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 96/169 (56%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +R ++  SW A+I+G        +A++ F +M   GI    +  +S++ A   I
Sbjct: 202 RRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKI 261

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G+Q+H L+ K+G+ S+ +V N LV +Y   G +  A  +FS+M +RD V++N+L+
Sbjct: 262 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLI 321

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G +  GY  +A++LF++M    ++PD  T   ++ AC   G + +G Q
Sbjct: 322 NGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQ 370



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 125/255 (49%), Gaps = 7/255 (2%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           ++ +SW  +IAG+      ++AL  F +M   GI  D   +T+ V A   +   KEG+Q+
Sbjct: 514 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 573

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA     G+ S++  QN LV +Y+ CG I ++   F   +  D ++WN+L+ G    G +
Sbjct: 574 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 633

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
            EA+++F +M +  I  +  TF   + A      + +G Q   ++           E   
Sbjct: 634 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGY--DSETEVCN 691

Query: 205 AIVGLLGRAGFLNEAES-FINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL--DL 261
           A++ +  + G +++AE  F+   ++N     + A+++A   HG    A+ S  +++  ++
Sbjct: 692 ALISMYAKCGSISDAEKQFLEVSTKNEVS--WNAIINAYSKHGFGSEALDSFDQMIHSNV 749

Query: 262 WPNDPAIYVLLSNVS 276
            PN   +  +LS  S
Sbjct: 750 RPNHVTLVGVLSACS 764



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 89/169 (52%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++++S++  R+ +++N +I G    G GE+A++ F  M   G++ D  T+ S+V A    
Sbjct: 303 EHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSAD 362

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+HA   K+G+ SN  ++  L+ +YA C  I  A   F   +  ++V WN +L
Sbjct: 363 GTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVML 422

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +        R + ++F QMQ  EI P+  T+  +L  C   G ++ G Q
Sbjct: 423 VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQ 471



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 119/258 (46%), Gaps = 13/258 (5%)

Query: 6   YSRC---DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           Y++C   +++LD+   +      N + WN ++  +  L     + + F +M+   I  + 
Sbjct: 394 YAKCADIETALDY---FLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 450

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T  SI+     +   + G+Q+H+ I K  +  N +V + L+ MYA  G ++ A  +   
Sbjct: 451 YTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIR 510

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              +D+VSW +++ G   + +  +A+  F QM    I+ D       +SAC     + +G
Sbjct: 511 FAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEG 570

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV-YKALLS 240
            Q +     +  S + P      A+V L  R G +   ES++       G ++ + AL+S
Sbjct: 571 QQIHAQACVSGFSSDLP---FQNALVTLYSRCGKIE--ESYLAFEQTEAGDNIAWNALVS 625

Query: 241 ACQVHGNREIAVRSAKRV 258
             Q  GN E A+R   R+
Sbjct: 626 GFQQSGNNEEALRVFVRM 643



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 108/279 (38%), Gaps = 67/279 (24%)

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
           G +       EG+++H+ I K+G DSN  +  +L   Y   G +  A KVF  M ER + 
Sbjct: 53  GCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIF 112

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC------------CHAG 177
           +WN ++   A      E   LF +M    + P+  TF  VL AC             HA 
Sbjct: 113 TWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHAR 172

Query: 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE---------------SF 222
            + +GL      R+   +  P       ++ L  R GF++ A                + 
Sbjct: 173 ILYQGL------RDSTVVCNP-------LIDLYSRNGFVDLARRVFDGLRLKDHSSWVAM 219

Query: 223 INSMSRN-------------------PGPSVYKALLSACQVHGNREIAVRSAKRVLDL-W 262
           I+ +S+N                   P P  + ++LSAC+   + EI  +    VL L +
Sbjct: 220 ISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 279

Query: 263 PNDP-------AIYVLLSNVSKATDCWDDAGDIRTLMYN 294
            +D        ++Y  L N+  A   + +      + YN
Sbjct: 280 SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYN 318



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 8/244 (3%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI-GVIS 76
           V+  +  R   +WN +I    +     +    F  M    +  +  T + ++ A  G   
Sbjct: 102 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 161

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            F   +Q+HA I   G   +  V N L+ +Y+  G ++ A +VF  +  +D  SW +++ 
Sbjct: 162 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 221

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G + +    EA++LF  M    I P    F  VLSAC     ++ G Q   L+       
Sbjct: 222 GLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF-- 279

Query: 197 PPRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
              ++ Y   A+V L    G L  AE   ++MS+    + Y  L++     G  E A+  
Sbjct: 280 --SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVT-YNTLINGLSQCGYGEKAMEL 336

Query: 255 AKRV 258
            KR+
Sbjct: 337 FKRM 340


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 124/304 (40%), Positives = 180/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YSRC    +    +      + I+WNA+++GF   G+ E+AL+ F  M + GID + 
Sbjct: 633 VTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNN 692

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S V A    +  K+GKQ+HA+I K GYDS   V N L+ MYA CG+I+DA K F  
Sbjct: 693 FTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLE 752

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  ++ VSWN+++   + HG+  EA+  F+QM  + ++P+  T + VLSAC H G +DKG
Sbjct: 753 VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 812

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           + YF  M ++  L  P+ EHY  +V +L RAG L+ A+ FI  M   P   V++ LLSAC
Sbjct: 813 IAYFESMNSEYGL-SPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSAC 871

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            VH N EI   +A  +L+L P D A YVLLSN+   +  WD     R  M  +G++K+PG
Sbjct: 872 VVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPG 931

Query: 303 YSWV 306
            SW+
Sbjct: 932 QSWI 935



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 96/169 (56%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +R ++  SW A+I+G        +A++ F +M   GI    +  +S++ A   I
Sbjct: 242 RRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKI 301

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G+Q+H L+ K+G+ S+ +V N LV +Y   G +  A  +FS+M +RD V++N+L+
Sbjct: 302 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLI 361

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G +  GY  +A++LF++M    ++PD  T   ++ AC   G + +G Q
Sbjct: 362 NGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQ 410



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 125/255 (49%), Gaps = 7/255 (2%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           ++ +SW  +IAG+      ++AL  F +M   GI  D   +T+ V A   +   KEG+Q+
Sbjct: 554 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 613

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA     G+ S++  QN LV +Y+ CG I ++   F   +  D ++WN+L+ G    G +
Sbjct: 614 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 673

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
            EA+++F +M +  I  +  TF   + A      + +G Q   ++           E   
Sbjct: 674 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGY--DSETEVCN 731

Query: 205 AIVGLLGRAGFLNEAES-FINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL--DL 261
           A++ +  + G +++AE  F+   ++N     + A+++A   HG    A+ S  +++  ++
Sbjct: 732 ALISMYAKCGSISDAEKQFLEVSTKNEVS--WNAIINAYSKHGFGSEALDSFDQMIHSNV 789

Query: 262 WPNDPAIYVLLSNVS 276
            PN   +  +LS  S
Sbjct: 790 RPNHVTLVGVLSACS 804



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 89/169 (52%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++++S++  R+ +++N +I G    G GE+A++ F  M   G++ D  T+ S+V A    
Sbjct: 343 EHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSAD 402

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+HA   K+G+ SN  ++  L+ +YA C  I  A   F   +  ++V WN +L
Sbjct: 403 GTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVML 462

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +        R + ++F QMQ  EI P+  T+  +L  C   G ++ G Q
Sbjct: 463 VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQ 511



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 119/258 (46%), Gaps = 13/258 (5%)

Query: 6   YSRC---DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           Y++C   +++LD+   +      N + WN ++  +  L     + + F +M+   I  + 
Sbjct: 434 YAKCADIETALDY---FLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 490

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T  SI+     +   + G+Q+H+ I K  +  N +V + L+ MYA  G ++ A  +   
Sbjct: 491 YTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIR 550

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              +D+VSW +++ G   + +  +A+  F QM    I+ D       +SAC     + +G
Sbjct: 551 FAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEG 610

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV-YKALLS 240
            Q +     +  S + P      A+V L  R G +   ES++       G ++ + AL+S
Sbjct: 611 QQIHAQACVSGFSSDLP---FQNALVTLYSRCGKIE--ESYLAFEQTEAGDNIAWNALVS 665

Query: 241 ACQVHGNREIAVRSAKRV 258
             Q  GN E A+R   R+
Sbjct: 666 GFQQSGNNEEALRVFVRM 683



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 93/238 (39%), Gaps = 59/238 (24%)

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
           G +       EG+++H+ I K+G DSN  +  +L   Y   G +  A KVF  M ER + 
Sbjct: 93  GCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIF 152

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC------------CHAG 177
           +WN ++   A      E   LF +M    + P+  TF  VL AC             HA 
Sbjct: 153 TWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHAR 212

Query: 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE---------------SF 222
            + +GL      R+   +  P       ++ L  R GF++ A                + 
Sbjct: 213 ILYQGL------RDSTVVCNP-------LIDLYSRNGFVDLARRVFDGLRLKDHSSWVAM 259

Query: 223 INSMSRN-------------------PGPSVYKALLSACQVHGNREIAVRSAKRVLDL 261
           I+ +S+N                   P P  + ++LSAC+   + EI  +    VL L
Sbjct: 260 ISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 317



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 8/244 (3%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI-GVIS 76
           V+  +  R   +WN +I    +     +    F  M    +  +  T + ++ A  G   
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 201

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            F   +Q+HA I   G   +  V N L+ +Y+  G ++ A +VF  +  +D  SW +++ 
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 261

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G + +    EA++LF  M    I P    F  VLSAC     ++ G Q   L+       
Sbjct: 262 GLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF-- 319

Query: 197 PPRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
              ++ Y   A+V L    G L  AE   ++MS+    + Y  L++     G  E A+  
Sbjct: 320 --SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVT-YNTLINGLSQCGYGEKAMEL 376

Query: 255 AKRV 258
            KR+
Sbjct: 377 FKRM 380


>gi|449503129|ref|XP_004161848.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/301 (40%), Positives = 181/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +    LD    +  + + +  SW  + AG    G   +ALK   EM+  G+ ++ FT+
Sbjct: 462 YVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALKVIYEMKNVGVRLNKFTL 521

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            + + +   ++  +EGK+ H L  K+G D +V V N L+ MYA CG +  AN VF SMDE
Sbjct: 522 ATALNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSMDE 581

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R +VSW ++++G AH+G ++EA+Q+F++M+K E +P+  TF+ VL+AC   GFID+  +Y
Sbjct: 582 RSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNACSQGGFIDEAWKY 641

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  + P   +HY  +V LLGRAG + EAE  I  M   PG  V++ LL AC VH
Sbjct: 642 FSSMSADHGIAPSE-DHYVCMVNLLGRAGCIKEAEDLILQMPFQPGSLVWQTLLGACLVH 700

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E   R+A+  L+L  NDP+ Y+LLSN+    D WD  G +R LM  R ++K PG SW
Sbjct: 701 GDIETGKRAAEHALNLDRNDPSTYILLSNMFAGGDNWDSVGILRELMETRDVKKVPGSSW 760

Query: 306 V 306
           +
Sbjct: 761 M 761



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 1/181 (0%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           R +  L+   V+ S  +++ +SWNA++AG+  L   E   K +  M    +  D FT  S
Sbjct: 364 RHEKLLEALEVFESCLSKDTVSWNAMMAGYLQLAYFELP-KFWRRMNLESVKPDNFTFAS 422

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           I+  +  +S F+ G Q+H  + K GY +++ V N L  MY     + D  K F  M   D
Sbjct: 423 ILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLDGFKAFDEMSSSD 482

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
           + SW  +  GC   G   +A+++  +M+   ++ +  T    L++C +   I++G ++  
Sbjct: 483 VCSWTQMAAGCLQCGEPMKALKVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKKFHG 542

Query: 188 L 188
           L
Sbjct: 543 L 543



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 2/168 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIVGAIGVIS 76
           ++  +  RN +SW+AIIAGF   G   +AL  F  M   G I  + FT+ S + A  +  
Sbjct: 272 LFDEMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLTQ 331

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
                 Q++A I ++GY SNVF+ N  +        + +A +VF S   +D VSWN+++ 
Sbjct: 332 RLICSYQIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMA 391

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           G     Y  E  + + +M    +KPD  TF  +L+          GLQ
Sbjct: 392 GYLQLAYF-ELPKFWRRMNLESVKPDNFTFASILTGLAALSEFRLGLQ 438



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 2/124 (1%)

Query: 51  SEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC 110
           S+   + + ++ F ++ +   + + S  + G  +HA   K     ++F  N ++  Y  C
Sbjct: 205 SKSENSSVKLEDFYVSFLQRCV-LTSDSRHGSAIHAKFLKGFLPFSLFFHNHVLNFYVKC 263

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVV 169
           G ++   ++F  M ER++VSW++++ G   HG   EA+ LF +M     I P+  T +  
Sbjct: 264 GRLSYGLQLFDEMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSA 323

Query: 170 LSAC 173
           L AC
Sbjct: 324 LHAC 327


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 189/304 (62%), Gaps = 3/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+     +   V+  + TR+ + WN+II GF     G +AL  F  M++AG   D 
Sbjct: 194 IDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQ 253

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+TS++ A   ++  + G+Q+H  + K  +D ++ + N L+ MY  CG++ DAN  FS 
Sbjct: 254 ATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSR 311

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E+D++SW++++ G A +GYSR+A++LFE M+++  +P+  T L VL AC HAG ++KG
Sbjct: 312 MVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKG 371

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF  M+    ++P R EHY  ++ LLGRAG L+EA   I+ M   P    ++ LL AC
Sbjct: 372 WYYFRSMKKLFGVDPGR-EHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGAC 430

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH N ++A+ +AK++++L P D   Y+LLSN+   T  W+D  ++R  M NRGIRK PG
Sbjct: 431 RVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPG 490

Query: 303 YSWV 306
            SW+
Sbjct: 491 CSWI 494



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 112/212 (52%), Gaps = 10/212 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++++  +  RN +SW  +I+ + N    ++ALKC   M + G+  + FT +S++ A    
Sbjct: 110 EDLFDEMPERNVVSWTTMISAYSN-KLNDKALKCLILMFREGVRPNMFTYSSVLRAC--- 165

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
            G    +Q+H  I K G +S+VFV++ L+ +Y+    +++A  VF  M  RDLV WNS++
Sbjct: 166 DGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSII 225

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G A +    EA+ LF++M++     D  T   VL AC     ++ G Q + ++++ D  
Sbjct: 226 GGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQD 285

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           L         A++ +  + G L +A S  + M
Sbjct: 286 LILN-----NALIDMYCKCGSLEDANSAFSRM 312



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 35  AGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYD 94
           A FC+     +A++    M + G+  D  T + ++         +EGK++H  IF  GY+
Sbjct: 28  ANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYE 87

Query: 95  SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
             +FV N L+ MY     + +A  +F  M ER++VSW +++   ++   + +A++    M
Sbjct: 88  PKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNK-LNDKALKCLILM 146

Query: 155 QKTEIKPDGTTFLVVLSAC--------CHAGFIDKGLQYFYLMRN 191
            +  ++P+  T+  VL AC         H G I  GL+    +R+
Sbjct: 147 FREGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRS 191


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 183/301 (60%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+R     D Q V+ ++ +RN +SWNA+IAG       E+AL+ F  M + G    +F+ 
Sbjct: 206 YTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSY 265

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+ GA       ++GK +HA + K G     F  N L+ MYA  G+I+DA K+F  + +
Sbjct: 266 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 325

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWNSLL   A HG+ +EAV  FE+M++  I+P+  +FL VL+AC H+G +D+G  Y
Sbjct: 326 RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY 385

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           + LM+ D  +  P A HY  +V LLGRAG LN A  FI  M   P  +++KALL+AC++H
Sbjct: 386 YELMKKDGIV--PEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH 443

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +A+ V +L P+DP  +V+L N+  +   W+DA  +R  M   G++K+P  SW
Sbjct: 444 KNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSW 503

Query: 306 V 306
           V
Sbjct: 504 V 504



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 150/295 (50%), Gaps = 8/295 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  + + V+  +  R+ ++W  +I+G+        AL  F++M + G   + FT+
Sbjct: 105 YAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTL 164

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A         G Q+H    K G+DSNV V + L+ +Y   G ++DA  VF +++ 
Sbjct: 165 SSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALES 224

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           R+ VSWN+L+ G A    + +A++LF+ M +   +P   ++  +  AC   GF+++G   
Sbjct: 225 RNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWV 284

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + Y++++   L    A     ++ +  ++G +++A    + +++    S + +LL+A   
Sbjct: 285 HAYMIKSGEKLV---AFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS-WNSLLTAYAQ 340

Query: 245 HGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
           HG  + AV      R + + PN+ +   +L+  S  +   D+      LM   GI
Sbjct: 341 HGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSH-SGLLDEGWHYYELMKKDGI 394



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 32/199 (16%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           +G+ +HA I +  +  ++ + N L+ MYA CG++ +A KVF  M +RD V+W +L+ G +
Sbjct: 78  QGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYS 137

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA-------CC-----------------H 175
            H    +A+  F QM +    P+  T   V+ A       CC                 H
Sbjct: 138 QHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVH 197

Query: 176 AGFIDKGLQYFYLMRNDA-----SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN- 229
            G     L   Y + +DA     +LE      + A++    R     +A      M R+ 
Sbjct: 198 VGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDG 257

Query: 230 --PGPSVYKALLSACQVHG 246
             P    Y +L  AC   G
Sbjct: 258 FRPSHFSYASLFGACSSTG 276


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/291 (40%), Positives = 187/291 (64%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R+ +SW AII+G+   G  E+AL  F EM++ G   +  T +  +     I
Sbjct: 345 RKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADI 404

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  + GKQ+H  + K G+++  FV N L+ MY  CG+ ++AN VF  ++E+D+VSWN+++
Sbjct: 405 AALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMI 464

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG+ R+A+ LFE M+K  +KPD  T + VLSAC H+G ID+G +YFY M  D ++
Sbjct: 465 AGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNV 524

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           +P  ++HYT ++ LLGRAG L EAE+ + +M  +PG + + ALL A ++HGN E+  ++A
Sbjct: 525 KPT-SKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAA 583

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + V  + P +  +YVLLSN+  A+  W D G +R+ M   G++K  GYSWV
Sbjct: 584 EMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWV 634



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 23/194 (11%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSE--------------------- 52
           D + ++  +  R+ ISWN +I+G+  +G   QA + F+E                     
Sbjct: 219 DARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGM 278

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQM--HALIFKIGYDSNVFVQNRLVFMYAIC 110
           + +A    D   + + +    +++G+ + K+M     +F+     N+   N ++  Y   
Sbjct: 279 VDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQN 338

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G I  A K+F  M +RD VSW +++ G A +G+  EA+ +F +M++     + +TF   L
Sbjct: 339 GGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCAL 398

Query: 171 SACCHAGFIDKGLQ 184
           S C     ++ G Q
Sbjct: 399 STCADIAALELGKQ 412



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 11/151 (7%)

Query: 9   CDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           CDS+L    V++S+  R+ +S+NA+I+G+        A   F +M +     D F+   +
Sbjct: 62  CDSAL---RVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPER----DLFSWNVM 114

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           +   G +   + G + H L F +    +V   N ++  YA  G +++A +VF+ M  R+ 
Sbjct: 115 L--TGYVRNRRLG-EAHKL-FDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNS 170

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
           +SWN LL    H+G  +EA +LFE     E+
Sbjct: 171 ISWNGLLAAYVHNGRLKEARRLFESQSNWEL 201



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 10/171 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S+ +  +V+  +  ++ +SWN +IAG+   G G QAL  F  M++AG+  D  T+
Sbjct: 436 YFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITM 495

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR----LVFMYAICGAINDANKVFS 121
             ++ A         G +     + +  D NV   ++    ++ +    G + +A  +  
Sbjct: 496 VGVLSACSHSGLIDRGTE---YFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMR 552

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           +M  +    SW +LL     HG +    +  E + K E  P  +   V+LS
Sbjct: 553 NMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKME--PQNSGMYVLLS 601



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 80/173 (46%), Gaps = 19/173 (10%)

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           D ++   N+ +  +   G  + A +VF+SM  R  VS+N+++ G   +     A  LF++
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDK 102

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAE--HYTAIVGLLG 211
           M + ++     ++ V+L+       + +  + F LM        P+ +   + A++    
Sbjct: 103 MPERDL----FSWNVMLTGYVRNRRLGEAHKLFDLM--------PKKDVVSWNAMLSGYA 150

Query: 212 RAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
           + GF++EA    N M      S +  LL+A  VH  R   ++ A+R+ +   N
Sbjct: 151 QNGFVDEAREVFNKMPHRNSIS-WNGLLAA-YVHNGR---LKEARRLFESQSN 198


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 183/301 (60%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+R     D Q V+ ++ +RN +SWNA+IAG       E+AL+ F  M + G    +F+ 
Sbjct: 206 YTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSY 265

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+ GA       ++GK +HA + K G     F  N L+ MYA  G+I+DA K+F  + +
Sbjct: 266 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 325

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWNSLL   A HG+ +EAV  FE+M++  I+P+  +FL VL+AC H+G +D+G  Y
Sbjct: 326 RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY 385

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           + LM+ D  +  P A HY  +V LLGRAG LN A  FI  M   P  +++KALL+AC++H
Sbjct: 386 YELMKKDGIV--PEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH 443

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +A+ V +L P+DP  +V+L N+  +   W+DA  +R  M   G++K+P  SW
Sbjct: 444 KNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSW 503

Query: 306 V 306
           V
Sbjct: 504 V 504



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 150/295 (50%), Gaps = 8/295 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  + + V+  +  R+ ++W  +I+G+        AL  F++M + G   + FT+
Sbjct: 105 YAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTL 164

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A         G Q+H    K G+DSNV V + L+ +Y   G ++DA  VF +++ 
Sbjct: 165 SSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALES 224

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           R+ VSWN+L+ G A    + +A++LF+ M +   +P   ++  +  AC   GF+++G   
Sbjct: 225 RNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWV 284

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + Y++++   L    A     ++ +  ++G +++A    + +++    S + +LL+A   
Sbjct: 285 HAYMIKSGEKLV---AFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS-WNSLLTAYAQ 340

Query: 245 HGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
           HG  + AV      R + + PN+ +   +L+  S  +   D+      LM   GI
Sbjct: 341 HGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSH-SGLLDEGWHYYELMKKDGI 394



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 32/199 (16%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           +G+ +HA I +  +  ++ + N L+ MYA CG++ +A KVF  M +RD V+W +L+ G +
Sbjct: 78  QGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYS 137

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA-------CC-----------------H 175
            H    +A+  F QM +    P+  T   V+ A       CC                 H
Sbjct: 138 QHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVH 197

Query: 176 AGFIDKGLQYFYLMRNDA-----SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN- 229
            G     L   Y + +DA     +LE      + A++    R     +A      M R+ 
Sbjct: 198 VGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDG 257

Query: 230 --PGPSVYKALLSACQVHG 246
             P    Y +L  AC   G
Sbjct: 258 FRPSHFSYASLFGACSSTG 276


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  247 bits (631), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 125/304 (41%), Positives = 184/304 (60%), Gaps = 1/304 (0%)

Query: 3    ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
            I  YS+  S  D + V+  +  R+ +SWN +IAG+   G G  AL+   +M++ G+ ++ 
Sbjct: 730  ISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNK 789

Query: 63   FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            F+  SI+ A    S  +EGK++HA I K     +V V   L+ MYA CG++ +A +VF +
Sbjct: 790  FSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDN 849

Query: 123  MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              E+++V+WN+++   A HG + +A+  F  M K  IKPDG+TF  +LSAC H+G + +G
Sbjct: 850  FTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEG 909

Query: 183  LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             + F  + +   L P   EHY  +VGLLGRAG   EAE+ IN M   P  +V++ LL AC
Sbjct: 910  NRIFSSLESQHGLSPT-IEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGAC 968

Query: 243  QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            ++HGN  +A  +A   L L   +PA+YVLLSNV  A   WDD   IR +M  RGIRK+PG
Sbjct: 969  RIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPG 1028

Query: 303  YSWV 306
             SW+
Sbjct: 1029 RSWI 1032



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 104/177 (58%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC S ++ QNV+   R R+ ISWN++IAG    GS E A K F EM++ G++ D  T 
Sbjct: 531 YRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITF 590

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++         + G+Q+H LI + G   +V + N L+ MY  CG++ DA +VF S+  
Sbjct: 591 ASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRH 650

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           R+++SW +++ G A  G  R+A +LF QMQ    KP  +TF  +L AC  +  +D+G
Sbjct: 651 RNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEG 707



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 101/187 (54%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+RC      + +++++  R+ ISWNAIIAG+       +A+K + +M+  G+    
Sbjct: 427 ISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGR 486

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   ++ A    S + +GK +H  I + G  SN  + N L+ MY  CG+I +A  VF  
Sbjct: 487 VTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEG 546

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              RD++SWNS++ G A HG    A +LF +M+K  ++PD  TF  VL  C +   ++ G
Sbjct: 547 TRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELG 606

Query: 183 LQYFYLM 189
            Q   L+
Sbjct: 607 RQIHMLI 613



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 126/251 (50%), Gaps = 3/251 (1%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           L I  Y +C S  D   V+  +  R+ ISWN++I+ +   G  ++A + F EM+ AG   
Sbjct: 122 LLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIP 181

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
              T  SI+ A    +  + GK++H+ I + GY  +  VQN L+ MY  C  +  A +VF
Sbjct: 182 SKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVF 241

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           S +  RD+VS+N++L   A   Y  E + LF QM    I PD  T++ +L A      +D
Sbjct: 242 SGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLD 301

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +G +   L  N+      R    TA+  +  R G +  A+  + + + +    VY AL++
Sbjct: 302 EGKRIHKLAVNEGLNSDIRVG--TALATMFVRCGDVAGAKQALEAFA-DRDVVVYNALIA 358

Query: 241 ACQVHGNREIA 251
           A   HG+ E A
Sbjct: 359 ALAQHGHYEEA 369



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 131/249 (52%), Gaps = 5/249 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           + RC      +    +   R+ + +NA+IA     G  E+A + + +MR  G+ ++  T 
Sbjct: 329 FVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTY 388

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A         G+ +H+ I ++G+ S+V + N L+ MYA CG +  A ++F++M +
Sbjct: 389 LSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPK 448

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH-AGFIDKGLQ 184
           RDL+SWN+++ G A      EA++L++QMQ   +KP   TFL +LSAC + + + D  + 
Sbjct: 449 RDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMI 508

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +  ++R+        A    A++ +  R G + EA++     +R      + ++++    
Sbjct: 509 HEDILRSGIKSNGHLA---NALMNMYRRCGSIMEAQNVFEG-TRARDIISWNSMIAGHAQ 564

Query: 245 HGNREIAVR 253
           HG+ E A +
Sbjct: 565 HGSYEAAYK 573



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 109/224 (48%), Gaps = 4/224 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C+     + V+S +  R+ +S+N ++  +      E+ +  F +M   GI  D  T 
Sbjct: 228 YGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTY 287

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A    S   EGK++H L    G +S++ V   L  M+  CG +  A +   +  +
Sbjct: 288 INLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFAD 347

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           RD+V +N+L+   A HG+  EA + + QM+   +  + TT+L VL+AC  +  +  G L 
Sbjct: 348 RDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELI 407

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
           + ++     S +    +   +++ +  R G L  A    N+M +
Sbjct: 408 HSHISEVGHSSD---VQIGNSLISMYARCGDLPRARELFNTMPK 448



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 2/218 (0%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           E K++HA + + G   ++F+ N L+ MY  C +++DA++VF  M  RD++SWNSL+   A
Sbjct: 100 EAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYA 159

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR 199
             G+ ++A QLFE+MQ     P   T++ +L+ACC    ++ G +    +        PR
Sbjct: 160 QQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPR 219

Query: 200 AEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL 259
            ++  +++ + G+   L  A    + + R    S    L    Q     E      +   
Sbjct: 220 VQN--SLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSS 277

Query: 260 DLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
           +  P D   Y+ L +        D+   I  L  N G+
Sbjct: 278 EGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGL 315


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  247 bits (631), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 188/304 (61%), Gaps = 2/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C       ++++++   N ++WNA+I G+   G  ++AL  F  M+  GI +D 
Sbjct: 389 ISMYSKCKRVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDC 447

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+  ++ A+   S  ++ K +H L  +   D+NVFV   LV MYA CGAI  A K+F  
Sbjct: 448 FTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDM 507

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER +++WN+++ G   HG  +E + LF +MQK  +KP+  TFL V+SAC H+GF+++G
Sbjct: 508 MQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEG 567

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L  F  M+ D  LEP   +HY+A+V LLGRAG L++A +FI  M   PG SV  A+L AC
Sbjct: 568 LLLFKSMQEDYYLEPT-MDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGAC 626

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N E+  ++A+++  L P++   +VLL+N+  +   WD    +RT M ++G+ K PG
Sbjct: 627 KIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPG 686

Query: 303 YSWV 306
            SWV
Sbjct: 687 CSWV 690



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 98/177 (55%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    +   ++  ++ ++ +SW  ++AG+   G  ++AL+   +M++AG   D  T+
Sbjct: 190 YAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTL 249

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A+  +   + G+ +H   F+ G++S V V N L+ MY  CG+   A  VF  M  
Sbjct: 250 VSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRS 309

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + +VSWN+++ GCA +G S EA   F +M      P   T + VL AC + G +++G
Sbjct: 310 KTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERG 366



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 133/288 (46%), Gaps = 32/288 (11%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S+   + V+  +R++  +SWN +I G    G  E+A   F +M   G      T+
Sbjct: 291 YFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTM 350

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   +   + G  +H L+ K+  DSNV V N L+ MY+ C  ++ A  +F+++++
Sbjct: 351 MGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEK 410

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC------HAGFI 179
            + V+WN+++LG A +G  +EA+ LF  MQ   IK D  T + V++A         A +I
Sbjct: 411 TN-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWI 469

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
             GL     M N+  +        TA+V +  + G +  A    + M      + + A++
Sbjct: 470 -HGLAVRACMDNNVFVS-------TALVDMYAKCGAIKTARKLFDMMQERHVIT-WNAMI 520

Query: 240 SACQVHGNREIAVRSAKRVLDLW---------PNDPAIYVLLSNVSKA 278
                HG         K  LDL+         PND     ++S  S +
Sbjct: 521 DGYGTHG-------VGKETLDLFNEMQKGAVKPNDITFLSVISACSHS 561



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 90/170 (52%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  + +  S+ +   V+  V  +  + ++ ++ G+    S   AL  F  M    + +  
Sbjct: 86  ISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVV 145

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
                ++   G     K+G+++H LI   G++SN+FV   ++ +YA C  I++A K+F  
Sbjct: 146 GDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFER 205

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           M  +DLVSW +L+ G A +G+++ A+QL  QMQ+   KPD  T + +L A
Sbjct: 206 MQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPA 255


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  247 bits (630), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 119/282 (42%), Positives = 178/282 (63%), Gaps = 1/282 (0%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R+ +SW AIIAG+   G  E+AL  F E++Q G  ++  T    +     I+  + GKQ+
Sbjct: 357 RDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQI 416

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H    K+GY +  FV N L+ MY  CG+I++AN  F  ++E+D+VSWN++L G A HG+ 
Sbjct: 417 HGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFG 476

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
           R+A+ +FE M+   +KPD  T + VLSAC H G +D+G +YFY M  D  +  P ++HYT
Sbjct: 477 RQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGV-IPTSKHYT 535

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
            ++ LLGRAG L EA+  I +M   PG + + ALL A ++HGN E+  ++A+ V  + P 
Sbjct: 536 CMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQ 595

Query: 265 DPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +  +YVLLSN+  A+  W DA  +R+ M + G++K PGYSWV
Sbjct: 596 NSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWV 637



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 41/203 (20%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI- 72
           D + ++  +  R+ ISWN +I+G+   G   QA + F E        D FT T++V    
Sbjct: 222 DARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTR----DVFTWTAMVSGYV 277

Query: 73  ------------------------GVISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFM 106
                                    +I+G+ + K+M     +F+     N+   N ++  
Sbjct: 278 QNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITG 337

Query: 107 YAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG--- 163
           Y   G I  A K F  M +RD VSW +++ G A  G+  EA+ +F      EIK DG   
Sbjct: 338 YGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMF-----VEIKQDGESL 392

Query: 164 --TTFLVVLSACCHAGFIDKGLQ 184
              TF   LS C     ++ G Q
Sbjct: 393 NRATFGCALSTCADIAALELGKQ 415



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 42/140 (30%)

Query: 166 FLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINS 225
           FL+V+    + G +D G +YFY M  + S+ P  ++HYT ++ LLGR   L E       
Sbjct: 770 FLLVV---IYTGLLDTGAEYFYPMNEEYSVTPT-SKHYTCMIDLLGRVDRLEEG------ 819

Query: 226 MSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDA 285
                      ALL A ++HGN E+  ++A+    + P +       S +SK  D     
Sbjct: 820 -----------ALLGASRIHGNTELGEKAAQMFFKMGPQN-------SGISKMRDV---- 857

Query: 286 GDIRTLMYNRGIRKKPGYSW 305
                     G++K PGYSW
Sbjct: 858 ----------GVQKVPGYSW 867



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 11/144 (7%)

Query: 9   CDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           CDS+L   +V++++  R+ +S+NA+I+G+        A   F +M +     D F+   +
Sbjct: 65  CDSAL---HVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPER----DLFSWNVM 117

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           +   G +   + G      +F +  + +V   N L+  YA  G +++A +VF +M E++ 
Sbjct: 118 L--TGYVRNCRLGDARR--LFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNS 173

Query: 129 VSWNSLLLGCAHHGYSREAVQLFE 152
           +SWN LL    H+G   EA  LFE
Sbjct: 174 ISWNGLLAAYVHNGRIEEACLLFE 197



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 18/168 (10%)

Query: 22  VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG 81
           V+  + + WN  I+     G  + AL  F+ M +           S V    +ISG+   
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPR----------RSSVSYNAMISGYLRN 93

Query: 82  KQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
            + +    +F    + ++F  N ++  Y     + DA ++F  M E+D+VSWNSLL G A
Sbjct: 94  SKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYA 153

Query: 140 HHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
            +GY  EA ++F+ M +K  I  +G     +L+A  H G I++    F
Sbjct: 154 QNGYVDEAREVFDNMPEKNSISWNG-----LLAAYVHNGRIEEACLLF 196



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 88/185 (47%), Gaps = 18/185 (9%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +  ++ +SWN++++G+   G  ++A + F  M +           + +   G
Sbjct: 129 DARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPE----------KNSISWNG 178

Query: 74  VISGFKEGKQMHA--LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
           +++ +    ++    L+F+   D ++   N L+  +     + DA  +F  M  RD +SW
Sbjct: 179 LLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISW 238

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM-- 189
           N+++ G A  G   +A +LF++    ++     T+  ++S     G +D+   +F  M  
Sbjct: 239 NTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGYVQNGMLDEAKTFFDEMPE 294

Query: 190 RNDAS 194
           +N+ S
Sbjct: 295 KNEVS 299


>gi|449439723|ref|XP_004137635.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 121/301 (40%), Positives = 181/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +    LD    +  + + +  SW  + AG    G   +AL+   EM+  G+ ++ FT+
Sbjct: 462 YVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALEVIYEMKNVGVRLNKFTL 521

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            + + +   ++  +EGK+ H L  K+G D +V V N L+ MYA CG +  AN VF SMDE
Sbjct: 522 ATALNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSMDE 581

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R +VSW ++++G AH+G ++EA+Q+F++M+K E +P+  TF+ VL+AC   GFID+  +Y
Sbjct: 582 RSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNACSQGGFIDEAWKY 641

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  + P   +HY  +V LLGRAG + EAE  I  M   PG  V++ LL AC VH
Sbjct: 642 FSSMSADHGIAPSE-DHYVCMVNLLGRAGCIKEAEDLILQMPFQPGSLVWQTLLGACLVH 700

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E   R+A+  L+L  NDP+ Y+LLSN+    D WD  G +R LM  R ++K PG SW
Sbjct: 701 GDIETGKRAAEHALNLDRNDPSTYILLSNMFAGGDNWDSVGILRELMETRDVKKVPGSSW 760

Query: 306 V 306
           +
Sbjct: 761 M 761



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 1/181 (0%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           R +  L+   V+ S  +++ +SWNA++AG+  L   E   K +  M    +  D FT  S
Sbjct: 364 RHEKLLEALEVFESCLSKDTVSWNAMMAGYLQLAYFELP-KFWRRMNLESVKPDNFTFAS 422

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           I+  +  +S F+ G Q+H  + K GY +++ V N L  MY     + D  K F  M   D
Sbjct: 423 ILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLDGFKAFDEMSSSD 482

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
           + SW  +  GC   G   +A+++  +M+   ++ +  T    L++C +   I++G ++  
Sbjct: 483 VCSWTQMAAGCLQCGEPMKALEVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKKFHG 542

Query: 188 L 188
           L
Sbjct: 543 L 543



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 2/168 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIVGAIGVIS 76
           ++  +  RN +SW+AIIAGF   G   +AL  F  M   G I  + FT+ S + A  +  
Sbjct: 272 LFDEMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLTQ 331

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
                 Q++A I ++GY SNVF+ N  +        + +A +VF S   +D VSWN+++ 
Sbjct: 332 RLICSYQIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMA 391

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           G     Y  E  + + +M    +KPD  TF  +L+          GLQ
Sbjct: 392 GYLQLAYF-ELPKFWRRMNLESVKPDNFTFASILTGLAALSEFRLGLQ 438



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 1/101 (0%)

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           + S  + G  +HA   K     ++F  N ++  Y  CG ++   ++F  M ER++VSW++
Sbjct: 227 LTSDSRHGSAIHAKFLKGFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEMPERNVVSWSA 286

Query: 134 LLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSAC 173
           ++ G   HG   EA+ LF +M     I P+  T +  L AC
Sbjct: 287 IIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHAC 327


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  246 bits (629), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 119/282 (42%), Positives = 178/282 (63%), Gaps = 1/282 (0%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R+ +SW AIIAG+   G  E+AL  F E++Q G  ++  T    +     I+  + GKQ+
Sbjct: 357 RDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQI 416

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H    K+GY +  FV N L+ MY  CG+I++AN  F  ++E+D+VSWN++L G A HG+ 
Sbjct: 417 HGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFG 476

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
           R+A+ +FE M+   +KPD  T + VLSAC H G +D+G +YFY M  D  +  P ++HYT
Sbjct: 477 RQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGV-IPTSKHYT 535

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
            ++ LLGRAG L EA+  I +M   PG + + ALL A ++HGN E+  ++A+ V  + P 
Sbjct: 536 CMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQ 595

Query: 265 DPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +  +YVLLSN+  A+  W DA  +R+ M + G++K PGYSWV
Sbjct: 596 NSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWV 637



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 41/203 (20%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI- 72
           D + ++  +  R+ ISWN +I+G+   G   QA + F E        D FT T++V    
Sbjct: 222 DARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTR----DVFTWTAMVSGYV 277

Query: 73  ------------------------GVISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFM 106
                                    +I+G+ + K+M     +F+     N+   N ++  
Sbjct: 278 QNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITG 337

Query: 107 YAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG--- 163
           Y   G I  A K F  M +RD VSW +++ G A  G+  EA+ +F      EIK DG   
Sbjct: 338 YGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMF-----VEIKQDGESL 392

Query: 164 --TTFLVVLSACCHAGFIDKGLQ 184
              TF   LS C     ++ G Q
Sbjct: 393 NRATFGCALSTCADIAALELGKQ 415



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 11/144 (7%)

Query: 9   CDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           CDS+L   +V++++  R+ +S+NA+I+G+        A   F +M +     D F+   +
Sbjct: 65  CDSAL---HVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPER----DLFSWNVM 117

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           +   G +   + G      +F +  + +V   N L+  YA  G +++A +VF +M E++ 
Sbjct: 118 L--TGYVRNCRLGDARR--LFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNS 173

Query: 129 VSWNSLLLGCAHHGYSREAVQLFE 152
           +SWN LL    H+G   EA  LFE
Sbjct: 174 ISWNGLLAAYVHNGRIEEACLLFE 197



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 18/168 (10%)

Query: 22  VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG 81
           V+  + + WN  I+     G  + AL  F+ M +           S V    +ISG+   
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPR----------RSSVSYNAMISGYLRN 93

Query: 82  KQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
            + +    +F    + ++F  N ++  Y     + DA ++F  M E+D+VSWNSLL G A
Sbjct: 94  SKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYA 153

Query: 140 HHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
            +GY  EA ++F+ M +K  I  +G     +L+A  H G I++    F
Sbjct: 154 QNGYVDEAREVFDNMPEKNSISWNG-----LLAAYVHNGRIEEACLLF 196



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 88/185 (47%), Gaps = 18/185 (9%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +  ++ +SWN++++G+   G  ++A + F  M +           + +   G
Sbjct: 129 DARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPE----------KNSISWNG 178

Query: 74  VISGFKEGKQMHA--LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
           +++ +    ++    L+F+   D ++   N L+  +     + DA  +F  M  RD +SW
Sbjct: 179 LLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISW 238

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM-- 189
           N+++ G A  G   +A +LF++    ++     T+  ++S     G +D+   +F  M  
Sbjct: 239 NTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGYVQNGMLDEAKTFFDEMPE 294

Query: 190 RNDAS 194
           +N+ S
Sbjct: 295 KNEVS 299


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 181/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+C +  +    +      + I+WNA+++GF   G+ E+AL+ F+ M + GID + 
Sbjct: 616 VTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNN 675

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S V A    +  K+GKQ+HA+I K GYDS   V N ++ MYA CG+I+DA K F  
Sbjct: 676 FTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLE 735

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  ++ VSWN+++   + HG+  EA+  F+QM  + ++P+  T + VLSAC H G +DKG
Sbjct: 736 LSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 795

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           ++YF  M  +  L  P+ EHY  +V +L RAG L+ A+ FI  M   P   V++ LLSAC
Sbjct: 796 IEYFESMNTEYGL-APKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSAC 854

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            VH N EI   +A  +L+L P D A YVLLSN+      WD     R  M  +G++K+PG
Sbjct: 855 VVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPG 914

Query: 303 YSWV 306
            SW+
Sbjct: 915 QSWI 918



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 96/169 (56%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  ++  SW A+I+G        +A++ F +M   GI    +  +S++ A   I
Sbjct: 225 RRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKI 284

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G+Q+H L+ K+G+ S+ +V N LV +Y   G++  A  +FS+M +RD V++N+L+
Sbjct: 285 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLI 344

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G +  GY  +A++LF++MQ   ++PD  T   ++ AC   G +  G Q
Sbjct: 345 NGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQ 393



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 123/254 (48%), Gaps = 5/254 (1%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           ++ +SW  +IAG+      ++AL  F +M   GI  D   +T+ V A   +   KEG+Q+
Sbjct: 537 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 596

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA     G+ S++  QN LV +Y+ CG I +A   F   +  D ++WN+L+ G    G +
Sbjct: 597 HAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNN 656

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
            EA+++F +M +  I  +  TF   + A      + +G Q   ++           E   
Sbjct: 657 EEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGY--DSETEVCN 714

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL--DLW 262
           AI+ +  + G +++A+     +S     S + A+++A   HG    A+ S  +++  ++ 
Sbjct: 715 AIISMYAKCGSISDAKKQFLELSMKNEVS-WNAMINAYSKHGFGSEALDSFDQMIHSNVR 773

Query: 263 PNDPAIYVLLSNVS 276
           PN   +  +LS  S
Sbjct: 774 PNHVTLVGVLSACS 787



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 93/179 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y    S +  ++++S++  R+ +++N +I G    G GE+A++ F  M+  G++ D  T+
Sbjct: 316 YFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTL 375

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+V A         G+Q+HA   K+G+ SN  ++  L+ +YA C  I  A   F   + 
Sbjct: 376 ASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEV 435

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            ++V WN +L+        R + ++F QMQ  EI P+  T+  +L  C   G ++ G Q
Sbjct: 436 ENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQ 494



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 114/255 (44%), Gaps = 7/255 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C       N +      N + WN ++  +  L     + + F +M+   I  + +T 
Sbjct: 417 YAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTY 476

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+     +   + G+Q+H+ I K  +  N +V + L+ MYA  G ++ A  +      
Sbjct: 477 PSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG 536

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D+VSW +++ G   + +  +A+  F QM    I+ D       +SAC     + +G Q 
Sbjct: 537 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 596

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV-YKALLSACQ 243
           +     +  S + P      A+V L  + G  N  E+++       G ++ + AL+S  Q
Sbjct: 597 HAQACVSGFSSDLP---FQNALVTLYSKCG--NIEEAYLAFEQTEAGDNIAWNALVSGFQ 651

Query: 244 VHGNREIAVRSAKRV 258
             GN E A+R   R+
Sbjct: 652 QSGNNEEALRVFARM 666



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 96/238 (40%), Gaps = 59/238 (24%)

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
           G +       EG+++H+ I K+G+D+N  +  +L+  Y   G ++ A KVF  M ER + 
Sbjct: 76  GCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIF 135

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC------------CHAG 177
           +WN ++   A    S +   LF +M    + P+  TF  VL AC             HA 
Sbjct: 136 TWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHAR 195

Query: 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE---------------SF 222
            I +GL    ++ N              ++ L  R GF++ A                + 
Sbjct: 196 IIYQGLGKSTIVCN-------------PLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAM 242

Query: 223 INSMSRN-------------------PGPSVYKALLSACQVHGNREIAVRSAKRVLDL 261
           I+ +S+N                   P P  + ++LSAC+   + EI  +    VL L
Sbjct: 243 ISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 300


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 117/242 (48%), Positives = 165/242 (68%), Gaps = 1/242 (0%)

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +  I+ A   ++  ++GKQ+HA I KIG++ +V V N LV MY  CG I DA +VFS + 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E D+ SWN+++ G A HG  +EAV LFEQM +T +KP+  TF+VVLS C HAG +D+G  
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF  M  D  +  P+AEHY+ +V L GRAG L+EA +FIN M   P  SV+ +LL AC+V
Sbjct: 121 YFDSMTRDHGIS-PKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRV 179

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN E+A R+ +++++L P +P  YVLLSN+  A   WDDAG +R +M +R ++K+PG S
Sbjct: 180 HGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCS 239

Query: 305 WV 306
           W+
Sbjct: 240 WI 241



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 5/196 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D Q V+S +   +  SWNA+I+G    G G++A+  F +M Q G+  +  T 
Sbjct: 43  YGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITF 102

Query: 66  TSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++          EG+    ++    G        + +V ++   G +++A    + M 
Sbjct: 103 VVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMP 162

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-CHAGFIDKG 182
            E +   W SLL  C  HG    A +  EQ+   E+ P+     V+LS     AG  D  
Sbjct: 163 VEPNASVWGSLLGACRVHGNIELAERAVEQL--IELTPENPGTYVLLSNIYAAAGRWDDA 220

Query: 183 LQYFYLMRNDASLEPP 198
            +   +M++ +  + P
Sbjct: 221 GKVRKMMKDRSVKKEP 236


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  246 bits (629), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 122/301 (40%), Positives = 180/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   V++ +  R+ ISWN+IIAG    G  ++ L+ F +M  A I    ++ 
Sbjct: 284 YAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSF 343

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+ A   ++    GKQ+H  I + G+D N+F+ + LV MYA CG I  A ++F  M  
Sbjct: 344 SSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRL 403

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSW ++++GCA HG + +A++LFEQM+   IKP+   F+ VL+AC H G +D+  +Y
Sbjct: 404 RDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKY 463

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  + P   EHY A+  LLGRAG L EA  FI  M   P  S++  LLSAC+VH
Sbjct: 464 FNSMTRDFGIAPG-VEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVH 522

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++A + A R+L++ PN+   Y+LL+N+  A   W +A   R  M   GIRK P  SW
Sbjct: 523 XNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSW 582

Query: 306 V 306
           +
Sbjct: 583 I 583



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 134/264 (50%), Gaps = 7/264 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  ++ +SWN IIAG    G  E+ L+   EM  A +  D FT++S++  I   
Sbjct: 193 RKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAEN 252

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                GK++H    + G D++++V + L+ MYA C  + D+ +VF+ + ERD +SWNS++
Sbjct: 253 VDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSII 312

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            GC  +G   E ++ F QM   +IKP   +F  ++ AC H   +  G Q + Y+ RN   
Sbjct: 313 AGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 372

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
                A   +++V +  + G +  A+   + M      S + A++  C +HG    A+  
Sbjct: 373 ENIFIA---SSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-WTAMIMGCALHGQAPDAIEL 428

Query: 255 AKRVLD--LWPNDPAIYVLLSNVS 276
            +++    + PN  A   +L+  S
Sbjct: 429 FEQMETEGIKPNHVAFMAVLTACS 452



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 32/197 (16%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS  +   D   +++++     ++W ++I  + + G   Q+L  F  M  +G+  D+   
Sbjct: 50  YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVF 109

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI-------------CGA 112
            S++ +  ++     G+ +H  I ++G D +++  N L+ MY+               G 
Sbjct: 110 PSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGE 169

Query: 113 IND-------------------ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           + D                     K+F  M E+DLVSWN+++ G A +G   E +++  +
Sbjct: 170 VFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIRE 229

Query: 154 MQKTEIKPDGTTFLVVL 170
           M    +KPD  T   VL
Sbjct: 230 MGGANLKPDSFTLSSVL 246


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  246 bits (628), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 122/301 (40%), Positives = 182/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C   +D   V++ +  R+ ISWN+IIAG    G  ++ LK F +M  A I    ++ 
Sbjct: 345 YAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSF 404

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+ A   ++    GKQ+H  I + G+D N+F+ + LV MYA CG I  A ++F  M  
Sbjct: 405 SSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRL 464

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSW ++++GCA HG++ +A++LFEQM+   I+P+   F+ VL+AC HAG +D+  +Y
Sbjct: 465 RDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKY 524

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  + P   EHY A+  LLGRAG L EA  FI  M   P  SV+  LLSAC+VH
Sbjct: 525 FNSMTLDFGIAPG-VEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVH 583

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++A + A R+L++ P +   Y+LL+N+  A   W +A   R  +   GIRK P  SW
Sbjct: 584 KNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSW 643

Query: 306 V 306
           +
Sbjct: 644 I 644



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 135/280 (48%), Gaps = 7/280 (2%)

Query: 2   QILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           QI   S   S    + ++  +  ++ +SWN IIAG    G   + L    EM  A +  D
Sbjct: 240 QIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPD 299

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            FT++S++  I       +GK++H    + G D+ V+V + L+ MYA C  + D+ +VF+
Sbjct: 300 SFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFT 359

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + ERD +SWNS++ GC  +G   E ++ F QM   +IKP   +F  ++ AC H   +  
Sbjct: 360 LLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHL 419

Query: 182 GLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           G Q + Y+ RN        A   +++V +  + G +  A    + M      S + A++ 
Sbjct: 420 GKQLHGYITRNGFDENIFIA---SSLVDMYAKCGNIRTARQIFDRMRLRDMVS-WTAMIM 475

Query: 241 ACQVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKA 278
            C +HG+   A+      +   + PN  A   +L+  S A
Sbjct: 476 GCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHA 515



 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 66/140 (47%), Gaps = 8/140 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS  +   D   +++++     ++W ++I  + + G   ++L  F  M  +G+  D+   
Sbjct: 52  YSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVF 111

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND-------ANK 118
            S++ A  ++     G+ +H  I ++G D +++  N L+ MY+    +         A++
Sbjct: 112 PSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQ 171

Query: 119 VFSSMDERDL-VSWNSLLLG 137
           V   M ER   V   S+L+G
Sbjct: 172 VLDEMTERTRSVRTASVLVG 191


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 184/304 (60%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C       +++ ++R +  +SWNA+I G+   G   +AL  F EM+   I  D 
Sbjct: 274 ISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDS 333

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ A+  +S  ++ K +H L+ +   D NVFV   LV MYA CGAI+ A K+F  
Sbjct: 334 FTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDM 393

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+ R +++WN+++ G   HG  + +V+LF++M+K  IKP+  TFL  LSAC H+G +++G
Sbjct: 394 MNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEG 453

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L +F  M+ D  +EP   +HY A+V LLGRAG LN+A  FI  M   PG +VY A+L AC
Sbjct: 454 LCFFESMKKDYGIEPT-MDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGAC 512

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N ++  ++A  +  L P+D   +VLL+N+      W     +RT+M   G++K PG
Sbjct: 513 KIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPG 572

Query: 303 YSWV 306
            S V
Sbjct: 573 CSLV 576



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 133/281 (47%), Gaps = 17/281 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S    + ++  +  R  +SWN++I G+   G  E A+  F +M   G+     T+
Sbjct: 176 YSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTV 235

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              + A   +   + GK +H L+ ++  DS+V V N L+ MY+ C  ++ A  +F ++  
Sbjct: 236 MGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRN 295

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC------HAGFI 179
           + LVSWN+++LG A +G   EA+  F +MQ   IKPD  T + V+ A         A +I
Sbjct: 296 KTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWI 355

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
              +   +L +N   +        TA+V +  + G ++ A    + M+     + + A++
Sbjct: 356 HGLVIRRFLDKNVFVM--------TALVDMYAKCGAIHTARKLFDMMNARHVIT-WNAMI 406

Query: 240 SACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
                HG  + +V   K +    + PND      LS  S +
Sbjct: 407 DGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHS 447



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 93/177 (52%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D  N++  +  R+ + WN +I+G+   G  + AL     M + G   D  TI
Sbjct: 75  YAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITI 134

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A+      + G  +H  + + G++S V V   LV MY+ CG+++ A  +F  MD 
Sbjct: 135 VSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDH 194

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           R +VSWNS++ G    G +  A+ +F++M    ++P   T +  L AC   G +++G
Sbjct: 195 RTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERG 251



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 5/229 (2%)

Query: 33  IIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIG 92
           ++ G+    S + AL  FS M+   +    +  T ++   G  S  K GK++H  +   G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 93  YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
           +  N+F    +V MYA C  INDA  +F  M ERDLV WN+++ G A +G+++ A+ L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 153 QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLG 211
           +M +   +PD  T + +L A      +  G+  + Y++R  A  E       TA+V +  
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLR--AGFE-SLVNVSTALVDMYS 177

Query: 212 RAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260
           + G ++ A    + M      S + +++      G+ E A+   +++LD
Sbjct: 178 KCGSVSIARVIFDGMDHRTVVS-WNSMIDGYVQSGDAEGAMLIFQKMLD 225


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 182/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      Q  + S+   + ++W  +I+G    G  E+AL  FS+MR  G+  D FTI
Sbjct: 569 YVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTI 628

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            ++  A   ++  ++G+Q+HA   K+   S+ FV   LV MYA CG+I+DA  +F  ++ 
Sbjct: 629 ATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEM 688

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            ++ +WN++L+G A HG  +EA+QLF+QM+   IKPD  TF+ VLSAC H+G + +  +Y
Sbjct: 689 MNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKY 748

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M  D  ++ P  EHY+ +   LGRAG + EAE+ I+SMS     S+Y+ LL+AC+V 
Sbjct: 749 IRSMHRDYGIK-PEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQ 807

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E   R A ++L+L P D + YVLLSN+  A   WD+    RT+M    ++K PG+SW
Sbjct: 808 GDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSW 867

Query: 306 V 306
           +
Sbjct: 868 I 868



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 137/276 (49%), Gaps = 7/276 (2%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           ++WNA+++G+     G + L+ F+ M + G   D FT+ +++   G +    +GKQ+HA 
Sbjct: 490 VAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAY 549

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
             K GYD +++V + ++ MY  CG ++ A   F S+   D V+W +L+ GC  +G    A
Sbjct: 550 AIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERA 609

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAI 206
           + +F QM+   + PD  T   +  A      +++G Q +   ++ + + +P      T++
Sbjct: 610 LHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVG---TSL 666

Query: 207 VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV--LDLWPN 264
           V +  + G +++A      +      + + A+L     HG  + A++  K++  L + P+
Sbjct: 667 VDMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPD 725

Query: 265 DPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
                 +LS  S +    +    IR++  + GI+ +
Sbjct: 726 KVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPE 761



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 82/158 (51%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F+N   +      IS N I++G+ + G     LKCF +M ++ ++ D  T   ++     
Sbjct: 275 FENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVR 334

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +     G+Q+H +  K+G D  + V N L+ MY     I  A  VF++M ERDL+SWNS+
Sbjct: 335 LDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSV 394

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           + G A      EAV LF Q+ +  +KPD  T   VL A
Sbjct: 395 IAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKA 432



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 133/270 (49%), Gaps = 13/270 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V++++  R+ ISWN++IAG        +A+  F ++ + G+  D++T+TS++ A   +
Sbjct: 377 RTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSL 436

Query: 76  -SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
             G    KQ+H    K    ++ FV   L+  Y+    + +A  +F   +  DLV+WN++
Sbjct: 437 PEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAM 495

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDA 193
           + G        + ++LF  M K   + D  T   VL  C     I++G Q + Y +++  
Sbjct: 496 MSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGY 555

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA-- 251
            L+   +   + I+ +  + G ++ A+   +S+   P    +  L+S C  +G  E A  
Sbjct: 556 DLDLWVS---SGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTLISGCIENGEEERALH 611

Query: 252 VRSAKRVLDLWPNDPAIYVLLSNVSKATDC 281
           V S  R++ + P++  I    + ++KA+ C
Sbjct: 612 VFSQMRLMGVLPDEFTI----ATLAKASSC 637



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 7/170 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSG-----EQALKCFSEMRQAG 57
           I  YS+C S    + V+  +  R+ +SWN+I+A +     G     ++A   F  +RQ  
Sbjct: 88  ISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDV 147

Query: 58  IDIDYFTITSIVGAIGVISGFK-EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
           +     T++ ++  + + SG+    +  H    KIG D + FV   LV +Y   G + + 
Sbjct: 148 VYTSRMTLSPML-KLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEG 206

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
             +F  M  RD+V WN +L      G+  EA+ L      + + P+  T 
Sbjct: 207 RVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITL 256



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK  HA I  +  +   F+ N L+ MY+ CG++  A +VF  M ERDLVSWNS+L   A 
Sbjct: 65  GKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQ 124

Query: 141 HGYS-----REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
                    +EA  LF  +++  +     T   +L  C H+G++
Sbjct: 125 SSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 168


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 186/301 (61%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C S  D + V+  +  R+ +++NA+I G+     G++ALK F  +++ G+  D  T 
Sbjct: 592 YSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTY 651

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A       +  K++H+L+ K GY S+  + N LV  YA CG+ +DA  VF  M +
Sbjct: 652 INMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMK 711

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+++SWN+++ GCA HG  ++ +QLFE+M+   IKPD  TF+ +LSAC HAG +++G +Y
Sbjct: 712 RNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRY 771

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  + P   EHY  +V LLGRAG L+E E+ I +M       ++ ALL AC++H
Sbjct: 772 FCSMSRDFGITPT-IEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIH 830

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN  +A R+A+  L L P++ A+YV LS++  A   WD A  +R LM  RG+ K+PG SW
Sbjct: 831 GNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSW 890

Query: 306 V 306
           +
Sbjct: 891 I 891



 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 138/244 (56%), Gaps = 3/244 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+RC S  D + +++ +  ++ ISW A+I G    G G +AL  F +M+QAG+  + 
Sbjct: 488 ISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNR 547

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T TSI+ A    +    G+++H  + + G  ++  V N LV MY++CG++ DA +VF  
Sbjct: 548 VTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDR 607

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M +RD+V++N+++ G A H   +EA++LF+++Q+  +KPD  T++ +L+AC ++G ++  
Sbjct: 608 MTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWA 667

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +   L+  D  L      +  A+V    + G  ++A    + M +    S + A++  C
Sbjct: 668 KEIHSLVLKDGYLSDTSLGN--ALVSTYAKCGSFSDALLVFDKMMKRNVIS-WNAIIGGC 724

Query: 243 QVHG 246
             HG
Sbjct: 725 AQHG 728



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 137/269 (50%), Gaps = 32/269 (11%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  + + V+  + T++ +SW  II G+ + G  E A + F +M+Q G+  +  T 
Sbjct: 289 YAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITY 348

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A    +  K GK +H+ I   G++S++ V   LV MYA CG+  D  +VF  +  
Sbjct: 349 INVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVN 408

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC----------- 174
           RDL++WN+++ G A  G   EA +++ QMQ+  + P+  T++++L+AC            
Sbjct: 409 RDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREI 468

Query: 175 HAGFIDKGLQYFYLMRN-------------DASL---EPPRAE--HYTAIVGLLGRAGFL 216
           H+  +  G  +   ++N             DA L   +  R +   +TA++G L ++G  
Sbjct: 469 HSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLG 528

Query: 217 NEAESFINSMSR---NPGPSVYKALLSAC 242
            EA +    M +    P    Y ++L+AC
Sbjct: 529 AEALAVFQDMQQAGLKPNRVTYTSILNAC 557



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 149/296 (50%), Gaps = 6/296 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++C S  D + V+  +  R+ I+WN +I G    G+ E+A + + +M++ G+  + 
Sbjct: 387 VKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNK 446

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   ++ A    +    G+++H+ + K G+  ++ VQN L+ MYA CG+I DA  +F+ 
Sbjct: 447 ITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNK 506

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  +D++SW +++ G A  G   EA+ +F+ MQ+  +KP+  T+  +L+AC     +D G
Sbjct: 507 MVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWG 566

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +  +    +A L    A     +V +    G + +A    + M++      Y A++   
Sbjct: 567 -RRIHQQVIEAGLATD-AHVANTLVNMYSMCGSVKDARQVFDRMTQRD-IVAYNAMIGGY 623

Query: 243 QVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
             H   + A++   R+ +  L P D   Y+ + N    +   + A +I +L+   G
Sbjct: 624 AAHNLGKEALKLFDRLQEEGLKP-DKVTYINMLNACANSGSLEWAKEIHSLVLKDG 678



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 132/298 (44%), Gaps = 50/298 (16%)

Query: 3   ILTYSRCDSSLDFQNVYSSVR--TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           I  Y +C S  + + V++ +    R   SWNA++ G+   G  E+ALK   EM+Q G+ +
Sbjct: 183 INMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLAL 242

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
              T   ++ +    S  + G+++H    K     +V V N ++ MYA CG+I++A +VF
Sbjct: 243 GRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVF 302

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA-------- 172
             M+ + +VSW  ++ G A  G+S  A ++F++MQ+  + P+  T++ VL+A        
Sbjct: 303 DKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALK 362

Query: 173 ---CCHAGFIDKG------------------------LQYFYLMRNDASLEPPRAEHYTA 205
                H+  ++ G                         Q F  + N   +       +  
Sbjct: 363 WGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIA------WNT 416

Query: 206 IVGLLGRAGFLNEAESFINSMSRN---PGPSVYKALLSAC----QVHGNREIAVRSAK 256
           ++G L   G   EA    + M R    P    Y  LL+AC     +H  REI  R  K
Sbjct: 417 MIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVK 474



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 10/204 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           + TY++C S  D   V+  +  RN ISWNAII G    G G+  L+ F  M+  GI  D 
Sbjct: 690 VSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDI 749

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T  S++ A       +EG++    + +  G    +     +V +    G +++   +  
Sbjct: 750 VTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIK 809

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK--PDGTTFLVVLSAC-CHAG 177
           +M  + +   W +LL  C  HG     V + E+  ++ +K  PD     V LS     AG
Sbjct: 810 TMPFQANTRIWGALLGACRIHG----NVPVAERAAESSLKLDPDNAAVYVALSHMYAAAG 865

Query: 178 FIDKGLQYFYLM-RNDASLEPPRA 200
             D   +   LM +   + EP R+
Sbjct: 866 MWDSAAKLRKLMEQRGVTKEPGRS 889



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 70/132 (53%), Gaps = 2/132 (1%)

Query: 44  EQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRL 103
           ++A+     ++Q G  ++      ++     +     G+++H  I +     + +  N L
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182

Query: 104 VFMYAICGAINDANKVFSSMD--ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
           + MY  CG+I +A +V++ ++  ER + SWN++++G   +GY  EA++L  +MQ+  +  
Sbjct: 183 INMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLAL 242

Query: 162 DGTTFLVVLSAC 173
              T + +LS+C
Sbjct: 243 GRATTMRLLSSC 254


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 115/294 (39%), Positives = 187/294 (63%), Gaps = 2/294 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D +N++  +  RN   WN+I+AG+ N G  +++   F EM ++ I+ D  T+ +IV    
Sbjct: 664 DAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCS 723

Query: 74  VISGFKEGKQMHALIFKIGY-DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
            +   + G Q+H+LI K G+ + +V ++  LV MY+ CGAI  A  VF +M+ +++VSWN
Sbjct: 724 SLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWN 783

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           +++ G + HG S+EA+ L+E+M K  + P+  TFL +LSAC H G +++GL+ F  M+ D
Sbjct: 784 AMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQED 843

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            ++E  +AEHYT +V LLGRAG L +A+ F+  M   P  S + ALL AC+VH + ++  
Sbjct: 844 YNIEA-KAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGR 902

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +A+R+ +L P +P  YV++SN+  A   W +  DIR +M  +G++K PG SW+
Sbjct: 903 LAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWI 956



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 114/193 (59%), Gaps = 2/193 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFT 64
           YS+C    +   V+ S+  RN++S+NA++AG+   G  E+AL+ + +M+ + GI  D FT
Sbjct: 422 YSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFT 481

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            T+++          +G+Q+HA + +     N+ V+  LV MY+ CG +N A ++F+ M 
Sbjct: 482 FTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMA 541

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ER+  SWNS++ G   +G ++EA++LF+QMQ   IKPD  +   +LS+C       KG +
Sbjct: 542 ERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRE 601

Query: 185 -YFYLMRNDASLE 196
            + +++RN    E
Sbjct: 602 LHNFIVRNTMEEE 614



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 139/258 (53%), Gaps = 6/258 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++CD       V+  +  RNQ++WN+II+     G    AL  F  M+++G   + 
Sbjct: 318 IDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNR 377

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F + SI+ A   ++   +G+++H  + +   +S++ + + LV MY+ CG + +A++VF S
Sbjct: 378 FNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRS 437

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDK 181
           + ER+ VS+N+LL G    G + EA++L+  MQ  + I+PD  TF  +L+ C +    ++
Sbjct: 438 LLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQ 497

Query: 182 GLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           G Q + +L+R + +         T +V +    G LN A+   N M+     S + +++ 
Sbjct: 498 GRQIHAHLIRANITKNIIVE---TELVHMYSECGRLNYAKEIFNRMAERNAYS-WNSMIE 553

Query: 241 ACQVHGNREIAVRSAKRV 258
             Q +G  + A+R  K++
Sbjct: 554 GYQQNGETQEALRLFKQM 571



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 112/227 (49%), Gaps = 5/227 (2%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           ++WNA+IAG+  + S E+A   F  M + G+  D FT  S +   G +     GKQ+H+ 
Sbjct: 242 VTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSK 301

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +   G+  + FV N L+ MYA C       KVF  M ER+ V+WNS++   A  G+  +A
Sbjct: 302 LIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDA 361

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAI 206
           + LF +MQ++  K +      +L A      I KG + + +L+RN  + +       +A+
Sbjct: 362 LVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILG---SAL 418

Query: 207 VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           V +  + G + EA     S+      S Y ALL+     G  E A+ 
Sbjct: 419 VDMYSKCGMVEEAHQVFRSLLERNEVS-YNALLAGYVQEGKAEEALE 464



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 145/306 (47%), Gaps = 39/306 (12%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C      + +++ +  RN  SWN++I G+   G  ++AL+ F +M+  GI  D F++
Sbjct: 524 YSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSL 583

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI------------ 113
           +S++ +   +S  ++G+++H  I +   +    +Q  LV MYA CG++            
Sbjct: 584 SSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIK 643

Query: 114 -------------------NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
                              NDA  +F  M++R+   WNS+L G A+ G  +E+   F +M
Sbjct: 644 KDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEM 703

Query: 155 QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214
            +++I+ D  T + +++ C     ++ G Q   L+     +        TA+V +  + G
Sbjct: 704 LESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLE-TALVDMYSKCG 762

Query: 215 FLNEAESFINSMSRNPGPSV--YKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYV 270
            + +A +  ++M+   G ++  + A++S    HG  + A+   + +    ++PN+     
Sbjct: 763 AITKARTVFDNMN---GKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLA 819

Query: 271 LLSNVS 276
           +LS  S
Sbjct: 820 ILSACS 825



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN  +WN +I  +  +    + L+ +  MR +G   D FT  S++ A   +
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAM 188

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                 +Q+ + + K G + N+FV   LV  YA  G ++DA      ++   +V+WN+++
Sbjct: 189 EDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVI 248

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            G        EA  +F++M K  + PD  TF   L  C
Sbjct: 249 AGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVC 286



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 70/135 (51%), Gaps = 3/135 (2%)

Query: 42  SGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQN 101
           +G  + K  S   +   D++    +S++      + F+ GK +H  +   GY+ + ++  
Sbjct: 51  NGPDSPKPTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMT 110

Query: 102 RLVFMYAICGAIND---ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
           +++ +YA  G ++D   A K+F  M ER+L +WN+++L  A      E ++L+ +M+ + 
Sbjct: 111 KILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSG 170

Query: 159 IKPDGTTFLVVLSAC 173
              D  TF  V+ AC
Sbjct: 171 NFSDKFTFPSVIKAC 185



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 8/141 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C +    + V+ ++  +N +SWNA+I+G+   G  ++AL  + EM + G+  +  T 
Sbjct: 758 YSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTF 817

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR----LVFMYAICGAINDANKVFS 121
            +I+ A       +EG +   +   +  D N+  +      +V +    G + DA +   
Sbjct: 818 LAILSACSHTGLVEEGLR---IFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVE 874

Query: 122 SMD-ERDLVSWNSLLLGCAHH 141
            M  E ++ +W +LL  C  H
Sbjct: 875 KMPIEPEVSTWGALLGACRVH 895


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 184/304 (60%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C  +     V+  +  + ++SWNA+I G    GS E A++ FS M+   +  D 
Sbjct: 470 ITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDS 529

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ SI+ A+  IS   + + +H    ++  D +V+V   L+ MYA CG ++ A  +F+S
Sbjct: 530 FTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNS 589

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             +R +++WN+++ G   HG  + AV+LFE+M+ +   P+ TTFL VLSAC HAG +D+G
Sbjct: 590 ARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEG 649

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M+ D  LEP   EHY  +V LLGRAG L+EA SFI  M   PG SVY A+L AC
Sbjct: 650 QEYFSSMKEDYGLEPG-MEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGAC 708

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N E+A  SA+R+ +L P +   +VLL+N+      W D   +RT M  +G++K PG
Sbjct: 709 KLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPG 768

Query: 303 YSWV 306
           +S V
Sbjct: 769 WSIV 772



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 145/280 (51%), Gaps = 15/280 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +    + V+  ++ RN +SWNA+I G+   G   +AL  F  M   G+D+   ++
Sbjct: 372 YCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSV 431

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            + + A G +    EG+++H L+ +IG +SNV V N L+ MY  C   + A +VF  +  
Sbjct: 432 LAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGY 491

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +  VSWN+++LGC  +G S +AV+LF +MQ   +KPD  T + ++ A      I   LQ 
Sbjct: 492 KTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALAD---ISDPLQA 548

Query: 186 FYLMRNDASLEPPRAEH-YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            ++      L   +  +  TA++ +  + G ++ A S  NS +R+     + A++     
Sbjct: 549 RWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNS-ARDRHVITWNAMIHGYGS 607

Query: 245 HGNREIAV------RSAKRVLDLWPNDPAIYVLLSNVSKA 278
           HG+ ++AV      +S+ +V    PN+     +LS  S A
Sbjct: 608 HGSGKVAVELFEEMKSSGKV----PNETTFLSVLSACSHA 643



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 135/279 (48%), Gaps = 5/279 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFT 64
           Y++C    D + V+  +  R++++WNA++AG+   G  E A+     M++  G   D  T
Sbjct: 270 YAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVT 329

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + S++ A          +++HA   + G+D  V V   ++ +Y  CGA++ A KVF  M 
Sbjct: 330 LVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQ 389

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +R+ VSWN+++ G A +G + EA+ LF++M    +     + L  L AC   GF+D+G +
Sbjct: 390 DRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRR 449

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
              L+     LE        A++ +  +    + A    + +      S + A++  C  
Sbjct: 450 VHELLVR-IGLE-SNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVS-WNAMILGCTQ 506

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWD 283
           +G+ E AVR   R + L    P  + L+S +    D  D
Sbjct: 507 NGSSEDAVRLFSR-MQLENVKPDSFTLVSIIPALADISD 544



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 46  ALKCFSEMRQA-GIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLV 104
           AL  F+ M  A G      T TS++      +    G+ +HA +   G          L 
Sbjct: 208 ALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALA 267

Query: 105 FMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDG 163
            MYA C    DA +VF  M  RD V+WN+L+ G A +G +  AV +  +MQ+ +  +PD 
Sbjct: 268 NMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDA 327

Query: 164 TTFLVVLSACCHA 176
            T + VL AC  A
Sbjct: 328 VTLVSVLPACADA 340


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 124/301 (41%), Positives = 184/301 (61%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC        V+  + ++N +SWNA+IAGF   G GE  L  F+EM++ G +  +FT 
Sbjct: 86  YARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTY 145

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S+  AI  I   ++GK +HA + K G   + FV N ++ MYA  G++ DA KVF  +D+
Sbjct: 146 SSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDK 205

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +DLV+WNS+L   A +G  REAV  FE+M+K  +  +  TFL +L+AC H G + +G QY
Sbjct: 206 KDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQY 265

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M+ + +LE P  +HY  +V LLGRAG LN+A  FI  M   P  +V+ ALL +C++H
Sbjct: 266 FDMMK-EHNLE-PEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMH 323

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N +I   +A  V +L P+D    VLL N+  +T  WD A  +R +M   G++K+P  SW
Sbjct: 324 KNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSW 383

Query: 306 V 306
           V
Sbjct: 384 V 384



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 84/159 (52%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           TR+  SW ++IAG+      ++AL     M +     + FT  S++ A G  +    G+Q
Sbjct: 3   TRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 62

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +HAL  K  +  +V+V + L+ MYA CG ++ A  VF  ++ ++ VSWN+L+ G A  G 
Sbjct: 63  IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 122

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
               + +F +MQ+   +    T+  V SA    G +++G
Sbjct: 123 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG 161


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  243 bits (620), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 124/302 (41%), Positives = 187/302 (61%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC    + + V+  + ++N++SWNA+I+GF   G GE+AL  F +M++ G     FT 
Sbjct: 240 YARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTY 299

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++ +       ++GK +HA + K G     +V N L+ MYA  G I DA KVF  + +
Sbjct: 300 SALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVK 359

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQK-TEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            D+VS NS+L+G A HG  +EAV+LFE+M    EI+P+  TFL VL+AC HAG +D+GL 
Sbjct: 360 VDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLY 419

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF LM+    LE P+  HYT +V L GRAG L++A+SFI  M   P  +++ ALL A ++
Sbjct: 420 YFELMKK-YGLE-PKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKM 477

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N E+   +A++VL+L P  P  + LLSN+  +   W D   +R  M + G++K+P  S
Sbjct: 478 HKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACS 537

Query: 305 WV 306
           WV
Sbjct: 538 WV 539



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 141/284 (49%), Gaps = 13/284 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLG---SGEQALKCFSEMRQAGID 59
           +  Y++C S    + V+  +  ++ ++W ++I G+   G   S   AL  F EM + G+ 
Sbjct: 133 LFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLR 192

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            + F ++S+V   G +    +GKQ+H   +K G+  NVFV + LV MYA CG + ++  V
Sbjct: 193 PNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLV 252

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  ++ ++ VSWN+L+ G A  G   EA+ LF +MQ+        T+  +L +    G +
Sbjct: 253 FDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSL 312

Query: 180 DKG-LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
           ++G   + ++M++   L          ++ +  ++G + +A+   + + +    S    L
Sbjct: 313 EQGKWLHAHMMKSGKKLVGYVG---NTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSML 369

Query: 239 LSACQVHGNREIAVRSAKRVLDLW----PNDPAIYVLLSNVSKA 278
           +   Q HG  + AV   + ++ LW    PND     +L+  S A
Sbjct: 370 IGYAQ-HGLGKEAVELFEEMM-LWVEIEPNDITFLSVLTACSHA 411



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 62/109 (56%), Gaps = 6/109 (5%)

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           ++   K+GK +H  +    + +++ ++N ++FMYA CG++  A +VF  M  +D+V+W S
Sbjct: 103 MLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTS 162

Query: 134 LLLGCAHHGYSREAVQ---LFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           ++ G +  GY+  A     LF +M +  ++P+    L  L  CC  GF+
Sbjct: 163 MITGYSQDGYASSATTALVLFLEMVRDGLRPNEFA-LSSLVKCC--GFL 208


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  243 bits (620), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 181/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFT 64
           Y+R     +  +++     RN  SW A+I+G    G G  +   F+EMR+ GIDI D   
Sbjct: 181 YARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLV 240

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++S+VG    ++  + GKQ+H L+  +G++S +F+ N LV MYA C  I  A  +F  M 
Sbjct: 241 LSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMP 300

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +D++SW S+++G A HG + EA+ L+++M  + IKP+  TF+ +L AC HAG + +G +
Sbjct: 301 RKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRE 360

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M  D S+ P   +HYT ++ LL R+G L+EAE+ ++ +   P    + +LLSAC  
Sbjct: 361 LFRSMTTDYSINPS-LQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMR 419

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N E+ VR A RVLDL P DP+ Y+LLSNV    + W     +R LM +  +RK+PGYS
Sbjct: 420 HNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYS 479

Query: 305 WV 306
            +
Sbjct: 480 SI 481



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYF 63
            Y +C        ++  +  R+ +SW +I+          + L   + M    G+  D+F
Sbjct: 47  VYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHF 106

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
               IV A   +   + GKQ+HA      +  +  V++ L+ MY  CG  ++A  VF S+
Sbjct: 107 VFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSI 166

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
             ++ VSW S++ G A  G   EA+ LF Q
Sbjct: 167 LFKNSVSWTSMISGYARSGRKCEAMDLFLQ 196



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           ++H+ I K G+D +  + N L+ +Y  CG I  A ++F  M  RD VSW S+L       
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKAL 83

Query: 143 YSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQ 184
             R  + +   M   + ++PD   F  ++ AC   G++  G Q
Sbjct: 84  IPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQ 126


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  243 bits (620), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 182/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C   ++ + ++  +  R  +SWN+II+GF +   GE AL  FS M Q G+  D FT 
Sbjct: 518 YCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTY 577

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++     ++  + GKQ+H  I K+   S+V++ + +V MY+ CG + D+  +F    +
Sbjct: 578 ATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPK 637

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD V+W++++   A+HG   +A++LFE+MQ   +KP+ T F+ VL AC H GF+DKGL Y
Sbjct: 638 RDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHY 697

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  MR+   L+ P+ EHY+ +V LLGR+G +NEA   I SM       +++ LL  C++ 
Sbjct: 698 FREMRSHYGLD-PQMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQ 756

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+A ++A  +L L P D + YVLLSNV      W +   IR+ M N  ++K+PG SW
Sbjct: 757 GNVEVAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSW 816

Query: 306 V 306
           +
Sbjct: 817 I 817



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 119/216 (55%), Gaps = 4/216 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++CD  +D + V+++     + S NA+I G+       +AL+ F  ++++ +D D  ++
Sbjct: 316 YAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISL 375

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +  + A   I G+ EG Q+H L  K G D N+ V N ++ MYA CGA+ +A  +F  M+ 
Sbjct: 376 SGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEI 435

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D VSWN+++     + +  E + LF  M ++ ++PD  TF  V+ AC     ++ G++ 
Sbjct: 436 KDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEV 495

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220
           +  ++++   L+       +AI+ +  + G L EAE
Sbjct: 496 HGRVIKSGMGLDWFVG---SAIIDMYCKCGMLVEAE 528



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 90/179 (50%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C + ++   ++  +  ++ +SWNAIIA        E+ L  F  M ++ ++ D +T 
Sbjct: 417 YAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTF 476

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+V A         G ++H  + K G   + FV + ++ MY  CG + +A K+   ++E
Sbjct: 477 GSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEE 536

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           R  VSWNS++ G +       A+  F +M +  + PD  T+  VL  C +   ++ G Q
Sbjct: 537 RTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQ 595



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 108/225 (48%), Gaps = 5/225 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++ S+  R+ +SWN++++ +   G   ++++ F++MR   I  DY T   ++ A   I
Sbjct: 124 QFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGI 183

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             +  G Q+H L  ++G+DS+V     LV MY+ C  ++ A  +F  M ER+ V W++++
Sbjct: 184 EDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVI 243

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G   +    E ++L++ M    +     TF     +C      + G Q + Y ++ +  
Sbjct: 244 AGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFG 303

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
            +       TA + +  +   + +A    N+   NP    + AL+
Sbjct: 304 YDNIVG---TATLDMYAKCDRMVDARKVFNTFP-NPTRQSHNALI 344



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C       N++  +  RN + W+A+IAG+       + LK +  M   G+ +   T 
Sbjct: 215 YSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATF 274

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S   +   +S F+ G Q+HA   K  +  +  V    + MYA C  + DA KVF++   
Sbjct: 275 ASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPN 334

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
               S N+L++G A      EA+++F  +QK+ +  D  +    L+AC
Sbjct: 335 PTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTAC 382



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 67/152 (44%), Gaps = 33/152 (21%)

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T + I      +     GKQ HA I   G+   VFV N L+  Y  C  +N A  VF  
Sbjct: 39  LTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDK 98

Query: 123 MDERDLVSWNSLLLGCA-------------------------------HHGYSREAVQLF 151
           M +RD++SWN+++ G A                                +G+ R+++++F
Sbjct: 99  MPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIF 158

Query: 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            +M+  EI+ D  TF VVL AC   G  D GL
Sbjct: 159 TKMRLLEIQHDYATFAVVLKAC--TGIEDYGL 188


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  243 bits (620), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 179/301 (59%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC      Q  +  + T++++SWNA+I+G    G GE AL    +M++      +FT 
Sbjct: 234 YARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTY 293

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   I   ++GK +HA + K G     F+ N L+ MYA  G+I+DA +VF  + +
Sbjct: 294 SSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVK 353

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VSWN++L GCA HG  +E +  FEQM +  I+P+  +FL VL+AC H+G +D+GL Y
Sbjct: 354 PDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYY 413

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM+    +EP    HY   V LLGR G L+ AE FI  M   P  +V+ ALL AC++H
Sbjct: 414 FELMKK-YKVEPD-VPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMH 471

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+ V +A+R  +L P+D    +LLSN+  +   W D   +R +M   G++K+P  SW
Sbjct: 472 KNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSW 531

Query: 306 V 306
           V
Sbjct: 532 V 532



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 123/252 (48%), Gaps = 25/252 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D + ++  + T++ ++W A+IAGF        AL  F +M + G   ++FT+
Sbjct: 133 YAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTL 192

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A G   G   G Q+HA   K GY S+V+V + LV MYA CG ++ A   F  M  
Sbjct: 193 SSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPT 252

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC----------- 174
           +  VSWN+L+ G A  G    A+ L  +MQ+   +P   T+  VLSAC            
Sbjct: 253 KSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWV 312

Query: 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
           HA  I  GL+    + N              ++ +  +AG +++A+   + + + P    
Sbjct: 313 HAHMIKSGLKLIAFIGN-------------TLLDMYAKAGSIDDAKRVFDRLVK-PDVVS 358

Query: 235 YKALLSACQVHG 246
           +  +L+ C  HG
Sbjct: 359 WNTMLTGCAQHG 370



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 75/143 (52%), Gaps = 1/143 (0%)

Query: 43  GEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY-DSNVFVQN 101
           G   L     +++  +  DY   + ++     +   ++G+ +HA +    + D+++ +QN
Sbjct: 68  GGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQN 127

Query: 102 RLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
            +V MYA CG ++DA ++F  M  +D+V+W +L+ G + +   R+A+ LF QM +   +P
Sbjct: 128 IIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQP 187

Query: 162 DGTTFLVVLSACCHAGFIDKGLQ 184
           +  T   +L A      +D G Q
Sbjct: 188 NHFTLSSLLKASGSEHGLDPGTQ 210


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 183/301 (60%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC        V+  + ++N++SWNA+IAGF   G GE  L  F+EM++ G    +FT 
Sbjct: 208 YARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTY 267

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S+  A+  I   ++G+ +HA + K G     FV N ++ MYA  G++ DA KVF  +D+
Sbjct: 268 SSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQ 327

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDLV+WN++L   A +G  +EAV  FE+++K  I+ +  TFL VL+AC H G + +G QY
Sbjct: 328 RDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQY 387

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M+ D ++E P  +HY + V LLGRAG L EA  F+  M   P  +V+ ALL AC++H
Sbjct: 388 FDMMK-DYNVE-PEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMH 445

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N +I   +A  V +L P D    VLL N+  +T  WDDA  +R +M   G++K+P  SW
Sbjct: 446 KNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSW 505

Query: 306 V 306
           V
Sbjct: 506 V 506



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 92/180 (51%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C +  D ++V+  + TR+ +SW  +I G+       +AL    +M +A      
Sbjct: 104 IHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSG 163

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT TS + A G   G   G+QMHAL  K   D +V+V + L+ MYA C  ++ A +VF  
Sbjct: 164 FTFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDW 223

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +D ++ VSWN+L+ G A  G     +  F +MQ+        T+  V SA    G +++G
Sbjct: 224 LDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQG 283



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 53/111 (47%)

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
           SI+ A          + +H+ + +     + F+ N L+ MY  CGA++DA  VF  +  R
Sbjct: 67  SIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTR 126

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           D+VSW  L+ G A +    EA+ L   M +   +P G TF   L A    G
Sbjct: 127 DVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACG 177


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 121/301 (40%), Positives = 186/301 (61%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC    + Q ++  + ++N++SWNA+IAG+   G G++A   FS M +  +   +FT 
Sbjct: 163 YARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTY 222

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   +   ++GK +HAL+ K G     FV N L+ MYA  G+I DA KVF  + +
Sbjct: 223 SSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAK 282

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWNS+L G + HG  + A+Q FE+M +T I P+  TFL VL+AC HAG +D+G  Y
Sbjct: 283 RDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHY 342

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M+   ++E P+  HY  +V LLGRAG L+ A  FI+ M   P  +V+ ALL AC++H
Sbjct: 343 FDMMKK-YNVE-PQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMH 400

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +A+ + +L  + P  +VLL N+      W+DA  +R +M   G++K+P  SW
Sbjct: 401 KNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSW 460

Query: 306 V 306
           V
Sbjct: 461 V 461



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 141/282 (50%), Gaps = 17/282 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C   +  + ++  + +R+ ++W A+I G+      + AL    EM + G+  + FT+
Sbjct: 60  YAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTL 119

Query: 66  TSIVGAIGVI--SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            S++ A   +  +   +G+Q+H L  + GYDSNV+V   ++ MYA C  + +A  +F  M
Sbjct: 120 ASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVM 179

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             ++ VSWN+L+ G A  G   +A  LF  M +  +KP   T+  VL AC   G +++G 
Sbjct: 180 VSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGK 239

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVG-----LLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
               LM           E   A VG     +  ++G + +A+   + +++    S + ++
Sbjct: 240 WVHALM-------IKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVS-WNSM 291

Query: 239 LSACQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
           L+    HG  ++A++  + +L   + PND     +L+  S A
Sbjct: 292 LTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHA 333



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 59/106 (55%)

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           ++   EGK +HAL+    +  ++ +QN L+ +YA CG +  A K+F  M  RD+V+W +L
Sbjct: 28  LNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTAL 87

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           + G + H   ++A+ L  +M +  +KP+  T   +L A    G  D
Sbjct: 88  ITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTD 133


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 181/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFT 64
           Y+R     +  +++     RN  SW A+I+G    G G  +   F+EMR+ GIDI D   
Sbjct: 181 YARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLV 240

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++S+VG    ++  + GKQ+H L+  +G++S +F+ N LV MYA C  I  A  +F  M 
Sbjct: 241 LSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMP 300

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +D++SW S+++G A HG + EA+ L+++M  + IKP+  TF+ +L AC HAG + +G +
Sbjct: 301 RKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRE 360

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M  D S+ P   +HYT ++ LL R+G L+EAE+ ++ +   P    + +LLSAC  
Sbjct: 361 LFRSMTTDYSINPS-LQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMR 419

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N E+ VR A RVLDL P DP+ Y+LLSNV    + W     +R LM +  +RK+PGYS
Sbjct: 420 HNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYS 479

Query: 305 WV 306
            +
Sbjct: 480 SI 481



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYF 63
            Y +C        ++  +  R+ +SW +I+          + L   + M    G+  D+F
Sbjct: 47  VYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHF 106

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
               IV A   +   + GKQ+HA      +  +  V++ L+ MY  CG  +DA  VF S+
Sbjct: 107 VFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSI 166

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
             ++ VSW S++ G A  G   EA+ LF Q
Sbjct: 167 LFKNSVSWTSMISGYARSGRKCEAMDLFLQ 196



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           ++H+ I K G+D +  + N L+ +Y  CG I  A ++F  M  RD VSW S+L       
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKAL 83

Query: 143 YSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQ 184
             R  + +   M   + ++PD   F  ++ AC   G++  G Q
Sbjct: 84  IPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQ 126


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/289 (41%), Positives = 181/289 (62%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ ++   N +SWNA+IAG+   G  E ALK F +M+   +  +  T   ++ A   ++ 
Sbjct: 344 LFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAV 403

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            ++G + H ++ + G+ S+V V N LV MYA CG+I DA KVF  M ++D  S +++++G
Sbjct: 404 LEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVG 463

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G S+E+++LFEQMQ T +KPD  TF+ VLSACCHAG +D+G QYF +M     + P
Sbjct: 464 YAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITP 523

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
              EHY  ++ LLGRAG  +EA   IN M   P   ++ +LLSAC+ H N ++  + A+ 
Sbjct: 524 A-MEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQH 582

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++ L P +PA YVLLSN+  A   WDD G +R  M +R ++KK G SW+
Sbjct: 583 LIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWI 631



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 102/184 (55%), Gaps = 7/184 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +  S ++ + V+  +  +N +SW A+IA +     G++AL  F EM+  GI  ++FT 
Sbjct: 110 YVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTF 169

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A   +    E    H  I K G++SNVFV N LV MYA  G I  A ++F  M +
Sbjct: 170 ASILPACTDLEVLGE---FHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQ 226

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWN+++ G   +G   +A++LF+++ K ++     T+  +++     G ++  ++ 
Sbjct: 227 RDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDV----ITWNTMMAGYAQCGDVENAVEL 282

Query: 186 FYLM 189
           F  M
Sbjct: 283 FEKM 286



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 8/169 (4%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   ++  +  R+ I+WN ++AG+   G  E A++ F +M +  +      I   V    
Sbjct: 247 DALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGS 306

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           V   FK        +F+I  + NV   N ++  +A  G + +A K+F +M E ++VSWN+
Sbjct: 307 VKEAFK--------LFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNA 358

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++ G + +G +  A++LF QMQ  ++KP+  TF +VL AC     +++G
Sbjct: 359 MIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQG 407



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 1/144 (0%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           + ++   C  G   +AL    +M + GI     T  S++          + K +HA + +
Sbjct: 33  DGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQ 92

Query: 91  IGYD-SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
             ++  ++ + N+LV +Y   G++ +A +VF  M  +++VSW +++   A H + +EA+ 
Sbjct: 93  TQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALG 152

Query: 150 LFEQMQKTEIKPDGTTFLVVLSAC 173
            F +MQ   I+P+  TF  +L AC
Sbjct: 153 FFYEMQDVGIQPNHFTFASILPAC 176


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 178/301 (59%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC      Q  +  + T++++SWNA+I+G    G GE AL    +M++      +FT 
Sbjct: 234 YARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTY 293

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S+  A   I   ++GK +HA + K G     F+ N L+ MYA  G+I+DA +VF  + +
Sbjct: 294 SSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVK 353

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VSWN++L GCA HG  +E +  FEQM +  I+P+  +FL VL+AC H+G +D+GL Y
Sbjct: 354 PDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYY 413

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM+    +E P   HY   V LLGR G L+ AE FI  M   P  +V+ ALL AC++H
Sbjct: 414 FELMKK-YKVE-PDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMH 471

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+ V +A+R  +L P+D    +LLSN+  +   W D   +R +M   G++K+P  SW
Sbjct: 472 KNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSW 531

Query: 306 V 306
           V
Sbjct: 532 V 532



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 139/286 (48%), Gaps = 27/286 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D + ++  + T++ ++W A+IAGF        AL  F +M + G+  ++FT+
Sbjct: 133 YAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTL 192

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A G   G   G Q+HA   K GY S+V+V + LV MYA CG ++ A   F  M  
Sbjct: 193 SSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPT 252

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC----------- 174
           +  VSWN+L+ G A  G    A+ L  +MQ+   +P   T+  V SAC            
Sbjct: 253 KSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWV 312

Query: 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
           HA  I  GL+    + N              ++ +  +AG +++A+   + + + P    
Sbjct: 313 HAHMIKSGLKLIAFIGN-------------TLLDMYAKAGSIDDAKRVFDRLVK-PDVVS 358

Query: 235 YKALLSACQVHG-NREIAVRSAKRV-LDLWPNDPAIYVLLSNVSKA 278
           +  +L+ C  HG  +E   R  + + + + PN+ +   +L+  S +
Sbjct: 359 WNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHS 404



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 76/143 (53%), Gaps = 1/143 (0%)

Query: 43  GEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY-DSNVFVQN 101
           G   L     +++  +  DY   + ++     +   ++G+ +HA +    + D+++ +QN
Sbjct: 68  GGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQN 127

Query: 102 RLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
            +V MYA CG ++DA ++F  M  +D+V+W +L+ G + +   R+A+ LF QM +  ++P
Sbjct: 128 IIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQP 187

Query: 162 DGTTFLVVLSACCHAGFIDKGLQ 184
           +  T   +L A      +D G Q
Sbjct: 188 NHFTLSSLLKASGSEHGLDPGTQ 210


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 180/301 (59%), Gaps = 14/301 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC    +    +  +  ++ +SWN++++GF   G  E+AL  F++M +AG++I+ FT 
Sbjct: 584 YARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTF 643

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S V A   I+  + GKQ+H +I K GYDS   V N L+ +YA CG I+D          
Sbjct: 644 GSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD---------- 693

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
              +SWNS++ G + HG   EA++LFE M++ ++ P+  TF+ VLSAC H G +D+G+ Y
Sbjct: 694 ---ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISY 750

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M    +L  P+ EHY  +V LLGR+G L+ A+ F+  M   P   V++ LLSAC VH
Sbjct: 751 FRSMSEAHNL-VPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVH 809

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N +I   +A  +L+L P D A YVL+SN+   +  WD     R +M +RG++K+PG SW
Sbjct: 810 KNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSW 869

Query: 306 V 306
           V
Sbjct: 870 V 870



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 14/170 (8%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+ +++ R+ +SW A+I+G    G  E+A+  F ++              ++ A   +
Sbjct: 219 KKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKV 264

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             F+ GKQ+H L+ K G+ S  +V N LV +Y+  G ++ A ++F  M +RD VS+NSL+
Sbjct: 265 EFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLI 324

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            G A  GY   A+ LF++M     KPD  T   +LSAC   G +  G Q+
Sbjct: 325 SGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQF 374



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 77/140 (55%)

Query: 45  QALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLV 104
           ++ + F++M+  GI  + FT  SI+     +     G+Q+H  + K G+  NV+V + L+
Sbjct: 421 KSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLI 480

Query: 105 FMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164
            MYA  G ++ A K+F  + E D+VSW +++ G   H    EA+ LF++MQ   IK D  
Sbjct: 481 DMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNI 540

Query: 165 TFLVVLSACCHAGFIDKGLQ 184
            F   +SAC     +D+G Q
Sbjct: 541 GFASAISACAGIQALDQGRQ 560



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 24/241 (9%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIV-GAIGVI 75
           NV+  +  R+   WN I   F       +    F  M    ++ D      ++ G  G  
Sbjct: 118 NVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNA 177

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             F+  +Q+HA     G++S+ F+ N L+ +Y   G ++ A KVF ++  RD VSW +++
Sbjct: 178 VSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMI 237

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G + +GY  EA+ LF Q              +VLSAC    F + G Q   L+      
Sbjct: 238 SGLSQNGYEEEAMLLFCQ--------------IVLSACTKVEFFEFGKQLHGLVLK---- 279

Query: 196 EPPRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG--NREIA 251
           +   +E Y   A+V L  R+G L+ AE   + MS+    S Y +L+S     G  NR +A
Sbjct: 280 QGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVS-YNSLISGLAQQGYINRALA 338

Query: 252 V 252
           +
Sbjct: 339 L 339



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 15/182 (8%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YSR  +    + ++  +  R+++S+N++I+G    G   +AL  F +M       D 
Sbjct: 293 VTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDC 352

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ A   +     GKQ H+   K G  S++ V+  L+ +Y  C  I  A++ F  
Sbjct: 353 VTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLC 412

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             + D ++               ++ Q+F QMQ   I P+  T+  +L  C   G  D G
Sbjct: 413 YGQLDNLN---------------KSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLG 457

Query: 183 LQ 184
            Q
Sbjct: 458 EQ 459


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 123/304 (40%), Positives = 185/304 (60%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+  S  D + V+  + +R+ +SWN IIAG+   G G+ A++   +M++  +  + 
Sbjct: 675 ISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNK 734

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F+  S++ A    S  +EGK++HA I K     +V V   L+ MYA CG+  +A +VF +
Sbjct: 735 FSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDN 794

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + E+++V+WN+++   A HG + +A+  F  M+K  IKPDG+TF  +LSAC HAG + +G
Sbjct: 795 IIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEG 854

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            Q F  M ++  +  P  EHY  +VGLLGRA    EAE+ IN M   P  +V++ LL AC
Sbjct: 855 YQIFSSMESEYGV-LPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGAC 913

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN  +A  +A   L L   +PA+Y+LLSNV  A   WDD   IR +M  RGIRK+PG
Sbjct: 914 RIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPG 973

Query: 303 YSWV 306
            SW+
Sbjct: 974 RSWI 977



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC S ++ QNV+   + R+ ISWN++IAG    GS E A K F EM+   ++ D  T 
Sbjct: 476 YRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITF 535

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++         + GKQ+H  I + G   +V + N L+ MY  CG++ DA  VF S+  
Sbjct: 536 ASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQH 595

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD++SW +++ GCA  G   +A++LF QMQ    +P  +TF  +L  C  +  +D+G + 
Sbjct: 596 RDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKV 655

Query: 186 F-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
             Y++ +   L+        A++    ++G + +A    + M
Sbjct: 656 IAYILNSGYELDTGVG---NALISAYSKSGSMTDAREVFDKM 694



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 130/248 (52%), Gaps = 5/248 (2%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           L I  Y +C S LD   V+  +  R+ ISWN++I+ +   G  ++A + F EM+ AG   
Sbjct: 67  LLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIP 126

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           +  T  SI+ A    +  + GK++H+ I K GY  +  VQN L+ MY  CG +  A +VF
Sbjct: 127 NKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVF 186

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           + +  RD+VS+N++L   A   Y +E + LF QM    I PD  T++ +L A      +D
Sbjct: 187 AGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLD 246

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALL 239
           +G +   L   +      R    TA+V +  R G ++ A ++F  +  R+    VY AL+
Sbjct: 247 EGKRIHKLTVEEGLNSDIRVG--TALVTMCVRCGDVDSAKQAFKGTADRD--VVVYNALI 302

Query: 240 SACQVHGN 247
           +A   HG+
Sbjct: 303 AALAQHGH 310



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 5/251 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+RC      + ++ ++  R+ ISWNAIIAG+       +A++ + +M+  G+    
Sbjct: 372 ISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGR 431

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   ++ A    S + +GK +H  I + G  SN  + N L+ MY  CG++ +A  VF  
Sbjct: 432 VTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEG 491

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              RD++SWNS++ G A HG    A +LF++MQ  E++PD  TF  VLS C +   ++ G
Sbjct: 492 TQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELG 551

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            Q +  +  +   L+        A++ +  R G L +A +  +S+      S + A++  
Sbjct: 552 KQIHGRITESGLQLDVNLG---NALINMYIRCGSLQDARNVFHSLQHRDVMS-WTAMIGG 607

Query: 242 CQVHGNREIAV 252
           C   G    A+
Sbjct: 608 CADQGEDMKAI 618



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 134/278 (48%), Gaps = 36/278 (12%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC S  D +NV+ S++ R+ +SW A+I G  + G   +A++ F +M+  G     
Sbjct: 574 INMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVK 633

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T +SI+      +   EGK++ A I   GY+ +  V N L+  Y+  G++ DA +VF  
Sbjct: 634 STFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDK 693

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--------- 173
           M  RD+VSWN ++ G A +G  + AV+   QMQ+ ++ P+  +F+ +L+AC         
Sbjct: 694 MPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEG 753

Query: 174 --CHAGFIDKGLQYFYLMRNDASLEPPRAE--------------------HYTAIVGLLG 211
              HA  + + LQ    +R  A+L    A+                     + A++    
Sbjct: 754 KRVHAEIVKRKLQGD--VRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYA 811

Query: 212 RAGFLNEAESFINSMSR---NPGPSVYKALLSACQVHG 246
           + G  ++A  F N M +    P  S + ++LSAC   G
Sbjct: 812 QHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAG 849



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 130/248 (52%), Gaps = 7/248 (2%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           RC      +  +     R+ + +NA+IA     G   +A + +  MR  G+ ++  T  S
Sbjct: 276 RCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLS 335

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           I+ A       + GK +H+ I + G+ S+V + N L+ MYA CG +  A ++F +M +RD
Sbjct: 336 ILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRD 395

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH-AGFIDKGLQYF 186
           L+SWN+++ G A      EA++L++QMQ   +KP   TFL +LSAC + + + D  + + 
Sbjct: 396 LISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHE 455

Query: 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES-FINSMSRNPGPSVYKALLSACQVH 245
            ++R+        A    A++ +  R G L EA++ F  + +R+     + ++++    H
Sbjct: 456 DILRSGIKSNGHLA---NALMNMYRRCGSLMEAQNVFEGTQARD--VISWNSMIAGHAQH 510

Query: 246 GNREIAVR 253
           G+ E A +
Sbjct: 511 GSYETAYK 518



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 108/223 (48%), Gaps = 2/223 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + V++ +  R+ +S+N ++  +      ++ L  F +M   GI  D  T 
Sbjct: 173 YGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTY 232

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A    S   EGK++H L  + G +S++ V   LV M   CG ++ A + F    +
Sbjct: 233 INLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTAD 292

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+V +N+L+   A HG++ EA + + +M+   +  + TT+L +L+AC  +  ++ G   
Sbjct: 293 RDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLI 352

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
              +  D        +   A++ +  R G L +A     +M +
Sbjct: 353 HSHISEDG--HSSDVQIGNALISMYARCGDLPKARELFYTMPK 393



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 80/150 (53%), Gaps = 2/150 (1%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             E K++HA + +     ++F+ N L+ MY  C ++ DA++VF  M  RD++SWNSL+  
Sbjct: 43  LPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISC 102

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A  G+ ++A QLFE+MQ     P+  T++ +L+AC     ++ G +    +        
Sbjct: 103 YAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRD 162

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
           PR ++  +++ + G+ G L  A      +S
Sbjct: 163 PRVQN--SLLSMYGKCGDLPRARQVFAGIS 190


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 182/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S    + V+  +  +N ISW A+I G+   G GE+A++ FSEM++ GI  D FT+
Sbjct: 322 YSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTL 381

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   ++  +EG Q H L    G    V V N LV +Y  CG+I DA+++F  M  
Sbjct: 382 GSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSF 441

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VSW +L++G A  G ++E + LFE+M    +KPDG TF+ VLSAC  +G +DKG  Y
Sbjct: 442 HDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSY 501

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ M+ D  +  P  +HYT ++ L  R+G+L +AE FI  M R P    +  LLSAC++ 
Sbjct: 502 FHSMQQDHDI-VPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLR 560

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ EI   +A+ +L L P +PA YVLL ++  +   W+D   +R  M +R ++K+PG SW
Sbjct: 561 GDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSW 620

Query: 306 V 306
           +
Sbjct: 621 I 621



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 121/220 (55%), Gaps = 2/220 (0%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           RC    + + ++ ++  R+ I+W  ++ G    G   +AL  F  MR  G+ ID +T  S
Sbjct: 223 RCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGS 282

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           I+ A G ++  +EGKQ+HA I +  Y+ NVFV + LV MY+ C ++  A  VF  M  ++
Sbjct: 283 ILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKN 342

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
           ++SW ++++G   +G   EAV++F +MQ+  IKPD  T   V+S+C +   +++G Q+  
Sbjct: 343 IISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHC 402

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
           L     S   P      A+V L G+ G + +A    + MS
Sbjct: 403 LAL--VSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMS 440



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 100/212 (47%), Gaps = 34/212 (16%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDIDYFTITSIVGA 71
           D + +++S+  R+ +S+NA++AGF   G+  +A   +  +   +AG+     T++ +V  
Sbjct: 95  DMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMV 154

Query: 72  IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-------- 123
              +     G+Q+H  I ++G+ +  F  + LV MYA  G I DA +VF  M        
Sbjct: 155 ASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMC 214

Query: 124 -----------------------DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
                                  +ERD ++W +++ G   +G   EA+ +F +M+   + 
Sbjct: 215 NTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVG 274

Query: 161 PDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN 191
            D  TF  +L+AC     +++G Q + Y+ R 
Sbjct: 275 IDQYTFGSILTACGALAALEEGKQIHAYITRT 306



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 16/123 (13%)

Query: 84  MHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           +HALI + + + S  ++ N L+  YA  G +  A +VF +M  R+LV+ NSLL   A  G
Sbjct: 32  VHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAG 91

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF------IDKGLQYFYLMRNDASLE 196
             R+  +LF  + +     D  ++  +L     AGF            Y  L+R++A + 
Sbjct: 92  LVRDMERLFTSLPQR----DAVSYNALL-----AGFSRAGAHARAAGAYVALLRDEAGVR 142

Query: 197 PPR 199
           P R
Sbjct: 143 PSR 145



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 51/244 (20%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C S  D   ++  +   +Q+SW A++ G+   G  ++ +  F +M   G+  D 
Sbjct: 420 VTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDG 479

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T       IGV+S                                  G ++     F S
Sbjct: 480 VTF------IGVLSACSRS-----------------------------GLVDKGRSYFHS 504

Query: 123 MDE-RDLVS----WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           M +  D+V     +  ++   +  G+ ++A +  +QM +    PD   +  +LSAC   G
Sbjct: 505 MQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRC---PDAFGWATLLSACRLRG 561

Query: 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM-----SRNPGP 232
            ++ G    +   N   L+P     Y  +  +    G  N+       M      + PG 
Sbjct: 562 DMEIGK---WAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGC 618

Query: 233 SVYK 236
           S  K
Sbjct: 619 SWIK 622


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/306 (38%), Positives = 189/306 (61%), Gaps = 11/306 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGF-----CNLGSGEQALKCFSEMRQAGIDI 60
           Y++C    D   V+ +++ R+ I+WN IIA       CNLG     L+  S MR  G+  
Sbjct: 520 YAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLG-----LRMISRMRTEGVTP 574

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D  T+ SI+    +++  ++GK++H  IFK+G +S+V V N L+ MY+ CG++ ++ +VF
Sbjct: 575 DMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVF 634

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M  +D+V+W +L+  C  +G  ++AV+ F +M+   I PD   F+ ++ AC H+G ++
Sbjct: 635 KLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVE 694

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +GL YF+ M+ D  +E PR EHY  +V LL R+  L++AE FI SM   P  S++ ALLS
Sbjct: 695 EGLNYFHRMKKDYKIE-PRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLS 753

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           AC++ G+ EIA R ++R+++L P+D   YVL+SNV  A   WD    IR  +  RG++K 
Sbjct: 754 ACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKD 813

Query: 301 PGYSWV 306
           PG SW+
Sbjct: 814 PGCSWM 819



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 129/254 (50%), Gaps = 14/254 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C + L  Q V+S ++ ++ +SWN++I  +   GS ++A+K F +M +  +  D  T 
Sbjct: 420 YAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTY 478

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++     +     GK++H  + K+G++SN+ V N LV MYA CG + D+ KVF +M  
Sbjct: 479 VMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKA 538

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RD+++WN+++  C H       +++  +M+   + PD  T L +L  C       +G + 
Sbjct: 539 RDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEI 598

Query: 185 ---YFYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
               F L + +D  +     E Y+       + G L  +      M +      + AL+S
Sbjct: 599 HGCIFKLGLESDVPVGNVLIEMYS-------KCGSLRNSFQVFKLM-KTKDVVTWTALIS 650

Query: 241 ACQVHGNREIAVRS 254
           AC ++G  + AVR+
Sbjct: 651 ACGMYGEGKKAVRA 664



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 94/167 (56%), Gaps = 1/167 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ +SWN++I+G+   G   +AL+ +   R  G+  D +T++S++ A G +
Sbjct: 229 RKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGL 288

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              +EG  +H LI KIG   +V V N L+ MY     + D  ++F  M  RD VSWN+++
Sbjct: 289 GSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMI 348

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            G +  G   E+++LF +M   + KPD  T   +L AC H G ++ G
Sbjct: 349 CGYSQVGLYEESIKLFMEMV-NQFKPDLLTITSILQACGHLGDLEFG 394



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 87/159 (54%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           + N   WN+II    + G   +AL  +SE ++  +  D +T  S++ A   +  F+  K 
Sbjct: 136 SNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKS 195

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +H  +  +G+ S++++ N L+ MY     ++ A KVF  M  RD+VSWNSL+ G   +GY
Sbjct: 196 IHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 255

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             EA++++ + +   + PD  T   VL AC   G +++G
Sbjct: 256 WNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG 294


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/306 (38%), Positives = 189/306 (61%), Gaps = 11/306 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGF-----CNLGSGEQALKCFSEMRQAGIDI 60
           Y++C    D   V+ +++ R+ I+WN IIA       CNLG     L+  S MR  G+  
Sbjct: 461 YAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLG-----LRMISRMRTEGVTP 515

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D  T+ SI+    +++  ++GK++H  IFK+G +S+V V N L+ MY+ CG++ ++ +VF
Sbjct: 516 DMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVF 575

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M  +D+V+W +L+  C  +G  ++AV+ F +M+   I PD   F+ ++ AC H+G ++
Sbjct: 576 KLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVE 635

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +GL YF+ M+ D  +E PR EHY  +V LL R+  L++AE FI SM   P  S++ ALLS
Sbjct: 636 EGLNYFHRMKKDYKIE-PRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLS 694

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           AC++ G+ EIA R ++R+++L P+D   YVL+SN+  A   WD    IR  +  RG++K 
Sbjct: 695 ACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKD 754

Query: 301 PGYSWV 306
           PG SW+
Sbjct: 755 PGCSWM 760



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 129/254 (50%), Gaps = 14/254 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C + L  Q V+S ++ ++ +SWN++I  +   GS ++A+K F +M +  +  D  T 
Sbjct: 361 YAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTY 419

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++     +     GK++H  + K+G++SN+ V N LV MYA CG + D+ KVF +M  
Sbjct: 420 VMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKA 479

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RD+++WN+++  C H       +++  +M+   + PD  T L +L  C       +G + 
Sbjct: 480 RDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEI 539

Query: 185 ---YFYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
               F L + +D  +     E Y+       + G L  +      M +      + AL+S
Sbjct: 540 HGCIFKLGLESDVPVGNVLIEMYS-------KCGSLRNSFQVFKLM-KTKDVVTWTALIS 591

Query: 241 ACQVHGNREIAVRS 254
           AC ++G  + AVR+
Sbjct: 592 ACGMYGEGKKAVRA 605



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 97/177 (54%), Gaps = 1/177 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R +     + V+  +  R+ +SWN++I+G+   G   +AL+ +   R  G+  D +T+
Sbjct: 160 YCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTM 219

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A G +   +EG  +H LI KIG   +V V N L+ MY     + D  ++F  M  
Sbjct: 220 SSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVL 279

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           RD VSWN+++ G +  G   E+++LF +M   + KPD  T   +L AC H G ++ G
Sbjct: 280 RDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTITSILQACGHLGDLEFG 335



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 87/159 (54%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           + N   WN+II    + G   +AL  +SE ++  +  D +T  S++ A   +  F+  K 
Sbjct: 77  SNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKS 136

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +H  +  +G+ S++++ N L+ MY     ++ A KVF  M  RD+VSWNSL+ G   +GY
Sbjct: 137 IHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 196

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             EA++++ + +   + PD  T   VL AC   G +++G
Sbjct: 197 WNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG 235


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 180/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    +   ++S       +SWN +I G+   G+GE+AL  F +M +  +     T 
Sbjct: 392 YAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTY 451

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   I+  + G Q+H+L  K  YD N  V N L+ MYA CG I DA  VF  + E
Sbjct: 452 SSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLRE 511

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VSWN+++ G + HG   EA++ FE M +TE KPD  TF+ +LSAC +AG +D+G  Y
Sbjct: 512 HDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAY 571

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  +  +EP  AEHYT +V LLGR+G L++A   ++ +   P   V++ALLSAC +H
Sbjct: 572 FKSMVEEYDIEPC-AEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIH 630

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + E+   SA+RVL++ P D A +VLLSN+      W +   IRT M  +GIRK+PG SW
Sbjct: 631 NDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSW 690

Query: 306 V 306
           +
Sbjct: 691 I 691



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 130/267 (48%), Gaps = 5/267 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   V+  +   + I W+ +IA +      E+A++ F  MR+  +  + FT+ S++ A  
Sbjct: 299 DALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACA 358

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +   + G Q+H  + K+G D NVFV N L+ MYA CG + ++ ++FS       VSWN+
Sbjct: 359 SLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNT 418

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           +++G    G   +A+ LF+ M + +++    T+  VL AC     ++ G Q   L  +  
Sbjct: 419 VIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSL--SVK 476

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           ++         A++ +  + G + +A   +  M R      + A++S   VHG    A++
Sbjct: 477 TIYDKNTVVGNALIDMYAKCGNIKDAR-LVFDMLREHDQVSWNAMISGYSVHGLYGEALK 535

Query: 254 SAKRVLDLW--PNDPAIYVLLSNVSKA 278
           + + +L+    P+      +LS  S A
Sbjct: 536 TFESMLETECKPDKVTFVGILSACSNA 562



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 92/178 (51%), Gaps = 2/178 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C  +   + V+ ++  ++ +SW  ++A +      E++LK FS MR  G   + FT 
Sbjct: 190 YSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTF 249

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +  F  GK +H   FK  Y   +FV   L+ +Y   G ++DA +VF  M +
Sbjct: 250 ASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPK 309

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            D++ W+ ++   A    S EA+++F +M++  + P+  T   +L AC  A  +D  L
Sbjct: 310 DDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQAC--ASLVDLQL 365



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 91/168 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y + DS  D   ++  +  RN +S+  +I G+       +A+  FS ++  G +++ F  
Sbjct: 89  YVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVF 148

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++  +      K G  +HA ++K+G+DS+ FV   L+  Y++CG    A +VF +++ 
Sbjct: 149 STVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEY 208

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +D+VSW  ++     +    E+++LF +M+    KP+  TF  VL AC
Sbjct: 209 KDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKAC 256



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK +H  I K G   ++F  N L+  Y    ++ DA K+F  M +R+ VS+ +L+ G + 
Sbjct: 63  GKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQ 122

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
                EA+ LF ++Q    + +   F  VL
Sbjct: 123 CLRFSEAIGLFSRLQGEGHELNPFVFSTVL 152


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 184/301 (61%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC        V+  + ++N +SWNA+IAGF   G GE  L  F+EM++ G +  +FT 
Sbjct: 210 YARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTY 269

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S+  AI  I   ++GK +HA + K G   + FV N ++ MYA  G++ DA KVF  +D+
Sbjct: 270 SSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDK 329

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+V+WNS+L   A +G  REAV  FE+M+K  +  +  TFL +L+AC H G + +G QY
Sbjct: 330 KDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQY 389

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M+ + +LE P  +HY  +V LLGRAG LN+A  FI  M   P  +V+ ALL +C++H
Sbjct: 390 FDMMK-EYNLE-PEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMH 447

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N +I   +A  V +L P+D    VLL N+  +T  WD A  +R +M   G++K+P  SW
Sbjct: 448 KNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSW 507

Query: 306 V 306
           V
Sbjct: 508 V 508



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 93/180 (51%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C +  D + V+  +  R+  SW ++IAG+      ++AL     M +     + 
Sbjct: 106 IHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNG 165

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++ A G  +    G+Q+HAL  K  +  +V+V + L+ MYA CG ++ A  VF  
Sbjct: 166 FTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQ 225

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++ ++ VSWN+L+ G A  G     + +F +MQ+   +    T+  V SA    G +++G
Sbjct: 226 LESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG 285



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 56/106 (52%)

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
           S++ A        + + +HA +    +  +VF+ N L+ +Y  CGA+ DA +VF  M  R
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           D+ SW SL+ G A +    EA+ L   M +   KP+G TF  +L A
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKA 174


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 181/301 (60%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+R     D Q V+ ++ +RN +SWNA+IAG       E+AL+ F  M + G    +F+ 
Sbjct: 197 YTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSY 256

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+ GA       ++GK +HA + K G     F  N L+ MYA  G+I+DA K+F  + +
Sbjct: 257 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 316

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWNSLL   A HG+  EAV  FE+M++  I+P+  +FL VL+AC H+G +D+G  Y
Sbjct: 317 RDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHY 376

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           + LM+ D  +    A HY  IV LLGRAG LN A  FI  M   P  +++KALL+AC++H
Sbjct: 377 YELMKKDGIV--LEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH 434

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +A+ V +L P+DP  +V+L N+  +   W+DA  +R  M   G++K+P  SW
Sbjct: 435 KNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSW 494

Query: 306 V 306
           V
Sbjct: 495 V 495



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 148/295 (50%), Gaps = 8/295 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  + + V+  +  R+ ++W  +I+G+        AL  F++M + G   + FT+
Sbjct: 96  YAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTL 155

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A         G Q+H    K G+DSNV V + L+ +Y   G ++DA  VF +++ 
Sbjct: 156 SSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALES 215

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           R+ VSWN+L+ G A    + +A++LF+ M +   +P   ++  +  AC   GF+++G   
Sbjct: 216 RNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWV 275

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + Y++++   L    A     ++ +  ++G +++A    + +++    S + +LL+A   
Sbjct: 276 HAYMIKSGEKLV---AFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS-WNSLLTAYAQ 331

Query: 245 H--GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
           H  GN  +      R   + PN+ +   +L+  S  +   D+      LM   GI
Sbjct: 332 HGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSH-SGLLDEGWHYYELMKKDGI 385



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 1/132 (0%)

Query: 42  SGEQALKCFS-EMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQ 100
           S +++LK  S ++  + I +D     +++    V     +G+ +H  + +  +  ++ + 
Sbjct: 30  SDDESLKFPSNDLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMN 89

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
           N L+ MYA CG++ +A KVF  M ERD V+W +L+ G + H    +A+ LF QM +    
Sbjct: 90  NTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFS 149

Query: 161 PDGTTFLVVLSA 172
           P+  T   V+ A
Sbjct: 150 PNEFTLSSVIKA 161


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 119/290 (41%), Positives = 180/290 (62%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +V+  +  ++ ISW +++ G  + GS E+AL+ F EMR  GI  D   I +++ A   ++
Sbjct: 23  DVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELT 82

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             + GKQ+HA   K G  S++ V N LV MYA CG I DANKVF SM+ +D+++W +L++
Sbjct: 83  VLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIV 142

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A +G  RE++  +  M  + +KPD  TF+ +L AC HAG ++ G  YF  M     ++
Sbjct: 143 GYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIK 202

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
           P   EHY  ++ LLGR+G L EA+  +N M+  P  +V+KALL+AC+VHGN E+  R+A 
Sbjct: 203 PG-PEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAAN 261

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            + +L P +   YVLLSN+  A   W++A   R LM  RG+ K+PG SW+
Sbjct: 262 NLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWI 311



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 91/238 (38%), Gaps = 51/238 (21%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   V+ S+  ++ I+W A+I G+   G G ++L  +++M  +G+  D+ T 
Sbjct: 113 YAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITF 172

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
                 IG                             L+F  +  G +      F SM+E
Sbjct: 173 ------IG-----------------------------LLFACSHAGLVEHGRSYFQSMEE 197

Query: 126 RDLVSWNSLLLGC-----AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
              +        C        G   EA +L  QM    ++PD T +  +L+AC   G ++
Sbjct: 198 VYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMA---VQPDATVWKALLAACRVHGNVE 254

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESF-----INSMSRNPGPS 233
            G +      N   LEP  A  Y  +  L   AG   EA        +  +S+ PG S
Sbjct: 255 LGER---AANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCS 309


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 190/304 (62%), Gaps = 7/304 (2%)

Query: 6   YSRC---DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           YS+C   DS+L+    + S+   N + W  II+GF   G GE+AL  F +MR+     D 
Sbjct: 393 YSKCGFTDSALE---AFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDE 449

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F+ +S++ A+   +  ++G+ +HA + K G D  ++V + ++ MY+ CG + DA KVFS 
Sbjct: 450 FSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSV 509

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E+++VSWNS++ G A +G+ +EA+ LF++M  + I P   TF+ +L AC HAG +++G
Sbjct: 510 MPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHAGLVEEG 569

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             ++ LM ++  + PP  EH T +V LLGRAG+L EAE+F+ S S +  P ++ +LLSAC
Sbjct: 570 RNFYNLMVHNYGI-PPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSKEPGIWGSLLSAC 628

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            VH N ++  R+A+  L L P+  + Y  LSN+  + + W +   IR LM + G+ K+PG
Sbjct: 629 GVHKNSDVGSRAAQHCLFLEPHYSSSYTALSNIYASKELWSEVSRIRDLMKDMGVEKEPG 688

Query: 303 YSWV 306
            SW+
Sbjct: 689 CSWI 692



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 132/266 (49%), Gaps = 29/266 (10%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA----GI 58
           I  YS+ D   + + ++  +  R+ +SWN++IAG+   G  E+A   F  M  +     +
Sbjct: 83  ISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCENWKL 142

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
            +  FT+ +++ A G +   + GK +H    KIG+DS++FV    V+MY  CG ++ A  
Sbjct: 143 LVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGL 202

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA------ 172
            F  ++ +D+V+WN+++ G A + Y  EA++LF QM+    KP+ TTF  VL A      
Sbjct: 203 AFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSD 262

Query: 173 -----CCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
                C HA  +  G           S++   A   TA+V +  +   + + E     MS
Sbjct: 263 SAVGRCFHAKVLKLG----------CSMDVFVA---TALVDMYSKFYDIEDVERAFGEMS 309

Query: 228 RNPGPSVYKALLSACQVHGNREIAVR 253
           +    S + AL++   + G  E A+R
Sbjct: 310 KRNLVS-FNALITGYSLMGKYEEALR 334



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 124/256 (48%), Gaps = 15/256 (5%)

Query: 3   ILTYSRCDSSLDFQNV-YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           +  Y +C   LD   + +  +  ++ ++WN +I G+      E+A++ F +M   G   +
Sbjct: 188 VYMYCKC-GILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPN 246

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             T   ++ A   +S    G+  HA + K+G   +VFV   LV MY+    I D  + F 
Sbjct: 247 DTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFG 306

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M +R+LVS+N+L+ G +  G   EA++++ Q+Q   ++PD  TF+ + S+C  +  + +
Sbjct: 307 EMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAE 366

Query: 182 GLQYF-----YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYK 236
           G Q       + + +D S+         +IV    + GF + A     S++R P    + 
Sbjct: 367 GAQVHVHSVKFGLDSDVSVG-------NSIVNFYSKCGFTDSALEAFESINR-PNSVCWA 418

Query: 237 ALLSACQVHGNREIAV 252
            ++S    +G  E A+
Sbjct: 419 GIISGFAQNGEGEKAL 434



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+     D +  +  +  RN +S+NA+I G+  +G  E+AL+ +S+++  G++ D FT 
Sbjct: 292 YSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTF 351

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             +  +  V S   EG Q+H    K G DS+V V N +V  Y+ CG  + A + F S++ 
Sbjct: 352 VGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINR 411

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            + V W  ++ G A +G   +A+  F +M+K   K D  +   V+ A      +++G   
Sbjct: 412 PNSVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHL 471

Query: 185 YFYLMRN--DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           + ++M++  D ++        +A++ +  + G + +A+   + M
Sbjct: 472 HAHVMKSGLDCTIYVG-----SAVIDMYSKCGMVEDAQKVFSVM 510



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 4/152 (2%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N + W + I      G  +QAL CF +M +AGI+ +  T ++ + A    +       +H
Sbjct: 5   NVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATSLH 64

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
            LI K G+ + +FV + L+ MY+    I +A  +F  M ERD VSWNS++ G +  G + 
Sbjct: 65  CLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNE 124

Query: 146 EAVQLFEQM----QKTEIKPDGTTFLVVLSAC 173
           EA  LF  M    +  ++     T   VL AC
Sbjct: 125 EACGLFCSMINSCENWKLLVSDFTLATVLKAC 156


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 178/301 (59%), Gaps = 1/301 (0%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            Y +C    +   ++  +   ++++W  +I+G+   G  + AL  +  MR +G+  D +T 
Sbjct: 1144 YIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTF 1203

Query: 66   TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             +++ A   ++  ++GKQ+HA + K+ Y  + FV   LV MY  CG++ DA +VF  MD 
Sbjct: 1204 ATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDV 1263

Query: 126  RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            R +V WN++LLG A HG+  EA+ LF  MQ   I+PD  TF+ VLSAC H+G   +  +Y
Sbjct: 1264 RKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKY 1323

Query: 186  FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            F  M     +  P  EHY+ +V  LGRAG + EAE+ I SM      S+Y+ALL AC+  
Sbjct: 1324 FDAMFKTYGI-TPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTK 1382

Query: 246  GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            G+ E A R A ++L L P+D + YVLLSN+  A+  WDD  D R +M  + ++K PG+SW
Sbjct: 1383 GDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSW 1442

Query: 306  V 306
            +
Sbjct: 1443 I 1443



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 110/201 (54%), Gaps = 8/201 (3%)

Query: 29   SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
            SWNAI+ G+       +AL+ FS M + GI ID  T+ + + A G +   K+GKQ+ A  
Sbjct: 1066 SWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYA 1125

Query: 89   FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
             K+G++++++V + ++ MY  CG + +A ++F  +   D V+W +++ G   +G    A+
Sbjct: 1126 IKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHAL 1185

Query: 149  QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHY--TA 205
             ++  M+ + ++PD  TF  ++ A      +++G Q +  +++ D SL     +H+  T+
Sbjct: 1186 SVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSL-----DHFVGTS 1240

Query: 206  IVGLLGRAGFLNEAESFINSM 226
            +V +  + G + +A      M
Sbjct: 1241 LVDMYCKCGSVQDAYRVFRKM 1261



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 23/211 (10%)

Query: 26   NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
            N  +WN  +  F + G    A+ CF  + ++ I  D  T+  I+ A         G+Q+H
Sbjct: 858  NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIH 917

Query: 86   ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
            AL+ K  +   V V N L+ MY+  G +  A K F +  E DL+SWN+++   A +    
Sbjct: 918  ALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEM 977

Query: 146  EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL------------MRNDA 193
            EA+  F  + +  +KPD  T   VL AC      D+G +YF L            + ND+
Sbjct: 978  EAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYFTLGSQVHVYAIKCGIINDS 1033

Query: 194  SLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
             +        TA++ L  + G ++EAE  ++
Sbjct: 1034 FVS-------TALIDLYSKGGKMDEAEFLLH 1057



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 7/174 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGE-----QALKCFSEMRQAG 57
           I  YS+C S    + V+     R+ ++WN+I+A +            +  + F  +R+ G
Sbjct: 653 ITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFG 712

Query: 58  IDIDYFTITSIVGAIGVISGFKE-GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
             I   T+  ++    ++SGF +  + +H    KIG++ ++FV   LV +Y   G +  A
Sbjct: 713 FSITRLTLAPLLKLC-LLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQA 771

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
             +F  M ERD V WN +L     + +  EA++ F    ++   PD +    V+
Sbjct: 772 RLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVI 825



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 28/209 (13%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ + WN ++  +      ++AL+ FS   ++G   D+  +  ++G  GV S 
Sbjct: 774 LFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIG--GVNSD 831

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
               ++ HA                 V  YA+        K+F      ++ +WN  L  
Sbjct: 832 VSNNRKRHA---------------EQVKAYAM--------KMFPFDQGSNIFAWNKKLTE 868

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
             H G    A+  F+ + ++ I  D  T +++LSA   A  +D G Q   L+    S   
Sbjct: 869 FLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIK--SSFA 926

Query: 198 PRAEHYTAIVGLLGRAGFLNEAE-SFINS 225
           P      +++ +  +AG +  AE +FINS
Sbjct: 927 PVVPVSNSLMNMYSKAGVVYAAEKTFINS 955



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            ++  K GK+ HA I   G   + ++ N L+ MY+ CG++  A +VF    +RDLV+WNS
Sbjct: 623 AMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNS 682

Query: 134 LLLGCAH 140
           +L   A 
Sbjct: 683 ILAAYAQ 689


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 178/301 (59%), Gaps = 1/301 (0%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            Y +C    +   ++  +   ++++W  +I+G+   G  + AL  +  MR +G+  D +T 
Sbjct: 1144 YIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTF 1203

Query: 66   TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             +++ A   ++  ++GKQ+HA + K+ Y  + FV   LV MY  CG++ DA +VF  MD 
Sbjct: 1204 ATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDV 1263

Query: 126  RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            R +V WN++LLG A HG+  EA+ LF  MQ   I+PD  TF+ VLSAC H+G   +  +Y
Sbjct: 1264 RKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKY 1323

Query: 186  FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            F  M     +  P  EHY+ +V  LGRAG + EAE+ I SM      S+Y+ALL AC+  
Sbjct: 1324 FDAMFKTYGI-TPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTK 1382

Query: 246  GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            G+ E A R A ++L L P+D + YVLLSN+  A+  WDD  D R +M  + ++K PG+SW
Sbjct: 1383 GDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSW 1442

Query: 306  V 306
            +
Sbjct: 1443 I 1443



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 110/201 (54%), Gaps = 8/201 (3%)

Query: 29   SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
            SWNAI+ G+       +AL+ FS M + GI ID  T+ + + A G +   K+GKQ+ A  
Sbjct: 1066 SWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYA 1125

Query: 89   FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
             K+G++++++V + ++ MY  CG + +A ++F  +   D V+W +++ G   +G    A+
Sbjct: 1126 IKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHAL 1185

Query: 149  QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHY--TA 205
             ++  M+ + ++PD  TF  ++ A      +++G Q +  +++ D SL     +H+  T+
Sbjct: 1186 SVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSL-----DHFVGTS 1240

Query: 206  IVGLLGRAGFLNEAESFINSM 226
            +V +  + G + +A      M
Sbjct: 1241 LVDMYCKCGSVQDAYRVFRKM 1261



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 23/211 (10%)

Query: 26   NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
            N  +WN  +  F + G    A+ CF  + ++ I  D  T+  I+ A         G+Q+H
Sbjct: 858  NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIH 917

Query: 86   ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
            AL+ K  +   V V N L+ MY+  G +  A K F +  E DL+SWN+++   A +    
Sbjct: 918  ALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEM 977

Query: 146  EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL------------MRNDA 193
            EA+  F  + +  +KPD  T   VL AC      D+G +YF L            + ND+
Sbjct: 978  EAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYFTLGSQVHVYAIKCGIINDS 1033

Query: 194  SLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
             +        TA++ L  + G ++EAE  ++
Sbjct: 1034 FVS-------TALIDLYSKGGKMDEAEFLLH 1057



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 7/174 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGE-----QALKCFSEMRQAG 57
           I  YS+C S    + V+     R+ ++WN+I+A +            +  + F  +R+ G
Sbjct: 653 ITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFG 712

Query: 58  IDIDYFTITSIVGAIGVISGFKE-GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
             I   T+  ++    ++SGF +  + +H    KIG++ ++FV   LV +Y   G +  A
Sbjct: 713 FSITRLTLAPLLKLC-LLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQA 771

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
             +F  M ERD V WN +L     + +  EA++ F    ++   PD +    V+
Sbjct: 772 RLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVI 825



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            ++  K GK+ HA I   G   + ++ N L+ MY+ CG++  A +VF    +RDLV+WNS
Sbjct: 623 AMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNS 682

Query: 134 LLLGCAH 140
           +L   A 
Sbjct: 683 ILAAYAQ 689



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 28/209 (13%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ + WN ++  +      ++AL+ FS   ++G   D+  +  ++G  GV S 
Sbjct: 774 LFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIG--GVNSD 831

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
               ++ HA                 V  YA+        K+F      ++ +WN  L  
Sbjct: 832 VSNNRKRHA---------------EQVKAYAM--------KMFPFDQGSNIFAWNKKLTE 868

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
             H G    A+  F+ + ++ I  D  T +++LSA   A  +D G Q   L+    S   
Sbjct: 869 FLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIK--SSFA 926

Query: 198 PRAEHYTAIVGLLGRAGFLNEAE-SFINS 225
           P      +++ +  +AG +  AE +FINS
Sbjct: 927 PVVPVSNSLMNMYSKAGVVYAAEKTFINS 955


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 184/301 (61%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC        V+  + ++N +SWNA+IAGF   G GE  L  F+EM++ G +  +FT 
Sbjct: 210 YARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTY 269

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S+  AI  I   ++GK +HA + K G   + FV N ++ MYA  G++ DA KVF  +D+
Sbjct: 270 SSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDK 329

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+V+WNS+L   A +G  REAV  FE+M+K  +  +  TFL +L+AC H G + +G QY
Sbjct: 330 KDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQY 389

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M+ + +LE P  +HY  +V LLGRAG LN+A  FI  M   P  +V+ ALL +C++H
Sbjct: 390 FDMMK-EYNLE-PEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMH 447

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N +I   +A  V +L P+D    VLL N+  +T  WD A  +R +M   G++K+P  SW
Sbjct: 448 KNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSW 507

Query: 306 V 306
           V
Sbjct: 508 V 508



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 93/180 (51%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C +  D + V+  +  R+  SW ++IAG+      ++AL     M +     + 
Sbjct: 106 IHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNG 165

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++ A G  +    G+Q+HAL  K  +  +V+V + L+ MYA CG ++ A  VF  
Sbjct: 166 FTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQ 225

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++ ++ VSWN+L+ G A  G     + +F +MQ+   +    T+  V SA    G +++G
Sbjct: 226 LESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG 285



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 56/106 (52%)

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
           S++ A        + + +HA +    +  +VF+ N L+ +Y  CGA+ DA +VF  M  R
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           D+ SW SL+ G A +    EA+ L   M +   KP+G TF  +L A
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKA 174


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 183/301 (60%), Gaps = 1/301 (0%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            Y +C   ++   V++ +   + ++W ++I+G  + G+ +QAL+ +  MRQ+ +  D +T 
Sbjct: 1152 YIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTF 1211

Query: 66   TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             +++ A   ++  ++G+Q+HA + K+   S+ FV   LV MYA CG I DA ++F  M+ 
Sbjct: 1212 ATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNV 1271

Query: 126  RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            R++  WN++L+G A HG + EAV LF+ M+   I+PD  +F+ +LSAC HAG   +  +Y
Sbjct: 1272 RNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEY 1331

Query: 186  FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             + M ND  +E P  EHY+ +V  LGRAG + EA+  I +M      S+ +ALL AC++ 
Sbjct: 1332 LHSMPNDYGIE-PEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQ 1390

Query: 246  GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            G+ E   R A R+  L P D A YVLLSN+  A + WDD  D R +M  + ++K PG+SW
Sbjct: 1391 GDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSW 1450

Query: 306  V 306
            +
Sbjct: 1451 I 1451



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 123/225 (54%), Gaps = 7/225 (3%)

Query: 30   WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
            WNA++ G+     G++AL+ FS + ++G   D  T+ +   A G +    +GKQ+HA   
Sbjct: 1075 WNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAI 1134

Query: 90   KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
            K G+DS++ V + ++ MY  CG + +A  VF+ +   D V+W S++ GC  +G   +A++
Sbjct: 1135 KAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALR 1194

Query: 150  LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVG 208
            ++ +M+++ + PD  TF  ++ A      +++G Q +  +++ D   +P      T++V 
Sbjct: 1195 IYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG---TSLVD 1251

Query: 209  LLGRAGFLNEAESFINSMS-RNPGPSVYKALLSACQVHGNREIAV 252
            +  + G + +A      M+ RN   +++ A+L     HGN E AV
Sbjct: 1252 MYAKCGNIEDAYRLFKKMNVRN--IALWNAMLVGLAQHGNAEEAV 1294



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 5/193 (2%)

Query: 30   WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
            WN  ++     G    A++CF  M    ID D  T+  ++ A+      + GKQ+H +  
Sbjct: 872  WNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAV 931

Query: 90   KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
            K G DS+V V N LV MY+  G    A +VF+ M   DL+SWNS++  CA      E+V 
Sbjct: 932  KSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVN 991

Query: 150  LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY--TAIV 207
            LF  +    +KPD  T   VL AC  +  ID GL     +   A      A+ +  T ++
Sbjct: 992  LFIDLLHEGLKPDHFTLASVLRAC--SSLID-GLNISRQIHVHALKTGNIADSFVATTLI 1048

Query: 208  GLLGRAGFLNEAE 220
             +  ++G + EAE
Sbjct: 1049 DVYSKSGKMEEAE 1061



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 6/185 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFC-----NLGSGEQALKCFSEMRQAG 57
           +  YS+C S    + V+ +   R+ ++WNAI+  +      N G+ ++ L  F  +R + 
Sbjct: 663 LTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASL 722

Query: 58  IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
                 T+  ++            + +H    KIG + +VFV   LV +Y+ CG + DA 
Sbjct: 723 GSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDAR 782

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
            +F  M ERD+V WN +L G    G  +EA QLF +  ++ ++PD  +  ++L+      
Sbjct: 783 LLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVN 842

Query: 178 FIDKG 182
           + D+G
Sbjct: 843 W-DEG 846



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 126/257 (49%), Gaps = 10/257 (3%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            YS+   +   + V++ ++  + ISWN++I+        E+++  F ++   G+  D+FT+
Sbjct: 949  YSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTL 1008

Query: 66   TSIVGAIG-VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++ A   +I G    +Q+H    K G  ++ FV   L+ +Y+  G + +A  +F + D
Sbjct: 1009 ASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKD 1068

Query: 125  ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            + DL  WN+++ G       ++A++LF  + K+  K D  T      AC     +D+G Q
Sbjct: 1069 DLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQ 1128

Query: 185  -YFYLMRN--DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
             + + ++   D+ L        + I+ +  + G +  A    N +S  P    + +++S 
Sbjct: 1129 IHAHAIKAGFDSDLHV-----NSGILDMYIKCGDMVNAGIVFNYISA-PDDVAWTSMISG 1182

Query: 242  CQVHGNREIAVRSAKRV 258
            C  +GN + A+R   R+
Sbjct: 1183 CVDNGNEDQALRIYHRM 1199



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 25/179 (13%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D + ++  +R R+ + WN ++ G+  LG  ++A + FSE  ++G+  D F++
Sbjct: 772 YSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSV 831

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             I+  +                 ++ +D   ++ ++ V  YA   +++D        D 
Sbjct: 832 QLILNGVS----------------EVNWDEGKWLADQ-VQAYAAKLSLSD--------DN 866

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            D+  WN  L  C   G +  A++ F  M    I  D  T LVVL+A      ++ G Q
Sbjct: 867 PDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQ 925



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 5/102 (4%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA- 139
           GK  HA I   G   + F+ N L+ MY+ CG+++ A +VF +  ERDLV+WN++L   A 
Sbjct: 640 GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 699

Query: 140 ----HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
               + G ++E + LF  ++ +       T   VL  C ++G
Sbjct: 700 SVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSG 741


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  240 bits (613), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 185/301 (61%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+R     + + +++S+  +N +SWNA+IAG    G GE  ++ F +M + G +  +FT 
Sbjct: 251 YARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTY 310

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S+  A       ++GK +HA + K G     ++ N L+ MYA  G+I DA KVF  + +
Sbjct: 311 SSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVK 370

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+VSWNS++ G A HG   EA+QLFEQM K +++P+  TFL VL+AC H+G +D+G  Y
Sbjct: 371 QDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYY 430

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM+    +E   A H T +V LLGRAG LNEA  FI  M   P  +V+ ALL +C++H
Sbjct: 431 FELMKKH-KIEAQVAHHVT-VVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMH 488

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++ V +A+++ +L P+D   +VLLSN+  +     DA  +R +M   G++K+P  SW
Sbjct: 489 KNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSW 548

Query: 306 V 306
           V
Sbjct: 549 V 549



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 101/177 (57%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  + Q+++  + T++ +SW  +I+G+   G   +AL  F +M   G   + FT+
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTL 209

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A G       G+Q+HA   K GYD NV V + L+ MYA    + +A  +F+S+  
Sbjct: 210 SSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAA 269

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +++VSWN+L+ G A  G     ++LF QM +   +P   T+  V +AC  +G +++G
Sbjct: 270 KNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQG 326



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 54/95 (56%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K+G+ +HA I    ++ ++ + N ++ MYA CG++ +A  +F  M  +D+VSW  L+ G
Sbjct: 121 LKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISG 180

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            +  G + EA+ LF +M     +P+  T   +L A
Sbjct: 181 YSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA 215


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  240 bits (613), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 183/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C   ++   V++ +   + ++W ++I+G  + G+ +QAL+ +  MRQ+ +  D +T 
Sbjct: 75  YIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTF 134

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A   ++  ++G+Q+HA + K+   S+ FV   LV MYA CG I DA ++F  M+ 
Sbjct: 135 ATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNV 194

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++  WN++L+G A HG + EAV LF+ M+   I+PD  +F+ +LSAC HAG   +  +Y
Sbjct: 195 RNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEY 254

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            + M ND  +E P  EHY+ +V  LGRAG + EA+  I +M      S+ +ALL AC++ 
Sbjct: 255 LHSMPNDYGIE-PEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQ 313

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E   R A R+  L P D A YVLLSN+  A + WDD  D R +M  + ++K PG+SW
Sbjct: 314 GDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSW 373

Query: 306 V 306
           +
Sbjct: 374 I 374



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 118/219 (53%), Gaps = 7/219 (3%)

Query: 36  GFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDS 95
           G+     G++AL+ FS + ++G   D  T+ +   A G +    +GKQ+HA   K G+DS
Sbjct: 4   GYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDS 63

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           ++ V + ++ MY  CG + +A  VF+ +   D V+W S++ GC  +G   +A++++ +M+
Sbjct: 64  DLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMR 123

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214
           ++ + PD  TF  ++ A      +++G Q +  +++ D   +P      T++V +  + G
Sbjct: 124 QSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG---TSLVDMYAKCG 180

Query: 215 FLNEAESFINSMS-RNPGPSVYKALLSACQVHGNREIAV 252
            + +A      M+ RN   +++ A+L     HGN E AV
Sbjct: 181 NIEDAYRLFKKMNVRN--IALWNAMLVGLAQHGNAEEAV 217


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  240 bits (613), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 183/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C   ++   V++ +   + ++W ++I+G  + G+ +QAL+ +  MRQ+ +  D +T 
Sbjct: 437 YIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTF 496

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A   ++  ++G+Q+HA + K+   S+ FV   LV MYA CG I DA ++F  M+ 
Sbjct: 497 ATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNV 556

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++  WN++L+G A HG + EAV LF+ M+   I+PD  +F+ +LSAC HAG   +  +Y
Sbjct: 557 RNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEY 616

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            + M ND  +E P  EHY+ +V  LGRAG + EA+  I +M      S+ +ALL AC++ 
Sbjct: 617 LHSMPNDYGIE-PEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQ 675

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E   R A R+  L P D A YVLLSN+  A + WDD  D R +M  + ++K PG+SW
Sbjct: 676 GDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSW 735

Query: 306 V 306
           +
Sbjct: 736 I 736



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 128/263 (48%), Gaps = 16/263 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D + ++  +R R+ + WN ++ G+  LG  ++A + FSE  ++G+  D F++
Sbjct: 228 YSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSV 287

Query: 66  TSIVGAI--GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
             I+           + GKQ+H +  K G DS+V V N LV MY+  G    A +VF+ M
Sbjct: 288 QLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDM 347

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD-----GTTFLVVLSACCHAGF 178
              DL+SWNS++  CA      E+V LF  +    +KPD       T      AC     
Sbjct: 348 KHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVL 407

Query: 179 IDKGLQ-YFYLMRN--DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVY 235
           +D+G Q + + ++   D+ L        + I+ +  + G +  A    N +S  P    +
Sbjct: 408 LDQGKQIHAHAIKAGFDSDLHVN-----SGILDMYIKCGDMVNAGIVFNYISA-PDDVAW 461

Query: 236 KALLSACQVHGNREIAVRSAKRV 258
            +++S C  +GN + A+R   R+
Sbjct: 462 TSMISGCVDNGNEDQALRIYHRM 484



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 135/254 (53%), Gaps = 12/254 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+   +   + V++ ++  + ISWN++I+        E+++  F ++   G+  D+FT+
Sbjct: 331 YSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTL 390

Query: 66  TSIV-----GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
            SI       A G +    +GKQ+HA   K G+DS++ V + ++ MY  CG + +A  VF
Sbjct: 391 ASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVF 450

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           + +   D V+W S++ GC  +G   +A++++ +M+++ + PD  TF  ++ A      ++
Sbjct: 451 NYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALE 510

Query: 181 KGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS-RNPGPSVYKAL 238
           +G Q +  +++ D   +P      T++V +  + G + +A      M+ RN   +++ A+
Sbjct: 511 QGRQLHANVIKLDCVSDPFVG---TSLVDMYAKCGNIEDAYRLFKKMNVRN--IALWNAM 565

Query: 239 LSACQVHGNREIAV 252
           L     HGN E AV
Sbjct: 566 LVGLAQHGNAEEAV 579



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 5/186 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFC-----NLGSGEQALKCFSEMRQAG 57
           +  YS+C S    + V+ +   R+ ++WNAI+  +      N G+ ++ L  F  +R + 
Sbjct: 119 LTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASL 178

Query: 58  IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
                 T+  ++            + +H    KIG + +VFV   LV +Y+ CG + DA 
Sbjct: 179 GSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDAR 238

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
            +F  M ERD+V WN +L G    G  +EA QLF +  ++ ++PD  +  ++L+ C  AG
Sbjct: 239 LLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAG 298

Query: 178 FIDKGL 183
             D  L
Sbjct: 299 TDDLEL 304



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 5/102 (4%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA- 139
           GK  HA I   G   + F+ N L+ MY+ CG+++ A +VF +  ERDLV+WN++L   A 
Sbjct: 96  GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 155

Query: 140 ----HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
               + G ++E + LF  ++ +       T   VL  C ++G
Sbjct: 156 SVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSG 197


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  239 bits (611), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 127/301 (42%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            Y++C        ++SS+R  N++SWN II G+   G GE AL  F EMR A +     T 
Sbjct: 778  YAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTY 837

Query: 66   TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +S++ A    +      Q+H LI K  ++S+  V N L+  YA CG I DA ++F ++ E
Sbjct: 838  SSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKE 897

Query: 126  RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
             DLVSWN+++ G A HG +  A +LF+ M K  IK +  TF+ +LS C   G + +GL  
Sbjct: 898  CDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSL 957

Query: 186  FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            F  MR D  +E P  EHYT IV LLGRAG LN+A +FI  +   P   V++ALLS+C VH
Sbjct: 958  FDSMRLDHGIE-PSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVH 1016

Query: 246  GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
             N E+   SA++VL++ P D   YVLLSN+  A    D     R  M N G+RK+PG SW
Sbjct: 1017 KNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSW 1076

Query: 306  V 306
            V
Sbjct: 1077 V 1077



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 98/186 (52%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +  D +  +  V   + I W+ +I+ +      EQA + F  M ++ +  + F++
Sbjct: 677 YAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSL 736

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   +     GKQ+H    KIG++S +FV N L+ +YA C  +  + ++FSS+ +
Sbjct: 737 SSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRD 796

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            + VSWN++++G +  G+   A+ +F +M+   +     T+  VL AC     I+   Q 
Sbjct: 797 VNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQV 856

Query: 186 FYLMRN 191
             L+  
Sbjct: 857 HCLIEK 862



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS C    D + V+  +  ++ ++W A+++ +      E  L+ FS+MR A   ++ 
Sbjct: 573 IDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNP 632

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F +TS++ A   +S    GK +HA   K  YD+   V   L+ MYA CG I DA   F  
Sbjct: 633 FALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEM 692

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +   D++ W+ ++   A    + +A +LF +M ++ + P+  +   VL AC +   +D G
Sbjct: 693 VTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLG 752

Query: 183 LQ 184
            Q
Sbjct: 753 KQ 754



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 88/171 (51%), Gaps = 2/171 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
             V+  +  RN +S+  ++ G    G  E+A   F  +R  G +++ F +T+++  +  +
Sbjct: 485 HRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAM 544

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                   +HA   K+G+D N FV + L+  Y++CG ++DA +VF  +  +D V+W +++
Sbjct: 545 DTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMV 604

Query: 136 LGCAHHGYSREAVQLFEQMQ--KTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
              + +      +Q+F +M+   +++ P   T ++  + C  +  + KG+ 
Sbjct: 605 SCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIH 655



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 96/197 (48%), Gaps = 15/197 (7%)

Query: 3    ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---D 59
            I +Y++C    D + ++ +++  + +SWNAII+G+   G    A + F  M +  I   D
Sbjct: 876  IDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKAND 935

Query: 60   IDYFTITSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDA-N 117
            I +  + S+ G+ G++S   +G  +  ++    G + ++     +V +    G +NDA N
Sbjct: 936  ITFVALLSVCGSTGLVS---QGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALN 992

Query: 118  KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL--FEQMQKTEIKP-DGTTFLVVLSACC 174
             +         + W +LL  C  H    + V+L  F   +  EI+P D TT++++ +   
Sbjct: 993  FIGDIPSAPSAMVWRALLSSCIVH----KNVELGRFSAEKVLEIEPQDETTYVLLSNMYS 1048

Query: 175  HAGFIDKGLQYFYLMRN 191
             AG +D+   +   MRN
Sbjct: 1049 AAGSLDQVAFFRKSMRN 1065



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 79  KEGKQMHALIFKIGYDS--NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
           + G+ +H  + + G  +  ++F  N L+ MY   G    A++VF  + ER++VS+ +L+ 
Sbjct: 445 RGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQ 504

Query: 137 GCAHHGYSREAVQLFEQMQ 155
           G A  G   EA  LF++++
Sbjct: 505 GHALRGEFEEASALFQRLR 523


>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  239 bits (611), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 109/289 (37%), Positives = 177/289 (61%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ S+  ++++SWN+I+ G    GS E A+K F  MR A +DID+++ ++++ +   ++ 
Sbjct: 361 IFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLAT 420

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F+ G+Q+H L  K G +SN FV + L+FMY+ CG I DA + F    +   ++WN+L+ G
Sbjct: 421 FQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFG 480

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG    A+ LF  M++ ++K D  TF+ VL+AC H G +++G ++   M +D  + P
Sbjct: 481 YAQHGQCNVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGV-P 539

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           PR EHY   V L GR+G L EA++ I  M   P  +V+K  L AC+  GN E+A + A  
Sbjct: 540 PRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGH 599

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +L++ P +   YVLLSN+      WD+   ++ LM  RG++K PG+SW+
Sbjct: 600 LLEMEPEEHCTYVLLSNMYGNLMRWDEKAKVKRLMKERGVKKVPGWSWI 648



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 129/253 (50%), Gaps = 6/253 (2%)

Query: 3   ILTYSRCDSSLDFQNVY-SSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I +YS+C S  D + ++ SS   R+ ++WN+++A +      + A K   +M++ G + D
Sbjct: 242 ITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPD 301

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMY--AICGAINDANKV 119
            ++ TSI+ A    +    G+ +H L+ K G++ +V + N L+ MY  +  G++ +A  +
Sbjct: 302 LYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCI 361

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F S++ +D VSWNS+L G +  G S +AV+ F  M+   +  D  +F  VL +C      
Sbjct: 362 FESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATF 421

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
             G Q  +++     LE       ++++ +  + G + +A       S+N   + + AL+
Sbjct: 422 QLG-QQIHVLALKYGLESNEFVS-SSLIFMYSKCGIIEDARRSFEEASKNSSIT-WNALM 478

Query: 240 SACQVHGNREIAV 252
                HG   +A+
Sbjct: 479 FGYAQHGQCNVAL 491



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 131/284 (46%), Gaps = 29/284 (10%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C        ++  +  R+ +SWN +IAG  N G+ E +      MR  G ++D +T 
Sbjct: 43  YWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGFELDRYTF 102

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++  I     F  G+Q+H++I K+GY  NV+  + L+ MYA C  + DA   F S+ +
Sbjct: 103 GSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSISK 162

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV-----------LSACC 174
            + VSWN+++ G A  G    A  L + M++   K D  T+  +           L++  
Sbjct: 163 HNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQL 222

Query: 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
           H   I  GL+    M N             A++    + G L++A+   +S +       
Sbjct: 223 HGKIIKHGLELVNTMCN-------------ALITSYSKCGSLDDAKRIFDSSAGIRDLVT 269

Query: 235 YKALLSACQVHGNREIAVRSAKRVLDLWPN--DPAIYVLLSNVS 276
           + +LL+A  +    ++A    K ++D+  +  +P +Y   S +S
Sbjct: 270 WNSLLAAYLLRSQEDLAF---KLLIDMQEHGFEPDLYSYTSIIS 310



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 14/176 (7%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    D +  +      + I+WNA++ G+   G    AL  F  M +  + +D+
Sbjct: 447 IFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEEKKVKMDH 506

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRL------VFMYAICGAINDA 116
            T  +++ A   I   ++G +     F    +S+  V  R+      V +Y   G + +A
Sbjct: 507 ITFVAVLTACSHIGLVEQGCK-----FLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEA 561

Query: 117 NKVFSSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             +   M  + D   W + L  C   G    A Q+   +   E++P+     V+LS
Sbjct: 562 KALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHL--LEMEPEEHCTYVLLS 615



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 3/167 (1%)

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H+L  K+G  ++V+  N ++  Y  C  +  A+ +F  M  RD VSWN+++ G  + G  
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
             +  +   M+    + D  TF  +L     AG    G Q   ++      E   A   +
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAG--S 138

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
           A++ +  +   L +A     S+S++   S + A+++     G+RE A
Sbjct: 139 ALLDMYAKCEKLEDAYLSFLSISKHNTVS-WNAMINGYAQAGDRETA 184


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 184/301 (61%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        V+ S++ R+ I+W+ IIA +  +G GE+A +  S MR  G   + F +
Sbjct: 363 YSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFAL 422

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++   G ++  ++GKQ+HA +  +G +    V + L+ MYA CG+I +A+K+F    +
Sbjct: 423 ASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWK 482

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D++SW +++ G A HG+S+EA++LFE +QK  ++PD  TF+ VL+AC HAG +D G  Y
Sbjct: 483 DDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYY 542

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  + P + EHY  ++ LL RAG L++AE+ I SM       V+  LL AC++H
Sbjct: 543 FNSMSKDYHITPSK-EHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIH 601

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ +   R+A  VL L PN    ++ L+N+  A   W +A +IR LM ++G+ K+PG+S 
Sbjct: 602 GDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSS 661

Query: 306 V 306
           V
Sbjct: 662 V 662



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 97/180 (53%), Gaps = 2/180 (1%)

Query: 6   YSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C   LD+  + +  +RT + +SW  I+  +  +G  +  L+ F  MR + +  + +T
Sbjct: 262 YNKC-GKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYT 320

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            ++++      +  K G+Q+HA +  +G+ + + V N ++ +Y+ CG +   +KVF SM 
Sbjct: 321 FSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMK 380

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD+++W++++   +  GY  EA +   +M+    KP+      VLS C     +++G Q
Sbjct: 381 FRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQ 440



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 91/170 (53%), Gaps = 1/170 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFTITSIVGAI 72
           D ++++  +  R+++SW  II+G+ N     +AL+ FS+MR Q+ + ID F ++  +   
Sbjct: 67  DARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTC 126

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           G+   +  G  +H    K G  ++VFV + L+ MY   G I  + KVF  M  R+ V+W 
Sbjct: 127 GLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWT 186

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +++ G    GYS   +  F  M +++++ D   + + L A   +G ++ G
Sbjct: 187 AVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHG 236



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 78/168 (46%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  + TRN ++W A+I G    G  E  L  FS M ++ ++ D +     + A     
Sbjct: 172 KVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSG 231

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G+ +H    K G+D N FV N L  MY  CG ++     F  M   D+VSW +++ 
Sbjct: 232 ALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVT 291

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
                G     +Q F++M+ + + P+  TF  V+S C +   +  G Q
Sbjct: 292 AYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQ 339



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 16/149 (10%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y++C S  +   ++      + ISW A+I+G+   G  ++A++ F  +++ G+  D 
Sbjct: 461 IIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDS 520

Query: 63  FTITSIVGA---IGVIS-GF----KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN 114
            T   ++ A    G++  GF       K  H    K  Y   + +  R        G ++
Sbjct: 521 VTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCR-------AGRLH 573

Query: 115 DANKVFSSMD-ERDLVSWNSLLLGCAHHG 142
           DA  +  SM  + D V W++LL  C  HG
Sbjct: 574 DAETLIRSMPIQWDDVVWSTLLRACRIHG 602



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLS 171
           + DA  +F  + +RD VSW +++ G  +   S EA++LF +M+ ++E++ D     + L 
Sbjct: 65  LKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLK 124

Query: 172 ACCHAGFIDKGLQYFY 187
            C        GL Y Y
Sbjct: 125 TC------GLGLNYLY 134


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 184/301 (61%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        V+ S++ R+ I+W+ IIA +  +G GE+A +  S MR  G   + F +
Sbjct: 363 YSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFAL 422

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++   G ++  ++GKQ+HA +  +G +    V + L+ MYA CG+I +A+K+F    +
Sbjct: 423 ASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWK 482

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D++SW +++ G A HG+S+EA++LFE +QK  ++PD  TF+ VL+AC HAG +D G  Y
Sbjct: 483 DDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYY 542

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  + P + EHY  ++ LL RAG L++AE+ I SM       V+  LL AC++H
Sbjct: 543 FNSMSKDYHITPSK-EHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIH 601

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ +   R+A  VL L PN    ++ L+N+  A   W +A +IR LM ++G+ K+PG+S 
Sbjct: 602 GDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSS 661

Query: 306 V 306
           V
Sbjct: 662 V 662



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 97/180 (53%), Gaps = 2/180 (1%)

Query: 6   YSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C   LD+  + +  +RT + +SW  I+  +  +G  +  L+ F  MR + +  + +T
Sbjct: 262 YNKC-GKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYT 320

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            ++++      +  K G+Q+HA +  +G+ + + V N ++ +Y+ CG +   +KVF SM 
Sbjct: 321 FSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMK 380

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD+++W++++   +  GY  EA +   +M+    KP+      VLS C     +++G Q
Sbjct: 381 FRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQ 440



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 91/170 (53%), Gaps = 1/170 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFTITSIVGAI 72
           D ++++  +  R+++SW  II+G+ N     +AL+ FS+MR Q+ + ID F ++  +   
Sbjct: 67  DARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTC 126

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           G+   +  G  +H    K G  ++VFV + L+ MY   G I  + KVF  M  R+ V+W 
Sbjct: 127 GLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWT 186

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +++ G    GYS   +  F  M +++++ D   + + L A   +G ++ G
Sbjct: 187 AVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHG 236



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 78/168 (46%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  + TRN ++W A+I G    G  E  L  FS M ++ ++ D +     + A     
Sbjct: 172 KVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSG 231

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G+ +H    K G+D N FV N L  MY  CG ++     F  M   D+VSW +++ 
Sbjct: 232 ALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVT 291

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
                G     +Q F++M+ + + P+  TF  V+S C +   +  G Q
Sbjct: 292 AYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQ 339



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 16/149 (10%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y++C S  +   ++      + ISW A+I+G+   G  ++A++ F  +++ G+  D 
Sbjct: 461 IIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDS 520

Query: 63  FTITSIVGA---IGVIS-GF----KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN 114
            T   ++ A    G++  GF       K  H    K  Y   + +  R        G ++
Sbjct: 521 VTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCR-------AGRLH 573

Query: 115 DANKVFSSMD-ERDLVSWNSLLLGCAHHG 142
           DA  +  SM  + D V W++LL  C  HG
Sbjct: 574 DAETLIRSMPIQWDDVVWSTLLRACRIHG 602



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLS 171
           + DA  +F  + +RD VSW +++ G  +   S EA++LF +M+ ++E++ D     + L 
Sbjct: 65  LKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLK 124

Query: 172 ACCHAGFIDKGLQYFY 187
            C        GL Y Y
Sbjct: 125 TC------GLGLNYLY 134


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 121/301 (40%), Positives = 186/301 (61%), Gaps = 3/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+R     + + +++S+  +N +SWNA+IAG    G GE  ++ F +M + G +  +FT 
Sbjct: 251 YARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTY 310

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A       ++GK +HA + K G     ++ N L+ MYA  G+I DA KVF  + +
Sbjct: 311 SSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVK 369

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+VSWNS++ G A HG   EA+QLFEQM K +++P+  TFL VL+AC H+G +D+G  Y
Sbjct: 370 QDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYY 429

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM+    +E   A H T +V LLGRAG LNEA  FI  M   P  +V+ ALL AC++H
Sbjct: 430 FELMKKH-KIEAQVAHHVT-VVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMH 487

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++ V +A+++ +L P+D   +VLLSN+  +     DA  +R +M   G++K+P  SW
Sbjct: 488 KNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSW 547

Query: 306 V 306
           V
Sbjct: 548 V 548



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 101/177 (57%), Gaps = 1/177 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  + Q+++  + T++ +SW  +I+G+   G   +AL  F +M   G   + FT+
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTL 209

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A G       G+Q+HA   K GYD NV V + L+ MYA    + +A  +F+S+  
Sbjct: 210 SSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAA 269

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +++VSWN+L+ G A  G     ++LF QM +   +P   T+  VL AC  +G +++G
Sbjct: 270 KNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQG 325



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 54/95 (56%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K+G+ +HA I    ++ ++ + N ++ MYA CG++ +A  +F  M  +D+VSW  L+ G
Sbjct: 121 LKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISG 180

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            +  G + EA+ LF +M     +P+  T   +L A
Sbjct: 181 YSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA 215


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 184/301 (61%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S    + V+  +  +N ISW A++ G+   G  E+A+K F EM++ G++ D FT+
Sbjct: 315 YSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTL 374

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   ++  +EG Q H      G  S + V N L+ +Y  CG+  +++++F+ M+ 
Sbjct: 375 GSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNI 434

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSW +LL G A  G + E + LFE+M    +KPDG TF+ VLSAC  AG ++KGLQY
Sbjct: 435 RDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQY 494

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  +  + P   +H T I+ LLGRAG L EA +FIN+M  +P    +  LLS+C+VH
Sbjct: 495 FESMIKEHGIMPI-VDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVH 553

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ EI   +A  ++ L P +PA YVLLS++  +   WD    +R  M ++ +RK+PGYSW
Sbjct: 554 GDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSW 613

Query: 306 V 306
           +
Sbjct: 614 I 614



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 106/178 (59%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           RC    + Q ++  ++ R+ ISW  +I G    G   +AL  F EMR AG  +D FT  S
Sbjct: 216 RCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGS 275

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           ++ A G +    EGKQ+HA + +  +  NVFV + LV MY+ C +I  A  VF  M +++
Sbjct: 276 VLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKN 335

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++SW ++L+G   +G+S EAV++F +MQ+  ++PD  T   V+S+C +   +++G Q+
Sbjct: 336 VISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQF 393



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 126/282 (44%), Gaps = 37/282 (13%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYF 63
            YS+       Q +++ +  R+ +SWN  I+G+ N GS   A++ +  M + A ++++  
Sbjct: 80  VYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRI 139

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI-------------- 109
           T ++++           G+Q++  I K G+ S+VFV + LV MY                
Sbjct: 140 TFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEM 199

Query: 110 -----------------CGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
                            CG I ++ ++F  + ERD +SW  ++ G   +G  REA+ +F 
Sbjct: 200 PERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFR 259

Query: 153 QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLG 211
           +M+      D  TF  VL+AC     + +G Q + Y++R D           +A+V +  
Sbjct: 260 EMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTD---HKDNVFVGSALVDMYS 316

Query: 212 RAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           +   +  AE+    M +    S + A+L     +G  E AV+
Sbjct: 317 KCRSIKSAETVFKRMPQKNVIS-WTAMLVGYGQNGFSEEAVK 357



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 2/142 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S+ +   +++ +  R+++SW A++AG+   G   + +  F  M   G+  D 
Sbjct: 413 ITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDG 472

Query: 63  FTITSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T   ++ A       ++G Q   ++I + G    V     ++ +    G + +A    +
Sbjct: 473 VTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFIN 532

Query: 122 SMD-ERDLVSWNSLLLGCAHHG 142
           +M    D+V W +LL  C  HG
Sbjct: 533 NMPCHPDVVGWATLLSSCRVHG 554



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           + K++H LI K       F+ N L+  Y   G +  A+ VF  + + +L SWN++L   +
Sbjct: 23  QAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYS 82

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR 199
             G   +  Q+F  M       DG ++ + +S   + G     ++ + LM  DA++   R
Sbjct: 83  KLGLLSQMQQIFNLMPFR----DGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNR 138

Query: 200 AEHYTAIV 207
               T ++
Sbjct: 139 ITFSTMLI 146



 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 13/137 (9%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           N+F  N ++ +Y+  G ++   ++F+ M  RD VSWN  + G A++G   +AV++++ M 
Sbjct: 70  NLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLML 129

Query: 156 K-TEIKPDGTTFLVVLSACCHAGFIDKGLQ-----YFYLMRNDASLEPPRAEHYTAIVGL 209
           K   +  +  TF  +L  C     +D G Q       +   +D  +  P  + YT +   
Sbjct: 130 KDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKL--- 186

Query: 210 LGRAGFLNEAESFINSM 226
               G + +A+ + + M
Sbjct: 187 ----GLIYDAKRYFDEM 199


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 182/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S    + V+  +  +N ISW A+I G+   G  E+A++ FSEM++ GID D +T+
Sbjct: 317 YSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTL 376

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   ++  +EG Q H L    G    + V N LV +Y  CG+I DA+++F  M  
Sbjct: 377 GSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSF 436

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VSW +L+ G A  G ++E + LFE+M    +KPDG TF+ VLSAC  AGF++KG  Y
Sbjct: 437 HDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSY 496

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ M+ D  + P   +HYT ++ L  R+G L EAE FI  M  +P    +  LLSAC++ 
Sbjct: 497 FHSMQKDHGIVPID-DHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLR 555

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ EI   +A+ +L++ P +PA YVLL ++  A   W++   +R  M +R ++K+PG SW
Sbjct: 556 GDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSW 615

Query: 306 V 306
           +
Sbjct: 616 I 616



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 137/259 (52%), Gaps = 18/259 (6%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           RC    + + ++  +  R+ I+W  ++ GF   G   +AL+ F  MR  GI ID +T  S
Sbjct: 218 RCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGS 277

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           I+ A G +S  ++GKQ+HA I +  YD NVFV + LV MY+ C +I  A  VF  M  ++
Sbjct: 278 ILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKN 337

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
           ++SW +L++G   +G S EAV++F +MQ+  I PD  T   V+S+C +   +++G Q+  
Sbjct: 338 IISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHC 397

Query: 188 LMRNDASLEPPRAEHY----TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           L      +      HY     A+V L G+ G + +A    + MS +   S + AL+S   
Sbjct: 398 LALVSGLM------HYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS-WTALVSGYA 450

Query: 244 VHGNREIAVRSAKRVLDLW 262
             G        AK  +DL+
Sbjct: 451 QFGR-------AKETIDLF 462



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 36/225 (16%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           L  L ++R  S  D + +++S+  R+ +S+NA+IAGF   GS  QA++ +  + QA   +
Sbjct: 79  LSTLAHARLLS--DMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSV 136

Query: 61  --DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI--------- 109
                T++++V A   +     GKQ H  I ++G+ +N FV + LV MYA          
Sbjct: 137 RPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKR 196

Query: 110 ----------------------CGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
                                 C  + +A ++F  M +RD ++W +++ G   +G   EA
Sbjct: 197 AFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEA 256

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN 191
           +++F +M+   I  D  TF  +L+AC     +++G Q + Y++R 
Sbjct: 257 LEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRT 301



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/142 (20%), Positives = 61/142 (42%), Gaps = 2/142 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C S  D   ++  +   +Q+SW A+++G+   G  ++ +  F +M   G+  D 
Sbjct: 415 VTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDG 474

Query: 63  FTITSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T   ++ A       ++G+   H++    G          ++ +Y+  G + +A +   
Sbjct: 475 VTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIK 534

Query: 122 SMD-ERDLVSWNSLLLGCAHHG 142
            M    D + W +LL  C   G
Sbjct: 535 QMPMHPDAIGWGTLLSACRLRG 556



 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 3/110 (2%)

Query: 79  KEGKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           K G+   A  +F      N+F  N L+   A    ++D   +F+SM +RD+VS+N+++ G
Sbjct: 53  KAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAG 112

Query: 138 CAHHGYSREAVQLFEQMQKTE--IKPDGTTFLVVLSACCHAGFIDKGLQY 185
            +  G   +AV+++  + + +  ++P   T   ++ A    G    G Q+
Sbjct: 113 FSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQF 162



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 84  MHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           +H +I + + +    ++ N L+  Y   G    A +VF +M   +L ++N+LL   AH  
Sbjct: 27  LHCVILRTLPHPPPTYLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHAR 86

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAE 201
              +   LF  M + +I     ++  V++     G   + ++ Y  L++ D+S+ P R  
Sbjct: 87  LLSDMEALFASMTQRDI----VSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRIT 142

Query: 202 HYTAIVG 208
             T ++ 
Sbjct: 143 MSTMVMA 149


>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/289 (37%), Positives = 176/289 (60%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ S+  ++++SWN+I+ G    GS E A+K F  MR A +DID+++ ++++ +   ++ 
Sbjct: 361 IFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLAT 420

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F+ G+Q+H L  K G +SN FV + L+FMY+ CG I DA + F    +   ++WN+L+ G
Sbjct: 421 FQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFG 480

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG    A+ LF  M+  ++K D  TF+ VL+AC H G +++G ++   M +D  + P
Sbjct: 481 YAQHGQCNVALDLFFLMEXKKVKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGV-P 539

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           PR EHY   V L GR+G L EA++ I  M   P  +V+K  L AC+  GN E+A + A  
Sbjct: 540 PRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGH 599

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +L++ P +   YVLLSN+      WD+   ++ LM  RG++K PG+SW+
Sbjct: 600 LLEMEPEEHCTYVLLSNMYGNLMRWDEKAKVKRLMKERGVKKVPGWSWI 648



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 129/253 (50%), Gaps = 6/253 (2%)

Query: 3   ILTYSRCDSSLDFQNVY-SSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I +YS+C S  D + ++ SS   R+ ++WN+++A +      + A K   +M++ G + D
Sbjct: 242 ITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPD 301

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMY--AICGAINDANKV 119
            ++ TSI+ A    +    G+ +H L+ K G++ +V + N L+ MY  +  G++ +A  +
Sbjct: 302 LYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCI 361

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F S++ +D VSWNS+L G +  G S +AV+ F  M+   +  D  +F  VL +C      
Sbjct: 362 FESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATF 421

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
             G Q  +++     LE       ++++ +  + G + +A       S+N   + + AL+
Sbjct: 422 QLG-QQIHVLALKYGLESNEFVS-SSLIFMYSKCGIIEDARRSFEEASKNSSIT-WNALM 478

Query: 240 SACQVHGNREIAV 252
                HG   +A+
Sbjct: 479 FGYAQHGQCNVAL 491



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 131/284 (46%), Gaps = 29/284 (10%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C        ++  +  R+ +SWN +IAG  N G+ E +      MR  G ++D +T 
Sbjct: 43  YWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGFELDRYTF 102

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++  I     F  G+Q+H++I K+GY  NV+  + L+ MYA C  + DA   F S+ +
Sbjct: 103 GSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSISK 162

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV-----------LSACC 174
            + VSWN+++ G A  G    A  L + M++   K D  T+  +           L++  
Sbjct: 163 HNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQL 222

Query: 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
           H   I  GL+    M N             A++    + G L++A+   +S +       
Sbjct: 223 HGKIIKHGLELVNTMCN-------------ALITSYSKCGSLDDAKRIFDSSAGIRDLVT 269

Query: 235 YKALLSACQVHGNREIAVRSAKRVLDLWPN--DPAIYVLLSNVS 276
           + +LL+A  +    ++A    K ++D+  +  +P +Y   S +S
Sbjct: 270 WNSLLAAYLLRSQEDLAF---KLLIDMQEHGFEPDLYSYTSIIS 310



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 3/167 (1%)

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H+L  K+G  ++V+  N ++  Y  C  +  A+ +F  M  RD VSWN+++ G  + G  
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
             +  +   M+    + D  TF  +L     AG    G Q   ++      E   A   +
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAG--S 138

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
           A++ +  +   L +A     S+S++   S + A+++     G+RE A
Sbjct: 139 ALLDMYAKCEKLEDAYLSFLSISKHNTVS-WNAMINGYAQAGDRETA 184



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 14/176 (7%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    D +  +      + I+WNA++ G+   G    AL  F  M    + +D+
Sbjct: 447 IFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEXKKVKMDH 506

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRL------VFMYAICGAINDA 116
            T  +++ A   I   ++G +     F    +S+  V  R+      V +Y   G + +A
Sbjct: 507 ITFVAVLTACSHIGLVEQGCK-----FLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEA 561

Query: 117 NKVFSSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             +   M  + D   W + L  C   G    A Q+   +   E++P+     V+LS
Sbjct: 562 KALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHL--LEMEPEEHCTYVLLS 615


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/290 (37%), Positives = 175/290 (60%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +  +N++SW  +++G+ + G  E ALK F++MR   +    +T    + A G + 
Sbjct: 385 EVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELG 444

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             K GKQ+H  I ++G++ +    N L+ MYA CGA+ +A+ +F  M   D VSWN+++ 
Sbjct: 445 ALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMIS 504

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
               HG+ REA++LF++M    I PD  +FL VL+AC H+G +D+G +YF  M+ D  + 
Sbjct: 505 ALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGII 564

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
           P   +HYT ++ LLGRAG + EA   I +M   P PS+++A+LS C+  G+ E+   +A 
Sbjct: 565 PGE-DHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAAD 623

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++  + P     Y+LLSN   A  CW DA  +R LM +RG++K+PG SW+
Sbjct: 624 QLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWI 673



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 100/182 (54%), Gaps = 10/182 (5%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++V+  V  +  + WNA+I+G+ + G   +A + F  M    + +D FT TS++ A   +
Sbjct: 248 RSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANV 307

Query: 76  SGFKEGKQMHALIFKIG----YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
             F  GK +H  I ++      ++ + V N LV  Y+ CG I  A ++F +M  +D+VSW
Sbjct: 308 GLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSW 367

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
           N++L G        +AV++FE+M  K E+     +++V++S   H GF +  L+ F  MR
Sbjct: 368 NTILSGYVESSCLDKAVEVFEEMPYKNEL-----SWMVMVSGYVHGGFAEDALKLFNKMR 422

Query: 191 ND 192
           ++
Sbjct: 423 SE 424



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 86/212 (40%), Gaps = 38/212 (17%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTIT 66
           R  +++ F +     R R+ +  NA+I+ +        A+  F  +  +G +  D ++ T
Sbjct: 103 RLPAAVSFFDAVPPAR-RDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFT 161

Query: 67  SIVGAIGVISGF--KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICG---AINDANKVFS 121
           +++ A G +     +   Q+H  + K G    + V N LV +Y  C    A  DA KV  
Sbjct: 162 ALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLD 221

Query: 122 SMDERDLVSWNSLLL-------------------------------GCAHHGYSREAVQL 150
            M  +D ++W ++++                               G  H G + EA +L
Sbjct: 222 EMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFEL 281

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           F +M    +  D  TF  VLSAC + G    G
Sbjct: 282 FRRMVLERVPLDEFTFTSVLSACANVGLFAHG 313



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 8/171 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---D 59
           I  Y+RC +  +   ++  +   + +SWNA+I+     G G +AL+ F  M   GI    
Sbjct: 472 ITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDR 531

Query: 60  IDYFTITSIVGAIGVI-SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           I + T+ +     G++  GF+  + M      I  + +     RL+ +    G I +A  
Sbjct: 532 ISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDH---YTRLIDLLGRAGRIGEARD 588

Query: 119 VFSSMDERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
           +  +M      S W ++L GC   G         +Q+ K   + DGT  L+
Sbjct: 589 LIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILL 639


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/291 (38%), Positives = 184/291 (63%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +N++ ++  R+ ISW+A+IAG+   G  E+AL  F EM++    ++  + T  +     I
Sbjct: 134 RNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNI 193

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  + G+Q+H  + K GY +  +V N L+ MY  CG+I++A   F  + E+D+VSWN+++
Sbjct: 194 AALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMI 253

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG+  EA+ +FE M+ T I+PD  T + VL+AC HAG +D+G +YFY M  D  +
Sbjct: 254 HGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGI 313

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
              +  HYT +V LLGRAG L EA++ + +M   P  + + ALL A ++HGN E+  ++A
Sbjct: 314 -TAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAA 372

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + + ++ P++  +Y+LLS +  A+  W DAG +R  M N+G++K PGYSW+
Sbjct: 373 QIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWL 423



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 10/171 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  + ++ +  +  ++ +SWN +I G+   G GE+AL  F  M+  GI  D  T+
Sbjct: 225 YCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATM 284

Query: 66  TSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            S++ A        +G +  +++    G  + +     +V +    G + +A  +  +M 
Sbjct: 285 VSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMP 344

Query: 125 -ERDLVSWNSLLLGCAHHGYS---REAVQLFEQMQKTEIKPDGTTFLVVLS 171
            E D  +W +LL     HG +    +A Q+  +M+     P  +   ++LS
Sbjct: 345 FEPDAATWGALLGASRIHGNTELGEKAAQIIFEME-----PHNSGMYILLS 390



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 84/169 (49%), Gaps = 17/169 (10%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ +SWNA+++G+   G  ++A + F +M           + + +   G+++ 
Sbjct: 48  LFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKM----------PLKNGISWNGLLAA 97

Query: 78  FKEGKQMH--ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           + +  ++     +F+   D  +   N L     + G +     +F +M +RD +SW++++
Sbjct: 98  YVQNGRIEDAKRLFESKMDWTLVSWNCL-----MGGFVRKRRNLFDNMPQRDSISWSAMI 152

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G + +G S EA+  F +MQ+   + + ++F   LS C +   ++ G Q
Sbjct: 153 AGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQ 201



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
           A  +F  M ERDL SWN +L G   +   + A  LFE+M + +I     ++  +LS    
Sbjct: 14  ARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDI----VSWNAMLSGYAQ 69

Query: 176 AGFIDKGLQYFYLM 189
            GF+D+  + FY M
Sbjct: 70  NGFVDEAREIFYKM 83



 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           + ++F  N ++  Y     +  A  +F  M ERD+VSWN++L G A +G+  EA ++F +
Sbjct: 23  ERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYK 82

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
           M       +G ++  +L+A    G I+   + F
Sbjct: 83  MP----LKNGISWNGLLAAYVQNGRIEDAKRLF 111


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/307 (39%), Positives = 187/307 (60%), Gaps = 8/307 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+R  S    + ++S +  RN +SWNA+IAG+   G  E+AL+ F  +++  I   ++T 
Sbjct: 325 YARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTF 384

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYD------SNVFVQNRLVFMYAICGAINDANKV 119
            +++ A   ++    G+Q H  + K G++      S++FV N L+ MY  CG+I D ++V
Sbjct: 385 GNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRV 444

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M ERD VSWN++++G A +GY  EA+Q+F +M     KPD  T + VL AC HAG +
Sbjct: 445 FEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLV 504

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           ++G  YF+ M     +  P  +HYT +V LLGRAG LNEA++ I +M  NP   V+ +LL
Sbjct: 505 EEGRHYFFSMEEHGLI--PLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLL 562

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           +AC+VHGN E+   +A+++L++ P +   YVLLSN+      W D   +R LM  +G+ K
Sbjct: 563 AACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTK 622

Query: 300 KPGYSWV 306
           +PG SW+
Sbjct: 623 QPGCSWI 629



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 117/216 (54%), Gaps = 13/216 (6%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ S+   +Q SWN++++GF      E++L+ F +M +    ++ ++  S + A   +  
Sbjct: 103 LFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMD 162

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G Q+HAL+ K  Y ++V++ + L+ MY+ CG++  A +VFS M ER+LV+WNSL+  
Sbjct: 163 LNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITC 222

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM------RN 191
              +G + EA+++F +M  + ++PD  T   V+SAC     + +GLQ    +      R+
Sbjct: 223 YEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRD 282

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
           D  L         A+V +  +   +NEA    + MS
Sbjct: 283 DLVLG-------NALVDMYAKCSKVNEARRVFDRMS 311



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 32/214 (14%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C S    + V+S +  RN ++WN++I  +   G   +AL+ F  M  +G++ D 
Sbjct: 189 IDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDE 248

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKV-- 119
            T+ S+V A   +   KEG Q+HA + K   +  ++ + N LV MYA C  +N+A +V  
Sbjct: 249 VTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFD 308

Query: 120 -----------------------------FSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
                                        FS M +R++VSWN+L+ G   +G + EA++L
Sbjct: 309 RMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRL 368

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           F  +++  I P   TF  +LSAC +   +  G Q
Sbjct: 369 FRLLKRESIWPTHYTFGNLLSACANLADLLLGRQ 402



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 4/111 (3%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           + +HA I    +   +F+QNRL+ +Y  C  ++DA K+F  M +R+  +WNSL+      
Sbjct: 35  RLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKS 94

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           G+  EA +LF  M     +PD  ++  ++S        ++ L+YF  M  +
Sbjct: 95  GFLDEAARLFGSMP----EPDQCSWNSMVSGFAQHDRFEESLEYFVKMHRE 141


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/301 (38%), Positives = 176/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + V+S + TRN +SWN +IAG+   G   +  +  S M+  G   D  T+
Sbjct: 440 YIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTV 499

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +I+ A G ++G + GK +HA   K+G +S+  V   L+ MY+ CG + +A  VF  M  
Sbjct: 500 ITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSN 559

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD V+WN++L G   HG   EAV LF++M K  + P+  T   V+SAC  AG + +G + 
Sbjct: 560 RDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREI 619

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M+ D  +  PR +HY  +V LLGRAG L EAE FI SM   P  SV+ ALL AC+ H
Sbjct: 620 FRMMQEDFKM-TPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSH 678

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++A R+A  +L+L P+  ++Y+ LSN+      WDD+  +R +M +RG++K  G S 
Sbjct: 679 NNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESS 738

Query: 306 V 306
           +
Sbjct: 739 I 739



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 122/243 (50%), Gaps = 8/243 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C        V+  +  RN +SW AII          +A + + +M QAGI  + 
Sbjct: 199 ITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNA 258

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S++ +         G+++H+ I + G ++++ V N L+ MY  C ++ +A ++F  
Sbjct: 259 VTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDR 318

Query: 123 MDERDLVSWNSLLLGCAHHGYS-----REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           M +RD++SW++++ G A  GY       E  QL E+M++  + P+  TF+ +L AC   G
Sbjct: 319 MSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHG 378

Query: 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
            +++G Q  +   +    E  R+   TAI  +  + G + EAE   + M+ N     + +
Sbjct: 379 ALEQGRQ-IHAELSKVGFELDRSLQ-TAIFNMYAKCGSIYEAEQVFSKMA-NKNVVAWTS 435

Query: 238 LLS 240
            LS
Sbjct: 436 FLS 438



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 147/314 (46%), Gaps = 41/314 (13%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLG-----SGEQALKCFSEMRQAG 57
           I  Y +C+S  + + ++  +  R+ ISW+A+IAG+   G     S ++  +    MR+ G
Sbjct: 300 ITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREG 359

Query: 58  IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI---- 113
           +  +  T  SI+ A       ++G+Q+HA + K+G++ +  +Q  +  MYA CG+I    
Sbjct: 360 VFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAE 419

Query: 114 ---------------------------NDANKVFSSMDERDLVSWNSLLLGCAHHGYSRE 146
                                      + A KVFS M  R++VSWN ++ G A +G   +
Sbjct: 420 QVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVK 479

Query: 147 AVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAI 206
             +L   M+    +PD  T + +L AC     +++G +  +       LE       T++
Sbjct: 480 VFELLSSMKAEGFQPDRVTVITILEACGALAGLERG-KLVHAEAVKLGLESDTVV-ATSL 537

Query: 207 VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPN 264
           +G+  + G + EA +  + MS N     + A+L+    HG+   AV   KR+L   + PN
Sbjct: 538 IGMYSKCGQVAEARTVFDKMS-NRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPN 596

Query: 265 DPAIYVLLSNVSKA 278
           +  +  ++S  S+A
Sbjct: 597 EITLTAVISACSRA 610



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 134/281 (47%), Gaps = 37/281 (13%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+ +     + V+  +  R+ ++W+++IA +       +A   F  M  A I+ +  T 
Sbjct: 101 YSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITF 160

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A    S  ++G+++H ++  +G +++V V   L+ MY+ CG I+ A +VF  M E
Sbjct: 161 LSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTE 220

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----------C 174
           R++VSW +++   A H    EA +L+EQM +  I P+  TF+ +L++C            
Sbjct: 221 RNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRI 280

Query: 175 HAGFIDKGLQYFYLMRNDA--------SLEPPR----------AEHYTAIVGLLGRAGF- 215
           H+   ++GL+   ++ N          S++  R             ++A++    ++G+ 
Sbjct: 281 HSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYK 340

Query: 216 ----LNEAESFINSMSRN---PGPSVYKALLSACQVHGNRE 249
               ++E    +  M R    P    + ++L AC  HG  E
Sbjct: 341 DKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALE 381



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 124/268 (46%), Gaps = 16/268 (5%)

Query: 37  FCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN 96
            C  G   +A++    ++Q G+ ++  T   ++        F++GK +H  + ++G + +
Sbjct: 31  LCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEID 90

Query: 97  VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
           +++ N L+  Y+    +  A +VF  M  RD+V+W+S++   A + +  +A   FE+M  
Sbjct: 91  IYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTD 150

Query: 157 TEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-----MRNDASLEPPRAEHYTAIVGLLG 211
             I+P+  TFL +L AC +   ++KG +   +     M  D ++        TA++ +  
Sbjct: 151 ANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVA-------TALITMYS 203

Query: 212 RAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIY 269
           + G ++ A    + M+     S + A++ A   H     A    +++L   + PN    +
Sbjct: 204 KCGEISVACEVFHKMTERNVVS-WTAIIQANAQHRKLNEAFELYEQMLQAGISPN-AVTF 261

Query: 270 VLLSNVSKATDCWDDAGDIRTLMYNRGI 297
           V L N     +  +    I + +  RG+
Sbjct: 262 VSLLNSCNTPEALNRGRRIHSHISERGL 289


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 179/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFT 64
           Y++    LD   ++  +  +N +SW A+I+G    G+   +   F EMR  GIDI D F 
Sbjct: 181 YAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFI 240

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++SI+GA   ++    GKQ+H L+  +GY+S++FV N LV MYA C  +  A K+F  M 
Sbjct: 241 LSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMV 300

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +RD+VSW S+++G A HG + EA+ L+ +M  T +KP+  TF+ ++ AC H G + KG  
Sbjct: 301 QRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRY 360

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +F  M  D  +  P  +HYT ++ LL R+G L EAE+ I +M   P  + + ALLSAC  
Sbjct: 361 FFNSMIKDYGIN-PSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNH 419

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N  I +R A  +L L P DP+ Y+LLSN+  +   W+    +R LM    ++K+PGYS
Sbjct: 420 HRNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYS 479

Query: 305 WV 306
            +
Sbjct: 480 CI 481



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 1/150 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFT 64
           Y +C    D  N+++ +  R+ ISW +I+            L  F  M +Q G+  D++ 
Sbjct: 48  YGKCGLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYV 107

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
              +V A  ++   K+GKQ+HA         +  V++ LV MYA CG  +    VF S+ 
Sbjct: 108 FACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSIS 167

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
            ++ +SW +++ G A  G   +A+QLF++M
Sbjct: 168 SKNSISWTAMISGYAQSGRKLDAIQLFQKM 197



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 1/105 (0%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK++H  I K G D    + N L+ MY  CG I DA  +F+ +  RD +SW S+L     
Sbjct: 22  GKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQ 81

Query: 141 HGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQ 184
                  + +F  M K + ++PD   F  ++ AC   G + +G Q
Sbjct: 82  ANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQ 126


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 183/304 (60%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C       +V+ +++ +  ++WNA+I G+   G   +AL  F EM+   I  D 
Sbjct: 386 ISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDS 445

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ A+  +S  ++ K +H L  +   D NVFV   L+  +A CGAI  A K+F  
Sbjct: 446 FTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDL 505

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER +++WN+++ G   +G+ REA+ LF +MQ   +KP+  TFL V++AC H+G +++G
Sbjct: 506 MQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEG 565

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           + YF  M+ +  LEP   +HY A+V LLGRAG L++A  FI  M   PG +V  A+L AC
Sbjct: 566 MYYFESMKENYGLEPT-MDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGAC 624

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N E+  ++A  + DL P+D   +VLL+N+  +   WD    +RT M  +GI+K PG
Sbjct: 625 RIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPG 684

Query: 303 YSWV 306
            S V
Sbjct: 685 CSLV 688



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 96/177 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   ++  +  R+ +SWN ++AG+   G   +A++   +M++AG   D  T+
Sbjct: 187 YAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITL 246

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A+  +   + G+ +H   F+ G++  V V   ++  Y  CG++  A  VF  M  
Sbjct: 247 VSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSS 306

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           R++VSWN+++ G A +G S EA   F +M    ++P   + +  L AC + G +++G
Sbjct: 307 RNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERG 363



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 96/170 (56%), Gaps = 4/170 (2%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           TY +C S    + V+  + +RN +SWN +I G+   G  E+A   F +M   G++    +
Sbjct: 287 TYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVS 346

Query: 65  ITSIVGAIGVISGFKEGKQMHALI--FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +   + A   +   + G+ +H L+   KIG+D  V V N L+ MY+ C  ++ A  VF +
Sbjct: 347 MMGALHACANLGDLERGRYVHRLLDEKKIGFD--VSVMNSLISMYSKCKRVDIAASVFGN 404

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           +  + +V+WN+++LG A +G   EA+ LF +MQ  +IKPD  T + V++A
Sbjct: 405 LKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITA 454



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 91/170 (53%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  + + +S  +   V+  V  +  + ++ ++ G+    +   A++ +  MR   +    
Sbjct: 83  ISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVV 142

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +  T ++   G     + G+++H ++   G+ SN+F    +V +YA C  I DA K+F  
Sbjct: 143 YDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFER 202

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           M +RDLVSWN+++ G A +G++R AVQ+  QMQ+   KPD  T + VL A
Sbjct: 203 MPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPA 252



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 49/86 (56%)

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  KE  Q+  LI K G+ +    Q +L+ ++    +I +A +VF  ++ +  V ++++L
Sbjct: 55  TSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTML 114

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKP 161
            G A +   R+AV+ +E+M+  E+ P
Sbjct: 115 KGYAKNSTLRDAVRFYERMRCDEVMP 140


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 181/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        ++ ++  RN +SWN II  +  LG GE+AL  FS M +  +     T 
Sbjct: 293 YAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTY 352

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+ A   ++  + G Q+H L  K  Y  +V V N L+ MYA CG+I DA  +F  +D 
Sbjct: 353 SSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDL 412

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSWN+++ G + HG   EA+++F  M++T+ KPD  TF+ VLSAC + G +D+G QY
Sbjct: 413 RDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQY 472

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+ D  +EP   EHYT +V L+GR+G L++A  FI  +   P   +++ALL AC +H
Sbjct: 473 FTSMKQDYGIEPC-MEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIH 531

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + E+   SA+RVL+L P D A +VLLSN+      W +   +R  M  +G++K+PG SW
Sbjct: 532 NDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSW 591

Query: 306 V 306
           +
Sbjct: 592 I 592



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 94/179 (52%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC  + D    +  +   + I W+ +I+ F   G  E+AL+ F +MR+A +  + FT 
Sbjct: 192 YTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTF 251

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   I      K +H    K G  ++VFV N L+  YA CG I  + ++F ++ +
Sbjct: 252 SSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSD 311

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           R+ VSWN++++     G    A+ LF  M + +++    T+  +L AC     ++ GLQ
Sbjct: 312 RNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQ 370



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 86/157 (54%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  + +++ +SW  +IA +       +AL+ FS+MR AG   + FT   ++ A   +
Sbjct: 101 REVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGL 160

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             F  GK +H  + K  Y+ +++V   L+ +Y  CG  +DA + F  M + D++ W+ ++
Sbjct: 161 QNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMI 220

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
              A  G S +A+++F QM++  + P+  TF  VL A
Sbjct: 221 SRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQA 257



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 85/165 (51%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  RN +S+  +I G+       +A + F+ +   G +++ F  T+++  +  +  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G+ +H  + K+GY SN F+   L+  Y++ G ++ A +VF  +  +D+VSW  ++  
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            A +    EA++ F QM+    KP+  TF  VL AC      D G
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAG 166


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 181/301 (60%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC        V+  + ++N +SWNA+I+GF   G GE AL  F+EM + G +  +FT 
Sbjct: 197 YARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTY 256

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S+  +I  +   ++GK +HA + K       FV N L+ MYA  G++ DA KVF  +D 
Sbjct: 257 SSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDN 316

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +DLV+WNS+L   A +G  +EAV  FE+M+K+ +  +  TFL +L+AC H G + +G +Y
Sbjct: 317 KDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRY 376

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M+ +  LE P  +HY  +V LLGRAG LN A  FI  M   P  +V+ ALL+AC++H
Sbjct: 377 FEMMK-EYDLE-PEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMH 434

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++   +A  V +L P+D    VLL N+  +T  WD A  +R +M   G++K+P  SW
Sbjct: 435 KNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSW 494

Query: 306 V 306
           V
Sbjct: 495 V 495



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 96/180 (53%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S LD +NV+  +R ++ +SW ++IAG+       +A+     M +     + 
Sbjct: 93  IHMYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNG 152

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++ A G  +    G+Q+HAL  K G+  +V+V + L+ MYA CG ++ A  VF  
Sbjct: 153 FTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDK 212

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +D ++ VSWN+L+ G A  G    A+  F +M +   +    T+  V S+    G +++G
Sbjct: 213 LDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQG 272



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 13/198 (6%)

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
           S + A       ++ +++HA +    +  + F+ N L+ MY  C ++ DA  VF  M  +
Sbjct: 56  SFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRK 115

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
           D+VSW SL+ G A +    EA+ L   M K   KP+G TF  +L A     + D G    
Sbjct: 116 DMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAA--GAYADSGTG-- 171

Query: 187 YLMRNDASLEPPRAEHYTAIVG-----LLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
              R   +L      H    VG     +  R G ++ A +  + +    G S + AL+S 
Sbjct: 172 ---RQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVS-WNALISG 227

Query: 242 CQVHGNREIAVRSAKRVL 259
               G+ E A+ +   +L
Sbjct: 228 FARKGDGESALMTFAEML 245


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 181/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D + V++ +  R+ ISW +++  +      ++A++ FS MR  GI  + FT 
Sbjct: 421 YAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTF 480

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ +   +   + G+Q+H +I K+G D +  +++ LV MYA CG + DA KVF+ +  
Sbjct: 481 SSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISN 540

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VSW +++ G A HG   +A+QLF +M +  ++P+  TFL VL AC H G +++GLQY
Sbjct: 541 ADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQY 600

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM+    L  P  EHY  IV LL R G LN+A  FI+ M   P   V++ LL AC+VH
Sbjct: 601 FKLMKKTYGL-VPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVH 659

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+   +A+++L     + A YVLLSN    +  + D   +R LM  +G++K+PG SW
Sbjct: 660 GNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSW 719

Query: 306 V 306
           +
Sbjct: 720 I 720



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 142/273 (52%), Gaps = 16/273 (5%)

Query: 7   SRCDSSLDFQNVYSS--VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           S+C S  + +++++S  +  R    WNA+I+G+   G  E+AL+ F++M Q  I +D++T
Sbjct: 318 SKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYT 377

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSSM 123
             S+  AI  +     GK++HA   K G + N V + N +   YA CG++ D  KVF+ M
Sbjct: 378 YCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRM 437

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           ++RDL+SW SL+   +      +A+++F  M+   I P+  TF  VL +C +   ++ G 
Sbjct: 438 EDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQ 497

Query: 184 QYFYL-----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
           Q   +     +  D  +E       +A+V +  + G L +A+   N +S N     + A+
Sbjct: 498 QVHGIICKVGLDMDKCIE-------SALVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAI 549

Query: 239 LSACQVHGNREIAVRSAKRVLDLWPNDPAIYVL 271
           ++    HG  + A++  +R++ L     A+  L
Sbjct: 550 IAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFL 582



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 8/223 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        ++  +  RN  SW  +IAG    G      + F EM+  GI  D F  
Sbjct: 115 YSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAY 174

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + I+     +   + G  +HA I   G+ S+ FV   L+ MYA    I D+ KVF++M E
Sbjct: 175 SGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE 234

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            ++VSWN+++ G   +    +A  LF +M    + PD  TF+ V  A      ++K  + 
Sbjct: 235 VNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEV 294

Query: 185 --YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINS 225
             Y   +  D++         TA++ +  + G L EA S  NS
Sbjct: 295 SGYALELGVDSNTLVG-----TALIDMNSKCGSLQEARSIFNS 332



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 2/107 (1%)

Query: 78  FKEGKQMHALIFKIGYDSN--VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
            K+ K +H  + K  + ++  + + N +   Y+ C  I+ A ++F  M +R+  SW  L+
Sbjct: 84  LKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLI 143

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            G A +G   +  + F +MQ   I PD   +  +L  C     I+ G
Sbjct: 144 AGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 117/301 (38%), Positives = 180/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S    +  +  +  +N ISW A+I G+   G  E+A++ FSEM++ GID D FT+
Sbjct: 317 YSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTL 376

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   ++  +EG Q H L    G    + V N LV +Y  CG+I DA+++F  M  
Sbjct: 377 GSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLF 436

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VSW +L+ G A  G ++E + LFE+M   ++KPDG TF+ VLSAC  AGF++KG  Y
Sbjct: 437 HDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSY 496

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ M+ D  + P   +HYT ++ L  R+G L EAE FI  M  +P    +  LLSAC++ 
Sbjct: 497 FHSMQKDHGIVPID-DHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLR 555

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ EI   +A+ +L++ P +PA YVLL ++      W+    +R  M +R ++K+PG SW
Sbjct: 556 GDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSW 615

Query: 306 V 306
           +
Sbjct: 616 I 616



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 144/277 (51%), Gaps = 13/277 (4%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           RC    + + ++  +  R+ I+W  ++ GF   G   QAL  F  MR  GI ID +T  S
Sbjct: 218 RCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGS 277

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           I+ A G +S  ++GKQ+HA I +  YD NVFV + LV MY+ C +I  A   F  M  ++
Sbjct: 278 ILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKN 337

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
           ++SW +L++G   +G S EAV++F +MQ+  I PD  T   V+S+C +   +++G Q+  
Sbjct: 338 IISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHC 397

Query: 188 LMRNDASLEPPRAEHY----TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           L      +      HY     A+V L G+ G + +A    + M  +   S + AL++   
Sbjct: 398 LALVSGLM------HYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVS-WTALVTGYA 450

Query: 244 VHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
             G  +  +   +++L  D+ P+      +LS  S+A
Sbjct: 451 QFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRA 487



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 102/192 (53%), Gaps = 8/192 (4%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           L  L ++R    +D  ++++S+  R+ +S+NA+IAGF   G+  +A++ +  + +AG  +
Sbjct: 79  LSTLAHARLLDDMD--SLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSV 136

Query: 61  --DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
                T++++V A   +     G+Q H  I ++G+  N FV + LV MYA  G I DA +
Sbjct: 137 RPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKR 196

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           VF  MD +++V +N+++ G        EA +LFE M       D  T+  +++     G 
Sbjct: 197 VFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDR----DCITWTTMVTGFTQNGL 252

Query: 179 IDKGLQYFYLMR 190
             + L +F  MR
Sbjct: 253 ESQALNFFRRMR 264



 Score = 44.7 bits (104), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 2/142 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C S  D   ++  +   +Q+SW A++ G+   G  ++ +  F +M    +  D 
Sbjct: 415 VTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDG 474

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T   ++ A       ++G    H++    G          ++ +Y+  G + +A +   
Sbjct: 475 VTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIK 534

Query: 122 SMD-ERDLVSWNSLLLGCAHHG 142
            M    D + W +LL  C   G
Sbjct: 535 QMPMHPDAIGWGTLLSACRLRG 556



 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 7/152 (4%)

Query: 79  KEGKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           K G+   A  +F      N+F  N L+   A    ++D + +F+SM +RD VS+N+++ G
Sbjct: 53  KAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAG 112

Query: 138 CAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLSACCHAGFIDKGLQYF-YLMRNDAS 194
            +  G    AV+L+  + +  + ++P   T   ++ A    G    G Q+   ++R    
Sbjct: 113 FSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFG 172

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           +    A   + +VG+  + G + +A+   + M
Sbjct: 173 VN---AFVGSPLVGMYAKMGLIGDAKRVFDEM 201


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 186/301 (61%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    + +NV+  +  RN +SW+ +I G+  LG  E+A++ F E    G+D++ FT+
Sbjct: 200 YAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTL 259

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++   G  +  + GKQ+H L FK  YD + FV + L+ +Y+ CG I  A +VF  +  
Sbjct: 260 SSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPI 319

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++L  WN++L+ CA H +++EA  LF +M+   ++P+  TFL VL AC HAG +++G +Y
Sbjct: 320 KNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKY 379

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM+    +EP   +HY ++V LLGRAG L EA S I  M   P  SV+ A ++ C++H
Sbjct: 380 FALMKK-YEIEPG-TQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIH 437

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN ++A  +A +V +L      ++V+LSN   A   ++DA   R ++ +RG++K+ G SW
Sbjct: 438 GNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVKKETGLSW 497

Query: 306 V 306
           +
Sbjct: 498 I 498



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 7/248 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+    L    V+     ++  +W+++I+ F        A++ F  M    +  D    
Sbjct: 99  YSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIF 158

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S   A  ++     GK +H L+ K GYD +VFV + LV MYA CG I +A  VF  M  
Sbjct: 159 PSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPH 218

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++VSW+ ++ G    G   EA++LF++     +  +  T   V+  C  A  ++ G Q 
Sbjct: 219 RNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQI 278

Query: 186 FYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS-RNPGPSVYKALLSACQ 243
             L  +    L        ++++ L  + G +  A    + +  +N G  ++ A+L AC 
Sbjct: 279 HGLCFKTSYDLSGFVG---SSLISLYSKCGLIEGAYRVFDEVPIKNLG--MWNAMLIACA 333

Query: 244 VHGNREIA 251
            H + + A
Sbjct: 334 QHAHTKEA 341



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 1/141 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C        V+  V  +N   WNA++         ++A   F++M  AG+  ++
Sbjct: 298 ISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNF 357

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   ++ A       +EGK+  AL+ K   +        +V +    G + +A  V   
Sbjct: 358 ITFLCVLYACSHAGLVEEGKKYFALMKKYEIEPGTQHYASMVDLLGRAGKLQEALSVIKG 417

Query: 123 MDERDLVS-WNSLLLGCAHHG 142
           M      S W + + GC  HG
Sbjct: 418 MPTEPTESVWGAFITGCRIHG 438


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 115/305 (37%), Positives = 184/305 (60%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC       N++ S RT+N I+WN++++G+ ++   E+A   F EM  +GI+ +Y
Sbjct: 372 ITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSGIEPNY 431

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            TI SI+     ++  + GK+ H  I +  G+   + + N LV MYA  G + +A ++F 
Sbjct: 432 VTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFD 491

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           S+  RD V++ SL+ G    G  REA++LF++M+K  IKPD  T + VLSAC H+G + +
Sbjct: 492 SISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLSACSHSGLVTE 551

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G++ F LM +   +  PR EH+  +V L GRAG L++A+  I  M   P  +++  LL A
Sbjct: 552 GIKLFELMPSAYGI-IPRLEHFACMVDLFGRAGLLHKAKEMITRMPYRPSSAMWATLLGA 610

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++HGN EI   +A+++L++ P +   YVL++N+  A  CW     +RT M + G+RK P
Sbjct: 611 CRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWSKLAKVRTYMRDLGVRKAP 670

Query: 302 GYSWV 306
           G +WV
Sbjct: 671 GCAWV 675



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 4/229 (1%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N I+WN I  G    G+ E+AL+  S MR  GID+D       +GA   I   K G+++H
Sbjct: 294 NIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIH 353

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
               +  YD    V+N L+ MY+ C  +  A  +F S   +++++WNS+L G  H   S 
Sbjct: 354 GSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSE 413

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF-YLMRNDASLEPPRAEHYT 204
           EA  LF +M  + I+P+  T   +L  C     +  G ++  Y++R     +      + 
Sbjct: 414 EASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLL--WN 471

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           ++V +  R+G + EA+   +S+SR      Y +L++   + G    A++
Sbjct: 472 SLVDMYARSGKVLEAKRLFDSISRRD-EVTYTSLIAGYGIQGEGREALK 519



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 94/186 (50%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+  D   D   +  +    + + WN +I+ +   G   +AL  + +M   GI  D FT 
Sbjct: 138 YTNFDLLADAHTITENSNILHPLPWNLLISSYVRNGLHGEALSAYKQMTHKGIRPDKFTY 197

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A G       GK++HA I       N+FV N LV MYA  G ++ A  +F +M E
Sbjct: 198 PSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLE 257

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSWN+++ G A  G  +EA +LF +M+   I+ +  T+  +   C  +G  ++ L+ 
Sbjct: 258 RDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALEL 317

Query: 186 FYLMRN 191
              MR+
Sbjct: 318 LSHMRS 323



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 5/145 (3%)

Query: 34  IAGFCNLGSGEQALKCFSEMRQ-----AGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
           + GF + G+  +A K FS +++        D+   +++S++ +   +    +GKQ+H LI
Sbjct: 60  LKGFASQGNLLKAFKTFSLIQRHASCSTSDDVVLHSVSSLLLSCVNLKSLSQGKQLHTLI 119

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
             +G++ +  +  +LV  Y     + DA+ +  + +    + WN L+     +G   EA+
Sbjct: 120 ISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVRNGLHGEAL 179

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSAC 173
             ++QM    I+PD  T+  VL AC
Sbjct: 180 SAYKQMTHKGIRPDKFTYPSVLKAC 204


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 184/307 (59%), Gaps = 4/307 (1%)

Query: 3   ILTYSRCDSSLDFQNVYS-SVRTRN--QISWNAIIAGFCNLGSGEQALKCFSEMRQAGID 59
           I  YS C S  D + V+  ++ TR+   +SWN+I+ GF   G  E ALK F  MR   + 
Sbjct: 243 ITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVV 302

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           ID++  ++++ +   ++  + G+Q+H L+ K G++ N FV + L+FMY+ CG I DA K 
Sbjct: 303 IDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKS 362

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F +  +   ++WNSL+ G A HG  + A+ LF  M+   +K D  TF+ VL+AC H G +
Sbjct: 363 FDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLV 422

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           ++G  +   M +D  + PPR EHY  ++ LLGRAG L+EA++ I +M   P   V+K LL
Sbjct: 423 EEGWSFLKSMESDYGI-PPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLL 481

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
            AC+  G+ E+A + A  +L+L P +   YVLLS++      W++   I+ LM  RG++K
Sbjct: 482 GACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKK 541

Query: 300 KPGYSWV 306
            PG+SW+
Sbjct: 542 VPGWSWI 548



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 93/161 (57%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        ++     R+ +SWN +IAGF NLG+ E AL+    M++ G  +D ++ 
Sbjct: 44  YAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSF 103

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+  +  +   + G+Q+H+++ K+GY+ NVF  + L+ MYA C  + DA +VF S++ 
Sbjct: 104 GSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINI 163

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
           R+ V+WN+L+ G A  G    A  L + M+   ++ D  TF
Sbjct: 164 RNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTF 204



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 123/250 (49%), Gaps = 6/250 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+   D   V+ S+  RN ++WNA+I+G+  +G    A      M   G++ID  T 
Sbjct: 145 YAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTF 204

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS-SMD 124
             ++  +      K   Q+HA I K G  S+  V N ++  Y+ CG+I DA +VF  +++
Sbjct: 205 APLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIE 264

Query: 125 ERDL--VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            RDL  VSWNS+L G +  G S +A++ FE M+   +  D   F  VL +C     +  G
Sbjct: 265 TRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLG 324

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            Q   L+        P     ++++ +  + G + +A    ++  ++   + + +L+   
Sbjct: 325 QQVHVLVLKSGF--EPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIA-WNSLIFGY 381

Query: 243 QVHGNREIAV 252
             HG  +IA+
Sbjct: 382 AQHGRGKIAL 391



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 55/105 (52%)

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H L  K G  ++++  N ++  YA CG I  A+K+F    +RD VSWN+++ G  + G  
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
             A++  + M++     DG +F  +L      G+++ G Q   +M
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMM 126


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 180/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        ++  +  R+ +SW+ IIAG+   G   +A +  S MR  G     F +
Sbjct: 363 YAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFAL 422

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A G ++  + GKQ+HA +  IG +    V + L+ MY  CG+I +A+++F + + 
Sbjct: 423 ASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAEN 482

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VSW +++ G A HGYSRE + LFE++ +  ++PD  TF+ VLSAC HAG +D G +Y
Sbjct: 483 DDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRY 542

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M     + P + EHY  ++ LL RAG L++AE  I +M  +    V+  LL AC+VH
Sbjct: 543 FNAMSKKYQISPSK-EHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVH 601

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E   R+A+R+L L PN    ++ L+N+  +   W +A DIR LM ++G+ K+PG+SW
Sbjct: 602 GDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSW 661

Query: 306 V 306
           +
Sbjct: 662 I 662



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 133/264 (50%), Gaps = 12/264 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        ++  +  R+ +SW  II     +G  E A++ F  MR++ +  + +T 
Sbjct: 262 YNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTF 321

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++     ++  + G+Q+HALI  +G  +++ V+N ++ MYA CG +  ++ +F  M  
Sbjct: 322 AAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTR 381

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RD+VSW++++ G +  G+  EA +L   M+    KP       VLSAC +   ++ G Q 
Sbjct: 382 RDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQL 441

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + Y++     LE   A   +A++ +  + G + EA    ++ + N     + A+++    
Sbjct: 442 HAYVL--SIGLEHT-AMVLSALINMYCKCGSIEEASRIFDA-AENDDIVSWTAMINGYAE 497

Query: 245 HGNREIAVRSAKRVLDLWPNDPAI 268
           HG        ++ V+DL+   P +
Sbjct: 498 HG-------YSREVIDLFEKIPRV 514



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 2/223 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     + + V+  +  RN +SW AII G    G  ++AL  FSEM ++ ++ D +T 
Sbjct: 161 YTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTF 220

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              + A         G+++HA   K G+D + FV N L  MY  CG +     +F  M  
Sbjct: 221 AIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSM 280

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSW +++      G    AVQ F +M+++++ P+  TF  V+S C +   I+ G Q 
Sbjct: 281 RDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQL 340

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
             L+ +         E+  +I+ +  + G L  +    + M+R
Sbjct: 341 HALILHLGLAASLSVEN--SIMTMYAKCGQLTSSSVIFHEMTR 381



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 94/168 (55%), Gaps = 1/168 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFTITSIVGAIGV 74
           + ++  +  +++ISW  +I+G+ N     +AL  F  MR ++G+ ID F ++    A G+
Sbjct: 69  RRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGL 128

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
            S    G+ +H    K G  ++VFV + L+ MY   G I +  +VF  M  R++VSW ++
Sbjct: 129 NSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAI 188

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + G    GY++EA+  F +M ++ ++ D  TF + L AC  +G ++ G
Sbjct: 189 ITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYG 236


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 112/289 (38%), Positives = 177/289 (61%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  ++ +N +SW  +I+G    G GE+ LK FS M++ G +   +  +  + +  V+  
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           +  G+Q HA + KIG+DS++   N L+ MYA CG + +A +VF +M   D VSWN+L+  
Sbjct: 433 YCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAA 492

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
              HG+  EAV ++E+M K  I+PD  TFL VL+AC HAG +D+G +YF  M     + P
Sbjct: 493 LGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRI-P 551

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P A+HY  ++ LL R+G  +EAES I S+   P   +++ALLS C+VHGN E+ + +A +
Sbjct: 552 PGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADK 611

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +  L P     Y+LLSN+  AT  W++   +R LM +RG++K+   SW+
Sbjct: 612 LFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWI 660



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 97/170 (57%), Gaps = 6/170 (3%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +++NA+I+G+ N G  ++AL+    M  +GI++D FT  S++ A       + GKQ+HA 
Sbjct: 252 VAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAY 311

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           + +   D +    N LV +Y  CG  N+A  +F  M  +DLVSWN+LL G    G+  EA
Sbjct: 312 VLR-REDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEA 370

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
             +F++M++  I     ++++++S     GF ++GL+ F  M+ +   EP
Sbjct: 371 KLIFKEMKEKNI----LSWMIMISGLAENGFGEEGLKLFSCMKREG-FEP 415



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 114/262 (43%), Gaps = 47/262 (17%)

Query: 20  SSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG-VISGF 78
           + V  R+ + +NA+I GF +   G  A+  F +M+  G   D FT  S++  +  V+   
Sbjct: 106 TPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDE 165

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA----INDANKVFSSMDERD------- 127
           K+  Q HA   K G      V N LV +Y+ C +    ++ A KVF  + E+D       
Sbjct: 166 KQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTM 225

Query: 128 -------------------------LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
                                    LV++N+++ G  + G  +EA+++  +M  + I+ D
Sbjct: 226 MTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELD 285

Query: 163 GTTFLVVLSACCHAGFIDKGLQY--FYLMRNDASLEPPRAEHY-TAIVGLLGRAGFLNEA 219
             T+  V+ AC +A  +  G Q   + L R D S       H+  ++V L  + G  NEA
Sbjct: 286 EFTYPSVIRACANARLLQLGKQVHAYVLRREDFSF------HFDNSLVTLYYKCGKFNEA 339

Query: 220 ESFINSMSRNPGPSVYKALLSA 241
            +    M      S + ALLS 
Sbjct: 340 RAIFEKMPAKDLVS-WNALLSG 360



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 6/170 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C    + Q V+ ++   + +SWNA+IA     G G +A+  + EM + GI  D 
Sbjct: 459 ITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDR 518

Query: 63  FTITSIVGAIGVISGFKEGKQMH---ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            T  +++ A        +G++       +++I   ++ +   RL+ +    G  ++A  +
Sbjct: 519 ITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYA--RLIDLLCRSGKFSEAESI 576

Query: 120 FSSMDERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
             S+  +     W +LL GC  HG     +   +++     + DGT  L+
Sbjct: 577 IESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLL 626


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 180/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+       ++SS+R  N++SWN I+ GF   G GE+AL  F EM+ A +     T 
Sbjct: 390 YAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTY 449

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A    +  +   Q+H  I K  ++++  + N L+  YA CG I DA KVF  + E
Sbjct: 450 SSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLME 509

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD++SWN+++ G A HG + +A++LF++M K+ ++ +  TF+ +LS CC  G ++ GL  
Sbjct: 510 RDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSL 569

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  MR D  ++P   EHYT IV LLGRAG LN+A  FI  +   P   V++ALLS+C +H
Sbjct: 570 FDSMRIDHGIKPS-MEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIH 628

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +   SA+++L++ P D   YVLLSN+  A    D    +R  M N G+RK PG SW
Sbjct: 629 KNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSW 688

Query: 306 V 306
           V
Sbjct: 689 V 689



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 136/277 (49%), Gaps = 19/277 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D +  +  +   + I  + +I+ +      EQA + F  + ++ +  + +++
Sbjct: 289 YAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSL 348

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   +     GKQ+H    KIG++S++FV N L+  YA C  ++ + K+FSS+ +
Sbjct: 349 SSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRD 408

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC------HAGFI 179
            + VSWN++++G +  G   EA+ +F +MQ  ++     T+  VL AC       HAG I
Sbjct: 409 ANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQI 468

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKAL 238
              ++      ND  +         +++    + G++ +A + F + M R+     + A+
Sbjct: 469 HCSIEK-STFNNDTVIG-------NSLIDTYAKCGYIRDALKVFQHLMERD--IISWNAI 518

Query: 239 LSACQVHGNREIAVRSAKRV--LDLWPNDPAIYVLLS 273
           +S   +HG    A+    R+   ++  ND     LLS
Sbjct: 519 ISGYALHGQAADALELFDRMNKSNVESNDITFVALLS 555



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 62/120 (51%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN +S+  ++      G  E A   F  +R  G +++ F +T+++     +
Sbjct: 116 RRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAM 175

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                   +H+  +K+G+D N FV + L+  Y++C  ++DA  VF+ +  +D V W +++
Sbjct: 176 DAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMV 235



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 11/202 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---D 59
           I TY++C    D   V+  +  R+ ISWNAII+G+   G    AL+ F  M ++ +   D
Sbjct: 488 IDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESND 547

Query: 60  IDYFTITSIVGAIGVIS-GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           I +  + S+  + G+++ G      M       G   ++     +V +    G +NDA +
Sbjct: 548 ITFVALLSVCCSTGLVNHGLSLFDSMR---IDHGIKPSMEHYTCIVRLLGRAGRLNDALQ 604

Query: 119 VFSSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFLVVLSACCHA 176
               +      + W +LL  C  H     A+  F   +  EI+P D TT++++ +    A
Sbjct: 605 FIGDIPSAPSAMVWRALLSSCIIH--KNVALGRFSAEKILEIEPQDETTYVLLSNMYAAA 662

Query: 177 GFIDKGLQYFYLMRNDASLEPP 198
           G +D+       MRN    + P
Sbjct: 663 GSLDQVALLRKSMRNIGVRKVP 684



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 79/182 (43%), Gaps = 19/182 (10%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS C    D ++V++ +  ++ + W A+++ +      E A +C             
Sbjct: 204 IDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRCAQSC--------- 254

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
                   ++  IS  ++G  +H    K   D+   V   L+ MYA CG I DA   F  
Sbjct: 255 --------SLLAISCARQG--IHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEM 304

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +   D++  + ++   A    + +A +LF ++ ++ + P+  +   VL AC +   +D G
Sbjct: 305 IPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFG 364

Query: 183 LQ 184
            Q
Sbjct: 365 KQ 366


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 177/302 (58%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFT 64
           Y+R     +   ++     RN  +W A+I+G    G+G  A   F EMR  GI + D   
Sbjct: 182 YARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLV 241

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++S+VGA   ++ ++ GKQMH ++  +GY+S +F+ N L+ MYA C  +  A  +F  M 
Sbjct: 242 LSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMC 301

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +D+VSW S+++G A HG + EA+ L+++M    +KP+  TF+ ++ AC HAG + KG  
Sbjct: 302 RKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRT 361

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M  D  +  P  +HYT ++ L  R+G L+EAE+ I +M  NP    + ALLS+C+ 
Sbjct: 362 LFRTMVEDHGIS-PSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKR 420

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN ++AVR A  +L+L P DP+ Y+LLSN+      W+D   +R LM     +K PGYS
Sbjct: 421 HGNTQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYS 480

Query: 305 WV 306
            +
Sbjct: 481 CI 482



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 6/152 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGS-GEQALKCFSEMRQAGIDIDYFT 64
           Y +C    D   ++ ++  R+ ++W +++   CNL +   +AL     +   G   D+F 
Sbjct: 48  YGKCGLIQDALQLFDALPRRDPVAWASLLTA-CNLSNRPHRALSISRSLLSTGFHPDHFV 106

Query: 65  ITSIVGA---IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             S+V A   +GV+   K+GKQ+HA  F   +  +  V++ L+ MYA  G  +    VF 
Sbjct: 107 FASLVKACANLGVLH-VKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFD 165

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           S+   + +SW +++ G A  G   EA +LF Q
Sbjct: 166 SISSLNSISWTTMISGYARSGRKFEAFRLFRQ 197



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 49/99 (49%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
            K++HA I K G + +  + N L+  Y  CG I DA ++F ++  RD V+W SLL  C  
Sbjct: 22  AKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNL 81

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
                 A+ +   +  T   PD   F  ++ AC + G +
Sbjct: 82  SNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVL 120


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 181/302 (59%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C    +   ++  +  RN+++WN +I G+   G G++AL  +  M +  +     T
Sbjct: 287 VYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVT 346

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +S++ A   ++  + G Q+H+L  K  YD +V V N L+ MYA CG+I +A  VF  + 
Sbjct: 347 YSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLS 406

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ERD +SWN+++ G + HG   EA++ F+ MQ+TE  P+  TF+ +LSAC +AG +D G  
Sbjct: 407 ERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQN 466

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF  M  D  +EP   EHYT +V LLGR+G L++A   I  +   P   V++ALL AC +
Sbjct: 467 YFKSMVQDYGIEPC-MEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVI 525

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H + ++ + SA+++L + P D A +VLLSN+   T  W+    +R  M N+G++K+PG S
Sbjct: 526 HNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLS 585

Query: 305 WV 306
           W+
Sbjct: 586 WI 587



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 137/275 (49%), Gaps = 5/275 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++   + D   V+  +   + I W+ +I+ +       +A++ F +MR+A +  + FT 
Sbjct: 187 YTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTF 246

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   I   + GKQ+H  + K+G D NVFV N L+ +YA CG ++++ K+F  +  
Sbjct: 247 ASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPN 306

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ V+WN++++G    G   +A+ L++ M + +++    T+  VL AC     ++ G Q 
Sbjct: 307 RNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQI 366

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             L  +  ++         A++ +  + G +  A    + +S     S + A++S   +H
Sbjct: 367 HSL--SLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEIS-WNAMISGYSMH 423

Query: 246 GNREIAVRSAKRV--LDLWPNDPAIYVLLSNVSKA 278
           G    A+++ + +   +  PN      +LS  S A
Sbjct: 424 GLVGEALKAFQMMQETECVPNKLTFVSILSACSNA 458



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 91/171 (53%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+ C S    +  + ++  ++ +SW  ++A +      + +L+ F+EMR  G + ++
Sbjct: 83  IDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNH 142

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT   ++ A   +  F  GK +H  + K  Y+ +++V   L+ +Y   G  ND  +VF  
Sbjct: 143 FTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEE 202

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           M + D++ W+ ++   A    SREAV+LF QM++  + P+  TF  VL +C
Sbjct: 203 MPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSC 253



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 85/149 (57%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN +S+  +I G+      ++ +  FS + + G +++ F  T+I+  +  +   +    +
Sbjct: 4   RNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSL 63

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA I+K+G++SN FV   L+  YA+CG++N A + F ++  +D+VSW  ++   A +   
Sbjct: 64  HACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRF 123

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           ++++QLF +M+     P+  TF  VL AC
Sbjct: 124 QDSLQLFAEMRMVGFNPNHFTFAGVLKAC 152


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 112/290 (38%), Positives = 176/290 (60%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           N++ S+++++++SWN+I+ GF  +G  E ALK F  MR +  +ID +  ++++ +   ++
Sbjct: 363 NLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLA 422

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             + G+Q+H L  K G+DSN FV + L+FMY+ CG I DA K F    +   ++WNS++ 
Sbjct: 423 ILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSIMF 482

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
             A HG    A+ LF  M++ E+K D  TF+ VL+AC H G +++G      M +D  + 
Sbjct: 483 AYAQHGQGDVALDLFSIMREREVKLDHVTFVAVLTACSHVGLVEQGRCVLKSMESDYGI- 541

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
           PPR EHY   V L GRAG+L EA++ I+SM   P   V K LL AC+  GN E+A + A 
Sbjct: 542 PPRMEHYACAVDLFGRAGYLEEAKALIDSMPFQPNAMVLKTLLGACRACGNIELAAQVAS 601

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++L++ P +   YV+LSN+      WDD   +  LM  R ++K PG+SW+
Sbjct: 602 QLLEVEPEEHCTYVILSNMYGHLKRWDDKASVTRLMRERKVKKVPGWSWI 651



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 22/213 (10%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+   D  +V+  +  RN +SWNA+I GF  +G  + A      M++ G+ ++  T 
Sbjct: 147 YAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRVEDGTF 206

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS-SMD 124
             ++  +     +K   Q+H  I K G +    + N  +  Y+ CG + DA +VF  ++ 
Sbjct: 207 APLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRVFDGAVG 266

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC----------- 173
            RDLV+WNS+L+    H    +A  LF +MQ    +PD  T+  V+SAC           
Sbjct: 267 TRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGKS 326

Query: 174 CHAGFIDKGLQ----------YFYLMRNDASLE 196
            HA  I +GL+            YL  N+ S+E
Sbjct: 327 FHALVIKRGLEESVTICNALITMYLKLNNKSME 359



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 3/189 (1%)

Query: 3   ILTYSRCDSSLDFQNVYS-SVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           +  YS C    D + V+  +V TR+ ++WN+++  +      E A   F EM+  G + D
Sbjct: 245 LTAYSECGLLEDAKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPD 304

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICG--AINDANKV 119
            +T T ++ A    +    GK  HAL+ K G + +V + N L+ MY      ++  A  +
Sbjct: 305 IYTYTCVISACFAAAHKNYGKSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNL 364

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F SM  +D VSWNS+L G +  G+S +A++LF  M+ +  + D   +  VL +C     +
Sbjct: 365 FHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAIL 424

Query: 180 DKGLQYFYL 188
             G Q   L
Sbjct: 425 QLGQQIHLL 433



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 116/262 (44%), Gaps = 26/262 (9%)

Query: 3   ILTYSRCDS-SLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           +  YS+C S  L+    ++  +  ++ ++WN +I G+   G+   A +    M++ G   
Sbjct: 41  LFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESGNLGAAWEFLKSMKRRGFQA 100

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D +T  SI+  +        G+Q+H+LI KIGY+ +V+  + L+ MYA C  + DA  VF
Sbjct: 101 DGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAGSALLDMYAKCERVEDAYDVF 160

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC------- 173
             M  R+ VSWN+L+ G    G    A  L + MQK  ++ +  TF  +L+         
Sbjct: 161 QGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRVEDGTFAPLLTLLDGDKFYK 220

Query: 174 ----CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
                H   I  GL+++  + N             A +      G L +A+   +     
Sbjct: 221 LTMQLHCKIIKHGLEFYNALCN-------------ATLTAYSECGLLEDAKRVFDGAVGT 267

Query: 230 PGPSVYKALLSACQVHGNREIA 251
                + ++L A  VH   E A
Sbjct: 268 RDLVTWNSMLVAYLVHDKDEDA 289



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 14/176 (7%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    D    +      + I+WN+I+  +   G G+ AL  FS MR+  + +D+
Sbjct: 450 IFMYSKCGIIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIMREREVKLDH 509

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRL------VFMYAICGAINDA 116
            T  +++ A   +   ++G+     + K   +S+  +  R+      V ++   G + +A
Sbjct: 510 VTFVAVLTACSHVGLVEQGR----CVLK-SMESDYGIPPRMEHYACAVDLFGRAGYLEEA 564

Query: 117 NKVFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             +  SM  + + +   +LL  C   G    A Q+  Q+   E++P+     V+LS
Sbjct: 565 KALIDSMPFQPNAMVLKTLLGACRACGNIELAAQVASQL--LEVEPEEHCTYVILS 618


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 122/302 (40%), Positives = 181/302 (59%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C +  +   ++ S+R  N++SWN II G+C  G  E AL  F EMR A +     T
Sbjct: 396 VYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVT 455

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +S++ A    +  K   Q+H+LI K  ++++  V N L+  YA CG I DA KVF S+ 
Sbjct: 456 FSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESII 515

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           + D+VSWN+++ G A HG + +A++LF +M K++ KP+  TF+ +LS C   G +++GL 
Sbjct: 516 QCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLS 575

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M  D  ++P   +HYT IV LLGRAG LN+A  FI  +   P P V++ALLS+C V
Sbjct: 576 LFNSMTMDHRIKPS-MDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVV 634

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N  +   SA++VL++ P D   YVLLSN+  A    D    +R  M N G++K+ G S
Sbjct: 635 HKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLS 694

Query: 305 WV 306
           WV
Sbjct: 695 WV 696



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 137/275 (49%), Gaps = 15/275 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D + V+  +   + I W+ +I+ +      EQA + F  M ++ +  + F++
Sbjct: 296 YAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSL 355

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + ++ A   ++    G+Q+H L+ K+GY+S +FV N L+ +YA C  + ++ ++F S+ +
Sbjct: 356 SGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRD 415

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            + VSWN++++G    G++ +A+ +F++M+   +     TF  VL AC +   I   +Q 
Sbjct: 416 ANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQI 475

Query: 186 FYLMR-----NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
             L+      ND  +         +++    + G + +A     S+ +    S + A++S
Sbjct: 476 HSLIEKSTFNNDTIV-------CNSLIDTYAKCGCIRDALKVFESIIQCDVVS-WNAIIS 527

Query: 241 ACQVHGNREIAVRSAKRV--LDLWPNDPAIYVLLS 273
              +HG    A+    R+   D  PND     LLS
Sbjct: 528 GYALHGRATDALELFNRMNKSDTKPNDVTFVALLS 562



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 94/187 (50%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS C +    + V+  +  ++ ++W A+++ +      E AL  FS+MR AG   + 
Sbjct: 192 IDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNP 251

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F +TS++ A   +S    GK +H    K   D+   V   L+ MYA CG I DA  VF  
Sbjct: 252 FVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEI 311

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +   D++ W+ L+   A    + +A ++F +M ++ + P+  +   VL AC +  F+D G
Sbjct: 312 IPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLG 371

Query: 183 LQYFYLM 189
            Q   L+
Sbjct: 372 QQIHNLV 378



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 89/171 (52%), Gaps = 2/171 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN +S+  ++ G+   G  E+A   F  +++ G ++++F +T+I+  +  +
Sbjct: 104 RRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAM 163

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                   +HA   K+G+D N FV + L+  Y++CGA++ A  VF  +  +D V+W +++
Sbjct: 164 DAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMV 223

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA--CCHAGFIDKGLQ 184
              + +    +A+  F +M+    KP+      VL A  C  +  + KG+ 
Sbjct: 224 SCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIH 274



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 5/99 (5%)

Query: 79  KEGKQMHALIFKIG--YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
           + G+ +HA + + G     + F  N L+ +YA  G +  A ++F  M ER++VS+ +L+ 
Sbjct: 64  RAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQ 123

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDG---TTFLVVLSA 172
           G A  G   EA  LF ++Q+   + +    TT L VL A
Sbjct: 124 GYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVA 162


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 179/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        ++  +  R+ +SW+ IIAG+   G   +A +  S MR  G     F +
Sbjct: 363 YAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFAL 422

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A G ++  + GKQ+HA +  IG +    V + L+ MY  CG+I +A+++F + + 
Sbjct: 423 ASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAEN 482

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VSW +++ G A HGYSRE + LFE++ +  ++PD  TF+ VLSAC HAG +D G  Y
Sbjct: 483 DDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHY 542

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M     + P + EHY  ++ LL RAG L++AE  I +M  +    V+  LL AC+VH
Sbjct: 543 FNAMSKKYQISPSK-EHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVH 601

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E   R+A+R+L L PN    ++ L+N+  +   W +A DIR LM ++G+ K+PG+SW
Sbjct: 602 GDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSW 661

Query: 306 V 306
           +
Sbjct: 662 I 662



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 132/264 (50%), Gaps = 12/264 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        ++  +  R+ +SW  II     +G  E A++ F  MR++ +  + +T 
Sbjct: 262 YNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTF 321

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++     ++  + G+Q+HALI  +G  +++ V+N ++ MYA CG +  ++ +F  M  
Sbjct: 322 AAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTR 381

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RD+VSW++++ G    G+  EA +L   M+    KP       VLSAC +   ++ G Q 
Sbjct: 382 RDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQL 441

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + Y++     LE   A   +A++ +  + G + EA    ++ + N     + A+++    
Sbjct: 442 HAYVL--SIGLEHT-AMVLSALINMYCKCGSIEEASRIFDA-AENDDIVSWTAMINGYAE 497

Query: 245 HGNREIAVRSAKRVLDLWPNDPAI 268
           HG        ++ V+DL+   P +
Sbjct: 498 HG-------YSREVIDLFEKIPRV 514



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 2/223 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     + + V+  +  RN +SW AII G    G  ++AL  FSEM ++ ++ D +T 
Sbjct: 161 YTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTF 220

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              + A         G+++HA   K G+D + FV N L  MY  CG +     +F  M  
Sbjct: 221 AIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSM 280

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSW +++      G    AVQ F +M+++++ P+  TF  V+S C +   I+ G Q 
Sbjct: 281 RDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQL 340

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
             L+ +         E+  +I+ +  + G L  +    + M+R
Sbjct: 341 HALILHLGLAASLSVEN--SIMTMYAKCGQLTSSSVIFHEMTR 381



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 94/168 (55%), Gaps = 1/168 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFTITSIVGAIGV 74
           + ++  +  +++ISW  +I+G+ N     +AL  F  MR ++G+ ID F ++    A G+
Sbjct: 69  RRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGL 128

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
            S    G+ +H    K G  ++VFV + L+ MY   G I +  +VF  M  R++VSW ++
Sbjct: 129 NSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAI 188

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + G    GY++EA+  F +M ++ ++ D  TF + L AC  +G ++ G
Sbjct: 189 ITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYG 236


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 109/290 (37%), Positives = 175/290 (60%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +++S +  RN ++W  +I+G    G GE+ LK F++M+  G++   +     + A  V+ 
Sbjct: 378 SIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLG 437

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G+Q+H+ + ++G+DS +   N L+ MY+ CG +  A  VF +M   D VSWN+++ 
Sbjct: 438 SLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIA 497

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
             A HG+  +A++LFEQM K +I PD  TFL +L+AC HAG I +G  YF  M     + 
Sbjct: 498 ALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGIT 557

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
           P   +HY  ++ LL RAG   +A+S I SM    G  +++ALL+ C++HGN E+ +++A 
Sbjct: 558 PGE-DHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAAD 616

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           R+L+L P     Y++LSN+  A   WD+   +R LM  RG++K+PG SWV
Sbjct: 617 RLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWV 666



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 143/320 (44%), Gaps = 50/320 (15%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y R D  +  + +   +     ++WNA+I+G+   G  E+A   F  M   GI  D 
Sbjct: 224 IAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDE 283

Query: 63  FTITSIVGAIGV----ISGFKEGKQMHALIFKIGYDSN----VFVQNRLVFMYA------ 108
           +T TS++ A G     +  F  G+Q+H  I +   + +    + V N L+  Y       
Sbjct: 284 YTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMI 343

Query: 109 --------------------ICGAIN-----DANKVFSSMDERDLVSWNSLLLGCAHHGY 143
                               + G +N     +AN +FS M ER++++W  ++ G A +G+
Sbjct: 344 EARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGF 403

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMR--NDASLEPPRA 200
             E ++LF QM+   ++P    F   ++AC   G +D G Q +  ++R  +D+ L     
Sbjct: 404 GEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAG-- 461

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL- 259
               A++ +  R G +  AES   +M      S + A+++A   HG+   A+   ++++ 
Sbjct: 462 ---NALITMYSRCGVVESAESVFLTMPYVDSVS-WNAMIAALAQHGHGVKAIELFEQMMK 517

Query: 260 -DLWPNDPAIYVLLSNVSKA 278
            D+ P+      +L+  + A
Sbjct: 518 EDILPDRITFLTILTACNHA 537



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 3/198 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC      ++V+ ++   + +SWNA+IA     G G +A++ F +M +  I  D 
Sbjct: 465 ITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDR 524

Query: 63  FTITSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T  +I+ A       KEG+     +  + G         RL+ +    G    A  V  
Sbjct: 525 ITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIK 584

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           SM  E     W +LL GC  HG     +Q  +++ +     DG T++++ +     G  D
Sbjct: 585 SMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDG-TYIILSNMYAALGQWD 643

Query: 181 KGLQYFYLMRNDASLEPP 198
           +  +   LMR     + P
Sbjct: 644 EVARVRLLMRERGVKKEP 661



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 43/197 (21%)

Query: 20  SSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFK 79
           + +  R+ +S+NA+I  + +   G  AL  F +M++ G   D FT +S++ A+ +I+  +
Sbjct: 97  TPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEE 156

Query: 80  EGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGA---------INDANKVFSSMDE---- 125
              QM H  + K+G      V N L+  Y  C +         +  A KVF    +    
Sbjct: 157 RHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIY 216

Query: 126 --------------------RDL---------VSWNSLLLGCAHHGYSREAVQLFEQMQK 156
                               R+L         V+WN+++ G    G   EA   F +M  
Sbjct: 217 EPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHS 276

Query: 157 TEIKPDGTTFLVVLSAC 173
             I+ D  T+  ++SAC
Sbjct: 277 MGIQEDEYTYTSLISAC 293



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 33/125 (26%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--------------- 125
            + +HA I   G+  N F+ NRL+ +Y     I  A K+F  + +               
Sbjct: 24  ARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSS 83

Query: 126 ------------------RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
                             RD VS+N+++   +H      A+ LF QM++    PD  TF 
Sbjct: 84  SGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFS 143

Query: 168 VVLSA 172
            VLSA
Sbjct: 144 SVLSA 148


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 187/301 (62%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      ++ +S+   ++ ISW A+I G+   G  E+AL+ FS+MR+AG+  D  T 
Sbjct: 382 YSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATF 441

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+ A   ++    G+Q+H+ + + GY S+VF  + LV MYA CG +++A + F  M E
Sbjct: 442 SSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPE 501

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ +SWN+++   AH+G ++ A+++FE M      PD  TFL VL+AC H G  D+ ++Y
Sbjct: 502 RNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKY 561

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+LM++  S+ P + EHY  ++  LGR G  ++ +  +  M     P ++ ++L +C++H
Sbjct: 562 FHLMKHQYSISPWK-EHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIH 620

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN+E+A  +A ++  + P D   YV+LSN+      W+DA  ++ +M +RG+RK+ GYSW
Sbjct: 621 GNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSW 680

Query: 306 V 306
           V
Sbjct: 681 V 681



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 122/249 (48%), Gaps = 5/249 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+CD   D + ++  +  R+ +S+N IIA +         L+ F EM++ G D      
Sbjct: 281 YSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPY 340

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++   G +     GKQ+HA +  +G  S   + N L+ MY+ CG ++ A   FS+  E
Sbjct: 341 ATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSE 400

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +  +SW +L+ G   +G   EA+QLF  M++  ++PD  TF  ++ A      I  G Q 
Sbjct: 401 KSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQL 460

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + YL+R+            + +V +  + G L+EA    + M      S + A++SA   
Sbjct: 461 HSYLIRSGYK---SSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSIS-WNAVISAYAH 516

Query: 245 HGNREIAVR 253
           +G  + A++
Sbjct: 517 YGEAKNAIK 525



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 121/249 (48%), Gaps = 25/249 (10%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  ++ +++NA++ G    G   QAL+ F+ MR+AGI   +FT +SI+     +
Sbjct: 190 RRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGM 249

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +    G Q+HAL+ +     NVFV N L+  Y+ C  ++D  ++F  M ERD VS+N ++
Sbjct: 250 AHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVII 309

Query: 136 LGCAHHGYSREAVQLFEQMQK----TEIKPDGTTFLVV-------LSACCHAGFIDKGLQ 184
              A +  +   ++LF +MQK     ++ P  T   V        +    HA  +  GL 
Sbjct: 310 AAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLA 369

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
              L+ N             A++ +  + G L+ A+S  ++ S     S + AL++    
Sbjct: 370 SEDLLGN-------------ALIDMYSKCGMLDAAKSNFSNRSEKSAIS-WTALITGYVQ 415

Query: 245 HGNREIAVR 253
           +G  E A++
Sbjct: 416 NGQHEEALQ 424



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 5/180 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q+++ S   RN  +W  ++      G    AL  F  M   G+  D  T+T+++   G  
Sbjct: 94  QHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCT 153

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                   +H    K G D++VFV N L+  Y   G +  A +VF  M ++D V++N+++
Sbjct: 154 V-----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMM 208

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           +GC+  G   +A+QLF  M++  I     TF  +L+       +  G Q   L+    S+
Sbjct: 209 MGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSV 268



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 36/76 (47%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           N+F  N ++  Y+  G +  A  +F S   R+  +W  ++   A  G + +A+ LF  M 
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 156 KTEIKPDGTTFLVVLS 171
              + PD  T   VL+
Sbjct: 133 GEGVIPDRVTVTTVLN 148


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 180/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C      + ++  +  +  +SWNAII+GF      E+A K FS+M + G+D D 
Sbjct: 456 IDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDN 515

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  +I+     +   + GKQ+HA I K    S+ ++ + LV MY+ CG + D   +F  
Sbjct: 516 FTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEK 575

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              RD V+WN+++ G A HG   EA+++FE MQ   +KP+  TFL VL AC H G ++KG
Sbjct: 576 APNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKG 635

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L YF+ M ++  L+ P+ EHY+ +V ++GR+G +++A   I  M       +++ LLS C
Sbjct: 636 LHYFHSMLSNYGLD-PQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXC 694

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN E+A ++A  +L L P D A YVLLSN+      W++   +R +M   G++K+PG
Sbjct: 695 KIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPG 754

Query: 303 YSWV 306
            SW+
Sbjct: 755 CSWI 758



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 135/258 (52%), Gaps = 6/258 (2%)

Query: 6   YSRCDSSLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y +C++  D  N +++S+   N  S+NAII G+     G +AL  F  ++++G+ +D  +
Sbjct: 256 YMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVS 315

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++    A  VI G  EG Q+H L  K    SN+ V N ++ MY  CGA+ +A  VF  M 
Sbjct: 316 LSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMV 375

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD VSWN+++     +G   + + LF  M ++ ++PD  T+  VL AC     ++ G++
Sbjct: 376 SRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGME 435

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            +  ++++   L+        A++ +  + G + +AE   + ++     S + A++S   
Sbjct: 436 IHNRIIKSRMGLDSFVG---IALIDMYSKCGMMEKAEKLHDRLAEQTVVS-WNAIISGFS 491

Query: 244 VHGNREIAVRSAKRVLDL 261
           +    E A ++  ++L++
Sbjct: 492 LQKQSEEAQKTFSKMLEM 509



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 4/181 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C + ++   V+  + +R+ +SWNAIIA     G+ E+ L  F  M Q+G++ D FT 
Sbjct: 358 YGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTY 417

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK--IGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            S++ A         G ++H  I K  +G DS  FV   L+ MY+ CG +  A K+   +
Sbjct: 418 GSVLKACAGWQALNCGMEIHNRIIKSRMGLDS--FVGIALIDMYSKCGMMEKAEKLHDRL 475

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            E+ +VSWN+++ G +    S EA + F +M +  + PD  T+  +L  C +   ++ G 
Sbjct: 476 AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGK 535

Query: 184 Q 184
           Q
Sbjct: 536 Q 536



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 51/108 (47%), Gaps = 15/108 (13%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GKQ HA +    +   VFV N L+ MY  C  +  A KVF  M +RD VSWN++L G A 
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 141 HGYSREAVQLFEQMQKTEIKP---------------DGTTFLVVLSAC 173
            G    A +LF+ M  T                   D TTF VVL +C
Sbjct: 121 RGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSC 168



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 25/205 (12%)

Query: 46  ALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105
            L+ F EM++AG           VGA+          Q+H    K  + ++V +    + 
Sbjct: 216 GLELFKEMQKAG-----------VGAL----------QLHGHALKTDFGTDVVIGTATLD 254

Query: 106 MYAICGAIND-ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164
           MY  C  ++D +N++F+S+   +L S+N++++G A      EA+ +F  +QK+ +  D  
Sbjct: 255 MYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEV 314

Query: 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
           +      AC       +GLQ   L     SL         AI+ + G+ G L EA     
Sbjct: 315 SLSGAXRACAVIKGDLEGLQVHGLSMK--SLCQSNICVANAILDMYGKCGALVEACLVFE 372

Query: 225 SMSRNPGPSVYKALLSACQVHGNRE 249
            M      S + A+++A + +GN E
Sbjct: 373 EMVSRDAVS-WNAIIAAHEQNGNEE 396



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 17/129 (13%)

Query: 3   ILTYSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI- 60
           I  Y +C S L F   V+  +  R+ +SWNA++ G+   G    A K F  M   G  + 
Sbjct: 84  IQMYIKC-SDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVV 142

Query: 61  --------------DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFM 106
                         D  T   ++ +   +     G Q+H L  K+G+D +V   + L+ M
Sbjct: 143 ELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDM 202

Query: 107 YAICGAIND 115
           YA C   ND
Sbjct: 203 YAKCCVQND 211


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 179/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + ++  +  +  +SWNAII+GF      E+A K FS+M + G+D D FT 
Sbjct: 475 YSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTY 534

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +I+     +   + GKQ+HA I K    S+ ++ + LV MY+ CG + D   +F     
Sbjct: 535 ATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPN 594

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD V+WN+++ G A HG   EA+++FE MQ   +KP+  TFL VL AC H G ++KGL Y
Sbjct: 595 RDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHY 654

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ M ++  L+ P+ EHY+ +V ++GR+G +++A   I  M       +++ LLS C++H
Sbjct: 655 FHSMLSNYGLD-PQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIH 713

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+A ++A  +L L P D A YVLLSN+      W++   +R +M   G++K+PG SW
Sbjct: 714 GNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSW 773

Query: 306 V 306
           +
Sbjct: 774 I 774



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 115/225 (51%), Gaps = 5/225 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++ ++  R+ +SWN++I+G+ + G   + +  F +M + G   D  T   ++ +   +
Sbjct: 128 QKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSL 187

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G Q+H L  K+G+D +V   + L+ MYA C  ++ + + F SM E++ VSW++++
Sbjct: 188 EDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAII 247

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            GC  +   R  ++LF++MQK  +    +TF  V  +C     +  G Q + + ++ D  
Sbjct: 248 AGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFG 307

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
            +       TA + +  +   L++A+   NS+  N     Y A++
Sbjct: 308 TDVVIG---TATLDMYMKCNNLSDAQKLFNSLP-NHNLQSYNAII 348



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 16/179 (8%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C++  D Q +++S+   N  S+NAII G+                   G+ +D  ++
Sbjct: 320 YMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYAR--------------SDKGLGLDEVSL 365

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +    A  VI G  EG Q+H L  K    SN+ V N ++ MY  CGA+ +A  VF  M  
Sbjct: 366 SGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVS 425

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLF--EQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           RD VSWN+++     +G   + + LF   ++ K+ +  D    + ++      G ++K 
Sbjct: 426 RDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKA 484



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 75/137 (54%), Gaps = 6/137 (4%)

Query: 6   YSRC---DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           Y++C   D S+ F   + S+  +N +SW+AIIAG          L+ F EM++AG+ +  
Sbjct: 219 YAKCKKLDCSIQF---FHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQ 275

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S+  +   +S  + G Q+H    K  + ++V +    + MY  C  ++DA K+F+S
Sbjct: 276 STFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNS 335

Query: 123 MDERDLVSWNSLLLGCA 139
           +   +L S+N++++G A
Sbjct: 336 LPNHNLQSYNAIIVGYA 352



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 33/179 (18%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C + ++   V+  + +R+ +SWNAIIA     G+ E+ L  F   R          I
Sbjct: 407 YGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNR---------II 457

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S                      ++G DS  FV   L+ MY+ CG +  A K+   + E
Sbjct: 458 KS----------------------RLGLDS--FVGIALIDMYSKCGMMEKAEKLHDRLAE 493

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           + +VSWN+++ G +    S EA + F +M +  + PD  T+  +L  C +   ++ G Q
Sbjct: 494 QTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQ 552



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 56/124 (45%), Gaps = 31/124 (25%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAIC------------------------------ 110
           GKQ HA +    +   VFV N L+ MY  C                              
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 111 -GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV 169
            G I  A K+F +M ERD+VSWNSL+ G  H+G  R+ + +F QM +     D TTF VV
Sbjct: 121 RGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVV 180

Query: 170 LSAC 173
           L +C
Sbjct: 181 LKSC 184


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 181/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D + V++ +  R+ ISW +++  +      ++A++ FS MR  GI  + FT 
Sbjct: 421 YAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTF 480

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ +   +   + G+Q+H +I K+G D +  +++ LV MYA CG + DA KVF+ +  
Sbjct: 481 SSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISN 540

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VSW +++ G A HG   +A+QLF +M +  ++P+  TFL VL AC H G +++GLQY
Sbjct: 541 ADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQY 600

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM+    L  P  EHY  IV LL R G LN+A  FI+ M   P   V++ LL AC+VH
Sbjct: 601 FKLMKKTYGL-VPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVH 659

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+   +A+++L     + A YVLLSN    +  + D   +R +M  +G++K+PG SW
Sbjct: 660 GNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCSW 719

Query: 306 V 306
           +
Sbjct: 720 I 720



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 142/273 (52%), Gaps = 16/273 (5%)

Query: 7   SRCDSSLDFQNVYSS--VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           S+C S  + +++++S  +  R    WNA+I+G+   G  E+AL+ F++M Q  I +D++T
Sbjct: 318 SKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYT 377

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSSM 123
             S+  AI  +     GK++HA   K G + N V + N +   YA CG++ D  KVF+ M
Sbjct: 378 YCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRM 437

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           ++RDL+SW SL+   +      +A+++F  M+   I P+  TF  VL +C +   ++ G 
Sbjct: 438 EDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQ 497

Query: 184 QYFYL-----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
           Q   +     +  D  +E       +A+V +  + G L +A+   N +S N     + A+
Sbjct: 498 QVHGIICKVGLDMDKCIE-------SALVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAI 549

Query: 239 LSACQVHGNREIAVRSAKRVLDLWPNDPAIYVL 271
           ++    HG  + A++  +R++ L     A+  L
Sbjct: 550 IAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFL 582



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 8/223 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        ++  +  RN  SW  +IAG    G      + F EM+  GI  D F  
Sbjct: 115 YSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAY 174

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + I+     +   + G  +HA I   G+ S+ FV   L+ MYA    I D+ KVF++M E
Sbjct: 175 SGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE 234

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            ++VSWN+++ G   +    +A  LF +M    + PD  TF+ V  A      ++K  + 
Sbjct: 235 VNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEV 294

Query: 185 --YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINS 225
             Y   +  D++         TA++ +  + G L EA S  NS
Sbjct: 295 SGYALELGVDSNTLVG-----TALIDMNSKCGSLQEARSIFNS 332



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 2/107 (1%)

Query: 78  FKEGKQMHALIFKIGYDSN--VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
            K+ K +H  + K  + ++  + + N +   Y+ C  I+ A ++F  M +R+  SW  L+
Sbjct: 84  LKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLI 143

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            G A +G   +  + F +MQ   I PD   +  +L  C     I+ G
Sbjct: 144 AGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 105/289 (36%), Positives = 180/289 (62%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  ++ +SW A++A +  +G  E+ L+ F EM + G  ++      ++     I+ 
Sbjct: 408 IFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAA 467

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G Q+H+ + K GY    FV N L+ MY  CG++ +A+  F  M+ERD+VSWN+++ G
Sbjct: 468 LECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAG 527

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG+ +EA+++F+ M+KT  KPD  T + VL+AC H+G ++KG+ YFY M  D  +  
Sbjct: 528 YARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGV-A 586

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
            + EHYT ++ LLGRAG L+EA + +  M   P  +++ ALL A ++H N E+   +A++
Sbjct: 587 TKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEK 646

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +L P +  +YVLLSN+  ++  W D   +R +M+ RG++K PG+SW+
Sbjct: 647 IFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWI 695



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 104/243 (42%), Gaps = 21/243 (8%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y R     + + ++ S    + ISWNA++AG+      E+A K F++M Q     D 
Sbjct: 238 LAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQR----DV 293

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            +  ++V          E ++    +F +    +VF    +V  YA  G + +A +VF +
Sbjct: 294 VSWNTMVSGYARRGDMAEARR----LFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDA 349

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M +++ VSWN+++          EA +LF+ M    +     ++  +L+    AG +D+ 
Sbjct: 350 MPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNV----ASWNTMLTGYAQAGMLDEA 405

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNP---GPSVYKALL 239
              F +M    ++       + A++    + GF  E       M R       S +  +L
Sbjct: 406 RAIFGMMPQKDAVS------WAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVL 459

Query: 240 SAC 242
           S C
Sbjct: 460 STC 462



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 8/179 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+R     + + ++     R+  +W AI++G+   G  E+A + F  M     D +  + 
Sbjct: 303 YARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAM----PDKNAVSW 358

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A       +E K+    +F      NV   N ++  YA  G +++A  +F  M +
Sbjct: 359 NAMMAAYVQRRMMEEAKE----LFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQ 414

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +D VSW ++L   +  G+S E +QLF++M +     + + F  VLS C     ++ G+Q
Sbjct: 415 KDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 473



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 123/289 (42%), Gaps = 48/289 (16%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  + R     D + +++++  R+  ++N ++AG+   G   QAL  F  + +     D 
Sbjct: 114 ITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRP----DS 169

Query: 63  FTITSIVGAIGVISGFKEGKQM---------------------HALI------FKIGYDS 95
           F+  +++ A+GV S   + + +                     H L+      F +  + 
Sbjct: 170 FSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEK 229

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           +    N ++  Y   G I +A ++F S  E D +SWN+L+ G        EA ++F +M 
Sbjct: 230 DAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMP 289

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR-AEHYTAIVGLLGRAG 214
           + ++     ++  ++S     G + +  + F        + P R    +TAIV    + G
Sbjct: 290 QRDV----VSWNTMVSGYARRGDMAEARRLF-------DVAPIRDVFTWTAIVSGYAQNG 338

Query: 215 FLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263
            L EA+   ++M      S + A+++A   +  R + +  AK + D  P
Sbjct: 339 MLEEAKRVFDAMPDKNAVS-WNAMMAA---YVQRRM-MEEAKELFDAMP 382



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 4/171 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C S  +  + +  +  R+ +SWN +IAG+   G G++AL+ F  MR+     D 
Sbjct: 494 LAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDD 553

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T+  ++ A       ++G    +++    G  +       ++ +    G +++A  +  
Sbjct: 554 ITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMK 613

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            M  E D   W +LL     H  S       E++   E++P+     V+LS
Sbjct: 614 DMPFEPDSTMWGALLGASRIHRNSELGRNAAEKI--FELEPENAGMYVLLS 662


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 187/301 (62%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      ++ +S+   ++ ISW A+I G+   G  E+AL+ FS+MR+AG+  D  T 
Sbjct: 382 YSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATF 441

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+ A   ++    G+Q+H+ + + GY S+VF  + LV MYA CG +++A + F  M E
Sbjct: 442 SSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPE 501

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ +SWN+++   AH+G ++ A+++FE M      PD  TFL VL+AC H G  D+ ++Y
Sbjct: 502 RNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKY 561

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+LM++  S+ P + EHY  ++  LGR G  ++ +  +  M     P ++ ++L +C++H
Sbjct: 562 FHLMKHQYSISPWK-EHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIH 620

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN+E+A  +A ++  + P D   YV+LSN+      W+DA  ++ +M +RG+RK+ GYSW
Sbjct: 621 GNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSW 680

Query: 306 V 306
           V
Sbjct: 681 V 681



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 122/249 (48%), Gaps = 5/249 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+CD   D + ++  +  R+ +S+N IIA +         L+ F EM++ G D      
Sbjct: 281 YSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPY 340

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++   G +     GKQ+HA +  +G  S   + N L+ MY+ CG ++ A   FS+  E
Sbjct: 341 ATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSE 400

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +  +SW +L+ G   +G   EA+QLF  M++  ++PD  TF  ++ A      I  G Q 
Sbjct: 401 KSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQL 460

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + YL+R+            + +V +  + G L+EA    + M      S + A++SA   
Sbjct: 461 HSYLIRSGYKSSVFSG---SVLVDMYAKCGCLDEALRTFDEMPERNSIS-WNAVISAYAH 516

Query: 245 HGNREIAVR 253
           +G  + A++
Sbjct: 517 YGEAKNAIK 525



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 121/249 (48%), Gaps = 25/249 (10%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  ++ +++NA++ G    G   QAL+ F+ MR+AGI   +FT +SI+     +
Sbjct: 190 RRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGM 249

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +    G Q+HAL+ +     NVFV N L+  Y+ C  ++D  ++F  M ERD VS+N ++
Sbjct: 250 AHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVII 309

Query: 136 LGCAHHGYSREAVQLFEQMQKT----EIKPDGTTFLVV-------LSACCHAGFIDKGLQ 184
              A +  +   ++LF +MQK     ++ P  T   V        +    HA  +  GL 
Sbjct: 310 AAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLA 369

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
              L+ N             A++ +  + G L+ A+S  ++ S     S + AL++    
Sbjct: 370 SEDLLGN-------------ALIDMYSKCGMLDAAKSNFSNRSEKSAIS-WTALITGYVQ 415

Query: 245 HGNREIAVR 253
           +G  E A++
Sbjct: 416 NGQHEEALQ 424



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 5/180 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q+++ S   RN  +W  ++      G    AL  F  M   G+  D  T+T+++   G  
Sbjct: 94  QHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCT 153

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                   +H    K G D++VFV N L+  Y   G +  A +VF  M ++D V++N+++
Sbjct: 154 V-----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMM 208

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           +GC+  G   +A+QLF  M++  I     TF  +L+       +  G Q   L+    S+
Sbjct: 209 MGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSV 268



 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 36/76 (47%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           N+F  N ++  Y+  G +  A  +F S   R+  +W  ++   A  G + +A+ LF  M 
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 156 KTEIKPDGTTFLVVLS 171
              + PD  T   VL+
Sbjct: 133 GEGVIPDRVTVTTVLN 148


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  236 bits (603), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 110/290 (37%), Positives = 177/290 (61%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           N++ S+  ++ +SWN+I+ GF   G  E ALK F  MR   + ID++  ++++ +   ++
Sbjct: 361 NIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLA 420

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             + G+Q+H L+ K G++ N FV + L+FMY+ CG I DA K F +  +   ++WNSL+ 
Sbjct: 421 TLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIF 480

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A HG  + A+ LF  M+   +K D  TF+ VL+AC H G +++G  +   M +D  + 
Sbjct: 481 GYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGI- 539

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
           PPR EHY  ++ LLGRAG L+EA++ I +M   P   V+K LL AC+  G+ E+A + A 
Sbjct: 540 PPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVAS 599

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +L+L P +   YVLLS++      W++   I+ LM  RG++K PG+SW+
Sbjct: 600 HLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWI 649



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 135/284 (47%), Gaps = 25/284 (8%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        ++     R+ +SWN +IAGF NLG+ E AL+    M++ G  +D ++ 
Sbjct: 44  YAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSF 103

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+  +  +   + G+Q+H+++ K+GY+ NVF  + L+ MYA C  + DA +VF S++ 
Sbjct: 104 GSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINI 163

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV-----------LSACC 174
           R+ V+WN+L+ G A  G    A  L + M+   ++ D  TF  +           L+   
Sbjct: 164 RNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQV 223

Query: 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
           HA  +  GL       +D ++         AI+      G + +AE   +          
Sbjct: 224 HAKIVKHGLA------SDTTV-------CNAIITAYSECGSIEDAERVFDGAIETRDLVT 270

Query: 235 YKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
           + ++L+A  V+   E A +     + +   +P IY   S +S A
Sbjct: 271 WNSMLAAYLVNNQEEEAFQLFLE-MQVLGFEPDIYTYTSVISAA 313



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 129/253 (50%), Gaps = 6/253 (2%)

Query: 3   ILTYSRCDSSLDFQNVYS-SVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I  YS C S  D + V+  ++ TR+ ++WN+++A +      E+A + F EM+  G + D
Sbjct: 243 ITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPD 302

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMY--AICGAINDANKV 119
            +T TS++ A    S   +GK +H L+ K G +  V + N L+ MY  +   ++++A  +
Sbjct: 303 IYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNI 362

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F S++ +D VSWNS+L G +  G S +A++ FE M+   +  D   F  VL +C     +
Sbjct: 363 FESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATL 422

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
             G Q   L+        P     ++++ +  + G + +A    ++  ++   + + +L+
Sbjct: 423 QLGQQVHVLVLKSGF--EPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIA-WNSLI 479

Query: 240 SACQVHGNREIAV 252
                HG  +IA+
Sbjct: 480 FGYAQHGRGKIAL 492



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 55/105 (52%)

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H L  K G  ++++  N ++  YA CG I  A+K+F    +RD VSWN+++ G  + G  
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
             A++  + M++     DG +F  +L      G+++ G Q   +M
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMM 126



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 14/177 (7%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    D +  + +    + I+WN++I G+   G G+ AL  F  M+   + +D+
Sbjct: 448 IFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDH 507

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR------LVFMYAICGAINDA 116
            T  +++ A   I   +EG       F    +S+  +  R      ++ +    G +++A
Sbjct: 508 ITFVAVLTACSHIGLVEEGWS-----FLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEA 562

Query: 117 NKVFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
             +  +M  E D + W +LL  C   G    A Q+   +   E++P+     V+LS+
Sbjct: 563 KALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHL--LELEPEEHCTYVLLSS 617


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  236 bits (603), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 116/298 (38%), Positives = 185/298 (62%), Gaps = 11/298 (3%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGF-----CNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           D   V+ +++ R+ I+WN IIA       CNLG     L+  S MR  G+  D  T+ SI
Sbjct: 306 DSLKVFENMKARDIITWNTIIASCVHSEDCNLG-----LRMISRMRTEGVTPDMATMLSI 360

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           +    +++  ++GK++H  IFK+G +S+V V N L+ MY+ CG++ ++ +VF  M  +D+
Sbjct: 361 LPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDV 420

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL 188
           V+W +L+  C  +G  ++AV+ F +M+   I PD   F+ ++ AC H+G +++GL YF+ 
Sbjct: 421 VTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHR 480

Query: 189 MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
           M+ D  +E PR EHY  +V LL R+  L++AE FI SM   P  S++ ALLSAC++ G+ 
Sbjct: 481 MKKDYKIE-PRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDT 539

Query: 249 EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           EIA R ++R+++L P+D   YVL+SN+  A   WD    IR  +  RG++K PG SW+
Sbjct: 540 EIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWM 597



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 6/165 (3%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           + N   WN+II    + G   +AL  +SE ++  +  D +T  S++ A   +  F+  K 
Sbjct: 77  SNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKS 136

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +H  +  +G+ S++++ N L+ MY     ++ A KVF  M  RD+VSWNSL+ G   +GY
Sbjct: 137 IHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 196

Query: 144 SREAVQLFEQMQK------TEIKPDGTTFLVVLSACCHAGFIDKG 182
             EA++++ Q  K       + KPD  T   +L AC H G ++ G
Sbjct: 197 WNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFG 241



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 12/195 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQAL-------KCFSEMRQAGI 58
           Y R +     + V+  +  R+ +SWN++I+G+   G   +AL       K F EM     
Sbjct: 160 YCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQ-F 218

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
             D  TITSI+ A G +   + GK +H  +   GY+ +    N L+ MYA CG +  + +
Sbjct: 219 KPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQE 278

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           VFS M  +D VSWNS++     +G   +++++FE M+  +I     T+  ++++C H+  
Sbjct: 279 VFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDI----ITWNTIIASCVHSED 334

Query: 179 IDKGLQYFYLMRNDA 193
            + GL+    MR + 
Sbjct: 335 CNLGLRMISRMRTEG 349



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 4/171 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C S  +   V+  ++T++ ++W A+I+     G G++A++ F EM  AGI  D+
Sbjct: 396 IEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDH 455

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
               +I+ A       +EG    H +      +  +     +V + +    ++ A     
Sbjct: 456 VAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFIL 515

Query: 122 SMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           SM  + D   W +LL  C   G +  A ++ E++   E+ PD T + V++S
Sbjct: 516 SMPLKPDSSIWGALLSACRMSGDTEIAERVSERI--IELNPDDTGYYVLVS 564


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  236 bits (603), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 121/307 (39%), Positives = 191/307 (62%), Gaps = 2/307 (0%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           + I  Y++       + ++  V  R+ ++WNA+IAG+   GS +QAL+ F EMR  G   
Sbjct: 180 VMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELP 239

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGY-DSNVFVQNRLVFMYAICGAINDANKV 119
           D  T+ S++ A   +     G+++H  I ++G+ D +V + N L+ MYA CG+I  A +V
Sbjct: 240 DEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEV 299

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M E+D+ +WNS+L G A HG++ +++ LF +M+K +I+PD  TF+ VL AC HAG +
Sbjct: 300 FQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRV 359

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           ++G QYF LMR++ ++E P   HY  +V LLGRAG LNEA  FI++M   P   V++ LL
Sbjct: 360 EEGRQYFDLMRDEYNIE-PNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLL 418

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
            AC++HGN E+  R+  ++L +  ++   YVLLSN+  +   WD    +R LM + G+RK
Sbjct: 419 GACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRK 478

Query: 300 KPGYSWV 306
           + G S +
Sbjct: 479 EAGCSLI 485



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 132/296 (44%), Gaps = 22/296 (7%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
             ++  +   +   WN +I G     S   A+  +S+M    +  D FT   ++ A   +
Sbjct: 32  HQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRL 91

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              K G  +H  +F++G++SN FV+N L++ +A CG +  A  +F    +RD+V+W++L 
Sbjct: 92  CWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALT 151

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A  G    A QLF++M   ++     ++ V+++     G ++   + F         
Sbjct: 152 AGYARRGELGVARQLFDEMPVKDL----VSWNVMITGYAKRGEMESARKLFD-------- 199

Query: 196 EPPRAEHYT---AIVGLLGRAGFLNEAESF--INSMSRNPGPSVYKALLSACQVHGNREI 250
           E P+ +  T    I G +         E F  + S+   P      +LLSAC   G+ + 
Sbjct: 200 EVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDA 259

Query: 251 AVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDI-RTLMYNRGIRKKPGYSW 305
             R    + ++   D  + VLL N     D +   G I R L   +G+R+K   +W
Sbjct: 260 GQRIHCCISEMGFRD--LSVLLGNA--LIDMYAKCGSIVRALEVFQGMREKDVSTW 311



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 92  GYDSNVFVQNRLVFM--YAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
           G++SN      L++    AI G +  A+++F  + E D   WN+++ G A       A+ 
Sbjct: 5   GFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAIS 64

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           L+ QM+   ++PD  TF  VL AC    ++  G 
Sbjct: 65  LYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGF 98


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  236 bits (603), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 121/307 (39%), Positives = 191/307 (62%), Gaps = 2/307 (0%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           + I  Y++       + ++  V  R+ ++WNA+IAG+   GS +QAL+ F EMR  G   
Sbjct: 215 VMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELP 274

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGY-DSNVFVQNRLVFMYAICGAINDANKV 119
           D  T+ S++ A   +     G+++H  I ++G+ D +V + N L+ MYA CG+I  A +V
Sbjct: 275 DEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEV 334

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M E+D+ +WNS+L G A HG++ +++ LF +M+K +I+PD  TF+ VL AC HAG +
Sbjct: 335 FQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRV 394

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           ++G QYF LMR++ ++E P   HY  +V LLGRAG LNEA  FI++M   P   V++ LL
Sbjct: 395 EEGRQYFDLMRDEYNIE-PNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLL 453

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
            AC++HGN E+  R+  ++L +  ++   YVLLSN+  +   WD    +R LM + G+RK
Sbjct: 454 GACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRK 513

Query: 300 KPGYSWV 306
           + G S +
Sbjct: 514 EAGCSLI 520



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 132/296 (44%), Gaps = 22/296 (7%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
             ++  +   +   WN +I G     S   A+  +S+M    +  D FT   ++ A   +
Sbjct: 67  HQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRL 126

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              K G  +H  +F++G++SN FV+N L++ +A CG +  A  +F    +RD+V+W++L 
Sbjct: 127 CWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALT 186

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A  G    A QLF++M   ++     ++ V+++     G ++   + F         
Sbjct: 187 AGYARRGELGVARQLFDEMPVKDL----VSWNVMITGYAKRGEMESARKLFD-------- 234

Query: 196 EPPRAEHYT---AIVGLLGRAGFLNEAESF--INSMSRNPGPSVYKALLSACQVHGNREI 250
           E P+ +  T    I G +         E F  + S+   P      +LLSAC   G+ + 
Sbjct: 235 EVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDA 294

Query: 251 AVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDI-RTLMYNRGIRKKPGYSW 305
             R    + ++   D  + VLL N     D +   G I R L   +G+R+K   +W
Sbjct: 295 GQRIHCCISEMGFRD--LSVLLGNA--LIDMYAKCGSIVRALEVFQGMREKDVSTW 346



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 2/104 (1%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFM--YAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           KQ+HA +   G++SN      L++    AI G +  A+++F  + E D   WN+++ G A
Sbjct: 30  KQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSA 89

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
                  A+ L+ QM+   ++PD  TF  VL AC    ++  G 
Sbjct: 90  QSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGF 133


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 182/301 (60%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC+       V+  + ++N++SWNA+IAGF     GE  L  F+EM++ G    +FT 
Sbjct: 206 YARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTY 265

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S+  A   I   ++G+ +HA + K G     FV N ++ MYA  G++ DA KVF  MD+
Sbjct: 266 SSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDK 325

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDLV+WN++L   A +G  +EAV  FE+++K  I+ +  TFL VL+AC H G + +G  Y
Sbjct: 326 RDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHY 385

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M+ D +++ P  +HY + V LLGRAG L EA  F+  M   P  +V+ ALL AC++H
Sbjct: 386 FDMMK-DYNVQ-PEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMH 443

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++   +A  V +L P+D    VLL N+  +T  W+DA  +R +M   G++K+P  SW
Sbjct: 444 KNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSW 503

Query: 306 V 306
           V
Sbjct: 504 V 504



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 114/227 (50%), Gaps = 4/227 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C +  D ++V+  + +R+ +SW  +IAG+       +A+    +M +A    + 
Sbjct: 102 IHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNG 161

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT TS++ A G   G   G+QMHAL  K  +D +V+V + L+ MYA C  ++ A  VF  
Sbjct: 162 FTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDR 221

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  ++ VSWN+L+ G A        +  F +MQ+        T+  + SA    G +++G
Sbjct: 222 LVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQG 281

Query: 183 -LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
              + +L+++   L    A     ++G+  ++G + +A    + M +
Sbjct: 282 RWVHAHLIKSGQKLT---AFVGNTMLGMYAKSGSMVDARKVFDRMDK 325



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 57/118 (48%)

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
           SI+ A          + +HA + +     + F+ N L+ MY  CGA++DA  VF  M  R
Sbjct: 65  SIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSR 124

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           D+VSW  L+ G A +    EA+ L   M +   +P+G TF  +L A    G    G Q
Sbjct: 125 DVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQ 182


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 180/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C      + ++  +  +  +SWNAII+GF      E+A K FS+M + G+D D 
Sbjct: 519 IDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDN 578

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  +I+     +   + GKQ+HA I K    S+ ++ + LV MY+ CG + D   +F  
Sbjct: 579 FTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEK 638

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              RD V+WN+++ G A HG   EA+++FE MQ   +KP+  TFL VL AC H G ++KG
Sbjct: 639 APNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKG 698

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L YF+ M ++  L+ P+ EHY+ +V ++GR+G +++A   I  M       +++ LLS C
Sbjct: 699 LHYFHSMLSNYGLD-PQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSIC 757

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN E+A ++A  +L L P D A YVLLSN+      W++   +R +M   G++K+PG
Sbjct: 758 KIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPG 817

Query: 303 YSWV 306
            SW+
Sbjct: 818 CSWI 821



 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 135/257 (52%), Gaps = 5/257 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C++  D Q +++S+   N  S+NAII G+     G +AL  F  ++++G+ +D  ++
Sbjct: 320 YMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSL 379

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +    A  VI G  EG Q+H L  K    SN+ V N ++ MY  CGA+ +A  VF  M  
Sbjct: 380 SGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVS 439

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RD VSWN+++     +G   + + LF  M ++ ++PD  T+  VL AC     ++ G++ 
Sbjct: 440 RDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEI 499

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +  ++++   L+        A++ +  + G + +AE   + ++     S + A++S   +
Sbjct: 500 HNRIIKSRLGLDSFVG---IALIDMYSKCGMMEKAEKLHDRLAEQTVVS-WNAIISGFSL 555

Query: 245 HGNREIAVRSAKRVLDL 261
               E A ++  ++L++
Sbjct: 556 QKQSEEAQKTFSKMLEM 572



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 4/181 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C + ++   V+  + +R+ +SWNAIIA     G+ E+ L  F  M Q+G++ D FT 
Sbjct: 421 YGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTY 480

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK--IGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            S++ A         G ++H  I K  +G DS  FV   L+ MY+ CG +  A K+   +
Sbjct: 481 GSVLKACAGWQALNCGMEIHNRIIKSRLGLDS--FVGIALIDMYSKCGMMEKAEKLHDRL 538

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            E+ +VSWN+++ G +    S EA + F +M +  + PD  T+  +L  C +   ++ G 
Sbjct: 539 AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGK 598

Query: 184 Q 184
           Q
Sbjct: 599 Q 599



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 115/225 (51%), Gaps = 5/225 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++ ++  R+ +SWN++I+G+ + G   + +  F +M + G   D  T   ++ +   +
Sbjct: 128 QKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSL 187

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G Q+H L  K+G+D +V   + L+ MYA C  ++ + + F SM E++ VSW++++
Sbjct: 188 EDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAII 247

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            GC  +   R  ++LF++MQK  +    +TF  V  +C     +  G Q + + ++ D  
Sbjct: 248 AGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFG 307

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
            +       TA + +  +   L++A+   NS+  N     Y A++
Sbjct: 308 TDVVIG---TATLDMYMKCNNLSDAQKLFNSLP-NHNLQSYNAII 348



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 9/247 (3%)

Query: 6   YSRC---DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           Y++C   D S+ F   + S+  +N +SW+AIIAG          L+ F EM++AG+ +  
Sbjct: 219 YAKCKKLDCSIQF---FHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQ 275

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S+  +   +S  + G Q+H    K  + ++V +    + MY  C  ++DA K+F+S
Sbjct: 276 STFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNS 335

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +   +L S+N++++G A      EA+ +F  +QK+ +  D  +      AC       +G
Sbjct: 336 LPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEG 395

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           LQ   L     SL         AI+ + G+ G L EA      M      S + A+++A 
Sbjct: 396 LQVHGLSMK--SLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVS-WNAIIAAH 452

Query: 243 QVHGNRE 249
           + +GN E
Sbjct: 453 EQNGNEE 459



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 56/124 (45%), Gaps = 31/124 (25%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAIC------------------------------ 110
           GKQ HA +    +   VFV N L+ MY  C                              
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 111 -GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV 169
            G I  A K+F +M ERD+VSWNSL+ G  H+G  R+ + +F QM +     D TTF VV
Sbjct: 121 RGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVV 180

Query: 170 LSAC 173
           L +C
Sbjct: 181 LKSC 184


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 188/304 (61%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C      ++ +S+   ++ ISW A+I G+   G  E+AL+ FS+MR+AG+  D 
Sbjct: 577 IDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDR 636

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T +SI+ A   ++    G+Q+H+ + + GY S+VF  + LV MYA CG +++A + F  
Sbjct: 637 ATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDE 696

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER+ +SWN+++   AH+G ++ A+++FE M      PD  TFL VL+AC H G  D+ 
Sbjct: 697 MPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADEC 756

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           ++YF+LM++  S+ P + EHY  ++  LGR G  ++ +  +  M     P ++ ++L +C
Sbjct: 757 MKYFHLMKHQYSISPWK-EHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSC 815

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN+E+A  +A ++  + P D   YV+LSN+      W+DA  ++ +M +RG+RK+ G
Sbjct: 816 RIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESG 875

Query: 303 YSWV 306
           YSWV
Sbjct: 876 YSWV 879



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 122/249 (48%), Gaps = 5/249 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+CD   D + ++  +  R+ +S+N IIA +         L+ F EM++ G D      
Sbjct: 479 YSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPY 538

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++   G +     GKQ+HA +  +G  S   + N L+ MY+ CG ++ A   FS+  E
Sbjct: 539 ATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSE 598

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +  +SW +L+ G   +G   EA+QLF  M++  ++PD  TF  ++ A      I  G Q 
Sbjct: 599 KSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQL 658

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + YL+R+            + +V +  + G L+EA    + M      S + A++SA   
Sbjct: 659 HSYLIRSGYK---SSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSIS-WNAVISAYAH 714

Query: 245 HGNREIAVR 253
           +G  + A++
Sbjct: 715 YGEAKNAIK 723



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 5/141 (3%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q+++ S   RN  +W  ++      G    AL  F  M   G+  D  T+T+++   G  
Sbjct: 308 QHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCT 367

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                   +H    K G D++VFV N L+  Y   G +  A +VF  M ++D V++N+++
Sbjct: 368 V-----PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMM 422

Query: 136 LGCAHHGYSREAVQLFEQMQK 156
           +GC+  G   +A+QLF  M++
Sbjct: 423 MGCSKEGLHTQALQLFAAMRR 443



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 41/249 (16%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  ++ +++NA++ G    G   QAL+ F+ MR+AG       +          
Sbjct: 404 RRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQ-------- 455

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             +   +     +       NVFV N L+  Y+ C  ++D  ++F  M ERD VS+N ++
Sbjct: 456 --YSHSRSRSTSVL------NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVII 507

Query: 136 LGCAHHGYSREAVQLFEQMQK----TEIKPDGTTFLVV-------LSACCHAGFIDKGLQ 184
              A +  +   ++LF +MQK     ++ P  T   V        +    HA  +  GL 
Sbjct: 508 AAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLA 567

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
              L+ N             A++ +  + G L+ A+S  ++ S     S + AL++    
Sbjct: 568 SEDLLGN-------------ALIDMYSKCGMLDAAKSNFSNRSEKSAIS-WTALITGYVQ 613

Query: 245 HGNREIAVR 253
           +G  E A++
Sbjct: 614 NGQHEEALQ 622



 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 36/76 (47%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           N+F  N ++  Y+  G +  A  +F S   R+  +W  ++   A  G + +A+ LF  M 
Sbjct: 287 NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 346

Query: 156 KTEIKPDGTTFLVVLS 171
              + PD  T   VL+
Sbjct: 347 GEGVIPDRVTVTTVLN 362


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 186/301 (61%), Gaps = 3/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQ--ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           Y +CDS  D   V+  +  R+    SW AI++G+  +G    AL+ F  M+  GI+ D  
Sbjct: 207 YVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEI 266

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           ++ S++     +   + GK +H    K G+  N+ V N L+ MYA CG+I+   ++F  M
Sbjct: 267 SLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQM 326

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            ERD++SW+++++G A+HG +REA++LF++MQK +I+P   TF+ +L+AC HAG +++GL
Sbjct: 327 KERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGL 386

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           +YF  M+ D ++EP   EHY  +V LLG +G L++A   +  M R P   ++ +LLS+C+
Sbjct: 387 RYFESMKRDYNIEPG-VEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCR 445

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
            HGN +IAV + + +L+L P D   YVLLSN+      WD    +R LM ++ ++K PG 
Sbjct: 446 SHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGC 505

Query: 304 S 304
           S
Sbjct: 506 S 506


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 107/290 (36%), Positives = 178/290 (61%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +++  +  R+ ++W  +I+G    G GE+ LK F++M+  G++   +     + +  V+ 
Sbjct: 365 SIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLG 424

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G+Q+H+ I ++G+DS++ V N L+ MY+ CG +  A+ VF +M   D VSWN+++ 
Sbjct: 425 SLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIA 484

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
             A HG+  +A+QL+E+M K +I PD  TFL +LSAC HAG + +G  YF  MR    + 
Sbjct: 485 ALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGIT 544

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
            P  +HY+ ++ LL RAG  +EA++   SM   PG  +++ALL+ C +HGN E+ +++A 
Sbjct: 545 -PEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAAD 603

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           R+L+L P     Y+ LSN+  A   WD+   +R LM  RG++K+PG SW+
Sbjct: 604 RLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWI 653



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 142/316 (44%), Gaps = 46/316 (14%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y R D  +  + +   +     ++WNA+I+G+ + G  E+A      M   GI +D 
Sbjct: 215 IAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDE 274

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN----VFVQNRLVFMYAICGAINDANK 118
           +T TS++ A      F  G+Q+HA + +     +    + V N L+ +Y  CG + +A +
Sbjct: 275 YTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARR 334

Query: 119 VFSSMDERDLVSWNSLLLGC-------------------------------AHHGYSREA 147
           VF  M  +DLVSWN++L GC                               A +G+  E 
Sbjct: 335 VFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEG 394

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY---FYLMRNDASLEPPRAEHYT 204
           ++LF QM+   ++P    +   +++C   G +D G Q       + +D+SL         
Sbjct: 395 LKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVG-----N 449

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL--DLW 262
           A++ +  R G +  A++   +M      S + A+++A   HG+   A++  +++L  D+ 
Sbjct: 450 ALITMYSRCGLVEAADTVFLTMPYVDSVS-WNAMIAALAQHGHGVQAIQLYEKMLKEDIL 508

Query: 263 PNDPAIYVLLSNVSKA 278
           P+      +LS  S A
Sbjct: 509 PDRITFLTILSACSHA 524



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 120/272 (44%), Gaps = 54/272 (19%)

Query: 20  SSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFK 79
           + +  R+ +S+NA+I  F +   G  AL+ F +M++ G   D FT +S++GA+ +I+  +
Sbjct: 88  TPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEE 147

Query: 80  EG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAI------------------------- 113
              +Q+H  +FK G  S   V N L+  Y  C +                          
Sbjct: 148 THCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRD 207

Query: 114 -------------ND----ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
                        ND    A ++   M +   V+WN+++ G  H G+  EA  L  +M  
Sbjct: 208 EPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHS 267

Query: 157 TEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYT-----AIVGLL 210
             I+ D  T+  V+SA  +AG  + G Q + Y++R    ++P  + H+      A++ L 
Sbjct: 268 LGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRT--VVQP--SGHFVLSVNNALITLY 323

Query: 211 GRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            R G L EA    + M      S + A+LS C
Sbjct: 324 TRCGKLVEARRVFDKMPVKDLVS-WNAILSGC 354



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC        V+ ++   + +SWNA+IA     G G QA++ + +M +  I  D 
Sbjct: 452 ITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDR 511

Query: 63  FTITSIVGAIGVISGFKEGKQ---MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            T  +I+ A       KEG+       + + I  + + +  +RL+ +    G  ++A  V
Sbjct: 512 ITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHY--SRLIDLLCRAGMFSEAKNV 569

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164
             SM  E     W +LL GC  HG     +Q  +++ +   + DGT
Sbjct: 570 TESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGT 615



 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSS--MDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           ++     ++  Y+  G I  A+++F++  M  RD VS+N+++   +H      A+QLF Q
Sbjct: 61  DIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQ 120

Query: 154 MQKTEIKPDGTTFLVVLSA 172
           M++    PD  TF  VL A
Sbjct: 121 MKRLGFVPDPFTFSSVLGA 139


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 182/301 (60%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC+       V+  + ++N++SWNA+IAGF     GE  L  F+EM++ G    +FT 
Sbjct: 103 YARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTY 162

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S+  A   I   ++G+ +HA + K G     FV N ++ MYA  G++ DA KVF  MD+
Sbjct: 163 SSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDK 222

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDLV+WN++L   A +G  +EAV  FE+++K  I+ +  TFL VL+AC H G + +G  Y
Sbjct: 223 RDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHY 282

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M+ D +++ P  +HY + V LLGRAG L EA  F+  M   P  +V+ ALL AC++H
Sbjct: 283 FDMMK-DYNVQ-PEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMH 340

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++   +A  V +L P+D    VLL N+  +T  W+DA  +R +M   G++K+P  SW
Sbjct: 341 KNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSW 400

Query: 306 V 306
           V
Sbjct: 401 V 401



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 113/224 (50%), Gaps = 4/224 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +  D ++V+  + +R+ +SW  +IAG+       +A+    +M +A    + FT 
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 61

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A G   G   G+QMHAL  K  +D +V+V + L+ MYA C  ++ A  VF  +  
Sbjct: 62  TSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVS 121

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           ++ VSWN+L+ G A        +  F +MQ+        T+  + SA    G +++G   
Sbjct: 122 KNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWV 181

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
           + +L+++   L    A     ++G+  ++G + +A    + M +
Sbjct: 182 HAHLIKSGQKLT---AFVGNTMLGMYAKSGSMVDARKVFDRMDK 222



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 42/83 (50%)

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
           MY  CGA++DA  VF  M  RD+VSW  L+ G A +    EA+ L   M +   +P+G T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 166 FLVVLSACCHAGFIDKGLQYFYL 188
           F  +L A    G    G Q   L
Sbjct: 61  FTSLLKATGACGGCSIGEQMHAL 83


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  236 bits (602), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 191/301 (63%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C + +  + V+  +  ++Q S +++++G+   G  E AL  F E+R A + ID FT+
Sbjct: 594 YSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTV 653

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++GA+ +++    G Q+HA + K+G ++ V V + LV MY+ CG+I++ +KVF  +++
Sbjct: 654 SSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEK 713

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            DL+SW ++++  A HG   EA+++++ M+K   KPD  TF+ VLSAC H G +++G  +
Sbjct: 714 PDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSH 773

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M  +  +EP    HY  +V LLGR+G L EAE FIN+M   P   ++  LL+AC+VH
Sbjct: 774 LNSMAKEYGIEPGYY-HYACMVDLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVH 832

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E+   +AKRV++L P +   YV LSN+      W+D   IR+LM   G++K+PG+S 
Sbjct: 833 GDIELGRLAAKRVIELEPCEAGAYVTLSNICADMGWWEDVMKIRSLMEGTGVKKEPGWSS 892

Query: 306 V 306
           V
Sbjct: 893 V 893



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 3/159 (1%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           T+N   W  +I+ F   GS  +A++ F  M Q G+  D F  +S+   + +I     G+ 
Sbjct: 413 TKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSV---LSIIDSLSLGRL 469

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +H  I KIG  +++ V + L  MY+ CG++ ++  VF  M ++D VSW S++ G + H +
Sbjct: 470 IHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDH 529

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + +AVQLF +M   EI+PD  T    L+AC     ++KG
Sbjct: 530 AEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKG 568



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 92/179 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S  +   V+  +  ++ +SW ++I GF      EQA++ F EM    I  D  T+
Sbjct: 493 YSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTL 552

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+ + A   +   ++GK++H    +      V V   LV MY+ CGAI  A +VF  + +
Sbjct: 553 TAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQ 612

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +D  S +SL+ G A +GY  +A+ LF +++  ++  D  T   V+ A      +D G Q
Sbjct: 613 KDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQ 671



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 1/158 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C         +  +  RN +SW  II+GF        A   F EMR+ G  I+ +TI
Sbjct: 293 YAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTI 352

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A       KE  Q+H+ IFK G+  +  V + L+ MY+  G ++ + +VF  M+ 
Sbjct: 353 TSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMES 412

Query: 126 -RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
            ++L  W  ++   A  G +  AV+LF++M +  ++PD
Sbjct: 413 TKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPD 450



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 112/254 (44%), Gaps = 18/254 (7%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   V+  V   N + WNAII+G         AL  F +M       + FT +SI+ A  
Sbjct: 200 DALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACA 259

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +   + G+ +   + K G   +VFV   ++ +YA C  ++ A K F  M  R++VSW +
Sbjct: 260 ALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTT 319

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY-------- 185
           ++ G      S  A   F++M+K   K +  T   VL+AC     I + +Q         
Sbjct: 320 IISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTG 379

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           FYL  N +S          A++ +  + G ++ +E     M      +++  ++SA    
Sbjct: 380 FYLDSNVSS----------ALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQS 429

Query: 246 GNREIAVRSAKRVL 259
           G+   AV   +R+L
Sbjct: 430 GSTGRAVELFQRML 443



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 89/169 (52%), Gaps = 2/169 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLG-SGEQALKCFSEMRQAGIDIDYFT 64
           Y + +S +    ++      N ISWN +I+G CN   S E + + F +MR +G D + FT
Sbjct: 91  YCKSNSMVHALRLFDKTPHPNVISWNILISG-CNQNFSFEDSWRNFCKMRFSGFDPNQFT 149

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++ A   +     G+ +++L  K G+ SN +V+  ++ ++A   +  DA +VF  + 
Sbjct: 150 YGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVL 209

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
             ++V WN+++ G   +  +  A+ LF QM      P+  TF  +L+AC
Sbjct: 210 CENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTAC 258



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 88/201 (43%), Gaps = 9/201 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+C S  +   V+  +   + ISW A+I  +   G G +ALK +  MR+ G   D 
Sbjct: 692 VTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDS 751

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T   ++ A       +EG   ++++  + G +   +    +V +    G + +A +  +
Sbjct: 752 VTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFIN 811

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKP-DGTTFLVVLSACCHAG 177
           +M  E D + W  LL  C  HG     ++L     K   E++P +   ++ + + C   G
Sbjct: 812 NMPIEPDALLWGILLAACKVHG----DIELGRLAAKRVIELEPCEAGAYVTLSNICADMG 867

Query: 178 FIDKGLQYFYLMRNDASLEPP 198
           + +  ++   LM      + P
Sbjct: 868 WWEDVMKIRSLMEGTGVKKEP 888



 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 78  FKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            +  K +HA   K     SN F+ N L+  Y    ++  A ++F      +++SWN L+ 
Sbjct: 61  LRNTKILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILIS 120

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           GC  +    ++ + F +M+ +   P+  T+  VLSAC   G
Sbjct: 121 GCNQNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALG 161


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 187/302 (61%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +  +++D   V+  +  ++ ++W+A++AG+   G  E+A K F ++ + GI  + FT 
Sbjct: 438 YVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTF 497

Query: 66  TSIVGAIGVISGFKE-GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +S++ A    +   E GKQ HA   K+  ++ + V + LV MYA  G I+ A++VF    
Sbjct: 498 SSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQK 557

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ERDLVSWNS++ G + HG +++A+++F++MQK  +  D  TF+ V++AC HAG ++KG +
Sbjct: 558 ERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQK 617

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF  M ND  + P   +HY+ ++ L  RAG L +A   IN M   PG +V++ LL A +V
Sbjct: 618 YFNSMINDHHINPT-MKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARV 676

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N E+   +A++++ L P D A YVLLSN+  A   W +  ++R LM  R ++K+PGYS
Sbjct: 677 HRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYS 736

Query: 305 WV 306
           W+
Sbjct: 737 WI 738



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 124/249 (49%), Gaps = 6/249 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y + ++  D + V+  +  RN +SW +++AG+   G      + F +M+  G+  + +T+
Sbjct: 138 YMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTV 197

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++ A+        G Q+HA++ K G++  + V N L+ +Y+  G + DA  VF  M+ 
Sbjct: 198 STVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEI 257

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD V+WNS++ G   +G   E  ++F +MQ   +KP   TF  V+ +C       + L  
Sbjct: 258 RDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASL----RELAL 313

Query: 186 FYLMRNDASLEPPRAEH--YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
             LM+  A       +    TA++  L +   +++A S  + M        + A++S C 
Sbjct: 314 VKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCL 373

Query: 244 VHGNREIAV 252
            +G  + AV
Sbjct: 374 QNGGNDQAV 382



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 97/172 (56%), Gaps = 5/172 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRT-RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           ++  S+C    D  +++S +   +N +SW A+I+G    G  +QA+  FS+MR+ G+  +
Sbjct: 337 MVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPN 396

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           +FT ++I+     +       +MHA + K  Y+ +  V   L+  Y   G   DA KVF 
Sbjct: 397 HFTYSAILTVHYPVFV----SEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFE 452

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            ++ +DL++W+++L G A  G + EA +LF Q+ K  IKP+  TF  V++AC
Sbjct: 453 IIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINAC 504



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 94/170 (55%), Gaps = 1/170 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSR     D ++V+  +  R+ ++WN++IAG+   G   +  + F++M+ AG+   +
Sbjct: 236 ISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTH 295

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S++ +   +      K M     K G+ ++  V   L+   + C  ++DA  +FS 
Sbjct: 296 MTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSL 355

Query: 123 MDE-RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           M+E +++VSW +++ GC  +G + +AV LF QM++  +KP+  T+  +L+
Sbjct: 356 MEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT 405



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 4/197 (2%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVG-AIGVISGFKEGKQMHALIF 89
           N ++  +      ++AL  F  +  + +  D  T++ +     G + G K G+Q+H    
Sbjct: 62  NQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDG-KLGRQVHCQCV 120

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
           K G   +V V   LV MY     +ND  +VF  M ER++VSW SLL G + +G      +
Sbjct: 121 KFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWE 180

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL 209
           LF QMQ   + P+  T   V++A  + G +  GLQ   ++      E      + +++ L
Sbjct: 181 LFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPV--FNSLISL 238

Query: 210 LGRAGFLNEAESFINSM 226
             R G L +A    + M
Sbjct: 239 YSRLGMLRDARDVFDKM 255


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 122/301 (40%), Positives = 178/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +++  + V+  +  RN  +W  +I+G    G G +A   F +M + GI  D  T 
Sbjct: 480 YAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTY 539

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A       +  K++H+     G  S++ V N LV MYA CG+++DA +VF  M E
Sbjct: 540 VSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLE 599

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+ SW  ++ G A HG   +A+ LF +M+    KP+G +F+ VLSAC HAG +D+G + 
Sbjct: 600 RDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQ 659

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  +  D  +EP   EHYT +V LLGRAG L EA+ FI +M   PG + + ALL AC  +
Sbjct: 660 FLSLTQDYGIEPT-MEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTY 718

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+A  +AK  L L P   + YVLLSN+  AT  W+    +R++M  RGIRK+PG SW
Sbjct: 719 GNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSW 778

Query: 306 V 306
           +
Sbjct: 779 I 779



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 127/278 (45%), Gaps = 31/278 (11%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S  D + V+  +  R+ ISWNA+I G    G G +A   F +M+Q G   D 
Sbjct: 276 IHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDS 335

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S++        ++  K++H    ++G  S++ V +  V MY  CG+I+DA  +F  
Sbjct: 336 TTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDK 395

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--------- 173
           +  R++ +WN+++ G A     REA+ LF QM++    PD TTF+ +LSA          
Sbjct: 396 LAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWV 455

Query: 174 --CHAGFIDKGL-----------------QYFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214
              H+  ID GL                    Y  +    +       +T ++  L + G
Sbjct: 456 KEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHG 515

Query: 215 FLNEAESFINSMSRN---PGPSVYKALLSACQVHGNRE 249
             +EA S    M R    P  + Y ++LSAC   G  E
Sbjct: 516 CGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALE 553



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 92/167 (55%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D Q ++  +  RN ISW  +I G  + G G++A   F +M++ G   + +T 
Sbjct: 75  YVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTY 134

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A       +  K++H+     G   ++ V N LV MYA  G+I+DA  VF  M E
Sbjct: 135 VSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVE 194

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           RD+ SW  ++ G A HG  +EA  LF QM++    P+ TT+L +L+A
Sbjct: 195 RDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNA 241



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 87/148 (58%)

Query: 33  IIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIG 92
           +I G+   G  E A+K +S+MR+ G   +  T  SI+ A       K GK++HA I + G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 93  YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
           + S+V V+  LV MY  CG+I+DA  +F  M ER+++SW  ++ G AH+G  +EA   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 153 QMQKTEIKPDGTTFLVVLSACCHAGFID 180
           QMQ+    P+  T++ +L+A   AG ++
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALE 148



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 2/174 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  S  D + V+  +  R+  SW  +I G    G G++A   F +M + G   +  T 
Sbjct: 176 YAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTY 235

Query: 66  TSIVGAIGVIS--GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            SI+ A  + S    +  K++H    K G+ S++ V N L+ MYA CG+I+DA  VF  M
Sbjct: 236 LSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGM 295

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
            +RD++SWN+++ G A +G   EA  +F +MQ+    PD TT+L +L+     G
Sbjct: 296 CDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTG 349


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 184/301 (61%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C   ++ + ++  +  +  +SWN+II+GF +    E A + FS+M + G+  D FT 
Sbjct: 486 YGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTY 545

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++     ++  + GKQ+HA I K+   S+V++ + LV MY+ CG + D+  +F    +
Sbjct: 546 ATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPK 605

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD V+W++++   A+HG+  +A++LFE+MQ   +KP+ T F+ VL AC H G++DKGL Y
Sbjct: 606 RDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHY 665

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M++   L+ P  EHY+ +V LLGR+  +NEA   I SM       +++ LLS C++ 
Sbjct: 666 FQIMQSHYGLD-PHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQ 724

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+A ++   +L L P D + YVLL+NV      W +   IR++M N  ++K+PG SW
Sbjct: 725 GNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCSW 784

Query: 306 V 306
           +
Sbjct: 785 I 785



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 135/260 (51%), Gaps = 11/260 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++CD   D   V++++    + S+NAII G+     G +AL+ F  +++  +  D  ++
Sbjct: 284 YAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISL 343

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +  + A  VI G  EG Q+H L  K G   N+ V N ++ MY  CGA+ +A  +F  M+ 
Sbjct: 344 SGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMER 403

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQ---LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           RD VSWN+++   A H  + E V+   LF  M ++ ++PD  T+  V+ AC     ++ G
Sbjct: 404 RDAVSWNAII---AAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYG 460

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           ++ +  ++++   L+       +A+V + G+ G L EAE   + +      S + +++S 
Sbjct: 461 MEIHGRIVKSGMGLDWFVG---SALVDMYGKCGMLMEAEKIHDRLEEKTTVS-WNSIISG 516

Query: 242 CQVHGNREIAVRSAKRVLDL 261
                  E A R   ++L++
Sbjct: 517 FSSQKQSENAQRYFSQMLEM 536



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 126/262 (48%), Gaps = 7/262 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C + ++   ++  +  R+ +SWNAIIA         + L  F  M ++ ++ D FT 
Sbjct: 385 YGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTY 444

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+V A         G ++H  I K G   + FV + LV MY  CG + +A K+   ++E
Sbjct: 445 GSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEE 504

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +  VSWNS++ G +    S  A + F QM +  + PD  T+  VL  C +   I+ G Q 
Sbjct: 505 KTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQI 564

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +  +++ +   +   A   + +V +  + G + ++        +    + + A++ A   
Sbjct: 565 HAQILKLNLHSDVYIA---STLVDMYSKCGNMQDSRLMFEKTPKRDYVT-WSAMICAYAY 620

Query: 245 HGNREIAVR--SAKRVLDLWPN 264
           HG+ E A++     ++L++ PN
Sbjct: 621 HGHGEQAIKLFEEMQLLNVKPN 642



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q+++ ++  R+ +SWN++++ + + G   ++++ F  MR   I  DY T + ++ A   I
Sbjct: 92  QSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGI 151

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             +  G Q+H L  ++G++++V   + LV MY+ C  ++ A ++F  M ER+LV W++++
Sbjct: 152 EDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVI 211

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G   +    E ++LF+ M K  +    +T+  V  +C        G Q + + +++D +
Sbjct: 212 AGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFA 271

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
            +       TA + +  +   +++A    N++  NP    Y A++
Sbjct: 272 YDSIIG---TATLDMYAKCDRMSDAWKVFNTLP-NPPRQSYNAII 312



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 118/260 (45%), Gaps = 28/260 (10%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        ++  +  RN + W+A+IAG+       + LK F +M + G+ +   T 
Sbjct: 183 YSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTY 242

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+  +   +S FK G Q+H    K  +  +  +    + MYA C  ++DA KVF+++  
Sbjct: 243 ASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPN 302

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC----------- 174
               S+N++++G A      +A+++F+ +Q+T +  D  +    L+AC            
Sbjct: 303 PPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQL 362

Query: 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
           H   +  GL +   + N              I+ + G+ G L EA +  + M R    S 
Sbjct: 363 HGLAVKCGLGFNICVAN-------------TILDMYGKCGALVEACTIFDDMERRDAVS- 408

Query: 235 YKALLSACQVHGNREIAVRS 254
           + A+++A   H   E  V++
Sbjct: 409 WNAIIAA---HEQNEEIVKT 425



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 33/152 (21%)

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLV------------------ 104
           FT + I+     +     GKQ HA +    +   ++V N LV                  
Sbjct: 7   FTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDR 66

Query: 105 -------------FMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLF 151
                        F YA  G +  A  +F +M ERD+VSWNSLL    H+G +R+++++F
Sbjct: 67  MPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            +M+  +I  D  TF VVL AC  +G  D GL
Sbjct: 127 VRMRSLKIPHDYATFSVVLKAC--SGIEDYGL 156


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 179/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      Q  + S+   + ++W  +I+G    G  E+A   FS+MR  G+  D FTI
Sbjct: 562 YVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTI 621

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            ++  A   ++  ++G+Q+HA   K+   ++ FV   LV MYA CG+I+DA  +F  ++ 
Sbjct: 622 ATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEM 681

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            ++ +WN++L+G A HG  +E +QLF+QM+   IKPD  TF+ VLSAC H+G + +  ++
Sbjct: 682 MNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKH 741

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M  D  ++ P  EHY+ +   LGRAG + +AE+ I SMS     S+Y+ LL+AC+V 
Sbjct: 742 MRSMHGDYGIK-PEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQ 800

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E   R A ++L+L P D + YVLLSN+  A   WD+    RT+M    ++K PG+SW
Sbjct: 801 GDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSW 860

Query: 306 V 306
           +
Sbjct: 861 I 861



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 134/276 (48%), Gaps = 7/276 (2%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           ++WNA++AG+     G + LK F+ M + G   D FT+ ++    G +    +GKQ+HA 
Sbjct: 483 VAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAY 542

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
             K GYD +++V + ++ MY  CG ++ A   F S+   D V+W +++ GC  +G    A
Sbjct: 543 AIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERA 602

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAI 206
             +F QM+   + PD  T   +  A      +++G Q +   ++ + + +P      T++
Sbjct: 603 FHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVG---TSL 659

Query: 207 VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV--LDLWPN 264
           V +  + G +++A      +      + + A+L     HG  +  ++  K++  L + P+
Sbjct: 660 VDMYAKCGSIDDAYCLFKRIEM-MNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPD 718

Query: 265 DPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
                 +LS  S +    +    +R++  + GI+ +
Sbjct: 719 KVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPE 754



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 75/142 (52%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           N  ++ + + G     LKCF++M ++ ++ D  T   ++     +     G+Q+H +  K
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
           +G D  + V N L+ MY        A  VF +M ERDL+SWNS++ G A +G   EAV L
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403

Query: 151 FEQMQKTEIKPDGTTFLVVLSA 172
           F Q+ +  +KPD  T   VL A
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKA 425



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 131/270 (48%), Gaps = 13/270 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+ ++  R+ ISWN++IAG    G   +A+  F ++ + G+  D +T+TS++ A   +
Sbjct: 370 RTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSL 429

Query: 76  -SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
             G    KQ+H    KI   S+ FV   L+  Y+    + +A  +F   +  DLV+WN++
Sbjct: 430 PEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHN-FDLVAWNAM 488

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDA 193
           + G        + ++LF  M K   + D  T   V   C     I++G Q + Y +++  
Sbjct: 489 MAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGY 548

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA-- 251
            L+   +   + I+ +  + G ++ A+   +S+   P    +  ++S C  +G  E A  
Sbjct: 549 DLDLWVS---SGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGCIENGEEERAFH 604

Query: 252 VRSAKRVLDLWPNDPAIYVLLSNVSKATDC 281
           V S  R++ + P++  I  L    +KA+ C
Sbjct: 605 VFSQMRLMGVLPDEFTIATL----AKASSC 630



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 7/170 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGF-----CNLGSGEQALKCFSEMRQAG 57
           I  YS+C S    + V+  +  R+ +SWN+I+A +     C + + +QA   F  +RQ  
Sbjct: 81  ISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDV 140

Query: 58  IDIDYFTITSIVGAIGVISGFK-EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
           +     T++ ++  + + SG+    +  H    KIG D + FV   LV +Y   G + + 
Sbjct: 141 VYTSRMTLSPML-KLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEG 199

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
             +F  M  RD+V WN +L      G+  EA+ L      + + P+  T 
Sbjct: 200 KVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK  HA I     +   F+ N L+ MY+ CG++  A +VF  M +RDLVSWNS+L   A 
Sbjct: 58  GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQ 117

Query: 141 HGYS-----REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
                    ++A  LF  +++  +     T   +L  C H+G++
Sbjct: 118 SSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 161


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/289 (37%), Positives = 173/289 (59%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  ++++SW  +++G+ + G  E ALK F++MR   +    +T    V A G +  
Sbjct: 388 IFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGA 447

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K GKQ+HA + + G++++    N L+ MYA CGA+ DA  VF  M   D VSWN+++  
Sbjct: 448 LKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISA 507

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
              HG+ REA++LF+QM    I PD  +FL +L+AC HAG +D G QYF  M  D  + P
Sbjct: 508 LGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISP 567

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
              +HY  ++ LLGRAG + EA   I +M   P P++++A+LS C+++G+ E+   +A +
Sbjct: 568 GE-DHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQ 626

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +  + P     Y+LLSN   A   W DA  +R LM +RG++K+PG SW+
Sbjct: 627 LFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWI 675



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 93/182 (51%), Gaps = 10/182 (5%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++ +  +     + WNA+I+G+   G   +A + F  M    I  D FT TS++ A    
Sbjct: 250 RSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANA 309

Query: 76  SGFKEGKQMHALIFKIGYD----SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
             F  GK +H    ++  D    + + V N LV +Y+  G I  A K+F SM  +D+VSW
Sbjct: 310 GFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSW 369

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
           N++L G    G    A ++F++M  K+E+     +++V++S   H G  +  L+ F  MR
Sbjct: 370 NTILSGYIESGCLDNAARIFKEMPYKSEL-----SWMVMVSGYVHGGLAEDALKLFNQMR 424

Query: 191 ND 192
           ++
Sbjct: 425 SE 426



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 107/258 (41%), Gaps = 42/258 (16%)

Query: 10  DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA--GIDIDYFTITS 67
           DS+  F +V   V  R+ +  NA+I+ F        A+  F  +  +   +  D ++ TS
Sbjct: 107 DSAAFFDSV--PVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTS 164

Query: 68  IVGAIGVIS--GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC---GAINDANKVFSS 122
           ++ A+G +         Q+H  + K+G  + + V N L+ +Y  C   G   DA KV   
Sbjct: 165 LLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDE 224

Query: 123 MDERDLVS-------------------------------WNSLLLGCAHHGYSREAVQLF 151
           M E+D ++                               WN+++ G    G   EA +LF
Sbjct: 225 MPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELF 284

Query: 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHY-TAIVGL 209
            +M    I PD  TF  +LSAC +AGF   G   +   +R      P  A     A+V L
Sbjct: 285 RRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTL 344

Query: 210 LGRAGFLNEAESFINSMS 227
             ++G +  A    +SM+
Sbjct: 345 YSKSGKIAVATKIFDSMT 362



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 8/171 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---D 59
           +  Y+RC +  D + V+  +   + +SWNA+I+     G G +AL+ F +M   GI    
Sbjct: 474 LTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDR 533

Query: 60  IDYFTITSIVGAIGVI-SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           I + TI +     G++  GF+  + M    F I    + +   RL+ +    G I +A  
Sbjct: 534 ISFLTILTACNHAGLVDDGFQYFESMER-DFGISPGEDHYA--RLIDLLGRAGRIGEARD 590

Query: 119 VFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
           +  +M  E     W ++L GC  +G         +Q+ K   + DGT  L+
Sbjct: 591 LIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILL 641


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 179/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C        ++     +  +SWNAII+GF  L   E A K FS M + G++ D FT 
Sbjct: 529 YCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTY 588

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++     ++    GKQ+HA I K    S+V++ + LV MY+ CG + D+  +F     
Sbjct: 589 AAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPN 648

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD V+WN++L G AHHG   EA++LFE MQ   +KP+  TF+ VL AC H G +DKGL Y
Sbjct: 649 RDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHY 708

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M ++  L+ P++EHY+ +V +LGR+G ++EA + +  M       +++ LLS C++H
Sbjct: 709 FDVMLSEYGLD-PQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIH 767

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+A ++ + +L L P D +  VLLSN+      W +  ++R +M +  ++K+PG SW
Sbjct: 768 GNVEVAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSW 827

Query: 306 V 306
           +
Sbjct: 828 I 828



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 130/260 (50%), Gaps = 5/260 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D Q V SS+   +  S+NAII G+     G QALK F  + + G+  D  T+
Sbjct: 327 YAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITL 386

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +  + A   I G  EG+Q+H L  K    SN+ V N ++ MY  C A+ +A+ +F  M+ 
Sbjct: 387 SGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMER 446

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RD VSWN+++  C  +G   E +  F  M  + ++PD  T+  VL AC     ++ G++ 
Sbjct: 447 RDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEI 506

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +  ++++    +        A+V +  + G + +A+  I+  +       + A++S   +
Sbjct: 507 HTRIIKSGMGFDSFVG---AALVDMYCKCGMIEKADK-IHDRTEQKTMVSWNAIISGFSL 562

Query: 245 HGNREIAVRSAKRVLDLWPN 264
               E A +   R+L++  N
Sbjct: 563 LQQSEDAHKFFSRMLEMGVN 582



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 122/244 (50%), Gaps = 3/244 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D  +V+S +  +N +SW+A+IAG        + L+ F EM+  G+ +     
Sbjct: 226 YAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIY 285

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+  +   +S  + GK++H+   K  + S++ V    + MYA CG + DA KV SSM +
Sbjct: 286 ASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPK 345

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
             L S+N++++G A      +A++ F+ + KT +  D  T    L+AC       +G Q 
Sbjct: 346 CSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQV 405

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             L     S+      +  AI+ + G+   L EA    + M R    S + A+++AC+ +
Sbjct: 406 HGLAVKSISMSNICVAN--AILDMYGKCKALAEASDLFDMMERRDAVS-WNAIIAACEQN 462

Query: 246 GNRE 249
           GN E
Sbjct: 463 GNEE 466



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 93/171 (54%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+ C      +  +  +  R+ +SWN++I+GF   G   +++  F EM + G+  D 
Sbjct: 122 ISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDR 181

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            ++  ++ A G +     G Q+H L+ K G+D +V   + L+ MYA C  ++D+  VFS 
Sbjct: 182 ASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSE 241

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           + E++ VSW++++ GC  +  + E ++LF++MQ   +    + +  +  +C
Sbjct: 242 LPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSC 292



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 91/179 (50%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +  +  +++  +  R+ +SWNAIIA     G+ E+ L  F+ M  + ++ D FT 
Sbjct: 428 YGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTY 487

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A         G ++H  I K G   + FV   LV MY  CG I  A+K+    ++
Sbjct: 488 GSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQ 547

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           + +VSWN+++ G +    S +A + F +M +  + PD  T+  VL  C +   +  G Q
Sbjct: 548 KTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQ 606



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 31/135 (22%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMY-------------------------------AI 109
           GKQ HA +   G++   FV N L+ MY                               A 
Sbjct: 68  GKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISGYAS 127

Query: 110 CGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV 169
           CG ++ A K F  M ERD+VSWNS++ G   +G  R+++ +F +M +  +  D  +  VV
Sbjct: 128 CGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVV 187

Query: 170 LSACCHAGFIDKGLQ 184
           L AC      D G+Q
Sbjct: 188 LKACGALEECDMGVQ 202


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/290 (37%), Positives = 172/290 (59%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +  +N +SW  +++G+ + G  E ALK F++MR   +    +T    + A G + 
Sbjct: 389 EVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELG 448

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             K G+Q+HA + + G++++    N L+ MYA CGA+NDA  VF  M   D VSWN+++ 
Sbjct: 449 ALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMIS 508

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
               HG+ REA++LF+QM    I PD  +FL +L+AC HAG +D+G  YF  M+ D  + 
Sbjct: 509 ALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGIS 568

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
           P   +HY  ++ LLGR+G + EA   I +M   P PS+++A+LS C+ +G+ E    +A 
Sbjct: 569 PGE-DHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAAD 627

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++  + P     Y+LLSN   A   W DA  +R LM +RG++K+PG SW+
Sbjct: 628 QLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWI 677



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 123/268 (45%), Gaps = 40/268 (14%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++V+  V  +  + WNA+I+G+   G    A + F  M    + +D FT TS++ A    
Sbjct: 252 RSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANA 311

Query: 76  SGFKEGKQMHALIFKIG----YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
             F  GK +H  I ++      ++ + V N LV +Y+  G I  A ++F +M+ +D+VSW
Sbjct: 312 GFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSW 371

Query: 132 NSLL-----LGC--------------------------AHHGYSREAVQLFEQMQKTEIK 160
           N++L      GC                           H G S +A++LF QM+  ++K
Sbjct: 372 NTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVK 431

Query: 161 PDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
           P   T+   ++AC   G +  G Q + +L++     E   +    A++ +  + G +N+A
Sbjct: 432 PCDYTYAGAIAACGELGALKHGRQLHAHLVQ--CGFEASNSAG-NALLTMYAKCGAVNDA 488

Query: 220 ESFINSMSRNPGPSVYKALLSACQVHGN 247
                 M  N     + A++SA   HG+
Sbjct: 489 RLVFLVMP-NLDSVSWNAMISALGQHGH 515



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 39/242 (16%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIVGAIGVISGFKEGK- 82
           R+ +  NA+++ F        A+  F  +  +G +  D ++ T+++ A+G +        
Sbjct: 123 RDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHC 182

Query: 83  -QMHALIFKIGYDSNVFVQNRLVFMYAICGAIN---DANKVFSSMDERDLVSWNSLLLGC 138
            Q+H  + K G  + + V N L+ +Y  C       DA KV   M ++D ++W ++++G 
Sbjct: 183 TQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGY 242

Query: 139 AHH-------------------------------GYSREAVQLFEQMQKTEIKPDGTTFL 167
                                             G   +A +LF +M   ++  D  TF 
Sbjct: 243 VRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFT 302

Query: 168 VVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHY-TAIVGLLGRAGFLNEAESFINS 225
            VLSAC +AGF   G   +  ++R   +  P  A     A+V L  + G +  A+   ++
Sbjct: 303 SVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 362

Query: 226 MS 227
           M+
Sbjct: 363 MN 364



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 2/168 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++C +  D + V+  +   + +SWNA+I+     G G +AL+ F +M   GID D 
Sbjct: 476 LTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDR 535

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +  +I+ A        EG     ++    G         RL+ +    G I +A  +  
Sbjct: 536 ISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIK 595

Query: 122 SMDERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
           +M      S W ++L GC  +G         +Q+ +   + DGT  L+
Sbjct: 596 TMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILL 643


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 182/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S    + V+  +  +N +SW A++ G+   G  E+A++ F +M++ GI+ D FT+
Sbjct: 315 YCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTL 374

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   ++  +EG Q H      G  S + V N L+ +Y  CG+I D+N++F  M  
Sbjct: 375 GSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSF 434

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSW +L+ G A  G + E + LFE+M    +KPD  TF+ VLSAC  AG +++G QY
Sbjct: 435 RDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQY 494

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  +  P ++HYT ++ L GRAG L EA++FIN M  +P    +  LLS+C+++
Sbjct: 495 FESMLKDHGI-IPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLY 553

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN EI   +A+ +L+L P +PA Y+LLS++  A   W +   +R  M  +G RK+PG+SW
Sbjct: 554 GNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSW 613

Query: 306 V 306
           +
Sbjct: 614 I 614



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 141/267 (52%), Gaps = 5/267 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  ++ R+ ISW  +I G    G   +A+  F +MRQ G+ +D +T  S++ A G
Sbjct: 222 DSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACG 281

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +   KEGK++H LI + GY+ NVFV + LV MY  C ++  A  VF  M  +++VSW +
Sbjct: 282 GLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTA 341

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           +L+G   +G+S EAV++F  MQ+  I+PD  T   V+S+C +   +++G Q+        
Sbjct: 342 MLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSG 401

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            +      +  A++ L G+ G + ++    + MS     S + AL+S     G     + 
Sbjct: 402 LISFITVSN--ALITLYGKCGSIEDSNQLFDEMSFRDEVS-WTALVSGYAQFGKANETID 458

Query: 254 SAKRVL--DLWPNDPAIYVLLSNVSKA 278
             +R+L   L P+      +LS  S+A
Sbjct: 459 LFERMLVQGLKPDAVTFIAVLSACSRA 485



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 32/200 (16%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-DIDYFT 64
           YS+       Q ++S +  R+ +SWN++I+G+   GS  +A+K ++ M + G+ +++  T
Sbjct: 81  YSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRIT 140

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI--------------- 109
            ++++  +        G+Q+H  I K G+ + VFV + LV MYA                
Sbjct: 141 FSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQ 200

Query: 110 ----------------CGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                            G + D+ ++F  M ERD +SW +++ G   +G   EA+ LF  
Sbjct: 201 ERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRD 260

Query: 154 MQKTEIKPDGTTFLVVLSAC 173
           M++  +  D  TF  VL+AC
Sbjct: 261 MRQEGMAMDQYTFGSVLTAC 280



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 73/175 (41%), Gaps = 10/175 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S  D   ++  +  R+++SW A+++G+   G   + +  F  M   G+  D 
Sbjct: 413 ITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDA 472

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFK----IGYDSNVFVQNRLVFMYAICGAINDANK 118
            T  +++ A       + G+Q    + K    I +  +      ++ ++   G + +A  
Sbjct: 473 VTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTC---MIDLFGRAGRLEEAKN 529

Query: 119 VFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
             + M    D + W +LL  C  +G   E +  +      E+ P      ++LS+
Sbjct: 530 FINKMPFSPDSIGWATLLSSCRLYG--NEEIGKWAAESLLELDPQNPAGYILLSS 582



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           N F  N ++  Y+  G ++   ++FS M  RD VSWNSL+ G   +G   EAV+ +  M 
Sbjct: 70  NSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMM 129

Query: 156 KTEI-KPDGTTFLVVLSACCHAGFIDKGLQ 184
           K  +   +  TF  +L      G +D G Q
Sbjct: 130 KDGVLNLNRITFSTMLLLVSSQGCVDLGRQ 159


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 190/304 (62%), Gaps = 2/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++C +    + ++  +  R+ ISW A+I+G+   G  E+AL  F +M++ G  ++ 
Sbjct: 346 VTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNR 405

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             +   + +   I+  + GKQ+H  + K G+ +     N L+ MY  CG+I +A  VF  
Sbjct: 406 SALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFED 465

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + E+D+VSWN+++ G A HG+ +EA+ LFE M+ T IKPD  T + VLSAC H GF+DKG
Sbjct: 466 ITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKG 524

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           ++YF  M  +  +    A+HYT ++ LLGRAG L+EA + + SM   P  + + ALL A 
Sbjct: 525 MEYFNSMYQNYGI-TANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGAS 583

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HG+ E+  ++A++V ++ P++  +YVLLSN+  A+  W +  ++R+ M ++G++K PG
Sbjct: 584 RIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPG 643

Query: 303 YSWV 306
           YSWV
Sbjct: 644 YSWV 647



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 116/275 (42%), Gaps = 38/275 (13%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R+  +W A+++GF   G  ++A + F EM +           + V    +I
Sbjct: 266 RRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPE----------KNEVSWNAMI 315

Query: 76  SGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           +G+ + +Q+     +F      N    N +V  YA CG I+ A  +F  M +RD +SW +
Sbjct: 316 AGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAA 375

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-----------HAGFIDKG 182
           ++ G A  G S EA+ LF +M++     + +     LS+C            H   +  G
Sbjct: 376 MISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAG 435

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            Q  Y+  N             A++ + G+ G + EA      ++     S +  +++  
Sbjct: 436 FQTGYIAGN-------------ALLAMYGKCGSIEEAFDVFEDITEKDIVS-WNTMIAGY 481

Query: 243 QVHG-NREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276
             HG  +E         + + P+D  +  +LS  S
Sbjct: 482 ARHGFGKEALALFESMKMTIKPDDVTLVGVLSACS 516



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 18/177 (10%)

Query: 13  LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           L+ +N  S++   + + WN  I+ +   G  E AL  F+ MR+           S V   
Sbjct: 46  LESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRR----------RSTVTYN 95

Query: 73  GVISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
            +ISG+    +      +F+   D ++   N ++  Y   G ++ A  +F+ M E+D+VS
Sbjct: 96  AMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVS 155

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
           WN++L G A +G+  EA ++F+QM  K EI  +G     +LSA    G I+   + F
Sbjct: 156 WNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG-----LLSAYVQNGRIEDARRLF 207



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 114/255 (44%), Gaps = 31/255 (12%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++ +  ++ +SWNA+++GF   G  E+A K F +M           + + +   G++S 
Sbjct: 144 LFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----------LVKNEISWNGLLSA 193

Query: 78  FKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           + +  ++     +F    D  +   N L+  Y     ++DA  +F  M  RD +SWN ++
Sbjct: 194 YVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMI 253

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A +G   EA +LFE++   ++      +  ++S     G +D+  + F  M      
Sbjct: 254 TGYAQNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFEEM------ 303

Query: 196 EPPRAE-HYTAIVGLLGRAGFLNEAESFINSM-SRNPGPSVYKALLSACQVHGNREIAVR 253
            P + E  + A++    ++  + +A    + M SRN   S +  +++     GN    + 
Sbjct: 304 -PEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRN--TSSWNTMVTGYAQCGN----ID 356

Query: 254 SAKRVLDLWPNDPAI 268
            AK + D  P    I
Sbjct: 357 QAKILFDEMPQRDCI 371


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/290 (37%), Positives = 173/290 (59%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +  +N++SW  +++G+ + G  E ALK F+ MR   +    +T    + A G + 
Sbjct: 385 EVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELG 444

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             K GKQ+H  + ++G++ +    N L+ MYA CGA+ +AN +F  M   D VSWN+++ 
Sbjct: 445 SLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMIS 504

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
               HG+ REA++LF++M    I PD  +FL VL+AC H+G +D+G QYF  M+ D  + 
Sbjct: 505 ALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGII 564

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
           P   +HYT ++ LLGRAG + EA   I +M   P PS+++A+LS C+  G+ E+   +A 
Sbjct: 565 PGE-DHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAAD 623

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++  + P     Y+LLSN   A   W DA  +R LM +RG++K+PG SW+
Sbjct: 624 QLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWI 673



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 99/182 (54%), Gaps = 10/182 (5%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++V+  V  +  + WNA+I+G+ + G   +A + F  M    + +D FT TS++ A    
Sbjct: 248 RSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANA 307

Query: 76  SGFKEGKQMHALIFKIGY----DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
             F  GK +H  I ++      ++ + V N LV +Y+ CG I  A ++F +M  +D+VSW
Sbjct: 308 GFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSW 367

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
           N++L G        +AV++FE+M  K E+     +++V++S   H GF +  L+ F  MR
Sbjct: 368 NTILSGYVESSCLDKAVEVFEEMPYKNEL-----SWMVMVSGYVHGGFSEDALKLFNRMR 422

Query: 191 ND 192
            +
Sbjct: 423 AE 424



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 38/212 (17%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTIT 66
           R  +++ F +     R R+ +  NA+I+ +        A+  F  +  +G +  D ++ T
Sbjct: 103 RLPAAVSFFDAVPQAR-RDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFT 161

Query: 67  SIVGAIGVISGF--KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN---DANKVFS 121
           +++ A G +     +   Q+   + K G    + V N LV +Y  C A+    DA KV  
Sbjct: 162 ALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLD 221

Query: 122 SMDERDLVSWNSLLL-------------------------------GCAHHGYSREAVQL 150
            M ++D ++W ++++                               G  H G   EA +L
Sbjct: 222 EMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFEL 281

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           F +M    +  D  TF  VLSAC +AGF   G
Sbjct: 282 FRRMVLERVPLDEFTFTSVLSACANAGFFAHG 313



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 2/168 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+RC +  +   ++  +   + +SWNA+I+     G G +AL+ F  M   GI  D 
Sbjct: 472 ITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDR 531

Query: 63  FTITSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +  +++ A        EG Q   ++    G         RL+ +    G I +A  +  
Sbjct: 532 ISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIK 591

Query: 122 SMDERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
           +M      S W ++L GC   G         +Q+ K   + DGT  L+
Sbjct: 592 TMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILL 639


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/302 (38%), Positives = 177/302 (58%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C    +   ++  +  RN ++WN II G+  LG GE+A+  F+ M +  +     T
Sbjct: 382 VYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVT 441

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +S++ A   ++  + G Q+H+L  K  Y+ +  V N L+ MYA CG INDA   F  M+
Sbjct: 442 YSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMN 501

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +RD VSWN+++ G + HG S EA+ LF+ MQ T+ KP+  TF+ VLSAC +AG + KG  
Sbjct: 502 KRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQA 561

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +F  M  D  ++P   EHYT +V LLGR G  +EA   I  ++  P   V++ALL AC +
Sbjct: 562 HFESMSKDYDIKPC-IEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVI 620

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H   ++    A+ VL++ P+D A +VLLSN+      WD+   +R  M  + +RK+PG S
Sbjct: 621 HKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLS 680

Query: 305 WV 306
           WV
Sbjct: 681 WV 682



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 134/279 (48%), Gaps = 13/279 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++    +D Q ++  +   + I W+ +IA +      ++AL  F  MRQ  +  + FT 
Sbjct: 282 YAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTF 341

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A         GKQ+H+ + K G +SNVFV N ++ +YA CG I ++ K+F  + +
Sbjct: 342 ASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPD 401

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ V+WN++++G    G    A+ LF  M + +++P   T+  VL A      ++ GLQ 
Sbjct: 402 RNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQI 461

Query: 186 FYL----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
             L    M N  ++         +++ +  + G +N+A    + M++    S + A++  
Sbjct: 462 HSLTIKTMYNKDTVVA------NSLIDMYAKCGRINDARLTFDKMNKRDEVS-WNAMICG 514

Query: 242 CQVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKA 278
             +HG    A+      +  D  PN      +LS  S A
Sbjct: 515 YSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNA 553



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 93/169 (55%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++V+  +  ++ +SW  ++A +      E++L+ F++MR  G   + FTI+  + +   +
Sbjct: 191 RHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGL 250

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             F  GK +H    K  YD ++FV   L+ +YA  G I DA ++F  M + DL+ W+ ++
Sbjct: 251 EAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMI 310

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
              A    S+EA+ LF +M++T + P+  TF  VL AC  +  +D G Q
Sbjct: 311 ARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQ 359



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 83/168 (49%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y + +S  D   ++  +   N IS+  +  G+       QAL     + + G +++ F  
Sbjct: 80  YVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVF 139

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++  +  +        +HA ++K+G+ ++ FV   L+  Y++ G ++ A  VF  +  
Sbjct: 140 TTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICC 199

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +D+VSW  ++   A + +  E++QLF QM+    KP+  T    L +C
Sbjct: 200 KDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSC 247



 Score = 40.8 bits (94), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK +H  I K G   ++F QN L+  Y    ++ DA+K+F  M + + +S+ +L      
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLA----- 108

Query: 141 HGYSRE 146
            GYSR+
Sbjct: 109 QGYSRD 114


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 117/301 (38%), Positives = 186/301 (61%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C S  D + V+  +  R+ +++NA+I G+     G++ALK F  +++ G+  D  T 
Sbjct: 474 YSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTY 533

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A       +  +++H L+ K G+ S+  V N LV  YA CG+ +DA+ VF  M +
Sbjct: 534 INMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTK 593

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+++SWN+++ G A HG  ++A+QLFE+M+   +KPD  TF+ +LSAC HAG +++G +Y
Sbjct: 594 RNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRY 653

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D ++  P  EHY  +V LLGRAG L+EAE+ I +M       ++ ALL AC++H
Sbjct: 654 FCSMSQDFAI-IPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIH 712

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN  +A R+A+  L L  ++  +YV LS++  A   WD A  +R LM  RG+ K+PG SW
Sbjct: 713 GNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSW 772

Query: 306 V 306
           +
Sbjct: 773 I 773



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 152/278 (54%), Gaps = 5/278 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC S  D + V+  +  ++ ISW A+I G    G G +AL  + EM+QAG++ + 
Sbjct: 370 ISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNR 429

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T TSI+ A    +  + G+++H  + + G  ++  V N LV MY++CG++ DA +VF  
Sbjct: 430 VTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDR 489

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M +RD+V++N+++ G A H   +EA++LF+++Q+  +KPD  T++ +L+AC ++G ++  
Sbjct: 490 MIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWA 549

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +   L+R           +  A+V    + G  ++A      M++    S + A++   
Sbjct: 550 REIHTLVRKGGFFSDTSVGN--ALVSTYAKCGSFSDASIVFEKMTKRNVIS-WNAIIGGS 606

Query: 243 QVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
             HG  + A++  +R+    + P+      LLS  S A
Sbjct: 607 AQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHA 644



 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 152/325 (46%), Gaps = 33/325 (10%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  + + V+  +  ++ +SW   I G+ + G  E A + F +M Q G+  +  T 
Sbjct: 171 YAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITY 230

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A    +  K GK +H+ I   G++S+  V   LV MYA CG+  D  +VF  +  
Sbjct: 231 ISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVN 290

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH---------- 175
           RDL++WN+++ G A  GY  EA +++ QMQ+  + P+  T++++L+AC +          
Sbjct: 291 RDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEI 350

Query: 176 ------AGFI-DKGLQ--YFYLMRNDASLEPPR----------AEHYTAIVGLLGRAGFL 216
                 AGF  D G+Q     +     S++  R             +TA++G L ++GF 
Sbjct: 351 HSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFG 410

Query: 217 NEAESFINSMSR---NPGPSVYKALLSACQVHGNREIAVRSAKRVLDL-WPNDPAIYVLL 272
            EA +    M +    P    Y ++L+AC      E   R  ++V++     D  +   L
Sbjct: 411 AEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTL 470

Query: 273 SNVSKATDCWDDAGDIRTLMYNRGI 297
            N+        DA  +   M  R I
Sbjct: 471 VNMYSMCGSVKDARQVFDRMIQRDI 495



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 150/296 (50%), Gaps = 6/296 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++C S  D + V+  +  R+ I+WN +I G    G  E+A + +++M++ G+  + 
Sbjct: 269 VKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNK 328

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   ++ A    +    GK++H+ + K G+ S++ VQN L+ MY+ CG+I DA  VF  
Sbjct: 329 ITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDK 388

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  +D++SW +++ G A  G+  EA+ ++++MQ+  ++P+  T+  +L+AC     ++ G
Sbjct: 389 MVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWG 448

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +  +    +A L    A     +V +    G + +A    + M +      Y A++   
Sbjct: 449 -RRIHQQVVEAGLATD-AHVGNTLVNMYSMCGSVKDARQVFDRMIQRD-IVAYNAMIGGY 505

Query: 243 QVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
             H   + A++   R+ +  L P D   Y+ + N    +   + A +I TL+   G
Sbjct: 506 AAHNLGKEALKLFDRLQEEGLKP-DKVTYINMLNACANSGSLEWAREIHTLVRKGG 560



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 130/292 (44%), Gaps = 38/292 (13%)

Query: 3   ILTYSRCDSSLDFQNVYS--SVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           I  Y +C S  + + V+   S   R   SWNA++ G+   G  E+ALK   +M+Q G+  
Sbjct: 65  INMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAP 124

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D  TI S + +       + G+++H    + G   +V V N ++ MYA CG+I +A +VF
Sbjct: 125 DRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVF 184

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M+++ +VSW   + G A  G S  A ++F++M++  + P+  T++ VL+A      + 
Sbjct: 185 DKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALK 244

Query: 181 KGLQYFYLMRN-----DASLEPPRAEHYT------------------------AIVGLLG 211
            G      + N     D ++     + Y                          ++G L 
Sbjct: 245 WGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 304

Query: 212 RAGFLNEAESFINSMSRN---PGPSVYKALLSAC----QVHGNREIAVRSAK 256
             G+  EA    N M R    P    Y  LL+AC     +H  +EI  R AK
Sbjct: 305 EGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAK 356



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD--ERDLVSWNSLLLGC 138
           G+Q+H  I +     + +  N L+ MY  CG+I +A +V+  +   ER + SWN++++G 
Sbjct: 42  GRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGY 101

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEP 197
             +GY  +A++L  QMQ+  + PD TT +  LS+C   G ++ G + +F  M+     + 
Sbjct: 102 IQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDV 161

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
             A     I+ +  + G + EA    + M + 
Sbjct: 162 KVA---NCILNMYAKCGSIEEAREVFDKMEKK 190



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 90/208 (43%), Gaps = 18/208 (8%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           + TY++C S  D   V+  +  RN ISWNAII G    G G+ AL+ F  M+  G+  D 
Sbjct: 572 VSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDI 631

Query: 63  FTITSIVGAIGVISGFKEGK-------QMHALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
            T  S++ A       +EG+       Q  A+I  I +         +V +    G +++
Sbjct: 632 VTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEH------YGCMVDLLGRAGQLDE 685

Query: 116 ANKVFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC- 173
           A  +  +M  + +   W +LL  C  HG    A +  E   K ++  D     V LS   
Sbjct: 686 AEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDL--DNAVVYVALSHMY 743

Query: 174 CHAGFIDKGLQYFYLM-RNDASLEPPRA 200
             AG  D   +   LM +   + EP R+
Sbjct: 744 AAAGMWDSAAKLRKLMEQRGVTKEPGRS 771


>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 579

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/293 (38%), Positives = 178/293 (60%), Gaps = 1/293 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D ++++  +R R+ +SWN I+ G+   G GE+AL  FS+M + G+  D  T  S+  A  
Sbjct: 234 DARDLFQEIRCRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSVFIACA 293

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            ++  +EG + HAL+ K G+DS++ V N L+ +++ CG I D+  VF  +   DLVSWN+
Sbjct: 294 SLASLEEGSKAHALLIKHGFDSDLSVCNALITVHSKCGGIVDSELVFGQISHPDLVSWNT 353

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++   A HG   +A   F+QM    ++PDG TFL +LSACC AG +++ +  F LM ++ 
Sbjct: 354 IIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSACCRAGKVNESMNLFSLMVDNY 413

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            + PPR+EHY  +V ++ RAG L  A   IN M      S++ A+L+AC VH N E+   
Sbjct: 414 GI-PPRSEHYACLVDVMSRAGQLQRACKIINEMPFKADSSIWGAVLAACSVHLNVELGEL 472

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +A+R+L+L P +   YV+LSN+  A   W D   IR LM  +G++K+  YSW+
Sbjct: 473 AARRILNLDPFNSGAYVMLSNIYAAAGKWKDVHRIRVLMKEQGVKKQTAYSWL 525



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 102/258 (39%), Gaps = 73/258 (28%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ ++  RN +SW  +I G    G  E+A + F  M Q           + V    +I+G
Sbjct: 176 LFEAMPRRNSVSWVVMINGLVENGLCEEAWEVFVRMPQ----------KNDVARTAMITG 225

Query: 78  F-KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
           F KEG+                              + DA  +F  +  RDLVSWN ++ 
Sbjct: 226 FCKEGR------------------------------MEDARDLFQEIRCRDLVSWNIIMT 255

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM-----RN 191
           G A +G   EA+ LF QM +T ++PD  TF+ V  AC     +++G +   L+      +
Sbjct: 256 GYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDS 315

Query: 192 DAS------------------------LEPPRAEHYTAIVGLLGRAGFLNEAESFINSM- 226
           D S                        +  P    +  I+    + G  ++A S+ + M 
Sbjct: 316 DLSVCNALITVHSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMV 375

Query: 227 --SRNPGPSVYKALLSAC 242
             S  P    + +LLSAC
Sbjct: 376 TVSVQPDGITFLSLLSAC 393



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 15/146 (10%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           +V+  N  +   +  G ++ A K+F  M  +D+V+WNS+L     +G  + +  LF  M 
Sbjct: 28  DVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSMP 87

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF 215
              +     ++  +++AC     +    +Y       A+     A  Y AI+  L R G 
Sbjct: 88  LRNV----VSWNSIIAACVQNDNLQDAFRYL------AAAPEKNAASYNAIISGLARCGR 137

Query: 216 LNEAESFINSMSRNPGPSV--YKALL 239
           + +A+    +M   P P+V  Y A++
Sbjct: 138 MKDAQRLFEAM---PCPNVVSYTAMV 160



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 6/143 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +S+C   +D + V+  +   + +SWN IIA F   G  ++A   F +M    +  D 
Sbjct: 324 ITVHSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDG 383

Query: 63  FTITSIVGAIGVISGFKEGKQMHALI---FKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            T  S++ A        E   + +L+   + I   S  +    LV + +  G +  A K+
Sbjct: 384 ITFLSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHYAC--LVDVMSRAGQLQRACKI 441

Query: 120 FSSMD-ERDLVSWNSLLLGCAHH 141
            + M  + D   W ++L  C+ H
Sbjct: 442 INEMPFKADSSIWGAVLAACSVH 464


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 183/304 (60%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+ C  +     V+ ++  R+ I WN+++AG    GS E+AL  F  M QAG+    
Sbjct: 212 IDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVP 271

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T +S++   G ++  + GKQ+HA +   G++ NVF+ + L+ MY  CG I+ A+ +F  
Sbjct: 272 VTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDK 331

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M   D+VSW ++++G A HG +REA+ LFE+M+    KP+  TFL VL+AC HAG +DKG
Sbjct: 332 MSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKG 391

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M N   +  P  EH+ A+   LGRAG L+EA +FI+ M   P  SV+  LL AC
Sbjct: 392 WKYFKSMSNHYGI-VPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRAC 450

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH N  +A   AK++++L P     +V+LSN+  A+  W++A  +R  M  +G++K P 
Sbjct: 451 RVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPA 510

Query: 303 YSWV 306
            SW+
Sbjct: 511 CSWI 514



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 88/158 (55%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ +SWN ++ G    G   +AL    +M + G   D FT+++++      
Sbjct: 124 RKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAEC 183

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  K G ++H   F+ G+DS+VFV + L+ MYA C   + + KVF ++  RD + WNSLL
Sbjct: 184 ADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLL 243

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            GCA +G   EA+ +F +M +  ++P   TF  ++  C
Sbjct: 244 AGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVC 281



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 20/131 (15%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMY-------------AICG------AINDANKVFS 121
           G  +HAL  + G  ++ F  N L+ +Y             AI        A     KVF 
Sbjct: 69  GASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFD 128

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M ERD+VSWN+L+LGCA  G   EA+    +M +   +PD  T   VL        + +
Sbjct: 129 EMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKR 188

Query: 182 GLQ-YFYLMRN 191
           GL+ + +  RN
Sbjct: 189 GLEVHGFAFRN 199


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/290 (37%), Positives = 172/290 (59%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +  +N +SW  +++G+ + G  E ALK F++MR   +    +T    + A G + 
Sbjct: 391 EVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELG 450

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             K G+Q+HA + + G++++    N L+ MYA CGA+NDA  VF  M   D VSWN+++ 
Sbjct: 451 ALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMIS 510

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
               HG+ REA++LF+QM    I PD  +FL +L+AC HAG +D+G  YF  M+ D  + 
Sbjct: 511 ALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGIS 570

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
           P   +HY  ++ LLGR+G + EA   I +M   P PS+++A+LS C+ +G+ E    +A 
Sbjct: 571 PGE-DHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAAD 629

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++  + P     Y+LLSN   A   W DA  +R LM +RG++K+PG SW+
Sbjct: 630 QLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWI 679



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 35/204 (17%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++V+  V  +  + WNA+I+G+   G    A + F  M    + +D FT TS++ A    
Sbjct: 254 RSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANA 313

Query: 76  SGFKEGKQMHALIFKIG----YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
             F  GK +H  I ++      ++ + V N LV +Y+  G I  A ++F +M+ +D+VSW
Sbjct: 314 GFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSW 373

Query: 132 NSLL-----LGC--------------------------AHHGYSREAVQLFEQMQKTEIK 160
           N++L      GC                           H G S +A++LF QM+  ++K
Sbjct: 374 NTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVK 433

Query: 161 PDGTTFLVVLSACCHAGFIDKGLQ 184
           P   T+   ++AC   G +  G Q
Sbjct: 434 PCDYTYAGAIAACGELGALKHGRQ 457



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 39/242 (16%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIVGAIGVISGF--KEG 81
           R+ +  NA+++ F        A+  F  +  +G +  D ++ T+++ A+G +        
Sbjct: 125 RDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHC 184

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN---DANKVFSSMDERDLVSWNSLLLGC 138
            Q+H  + K G  + + V N L+ +Y  C       DA KV   M ++D ++W ++++G 
Sbjct: 185 TQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGY 244

Query: 139 AHH-------------------------------GYSREAVQLFEQMQKTEIKPDGTTFL 167
                                             G   +A +LF +M   ++  D  TF 
Sbjct: 245 VRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFT 304

Query: 168 VVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHY-TAIVGLLGRAGFLNEAESFINS 225
            VLSAC +AGF   G   +  ++R   +  P  A     A+V L  + G +  A+   ++
Sbjct: 305 SVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 364

Query: 226 MS 227
           M+
Sbjct: 365 MN 366



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 2/168 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++C +  D + V+  +   + +SWNA+I+     G G +AL+ F +M   GID D 
Sbjct: 478 LTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDR 537

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +  +I+ A        EG     ++    G         RL+ +    G I +A  +  
Sbjct: 538 ISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIK 597

Query: 122 SMDERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
           +M      S W ++L GC  +G         +Q+ +   + DGT  L+
Sbjct: 598 TMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILL 645


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 181/304 (59%), Gaps = 4/304 (1%)

Query: 6   YSRCDSSL-DFQNVYSSVRTRNQISWNAIIAGFCNLGS-GEQALKCFSEMRQAGIDIDYF 63
           YS+C   + + + V+  +   + + WN +I+GF       E  + CF EM+  G   D  
Sbjct: 288 YSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDC 347

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSS 122
           +   +  A   +S    GKQ+HAL  K     N V V N LV MY+ CG ++DA +VF +
Sbjct: 348 SFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDT 407

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E ++VS NS++ G A HG   E+++LFE M + +I P+  TF+ VLSAC H G +++G
Sbjct: 408 MPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEG 467

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF +M+    +EP  AEHY+ ++ LLGRAG L EAE  I +M  NPG   +  LL AC
Sbjct: 468 QKYFNMMKERFRIEP-EAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGAC 526

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + HGN E+AV++A   L L P + A YV+LSN+  +   W++A  ++ LM  RG++KKPG
Sbjct: 527 RKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPG 586

Query: 303 YSWV 306
            SW+
Sbjct: 587 CSWI 590



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 126/254 (49%), Gaps = 8/254 (3%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R+++SWNA+I        G +A++ F EM + G+ +D FT+ S++ A   +     G Q 
Sbjct: 206 RDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQF 265

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAIC-GAINDANKVFSSMDERDLVSWNSLLLGCAHH-G 142
           H ++ K G+  N  V + L+ +Y+ C G + +  KVF  +   DLV WN+++ G + +  
Sbjct: 266 HGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYED 325

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-MRNDASLEPPRAE 201
            S + +  F +MQ     PD  +F+ V SAC +      G Q   L +++D      R  
Sbjct: 326 LSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYN--RVS 383

Query: 202 HYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL-- 259
              A+V +  + G +++A    ++M  +   S+  ++++    HG    ++R  + +L  
Sbjct: 384 VNNALVAMYSKCGNVHDARRVFDTMPEHNMVSL-NSMIAGYAQHGVEVESLRLFELMLQK 442

Query: 260 DLWPNDPAIYVLLS 273
           D+ PN      +LS
Sbjct: 443 DIAPNTITFIAVLS 456



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 5/177 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +   + +S+N +IA + + G    AL+ F+E+R+    +D FT++ ++ A G  
Sbjct: 95  RQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGDD 154

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWN 132
            G    +Q+H  +   GYD    V N ++  Y+  G +N+A +VF  M E   RD VSWN
Sbjct: 155 VGLV--RQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWN 212

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           ++++ C  H    EAV+LF +M +  +K D  T   VL+A      +  G+Q+  +M
Sbjct: 213 AMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMM 269



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 37/198 (18%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN----------------------- 117
           GK +HAL FK     + ++ N    +Y+ CG++++A                        
Sbjct: 28  GKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLTQYPNVFSYNTLINAYAK 87

Query: 118 --------KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV 169
                   +VF  + + D+VS+N+L+   A  G  R A++LF ++++     DG T   V
Sbjct: 88  HSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGV 147

Query: 170 LSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
           + AC     + + L  F ++          A    A++    R GFLNEA      M   
Sbjct: 148 IIACGDDVGLVRQLHCFVVVCGYDCY----ASVNNAVLACYSRKGFLNEARRVFREMGEG 203

Query: 230 PGPS--VYKALLSACQVH 245
            G     + A++ AC  H
Sbjct: 204 GGRDEVSWNAMIVACGQH 221



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 82/173 (47%), Gaps = 8/173 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+C +  D + V+ ++   N +S N++IAG+   G   ++L+ F  M Q  I  + 
Sbjct: 389 VAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNT 448

Query: 63  FTITSIVGAIGVISGFKEGKQMHALI---FKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            T  +++ A       +EG++   ++   F+I  ++  +  + ++ +    G + +A ++
Sbjct: 449 ITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHY--SCMIDLLGRAGKLKEAERI 506

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             +M      + W +LL  C  HG    AV+   +    +++P      V+LS
Sbjct: 507 IETMPFNPGSIEWATLLGACRKHGNVELAVKAANEF--LQLEPYNAAPYVMLS 557


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/289 (40%), Positives = 175/289 (60%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  ++ +N +SWN++I+G    GS   ALK F  M   G   D  T    + +   ++ 
Sbjct: 410 IFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAA 469

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + GKQ+H L+ K GY +++FV N L+ MYA CG+I+ A  +F  +D  D+VSWNSL+  
Sbjct: 470 LQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAA 529

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G  REA++LF +M+   + PD  TF+ +LSAC H G ID+GL+ F  M    ++E 
Sbjct: 530 YALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIE- 588

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P AEHY  +V LLGRAG L EA   +  M  N    ++ ALL AC++HGN E+A  +A++
Sbjct: 589 PLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEK 648

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +L+  P+  + YVLLSN+      WD+   +R LM  +G  K+PG+SW+
Sbjct: 649 LLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWI 697



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 26/260 (10%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID----------------- 59
           +++  +  +N ISW  +I G+  +G  ++A +  ++M    +                  
Sbjct: 285 SLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDD 344

Query: 60  ----IDYFTITSIVGAIGVISGFKE-GKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAI 113
                +  +I  +V    +I+G+ + G+   AL +FK     ++   N +V  YA  G +
Sbjct: 345 ARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQM 404

Query: 114 NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           + A K+F  M E+++VSWNSL+ G   +G   +A++ F  M     KPD +TF   LS+C
Sbjct: 405 DAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSC 464

Query: 174 CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS 233
            H   +  G Q   L+            +  A++ +  + G ++ AE     +      S
Sbjct: 465 AHLAALQVGKQLHQLVMKSGYATDLFVSN--ALITMYAKCGSISSAELLFKDIDHFDVVS 522

Query: 234 VYKALLSACQVHGNREIAVR 253
            + +L++A  ++GN   A++
Sbjct: 523 -WNSLIAAYALNGNGREALK 541



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 114/239 (47%), Gaps = 19/239 (7%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           ++R     + + ++  +  RN ++WNA+IA +      ++A+  F EM +     +  + 
Sbjct: 243 FARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEK----NSISW 298

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++     +    E +Q   L+ ++ Y  NV  Q  ++  Y     ++DA ++F+ +  
Sbjct: 299 TTVINGYVRMGKLDEARQ---LLNQMPY-RNVAAQTAMISGYVQNKRMDDARQIFNQISI 354

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+V WN+++ G +  G   EA+ LF+QM    +K D  ++  ++++    G +D  ++ 
Sbjct: 355 RDVVCWNTMIAGYSQCGRMDEALHLFKQM----VKKDIVSWNTMVASYAQVGQMDAAIKI 410

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESF--INSMSRNPGPSVYKALLSAC 242
           F  M+     E       + I GL     +L+  +SF  +    + P  S +   LS+C
Sbjct: 411 FEEMK-----EKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSC 464



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 97/213 (45%), Gaps = 17/213 (7%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +  RN +SWN++IA + +    E+A + F +M       D ++ T ++    
Sbjct: 64  DARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTR----DLYSWTLMITCYT 119

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
                 + + +  L+    Y  N    N +V  YA     ++A ++F +M  +DLVSWNS
Sbjct: 120 RNGELAKARNLFNLL---PYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNS 176

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           +L G   +G  R  +Q FE+M + ++     ++ +++      G ++   ++F  + N  
Sbjct: 177 MLTGYTRNGEMRLGLQFFEEMAERDV----VSWNLMVDGFVEVGDLNSSWEFFEKIPN-- 230

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
               P    +  ++    R G + EA    + M
Sbjct: 231 ----PNTVSWVTMLCGFARFGKIAEARRLFDQM 259



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 90/200 (45%), Gaps = 7/200 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S    + ++  +   + +SWN++IA +   G+G +ALK F +M   G+  D 
Sbjct: 496 ITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDE 555

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVF 120
            T   I+ A   +    +G ++   + +  Y+     ++   +V +    G + +A ++ 
Sbjct: 556 VTFVGILSACSHVGLIDQGLKLFKCMVQ-AYNIEPLAEHYACMVDLLGRAGRLEEAFQLV 614

Query: 121 SSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-CHAGF 178
             M    +   W +LL  C  HG    A    E++   E +P  T+  V+LS     AG 
Sbjct: 615 RGMKINANAGIWGALLGACRIHGNLELAKFAAEKL--LEFEPHKTSNYVLLSNMQAEAGR 672

Query: 179 IDKGLQYFYLMRNDASLEPP 198
            D+  +   LM+   + + P
Sbjct: 673 WDEVARVRRLMKEKGAEKQP 692



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 41/72 (56%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +F+     N    N ++  +A  G I+DA ++F  M +R++VSWNS++    H+    EA
Sbjct: 37  VFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEA 96

Query: 148 VQLFEQMQKTEI 159
            QLF++M   ++
Sbjct: 97  RQLFDKMPTRDL 108



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 85/183 (46%), Gaps = 18/183 (9%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++ ++  ++ +SWN+++ G+   G     L+ F EM +            +V    ++
Sbjct: 160 RRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAE----------RDVVSWNLMV 209

Query: 76  SGFKEGKQMHA--LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            GF E   +++    F+   + N      ++  +A  G I +A ++F  M  R++V+WN+
Sbjct: 210 DGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNA 269

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RN 191
           ++     + +  EA+ LF +M +     +  ++  V++     G +D+  Q    M  RN
Sbjct: 270 MIAAYVQNCHVDEAISLFMEMPEK----NSISWTTVINGYVRMGKLDEARQLLNQMPYRN 325

Query: 192 DAS 194
            A+
Sbjct: 326 VAA 328



 Score = 43.9 bits (102), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 16/172 (9%)

Query: 93  YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
           + S VF  N  +      G I++A KVF  M  ++ V+ NS++   A +G   +A QLF+
Sbjct: 11  HGSYVFRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFD 70

Query: 153 QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEH-YTAIVGLLG 211
            M +  I     ++  +++A  H   +++  Q F  M       P R  + +T ++    
Sbjct: 71  GMPQRNI----VSWNSMIAAYLHNDRVEEARQLFDKM-------PTRDLYSWTLMITCYT 119

Query: 212 RAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263
           R G L +A +  N +     P    A+++      NR+     A+R+ D  P
Sbjct: 120 RNGELAKARNLFNLLPYKWNPVCCNAMVAG--YAKNRQF--DEARRLFDAMP 167


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 124/304 (40%), Positives = 182/304 (59%), Gaps = 4/304 (1%)

Query: 6   YSRCDSSL-DFQNVYSSVRTRNQISWNAIIAGFCNLGS-GEQALKCFSEMRQAGIDIDYF 63
           YS+C  S+ + + V+  +   + + WN +I+GF       E  L CF EM++ G   D  
Sbjct: 288 YSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDC 347

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSS 122
           +   +  A   +S    GKQ+HAL  K     N V V N LV MY+ CG ++DA +VF +
Sbjct: 348 SFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDT 407

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E + VS NS++ G A HG   E+++LFE M + +I P+  TF+ VLSAC H G +++G
Sbjct: 408 MPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEG 467

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF +M+    +EP  AEHY+ ++ LLGRAG L EAE  I +M  NPG   +  LL AC
Sbjct: 468 QKYFNMMKERFCIEP-EAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGAC 526

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + HGN E+AV++A   L L P + A YV+LSN+  +   W++A  ++ LM  RG++KKPG
Sbjct: 527 RKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPG 586

Query: 303 YSWV 306
            SW+
Sbjct: 587 CSWI 590



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 129/254 (50%), Gaps = 8/254 (3%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R+++SWNA+I        G +A+  F EM + G+ +D FT+ S++ A   +     G+Q 
Sbjct: 206 RDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQF 265

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAIC-GAINDANKVFSSMDERDLVSWNSLLLGCA-HHG 142
           H ++ K G+  N  V + L+ +Y+ C G++ +  KVF  +   DLV WN+++ G + +  
Sbjct: 266 HGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYED 325

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-MRNDASLEPPRAE 201
            S + +  F +MQ+   +PD  +F+ V SAC +      G Q   L +++D      R  
Sbjct: 326 LSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYN--RVS 383

Query: 202 HYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL-- 259
              A+V +  + G +++A    ++M  +   S+  ++++    HG    ++R  + +L  
Sbjct: 384 VNNALVAMYSKCGNVHDARRVFDTMPEHNTVSL-NSMIAGYAQHGVEVESLRLFELMLEK 442

Query: 260 DLWPNDPAIYVLLS 273
           D+ PN      +LS
Sbjct: 443 DIAPNSITFIAVLS 456



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 5/177 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +   + +S+N +IA + + G     L+ F E+R+  + +D FT++ ++ A G  
Sbjct: 95  RRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITACGDD 154

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWN 132
            G    +Q+H  +   G+D    V N ++  Y+  G +++A +VF  M E   RD VSWN
Sbjct: 155 VGLV--RQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWN 212

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           ++++ C  H    EAV LF +M +  +K D  T   VL+A      +  G Q+  +M
Sbjct: 213 AMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMM 269



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 6/159 (3%)

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
           F +    NVF  N L+  YA    I+ A +VF  + + D+VS+N+L+   A  G     +
Sbjct: 67  FHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTL 126

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208
           +LFE++++  +  DG T   V++AC     + + L  F ++          A    A++ 
Sbjct: 127 RLFEEVRELRLGLDGFTLSGVITACGDDVGLVRQLHCFVVVCGHDCY----ASVNNAVLA 182

Query: 209 LLGRAGFLNEAESFINSMSRNPGPS--VYKALLSACQVH 245
              R GFL+EA      M    G     + A++ AC  H
Sbjct: 183 CYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQH 221



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+C +  D + V+ ++   N +S N++IAG+   G   ++L+ F  M +  I  + 
Sbjct: 389 VAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNS 448

Query: 63  FTITSIVGAIGVISGFKEGKQMHALI---FKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            T  +++ A       +EG++   ++   F I  ++  +  + ++ +    G + +A ++
Sbjct: 449 ITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHY--SCMIDLLGRAGKLKEAERI 506

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
             +M      + W +LL  C  HG    AV+   +  + E
Sbjct: 507 IETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLE 546


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 116/289 (40%), Positives = 180/289 (62%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+S +  ++ +SW +++ G+ + GS E+A+K F +MR +G+  D   + S++ A   ++ 
Sbjct: 98  VFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTV 157

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G+Q+HA + K G +S++ V N LV MYA CG+I DAN+ F +M  RD++SW +L++G
Sbjct: 158 MDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVG 217

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G  + ++Q ++QM  T  KPD  TF+ +L AC H G +  G  YF  M     ++P
Sbjct: 218 YAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKP 277

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
              EHY  ++ LLGR+G L EA+  +N M   P   V+KALL+AC+VH   E+   +AK 
Sbjct: 278 G-PEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKN 336

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +L P +   YV+LSN+  A   W+DA  IR LM +RGI K+PGYSW+
Sbjct: 337 LFELEPMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKEPGYSWI 385



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 91/159 (57%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           +++SWN++I G    G  E AL  F +MR   + ID +T+ S++ +   +   +    +H
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
            LI K G+++   V N L+ MYA  G ++ A  VFS M ++D+VSW SL+ G +H+G   
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYE 124

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           EA++LF +M+ + + PD      VLSAC     +D G Q
Sbjct: 125 EAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQ 163



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 8/173 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++C S +D    + ++ TR+ ISW A+I G+   G G+ +L+ + +M   G   DY
Sbjct: 184 VTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDY 243

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T   ++ A         G+     + K+ G          ++ +    G + +A  + +
Sbjct: 244 ITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLN 303

Query: 122 SM-DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT--EIKPDGTTFLVVLS 171
            M    D V W +LL  C  H    + ++L E   K   E++P  +   V+LS
Sbjct: 304 QMVVAPDAVVWKALLAACRVH----KELELGEMAAKNLFELEPMNSMPYVMLS 352



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 27/170 (15%)

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA---------- 172
           M+  D VSWNSL+LGC   G+  +A+  F++M+  ++K D  T   VL++          
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNA 60

Query: 173 -CCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPG 231
              H   I  G + + L+ N             A++ +  + G L+ A    + M     
Sbjct: 61  ISVHCLIIKTGFEAYKLVNN-------------ALIDMYAKQGKLDCAIMVFSKMVDKDV 107

Query: 232 PSVYKALLSACQVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKAT 279
            S + +L++    +G+ E A++     R+  ++P+  A+  +LS  ++ T
Sbjct: 108 VS-WTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELT 156


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 186/302 (61%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS+C   LD    V+  +  R+ ISW+ +I+G+   G GE+A    S MR+ G   + F 
Sbjct: 315 YSKC-WQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFA 373

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++   G ++  ++GKQ+HA +  +G + N  VQ+ L+ MY+ CG+I +A+K+F   +
Sbjct: 374 FASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAE 433

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             ++VSW +++ G A HGYS+EA+ LF+++ K  ++PD  TF+ VL+AC HAG +D G  
Sbjct: 434 YNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFH 493

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF  +     + P + +HY  ++ LL RAG LN+AES I SM       V+  LL AC++
Sbjct: 494 YFNSLSKVHQICPSK-DHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRI 552

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HG+ +   R+A+++L L PN    ++ L+N+  A   W +A ++R +M ++G+ K+PG+S
Sbjct: 553 HGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGWS 612

Query: 305 WV 306
           W+
Sbjct: 613 WI 614



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 90/167 (53%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  RN +SW AIIAG    G  ++AL  FS+M    +  D +T +S + A      
Sbjct: 125 VFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGA 184

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G+++H    K G+ +  FV N L  MY  CG ++   ++F SM +RD+VSW ++++ 
Sbjct: 185 LNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMS 244

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
               G    AV+ F +M++T++ P+  TF  V+S C   G I+ G Q
Sbjct: 245 NVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQ 291



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 133/276 (48%), Gaps = 7/276 (2%)

Query: 6   YSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C   LD+   ++ S+  R+ +SW  II     +G  E A+K F  MR+  +  + FT
Sbjct: 214 YNKC-GKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFT 272

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             +++     +   + G+Q+HA + + G   ++ V N ++ MY+ C  ++ A+ VF  + 
Sbjct: 273 FAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLS 332

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD++SW++++ G A  G   EA      M++   +P+   F  VLS C +   +++G Q
Sbjct: 333 RRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQ 392

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
             +       LE       +A++ +  + G + EA    +    N   S + A+++    
Sbjct: 393 -LHAHVLCVGLEQNTMVQ-SALINMYSKCGSIKEASKIFDEAEYNNIVS-WTAMINGYAE 449

Query: 245 HGNREIAVRSAKRV--LDLWPNDPAIYVLLSNVSKA 278
           HG  + A+   K++  + L P+      +L+  S A
Sbjct: 450 HGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHA 485



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 130/263 (49%), Gaps = 10/263 (3%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGV 74
           + ++  +  R++ISW  II+G+ N  +  +AL  FS+M  + G+ +D F ++  + A G+
Sbjct: 21  RQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLALKACGL 80

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
                 G+ +H    K  + ++VFV + LV MY   G +++   VF  M  R++VSW ++
Sbjct: 81  NMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAI 140

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + G    GY++EA+  F  M   ++  D  TF   L AC  +G ++ G +    +     
Sbjct: 141 IAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGRE----IHCQTL 196

Query: 195 LEPPRAEHYTA--IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            +   A  + A  +  +  + G L+       SM++    S    ++S  Q+ G  E AV
Sbjct: 197 KKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQI-GQEENAV 255

Query: 253 RSAKRV--LDLWPNDPAIYVLLS 273
           ++ +R+   D+ PN+     ++S
Sbjct: 256 KAFRRMRETDVSPNEFTFAAVIS 278


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 185/305 (60%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSV-RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I TY++C  +     V++ +   + +ISWNA+I GF      E A + F+ M+   +  D
Sbjct: 262 ITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPD 321

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            FT+ S++ A+  IS   + + +H    +   D +V+V   L+ MY+ CG ++ A ++F 
Sbjct: 322 SFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFD 381

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           S  +R +++WN+++ G   HG+ + AV+LFE+M+ T   P+ TTFL VL+AC HAG +D+
Sbjct: 382 SARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDE 441

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G +YF  M+ D  LEP   EHY  +V LLGRAG L+EA SFI +M   PG SVY A+L A
Sbjct: 442 GQKYFASMKKDYGLEPG-MEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGA 500

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++H N E+A  SA+ + +L P +   +VLL+N+      W D   +RT M  +G++K P
Sbjct: 501 CKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTP 560

Query: 302 GYSWV 306
           G+S +
Sbjct: 561 GWSII 565



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 96/168 (57%), Gaps = 1/168 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +    + V+  +  RN +SWNA+I G+ + G+  +A+  F  M Q G+D+   ++
Sbjct: 164 YCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASV 223

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-D 124
            + + A G +    E +++H L+ ++G  SNV V N L+  YA C   + A +VF+ + +
Sbjct: 224 LAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGN 283

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           ++  +SWN+++LG   +    +A +LF +MQ   ++PD  T + V+ A
Sbjct: 284 KKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPA 331



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 2/178 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR--QAGIDIDYF 63
           Y +C    D + V+  + +R++++WNA++AG+   G    A++    M+  + G   D  
Sbjct: 61  YFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSV 120

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T+ S++ A          +++HA   + G D  V V   ++  Y  CGA+  A  VF  M
Sbjct: 121 TLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCM 180

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
             R+ VSWN+++ G A +G + EA+ LF +M +  +     + L  L AC   G++D+
Sbjct: 181 PVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDE 238



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T T+++      +    G+ +HA +   G  S       L  MY  C    DA +VF  M
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE--IKPDGTTFLVVLSACCHA 176
             RD V+WN+++ G A +G    A++   +MQ  E   +PD  T + VL AC  A
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADA 132


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/300 (38%), Positives = 179/300 (59%), Gaps = 1/300 (0%)

Query: 7   SRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT 66
           S  +S  D  NV+ S+ +++++SWN+I+ GF   G  E ALK F  MR A +DID++  +
Sbjct: 350 SSSNSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFS 409

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
           +++ +   ++  + G+Q+H L  K G++SN FV + L+FMY+ CG I DA K F    + 
Sbjct: 410 AVLRSCSDLATLQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKD 469

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
             ++WNS++   A HG    A+ LF QM+  ++K D  TF+  L+AC H G +++G    
Sbjct: 470 SSITWNSIMFAYAQHGQGDVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGRYLL 529

Query: 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
             M +D  +  PR EHY   V L GRAG+L+EA++ I SM  +P   V+K LL AC+  G
Sbjct: 530 KSMASDYGI-SPRMEHYACAVDLFGRAGYLDEAKALIESMPFDPDAMVWKTLLGACRACG 588

Query: 247 NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + E+A + A  +L+L P +   YV+LSN+      WD+   +  LM  R ++K PG+SW+
Sbjct: 589 DIELAAQVASHLLELEPEEHCTYVILSNMYGHLKRWDEKACMARLMRERKVKKVPGWSWI 648



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 143/299 (47%), Gaps = 12/299 (4%)

Query: 6   YSRCDSS-LDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           Y+RC S  L F  N++  +  R+ ++WN +I+G+ N GS   A + +  M+  G+  D +
Sbjct: 44  YTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSGSLGSAWELYKSMKSFGLMPDAY 103

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T  SI+  +        G+Q+H+LI K+GY+ +V+  + L+ MYA C  + DA  VF  +
Sbjct: 104 TFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKCERVRDAFMVFKCI 163

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             R+ VSWN+L+ G    G    A  L   M++  ++ D  TF  +L+      F    +
Sbjct: 164 PRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLLTLLDEKKFYKLTM 223

Query: 184 Q-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           Q +  ++++    +        A +    + G L +AE   +    +     + ++L+A 
Sbjct: 224 QLHCKIIKHGVQFDNTVC---NATITSYSQCGSLEDAERVFDGAVGSRDLVTWNSMLAAF 280

Query: 243 QVHGNREIAVRSAKRVLDL--WPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
             H  +E A    K  LD+  +  +P IY   + +S A    D+   +  L+  RG+ +
Sbjct: 281 LAHDRKETAF---KLFLDMQQFGFEPDIYTYTTIIS-ACSHKDNGKSLHGLVIKRGLEQ 335



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 131/253 (51%), Gaps = 9/253 (3%)

Query: 3   ILTYSRCDSSLDFQNVYS-SVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I +YS+C S  D + V+  +V +R+ ++WN+++A F      E A K F +M+Q G + D
Sbjct: 245 ITSYSQCGSLEDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPD 304

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMY--AICGAINDANKV 119
            +T T+I+ A    S    GK +H L+ K G +  V + N ++ MY  +   ++ DA  V
Sbjct: 305 IYTYTTIISAC---SHKDNGKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNV 361

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F SM+ +D VSWNS+L G +  G+S  A++LF  M+   +  D   F  VL +C     +
Sbjct: 362 FHSMESKDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATL 421

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
             G Q  +++   +  E       ++++ +  + G + +A       +++   + + +++
Sbjct: 422 QLG-QQIHVLTVKSGFESNDFV-ASSLIFMYSKCGMIEDARKSFEKTAKDSSIT-WNSIM 478

Query: 240 SACQVHGNREIAV 252
            A   HG  ++A+
Sbjct: 479 FAYAQHGQGDVAL 491



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 4/171 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    D +  +      + I+WN+I+  +   G G+ AL  F +MR   + +D+
Sbjct: 447 IFMYSKCGMIEDARKSFEKTAKDSSITWNSIMFAYAQHGQGDVALGLFFQMRDKKVKMDH 506

Query: 63  FTITSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T  + + A   I   ++G+  + ++    G    +      V ++   G +++A  +  
Sbjct: 507 ITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEHYACAVDLFGRAGYLDEAKALIE 566

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           SM  + D + W +LL  C   G    A Q+   +   E++P+     V+LS
Sbjct: 567 SMPFDPDAMVWKTLLGACRACGDIELAAQVASHL--LELEPEEHCTYVILS 615


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 179/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+       ++SS+R  N++SWN I+ GF   G GE+AL  F EM+ A +     T 
Sbjct: 409 YAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTY 468

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A    +  +   Q+H  I K  ++++  + N L+  YA CG I DA KVF  + E
Sbjct: 469 SSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLME 528

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD++SWN+++ G A HG + +A++LF++M K+ ++ +  TF+ +LS C   G ++ GL  
Sbjct: 529 RDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSL 588

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  MR D  ++P   EHYT IV LLGRAG LN+A  FI  +   P   V++ALLS+C +H
Sbjct: 589 FDSMRIDHGIKPS-MEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIH 647

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +   SA+++L++ P D   YVLLSN+  A    D    +R  M N G+RK PG SW
Sbjct: 648 KNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSW 707

Query: 306 V 306
           V
Sbjct: 708 V 708



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 97/180 (53%), Gaps = 6/180 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D +  +  +   + I  + +I+ +      EQA + F  + ++ +  + +++
Sbjct: 308 YAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSL 367

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   +     GKQ+H    KIG++S++FV N L+  YA C  ++ + K+FSS+ +
Sbjct: 368 SSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRD 427

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC------HAGFI 179
            + VSWN++++G +  G   EA+ +F +MQ  ++     T+  VL AC       HAG I
Sbjct: 428 ANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQI 487



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 89/182 (48%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS C    D ++V++ +  ++ + W A+++ +      E A + FS+MR +G   + 
Sbjct: 204 IDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNP 263

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F +TS++ A   +     GK +H    K   D+   V   L+ MYA CG I DA   F  
Sbjct: 264 FALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEM 323

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +   D++  + ++   A    + +A +LF ++ ++ + P+  +   VL AC +   +D G
Sbjct: 324 IPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFG 383

Query: 183 LQ 184
            Q
Sbjct: 384 KQ 385



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 84/171 (49%), Gaps = 2/171 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN +S+  ++      G  E A   F  +R  G +++ F +T+++     +
Sbjct: 116 RRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAM 175

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                   +H+  +K+G+D N FV + L+  Y++C  ++DA  VF+ +  +D V W +++
Sbjct: 176 DAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMV 235

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA--CCHAGFIDKGLQ 184
              + +     A ++F +M+ +  KP+      VL A  C  +  + KG+ 
Sbjct: 236 SCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIH 286



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 17/198 (8%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---D 59
           I TY++C    D   V+  +  R+ ISWNAII+G+   G    AL+ F  M ++ +   D
Sbjct: 507 IDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESND 566

Query: 60  IDYFTITSIVGAIGVI----SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
           I +  + S+  + G++    S F   +  H      G   ++     +V +    G +ND
Sbjct: 567 ITFVALLSVCSSTGLVNHGLSLFDSMRIDH------GIKPSMEHYTCIVRLLGRAGRLND 620

Query: 116 ANKVFSSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFLVVLSAC 173
           A +    +      + W +LL  C  H     A+  F   +  EI+P D TT++++ +  
Sbjct: 621 ALQFIGDIPSAPSAMVWRALLSSCIIH--KNVALGRFSAEKILEIEPQDETTYVLLSNMY 678

Query: 174 CHAGFIDKGLQYFYLMRN 191
             AG +D+       MRN
Sbjct: 679 AAAGSLDQVALLRKSMRN 696


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 124/301 (41%), Positives = 181/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +  +   ++SS++  N++SWN II G+C  G  E AL  F EMR A +     T 
Sbjct: 395 YAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTF 454

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A    S  K   Q+H+LI K  ++++  V N L+  YA CG I DA KVF S+ E
Sbjct: 455 SSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVE 514

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VSWNS++   A HG +  A++LF++M K++IK +  TF+ +LS C   G +++GL  
Sbjct: 515 CDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWL 574

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  ++P   EHYT IV LLGRAG L +A  FI  +   P P V++ALLS+C VH
Sbjct: 575 FNSMMMDHRIKPS-MEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVH 633

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +   +A++VLD+ P+D   YVLLSN+  A    D+    R  M N G++K+ G SW
Sbjct: 634 KNVALGRYAAEKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSW 693

Query: 306 V 306
           V
Sbjct: 694 V 694



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 137/275 (49%), Gaps = 15/275 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   ++  +   + I W+ +I+ +      EQA + F  M ++ +  + F++
Sbjct: 294 YAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSL 353

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + ++ A   I+  + G+Q+H L  K+GY+S +FV N L+ MYA C  + ++ ++FSS+ +
Sbjct: 354 SGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQD 413

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            + VSWN++++G    G++ +A+ +F +M+   +     TF  VL AC +   I   +Q 
Sbjct: 414 ANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQI 473

Query: 186 FYLMR-----NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
             L+      ND  +         +++    + GF+ +A     S+      S + +++S
Sbjct: 474 HSLIEKSTFNNDTIV-------CNSLIDTYAKCGFIRDALKVFESIVECDVVS-WNSIIS 525

Query: 241 ACQVHGNREIAVRSAKRV--LDLWPNDPAIYVLLS 273
           A  +HG    A+    R+   D+  ND     LLS
Sbjct: 526 AYALHGRATNALELFDRMNKSDIKANDVTFVSLLS 560



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 92/182 (50%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS C +    + V+  +  ++ ++W A+++ +      E AL  FS+MR  G   + 
Sbjct: 190 IDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNP 249

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F +TS + A   +S    GK +H    K  YD+   V   L+ MYA CG I DA+ +F  
Sbjct: 250 FVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEM 309

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +   D++ W+ L+   A    + +A ++F +M ++ + P+  +   VL AC +  F++ G
Sbjct: 310 IPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELG 369

Query: 183 LQ 184
            Q
Sbjct: 370 EQ 371



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 89/171 (52%), Gaps = 2/171 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN++S+  ++ G+   G  E+AL+ F  +++ G ++++F +T+I+  +  +
Sbjct: 102 RRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTM 161

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                   +HA   K+G+D N FV   L+  Y++CGA+  A  VF  +  +D V+W +++
Sbjct: 162 DAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMV 221

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA--CCHAGFIDKGLQ 184
              + +     A+  F +M+ T  KP+       L A  C  +  + KG+ 
Sbjct: 222 SCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIH 272



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 112/258 (43%), Gaps = 31/258 (12%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---D 59
           I TY++C    D   V+ S+   + +SWN+II+ +   G    AL+ F  M ++ I   D
Sbjct: 493 IDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKAND 552

Query: 60  IDYFTITSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           + + ++ S+ G+ G+++   +G  + ++++       ++     +V +    G + DA K
Sbjct: 553 VTFVSLLSVCGSTGLVN---QGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALK 609

Query: 119 VFSSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFLVVLSACCHA 176
               +      + W +LL  C  H     A+  +   +  +I+P D TT++++ +    A
Sbjct: 610 FIGDIPSTPSPMVWRALLSSCVVH--KNVALGRYAAEKVLDIEPHDETTYVLLSNMYAAA 667

Query: 177 GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF-----LNEAESFINSMSRNPG 231
           G +D+   +   MRN               VG+   AG        E  +F    + +P 
Sbjct: 668 GILDEVALWRKSMRN---------------VGVKKEAGLSWVEIKGEVHAFSVGSADHPD 712

Query: 232 PSVYKALLSACQVHGNRE 249
             +  A+L    +  +RE
Sbjct: 713 MRIINAMLEWLNLKASRE 730



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 79  KEGKQMHALIFKIG--YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
           + G+ +HA + + G     + F  N L+  YA  G +  A ++F  M ER+ VS+ +L+ 
Sbjct: 62  RAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQ 121

Query: 137 GCAHHGYSREAVQLFEQMQK 156
           G A  G   EA++LF ++Q+
Sbjct: 122 GYALRGEFEEALELFRRLQR 141


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 180/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     + + V+ ++  ++ +SW A++A +   G  E+ L+ F EM + G  ++    
Sbjct: 327 YAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAF 386

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++     I+  + G Q+H  + + GY    FV N L+ MY  CG + DA   F  M+E
Sbjct: 387 ACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEE 446

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWN+++ G A HG+ +EA+++F+ M+ T  KPD  T + VL+AC H+G ++KG+ Y
Sbjct: 447 RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISY 506

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           FY M +D  +   + EHYT ++ LLGRAG L EA   +  M   P  +++ ALL A ++H
Sbjct: 507 FYSMHHDFGVT-AKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIH 565

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +A+++ +L P +  +YVLLSN+  ++  W DA  +R +M  RG++K PG+SW
Sbjct: 566 RNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSW 625

Query: 306 V 306
           +
Sbjct: 626 I 626



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%), Gaps = 8/184 (4%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           + +  Y+R    ++ + ++ +   R+  +W A+++G+   G  E+A + F  M +     
Sbjct: 229 IMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER---- 284

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           +  +  ++V A        E K+    +F +    NV   N ++  YA  G + +A  VF
Sbjct: 285 NAVSWNAMVAAYIQRRMMDEAKE----LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVF 340

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            +M ++D VSW ++L   +  G S E +QLF +M +     + + F  VLS C     ++
Sbjct: 341 DTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALE 400

Query: 181 KGLQ 184
            G+Q
Sbjct: 401 CGMQ 404



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 109/252 (43%), Gaps = 43/252 (17%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  + R     D + +++++  R+  ++NA++AG+   G    A   F  + +     D 
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRP----DN 100

Query: 63  FTITSIVGAIGVISGFKEGKQM---------------------HALI------FKIGYDS 95
           ++  +++ A+ V S   + + +                     H L+      F +  + 
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEK 160

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           +    N ++  Y   G + +A  +F+S  E D++SWN+L+ G    G   EA +LF++M 
Sbjct: 161 DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP 220

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR-AEHYTAIVGLLGRAG 214
             ++     ++ +++S     G + +  + F     DA+  P R    +TA+V    + G
Sbjct: 221 GRDV----VSWNIMVSGYARRGDMVEARRLF-----DAA--PVRDVFTWTAVVSGYAQNG 269

Query: 215 FLNEAESFINSM 226
            L EA    ++M
Sbjct: 270 MLEEARRVFDAM 281


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 110/289 (38%), Positives = 176/289 (60%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  ++ +N +SW  +I+G    G GE+ LK FS M++ G +   +  +  + +  V+  
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           +  G+Q HA + KIG+DS++   N L+ MYA CG + +A +VF +M   D VSWN+L+  
Sbjct: 433 YCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAA 492

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
              HG+  EAV ++E+M K  I+PD  T L VL+AC HAG +D+G +YF  M     + P
Sbjct: 493 LGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRI-P 551

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P A+HY  ++ LL R+G  ++AES I S+   P   +++ALLS C+VHGN E+ + +A +
Sbjct: 552 PGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADK 611

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +  L P     Y+LLSN+  AT  W++   +R LM +RG++K+   SW+
Sbjct: 612 LFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWI 660



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 97/170 (57%), Gaps = 6/170 (3%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +++NA+I+G+ N G  ++AL+    M  +GI++D FT  S++ A       + GKQ+HA 
Sbjct: 252 VAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAY 311

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           + +   D +    N LV +Y  CG  ++A  +F  M  +DLVSWN+LL G    G+  EA
Sbjct: 312 VLR-REDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEA 370

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
             +F++M++  I     ++++++S     GF ++GL+ F  M+ +   EP
Sbjct: 371 KLIFKEMKEKNI----LSWMIMISGLAENGFGEEGLKLFSCMKREG-FEP 415



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 116/262 (44%), Gaps = 47/262 (17%)

Query: 20  SSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS-GF 78
           + V  R+ + +NA+I GF +   G  A+  F +M+  G   D FT  S++  + +++   
Sbjct: 106 APVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDE 165

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA----INDANKVFSSMDERD------- 127
           K+  Q HA   K G      V N LV +Y+ C +    ++ A KVF  + E+D       
Sbjct: 166 KQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTM 225

Query: 128 -------------------------LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
                                    LV++N+++ G  + G+ +EA+++  +M  + I+ D
Sbjct: 226 MTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELD 285

Query: 163 GTTFLVVLSACCHAGFIDKGLQY--FYLMRNDASLEPPRAEHY-TAIVGLLGRAGFLNEA 219
             T+  V+ AC  AG +  G Q   + L R D S       H+  ++V L  + G  +EA
Sbjct: 286 EFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSF------HFDNSLVSLYYKCGKFDEA 339

Query: 220 ESFINSMSRNPGPSVYKALLSA 241
            +    M      S + ALLS 
Sbjct: 340 RAIFEKMPAKDLVS-WNALLSG 360



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 6/170 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C    + + V+ ++   + +SWNA+IA     G G +A+  + EM + GI  D 
Sbjct: 459 ITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDR 518

Query: 63  FTITSIVGAIGVISGFKEGKQMH---ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            T+ +++ A        +G++       +++I   ++ +   RL+ +    G  +DA  V
Sbjct: 519 ITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYA--RLIDLLCRSGKFSDAESV 576

Query: 120 FSSMDERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
             S+  +     W +LL GC  HG     +   +++     + DGT  L+
Sbjct: 577 IESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLL 626


>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
          Length = 496

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 115/290 (39%), Positives = 175/290 (60%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +   +++SW A+I GF   G  ++A+ CF  M   G++ DY T+ ++V A   + 
Sbjct: 159 EVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDGVETDYITLVAVVSACAEVG 218

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G  +H L+ +   + NV V N L+ MYA CG +N A +VF S+ +R +VSWNS+++
Sbjct: 219 ALGLGMWVHRLVLRQRLERNVRVANSLIDMYARCGQVNLAAQVFRSIRKRTVVSWNSMIV 278

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A +G   +A++LFE+M++   KPD  T   VL+AC HAG  + GL+Y+ LM  +  + 
Sbjct: 279 GFAANGRCTDAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGVA 338

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
             R EHY  +V LLGRAG L+EA   + +M   P   V  ALL+ C+ HGN ++A +  +
Sbjct: 339 -ARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRTHGNLDMAEQMMQ 397

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            + +L P   A YVLLSN+  A   WD AG +R+LM  RG++K+PG+S V
Sbjct: 398 HLFELDPQGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGVKKRPGHSTV 447



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC        V+ S+R R  +SWN++I GF   G    A++ F EMR+ G   D  T+
Sbjct: 249 YARCGQVNLAAQVFRSIRKRTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPDAVTL 308

Query: 66  TSIVGAIGVISGFKEGKQMHALI-FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           T ++ A       + G + + L+  + G  + +     +V +    G +++A  V  +M 
Sbjct: 309 TGVLTACSHAGLTEHGLRYYDLMTTEYGVAARMEHYGCVVDLLGRAGRLDEAMHVVETMP 368

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            R + V   +LL GC  HG    A Q+ + +   E+ P G    V+LS
Sbjct: 369 MRPNEVVLGALLAGCRTHGNLDMAEQMMQHL--FELDPQGDANYVLLS 414



 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 37/73 (50%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G ++ A +VF  M   D VSW +L+ G   +G   EA+  F  M    ++ D  T + V+
Sbjct: 152 GLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDGVETDYITLVAVV 211

Query: 171 SACCHAGFIDKGL 183
           SAC   G +  G+
Sbjct: 212 SACAEVGALGLGM 224


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 114/294 (38%), Positives = 181/294 (61%), Gaps = 2/294 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA-I 72
           D   V+  + T++ I+W+A++AG+   G  E+A K F ++ + GI  + FT  SI+ A  
Sbjct: 455 DAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACT 514

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
              +  ++GKQ HA   K+  ++ + V + LV +YA  G I  A+++F    ERDLVSWN
Sbjct: 515 APTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWN 574

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           S++ G A HG +++A+++FE+MQK  ++ D  TF+ V+SAC HAG + KG  YF +M ND
Sbjct: 575 SMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMIND 634

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
             + P   EHY+ ++ L  RAG L +A   IN M   P  +V++ +L+A +VH N E+  
Sbjct: 635 HHINPT-MEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGK 693

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +A++++ L P   A YVLLSN+  A   W +  ++R LM  R ++K+PGYSW+
Sbjct: 694 LAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWI 747



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 2/247 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  +  D + V+  +  R+ +SWN+++ G+      +Q  + F  M+  G   DY+T+
Sbjct: 147 YTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTV 206

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++ A+        G Q+HAL+ K+G+++   V N L+ M +  G + DA  VF +M+ 
Sbjct: 207 STVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMEN 266

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D VSWNS++ G   +G   EA + F  MQ    KP   TF  V+ +C  A   + GL  
Sbjct: 267 KDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSC--ASLKELGLVR 324

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
               +   S         TA++  L +   +++A S  + M        + A++S    +
Sbjct: 325 VLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQN 384

Query: 246 GNREIAV 252
           G+ + AV
Sbjct: 385 GDTDQAV 391



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 105/185 (56%), Gaps = 6/185 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           ++  ++C    D  +++S +   ++ +SW A+I+G+   G  +QA+  FS MR+ G+  +
Sbjct: 346 MVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPN 405

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           +FT ++I+     +       ++HA + K  Y+ +  V   L+  +   G I+DA KVF 
Sbjct: 406 HFTYSTILTVQHAVFI----SEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFE 461

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-CHAGFID 180
            ++ +D+++W+++L G A  G + EA ++F Q+ +  IKP+  TF  +++AC      ++
Sbjct: 462 LIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVE 521

Query: 181 KGLQY 185
           +G Q+
Sbjct: 522 QGKQF 526



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 2/211 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++     R+    N ++  +      ++AL  F  + ++G+  D +T++ ++      
Sbjct: 56  QQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGS 115

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+H    K G   ++ V N LV MY   G + D  +VF  M +RD+VSWNSLL
Sbjct: 116 FNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLL 175

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G + + ++ +  +LF  MQ    +PD  T   V++A  + G +  G+Q   L+      
Sbjct: 176 TGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVK-LGF 234

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           E  R     +++ +L ++G L +A    ++M
Sbjct: 235 ETERLV-CNSLISMLSKSGMLRDARVVFDNM 264


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 184/301 (61%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC    +   V+  +  +N++SWNA+IAG+   G GE+AL  F  M++ G     FT 
Sbjct: 220 YARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTY 279

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++ +   +   ++GK +HA + K       +V N L+ MYA  G+I DA KVF  + +
Sbjct: 280 SALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVK 339

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VS NS+L+G A HG  +EA Q F++M +  I+P+  TFL VL+AC HA  +D+G  Y
Sbjct: 340 VDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHY 399

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LMR   ++E P+  HY  IV LLGRAG L++A+SFI  M   P  +++ ALL A ++H
Sbjct: 400 FGLMRK-YNIE-PKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMH 457

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +A+RV +L P+ P  + LL+N+  +   W+D   +R +M + G++K+P  SW
Sbjct: 458 KNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSW 517

Query: 306 V 306
           V
Sbjct: 518 V 518



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 140/278 (50%), Gaps = 5/278 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y+RC S    + ++  +  R+ +SW ++I G+        AL  F  M   G + + 
Sbjct: 116 LFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNE 175

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT++S+V   G ++ +  G+Q+HA  +K G  SNVFV + LV MYA CG + +A  VF  
Sbjct: 176 FTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDK 235

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  ++ VSWN+L+ G A  G   EA+ LF +MQ+   +P   T+  +LS+C   G +++G
Sbjct: 236 LGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQG 295

Query: 183 -LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
              + +LM++   L          ++ +  ++G + +AE   + + +    S    L+  
Sbjct: 296 KWLHAHLMKSSQKLVGYVG---NTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGY 352

Query: 242 CQVHGNREIAVRSAKRV-LDLWPNDPAIYVLLSNVSKA 278
            Q    +E A +  + +   + PND     +L+  S A
Sbjct: 353 AQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHA 390



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 48/215 (22%)

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +   KEGK +H  +    +  ++ +QN L+FMYA CG++  A ++F  M  RD+VSW S+
Sbjct: 87  LGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSM 146

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--------------------C 174
           + G A +  + +A+ LF +M     +P+  T   ++  C                    C
Sbjct: 147 ITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGC 206

Query: 175 HA---------------GFIDKGLQYFYLM--RNDASLEPPRAEHYTAIVGLLGRAGFLN 217
           H+               G++ + +  F  +  +N+ S        + A++    R G   
Sbjct: 207 HSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVS--------WNALIAGYARKGEGE 258

Query: 218 EAESFINSMSRN---PGPSVYKALLSACQVHGNRE 249
           EA +    M R    P    Y ALLS+C   G  E
Sbjct: 259 EALALFVRMQREGYRPTEFTYSALLSSCSSMGCLE 293


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 110/289 (38%), Positives = 177/289 (61%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ S+  ++ +SW ++I+ + + G   +AL+ FS M++ G++ DY T+ SI+ A+  +S 
Sbjct: 418 IFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLST 477

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K+GK++H  I + G+     + N LV MYA CG++ DA K+F+    R+L+ W +++  
Sbjct: 478 LKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISA 537

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
              HGY   AV+LF +M+  +I PD  TFL +L AC H+G +++G  +  +M+ +  LE 
Sbjct: 538 YGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLE- 596

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P  EHYT +V LLGR   L EA   + SM   P P V+ ALL AC++H N+EI   +A++
Sbjct: 597 PWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEK 656

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +L+L  ++P  YVL+SNV  A   W D  ++R  M   G+ K PG SW+
Sbjct: 657 LLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWI 705



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 117/216 (54%), Gaps = 5/216 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S LD + ++  +  R+  +WNA++ G+ + G    AL+ + EMR  G+  D +T 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A G++     G ++H L  K G DS VFV N LV +YA C  IN A K+F  M  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 126 R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           R D+VSWNS++   + +G   EA+ LF +M K  +  +  TF   L AC  + FI  G+Q
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
            +  ++++   L+   A    A+V +  R G + EA
Sbjct: 182 IHAAILKSGRVLDVYVA---NALVAMYVRFGKMPEA 214



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 107/191 (56%), Gaps = 2/191 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQI-SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           +  Y++C+     + ++  +  RN + SWN+II+ +   G   +AL  FSEM +AG+  +
Sbjct: 100 VALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTN 159

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +T  + + A    S  K G Q+HA I K G   +V+V N LV MY   G + +A  +F 
Sbjct: 160 TYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFG 219

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           +++ +D+V+WNS+L G   +G   EA++ F  +Q  ++KPD  + + ++ A    G++  
Sbjct: 220 NLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLN 279

Query: 182 GLQ-YFYLMRN 191
           G + + Y ++N
Sbjct: 280 GKEIHAYAIKN 290



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 136/257 (52%), Gaps = 8/257 (3%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           ++ ISW    AG+       QAL+   +++  G+D+D   I SI+ A   ++   + K++
Sbjct: 325 KDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEI 384

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H    + G  S+  +QN ++ +Y  CG I+ A ++F S++ +D+VSW S++    H+G +
Sbjct: 385 HGYTIRGGL-SDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLA 443

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHY 203
            +A+++F  M++T ++PD  T + +LSA C    + KG + + +++R    LE   +   
Sbjct: 444 NKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSIS--- 500

Query: 204 TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD--L 261
             +V +  R G + +A   I + ++N    ++ A++SA  +HG  E AV    R+ D  +
Sbjct: 501 NTLVDMYARCGSVEDAYK-IFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKI 559

Query: 262 WPNDPAIYVLLSNVSKA 278
            P+      LL   S +
Sbjct: 560 IPDHITFLALLYACSHS 576



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 131/262 (50%), Gaps = 10/262 (3%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ ++  ++ ++WN+++ GF   G   +AL+ F +++ A +  D  +I SI+ A G +  
Sbjct: 217 IFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGY 276

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              GK++HA   K G+DSN+ V N L+ MYA C  ++   + F  M  +DL+SW +   G
Sbjct: 277 LLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAG 336

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLE 196
            A +    +A++L  Q+Q   +  D T    +L AC     + K  + + Y +R    L 
Sbjct: 337 YAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIR--GGLS 394

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH---GNREIAVR 253
            P  ++   I+ + G  G ++ A     S+      S + +++S C VH    N+ + V 
Sbjct: 395 DPVLQN--TIIDVYGECGIIDYAVRIFESIECKDVVS-WTSMIS-CYVHNGLANKALEVF 450

Query: 254 SAKRVLDLWPNDPAIYVLLSNV 275
           S+ +   L P+   +  +LS V
Sbjct: 451 SSMKETGLEPDYVTLVSILSAV 472



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 41/68 (60%)

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
           MY  CG++ DA  +F  M ER + +WN+++ G   +G +  A++++ +M+   +  D  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 166 FLVVLSAC 173
           F V+L AC
Sbjct: 61  FPVLLKAC 68



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 4/166 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC S  D   +++  + RN I W A+I+ +   G GE A++ F  M+   I  D+ T 
Sbjct: 507 YARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITF 566

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVFSSM 123
            +++ A        EGK     I K  Y    + ++   LV +      + +A ++  SM
Sbjct: 567 LALLYACSHSGLVNEGKSFLE-IMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSM 625

Query: 124 -DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
            +E     W +LL  C  H          E++ + ++   G   LV
Sbjct: 626 QNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLV 671


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 180/279 (64%), Gaps = 1/279 (0%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SW+++++G+   G  E ALK FS M  + +++D FT+TS+V A       + G+Q+H  
Sbjct: 602 VSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGY 661

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           I KIG+  +VF+ + ++ MY  CG++NDA  +F+   +R++V W S++ GCA HG  REA
Sbjct: 662 IQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREA 721

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           V+LFE M    I P+  +F+ VL+AC HAG +++G +YF LMR    + P  AEH+T +V
Sbjct: 722 VRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPG-AEHFTCMV 780

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267
            L GRAG LNE + FI++ + +   SV+++ LS+C+VH N E+ +   K++L+L P D  
Sbjct: 781 DLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAG 840

Query: 268 IYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            Y+L S++      W++A  IR+LM  RG++K P  SW+
Sbjct: 841 PYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWI 879



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 143/304 (47%), Gaps = 24/304 (7%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +++  +  ++  SWN +I G    G    AL+   +M  AG   +  T +  +     +S
Sbjct: 475 DLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLS 534

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER---------- 126
               GKQ+H  + K+G   + FV+N L+ MY  CG +  A+ +F  + +           
Sbjct: 535 VLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESC 594

Query: 127 -----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
                + VSW+S++ G   +G   +A++ F  M  ++++ D  T   V+SAC  AG ++ 
Sbjct: 595 DDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLEL 654

Query: 182 GLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           G Q + Y+ +    L+       ++I+ +  + G LN+A    N  +++    ++ +++S
Sbjct: 655 GRQVHGYIQKIGHGLDVFLG---SSIIDMYVKCGSLNDAWLIFNQ-AKDRNVVLWTSMIS 710

Query: 241 ACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
            C +HG    AVR  + +++  + PN+ +   +L+  S A    +     R +    GIR
Sbjct: 711 GCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIR 770

Query: 299 KKPG 302
             PG
Sbjct: 771 --PG 772



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 1/150 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  +      ++  +   +  SW  +I+GF  +G     L  F++M+  G+  + FT+
Sbjct: 331 YAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTL 390

Query: 66  TSIVGAIGV-ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + ++ +    ++  + GK +H  I + G D +  + N ++  Y  C     A K+F  M 
Sbjct: 391 SIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMA 450

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
           E+D VSWN ++      G  +++V LF Q+
Sbjct: 451 EKDTVSWNIMMSSYLQIGDMQKSVDLFRQL 480



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 4/99 (4%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
           N L+ +YA    +  A+K+F  + + D+ SW  L+ G A  G S + + LF +MQ   + 
Sbjct: 325 NHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVC 384

Query: 161 PDGTTFLVVLSAC---CHAGFIDKGLQYFYLMRNDASLE 196
           P+  T  +VL +C    +   I KG+ + +++RN   L+
Sbjct: 385 PNQFTLSIVLKSCSSNVNDSRIGKGI-HGWILRNGLDLD 422



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 5/171 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D   +++  + RN + W ++I+G    G G +A++ F  M   GI  +  + 
Sbjct: 681 YVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSF 740

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A       +EG +   L+ ++ G          +V +Y   G +N+  +   +  
Sbjct: 741 VGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNA 800

Query: 125 ERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFLVVLSAC 173
              L S W S L  C  H      + + +++   E++P D   +++  S C
Sbjct: 801 ISKLSSVWRSFLSSCRVHKNIEMGIWVCKKL--LELEPFDAGPYILFSSIC 849


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 176/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C      + V+S + TRN +SWN +IAG+   G   +  +  S M+  G   D 
Sbjct: 459 LTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDR 518

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            TI SI+ A G +S  + GK +HA   K+G +S+  V   L+ MY+ CG + +A  VF  
Sbjct: 519 VTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDK 578

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  RD V+WN++L G   HG   EAV LF++M K  + P+  TF  V+SAC  AG + +G
Sbjct: 579 ISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEG 638

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + F +M+ D  ++P + +HY  +V LLGRAG L EAE FI  M   P  SV+ ALL AC
Sbjct: 639 REIFRIMQEDFRMKPGK-QHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGAC 697

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + H N ++A  +A  +L L P++ ++YV LSN+      WDD+  +R +M ++G++K  G
Sbjct: 698 KSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRG 757

Query: 303 YSWV 306
            S +
Sbjct: 758 ESSI 761



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 8/243 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C        ++  ++ RN +SW AII          +A + + +M QAGI  + 
Sbjct: 221 ITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNA 280

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S++ +         G+++H+ I + G +++V V N L+ MY  C  I DA + F  
Sbjct: 281 VTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDR 340

Query: 123 MDERDLVSWNSLLLGCAHHGYS-----REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           M +RD++SW++++ G A  GY       E  QL E+M++  + P+  TF+ +L AC   G
Sbjct: 341 MSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHG 400

Query: 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
            +++G Q  +   +    E  R+   TAI  +  + G + EAE   + M  N     + +
Sbjct: 401 ALEQGRQ-IHAEISKVGFESDRSLQ-TAIFNMYAKCGSIYEAEQVFSKME-NKNVVAWAS 457

Query: 238 LLS 240
           LL+
Sbjct: 458 LLT 460



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 150/338 (44%), Gaps = 43/338 (12%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLG-----SGEQALKCFSEMRQAG 57
           I  Y +C+   D +  +  +  R+ ISW+A+IAG+   G     S ++  +    MR+ G
Sbjct: 322 ITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREG 381

Query: 58  IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI---- 113
           +  +  T  SI+ A  V    ++G+Q+HA I K+G++S+  +Q  +  MYA CG+I    
Sbjct: 382 VFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAE 441

Query: 114 ---------------------------NDANKVFSSMDERDLVSWNSLLLGCAHHGYSRE 146
                                        A KVFS M  R++VSWN ++ G A  G   +
Sbjct: 442 QVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAK 501

Query: 147 AVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAI 206
             +L   M+    +PD  T + +L AC     +++G +  +       LE       T++
Sbjct: 502 VFELLSSMKVEGFQPDRVTIISILEACGALSALERG-KLVHAEAVKLGLESDTVV-ATSL 559

Query: 207 VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPN 264
           +G+  + G + EA +  + +S N     + A+L+    HG    AV   KR+L   + PN
Sbjct: 560 IGMYSKCGEVTEARTVFDKIS-NRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPN 618

Query: 265 DPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +     ++S   +A    +     R +  +   R KPG
Sbjct: 619 EITFTAVISACGRAGLVQEGREIFRIMQED--FRMKPG 654



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 132/281 (46%), Gaps = 37/281 (13%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+       + V+  +  R+ ++W+++IA +       +A   F  M+ A I+ +  T 
Sbjct: 123 YSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITF 182

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A    S  ++ +++H ++   G +++V V   L+ MY+ CG I+ A ++F  M E
Sbjct: 183 LSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKE 242

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----------C 174
           R++VSW +++   A H    EA +L+E+M +  I P+  TF+ +L++C            
Sbjct: 243 RNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRI 302

Query: 175 HAGFIDKGLQYFYLMRN-------------DASLEPPRAEH-----YTAIVGLLGRAGF- 215
           H+   ++GL+   ++ N             DA     R        ++A++    ++G+ 
Sbjct: 303 HSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQ 362

Query: 216 ----LNEAESFINSMSRN---PGPSVYKALLSACQVHGNRE 249
               L+E    +  M R    P    + ++L AC VHG  E
Sbjct: 363 DKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALE 403



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 123/263 (46%), Gaps = 6/263 (2%)

Query: 37  FCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN 96
            C  G  ++A++    ++Q G+ ++  T   I+     +  F++GK +H  + ++G   +
Sbjct: 53  LCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAID 112

Query: 97  VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
           +++ N L+  Y+  G +    +VF  M  RD+V+W+S++   A + +  +A   FE+M+ 
Sbjct: 113 IYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKD 172

Query: 157 TEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFL 216
             I+P+  TFL +L AC +   ++K  +   +++  AS         TA++ +  + G +
Sbjct: 173 ANIEPNRITFLSILKACNNYSMLEKAREIHTVVK--ASGMETDVAVATALITMYSKCGEI 230

Query: 217 NEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSN 274
           + A      M      S + A++ A   H     A    +++L   + PN    +V L N
Sbjct: 231 SLACEIFQKMKERNVVS-WTAIIQANAQHRKLNEAFELYEKMLQAGISPN-AVTFVSLLN 288

Query: 275 VSKATDCWDDAGDIRTLMYNRGI 297
                +  +    I + +  RG+
Sbjct: 289 SCNTPEALNRGRRIHSHISERGL 311


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 113/291 (38%), Positives = 174/291 (59%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +N++  +  R+ +SW AIIAG+   G  E+A+    EM++ G  ++  T    + A   I
Sbjct: 332 RNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADI 391

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  + GKQ+H  + + GY+    V N LV MY  CG I++A  VF  +  +D+VSWN++L
Sbjct: 392 AALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTML 451

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG+ R+A+ +FE M    +KPD  T + VLSAC H G  D+G +YF+ M  D  +
Sbjct: 452 AGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGI 511

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
             P ++HY  ++ LLGRAG L EA++ I +M   P  + + ALL A ++HGN E+  ++A
Sbjct: 512 -TPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAA 570

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + V  + P++  +YVLLSN+  A+  W D   +R  M   G++K PGYSWV
Sbjct: 571 EMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWV 621



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 31/198 (15%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +  R+ ISWN +I+G+   G   QA + F E        D FT T++V A  
Sbjct: 206 DARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVR----DVFTWTAMVYAYV 261

Query: 74  -------------------------VISGFKEGKQMHA--LIFKIGYDSNVFVQNRLVFM 106
                                    +I+G+ + K+M     +F+     N+   N ++  
Sbjct: 262 QDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISG 321

Query: 107 YAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
           Y   G +  A  +F  M +RD VSW +++ G A +G   EA+ +  +M++     + +TF
Sbjct: 322 YCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTF 381

Query: 167 LVVLSACCHAGFIDKGLQ 184
              LSAC     ++ G Q
Sbjct: 382 CCALSACADIAALELGKQ 399



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    +  +V+  V+ ++ +SWN ++AG+   G G QAL  F  M  AG+  D  T+
Sbjct: 423 YCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITM 482

Query: 66  TSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A         G +  H++    G   N      ++ +    G + +A  +  +M 
Sbjct: 483 VGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMP 542

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            E D  +W +LL     HG      Q  E + K E  P  +   V+LS
Sbjct: 543 FEPDAATWGALLGASRIHGNMELGEQAAEMVFKME--PHNSGMYVLLS 588



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           L +  Y+R     D + ++ S+  ++ +SWNA+++G+   G  ++A   F  M       
Sbjct: 100 LMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHK---- 155

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           +  +   ++ A       +E ++    +F+   D  +   N L+  Y     + DA ++F
Sbjct: 156 NSISWNGLLAAYVRSGRLEEARR----LFESKSDWELISCNCLMGGYVKRNMLGDARQLF 211

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             +  RDL+SWN+++ G A  G   +A +LFE+    ++     T+  ++ A    G +D
Sbjct: 212 DQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV----FTWTAMVYAYVQDGMLD 267

Query: 181 KGLQYF 186
           +  + F
Sbjct: 268 EARRVF 273



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 116/283 (40%), Gaps = 56/283 (19%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R     + ++V+  +  +N ISWN ++A +   G  E+A + F    ++  D +  + 
Sbjct: 136 YVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLF----ESKSDWELISC 191

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++G     +   + +Q    +F      ++   N ++  YA  G ++ A ++F     
Sbjct: 192 NCLMGGYVKRNMLGDARQ----LFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPV 247

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIK------------------------ 160
           RD+ +W +++      G   EA ++F++M QK E+                         
Sbjct: 248 RDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEM 307

Query: 161 --PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218
             P+  ++ +++S  C  G + +    F +M    S+       + AI+    + G   E
Sbjct: 308 PFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVS------WAAIIAGYAQNGLYEE 361

Query: 219 AESFINSMSRNPGPSVYKAL----LSAC----------QVHGN 247
           A + +  M R+ G S+ ++     LSAC          QVHG 
Sbjct: 362 AMNMLVEMKRD-GESLNRSTFCCALSACADIAALELGKQVHGQ 403



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 15/153 (9%)

Query: 9   CDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           CD +L    V+ ++  RN +S+NA+I+G+        A   F +M       D F+   +
Sbjct: 49  CDLAL---CVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHK----DLFSWNLM 101

Query: 69  VGAIGVISGFKEGKQMH--ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
                 ++G+   +++    ++F    + +V   N ++  Y   G +++A  VF  M  +
Sbjct: 102 ------LTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHK 155

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
           + +SWN LL      G   EA +LFE     E+
Sbjct: 156 NSISWNGLLAAYVRSGRLEEARRLFESKSDWEL 188



 Score = 43.9 bits (102), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 10/112 (8%)

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
           A  +F  M  +DL SWN +L G A +   R+A  LF+ M + ++     ++  +LS    
Sbjct: 83  ARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDV----VSWNAMLSGYVR 138

Query: 176 AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
           +G +D+    F  M +  S+       +  ++    R+G L EA     S S
Sbjct: 139 SGHVDEARDVFDRMPHKNSIS------WNGLLAAYVRSGRLEEARRLFESKS 184


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 179/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+       ++SS+R  N++SWN I+ GF   G GE+AL  F EM+ A +     T 
Sbjct: 409 YAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTY 468

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A    +  +   Q+H  I K  ++++  + N L+  YA CG I DA KVF  + E
Sbjct: 469 SSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLME 528

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD++SWN+++ G A HG + +A++LF++M K+ ++ +  TF+ +LS C   G ++ GL  
Sbjct: 529 RDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSL 588

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  MR D  ++P   EHYT IV LLGRAG LN+A  FI  +   P   V++ALLS+C +H
Sbjct: 589 FDSMRIDHGIKPS-MEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIH 647

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +   SA+++L++ P D   YVLLSN+  A    D    +R  M N G+RK PG SW
Sbjct: 648 KNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSW 707

Query: 306 V 306
           V
Sbjct: 708 V 708



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 137/280 (48%), Gaps = 19/280 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D +  +  +   + I  + +I+ +      EQA + F  + ++ +  + +++
Sbjct: 308 YAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSL 367

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   +     GKQ+H    KIG++S++FV N L+  YA C  ++ + K+FSS+ +
Sbjct: 368 SSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRD 427

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC------HAGFI 179
            + VSWN++++G +  G   EA+ +F +MQ  ++     T+  VL AC       HAG I
Sbjct: 428 ANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQI 487

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKAL 238
              ++      ND  +         +++    + G++ +A + F + M R+     + A+
Sbjct: 488 HCSIEK-STFNNDTVIG-------NSLIDTYAKCGYIRDALKVFQHLMERD--IISWNAI 537

Query: 239 LSACQVHGNREIAVRSAKRV--LDLWPNDPAIYVLLSNVS 276
           +S   +HG    A+    R+   ++  ND     LLS  S
Sbjct: 538 ISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCS 577



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 89/182 (48%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS C    D ++V++ +  ++ + W A+++ +      E A + FS+MR +G   + 
Sbjct: 204 IDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNP 263

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F +TS++ A   +     GK +H    K   D+   V   L+ MYA CG I DA   F  
Sbjct: 264 FALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEM 323

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +   D++  + ++   A    + +A +LF ++ ++ + P+  +   VL AC +   +D G
Sbjct: 324 IPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFG 383

Query: 183 LQ 184
            Q
Sbjct: 384 KQ 385



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 84/171 (49%), Gaps = 2/171 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN +S+  ++      G  E A   F  +R  G +++ F +T+++     +
Sbjct: 116 RRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAM 175

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                   +H+  +K+G+D N FV + L+  Y++C  ++DA  VF+ +  +D V W +++
Sbjct: 176 DAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMV 235

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA--CCHAGFIDKGLQ 184
              + +     A ++F +M+ +  KP+      VL A  C  +  + KG+ 
Sbjct: 236 SCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIH 286



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 11/202 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---D 59
           I TY++C    D   V+  +  R+ ISWNAII+G+   G    AL+ F  M ++ +   D
Sbjct: 507 IDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESND 566

Query: 60  IDYFTITSIVGAIGVIS-GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           I +  + S+  + G+++ G      M       G   ++     +V +    G +NDA +
Sbjct: 567 ITFVALLSVCSSTGLVNHGLSLFDSMR---IDHGIKPSMEHYTCIVRLLGRAGRLNDALQ 623

Query: 119 VFSSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFLVVLSACCHA 176
               +      + W +LL  C  H     A+  F   +  EI+P D TT++++ +    A
Sbjct: 624 FIGDIPSAPSAMVWRALLSSCIIH--KNVALGRFSAEKILEIEPQDETTYVLLSNMYAAA 681

Query: 177 GFIDKGLQYFYLMRNDASLEPP 198
           G +D+       MRN    + P
Sbjct: 682 GSLDQVALLRKSMRNIGVRKVP 703


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 180/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     + + V+ ++  ++ +SW A++A +   G  E+ L+ F EM + G  ++    
Sbjct: 327 YAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAF 386

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++     I+  + G Q+H  + + GY    FV N L+ MY  CG + DA   F  M+E
Sbjct: 387 ACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEE 446

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWN+++ G A HG+ +EA+++F+ M+ T  KPD  T + VL+AC H+G ++KG+ Y
Sbjct: 447 RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISY 506

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           FY M +D  +   + EHYT ++ LLGRAG L EA   +  M   P  +++ ALL A ++H
Sbjct: 507 FYSMHHDFGVT-AKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIH 565

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +A+++ +L P +  +YVLLSN+  ++  W DA  +R +M  RG++K PG+SW
Sbjct: 566 RNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSW 625

Query: 306 V 306
           +
Sbjct: 626 I 626



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%), Gaps = 8/184 (4%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           + +  Y+R    ++ + ++ +   R+  +W A+++G+   G  E+A + F  M +     
Sbjct: 229 IMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER---- 284

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           +  +  ++V A        E K+    +F +    NV   N ++  YA  G + +A  VF
Sbjct: 285 NAVSWNAMVAAYIQRRMMDEAKE----LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVF 340

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            +M ++D VSW ++L   +  G S E +QLF +M +     + + F  VLS C     ++
Sbjct: 341 DTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALE 400

Query: 181 KGLQ 184
            G+Q
Sbjct: 401 CGMQ 404



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 109/252 (43%), Gaps = 43/252 (17%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  + R     D + +++++  R+  ++NA++AG+   G    A   F  + +     D 
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRP----DN 100

Query: 63  FTITSIVGAIGVISGFKEGKQM---------------------HALI------FKIGYDS 95
           ++  +++ A+ V S   + + +                     H L+      F +  + 
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEK 160

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           +    N ++  Y   G + +A  +F+S  E D++SWN+L+ G    G   EA +LF++M 
Sbjct: 161 DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP 220

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR-AEHYTAIVGLLGRAG 214
             ++     ++ +++S     G + +  + F     DA+  P R    +TA+V    + G
Sbjct: 221 GRDV----VSWNIMVSGYARRGDMVEARRLF-----DAA--PVRDVFTWTAVVSGYAQNG 269

Query: 215 FLNEAESFINSM 226
            L EA    ++M
Sbjct: 270 MLEEARRVFDAM 281


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 115/294 (39%), Positives = 179/294 (60%), Gaps = 4/294 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFTITSIVGAIGV 74
           + +++ +  +N ISW  +I G    G  E+ALK FS M    G   +  T  S++GA   
Sbjct: 269 RKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSN 328

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS--MDERDLVSWN 132
           ++G  EG+Q+H +I K  Y  + FV + L+ MY+ CG +  A K+F      +RDLVSWN
Sbjct: 329 LAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWN 388

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
            ++   AHHGY +EA+  F++M+K+  KPD  T++ +LSAC HAG +++GL+YF  +  D
Sbjct: 389 GIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKD 448

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            S+   R +HY  +V L GRAG L EA  FI  +   P   V+ ALL+ C VH N +I  
Sbjct: 449 RSI-LVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGK 507

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++AK++L++ P +   Y+LLSN+  +T  W +A  +R  M ++G++K+PG SW+
Sbjct: 508 QAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWI 561



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 132/296 (44%), Gaps = 26/296 (8%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R +   D + +++ +  +N +SWN +I G+   G  + A+  F +M +  + + + T+
Sbjct: 140 YIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNV-VSWNTV 198

Query: 66  TSIVGAIGVISGFKE------------------GKQMHAL-IFKIGYDSNVFVQNRLVFM 106
            S++   G I   +                   G    AL +F+   + ++   N ++  
Sbjct: 199 MSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLDEALDLFERMPERDLPSWNTMITG 258

Query: 107 YAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTT 165
               G +  A K+F+ M +++++SW +++ GC   G S EA+++F +M  T   KP+  T
Sbjct: 259 LIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGT 318

Query: 166 FLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES-FIN 224
           F+ VL AC +   + +G Q   ++      +       +A++ +  + G L  A   F +
Sbjct: 319 FVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFV--VSALINMYSKCGELGTARKMFDD 376

Query: 225 SMSRNPGPSVYKALLSACQVHGNREIAVRSAK--RVLDLWPNDPAIYVLLSNVSKA 278
            M+       +  +++A   HG  + A+   K  R     P+D     LLS  S A
Sbjct: 377 GMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHA 432



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 115/259 (44%), Gaps = 27/259 (10%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I   S+    ++ + ++  +R  + I+W  +I+G+   G  E+A + F  +       + 
Sbjct: 74  ITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKK---NV 130

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T T++VG     +   + +++    F    + NV   N ++  YA  G I+ A  +F  
Sbjct: 131 VTWTAMVGGYIRSNKISDAEKL----FNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEK 186

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER++VSWN+++   A  G   EA +LF++M + +         V+      AG +D+ 
Sbjct: 187 MPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERD---------VISWTAMIAGLLDEA 237

Query: 183 LQYFYLMRNDASLEPPR--AEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           L  F  M       P R      T I GL+ + G L  A    N M +    S +  +++
Sbjct: 238 LDLFERM-------PERDLPSWNTMITGLI-QNGDLRRARKLFNEMPKKNVIS-WTTMIT 288

Query: 241 ACQVHGNREIAVRSAKRVL 259
            C   G  E A++   R+L
Sbjct: 289 GCVQEGESEEALKIFSRML 307


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 180/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     + + V+ ++  ++ +SW A++A +   G  E+ L+ F EM + G  ++    
Sbjct: 327 YAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAF 386

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++     I+  + G Q+H  + + GY    FV N L+ MY  CG + DA   F  M+E
Sbjct: 387 ACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEE 446

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWN+++ G A HG+ +EA+++F+ M+ T  KPD  T + VL+AC H+G ++KG+ Y
Sbjct: 447 RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISY 506

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           FY M +D  +   + EHYT ++ LLGRAG L EA   +  M   P  +++ ALL A ++H
Sbjct: 507 FYSMHHDFGVT-AKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIH 565

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +A+++ +L P +  +YVLLSN+  ++  W DA  +R +M  RG++K PG+SW
Sbjct: 566 RNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSW 625

Query: 306 V 306
           +
Sbjct: 626 I 626



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%), Gaps = 8/184 (4%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           + +  Y+R    ++ + ++ +   R+  +W A+++G+   G  E+A + F  M +     
Sbjct: 229 IMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER---- 284

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           +  +  ++V A        E K+    +F +    NV   N ++  YA  G + +A  VF
Sbjct: 285 NAVSWNAMVAAYIQRRMMDEAKE----LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVF 340

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            +M ++D VSW ++L   +  G S E +QLF +M +     + + F  VLS C     ++
Sbjct: 341 DTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALE 400

Query: 181 KGLQ 184
            G+Q
Sbjct: 401 CGMQ 404



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 108/252 (42%), Gaps = 43/252 (17%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  + R     D + +++++  R+  ++NA++AG+   G    A   F  + +     D 
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRP----DN 100

Query: 63  FTITSIVGAIGVISGFKEGKQM---------------------HALI------FKIGYDS 95
           ++  +++ A+ V S   + + +                     H L+      F +  + 
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEK 160

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           +    N ++  Y   G + +A  +F+S  E D +SWN+L+ G    G   EA +LF++M 
Sbjct: 161 DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMP 220

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR-AEHYTAIVGLLGRAG 214
             ++     ++ +++S     G + +  + F     DA+  P R    +TA+V    + G
Sbjct: 221 GRDV----VSWNIMVSGYARRGDMVEARRLF-----DAA--PVRDVFTWTAVVSGYAQNG 269

Query: 215 FLNEAESFINSM 226
            L EA    ++M
Sbjct: 270 MLEEARRVFDAM 281


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 181/301 (60%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC        V+  + ++N +SWNA+I+GF   G GE AL  F+EM + G +  +FT 
Sbjct: 197 YARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTY 256

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S+  +I  +   ++GK +HA + K       F  N L+ MYA  G++ DA KVF  +D+
Sbjct: 257 SSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDD 316

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +DLV+WN++L   A +G  +EAV  FE+M+K+ I  +  TFL +L+AC H G + +G +Y
Sbjct: 317 KDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRY 376

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M+ +  LE P  +H+  +V LLGRAG LN A  FI  M   P  +V+ ALL+AC++H
Sbjct: 377 FEMMK-EYDLE-PEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMH 434

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++   +A  V +L P+D    VLL N+  +T  WD A  +R +M   G++K+P  SW
Sbjct: 435 KNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSW 494

Query: 306 V 306
           V
Sbjct: 495 V 495



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 95/180 (52%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S L+ + V+  +R ++ +SW ++IAG+      E+A+     M +     + 
Sbjct: 93  IHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNG 152

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++ A G  +    G+Q+HAL  K  +  +V+V + L+ MYA CG ++ A  VF  
Sbjct: 153 FTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDK 212

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +D ++ VSWN+L+ G A  G    A+  F +M +   +    T+  V S+    G +++G
Sbjct: 213 LDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQG 272



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 15/199 (7%)

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
           + + A       ++ +++HA +    +  + F+ N L+ +Y  CG++ +A KVF  M  +
Sbjct: 56  TFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRK 115

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-CHAGFIDKGLQY 185
           D+VSW SL+ G A +    EA+ L   M K   KP+G TF  +L A   HA   D G+  
Sbjct: 116 DMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHA---DSGIG- 171

Query: 186 FYLMRNDASLEPPRAEHYTAIVG-----LLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
               R   +L      H    VG     +  R G ++ A +  + +    G S + AL+S
Sbjct: 172 ----RQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVS-WNALIS 226

Query: 241 ACQVHGNREIAVRSAKRVL 259
                G+ E A+ +   +L
Sbjct: 227 GFARKGDGETALMTFAEML 245


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 115/294 (39%), Positives = 179/294 (60%), Gaps = 4/294 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFTITSIVGAIGV 74
           + +++ +  +N ISW  +I G    G  E+ALK FS M    G   +  T  S++GA   
Sbjct: 290 RKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSN 349

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS--MDERDLVSWN 132
           ++G  EG+Q+H +I K  Y  + FV + L+ MY+ CG +  A K+F      +RDLVSWN
Sbjct: 350 LAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWN 409

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
            ++   AHHGY +EA+  F++M+K+  KPD  T++ +LSAC HAG +++GL+YF  +  D
Sbjct: 410 GIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKD 469

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            S+   R +HY  +V L GRAG L EA  FI  +   P   V+ ALL+ C VH N +I  
Sbjct: 470 RSI-LVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGK 528

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++AK++L++ P +   Y+LLSN+  +T  W +A  +R  M ++G++K+PG SW+
Sbjct: 529 QAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWI 582



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 129/278 (46%), Gaps = 18/278 (6%)

Query: 7   SRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT 66
           ++C    + + ++  +  R+ ISW A+IAG    G  ++A   F  M +           
Sbjct: 188 AQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPE----------R 237

Query: 67  SIVGAIGVISGFKEGKQM-HAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++V    +I+G+ +  ++  AL +F+   + ++   N ++      G +  A K+F+ M 
Sbjct: 238 NVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMP 297

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGL 183
           +++++SW +++ GC   G S EA+++F +M  T   KP+  TF+ VL AC +   + +G 
Sbjct: 298 KKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQ 357

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES-FINSMSRNPGPSVYKALLSAC 242
           Q   ++      +       +A++ +  + G L  A   F + M+       +  +++A 
Sbjct: 358 QVHQIISKTVYQDSTFV--VSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAY 415

Query: 243 QVHGNREIAVRSAK--RVLDLWPNDPAIYVLLSNVSKA 278
             HG  + A+   K  R     P+D     LLS  S A
Sbjct: 416 AHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHA 453



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 117/259 (45%), Gaps = 28/259 (10%)

Query: 6   YSRCDSSLDFQNVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y +C    + + ++  V  + N ++W A++ G+        A K F+EM           
Sbjct: 93  YIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPN--------- 143

Query: 65  ITSIVGAIGVISGFKEGKQMHA--LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             ++V    +I G+ +  ++ +   +F+   + NV   N ++ M A CG I +A ++F  
Sbjct: 144 -KNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDR 202

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ERD++SW +++ G + +G   EA  LF++M +  +     ++  +++       +D+ 
Sbjct: 203 MPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNV----VSWNAMITGYAQNLRLDEA 258

Query: 183 LQYFYLMRNDASLEPPR--AEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           L  F  M       P R      T I GL+ + G L  A    N M +    S +  +++
Sbjct: 259 LDLFERM-------PERDLPSWNTMITGLI-QNGDLRRARKLFNEMPKKNVIS-WTTMIT 309

Query: 241 ACQVHGNREIAVRSAKRVL 259
            C   G  E A++   R+L
Sbjct: 310 GCVQEGESEEALKIFSRML 328


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 189/304 (62%), Gaps = 2/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++C +    + ++  +  R+ ISW A+I+G+   G  E+AL  F +M++ G  ++ 
Sbjct: 346 VTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNR 405

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             +   + +   I+  + GKQ+H  + K G+ +     N L+ MY  CG+I +A  VF  
Sbjct: 406 SALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFED 465

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + E+D+VSWN+++ G A HG+ +EA+ LFE M+ T IKPD  T + VLSAC H G +DKG
Sbjct: 466 ITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKG 524

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           ++YF  M  +  +    A+HYT ++ LLGRAG L+EA + + SM   P  + + ALL A 
Sbjct: 525 MEYFNSMYQNYGI-TANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGAS 583

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HG+ E+  ++A++V ++ P++  +YVLLSN+  A+  W +  ++R+ M ++G++K PG
Sbjct: 584 RIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPG 643

Query: 303 YSWV 306
           YSWV
Sbjct: 644 YSWV 647



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 116/275 (42%), Gaps = 38/275 (13%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R+  +W A+++GF   G  ++A + F EM +           + V    +I
Sbjct: 266 RRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPE----------KNEVSWNAMI 315

Query: 76  SGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           +G+ + +Q+     +F      N    N +V  YA CG I+ A  +F  M +RD +SW +
Sbjct: 316 AGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAA 375

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-----------HAGFIDKG 182
           ++ G A  G S EA+ LF +M++     + +     LS+C            H   +  G
Sbjct: 376 MISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAG 435

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            Q  Y+  N             A++ + G+ G + EA      ++     S +  +++  
Sbjct: 436 FQTGYIAGN-------------ALLAMYGKCGSIEEAFDVFEDITEKDIVS-WNTMIAGY 481

Query: 243 QVHG-NREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276
             HG  +E         + + P+D  +  +LS  S
Sbjct: 482 ARHGFGKEALALFESMKMTIKPDDVTLVGVLSACS 516



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 18/177 (10%)

Query: 13  LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           L+ +N  S++   + + WN  I+ +   G  E AL  F+ MR+           S V   
Sbjct: 46  LESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRR----------RSTVTYN 95

Query: 73  GVISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
            +ISG+    +      +F+   D ++   N ++  Y   G ++ A  +F+ M E+D+VS
Sbjct: 96  AMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVS 155

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
           WN++L G A +G+  EA ++F+QM  K EI  +G     +LSA    G I+   + F
Sbjct: 156 WNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG-----LLSAYVQNGRIEDARRLF 207



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 114/255 (44%), Gaps = 31/255 (12%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++ +  ++ +SWNA+++GF   G  E+A K F +M           + + +   G++S 
Sbjct: 144 LFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----------LVKNEISWNGLLSA 193

Query: 78  FKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           + +  ++     +F    D  +   N L+  Y     ++DA  +F  M  RD +SWN ++
Sbjct: 194 YVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMI 253

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A +G   EA +LFE++   ++      +  ++S     G +D+  + F  M      
Sbjct: 254 TGYAQNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFEEM------ 303

Query: 196 EPPRAE-HYTAIVGLLGRAGFLNEAESFINSM-SRNPGPSVYKALLSACQVHGNREIAVR 253
            P + E  + A++    ++  + +A    + M SRN   S +  +++     GN    + 
Sbjct: 304 -PEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRN--TSSWNTMVTGYAQCGN----ID 356

Query: 254 SAKRVLDLWPNDPAI 268
            AK + D  P    I
Sbjct: 357 QAKILFDEMPQRDCI 371


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 185/305 (60%), Gaps = 4/305 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I TYS+     D  NV++ + T + + WN+II GF     G++ L  +  M++A    D 
Sbjct: 156 IDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQ 215

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+TS++ A   ++  + G+Q+H  + K  YD ++ + N L+ MY  CG++ DAN +F+ 
Sbjct: 216 STLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTR 273

Query: 123 M-DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           M  E+D++SW++++ G A +G+S +A++LFE M+    KP+  T L VL AC HAG ++ 
Sbjct: 274 MMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVND 333

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G  YF  M+    ++P R EHY  I+ LLGRAG L+EA   I+ M+  P    ++ LL A
Sbjct: 334 GWYYFQSMKEHFGIDPGR-EHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGA 392

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+VH N ++A+ +AK +L L P D   Y+LLSN+   +  W+D  ++R  M  RG++K P
Sbjct: 393 CRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDP 452

Query: 302 GYSWV 306
           G SW+
Sbjct: 453 GCSWI 457



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 98/181 (54%), Gaps = 4/181 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +N++  +  RN +SW  +I+ + N     +AL     M + G+  + +T +S++ A    
Sbjct: 71  RNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRAC--- 127

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
            G    +Q+H  I K+G +S+VFV++ L+  Y+  G  +DA  VF+ M   DLV WNS++
Sbjct: 128 DGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSII 187

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G A +    E + L+++M++ +   D +T   VL AC     ++ G Q + ++++ D  
Sbjct: 188 GGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQD 247

Query: 195 L 195
           L
Sbjct: 248 L 248



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 64/127 (50%)

Query: 47  LKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFM 106
           +K    M +  +  D  T + ++    V    ++ + +H  +F  GY+   F+ N L+ M
Sbjct: 1   MKAMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINM 60

Query: 107 YAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
           Y   G +++A  +F  M +R++VSW +++   ++   + +A+     M +  ++P+  T+
Sbjct: 61  YVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTY 120

Query: 167 LVVLSAC 173
             VL AC
Sbjct: 121 SSVLRAC 127


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 185/307 (60%), Gaps = 7/307 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  +  D Q V+S +  +N I+WN +IA +   G  E+A++ F ++++  I   ++T 
Sbjct: 329 YAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTY 388

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGY------DSNVFVQNRLVFMYAICGAINDANKV 119
            +++ A G I+  + G+Q H  + K G+      +S+VFV N LV MY   G+I+D  KV
Sbjct: 389 GNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKV 448

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M  RD VSWN++++G A +G +++A+ LFE+M  +   PD  T + VLSAC H+G +
Sbjct: 449 FERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLV 508

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           D+G ++F+ M  D  + P R +HYT +V LLGRAG L EAE  I  M   P   ++ +LL
Sbjct: 509 DEGRRHFHFMTEDHGITPSR-DHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLL 567

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
            AC++H N E+  R+A R+ +L P +   YVLLSN+      W D   +R  M +RG+ K
Sbjct: 568 GACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSK 627

Query: 300 KPGYSWV 306
           +PG SW+
Sbjct: 628 QPGCSWI 634



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 32/211 (15%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+  +D + V+ ++  RN +SWN++I  +   G   +AL  F EM   G   D  T+
Sbjct: 196 YAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTL 255

Query: 66  TSIVGAIGVISGFKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGA------------ 112
           +S++ A   ++  +EG+Q+HA ++ +     ++ + N LV MYA CG             
Sbjct: 256 SSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP 315

Query: 113 -------------------INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                              + DA  VFS M E+++++WN L+   A +G   EA++LF Q
Sbjct: 316 SRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQ 375

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++  I P   T+  VL+AC +   +  G Q
Sbjct: 376 LKRDSIWPTHYTYGNVLNACGNIAVLQLGQQ 406



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 15/230 (6%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGE--QALKCFSEMRQAGIDIDY 62
            Y+R     + + ++ ++   +Q S+NA++A     G G    AL+  + M      ++ 
Sbjct: 92  AYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNA 151

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           ++  S + A       + G+Q+H L+ +  +  +V +   LV MYA C    DA +VF +
Sbjct: 152 YSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDA 211

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER++VSWNSL+     +G   EA+ LF +M  T   PD  T   V+SAC       +G
Sbjct: 212 MPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREG 271

Query: 183 LQYFYLM------RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
            Q    M      R+D  L         A+V +  + G   EA    +SM
Sbjct: 272 RQVHAHMVKRDRLRDDMVLN-------NALVDMYAKCGRTWEARCIFDSM 314



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
            +  H  + K       F+ N LV  YA  G + +A +VF  +  R+  S+N+LL   A 
Sbjct: 36  ARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYAR 95

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG--LQYFYLMRND 192
            G   EA  LFE +      PD  ++  V++A    G    G  L++   M  D
Sbjct: 96  LGRPDEARALFEAIP----DPDQCSYNAVVAALARHGRGHAGDALRFLAAMHAD 145


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  233 bits (594), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 180/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     + + V+ ++  ++ +SW A++A +   G  E+ L+ F EM + G  ++    
Sbjct: 202 YAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAF 261

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++     I+  + G Q+H  + + GY    FV N L+ MY  CG + DA   F  M+E
Sbjct: 262 ACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEE 321

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWN+++ G A HG+ +EA+++F+ M+ T  KPD  T + VL+AC H+G ++KG+ Y
Sbjct: 322 RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISY 381

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           FY M +D  +   + EHYT ++ LLGRAG L EA   +  M   P  +++ ALL A ++H
Sbjct: 382 FYSMHHDFGV-TAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIH 440

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +A+++ +L P +  +YVLLSN+  ++  W DA  +R +M  RG++K PG+SW
Sbjct: 441 RNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSW 500

Query: 306 V 306
           +
Sbjct: 501 I 501



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%), Gaps = 8/184 (4%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           + +  Y+R    ++ + ++ +   R+  +W A+++G+   G  E+A + F  M +     
Sbjct: 104 IMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER---- 159

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           +  +  ++V A        E K+    +F +    NV   N ++  YA  G + +A  VF
Sbjct: 160 NAVSWNAMVAAYIQRRMMDEAKE----LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVF 215

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            +M ++D VSW ++L   +  G S E +QLF +M +     + + F  VLS C     ++
Sbjct: 216 DTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALE 275

Query: 181 KGLQ 184
            G+Q
Sbjct: 276 CGMQ 279



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 16/189 (8%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y R     + + +++S    + ISWNA+++G+   G   +A + F   R  G D+  
Sbjct: 44  LAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFD--RMPGRDVVS 101

Query: 63  FTITSIVGAIGVISGF-KEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           + I        ++SG+ + G  + A  +F      +VF    +V  YA  G + +A +VF
Sbjct: 102 WNI--------MVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF 153

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            +M ER+ VSWN+++          EA +LF  M    +     ++  +L+    AG ++
Sbjct: 154 DAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLE 209

Query: 181 KGLQYFYLM 189
           +    F  M
Sbjct: 210 EAKAVFDTM 218



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 105/249 (42%), Gaps = 31/249 (12%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF-KEGK 82
            R+ +++N +I+   N G    A   F          D       V   G+++ + + G+
Sbjct: 3   VRDSVTYNVMISSHANHGLVSLARHYF----------DLAPEKDAVSWNGMLAAYVRNGR 52

Query: 83  QMHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
              A  +F    + +V   N L+  Y   G +++A ++F  M  RD+VSWN ++ G A  
Sbjct: 53  VEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARR 112

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR-A 200
           G   EA +LF+     ++     T+  V+S     G +++  + F  M       P R A
Sbjct: 113 GDMVEARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEEARRVFDAM-------PERNA 161

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMS-RNPGPSVYKALLSACQVHGNREIAVRSAKRVL 259
             + A+V    +   ++EA+   N M  RN   + +  +L+     G  E     AK V 
Sbjct: 162 VSWNAMVAAYIQRRMMDEAKELFNMMPCRN--VASWNTMLTGYAQAGMLE----EAKAVF 215

Query: 260 DLWPNDPAI 268
           D  P   A+
Sbjct: 216 DTMPQKDAV 224


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 176/301 (58%), Gaps = 8/301 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   V++ +  R+ ISWN+IIAG    G  ++ L+ F +M  A I    ++ 
Sbjct: 284 YAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSF 343

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+ A   ++    GKQ+H  I + G+D N+F+ + LV MYA CG I  A ++F  M  
Sbjct: 344 SSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRL 403

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSW ++++GCA HG + +A++LFEQM+   IK        VL+AC H G +D+  +Y
Sbjct: 404 RDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKY 456

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  + P   EHY A+  LLGRAG L EA  FI  M   P  S++  LLSAC+VH
Sbjct: 457 FNSMTRDFGIAPG-VEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVH 515

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++A + A R+L++ PN+   Y+LL+N+  A   W +A   R  M   GIRK P  SW
Sbjct: 516 KNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSW 575

Query: 306 V 306
           +
Sbjct: 576 I 576



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 123/238 (51%), Gaps = 5/238 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  ++ +SWN IIAG    G  E+ L+   EM  A +  D FT++S++  I   
Sbjct: 193 RKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAEN 252

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                GK++H    + G D++++V + L+ MYA C  + D+ +VF+ + ERD +SWNS++
Sbjct: 253 VDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSII 312

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            GC  +G   E ++ F QM   +IKP   +F  ++ AC H   +  G Q + Y+ RN   
Sbjct: 313 AGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 372

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
                A   +++V +  + G +  A+   + M      S + A++  C +HG    A+
Sbjct: 373 ENIFIA---SSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-WTAMIMGCALHGQAPDAI 426



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 32/197 (16%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS  +   D   +++++     ++W ++I  + + G   Q+L  F  M  +G+  D+   
Sbjct: 50  YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVF 109

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI-------------CGA 112
            S++ +  ++     G+ +H  I ++G D +++  N L+ MY+               G 
Sbjct: 110 PSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGE 169

Query: 113 IND-------------------ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           + D                     K+F  M E+DLVSWN+++ G A +G   E +++  +
Sbjct: 170 VFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIRE 229

Query: 154 MQKTEIKPDGTTFLVVL 170
           M    +KPD  T   VL
Sbjct: 230 MGGANLKPDSFTLSSVL 246


>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
          Length = 446

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 185/307 (60%), Gaps = 7/307 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  +  D Q V+S +  +N I+WN +IA +   G  E+A++ F ++++  I   ++T 
Sbjct: 87  YAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTY 146

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGY------DSNVFVQNRLVFMYAICGAINDANKV 119
            +++ A G I+  + G+Q H  + K G+      +S+VFV N LV MY   G+I+D  KV
Sbjct: 147 GNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKV 206

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M  RD VSWN++++G A +G +++A+ LFE+M  +   PD  T + VLSAC H+G +
Sbjct: 207 FERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLV 266

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           D+G ++F+ M  D  + P R +HYT +V LLGRAG L EAE  I  M   P   ++ +LL
Sbjct: 267 DEGRRHFHFMTEDHGITPSR-DHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLL 325

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
            AC++H N E+  R+A R+ +L P +   YVLLSN+      W D   +R  M +RG+ K
Sbjct: 326 GACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSK 385

Query: 300 KPGYSWV 306
           +PG SW+
Sbjct: 386 QPGCSWI 392



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 32/164 (19%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICG 111
           M   G   D  T++S++ A   ++  +EG+Q+HA ++ +     ++ + N LV MYA CG
Sbjct: 1   MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 60

Query: 112 A-------------------------------INDANKVFSSMDERDLVSWNSLLLGCAH 140
                                           + DA  VFS M E+++++WN L+   A 
Sbjct: 61  RTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ 120

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +G   EA++LF Q+++  I P   T+  VL+AC +   +  G Q
Sbjct: 121 NGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQ 164


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 111/293 (37%), Positives = 174/293 (59%), Gaps = 1/293 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + +++ +  R+  +W  I+AG+   G GE+A+KCF +M++ G+  + FT+ S +    
Sbjct: 344 DAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCS 403

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            I+    G+Q+H++  K G   ++FV + LV MYA CG + DA  VF  +  RD VSWN+
Sbjct: 404 RIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNT 463

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G + HG   +A++ FE M      PD  TF+ VLSAC H G I++G ++F  +    
Sbjct: 464 IICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIY 523

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            +  P  EHY  +V +LGRAG  +E ESFI  M       +++ +L AC++HGN E   R
Sbjct: 524 GI-TPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGER 582

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +A ++ +L P   + Y+LLSN+  A   WDD  ++R LM  RG++K+PG SWV
Sbjct: 583 AAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWV 635



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 127/257 (49%), Gaps = 6/257 (2%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C S+     V+  +  R+ +SW A+I GF   G G   L+ F++M   G + + +T
Sbjct: 235 VYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYT 293

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             SI+ +   +S    GKQ+HA I K   D N FV   LV MYA    + DA  +F+ + 
Sbjct: 294 FISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLI 353

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +RDL +W  ++ G A  G   +AV+ F QMQ+  +KP+  T    LS C     +D G Q
Sbjct: 354 KRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ 413

Query: 185 YFYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
              + ++   S +   A   +A+V +  + G + +AE   + +      S +  ++    
Sbjct: 414 LHSMAIKAGQSGDMFVA---SALVDMYAKCGCVEDAEVVFDGLVSRDTVS-WNTIICGYS 469

Query: 244 VHGNREIAVRSAKRVLD 260
            HG    A+++ + +LD
Sbjct: 470 QHGQGGKALKAFEAMLD 486



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 110/227 (48%), Gaps = 5/227 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +  S  +    + ++   N  S N +++GFC+  + +Q  +   ++   G + + 
Sbjct: 132 VTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNM 191

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T  SI+          EGK +H  + K G + +  + N LV +YA CG+ N A KVF  
Sbjct: 192 YTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGE 251

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ERD+VSW +L+ G    GY    +++F QM      P+  TF+ +L +C     +D G
Sbjct: 252 IPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG 310

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
            Q +  +++N            TA+V +  +  FL +AE+  N + +
Sbjct: 311 KQVHAQIVKNSLDGNDFVG---TALVDMYAKNRFLEDAETIFNRLIK 354



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 84/178 (47%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y +C+S    + V   +  ++   WN  ++   +    ++A++ F  MR   I ++ F 
Sbjct: 33  VYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIRLNQFI 92

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++ A   +     G+ +HA + K G++S++ + N  V MY    ++ +  + F +M 
Sbjct: 93  FASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMM 152

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             +L S N+LL G        +  ++  Q+     +P+  TF+ +L  C   G +++G
Sbjct: 153 IENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEG 210



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 16/174 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D + V+  + +R+ +SWN II G+   G G +ALK F  M   G   D  T 
Sbjct: 437 YAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTF 496

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   +   +EGK+    + KI Y     +++    M  I G     ++V S ++E
Sbjct: 497 IGVLSACSHMGLIEEGKKHFNSLSKI-YGITPTIEH-YACMVDILGRAGKFHEVESFIEE 554

Query: 126 RDLVS----WNSLLLGCAHHGY----SREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             L S    W ++L  C  HG      R A++LF      E++P+  +  ++LS
Sbjct: 555 MKLTSNVLIWETVLGACKMHGNIEFGERAAMKLF------ELEPEIDSNYILLS 602



 Score = 37.7 bits (86), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 42/90 (46%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           + K G   +  + + LV +Y  C ++  A +V   M  +D+  WN  L         +EA
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           VQLF  M+ T I+ +   F  ++SA    G
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLG 104


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 182/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C  +     V+ ++  R+ I WN+++AG    GS E+AL  F  M Q G+     T 
Sbjct: 216 YANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTF 275

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++   G ++  + GKQ+HA + + G++ NVF+ + L+ MY  CG I+ A+ +F  M  
Sbjct: 276 SSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCS 335

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VSW ++++G A HG +REA+ LFE+M+    KP+  TFL VL+AC HAG +DKG +Y
Sbjct: 336 PDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKY 395

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M +   +  P  EH  A+  +LGRAG L+EA +FI+ M   P  SV+  LL AC+VH
Sbjct: 396 FKSMSDHYGIV-PTLEHCAALADILGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVH 454

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +A   AK++++L P     +V+LSN+  A+  W++A  +R  M  +G++K P  SW
Sbjct: 455 KNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRKSMRKKGMKKDPACSW 514

Query: 306 V 306
           +
Sbjct: 515 I 515



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 97/176 (55%), Gaps = 1/176 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ +SWN ++ G    G   +AL    +M + G   D FT++S++      
Sbjct: 125 RKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAEC 184

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  K G ++H    + G+D++VFV + L+ MYA C   + + KVF ++  RD + WNS+L
Sbjct: 185 ADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVL 244

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMR 190
            GCA +G   EA+ +F +M +T ++P   TF  ++  C +   +  G Q + Y++R
Sbjct: 245 AGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIR 300



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 20/131 (15%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMY--------------AICG-----AINDANKVFS 121
           G  +HAL  + G  ++ F  N L+ +Y              ++ G     A+    KVF 
Sbjct: 70  GASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFD 129

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M ERD+VSWN+L+LGCA  G   EA+ L  +M +   +PD  T   VL        + +
Sbjct: 130 EMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKR 189

Query: 182 GLQ-YFYLMRN 191
           G + + + +RN
Sbjct: 190 GSEVHGFAVRN 200


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 178/299 (59%), Gaps = 4/299 (1%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           R D +  F   +  +  RN ++W  +I+G    G GE++LK F+ M+  G +   +    
Sbjct: 376 RIDEAKSF---FEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAG 432

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
            + A   ++    G+Q+HA + ++G+DS++   N L+ MYA CG +  A+ +F +M   D
Sbjct: 433 AIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLD 492

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
            VSWN+++     HG+  +A++LFE M K +I PD  TFL VLS C HAG +++G +YF 
Sbjct: 493 SVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFK 552

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN 247
            M     + P   +HY  ++ LL RAG  +EA+  I +M   PGP +++ALL+ C++HGN
Sbjct: 553 SMSGLYGICPGE-DHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGN 611

Query: 248 REIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            ++ +++A+R+ +L P     YVLLSN+      WDD   +R LM ++G++K+PG SW+
Sbjct: 612 MDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWI 670



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 97/174 (55%), Gaps = 9/174 (5%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           ++WNA+I+G+ + G   +AL+ F +M   GI  D FT TS++ A      F  GKQ+HA 
Sbjct: 257 VAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAY 316

Query: 88  IFKI----GYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           I +       D ++ V N L  +Y  CG +++A +VF+ M  +DLVSWN++L G  + G 
Sbjct: 317 ILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGR 376

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
             EA   FE+M +  +     T+ V++S     GF ++ L+ F  M+++   EP
Sbjct: 377 IDEAKSFFEEMPERNL----LTWTVMISGLAQNGFGEESLKLFNRMKSEG-FEP 425



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 51/249 (20%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG-VISGFKEGKQ 83
           R+ + +NA+I G+ +   G  A++ F ++ + G   D FT TS++GA+  ++   K+ +Q
Sbjct: 112 RDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQ 171

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICG---------AINDANKVFSSMDERD------- 127
           +H  + K G      V N L+ ++  C           +  A K+F  M ERD       
Sbjct: 172 IHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTM 231

Query: 128 ------------------------LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG 163
                                   +V+WN+++ G  HHG+  EA+++F +M    I+ D 
Sbjct: 232 IAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDE 291

Query: 164 TTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYT-----AIVGLLGRAGFLN 217
            T+  VLSAC +AGF   G Q + Y++R     EP  +  ++     A+  L  + G ++
Sbjct: 292 FTYTSVLSACANAGFFLHGKQVHAYILRT----EPRPSLDFSLSVNNALATLYWKCGKVD 347

Query: 218 EAESFINSM 226
           EA    N M
Sbjct: 348 EARQVFNQM 356


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 177/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D + V+  +  R+ +SW  ++  +     GE+AL  F  MR+ G   + FT 
Sbjct: 417 YSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTF 476

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ +   +   + G+Q+H L+ K G D+   +++ L+ MYA CG+I +A KVF  +  
Sbjct: 477 SSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISN 536

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VSW +++ G A HG   +A+QLF +M+ + IK +  T L VL AC H G +++GL Y
Sbjct: 537 PDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFY 596

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M +   +  P  EHY  I+ LLGR G L++A  FI  M   P   V++ LL  C+VH
Sbjct: 597 FQQMEDGYGV-VPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVH 655

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+   +A+++L + P   A YVLLSN    T  ++D   +R +M ++G++K+PGYSW
Sbjct: 656 GNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSW 715

Query: 306 V 306
           +
Sbjct: 716 I 716



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 130/256 (50%), Gaps = 6/256 (2%)

Query: 6   YSRCDSSLDFQNVYSS--VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           YS+C S  D ++V+ +  +       WNA+I+G+   G  ++AL+ + +M Q GI  D +
Sbjct: 313 YSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLY 372

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVF-VQNRLVFMYAICGAINDANKVFSS 122
           T  S+  AI      + G+ +H ++ K G D  V  V N +   Y+ CG + D  KVF  
Sbjct: 373 TYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDR 432

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+ERD+VSW +L+   +      EA+  F  M++    P+  TF  VL +C    F++ G
Sbjct: 433 MEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYG 492

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            Q   L+   A L+  +    +A++ +  + G + EA    + +S NP    + A++S  
Sbjct: 493 RQVHGLL-CKAGLDTEKCIE-SALIDMYAKCGSITEAGKVFDKIS-NPDIVSWTAIISGY 549

Query: 243 QVHGNREIAVRSAKRV 258
             HG  E A++  +R+
Sbjct: 550 AQHGLVEDALQLFRRM 565



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 11/233 (4%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            YS+C        V+  +  RN  SW  +I G    G      K F EM  +GI  D F 
Sbjct: 110 VYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFA 169

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            ++I+ +   +   + GK +HA I   G+ +++FV   L+ MYA  G+I D+  VF+ M 
Sbjct: 170 YSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMT 229

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E + VSWN+++ GC  +G   EA  LF +M+     P+  T + V  A      ++ G +
Sbjct: 230 EHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKE 289

Query: 185 YFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAES-----FINSMSRNP 230
               ++N AS           TA++ +  + G L++A S     FIN     P
Sbjct: 290 ----VQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTP 338



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 79  KEGKQMHALIFKIGY-DSNVFVQ-NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
           +E K +H L+ K  + D ++ V  N    +Y+ C     A  VF  M +R++ SW  +++
Sbjct: 81  REAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIV 140

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG--LQYFYLMRNDAS 194
           G   HG   +  + F +M  + I PD   +  ++ +C     ++ G  +    +MR  A+
Sbjct: 141 GSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFAT 200

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
                    T+++ +  + G + ++    N M+ +   S + A++S C  +G    A   
Sbjct: 201 ----HIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVS-WNAMISGCTSNGLHLEAFDL 255

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKAT 279
             R+ +     P +Y L+S VSKA 
Sbjct: 256 FVRMKN-GACTPNMYTLVS-VSKAV 278


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/293 (37%), Positives = 174/293 (59%), Gaps = 1/293 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + +++ +  R+  +W  I+AG+   G GE+A+KCF +M++ G+  + FT+ S +    
Sbjct: 585 DAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCS 644

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            I+    G+Q+H++  K G   ++FV + LV MYA CG + DA  VF  +  RD VSWN+
Sbjct: 645 RIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNT 704

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G + HG   +A++ FE M      PD  TF+ VLSAC H G I++G ++F  +    
Sbjct: 705 IICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIY 764

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            + P   EHY  +V +LGRAG  +E ESFI  M       +++ +L AC++HGN E   R
Sbjct: 765 GITPT-IEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGER 823

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +A ++ +L P   + Y+LLSN+  A   WDD  ++R LM  RG++K+PG SWV
Sbjct: 824 AAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWV 876



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S+     V+  +  R+ +SW A+I GF   G G  A+  F EMR+ G++ + FT 
Sbjct: 173 YAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTY 232

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            + + A  +    + GKQ+HA   K+G  S++FV + LV +YA CG +  A +VF  M +
Sbjct: 233 ATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPK 292

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           ++ VSWN+LL G A  G + + + LF +M  +EI     T   VL  C ++G +  G + 
Sbjct: 293 QNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIV 352

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +   +R    L+   +     +V +  + G   +A      +  +P    + A+++    
Sbjct: 353 HSLAIRIGCELDEFIS---CCLVDMYSKCGLAGDALKVFVRI-EDPDVVSWSAIITCLDQ 408

Query: 245 HGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWD 283
            G    A    KR+    + PN    + L S VS ATD  D
Sbjct: 409 KGQSREAAEVFKRMRHSGVIPNQ---FTLASLVSAATDLGD 446



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 129/259 (49%), Gaps = 5/259 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +  S  D   V+ +   R+ ISWNA+++GF +  + +  L+ F++M   G + + 
Sbjct: 473 VTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNM 532

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T  SI+ +   +S    GKQ+HA I K   D N FV   LV MYA    + DA  +F+ 
Sbjct: 533 YTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNR 592

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + +RDL +W  ++ G A  G   +AV+ F QMQ+  +KP+  T    LS C     +D G
Sbjct: 593 LIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSG 652

Query: 183 LQYFYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            Q   + ++   S +   A   +A+V +  + G + +AE   + +      S +  ++  
Sbjct: 653 RQLHSMAIKAGQSGDMFVA---SALVDMYAKCGCVEDAEVVFDGLVSRDTVS-WNTIICG 708

Query: 242 CQVHGNREIAVRSAKRVLD 260
              HG    A+++ + +LD
Sbjct: 709 YSQHGQGGKALKAFEAMLD 727



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 4/222 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C  + D   V+  +   + +SW+AII      G   +A + F  MR +G+  + FT+
Sbjct: 375 YSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTL 434

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+V A   +     G+ +HA + K G++ +  V N LV MY   G++ D  +VF +   
Sbjct: 435 ASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTN 494

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RDL+SWN+LL G   +      +++F QM      P+  TF+ +L +C     +D G Q 
Sbjct: 495 RDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQV 554

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           +  +++N            TA+V +  +  FL +AE+  N +
Sbjct: 555 HAQIVKNSLDGNDFVG---TALVDMYAKNRFLEDAETIFNRL 593



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 55/96 (57%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             EGK +H  + K G + +  + N LV +YA CG+ N A KVF  + ERD+VSW +L+ G
Sbjct: 144 LNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITG 203

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
               GY   AV LF +M++  ++ +  T+   L AC
Sbjct: 204 FVAEGYGSGAVNLFCEMRREGVEANEFTYATALKAC 239



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 10/155 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D + V+  + +R+ +SWN II G+   G G +ALK F  M   G   D  T 
Sbjct: 678 YAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTF 737

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   +   +EGK+    + KI Y     +++    M  I G     ++V S ++E
Sbjct: 738 IGVLSACSHMGLIEEGKKHFNSLSKI-YGITPTIEH-YACMVDILGRAGKFHEVESFIEE 795

Query: 126 RDLVS----WNSLLLGCAHHGY----SREAVQLFE 152
             L S    W ++L  C  HG      R A++LFE
Sbjct: 796 MKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFE 830


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 183/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C   ++ + +++ +  +  +SWN+II+GF +    E A + FS+M + GI  D +T 
Sbjct: 486 YGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTY 545

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++     ++  + GKQ+HA I K+   S+V++ + LV MY+ CG + D+  +F    +
Sbjct: 546 ATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPK 605

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD V+W++++   A+HG   +A+ LFE+MQ   +KP+ T F+ VL AC H G++DKGL Y
Sbjct: 606 RDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHY 665

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M +   L+ P+ EHY+ +V LLGR+G +NEA   I SM       +++ LLS C++ 
Sbjct: 666 FQKMLSHYGLD-PQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQ 724

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+A ++   +L L P D + YVLL+NV      W +   +R++M N  ++K+PG SW
Sbjct: 725 GNVEVAEKAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSW 784

Query: 306 V 306
           +
Sbjct: 785 I 785



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 131/260 (50%), Gaps = 11/260 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+   D   V++++    + S+NAII G+     G +AL  F  +++  +  D  ++
Sbjct: 284 YAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISL 343

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +  + A  VI    EG Q+H L  K G   N+ V N ++ MY  CGA+ +A  +F  M+ 
Sbjct: 344 SGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMER 403

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQ---LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           RD VSWN+++   A H  + E V+   LF  M ++ ++PD  T+  V+ AC     ++ G
Sbjct: 404 RDAVSWNAII---AAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYG 460

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            + +  ++++   L+       +A+V + G+ G L EAE     +      S + +++S 
Sbjct: 461 TEIHGRIIKSGMGLDWFVG---SALVDMYGKCGMLMEAEKIHARLEEKTTVS-WNSIISG 516

Query: 242 CQVHGNREIAVRSAKRVLDL 261
                  E A R   ++L++
Sbjct: 517 FSSQKQSENAQRYFSQMLEM 536



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 90/179 (50%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C + ++   ++  +  R+ +SWNAIIA         + L  F  M ++ ++ D FT 
Sbjct: 385 YGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTY 444

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+V A         G ++H  I K G   + FV + LV MY  CG + +A K+ + ++E
Sbjct: 445 GSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEE 504

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +  VSWNS++ G +    S  A + F QM +  I PD  T+  VL  C +   I+ G Q
Sbjct: 505 KTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQ 563



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q+++ S+  R+ +SWN++++ + + G   ++++ F  MR   I  DY T   I+ A   I
Sbjct: 92  QSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVILKACSGI 151

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             +  G Q+H L  ++G++++V   + LV MY+ C  ++DA +VF  M ER+LV W++++
Sbjct: 152 EDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVI 211

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G   +    E ++LF+ M K  +    +T+  V  +C        G Q + + +++D +
Sbjct: 212 AGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFA 271

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
            +       TA + +  +   + +A    N++  NP    Y A++
Sbjct: 272 YDSIIG---TATLDMYAKCERMFDAWKVFNTLP-NPPRQSYNAII 312



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 114/260 (43%), Gaps = 28/260 (10%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D   V+  +  RN + W+A+IAG+       + LK F +M + G+ +   T 
Sbjct: 183 YSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTY 242

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+  +   +S FK G Q+H    K  +  +  +    + MYA C  + DA KVF+++  
Sbjct: 243 ASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPN 302

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC----------- 174
               S+N++++G A      +A+ +F+ +Q+  +  D  +    L+AC            
Sbjct: 303 PPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQL 362

Query: 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
           H   +  GL +   + N              I+ + G+ G L EA      M R    S 
Sbjct: 363 HGLAVKCGLGFNICVAN-------------TILDMYGKCGALMEACLIFEEMERRDAVS- 408

Query: 235 YKALLSACQVHGNREIAVRS 254
           + A+++A   H   E  V++
Sbjct: 409 WNAIIAA---HEQNEEIVKT 425



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 2/88 (2%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           +V   N L+F YA  G +  A  +F SM ERD+VSWNSLL    H+G +R+++++F +M+
Sbjct: 71  DVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMR 130

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             +I  D  TF V+L AC  +G  D GL
Sbjct: 131 SLKIPHDYATFAVILKAC--SGIEDYGL 156


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 179/301 (59%), Gaps = 1/301 (0%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            Y +C      + V+S + + + ++W  +I+G    G  E AL  + +MR + +  D +T 
Sbjct: 1183 YLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTF 1242

Query: 66   TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++V A  +++  ++G+Q+HA I K+    + FV   LV MYA CG I DA  +F   + 
Sbjct: 1243 ATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNT 1302

Query: 126  RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            R + SWN++++G A HG ++EA+Q F+ M+   + PD  TF+ VLSAC H+G + +  + 
Sbjct: 1303 RRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYEN 1362

Query: 186  FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            FY M+ +  +E P  EHY+ +V  L RAG + EAE  I+SM      S+Y+ LL+AC+V 
Sbjct: 1363 FYSMQKNYGIE-PEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQ 1421

Query: 246  GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
             +RE   R A+++L L P+D A YVLLSNV  A + W++    R +M    ++K PG+SW
Sbjct: 1422 VDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSW 1481

Query: 306  V 306
            V
Sbjct: 1482 V 1482



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 29   SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
            SWNAI+ G+   G   +AL+ +  M+++G   D  T+ +   A G + G K+GKQ+HA++
Sbjct: 1105 SWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVV 1164

Query: 89   FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
             K G++ ++FV + ++ MY  CG +  A +VFS +   D V+W +++ GC  +G    A+
Sbjct: 1165 VKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHAL 1224

Query: 149  QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIV 207
              + QM+ ++++PD  TF  ++ AC     +++G Q +  +++ + + +P      T++V
Sbjct: 1225 FTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFV---MTSLV 1281

Query: 208  GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
             +  + G + +A       +     S + A++     HGN + A++
Sbjct: 1282 DMYAKCGNIEDARGLFKRTNTRRIAS-WNAMIVGLAQHGNAKEALQ 1326



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 77/146 (52%)

Query: 28   ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
            I WN  ++ F   G   +A+ CF +M  + +  D  T   ++  +  ++  + GKQ+H +
Sbjct: 901  IVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGI 960

Query: 88   IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
            + + G D  V V N L+ MY   G+++ A  VF  M+E DL+SWN+++ GC   G    +
Sbjct: 961  VMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECS 1020

Query: 148  VQLFEQMQKTEIKPDGTTFLVVLSAC 173
            V +F  + +  + PD  T   VL AC
Sbjct: 1021 VGMFVHLLRDSLLPDQFTVASVLRAC 1046



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 3/167 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFC-NLGSGEQALKCFSEMRQAGID 59
           I  Y++C S    + ++ +     R+ ++WNAI++    +          F  +R++ + 
Sbjct: 698 ITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVS 757

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
               T+  +     + +     + +H    KIG   +VFV   LV +YA  G I +A  +
Sbjct: 758 TTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVL 817

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
           F  M  RD+V WN ++          EA+ LF +  +T  +PD  T 
Sbjct: 818 FDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTL 864



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 114/254 (44%), Gaps = 10/254 (3%)

Query: 3    ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
            I  Y +  S    ++V+  +   + ISWN +I+G    G  E ++  F  + +  +  D 
Sbjct: 977  INMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQ 1036

Query: 63   FTITSIVGAIGVISG-FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            FT+ S++ A   + G +    Q+HA   K G   + FV   L+ +Y+  G + +A  +F 
Sbjct: 1037 FTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFV 1096

Query: 122  SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + D  DL SWN+++ G    G   +A++L+  MQ++  + D  T +    A      + +
Sbjct: 1097 NQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQ 1156

Query: 182  GLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS--VYKAL 238
            G Q +  +++   +L+           G+L       E ES     S  P P    +  +
Sbjct: 1157 GKQIHAVVVKRGFNLD------LFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTM 1210

Query: 239  LSACQVHGNREIAV 252
            +S C  +G  E A+
Sbjct: 1211 ISGCVENGQEEHAL 1224



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 19/129 (14%)

Query: 48  KCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMY 107
           +CFS +RQA            + A    S    GK+ HA I   G+  + FV N L+ MY
Sbjct: 658 QCFSILRQA------------IAA----SDLSLGKRAHARILTSGHHPDRFVTNNLITMY 701

Query: 108 AICGAINDANKVFSSMDE--RDLVSWNSLLLGCAHHG-YSREAVQLFEQMQKTEIKPDGT 164
           A CG+++ A K+F +  +  RDLV+WN++L   A H   S +   LF  ++++ +     
Sbjct: 702 AKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRH 761

Query: 165 TFLVVLSAC 173
           T   V   C
Sbjct: 762 TLAPVFKMC 770



 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 94/236 (39%), Gaps = 32/236 (13%)

Query: 18   VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
            ++  +  R+ + WN ++  + +     +A+  FSE  + G   D  T+ ++   +     
Sbjct: 817  LFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKN 876

Query: 78   FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              E KQ  A   K+             FMY      +D        D  D++ WN  L  
Sbjct: 877  ILELKQFKAYATKL-------------FMY------DD--------DGSDVIVWNKALSR 909

Query: 138  CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLE 196
                G + EAV  F  M  + +  DG TF+V+L+       ++ G Q +  +MR+     
Sbjct: 910  FLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQV 969

Query: 197  PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
                     ++ +  +AG ++ A S    M+     S +  ++S C + G  E +V
Sbjct: 970  VSVG---NCLINMYVKAGSVSRARSVFGQMNEVDLIS-WNTMISGCTLSGLEECSV 1021


>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
          Length = 493

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 116/290 (40%), Positives = 174/290 (60%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +   +++SW A+I G    G  ++A+ CF  M   G++ DY T+ +++ A   + 
Sbjct: 157 EVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPDYVTLIAVISACAEVG 216

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G  +H L+ + G + NV + N L+ MYA CG +  A +VFS M +R +VSWNS+++
Sbjct: 217 ALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIV 276

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A +G   +AV+ FE M++   KPD  TF  VL+AC H G  D+GL+Y+ LMR +  + 
Sbjct: 277 GFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIA 336

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
             R EHY  +V LLGR+G L EA   + +M   P   V  ALL+ C++HG+  +A +  +
Sbjct: 337 -ARMEHYGCVVDLLGRSGRLEEAMRVVTTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQ 395

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +L+L P   A YVLLSN+  A   WD AG +R+LM  RG+RK+PGYS V
Sbjct: 396 HLLELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGLRKRPGYSAV 445



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC      + V+S +R R  +SWN++I GF   G    A++ F  MR+ G   D  T 
Sbjct: 247 YARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTF 306

Query: 66  TSIVGAIGVISGFKEGKQMHALI-FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           T ++ A        EG + + L+  + G  + +     +V +    G + +A +V ++M 
Sbjct: 307 TGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGRLEEAMRVVTTMP 366

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            R + V   +LL GC  HG    A QL + +   E+ P G    V+LS
Sbjct: 367 MRPNEVVLGALLAGCRMHGDVGMAEQLMQHL--LELDPGGDANYVLLS 412



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G +  A +VF  M   D VSW +L+ GC  +G   EA+  F  M    ++PD  T + V+
Sbjct: 150 GLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPDYVTLIAVI 209

Query: 171 SACCHAGFIDKGL 183
           SAC   G +  G+
Sbjct: 210 SACAEVGALGLGM 222


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 121/311 (38%), Positives = 188/311 (60%), Gaps = 8/311 (2%)

Query: 3   ILT-YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           ILT Y++  +  D Q V+S +  +N I+WN +IA +   G  E+A++ F ++++  I   
Sbjct: 325 ILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPT 384

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGY------DSNVFVQNRLVFMYAICGAIND 115
           ++T  +++ A G I+  + G+Q H  + K G+      +S+VFV N LV MY   G+I+D
Sbjct: 385 HYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDD 444

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
             KVF  M  RD VSWN++++G A +G +++A+ LFE+M  +   PD  T + VLSAC H
Sbjct: 445 GAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGH 504

Query: 176 AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVY 235
           +G +D+G +YF+ M  D  + P R +HYT +V LLGRAG L EAE  IN M   P   ++
Sbjct: 505 SGLVDEGRRYFHSMTEDHGITPSR-DHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLW 563

Query: 236 KALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295
            +LL AC++H N E+   +A R+ +L P +   YVLLSN+      W +   +R  M +R
Sbjct: 564 ASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDR 623

Query: 296 GIRKKPGYSWV 306
           G+ K+PG SW+
Sbjct: 624 GVSKQPGCSWI 634



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 32/211 (15%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+   D + V+ ++  RN +SWN++I  +   G   +AL  F EM  AG   D  T+
Sbjct: 196 YAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTL 255

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGA------------ 112
           +S++ A   ++  +EG+Q+HA + K      ++ + N LV MYA CG             
Sbjct: 256 SSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP 315

Query: 113 -------------------INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                              + DA  VFS M E+++++WN L+   A +G   EA++LF Q
Sbjct: 316 SRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQ 375

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++  I P   T+  VL+AC +   +  G Q
Sbjct: 376 LKRDSIWPTHYTYGNVLNACGNIADLQLGQQ 406



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 15/230 (6%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGE--QALKCFSEMRQAGIDIDY 62
            Y+R     + + ++ ++   +Q S+NA++A     G G    AL+  + M      ++ 
Sbjct: 92  AYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNA 151

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           ++  S + A       + G+Q+H L+ +  +  +V +++ LV MYA C    DA +VF +
Sbjct: 152 YSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDA 211

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER++VSWNSL+     +G   EA+ LF +M      PD  T   V+SAC       +G
Sbjct: 212 MPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREG 271

Query: 183 LQYFYLM------RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
            Q    M      R+D  L         A+V +  + G   EA    +SM
Sbjct: 272 RQVHAHMVKCDRLRDDMVLN-------NALVDMYAKCGRTWEARCIFDSM 314



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
            +  HA I K       F+ N LV  YA  G + DA +VF  +  R+  S+N+LL   A 
Sbjct: 36  ARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYAR 95

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
            G   EA  LFE +      PD  ++  V++A    G
Sbjct: 96  LGRPDEARALFEAIP----DPDQCSYNAVVAALARHG 128



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           + F + ++V     +   ++ ++    +F      N F  N L+  YA  G  ++A  +F
Sbjct: 51  ETFLLNTLVSTYARLGRLRDARR----VFDEIPLRNTFSYNALLSAYARLGRPDEARALF 106

Query: 121 SSMDERDLVSWNSLLLGCAHH--GYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            ++ + D  S+N+++   A H  G++ +A++    M   +   +  +F   LSAC
Sbjct: 107 EAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSAC 161


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 177/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D + V+  +  R+ +SW  ++  +     GE+AL  F  MR+ G   + FT 
Sbjct: 471 YSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTF 530

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ +   +   + G+Q+H L+ K G D+   +++ L+ MYA CG+I +A KVF  +  
Sbjct: 531 SSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISN 590

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VSW +++ G A HG   +A+QLF +M+ + IK +  T L VL AC H G +++GL Y
Sbjct: 591 PDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFY 650

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M +   +  P  EHY  I+ LLGR G L++A  FI  M   P   V++ LL  C+VH
Sbjct: 651 FQQMEDGYGV-VPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVH 709

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+   +A+++L + P   A YVLLSN    T  ++D   +R +M ++G++K+PGYSW
Sbjct: 710 GNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSW 769

Query: 306 V 306
           +
Sbjct: 770 I 770



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 130/256 (50%), Gaps = 6/256 (2%)

Query: 6   YSRCDSSLDFQNVYSS--VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           YS+C S  D ++V+ +  +       WNA+I+G+   G  ++AL+ + +M Q GI  D +
Sbjct: 367 YSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLY 426

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVF-VQNRLVFMYAICGAINDANKVFSS 122
           T  S+  AI      + G+ +H ++ K G D  V  V N +   Y+ CG + D  KVF  
Sbjct: 427 TYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDR 486

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+ERD+VSW +L+   +      EA+  F  M++    P+  TF  VL +C    F++ G
Sbjct: 487 MEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYG 546

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            Q   L+   A L+  +    +A++ +  + G + EA    + +S NP    + A++S  
Sbjct: 547 RQVHGLL-CKAGLDTEKCIE-SALIDMYAKCGSITEAGKVFDKIS-NPDIVSWTAIISGY 603

Query: 243 QVHGNREIAVRSAKRV 258
             HG  E A++  +R+
Sbjct: 604 AQHGLVEDALQLFRRM 619



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 11/233 (4%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            YS+C        V+  +  RN  SW  +I G    G      K F EM  +GI  D F 
Sbjct: 164 VYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFA 223

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            ++I+ +   +   + GK +HA I   G+ +++FV   L+ MYA  G+I D+  VF+ M 
Sbjct: 224 YSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMT 283

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E + VSWN+++ GC  +G   EA  LF +M+     P+  T + V  A      ++ G +
Sbjct: 284 EHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKE 343

Query: 185 YFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAES-----FINSMSRNP 230
               ++N AS           TA++ +  + G L++A S     FIN     P
Sbjct: 344 ----VQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTP 392



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 79  KEGKQMHALIFKIGY-DSNVFVQ-NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
           +E K +H L+ K  + D ++ V  N    +Y+ C     A  VF  M +R++ SW  +++
Sbjct: 135 REAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIV 194

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG--LQYFYLMRNDAS 194
           G   HG   +  + F +M  + I PD   +  ++ +C     ++ G  +    +MR  A+
Sbjct: 195 GSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFAT 254

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
                    T+++ +  + G + ++    N M+ +   S + A++S C  +G    A   
Sbjct: 255 ----HIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVS-WNAMISGCTSNGLHLEAFDL 309

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKAT 279
             R+ +     P +Y L+S VSKA 
Sbjct: 310 FVRMKN-GACTPNMYTLVS-VSKAV 332


>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
 gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
          Length = 496

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/290 (39%), Positives = 175/290 (60%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +   +++SW A+I GF   G  ++A+ CF  M    ++ DY T+ ++V A   + 
Sbjct: 159 EVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLIAVVSACAEVG 218

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G  +H L+ + G + NV V N L+ MYA CG +  A +VF S+ +R +VSWNS+++
Sbjct: 219 ALGLGMWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHSIRKRTVVSWNSMIV 278

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A +G   EA++LFE+M++   KPD  T   VL+AC HAG  + GL+Y+ LM  +  + 
Sbjct: 279 GLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGIA 338

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
             R EHY  +V LLGRAG L+EA   + +M   P   V  ALL+ C++HG+ ++A +  +
Sbjct: 339 -ARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRMHGDLDMAEQLMQ 397

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            + +L P   A YVLLSN+  A   WD AG +R+LM  RG++K+PG+S V
Sbjct: 398 HLFELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGVKKRPGHSIV 447



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC        V+ S+R R  +SWN++I G    G   +A++ F EMR+ G   D  T+
Sbjct: 249 YARCGQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTL 308

Query: 66  TSIVGAIGVISGFKEGKQMHALI-FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           T ++ A       + G + + L+  + G  + +     +V +    G +++A  V  +M 
Sbjct: 309 TGVLTACSHAGLTEHGLRYYDLMTTEYGIAARMEHYGCVVDLLGRAGRLDEAMHVVETMP 368

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            R + V   +LL GC  HG    A QL + +   E+ P G    V+LS
Sbjct: 369 MRPNEVVLGALLAGCRMHGDLDMAEQLMQHL--FELDPGGDANYVLLS 414



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 43/88 (48%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           +V   N +V      G ++ A +VF  M   D VSW +L+ G   +G   EA+  F  M 
Sbjct: 137 SVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAML 196

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGL 183
              ++PD  T + V+SAC   G +  G+
Sbjct: 197 LDSVEPDYVTLIAVVSACAEVGALGLGM 224


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 186/304 (61%), Gaps = 4/304 (1%)

Query: 6   YSRCDSSL-DFQNVYSSVRTRNQISWNAIIAGFC-NLGSGEQALKCFSEMRQAGIDIDYF 63
           YS+C   + D + V+  +   + + WN +++G+  N    E AL+CF +M+  G   +  
Sbjct: 285 YSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDC 344

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSS 122
           +   ++ A   +S   +GKQ+H+L  K    SN + V N L+ MY+ CG + DA ++F  
Sbjct: 345 SFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDR 404

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E + VS NS++ G A HG   E++ LF+ M + +I P   TF+ VLSAC H G +++G
Sbjct: 405 MAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEG 464

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF +M+   ++EP  AEHY+ ++ LLGRAG L+EAE+ I  M  NPG   + +LL AC
Sbjct: 465 WNYFNMMKEKFNIEP-EAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGAC 523

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + HGN E+AV++A +VL L P++ A YV+LSN+  +   W++   +R  M +RG++KKPG
Sbjct: 524 RTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPG 583

Query: 303 YSWV 306
            SW+
Sbjct: 584 CSWI 587



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 128/249 (51%), Gaps = 8/249 (3%)

Query: 3   ILTYSRCDSSLDFQN--VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           +LTY   +  LD      Y     R+++SWN++I  +     G +AL  F EM + G+++
Sbjct: 179 LLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNV 238

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC-GAINDANKV 119
           D FT+ S++ A   +     G Q H  + K G+  N  V + L+ +Y+ C G ++D  KV
Sbjct: 239 DMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKV 298

Query: 120 FSSMDERDLVSWNSLLLGCAHH-GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           F  + E DLV WN+++ G + +  +  +A++ F QMQ    +P+  +F+ V+SAC +   
Sbjct: 299 FEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSS 358

Query: 179 IDKGLQYFYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
             +G Q   L +++D  +   R     A++ +  + G L +A    + M+ +   S+  +
Sbjct: 359 PSQGKQIHSLALKSD--IPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSL-NS 415

Query: 238 LLSACQVHG 246
           +++    HG
Sbjct: 416 MIAGYAQHG 424



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 99/188 (52%), Gaps = 11/188 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++    L    ++  +   + +S+N +I+ + + G    AL  FS MR+ G+D+D 
Sbjct: 81  IAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDX 140

Query: 63  FTITSIVGA----IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           FT+++++ A    +G+I       Q+H++    G+DS V V N L+  Y   G ++DA +
Sbjct: 141 FTLSAVITACCDDVGLIG------QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKR 194

Query: 119 VFSSMDE-RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           VF  M   RD VSWNS+++    H    +A+ LF++M +  +  D  T   VL+A     
Sbjct: 195 VFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLE 254

Query: 178 FIDKGLQY 185
            +  GLQ+
Sbjct: 255 DLSGGLQF 262



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 5/173 (2%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK +H+L  K     + +  N  + +Y+ CG +  A K F  + + ++ S+N+++   A 
Sbjct: 27  GKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAK 86

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRA 200
                 A QLF+Q+     +PD  ++  ++SA    G     L  F  MR +  L+    
Sbjct: 87  ESRPLIAHQLFDQIP----EPDLVSYNTLISAYADCGETAPALGLFSGMR-EMGLDMDXF 141

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
                I       G + +  S   S   +   SV  ALL+    +G+ + A R
Sbjct: 142 TLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKR 194



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 4/171 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C +  D + ++  +   N +S N++IAG+   G   ++L  F  M +  I    
Sbjct: 386 IAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTS 445

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T  S++ A       +EG    + +  K   +      + ++ +    G +++A  + +
Sbjct: 446 ITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIA 505

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            M      + W SLL  C  HG    AV+   Q+   +++P      VVLS
Sbjct: 506 RMPFNPGSIGWASLLGACRTHGNIELAVKAANQV--LQLEPSNAAPYVVLS 554


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 186/304 (61%), Gaps = 4/304 (1%)

Query: 6   YSRCDSSL-DFQNVYSSVRTRNQISWNAIIAGFC-NLGSGEQALKCFSEMRQAGIDIDYF 63
           YS+C   + D + V+  +   + + WN +++G+  N    E AL+CF +M+  G   +  
Sbjct: 285 YSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDC 344

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSS 122
           +   ++ A   +S   +GKQ+H+L  K    SN + V N L+ MY+ CG + DA ++F  
Sbjct: 345 SFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDR 404

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E + VS NS++ G A HG   E++ LF+ M + +I P   TF+ VLSAC H G +++G
Sbjct: 405 MAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEG 464

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF +M+   ++EP  AEHY+ ++ LLGRAG L+EAE+ I  M  NPG   + +LL AC
Sbjct: 465 WNYFNMMKEKFNIEP-EAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGAC 523

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + HGN E+AV++A +VL L P++ A YV+LSN+  +   W++   +R  M +RG++KKPG
Sbjct: 524 RTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPG 583

Query: 303 YSWV 306
            SW+
Sbjct: 584 CSWI 587



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 128/249 (51%), Gaps = 8/249 (3%)

Query: 3   ILTYSRCDSSLDFQN--VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           +LTY   +  LD      Y     R+++SWN++I  +     G +AL  F EM + G+++
Sbjct: 179 LLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNV 238

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC-GAINDANKV 119
           D FT+ S++ A   +     G Q H  + K G+  N  V + L+ +Y+ C G ++D  KV
Sbjct: 239 DMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKV 298

Query: 120 FSSMDERDLVSWNSLLLGCAHH-GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           F  + E DLV WN+++ G + +  +  +A++ F QMQ    +P+  +F+ V+SAC +   
Sbjct: 299 FEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSS 358

Query: 179 IDKGLQYFYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
             +G Q   L +++D  +   R     A++ +  + G L +A    + M+ +   S+  +
Sbjct: 359 PSQGKQIHSLALKSD--IPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSL-NS 415

Query: 238 LLSACQVHG 246
           +++    HG
Sbjct: 416 MIAGYAQHG 424



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 99/188 (52%), Gaps = 11/188 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++    L    ++  +   + +S+N +I+ + + G    AL  FS MR+ G+D+D 
Sbjct: 81  IAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDG 140

Query: 63  FTITSIVGA----IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           FT+++++ A    +G+I       Q+H++    G+DS V V N L+  Y   G ++DA +
Sbjct: 141 FTLSAVITACCDDVGLIG------QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKR 194

Query: 119 VFSSMDE-RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           VF  M   RD VSWNS+++    H    +A+ LF++M +  +  D  T   VL+A     
Sbjct: 195 VFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLE 254

Query: 178 FIDKGLQY 185
            +  GLQ+
Sbjct: 255 DLSGGLQF 262



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%)

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           D NVF  N ++  YA       A+++F  + E DLVS+N+L+   A  G +  A+ LF  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 154 MQKTEIKPDGTTFLVVLSACC 174
           M++  +  DG T   V++ACC
Sbjct: 131 MREMGLDMDGFTLSAVITACC 151



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 4/171 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C +  D + ++  +   N +S N++IAG+   G   ++L  F  M +  I    
Sbjct: 386 IAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTS 445

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T  S++ A       +EG    + +  K   +      + ++ +    G +++A  + +
Sbjct: 446 ITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIA 505

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            M      + W SLL  C  HG    AV+   Q+   +++P      VVLS
Sbjct: 506 RMPFNPGSIGWASLLGACRTHGNIELAVKAANQV--LQLEPSNAAPYVVLS 554


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 178/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C        ++  +  +N  +WNAI++   + G GE+ALK   +MR  GI +D 
Sbjct: 503 ITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQ 562

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F+ +     IG ++   EG+Q+H+LI K G++SN +V N  + MY  CG I+D  ++   
Sbjct: 563 FSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQ 622

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              R   SWN L+   A HG+ ++A + F +M    ++PD  TF+ +LSAC H G +D+G
Sbjct: 623 PRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEG 682

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L YF  M     + P   EH   I+ LLGRAG L EAE+FIN M   P   V+++LL+AC
Sbjct: 683 LAYFSSMSTKFGV-PTGIEHCVCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSLLAAC 741

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN E+A ++A R+ +L  +D + YVL SNV  +T  W D  ++R  M +  I+KKP 
Sbjct: 742 KIHGNLELARKAADRLFELDSSDDSAYVLYSNVCASTRRWRDVENVRKQMESHNIKKKPA 801

Query: 303 YSWV 306
            SWV
Sbjct: 802 CSWV 805



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 21/226 (9%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +  CDS  +   V+  ++ R+ ISWN+II    + G  E++L+ FS+MR      DY
Sbjct: 202 ISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDY 261

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            TI++++   G     + G+ +H ++ K G +SNV V N L+ MY+  G   DA  VF  
Sbjct: 262 ITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHK 321

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--------C 174
           M ERDL+SWNS++     +G    A++L  +M +T    +  TF   LSAC         
Sbjct: 322 MRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETLKIV 381

Query: 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220
           HA  I  GL +  ++ N             A+V + G+ G +  A+
Sbjct: 382 HAFVILLGLHHNLIIGN-------------ALVTMYGKFGSMAAAQ 414



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 126/277 (45%), Gaps = 34/277 (12%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +  S    Q V   +  R++++WNA+I G  +      A++ F+ +R+ G+ ++Y
Sbjct: 401 VTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNY 460

Query: 63  FTITSIVGA-IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            TI +++ A +        G  +HA I   G++   FVQ+ L+ MYA CG +N +N +F 
Sbjct: 461 ITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFD 520

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            +  ++  +WN++L   AH+G   EA++L  +M+   I  D  +F V  +   +   +D+
Sbjct: 521 VLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDE 580

Query: 182 GLQYFYLM------RNDASLEP--------------------PRA---EHYTAIVGLLGR 212
           G Q   L+       ND  L                      PR+     +  ++  L R
Sbjct: 581 GQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALAR 640

Query: 213 AGFLNEAESFINSM---SRNPGPSVYKALLSACQVHG 246
            GF  +A    + M      P    + +LLSAC  HG
Sbjct: 641 HGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACS-HG 676



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 84/156 (53%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +   N +SW +++ G+   G  ++ +  +  +R+ G+  +   + +++ + GV+  
Sbjct: 116 VFKEIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVD 175

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G Q+   + K G D+ V V N L+ M+  C +I +A+ VF  M ERD +SWNS++  
Sbjct: 176 KMLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITA 235

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
             H+G+  ++++ F QM+ T  K D  T   +L  C
Sbjct: 236 SVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVC 271



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 119/245 (48%), Gaps = 4/245 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+  S    Q+V+  +  RN+ SWN +++GF  +G  ++A++ F  M + G+    +  
Sbjct: 2   YSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVA 61

Query: 66  TSIVGAIGVISGFKEGK-QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            S+V A        EG  Q+HA + K G   +VFV   L+  Y   G + + + VF  ++
Sbjct: 62  ASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIE 121

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E ++VSW SL++G A++G  +E + ++ ++++  +  +      V+ +C     +DK L 
Sbjct: 122 EPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSC--GVLVDKMLG 179

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           Y  L     S          +++ + G    + EA    + M      S + ++++A   
Sbjct: 180 YQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTIS-WNSIITASVH 238

Query: 245 HGNRE 249
           +G+ E
Sbjct: 239 NGHCE 243



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 126/250 (50%), Gaps = 9/250 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+   S D + V+  +R R+ ISWN+++A   + G+  +AL+   EM Q     +Y T 
Sbjct: 306 YSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTF 365

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+   A+      +  K +HA +  +G   N+ + N LV MY   G++  A +V   M +
Sbjct: 366 TT---ALSACYNLETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPD 422

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA-GFIDKGLQ 184
           RD V+WN+L+ G A +     A++ F  +++  +  +  T + +LSA       +D G+ 
Sbjct: 423 RDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMP 482

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            + +++     LE       ++++ +  + G LN + ++I  +  N   S + A+LSA  
Sbjct: 483 IHAHIVVAGFELETFVQ---SSLITMYAQCGDLNTS-NYIFDVLANKNSSTWNAILSANA 538

Query: 244 VHGNREIAVR 253
            +G  E A++
Sbjct: 539 HYGPGEEALK 548



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%)

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
           MY+  G+I  A  VF  M ER+  SWN+L+ G    G+ ++A+Q F  M +  ++P    
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 166 FLVVLSACCHAGFIDKG 182
              +++AC  +G + +G
Sbjct: 61  AASLVTACDRSGCMTEG 77


>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 527

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 116/290 (40%), Positives = 174/290 (60%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +   +++SW A+I G    G  ++A+ CF  M   G++ DY T+ +++ A   + 
Sbjct: 191 EVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVG 250

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G  +H L+ + G + NV + N L+ MYA CG +  A +VFS M +R +VSWNS+++
Sbjct: 251 ALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIV 310

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A +G   +AV+ FE M++   KPD  TF  VL+AC H G  D+GL+Y+ LMR +  + 
Sbjct: 311 GFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIA 370

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
             R EHY  +V LLGR+G L EA   + +M   P   V  ALL+ C++HG+  +A +  +
Sbjct: 371 -ARMEHYGCVVDLLGRSGQLEEAMRVVTTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQ 429

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +L+L P   A YVLLSN+  A   WD AG +R+LM  RG+RK+PGYS V
Sbjct: 430 HLLELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGLRKRPGYSAV 479



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 4/171 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+RC      + V+S +R R  +SWN++I GF   G    A++ F  MR+ G   D 
Sbjct: 278 IDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDA 337

Query: 63  FTITSIVGAIGVISGFKEGKQMHALI-FKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T T ++ A        EG + + L+  + G  + +     +V +    G + +A +V +
Sbjct: 338 VTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVVT 397

Query: 122 SMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           +M  R + V   +LL GC  HG    A QL + +   E+ P G    V+LS
Sbjct: 398 TMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQHL--LELDPGGDANYVLLS 446



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G +  A +VF  M   D VSW +L+ GC  +G   EA+  F  M    ++PD  T + V+
Sbjct: 184 GLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIAVI 243

Query: 171 SACCHAGFIDKGL 183
           SAC   G +  G+
Sbjct: 244 SACAEVGALGLGM 256


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 179/301 (59%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC        V+  + ++N +SWNA+I+GF   G GE AL  F+EM++ G +  +FT 
Sbjct: 197 YARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTY 256

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI   +  I   ++GK +HA + K       FV N ++ MYA  G++ DA KVF  +  
Sbjct: 257 SSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLN 316

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +DLV+WNS+L   A +G  +EAV  FE+M+K+ I  +  TFL +L+AC H G + +G  Y
Sbjct: 317 KDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHY 376

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +++ + +LE P  EHY  +V LLGRAG LN A  FI  M   P  +V+ ALL+AC++H
Sbjct: 377 FDMIK-EYNLE-PEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMH 434

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++   +A  V  L P+D    VLL N+  +T  WD A  +R +M   G++K+P  SW
Sbjct: 435 KNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSW 494

Query: 306 V 306
           V
Sbjct: 495 V 495



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 93/180 (51%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S ++   V+  +R ++ +SW ++IAG+       +A+     M +     + 
Sbjct: 93  IHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNG 152

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++ A G  +    G Q+HAL  K  +  +V+V + L+ MYA CG ++ A  VF  
Sbjct: 153 FTFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDK 212

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +D ++ VSWN+L+ G A  G    A+ +F +MQ+   +    T+  + S     G +++G
Sbjct: 213 LDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQG 272



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 7/175 (4%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           + +++H  +    ++ + F+ N L+ +Y  CG++ +A+KVF  M ++D+VSW SL+ G A
Sbjct: 69  DARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYA 128

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL--QYFYLMRNDASLEP 197
            +    EA+ L   M K   KP+G TF  +L A     + D G+  Q   L       E 
Sbjct: 129 QNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAA--GAYADSGIGGQIHALAVKCDWHED 186

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
                 +A++ +  R G ++ A +  + +    G S + AL+S     G+ E A+
Sbjct: 187 VYVG--SALLDMYARCGKMDMATAVFDKLDSKNGVS-WNALISGFARKGDGETAL 238


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 179/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y +C    D + ++      + +S+ ++I  +   G GE+ALK F EM+   +  D 
Sbjct: 502 IDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDR 561

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F  +S++ A   +S F++GKQ+H  I K G+  ++F  N LV MYA CG+I+DA + FS 
Sbjct: 562 FVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSE 621

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ER +VSW++++ G A HG+ R+A+QLF QM K  + P+  T + VL AC HAG + + 
Sbjct: 622 LTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEA 681

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF  M      +P + EHY  ++ LLGRAG +NEA   +N M      SV+ ALL A 
Sbjct: 682 KLYFESMEELFGFKPMQ-EHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAA 740

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H + E+  R+A+ +  L P     +VLL+N+  +   W++  ++R LM +  ++K+PG
Sbjct: 741 RIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPG 800

Query: 303 YSWV 306
            SW+
Sbjct: 801 MSWI 804



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 108/191 (56%), Gaps = 1/191 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ Y++CD  LD + ++  +  RN +SWNA+ + +  +    +A+  F EM  +GI  + 
Sbjct: 199 VVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNE 258

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F+++S+V A   +     GK +H  + K+GYD + F  N LV MYA  G + DA  VF  
Sbjct: 259 FSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEK 318

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + + D+VSWN+++ GC  H +  +A++L  QM+++ I P+  T    L AC   G  + G
Sbjct: 319 IKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELG 378

Query: 183 LQ-YFYLMRND 192
            Q +  LM+ D
Sbjct: 379 RQLHSSLMKMD 389



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 130/249 (52%), Gaps = 5/249 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C +    + +       + +SW+A+I+G+   G G  AL  F EM   G+  + FT 
Sbjct: 101 YSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTF 160

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A  ++   + GKQ+H ++   G++ +VFV N LV MYA C    D+ ++F  + E
Sbjct: 161 SSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPE 220

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           R++VSWN+L        +  EAV LF +M  + IKP+  +   +++AC       +G + 
Sbjct: 221 RNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKII 280

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + YL++     +P  A    A+V +  + G L +A S    + + P    + A+++ C +
Sbjct: 281 HGYLIKLGYDWDPFSA---NALVDMYAKVGDLADAISVFEKI-KQPDIVSWNAVIAGCVL 336

Query: 245 HGNREIAVR 253
           H + E A+ 
Sbjct: 337 HEHHEQALE 345



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 141/276 (51%), Gaps = 7/276 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+CD   D +  ++ +  ++ I+WNAII+G+       +AL  F EM + GI  +  T+
Sbjct: 404 YSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTL 463

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++I+ +   +      +Q+H L  K G+ S+++V N L+  Y  C  + DA ++F     
Sbjct: 464 STILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTI 523

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            DLVS+ S++   A +G   EA++LF +MQ  E+KPD      +L+AC +    ++G Q 
Sbjct: 524 GDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQL 583

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + ++++    L+        ++V +  + G +++A    + ++   G   + A++     
Sbjct: 584 HVHILKYGFVLDIFAG---NSLVNMYAKCGSIDDAGRAFSELTER-GIVSWSAMIGGLAQ 639

Query: 245 HGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
           HG+   A++   ++L   + PN   +  +L   + A
Sbjct: 640 HGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHA 675



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 130/254 (51%), Gaps = 15/254 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     D  +V+  ++  + +SWNA+IAG       EQAL+   +M+++GI  + FT+
Sbjct: 303 YAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTL 362

Query: 66  TSIVGAIGVISGFKE-GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +S + A   + G KE G+Q+H+ + K+  +S++FV   LV MY+ C  + DA   F+ + 
Sbjct: 363 SSALKACAGM-GLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLP 421

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E+DL++WN+++ G + +    EA+ LF +M K  I  + TT   +L +         GLQ
Sbjct: 422 EKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTA-------GLQ 474

Query: 185 YFYLMRNDASLEPPRAEH-----YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
             ++ R    L      H       +++   G+   + +AE      +     S + +++
Sbjct: 475 VVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVS-FTSMI 533

Query: 240 SACQVHGNREIAVR 253
           +A   +G  E A++
Sbjct: 534 TAYAQYGQGEEALK 547



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 5/121 (4%)

Query: 58  IDIDYFTITSI-----VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           ID   FT TS+     +         + G Q+HA I K G   +  ++N L+ +Y+ C  
Sbjct: 47  IDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRN 106

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
              A K+     E DLVSW++L+ G A +G    A+  F +M    +K +  TF  VL A
Sbjct: 107 FGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKA 166

Query: 173 C 173
           C
Sbjct: 167 C 167


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 179/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y +C    D + ++      + +S+ ++I  +   G GE+ALK F EM+   +  D 
Sbjct: 475 IDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDR 534

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F  +S++ A   +S F++GKQ+H  I K G+  ++F  N LV MYA CG+I+DA + FS 
Sbjct: 535 FVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSE 594

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ER +VSW++++ G A HG+ R+A+QLF QM K  + P+  T + VL AC HAG + + 
Sbjct: 595 LTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEA 654

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF  M      +P + EHY  ++ LLGRAG +NEA   +N M      SV+ ALL A 
Sbjct: 655 KLYFESMEELFGFKPMQ-EHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAA 713

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H + E+  R+A+ +  L P     +VLL+N+  +   W++  ++R LM +  ++K+PG
Sbjct: 714 RIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPG 773

Query: 303 YSWV 306
            SW+
Sbjct: 774 MSWI 777



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 129/249 (51%), Gaps = 5/249 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + +       + +SW+A+I+G+   G G  AL  F EM   G+  + FT 
Sbjct: 101 YSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTF 160

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A  ++   + GKQ+H ++   G++ +VFV N LV MYA C    D+ ++F  + E
Sbjct: 161 SSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPE 220

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           R++VSWN+L        +  EAV LF +M  + IKP+  +   +++AC       +G + 
Sbjct: 221 RNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKII 280

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + YL++     +P  A    A+V +  + G L +A S    + + P    + A+++ C +
Sbjct: 281 HGYLIKLGYDWDPFSA---NALVDMYAKVGDLADAISVFEKI-KQPDIVSWNAVIAGCVL 336

Query: 245 HGNREIAVR 253
           H + E A+ 
Sbjct: 337 HEHHEQALE 345



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 141/276 (51%), Gaps = 7/276 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+CD   D +  ++ +  ++ I+WNAII+G+       +AL  F EM + GI  +  T+
Sbjct: 377 YSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTL 436

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++I+ +   +      +Q+H L  K G+ S+++V N L+  Y  C  + DA ++F     
Sbjct: 437 STILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTI 496

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            DLVS+ S++   A +G   EA++LF +MQ  E+KPD      +L+AC +    ++G Q 
Sbjct: 497 GDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQL 556

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + ++++    L+        ++V +  + G +++A    + ++   G   + A++     
Sbjct: 557 HVHILKYGFVLDIFAG---NSLVNMYAKCGSIDDAGRAFSELTER-GIVSWSAMIGGLAQ 612

Query: 245 HGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
           HG+   A++   ++L   + PN   +  +L   + A
Sbjct: 613 HGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHA 648



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 90/154 (58%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ Y++CD  LD + ++  +  RN +SWNA+ + +       +A+  F EM  +GI  + 
Sbjct: 199 VVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNE 258

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F+++S+V A   +     GK +H  + K+GYD + F  N LV MYA  G + DA  VF  
Sbjct: 259 FSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEK 318

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
           + + D+VSWN+++ GC  H +  +A++L  QM++
Sbjct: 319 IKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR 352



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 113/253 (44%), Gaps = 40/253 (15%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     D  +V+  ++  + +SWNA+IAG       EQAL+   +M+           
Sbjct: 303 YAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK----------- 351

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
                           +Q+H+ + K+  +S++FV   LV MY+ C  + DA   F+ + E
Sbjct: 352 ----------------RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPE 395

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +DL++WN+++ G + +    EA+ LF +M K  I  + TT   +L +         GLQ 
Sbjct: 396 KDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTA-------GLQV 448

Query: 186 FYLMRNDASLEPPRAEH-----YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
            ++ R    L      H       +++   G+   + +AE      +     S + ++++
Sbjct: 449 VHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVS-FTSMIT 507

Query: 241 ACQVHGNREIAVR 253
           A   +G  E A++
Sbjct: 508 AYAQYGQGEEALK 520



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 10/139 (7%)

Query: 45  QALKCFSEMRQAG-----IDIDYFTITSI-----VGAIGVISGFKEGKQMHALIFKIGYD 94
           Q +  FSE  Q       ID   FT TS+     +         + G Q+HA I K G  
Sbjct: 29  QTVPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLS 88

Query: 95  SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
            +  ++N L+ +Y+ C     A K+     E DLVSW++L+ G A +G    A+  F +M
Sbjct: 89  DDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEM 148

Query: 155 QKTEIKPDGTTFLVVLSAC 173
               +K +  TF  VL AC
Sbjct: 149 HLLGVKCNEFTFSSVLKAC 167


>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
 gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
          Length = 438

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 116/290 (40%), Positives = 174/290 (60%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +   +++SW A+I G    G  ++A+ CF  M   G++ DY T+ +++ A   + 
Sbjct: 102 EVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVG 161

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G  +H L+ + G + NV + N L+ MYA CG +  A +VFS M +R +VSWNS+++
Sbjct: 162 ALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIV 221

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A +G   +AV+ FE M++   KPD  TF  VL+AC H G  D+GL+Y+ LMR +  + 
Sbjct: 222 GFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIA 281

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
             R EHY  +V LLGR+G L EA   + +M   P   V  ALL+ C++HG+  +A +  +
Sbjct: 282 -ARMEHYGCVVDLLGRSGQLEEAMRVVTTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQ 340

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +L+L P   A YVLLSN+  A   WD AG +R+LM  RG+RK+PGYS V
Sbjct: 341 HLLELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGLRKRPGYSAV 390



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC      + V+S +R R  +SWN++I GF   G    A++ F  MR+ G   D  T 
Sbjct: 192 YARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTF 251

Query: 66  TSIVGAIGVISGFKEGKQMHALI-FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           T ++ A        EG + + L+  + G  + +     +V +    G + +A +V ++M 
Sbjct: 252 TGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVVTTMP 311

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            R + V   +LL GC  HG    A QL + +   E+ P G    V+LS
Sbjct: 312 MRPNEVVLGALLAGCRMHGDVGMAEQLMQHL--LELDPGGDANYVLLS 357



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G +  A +VF  M   D VSW +L+ GC  +G   EA+  F  M    ++PD  T + V+
Sbjct: 95  GLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIAVI 154

Query: 171 SACCHAGFIDKGL 183
           SAC   G +  G+
Sbjct: 155 SACAEVGALGLGM 167


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 180/301 (59%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC        V+  + ++N +SWNA+I+GF   G GE AL  F+EM++ G +  +FT 
Sbjct: 197 YARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTY 256

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI  A+  I   ++GK +HA + K       FV N ++ MYA  G++ DA KVF  +  
Sbjct: 257 SSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLN 316

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +DLV+WNS+L   A +G  +EAV  FE+M+K+ I  +  +FL +L+AC H G + +G  Y
Sbjct: 317 KDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHY 376

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +++ + +LE P  EHY  +V LLGRAG LN A  FI  M   P  +V+ ALL+AC++H
Sbjct: 377 FDMIK-EYNLE-PEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMH 434

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++   +A  V  L P+D    VLL N+  +T  WD A  +R +M   G++K+P  SW
Sbjct: 435 KNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSW 494

Query: 306 V 306
           V
Sbjct: 495 V 495



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 95/180 (52%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S ++   V+  +R ++ +SW ++IAG+       +A+     M +     + 
Sbjct: 93  IHLYCKCGSVVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNG 152

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++ A+G  +    G Q+HAL  K  +  +V+V + L+ MYA CG ++ A  VF  
Sbjct: 153 FTFASLLKAVGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDK 212

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +D ++ VSWN+L+ G A  G    A+ +F +MQ+   +    T+  + SA    G +++G
Sbjct: 213 LDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQG 272



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           + +++HA +    +  + F+ N L+ +Y  CG++ +A+KVF  M  +D+VSW SL+ G A
Sbjct: 69  DARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKDMVSWTSLIAGYA 128

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            +    EA+ L   M K   KP+G TF  +L A     + D G+
Sbjct: 129 QNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAV--GAYADSGI 170


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/300 (38%), Positives = 181/300 (60%), Gaps = 5/300 (1%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID-YFTIT 66
           R D +L+   ++ S+  R   +W A+I+GF   G    A+K F +MR+ G+ ID  F ++
Sbjct: 186 RSDEALE---LFRSMPGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLS 242

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
           S +G    ++    G+Q+H+L  ++G+ S++ V N +V MY+ C  I+ A +VF  +  R
Sbjct: 243 SAIGGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGR 302

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
           D++SW ++L+G A HG + EA  L+++M    +KP+  TF+ ++ AC HAG + KG Q F
Sbjct: 303 DIISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLF 362

Query: 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
             M+ +  +  PR +HYT  + LL R+G L EAE  I +M   P  + + +LLSAC+ + 
Sbjct: 363 DSMKGEYGIN-PRLQHYTCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYN 421

Query: 247 NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           N E+++R A  +L+L P  P+ YVLLSNV      WD    +R LM +  IRK+PGYSW+
Sbjct: 422 NAEMSIRVADNLLELRPKYPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWI 481



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 9/195 (4%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GID 59
           L +  Y++     D + ++     R+   +++++A   +  S E  L     M  A  + 
Sbjct: 43  LLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHSESPELVLPLLRRMLSADALR 102

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            D+F + SI  A   +     GKQ+H       Y S+  V++ L+ MY  CG  +DA KV
Sbjct: 103 PDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKV 162

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF--LVVLSACCHAG 177
           F S+  ++ V W +L+ G   +G S EA++LF  M      P  T F    ++S    +G
Sbjct: 163 FDSIVAKNSVMWTALISGYVLNGRSDEALELFRSM------PGRTLFAWTALISGFVRSG 216

Query: 178 FIDKGLQYFYLMRND 192
                ++ F  MR D
Sbjct: 217 ESVSAVKLFVDMRRD 231



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 79/169 (46%), Gaps = 6/169 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + V+  +  R+ ISW  ++ G    G  E+A   +  M  AG+  +  T 
Sbjct: 283 YSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPNEVTF 342

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI--CGAINDANKVFSSM 123
             ++ A       ++G+Q+   + K  Y  N  +Q+   ++  +   G + +A ++ ++M
Sbjct: 343 VGLIYACSHAGLVQKGRQLFDSM-KGEYGINPRLQHYTCYLDLLSRSGHLAEAEELITTM 401

Query: 124 DE-RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
               D  +W SLL  C  +  +  ++++ + +   E++P   +  V+LS
Sbjct: 402 PYVPDEATWASLLSACKKYNNAEMSIRVADNL--LELRPKYPSTYVLLS 448


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/291 (39%), Positives = 173/291 (59%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R  ++WNA+IAG+   G  E  L+ F  M + G+  +  ++TS++     +
Sbjct: 217 ERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNL 276

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S  + GKQ+H L+ K    S+      LV MY+ CG + DA ++F  +  +D+V WN+++
Sbjct: 277 SALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMI 336

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG  ++A++LF++M+K  +KPD  TF+ VL AC HAG +D G+QYF  MR D  +
Sbjct: 337 SGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGI 396

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           E  + EHY  +V LLGRAG L+EA   I SM   P P++Y  LL AC++H N  +A  +A
Sbjct: 397 E-TKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAA 455

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           K +L+L P     YV L+NV  A + WD    IR  M +  + K PGYSW+
Sbjct: 456 KNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWI 506



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 106/245 (43%), Gaps = 21/245 (8%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D +  + S+  ++  SWN +I+    +G   +A + FS M +           + V    
Sbjct: 122 DARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPE----------KNCVSWSA 171

Query: 74  VISGFKEGKQMHALI--FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
           ++SG+     + A +  F      +V     ++  Y   G +  A ++F  M  R LV+W
Sbjct: 172 MVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTW 231

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
           N+++ G   +G + + ++LF  M +T +KP+  +   VL  C +   +  G Q   L+  
Sbjct: 232 NAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLV-- 289

Query: 192 DASLEPPRAEHYTA---IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
               + P +   TA   +V +  + G L +A      + R      + A++S    HG  
Sbjct: 290 ---CKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRK-DVVCWNAMISGYAQHGAG 345

Query: 249 EIAVR 253
           + A+R
Sbjct: 346 KKALR 350



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 118/297 (39%), Gaps = 54/297 (18%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D   ++  +  ++ + WNA+I+G+   G+G++AL+ F EM++ G+  D+ T 
Sbjct: 308 YSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITF 367

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A             HA +  +G     F   R  F       I    + ++ M +
Sbjct: 368 VAVLLACN-----------HAGLVDLGV--QYFNTMRRDF------GIETKPEHYACMVD 408

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
                    LLG A  G   EAV L + M     KP    +  +L AC     I K L  
Sbjct: 409 ---------LLGRA--GKLSEAVDLIKSM---PFKPHPAIYGTLLGAC----RIHKNLNL 450

Query: 186 F-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-----PGPSVYKALL 239
             +  +N   L+P  A  Y  +  +       +   S   SM  N     PG   Y  + 
Sbjct: 451 AEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPG---YSWIE 507

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
               VHG      RS+ R   L P   +I+  L ++ K         D+  ++++ G
Sbjct: 508 INSVVHG-----FRSSDR---LHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVG 556



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 12/160 (7%)

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH-GYSREAVQLFE 152
           ++NV   N+L+  Y  CG I+ A +VF  M  +  V+WNS+L   A   G+   A QLFE
Sbjct: 38  NNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFE 97

Query: 153 QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGR 212
           ++     +P+  ++ ++L+   H   +     +F       S+       +  ++  L +
Sbjct: 98  KIP----QPNTVSYNIMLACHWHHLGVHDARGFF------DSMPLKDVASWNTMISALAQ 147

Query: 213 AGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            G + EA    ++M      S + A++S     G+ + AV
Sbjct: 148 VGLMGEARRLFSAMPEKNCVS-WSAMVSGYVACGDLDAAV 186


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/301 (38%), Positives = 179/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   V+  +   + ISWN+IIAG    G  ++ LK F +M  A I  ++ + 
Sbjct: 281 YAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSF 340

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+ A   ++    GKQ+H  I +  +D NVF+ + LV MYA CG I  A  +F  M+ 
Sbjct: 341 SSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMEL 400

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VSW ++++G A HG++ +A+ LF++M+   +KP+   F+ VL+AC HAG +D+  +Y
Sbjct: 401 YDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKY 460

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  +  P  EHY A+  LLGR G L EA  FI+ M   P  SV+  LL+AC+VH
Sbjct: 461 FNSMTQDYRI-IPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVH 519

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+A + +K++  + P +   YVLLSN+  A   W DA  +R  M ++G++KKP  SW
Sbjct: 520 KNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSW 579

Query: 306 V 306
           +
Sbjct: 580 I 580



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 136/267 (50%), Gaps = 7/267 (2%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
            + V+  +  R+ +SWN +I+G    G  E AL    EM  A +  D FT++S++     
Sbjct: 189 LRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAE 248

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
                +GK++H    + GYD++VF+ + L+ MYA C  ++D+ +VF  + + D +SWNS+
Sbjct: 249 YVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSI 308

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDA 193
           + GC  +G   E ++ F+QM   +IKP+  +F  ++ AC H   +  G Q + Y++R+  
Sbjct: 309 IAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRF 368

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
                 A   +A+V +  + G +  A    + M      S + A++    +HG+   A+ 
Sbjct: 369 DGNVFIA---SALVDMYAKCGNIRTARWIFDKMELYDMVS-WTAMIMGYALHGHAYDAIS 424

Query: 254 SAKR--VLDLWPNDPAIYVLLSNVSKA 278
             KR  V  + PN  A   +L+  S A
Sbjct: 425 LFKRMEVEGVKPNYVAFMAVLTACSHA 451



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 32/190 (16%)

Query: 10  DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIV 69
           DS L F ++ S   T   ++W +II  + + G    +L  F +M  +G   D+    S++
Sbjct: 57  DSLLIFNSLPSPPTT---LAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVL 113

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN------------ 117
            +  ++   + G+ +H  I ++G   +++  N L+ MY+   ++ + N            
Sbjct: 114 KSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTS 173

Query: 118 -----------------KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
                            KVF  M +RD+VSWN+++ G A +G   +A+ +  +M   +++
Sbjct: 174 DVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLR 233

Query: 161 PDGTTFLVVL 170
           PD  T   VL
Sbjct: 234 PDSFTLSSVL 243


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 183/304 (60%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+RC    +    +  +  +N ISWN++++G    G  E+AL+ F  M +   +++ 
Sbjct: 606 ISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNM 665

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S + A   ++  K+G+Q+H+++ K GYDS   V N L+ +YA  G+I+DA + F+ 
Sbjct: 666 FTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFND 725

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER+++SWN+++ G + HG   EA++LFE+M+   I P+  TF+ VLSAC H G + +G
Sbjct: 726 MSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEG 785

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L YF  M     L  P++EHY  +V LLGRAG L+ A  +I  M       +++ LLSAC
Sbjct: 786 LDYFESMFKIHDL-VPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSAC 844

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            +H N EI  R+A  +L+L P D A YVL+SN+   +  W      R LM +RG++K+PG
Sbjct: 845 VIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPG 904

Query: 303 YSWV 306
            SW+
Sbjct: 905 RSWI 908



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 101/169 (59%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V++ +  ++ ++W A+I+G    G  E+A+  F +M  + I    + ++S++ A   I
Sbjct: 215 KKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKI 274

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             F+ G+Q+H L+ K G+ S  +V N LV +Y+    +  A ++FS+M+ RD VS+NSL+
Sbjct: 275 QLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLI 334

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G    G+S  A++LF +MQ+  +KPD  T   +LSAC   G + KG+Q
Sbjct: 335 SGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQ 383



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 126/251 (50%), Gaps = 5/251 (1%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SW A+IAG+       +AL+ F EM   GI  D     S + A   I   ++G+Q+HA 
Sbjct: 530 VSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQ 589

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
            +  G+ +++ + N L+ +YA CG I +A   F  + +++ +SWNSL+ G A  GY  EA
Sbjct: 590 SYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEA 649

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           +Q+F +M +TE + +  T+   +SA      I +G Q  + M      +  R E   +++
Sbjct: 650 LQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQG-QQIHSMVLKTGYDSER-EVSNSLI 707

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR--SAKRVLDLWPND 265
            L  ++G +++A    N MS     S + A+++    HG    A+R     +V  + PN 
Sbjct: 708 SLYAKSGSISDAWREFNDMSERNVIS-WNAMITGYSQHGCGMEALRLFEEMKVCGIMPNH 766

Query: 266 PAIYVLLSNVS 276
                +LS  S
Sbjct: 767 VTFVGVLSACS 777



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 89/179 (49%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C         + +  T N + WN ++  +  L +   + + F +M+  G+  + FT 
Sbjct: 407 YSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTY 466

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+     +     G+Q+H  + K G+  NV+V + L+ MYA  G +  A ++   + E
Sbjct: 467 PSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPE 526

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            D+VSW +++ G   H    EA+QLFE+M+   I+ D   F   +SAC     + +G Q
Sbjct: 527 DDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQ 585



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 98/182 (53%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YSR    +  + ++S++ +R+ +S+N++I+G    G  ++AL+ F++M++  +  D 
Sbjct: 303 VALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDC 362

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ A   +    +G Q+H+   K G  +++ ++  L+ +Y+ C  +  A+K F +
Sbjct: 363 ITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLT 422

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            +  ++V WN +L+         ++ ++F QMQ   + P+  T+  +L  C   G +  G
Sbjct: 423 TETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLG 482

Query: 183 LQ 184
            Q
Sbjct: 483 EQ 484



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 8/232 (3%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA-IGVIS 76
           V+     R+  SWN +I  F    S  Q    F  M   GI  + +T   ++ A +G   
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDI 174

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            F   KQ+H+  F  G+DS+  V N L+ +Y+  G I  A KVF+ +  +D+V+W +++ 
Sbjct: 175 AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMIS 234

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G + +G   EA+ LF  M  +EI P       VLSA       + G Q   L+       
Sbjct: 235 GLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGF-- 292

Query: 197 PPRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
              +E Y    +V L  R+  L  AE   ++M+   G S Y +L+S     G
Sbjct: 293 --HSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVS-YNSLISGLVQQG 341



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 43/94 (45%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           E  ++H  I K G+D    + + LV  Y   G  + A KVF     R + SWN ++    
Sbjct: 76  ETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFV 135

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
               + +   LF +M    I P+G TF  VL AC
Sbjct: 136 AQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKAC 169


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 123/304 (40%), Positives = 172/304 (56%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           + TYS+C +    + V+  +  RN  +W  +I G    G G  A   F +M + GI  D 
Sbjct: 666 VHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDA 725

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  SI+ A       +  K++H      G  S++ V N LV MYA CG+I+DA  VF  
Sbjct: 726 TTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDD 785

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ERD+ SW  ++ G A HG   EA+  F +M+    KP+G +++ VL+AC HAG +D+G
Sbjct: 786 MVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEG 845

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + F  M  D  +EP   EHYT +V LLGRAG L EAE FI +M   P  + + ALL AC
Sbjct: 846 RRQFLSMTQDYGIEPT-MEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGAC 904

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
             +GN E+A  +AK  L L P   + YVLLSN+  AT  W+    +R++M  +GIRK+PG
Sbjct: 905 VTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPG 964

Query: 303 YSWV 306
            SW+
Sbjct: 965 RSWI 968



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 125/272 (45%), Gaps = 32/272 (11%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y RC      + V+  +  +N   W  +I G+   G  E A++ + +MRQ     +  T
Sbjct: 162 VYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEIT 221

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             SI+ A       K GK++HA I + G+ S+V V+  LV MY  CG+I DA  +F  M 
Sbjct: 222 YLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMV 281

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID---- 180
           ER+++SW  ++ G AH+G  +EA  LF QMQ+    P+  T++ +L+A   AG ++    
Sbjct: 282 ERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKE 341

Query: 181 ---------------KGLQYFYLMRNDASLEPPRAE----------HYTAIVGLLGRAGF 215
                           G    ++     S++  R             +T ++G L + G 
Sbjct: 342 VHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGR 401

Query: 216 LNEAESFINSMSRN---PGPSVYKALLSACQV 244
             EA S    M RN   P  + Y ++L+A  +
Sbjct: 402 GQEAFSLFLQMQRNGCLPNLTTYLSILNASAI 433



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 127/280 (45%), Gaps = 35/280 (12%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S  D + V+  +  R+ ISWNA++ G    G G +A   F +M+Q G+  D 
Sbjct: 465 IHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDS 524

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S++   G     +   ++H    + G  S+  V +  + MY  CG+I+DA  +F  
Sbjct: 525 TTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDK 584

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--------- 173
           +  R + +WN+++ G A     REA+ LF QMQ+    PD TTF+ +LSA          
Sbjct: 585 LSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWV 644

Query: 174 --CHAGFIDKGL-------------------QYFYLMRNDASLEPPRAEHYTAIVGLLGR 212
              H+   D GL                   +Y   + +D  +       +T ++G L +
Sbjct: 645 KEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDD--MVERNVTTWTMMIGGLAQ 702

Query: 213 AGFLNEAESFINSMSRN---PGPSVYKALLSACQVHGNRE 249
            G  ++A S    M R    P  + Y ++LSAC   G  E
Sbjct: 703 HGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALE 742



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 2/168 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  S  D + V+  +  R+  SW  +I G    G G++A   F +M++ G   +  T 
Sbjct: 365 YAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTY 424

Query: 66  TSIV--GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            SI+   AI   S  +  K +H    + G+ S++ + N L+ MYA CG+I+DA  VF  M
Sbjct: 425 LSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGM 484

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            +RD++SWN+++ G A +G   EA  +F QMQ+  + PD TT+L +L+
Sbjct: 485 CDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN 532



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 7/226 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC S  D + ++  +  R+  +WNA+I G      G +AL  F +M++ G   D 
Sbjct: 566 IHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDA 625

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  +I+ A       +  K++H+     G   ++ V N LV  Y+ CG +  A +VF  
Sbjct: 626 TTFINILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDD 684

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER++ +W  ++ G A HG   +A   F QM +  I PD TT++ +LSAC   G     
Sbjct: 685 MVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTG----A 740

Query: 183 LQYFYLMRNDASLEPPRAEHYT--AIVGLLGRAGFLNEAESFINSM 226
           L++   + N A      ++     A+V +  + G +++A S  + M
Sbjct: 741 LEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDM 786



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 100/199 (50%), Gaps = 24/199 (12%)

Query: 39  NLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVF 98
           N+ + + A+       Q GI ID F+  +I+            KQ+H  I K G + N++
Sbjct: 95  NVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLY 154

Query: 99  VQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
           V N+L+ +Y  CG +  A +VF  + ++++  W +++ G A +G++ +A++++++M++  
Sbjct: 155 VANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQEC 214

Query: 159 IKPDGTTFLVVLSACC-----------HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
            +P+  T+L +L ACC           HA  I  G Q      +D  +E       TA+V
Sbjct: 215 GQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQ------SDVRVE-------TALV 261

Query: 208 GLLGRAGFLNEAESFINSM 226
            +  + G + +A+   + M
Sbjct: 262 NMYVKCGSIEDAQLIFDKM 280


>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05750, chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 116/289 (40%), Positives = 172/289 (59%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  + TR+ ISW A+I G    G  EQAL+CF +M+++G+  DY +I +++ A   +  
Sbjct: 183 LFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGA 242

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G  +H  +    +  N+ + N L+ MY+ CG I  A +VF  M +R LVSWNS+++G
Sbjct: 243 LTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVG 302

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G++ E+++ F  MQK   KPDG ++   L+AC HAG ++KGL+ F  M++   +  
Sbjct: 303 FAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKIT- 361

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           PR EHY  IV L GRAG L +A + I  M   P   V  +LL+AC+ HG+  +A R  K 
Sbjct: 362 PRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKH 421

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +  L P   A YVLLSN+  A   WD A ++R  M  RG++KKPGYS V
Sbjct: 422 LFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSV 470



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 34/190 (17%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI--SGFKEGKQMH 85
           + W + +A +C  G   +A   F+ MR AG++ ++ T  +++ A        F     +H
Sbjct: 58  VLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLH 117

Query: 86  ALIFKIGYDS-NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL--------- 135
               K G D+ +V V   L+ MY+ C  +  A KVF ++  ++ VSWN++L         
Sbjct: 118 GYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEI 177

Query: 136 ----------------------LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
                                  G   HGYS +A++ F QMQ++ +  D  + + VL+AC
Sbjct: 178 ELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAAC 237

Query: 174 CHAGFIDKGL 183
              G +  GL
Sbjct: 238 ADLGALTLGL 247



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 16/177 (9%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC      + V+  +  R  +SWN+II GF   G  +++L+ F  M++ G   D 
Sbjct: 269 IDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDG 328

Query: 63  FTITSIVGA---IGVISG----FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
            + T  + A    G+++     F   K +H +  +I +         +V +Y   G + D
Sbjct: 329 VSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEH------YGCIVDLYGRAGRLED 382

Query: 116 ANKVFSSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           A  +   M  + + V   SLL  C  HG    A +L + + K  + P+G  + V+LS
Sbjct: 383 ALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFK--LDPEGDAYYVLLS 437


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 179/302 (59%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C    D   V+S +   + ISWN +IA   +        +  +EMR  G+  D  T
Sbjct: 466 VYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEAT 525

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +  I+    +++  ++GK++H  IFK G++SNV + N L+ MY+ CG++ +  KVF  M 
Sbjct: 526 VLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMK 585

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E+D+V+W +L+     +G  ++A++ F+ M+ + + PD   F+  + AC H+G + +GL+
Sbjct: 586 EKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLR 645

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +F  M+ D +LE PR EHY  +V LL R+G L +AE FI SM   P  S++ ALLSAC+ 
Sbjct: 646 FFDRMKTDYNLE-PRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRA 704

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
            GN  IA R +K++L+L  +D   YVL+SN+      WD    +R  M  +G++K+PG S
Sbjct: 705 RGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSS 764

Query: 305 WV 306
           W+
Sbjct: 765 WI 766



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 97/177 (54%), Gaps = 1/177 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YSR     + + V+  +  R+ +SWN++I+G+C+ G  E AL  + + R  G+  D FT+
Sbjct: 166 YSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTM 225

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A G +   KEG  +H +I KIG   +V + N L+ MY     + +A +VFS M  
Sbjct: 226 SSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAV 285

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +D V+WN+++ G A  G    +V+LF  M    + PD  +    + AC  +G +  G
Sbjct: 286 KDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFV-PDMLSITSTIRACGQSGDLQVG 341



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 92/167 (55%), Gaps = 2/167 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+S +  ++ ++WN +I G+  LG  E ++K F +M   G   D  +ITS + A G  
Sbjct: 277 RRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQS 335

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + GK +H  +   G++ +    N L+ MYA CG +  A +VF +   +D V+WNSL+
Sbjct: 336 GDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLI 395

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            G    GY +E ++ F +M K E KPD  TF+++LS       I++G
Sbjct: 396 NGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQG 441



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 119/250 (47%), Gaps = 6/250 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C   L  Q V+ + + ++ ++WN++I G+   G  ++ L+ F  M+      D  T 
Sbjct: 367 YAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTF 425

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++     ++   +G+ +H  + K G+++ + + N L+ +YA CG ++D  KVFS M  
Sbjct: 426 VLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSA 485

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            D++SWN+++    H        Q+  +M+   + PD  T L +L  C       +G + 
Sbjct: 486 HDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEI 545

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + Y+ ++      P      A++ +  + G L         M +      + AL+SA  +
Sbjct: 546 HGYIFKSGFESNVPIG---NALIEMYSKCGSLENCIKVFKYM-KEKDVVTWTALISAFGM 601

Query: 245 HGNREIAVRS 254
           +G  + A+++
Sbjct: 602 YGEGKKALKA 611



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 97/182 (53%), Gaps = 1/182 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQIS-WNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I  Y++    +   +V+ S+   N +  WN+II    + G   QAL  ++EMR+  +  D
Sbjct: 61  ISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPD 120

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            FT  S++ +   I   + G  +H    ++G++S++++ N L+ MY+    +++A  VF 
Sbjct: 121 AFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFE 180

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M  RD VSWNSL+ G   +G+  +A+ ++ + + T + PD  T   VL AC     + +
Sbjct: 181 EMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKE 240

Query: 182 GL 183
           G+
Sbjct: 241 GV 242


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 178/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+R     D +  +  +  +N +S+NAI+ G+      E+A   F+E+   GI I  
Sbjct: 66  ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISA 125

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++     I    +G+Q+H  + K GY SN  + N L+ MY+ CG I  A +VF+ 
Sbjct: 126 FTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 185

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M++R+++SW S++ G A HG++  A+++F +M +T  KP+  T++ VLSAC H G I +G
Sbjct: 186 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 245

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            ++F  M  +  +  PR EHY  +V LLGR+G L EA  FINSM       V++ LL AC
Sbjct: 246 QKHFNSMYKEHGI-VPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 304

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN E+   +A+ +L+  P+DPA Y+LLSN+  +   W D   IR  M  R + K+ G
Sbjct: 305 RVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAG 364

Query: 303 YSWV 306
            SW+
Sbjct: 365 CSWI 368



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 42/183 (22%)

Query: 6   YSRC--DSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGS-GEQALKCFSEMRQAGIDID 61
           Y++C  D S+D  + V+  +   N +SW AII  +   G   ++A++ F +M  A ++  
Sbjct: 2   YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNC- 60

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
                                                V N L+ MYA  G + DA K F 
Sbjct: 61  -------------------------------------VGNSLISMYARSGRMEDARKAFD 83

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + E++LVS+N+++ G A +  S EA  LF ++  T I     TF  +LS     G + K
Sbjct: 84  ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 143

Query: 182 GLQ 184
           G Q
Sbjct: 144 GEQ 146


>gi|297833250|ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330347|gb|EFH60766.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 676

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 178/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S  D   ++ S +  +++S   I+ G    GS E+A++ F  M QAG++ID   +
Sbjct: 301 YSKCGSIEDAWKIFESSQEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVV 360

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++I+G   V +    GKQ+H+L+ K  +  N FV N L+ MY+ CG + D+  VF  M +
Sbjct: 361 SAILGVSFVDNSLGLGKQLHSLVIKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMPK 420

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWNS++   A HG+   A++L+E+M   E+KP   TFL +L AC H G IDKG + 
Sbjct: 421 RNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGREL 480

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M+    ++ PR EHYT I+ +LGRAG + EA+SFI+S+   P   +++ALL AC  H
Sbjct: 481 LNEMKEVHGIK-PRTEHYTCIIDMLGRAGLMKEAKSFIDSLPLKPDCKIWQALLGACSFH 539

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E+   +A+++ +  P+  A ++L++N+  +   W +       M   G+ K+ G SW
Sbjct: 540 GDTEVGEYAAEQLFETAPDSSAAHILMANIYSSRGKWKERAKTIKRMKEMGVTKETGISW 599

Query: 306 V 306
           +
Sbjct: 600 I 600



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 138/281 (49%), Gaps = 15/281 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y +C  S+  + V+S +  RN I+W A+I+G       E  L+ F  MR+  +  + 
Sbjct: 197 ITSYFKCGCSVSGRWVFSEMAHRNVITWTAVISGLIENELHEDGLRLFCLMRRGLVHPNS 256

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S + A        EG+Q+HAL++K G +S + +++ L+ MY+ CG+I DA K+F S
Sbjct: 257 VTYLSALAACSGSQMIVEGQQIHALLWKFGIESELCIESALMDMYSKCGSIEDAWKIFES 316

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             E D VS   +L+G A +G   EA+Q F +M +  ++ D      V+SA     F+D  
Sbjct: 317 SQEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDAN----VVSAILGVSFVDNS 372

Query: 183 LQYFYLMRNDASLEPPR-----AEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
           L    L +   SL   R           ++ +  + G L ++++    M +    S + +
Sbjct: 373 LG---LGKQLHSLVIKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVS-WNS 428

Query: 238 LLSACQVHGNREIAVRSAKRV--LDLWPNDPAIYVLLSNVS 276
           +++A   HG+   A++  + +  L++ P D     LL   S
Sbjct: 429 MIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACS 469



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 1/184 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D   ++  +  R+ IS N +  GF      E        M  +G   D  T+
Sbjct: 100 YVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLLKRMLGSG-GFDQATL 158

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T ++            K +HAL    GYD  + V N+L+  Y  CG       VFS M  
Sbjct: 159 TIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRWVFSEMAH 218

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++++W +++ G   +    + ++LF  M++  + P+  T+L  L+AC  +  I +G Q 
Sbjct: 219 RNVITWTAVISGLIENELHEDGLRLFCLMRRGLVHPNSVTYLSALAACSGSQMIVEGQQI 278

Query: 186 FYLM 189
             L+
Sbjct: 279 HALL 282



 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 97  VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
           + V N L+ +Y  CG + DA K+F  M  RD++S N +  G   +  +     L ++M  
Sbjct: 90  LVVWNSLLSLYVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLLKRMLG 149

Query: 157 TEIKPDGTTFLVVLSAC 173
           +    D  T  +VLS C
Sbjct: 150 SG-GFDQATLTIVLSVC 165


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 121/300 (40%), Positives = 174/300 (58%), Gaps = 2/300 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFT 64
           Y+R     +   ++     RN  SW A+I+G    G        F EMR+ G+DI D   
Sbjct: 180 YARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLV 239

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++S+VGA   ++    GKQ+H L+   GY+S +F+ N LV MYA C  I  A  VF+ M 
Sbjct: 240 LSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRML 299

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD+VSW S+++G A HG ++EA+ L++QM   EIKP+  TF+ ++ AC HAG + KG +
Sbjct: 300 HRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRK 359

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M  D  +  P  + +T  + LL R+G LNEAE  I +M   P    + ALLSAC+ 
Sbjct: 360 LFKAMIEDYRIS-PSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKH 418

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN E+ VR A R+L L  ++P+ YVLLSNV      W+    +R LM +  +++KPGYS
Sbjct: 419 HGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYS 478



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 5/188 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFT 64
           Y +C+   D   ++  +  R+ +SW +I+  +       + L  F  M     +  D+F 
Sbjct: 47  YGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFV 106

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             +++ A   +   + GKQ+HA      +  +  V++ LV MYA CG  + A  VF S+ 
Sbjct: 107 YATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSIL 166

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +  VSW ++L G A  G   EA++LF    +T ++ +  ++  ++S    +G+   G  
Sbjct: 167 VKTSVSWTAMLSGYARSGLKDEAMELF---LRTPVR-NLYSWTALISGLVQSGYCIDGCY 222

Query: 185 YFYLMRND 192
            F  MR +
Sbjct: 223 MFIEMRRE 230



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
            K++HA I K G +    + N L+  Y  C  + DA+ +F  M +RD VSW S+L     
Sbjct: 21  AKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQ 80

Query: 141 HGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSAC 173
                + + +F  M  T+ ++PD   +  +L AC
Sbjct: 81  AKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKAC 114


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 178/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS CDS     +V+S + TR+ + WN+II+     G    AL    EM  + ++++ 
Sbjct: 541 ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNT 600

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S + A   ++  ++GK++H  I + G D+  F+ N L+ MY  CG+I  + ++F  
Sbjct: 601 VTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDL 660

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M +RDLVSWN ++     HG+  +AV LF+Q +   +KP+  TF  +LSAC H+G I++G
Sbjct: 661 MPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEG 720

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF +M+ + +++P   E Y  +V LL RAG  NE   FI  M   P  +V+ +LL AC
Sbjct: 721 WKYFKMMKTEYAMDPA-VEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGAC 779

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N ++A  +A+ + +L P     YVL++N+  A   W+DA  IR LM  RG+ K PG
Sbjct: 780 RIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPG 839

Query: 303 YSWV 306
            SW+
Sbjct: 840 CSWI 843



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 130/271 (47%), Gaps = 12/271 (4%)

Query: 11  SSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVG 70
           S + FQ +   +     I+WN ++ GF   G G+ AL+ F  M   G+D +  TI+  + 
Sbjct: 453 SEMKFQGIEPDI-----ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALA 507

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
           A G +   K GK++H  + +   + +  V + L+ MY+ C ++  A  VFS +  RD+V 
Sbjct: 508 ACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVV 567

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLM 189
           WNS++  CA  G S  A+ L  +M  + ++ +  T +  L AC     + +G + + +++
Sbjct: 568 WNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFII 627

Query: 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNRE 249
           R    L+        +++ + GR G + ++    + M +    S +  ++S   +HG   
Sbjct: 628 R--CGLDTCNF-ILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVS-WNVMISVYGMHGFGM 683

Query: 250 IAVRSAK--RVLDLWPNDPAIYVLLSNVSKA 278
            AV   +  R + L PN      LLS  S +
Sbjct: 684 DAVNLFQQFRTMGLKPNHITFTNLLSACSHS 714



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 111/232 (47%), Gaps = 4/232 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +  RN  SW AI+  +C LG  E+ +K F  M   G+  D+F    +  A  
Sbjct: 142 DARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACS 201

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +  ++ GK ++  +  IG++ N  V+  ++ M+  CG ++ A + F  ++ +D+  WN 
Sbjct: 202 ELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNI 261

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G    G  ++A++    M+ + +KPD  T+  ++S    +G  ++  +YF  M    
Sbjct: 262 MVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLK 321

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM---SRNPGPSVYKALLSAC 242
             + P    +TA++    + G+  EA S    M      P      + +SAC
Sbjct: 322 DFK-PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 97/190 (51%), Gaps = 6/190 (3%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N +SW A+IAG    G   +AL  F +M   G+  +  TI S V A   +S  + G+++H
Sbjct: 326 NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIH 385

Query: 86  ALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
               K+   DS++ V N LV  YA C ++  A + F  + + DLVSWN++L G A  G  
Sbjct: 386 GYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSH 445

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
            EA++L  +M+   I+PD  T+  +++     G     L++F  M +   ++P    + T
Sbjct: 446 EEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM-HSMGMDP----NTT 500

Query: 205 AIVGLLGRAG 214
            I G L   G
Sbjct: 501 TISGALAACG 510



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G Q+HA +   G D   F+ +RL+ +Y   G + DA ++F  M ER++ SW +++     
Sbjct: 108 GFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCG 167

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            G   E ++LF  M    ++PD   F  V  AC
Sbjct: 168 LGDYEETIKLFYLMVNEGVRPDHFVFPKVFKAC 200


>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 116/289 (40%), Positives = 172/289 (59%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  + TR+ ISW A+I G    G  EQAL+CF +M+++G+  DY +I +++ A   +  
Sbjct: 183 LFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGA 242

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G  +H  +    +  N+ + N L+ MY+ CG I  A +VF  M +R LVSWNS+++G
Sbjct: 243 LTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVG 302

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G++ E+++ F  MQK   KPDG ++   L+AC HAG ++KGL+ F  M++   +  
Sbjct: 303 FAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKIT- 361

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           PR EHY  IV L GRAG L +A + I  M   P   V  +LL+AC+ HG+  +A R  K 
Sbjct: 362 PRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKH 421

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +  L P   A YVLLSN+  A   WD A ++R  M  RG++KKPGYS V
Sbjct: 422 LFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSV 470



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 34/190 (17%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI--SGFKEGKQMH 85
           + W + +A +C  G   +A   F+ MR AG++ ++ T  +++ A        F     +H
Sbjct: 58  VLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLH 117

Query: 86  ALIFKIGYDS-NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL--------- 135
               K G D+ +V V   L+ MY+ C  +  A KVF ++  ++ VSWN++L         
Sbjct: 118 GYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEI 177

Query: 136 ----------------------LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
                                  G   HGYS +A++ F QMQ++ +  D  + + VL+AC
Sbjct: 178 ELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAAC 237

Query: 174 CHAGFIDKGL 183
              G +  GL
Sbjct: 238 ADLGALTLGL 247



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 16/177 (9%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC      + V+  +  R  +SWN+II GF   G  +++L+ F  M++ G   D 
Sbjct: 269 IDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDG 328

Query: 63  FTITSIVGA---IGVISG----FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
            + T  + A    G+++     F   K +H +  +I +         +V +Y   G + D
Sbjct: 329 VSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEH------YGCIVDLYGRAGRLED 382

Query: 116 ANKVFSSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           A  +   M  + + V   SLL  C  HG    A +L + + K  + P+G  + V+LS
Sbjct: 383 ALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFK--LDPEGDAYYVLLS 437


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 178/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+R     D +  +  +  +N +S+NAI+ G+      E+A   F+E+   GI I  
Sbjct: 198 ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISA 257

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++     I    +G+Q+H  + K GY SN  + N L+ MY+ CG I  A +VF+ 
Sbjct: 258 FTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 317

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M++R+++SW S++ G A HG++  A+++F +M +T  KP+  T++ VLSAC H G I +G
Sbjct: 318 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 377

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            ++F  M  +  +  PR EHY  +V LLGR+G L EA  FINSM       V++ LL AC
Sbjct: 378 QKHFNSMYKEHGI-VPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 436

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN E+   +A+ +L+  P+DPA Y+LLSN+  +   W D   IR  M  R + K+ G
Sbjct: 437 RVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAG 496

Query: 303 YSWV 306
            SW+
Sbjct: 497 CSWI 500



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 4/161 (2%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +  RN ++W  +I  F  LG    A+  F +M  +G   D FT +S++ A   + 
Sbjct: 6   KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 65

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC---GAINDANKVFSSMDERDLVSWNS 133
               GKQ+H+ + ++G   +V V   LV MYA C   G+++D+ KVF  M E +++SW +
Sbjct: 66  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 125

Query: 134 LLLGCAHHGY-SREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           ++   A  G   +EA++LF +M    I+P+  +F  VL AC
Sbjct: 126 IITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC 166



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 99/183 (54%), Gaps = 4/183 (2%)

Query: 6   YSRC--DSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGS-GEQALKCFSEMRQAGIDID 61
           Y++C  D S+D  + V+  +   N +SW AII  +   G   ++A++ F +M    I  +
Sbjct: 96  YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPN 155

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           +F+ +S++ A G +S    G+Q+++   K+G  S   V N L+ MYA  G + DA K F 
Sbjct: 156 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 215

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + E++LVS+N+++ G A +  S EA  LF ++  T I     TF  +LS     G + K
Sbjct: 216 ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 275

Query: 182 GLQ 184
           G Q
Sbjct: 276 GEQ 278



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%)

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
           A KVF  M ER+LV+W  ++   A  G +R+A+ LF  M+ +   PD  T+  VLSAC  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 176 AGFIDKGLQ 184
            G +  G Q
Sbjct: 64  LGLLALGKQ 72


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 179/302 (59%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C    D   V+S +   + ISWN +IA   +        +  +EMR  G+  D  T
Sbjct: 466 VYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEAT 525

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +  I+    +++  ++GK++H  IFK G++SNV + N L+ MY+ CG++ +  KVF  M 
Sbjct: 526 VLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMK 585

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E+D+V+W +L+     +G  ++A++ F+ M+ + + PD   F+  + AC H+G + +GL+
Sbjct: 586 EKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLR 645

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +F  M+ D +LE PR EHY  +V LL R+G L +AE FI SM   P  S++ ALLSAC+ 
Sbjct: 646 FFDRMKTDYNLE-PRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRA 704

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
            GN  IA R +K++L+L  +D   YVL+SN+      WD    +R  M  +G++K+PG S
Sbjct: 705 RGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSS 764

Query: 305 WV 306
           W+
Sbjct: 765 WI 766



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 97/177 (54%), Gaps = 1/177 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YSR     + + V+  +  R+ +SWN++I+G+C+ G  E AL  + + R  G+  D FT+
Sbjct: 166 YSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTM 225

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A G +   KEG  +H +I KIG   +V + N L+ MY     + +A +VFS M  
Sbjct: 226 SSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAV 285

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +D V+WN+++ G A  G    +V+LF  M    + PD  +    + AC  +G +  G
Sbjct: 286 KDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFV-PDMLSITSTIRACGQSGDLQVG 341



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 92/167 (55%), Gaps = 2/167 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+S +  ++ ++WN +I G+  LG  E ++K F +M   G   D  +ITS + A G  
Sbjct: 277 RRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQS 335

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + GK +H  +   G++ +    N L+ MYA CG +  A +VF +   +D V+WNSL+
Sbjct: 336 GDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLI 395

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            G    GY +E ++ F +M K E KPD  TF+++LS       I++G
Sbjct: 396 NGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQG 441



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 119/250 (47%), Gaps = 6/250 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C   L  Q V+ + + ++ ++WN++I G+   G  ++ L+ F  M+      D  T 
Sbjct: 367 YAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTF 425

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++     ++   +G+ +H  + K G+++ + + N L+ +YA CG ++D  KVFS M  
Sbjct: 426 VLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSA 485

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            D++SWN+++    H        Q+  +M+   + PD  T L +L  C       +G + 
Sbjct: 486 HDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEI 545

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + Y+ ++      P      A++ +  + G L         M +      + AL+SA  +
Sbjct: 546 HGYIFKSGFESNVPIG---NALIEMYSKCGSLENCIKVFKYM-KEKDVVTWTALISAFGM 601

Query: 245 HGNREIAVRS 254
           +G  + A+++
Sbjct: 602 YGEGKKALKA 611



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 93/172 (54%), Gaps = 1/172 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQIS-WNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I  Y++    +   +V+ S+   N +  WN+II    + G   QAL  ++EMR+  +  D
Sbjct: 61  ISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPD 120

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            FT  S++ +   I   + G  +H    ++G++S++++ N L+ MY+    +++A  VF 
Sbjct: 121 AFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFE 180

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            M  RD VSWNSL+ G   +G+  +A+ ++ + + T + PD  T   VL AC
Sbjct: 181 EMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLAC 232


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 180/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C    D   V+  +   + ISWN+IIAG    G  ++ LK F +M  A I  ++
Sbjct: 238 IDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNH 297

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            + +SI+ A   ++    GKQ+H  I +  +D NVF+ + LV MYA CG I  A  +F  
Sbjct: 298 VSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDK 357

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+  D+VSW ++++G A HG++ +A+ LF++M+   +KP+   F+ VL+AC HAG +D+ 
Sbjct: 358 MELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEA 417

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M  D  +  P  EHY A+  LLGR G L EA  FI+ M   P  SV+  LL+AC
Sbjct: 418 WKYFNSMTQDYRI-IPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAAC 476

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH N E+A + +K++  + P +   YVLLSN+  A   W DA  +R  M ++G++KKP 
Sbjct: 477 RVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPA 536

Query: 303 YSWV 306
            SW+
Sbjct: 537 CSWI 540



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 136/267 (50%), Gaps = 7/267 (2%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
            + V+  +  R+ +SWN +I+G    G  E AL    EM  A +  D FT++S++     
Sbjct: 149 LRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAE 208

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
                +GK++H    + GYD++VF+ + L+ MYA C  ++D+ +VF  + + D +SWNS+
Sbjct: 209 YVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSI 268

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDA 193
           + GC  +G   E ++ F+QM   +IKP+  +F  ++ AC H   +  G Q + Y++R+  
Sbjct: 269 IAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRF 328

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
                 A   +A+V +  + G +  A    + M      S + A++    +HG+   A+ 
Sbjct: 329 DGNVFIA---SALVDMYAKCGNIRTARWIFDKMELYDMVS-WTAMIMGYALHGHAYDAIS 384

Query: 254 SAKR--VLDLWPNDPAIYVLLSNVSKA 278
             KR  V  + PN  A   +L+  S A
Sbjct: 385 LFKRMEVEGVKPNYVAFMAVLTACSHA 411



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 14/151 (9%)

Query: 42  SGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQN 101
           S    L C  + R AGID +        G +  +S        +  +F  G  S+V+ + 
Sbjct: 88  SNSHDLPCELDERVAGIDQN--------GDLNQMSNILYQVNTYKKVFDEGKTSDVYSKK 139

Query: 102 RLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
                Y     +    KVF  M +RD+VSWN+++ G A +G   +A+ +  +M   +++P
Sbjct: 140 EKESYY-----LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRP 194

Query: 162 DGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN 191
           D  T   VL        + KG + + Y +RN
Sbjct: 195 DSFTLSSVLPIFAEYVNLLKGKEIHGYAIRN 225


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 178/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+R     D +  +  +  +N +S+NAI+ G+      E+A   F+E+   GI I  
Sbjct: 203 ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISA 262

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++     I    +G+Q+H  + K GY SN  + N L+ MY+ CG I  A +VF+ 
Sbjct: 263 FTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 322

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M++R+++SW S++ G A HG++  A+++F +M +T  KP+  T++ VLSAC H G I +G
Sbjct: 323 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 382

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            ++F  M  +  +  PR EHY  +V LLGR+G L EA  FINSM       V++ LL AC
Sbjct: 383 QKHFNSMYKEHGI-VPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 441

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN E+   +A+ +L+  P+DPA Y+LLSN+  +   W D   IR  M  R + K+ G
Sbjct: 442 RVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAG 501

Query: 303 YSWV 306
            SW+
Sbjct: 502 CSWI 505



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 4/161 (2%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +  RN ++W  +I  F  LG    A+  F +M  +G   D FT +S++ A   + 
Sbjct: 11  KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 70

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC---GAINDANKVFSSMDERDLVSWNS 133
               GKQ+H+ + ++G   +V V   LV MYA C   G+++D+ KVF  M E +++SW +
Sbjct: 71  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 130

Query: 134 LLLGCAHHGY-SREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           ++   A  G   +EA++LF +M    I+P+  +F  VL AC
Sbjct: 131 IITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC 171



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 99/183 (54%), Gaps = 4/183 (2%)

Query: 6   YSRC--DSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGS-GEQALKCFSEMRQAGIDID 61
           Y++C  D S+D  + V+  +   N +SW AII  +   G   ++A++ F +M    I  +
Sbjct: 101 YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPN 160

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           +F+ +S++ A G +S    G+Q+++   K+G  S   V N L+ MYA  G + DA K F 
Sbjct: 161 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 220

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + E++LVS+N+++ G A +  S EA  LF ++  T I     TF  +LS     G + K
Sbjct: 221 ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 280

Query: 182 GLQ 184
           G Q
Sbjct: 281 GEQ 283



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%)

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
           A KVF  M ER+LV+W  ++   A  G +R+A+ LF  M+ +   PD  T+  VLSAC  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 176 AGFIDKGLQ 184
            G +  G Q
Sbjct: 69  LGLLALGKQ 77


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 178/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+R     D +  +  +  +N +S+NAI+ G+      E+A   F+E+   GI I  
Sbjct: 378 ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISA 437

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++     I    +G+Q+H  + K GY SN  + N L+ MY+ CG I  A +VF+ 
Sbjct: 438 FTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 497

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M++R+++SW S++ G A HG++  A+++F +M +T  KP+  T++ VLSAC H G I +G
Sbjct: 498 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 557

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            ++F  M  +  +  PR EHY  +V LLGR+G L EA  FINSM       V++ LL AC
Sbjct: 558 QKHFNSMYKEHGI-VPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 616

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN E+   +A+ +L+  P+DPA Y+LLSN+  +   W D   IR  M  R + K+ G
Sbjct: 617 RVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAG 676

Query: 303 YSWV 306
            SW+
Sbjct: 677 CSWI 680



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 4/161 (2%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +  RN ++W  +I  F  LG    A+  F +M  +G   D FT +S++ A   + 
Sbjct: 186 KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 245

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC---GAINDANKVFSSMDERDLVSWNS 133
               GKQ+H+ + ++G   +V V   LV MYA C   G+++D+ KVF  M E +++SW +
Sbjct: 246 LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 305

Query: 134 LLLGCAHHGY-SREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           ++      G   +EA++LF +M    I+P+  +F  VL AC
Sbjct: 306 IITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC 346



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 99/183 (54%), Gaps = 4/183 (2%)

Query: 6   YSRC--DSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGS-GEQALKCFSEMRQAGIDID 61
           Y++C  D S+D  + V+  +   N +SW AII  +   G   ++A++ F +M    I  +
Sbjct: 276 YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPN 335

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           +F+ +S++ A G +S    G+Q+++   K+G  S   V N L+ MYA  G + DA K F 
Sbjct: 336 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 395

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + E++LVS+N+++ G A +  S EA  LF ++  T I     TF  +LS     G + K
Sbjct: 396 ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 455

Query: 182 GLQ 184
           G Q
Sbjct: 456 GEQ 458



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 95/185 (51%), Gaps = 3/185 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSV-RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I  YS+C  +   + ++  +   R+ +SW+A+++ F N     QA+  F +M + G   +
Sbjct: 68  ISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPN 127

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGY-DSNVFVQNRLVFMYAI-CGAINDANKV 119
            +   +++ A    +    G+ ++  + K GY +++V V   L+ M+    G +  A KV
Sbjct: 128 EYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKV 187

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M ER+LV+W  ++   A  G +R+A+ LF  M+ +   PD  T+  VLSAC   G +
Sbjct: 188 FDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLL 247

Query: 180 DKGLQ 184
             G Q
Sbjct: 248 ALGKQ 252


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 179/302 (59%), Gaps = 1/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     + + V+  +  R+ +S  AII+G+  LG  E+AL  F  +++ G+  +Y T 
Sbjct: 156 YAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTY 215

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A+  ++    G+Q+H+ + +      V +QN L+ MY+ CG++  + ++F SM E
Sbjct: 216 ASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPE 275

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           R ++SWN++L+G + HG  REAV+LF+ M ++ ++KPD  TFL VLS C H G  D+GL+
Sbjct: 276 RTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLE 335

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            FY M N      P  EHY  +V L GRAG + EA  FI  M   P  +++ +LL AC+V
Sbjct: 336 IFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRV 395

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N  I    A+R+L++   +   YV+LSN+  +   WDD   +R LM  + + K+PG S
Sbjct: 396 HQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRS 455

Query: 305 WV 306
           W+
Sbjct: 456 WI 457



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 131/245 (53%), Gaps = 5/245 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y++C    D + V   +  RN +SW A+I+G+   G   +AL  F EM  +G   + 
Sbjct: 52  IVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNE 111

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  +++ +    SGF+ G+Q+H+L+ K  ++S++FV + L+ MYA  G I +A +VF  
Sbjct: 112 FTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDG 171

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ERD+VS  +++ G A  G   EA+ LF ++Q+  ++ +  T+  VL+A      +D G
Sbjct: 172 LPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHG 231

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            Q + +++R  A L P       +++ +  + G L  +    +SM      S + A+L  
Sbjct: 232 RQVHSHVLR--AKL-PFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVIS-WNAMLVG 287

Query: 242 CQVHG 246
              HG
Sbjct: 288 YSKHG 292



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 75/133 (56%)

Query: 57  GIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
           G+++++    S++      +  +EG+++HA + K  Y+  V+++ RL+ +Y  C  + DA
Sbjct: 5   GLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDA 64

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
            +V   M ER++VSW +++ G +  GY+ EA+ LF +M  +   P+  TF  VL++C  +
Sbjct: 65  RRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSS 124

Query: 177 GFIDKGLQYFYLM 189
                G Q   L+
Sbjct: 125 SGFQLGRQIHSLV 137


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  231 bits (588), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 178/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+R     D +  +  +  +N +S+NAI+ G+      E+A   F+E+   GI I  
Sbjct: 396 ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISA 455

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++     I    +G+Q+H  + K GY SN  + N L+ MY+ CG I  A +VF+ 
Sbjct: 456 FTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 515

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M++R+++SW S++ G A HG++  A+++F +M +T  KP+  T++ VLSAC H G I +G
Sbjct: 516 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 575

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            ++F  M  +  +  PR EHY  +V LLGR+G L EA  FINSM       V++ LL AC
Sbjct: 576 QKHFNSMYKEHGI-VPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 634

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN E+   +A+ +L+  P+DPA Y+LLSN+  +   W D   IR  M  R + K+ G
Sbjct: 635 RVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAG 694

Query: 303 YSWV 306
            SW+
Sbjct: 695 CSWI 698



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 4/161 (2%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +  RN ++W  +I  F  LG    A+  F +M  +G   D FT +S++ A   + 
Sbjct: 204 KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 263

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC---GAINDANKVFSSMDERDLVSWNS 133
               GKQ+H+ + ++G   +V V   LV MYA C   G+++D+ KVF  M E +++SW +
Sbjct: 264 LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 323

Query: 134 LLLGCAHHGY-SREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           ++      G   +EA++LF +M    I+P+  +F  VL AC
Sbjct: 324 IITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC 364



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 99/183 (54%), Gaps = 4/183 (2%)

Query: 6   YSRC--DSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGS-GEQALKCFSEMRQAGIDID 61
           Y++C  D S+D  + V+  +   N +SW AII  +   G   ++A++ F +M    I  +
Sbjct: 294 YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPN 353

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           +F+ +S++ A G +S    G+Q+++   K+G  S   V N L+ MYA  G + DA K F 
Sbjct: 354 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 413

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + E++LVS+N+++ G A +  S EA  LF ++  T I     TF  +LS     G + K
Sbjct: 414 ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 473

Query: 182 GLQ 184
           G Q
Sbjct: 474 GEQ 476



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 95/185 (51%), Gaps = 3/185 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSV-RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I  YS+C  +   + ++  +   R+ +SW+A+++ F N     QA+  F +M + G   +
Sbjct: 86  ISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPN 145

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGY-DSNVFVQNRLVFMYAI-CGAINDANKV 119
            +   +++ A    +    G+ ++  + K GY +++V V   L+ M+    G +  A KV
Sbjct: 146 EYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKV 205

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M ER+LV+W  ++   A  G +R+A+ LF  M+ +   PD  T+  VLSAC   G +
Sbjct: 206 FDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLL 265

Query: 180 DKGLQ 184
             G Q
Sbjct: 266 ALGKQ 270


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 179/302 (59%), Gaps = 1/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     + + V+  +  R+ +S  AII+G+  LG  E+AL  F  +++ G+  +Y T 
Sbjct: 623 YAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTY 682

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A+  ++    G+Q+H+ + +      V +QN L+ MY+ CG++  + ++F SM E
Sbjct: 683 ASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPE 742

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           R ++SWN++L+G + HG  REAV+LF+ M ++ ++KPD  TFL VLS C H G  D+GL+
Sbjct: 743 RTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLE 802

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            FY M N      P  EHY  +V L GRAG + EA  FI  M   P  +++ +LL AC+V
Sbjct: 803 IFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRV 862

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N  I    A+R+L++   +   YV+LSN+  +   WDD   +R LM  + + K+PG S
Sbjct: 863 HQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRS 922

Query: 305 WV 306
           W+
Sbjct: 923 WI 924



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 131/245 (53%), Gaps = 5/245 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y++C    D + V   +  RN +SW A+I+G+   G   +AL  F EM  +G   + 
Sbjct: 519 IVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNE 578

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  +++ +    SGF+ G+Q+H+L+ K  ++S++FV + L+ MYA  G I +A +VF  
Sbjct: 579 FTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDG 638

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ERD+VS  +++ G A  G   EA+ LF ++Q+  ++ +  T+  VL+A      +D G
Sbjct: 639 LPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHG 698

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            Q + +++R  A L P       +++ +  + G L  +    +SM      S + A+L  
Sbjct: 699 RQVHSHVLR--AKL-PFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVIS-WNAMLVG 754

Query: 242 CQVHG 246
              HG
Sbjct: 755 YSKHG 759



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 81/151 (53%)

Query: 39  NLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVF 98
            L S  Q  +   EM   G+++++    S++      +  +EG+++HA + K  Y+  V+
Sbjct: 454 TLCSNRQLKEALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVY 513

Query: 99  VQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
           ++ RL+ +Y  C  + DA +V   M ER++VSW +++ G +  GY+ EA+ LF +M  + 
Sbjct: 514 LRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSG 573

Query: 159 IKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
             P+  TF  VL++C  +     G Q   L+
Sbjct: 574 TAPNEFTFATVLTSCTSSSGFQLGRQIHSLV 604


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 109/289 (37%), Positives = 183/289 (63%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  ++ +   SW AI++G+  +G    AL+ F  M+  GI+ D  ++ S++ A   +  
Sbjct: 205 IFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGA 264

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + GK +H    K G+  N+ V N L+ MYA CG+I++  ++F  M+ERD++SW+++++G
Sbjct: 265 LELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVG 324

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A+HG + EA++LF++MQK +I+P+  TF+ +LSAC HAG +++GL+YF  M+ D ++EP
Sbjct: 325 LANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEP 384

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
              EHY  +V LLG +G L++A   I  M   P  +++ +LLS+C+ H N EIAV + + 
Sbjct: 385 G-VEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEH 443

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +L+L P D   YVLLSN+      WD    +R LM ++ ++K PG S +
Sbjct: 444 LLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSI 492



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 10/185 (5%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-----QAGIDIDYFTITSIVGAI 72
           ++  V   N   +NA+I  + +      A+  + +M      +  I  D FT   +V + 
Sbjct: 68  LFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSC 127

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
             +  +  GKQ+H  +FK G  SN  V+N LV MY  C +++DA+KVF  M ERD VSWN
Sbjct: 128 AGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWN 187

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           +L+ G    G  R A  +FE+MQ   I     ++  ++S     G     L++F  M+  
Sbjct: 188 TLISGHVRLGQMRRARAIFEEMQDKTI----FSWTAIVSGYARIGCYADALEFFRRMQM- 242

Query: 193 ASLEP 197
             +EP
Sbjct: 243 VGIEP 247



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 6/172 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S  + + ++  +  R+ ISW+ +I G  N G   +A++ F EM++A I+ + 
Sbjct: 291 IEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNI 350

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVF 120
            T   ++ A        EG +    + K  Y+    V++   LV +  + G ++ A ++ 
Sbjct: 351 ITFVGLLSACAHAGLLNEGLRYFESM-KRDYNIEPGVEHYGCLVNLLGLSGRLDQALELI 409

Query: 121 SSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             M  + D   W SLL  C  H     AV   E +   E++P  T   V+LS
Sbjct: 410 KKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHL--LELEPADTGNYVLLS 459


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 176/302 (58%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C   LD    ++  +  ++ + WNAII      G  ++A+  F +M + G+  D  +
Sbjct: 320 YAKC-GRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVS 378

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I++ + A   +     GK +H+ + K  +DS VF ++ L+ MY  CG ++ A  VF  M 
Sbjct: 379 ISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMR 438

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E++ VSWNS++     HG+   ++ LF +M +  I+PD  TFL +LSAC HAG +DKG+Q
Sbjct: 439 EKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQ 498

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF  M  +  + P R EHY  IV L GRAG LNEA   I +M  +P   V+  LL AC+V
Sbjct: 499 YFRCMTEEYGI-PARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRV 557

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN E+A  +++ +LDL P +   YVLLSNV      W     IR+LM  RG++K PGYS
Sbjct: 558 HGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQKVPGYS 617

Query: 305 WV 306
           W+
Sbjct: 618 WI 619



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 123/250 (49%), Gaps = 5/250 (2%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
            AII+G+   G    AL+ F  + +  +  +  T+ S++ A   ++    GK++HA I K
Sbjct: 244 TAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILK 303

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
            G D    V + ++ MYA CG ++ A ++F  M E+D V WN+++  C+ +G  +EA+ L
Sbjct: 304 HGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDL 363

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLL 210
           F QM +  +  D  +    LSAC +   +  G      M   A      AE  +A++ + 
Sbjct: 364 FRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAE--SALIDMY 421

Query: 211 GRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAI 268
           G+ G L+ A    + M R      + ++++A   HG+ E+++    ++L+  + P+    
Sbjct: 422 GKCGNLSVARCVFD-MMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTF 480

Query: 269 YVLLSNVSKA 278
             +LS    A
Sbjct: 481 LTILSACGHA 490



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 96/184 (52%), Gaps = 1/184 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +  ++ + WN ++ GF   G    A+K F +MR      +  T  S++    
Sbjct: 25  DARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTKPNSITFASVLSICA 84

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
             +  + G Q+H L+   G+  +  V N LV MY+  G ++DA K+F++M + ++V+WN 
Sbjct: 85  SEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNG 144

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
           ++ G   +G+  EA  LF +M    + PD  TF   L +   +  + +G + + Y++R+ 
Sbjct: 145 MIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHG 204

Query: 193 ASLE 196
            +L+
Sbjct: 205 IALD 208



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 120/250 (48%), Gaps = 3/250 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+     D   +++++   N ++WN +IAGF   G  ++A   FSEM  AG+  D 
Sbjct: 115 VAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDS 174

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S + ++   +  K+GK++H  I + G   +VF+++ L+ +Y  C  +  A K+F  
Sbjct: 175 ITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQ 234

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
               D+V   +++ G   +G + +A+++F  + + ++ P+  T   VL AC     ++ G
Sbjct: 235 STNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLG 294

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +    +      E  R    +AI+ +  + G L+ A      M        + A+++ C
Sbjct: 295 KELHANILKHGLDE--RRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDA-VCWNAIITNC 351

Query: 243 QVHGNREIAV 252
             +G  + A+
Sbjct: 352 SQNGKPQEAI 361



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
           +G++ + FV + L+ +YA  G I DA ++F  M  +D V WN +L G    G    AV++
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA-SLEPPRAEHYTAIVGL 209
           FE M+  + KP+  TF  VLS C      + G Q   L+ +     +P  A    A+V +
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVA---NALVAM 117

Query: 210 LGRAGFLNEAESFINSM 226
             + G L++A    N+M
Sbjct: 118 YSKFGQLSDALKLFNTM 134


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  230 bits (586), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 187/307 (60%), Gaps = 7/307 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+R  S    + ++S++  +N +SWNA+IAG+   G  E+A++ F  +++  I   ++T 
Sbjct: 329 YARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTF 388

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGY------DSNVFVQNRLVFMYAICGAINDANKV 119
            +++ A   ++  K G+Q H  I K G+      +S++FV N L+ MY  CG + D   V
Sbjct: 389 GNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLV 448

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M ERD+VSWN++++G A +GY   A+++F +M  +  KPD  T + VLSAC HAG +
Sbjct: 449 FERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLV 508

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           ++G +YF+ MR +  L P + +H+T +V LLGRAG L+EA   I +M   P   V+ +LL
Sbjct: 509 EEGRRYFHSMRTELGLAPMK-DHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLL 567

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           +AC+VHGN E+    A++++++ P +   YVLLSN+      W D   +R  M  RG+ K
Sbjct: 568 AACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIK 627

Query: 300 KPGYSWV 306
           +PG SW+
Sbjct: 628 QPGCSWI 634



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 17/233 (7%)

Query: 1   LQILT-YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID 59
           L +LT + + D +    NV+ S+   +Q SWNA+++GF      E+AL+ F +M      
Sbjct: 92  LSVLTKFGKLDEAF---NVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFV 148

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           ++ ++  S + A   ++    G Q+HALI K  Y  +V++ + LV MY+ CG +  A + 
Sbjct: 149 LNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRA 208

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M  R++VSWNSL+     +G + +A+++F  M    ++PD  T   V+SAC     I
Sbjct: 209 FDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAI 268

Query: 180 DKGLQYFYLM------RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
            +GLQ    +      RND  L         A+V +  +   +NEA    + M
Sbjct: 269 REGLQIHARVVKRDKYRNDLVLG-------NALVDMYAKCRRVNEARLVFDRM 314



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 102/211 (48%), Gaps = 32/211 (15%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      Q  +  +  RN +SWN++I  +   G   +AL+ F  M   G++ D  T+
Sbjct: 196 YSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITL 255

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVF---- 120
            S+V A    S  +EG Q+HA + K   Y +++ + N LV MYA C  +N+A  VF    
Sbjct: 256 ASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMP 315

Query: 121 ---------------------------SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                                      S+M E+++VSWN+L+ G   +G + EAV+LF  
Sbjct: 316 LRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLL 375

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++  I P   TF  +L+AC +   +  G Q
Sbjct: 376 LKRESIWPTHYTFGNLLNACANLADLKLGRQ 406



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 4/113 (3%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           + +++HA I K  + S +F+QNRLV  Y  CG   DA KVF  M +R+  S+N++L    
Sbjct: 37  DARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLT 96

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
             G   EA  +F+ M     +PD  ++  ++S        ++ L++F  M ++
Sbjct: 97  KFGKLDEAFNVFKSMP----EPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSE 145


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  230 bits (586), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 172/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  + + ++  +  R+ +SW  +I  +   G  E+    F  +  + I  + FT 
Sbjct: 296 YGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTF 355

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   ++    GKQ+HA + ++G+DS     + LV MY+ CG I +A  VF  + +
Sbjct: 356 AGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQ 415

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            DL SW SLL+G A HG   +A+  FE + K+  KPDG  F+ VLSAC HAG +DKGL+Y
Sbjct: 416 PDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEY 475

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ ++    L     +HY  I+ LL RAG   EAES IN M   P   ++ ALL  C++H
Sbjct: 476 FHSIKEKHGLTRT-IDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIH 534

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+A R+AK + ++ P +PA YV L+N+  +     +  +IR  M +RGI KKPG SW
Sbjct: 535 GNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSW 594

Query: 306 V 306
           +
Sbjct: 595 I 595



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 119/246 (48%), Gaps = 18/246 (7%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY-----FTITSIVG 70
           +N++  +  R+  SW AII+G       E+AL+ +  M++     DY      TI+S + 
Sbjct: 204 RNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKH----DYSKSNKCTISSALA 259

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
           A   I     GK++H  I ++G DS+  V   L+ MY  CG+I +A  +F  M+ERD+VS
Sbjct: 260 ASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVS 319

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLM 189
           W +++     +G   E   LF  +  + I P+  TF  VL+AC      D G Q + Y++
Sbjct: 320 WTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMV 379

Query: 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYK--ALLSACQVHGN 247
           R         A   +A+V +  + G +  A+S    +   P P ++   +LL     HG 
Sbjct: 380 RVGFDSFSSAA---SALVHMYSKCGDIENAKSVFEIL---PQPDLFSWTSLLVGYAQHGQ 433

Query: 248 REIAVR 253
            + A+ 
Sbjct: 434 HDKALH 439



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 5/115 (4%)

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             KEGKQ+HA I K      +++ NRL+ MYA CG++ DA KVF  M  RDL SWN ++ 
Sbjct: 134 ALKEGKQVHAHI-KTSGSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMIS 192

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
           G    G   +A  LF++M       D  ++  ++S C      ++ L+ + LM+ 
Sbjct: 193 GYVKGGNFEKARNLFDKMPNR----DNFSWTAIISGCVQHNRPEEALELYRLMQK 243


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  230 bits (586), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 179/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C        ++  +  +N  +WNAI +   + G GE+ALK  + MR  G+D+D 
Sbjct: 694 ITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEEALKFIARMRNDGVDLDQ 753

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F+ +  +  IG ++   EG+Q+H+ I K+G++ + +V N  + MY  CG I+D  ++   
Sbjct: 754 FSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMDMYGKCGEIDDVFRILPI 813

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              R   SWN L+   A HG+ R+A + F +M    +KPD  TF+ +LSAC H G +D+G
Sbjct: 814 PKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLSACSHGGLVDEG 873

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L YF  M ++  + P   EH   I+ LLGR+G L EAE FI+ M   P   V+++LL+AC
Sbjct: 874 LVYFSSMTSEFGV-PTAIEHCVCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSLLAAC 932

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN E+  ++A R+ +L  +D + YVL SNV  +T  W D  ++R  M ++ ++KKP 
Sbjct: 933 KVHGNLELGRKAADRLFELNSSDDSAYVLYSNVCASTQRWGDVENVRKQMESQSLKKKPA 992

Query: 303 YSWV 306
            SW+
Sbjct: 993 CSWI 996



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 113/232 (48%), Gaps = 21/232 (9%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +   DS  +   V+++++ R+ ISWN+II    + G  E++L  F  MR+     DY
Sbjct: 393 ISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDY 452

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            TI++++ A G     K G+ +H LI K G +SNV V N L+ MYA  G+  DA  VF +
Sbjct: 453 ITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHT 512

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--------C 174
           M  RDL+SWNS++      G    A+ L  +M KT    +  TF   LSAC         
Sbjct: 513 MPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEKLKIV 572

Query: 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           HA  I   + +  ++ N              +V + G+ G ++EA+     M
Sbjct: 573 HAFVIHFAVHHNLIIGN-------------TLVTMYGKFGLMDEAQKVCKIM 611



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 5/246 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+  S    Q+V+  +  RN  SWN +I+GF  +G   +A++ F  M + G+    + I
Sbjct: 192 YSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVI 251

Query: 66  TSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            S+V A        EG +Q+H  + K G  SNVFV   L+  Y   G++++ANK+F  ++
Sbjct: 252 ASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIE 311

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E ++VSW SL++  A +G+++E + ++  ++   +   G T   V+  C    F DK + 
Sbjct: 312 EPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTC--GMFGDKTMG 369

Query: 185 YFYLMRN-DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           Y  L     + L+        +++ + G    + EA    N+M      S + ++++A  
Sbjct: 370 YQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTIS-WNSIITASA 428

Query: 244 VHGNRE 249
            +G  E
Sbjct: 429 HNGRFE 434



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 130/270 (48%), Gaps = 18/270 (6%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA-IGV 74
           Q V   +  R+ ++WNA+I G  +       ++ F+ MR+ G+  +Y TI +++G  +  
Sbjct: 605 QKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSP 664

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
               K G  +HA I   G++ + +VQ+ L+ MYA CG +N ++ +F  +  ++  +WN++
Sbjct: 665 DYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAI 724

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDA 193
               AH+G   EA++   +M+   +  D  +F V L+   +   +D+G Q + ++++   
Sbjct: 725 FSANAHYGPGEEALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGF 784

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV-----YKALLSACQVHGNR 248
            L+        A + + G+ G +++    +      P P +     +  L+SA   HG  
Sbjct: 785 ELDEYV---LNATMDMYGKCGEIDDVFRIL------PIPKIRSKRSWNILISALARHGFF 835

Query: 249 EIAVRSAKRVLDLW--PNDPAIYVLLSNVS 276
             A  +   +LDL   P+      LLS  S
Sbjct: 836 RQATEAFHEMLDLGLKPDHVTFVSLLSACS 865



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 119/253 (47%), Gaps = 5/253 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  SS D + V+ ++  R+ ISWN+++A     G    A+    EM +    ++Y T 
Sbjct: 497 YAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTF 556

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+   A+      ++ K +HA +       N+ + N LV MY   G +++A KV   M E
Sbjct: 557 TT---ALSACYNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPE 613

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+V+WN+L+ G A        +Q F  M++  +  +  T + +L  C    ++ K    
Sbjct: 614 RDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMP 673

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            +     A  E       ++++ +  + G LN + S+I  +  N   S + A+ SA   +
Sbjct: 674 IHAHIVVAGFELDTYVQ-SSLITMYAQCGDLNTS-SYIFDVLANKNSSTWNAIFSANAHY 731

Query: 246 GNREIAVRSAKRV 258
           G  E A++   R+
Sbjct: 732 GPGEEALKFIARM 744



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 87/166 (52%), Gaps = 1/166 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +   N +SW +++  + + G  ++ L  +  +R  G+     T+ +++   G+   
Sbjct: 306 LFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGD 365

Query: 78  FKEGKQMHALIFKIGYD-SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
              G Q+   + K G D S+V V N L+ M+    ++ +A++VF++M ERD +SWNS++ 
Sbjct: 366 KTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIIT 425

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             AH+G   E++  F  M++T  K D  T   +L AC  A  +  G
Sbjct: 426 ASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWG 471



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 6/112 (5%)

Query: 77  GFKE------GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
           GF E      GK +HAL  K     N F  N LV MY+  G+I  A  VF  M +R+  S
Sbjct: 156 GFSEISEGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDAS 215

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           WN+++ G    G+  +A+Q F  M +  + P       +++AC  +G + +G
Sbjct: 216 WNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEG 267


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 117/311 (37%), Positives = 183/311 (58%), Gaps = 11/311 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++     D   ++S ++ +N +SW A+IAGF   G G++AL  F +MR+ GI    
Sbjct: 221 VAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSA 280

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFK---IGYDSNVFVQNRLVFMYAICGAINDANKV 119
           FT  S++ A   ++    GK++H  I +   I Y  N+F+ N L+ MY  CG +  A  +
Sbjct: 281 FTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTL 340

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M E+D+VSWNSL+ G A +G+  E++ +FE+M + +I+P+  TFL +LSACCH G +
Sbjct: 341 FKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLV 400

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS----VY 235
            +GL+    M  D  +  PR++HY  ++ LLGR   L EA   I    R P  S    ++
Sbjct: 401 SEGLRILDSMEKDYGV-CPRSDHYAIMIDLLGRNNRLEEAMGLIK---RAPKGSDHVGMW 456

Query: 236 KALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295
            ALL AC++HGN ++A R+A+ +  L P + A YV++ N+  A   WD+A  +R LM  R
Sbjct: 457 GALLGACRIHGNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAASRWDEARQVRRLMMER 516

Query: 296 GIRKKPGYSWV 306
           G+RK+   SW+
Sbjct: 517 GLRKEAACSWI 527



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 135/307 (43%), Gaps = 37/307 (12%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ--AGIDI 60
           I  YSR     +  N+   +   N +S+N++I+G  + G  +++L  F  M +  + +  
Sbjct: 87  ISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLF 146

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D FT+ S+VG+   +   +  +Q+H     IG +SN+ + N L+  Y  CG  + +  +F
Sbjct: 147 DEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIF 206

Query: 121 SSMDERDLVSWNS-------------------------------LLLGCAHHGYSREAVQ 149
           S M ERD+VSW S                               L+ G A +G   EA+ 
Sbjct: 207 SRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALH 266

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVG 208
           LFEQM++  I P   TF  VLSAC     I +G + + +++R+             A++ 
Sbjct: 267 LFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALID 326

Query: 209 LLGRAGFLNEAESFINSMSRNPGPSVYKALLS--ACQVHGNREIAVRSAKRVLDLWPNDP 266
           +  + G +  A +    M      S + +L++  A   HG   +AV       D+ PN  
Sbjct: 327 MYCKCGQMRSATTLFKGMHEKDIVS-WNSLITGFAQNGHGEESLAVFERMIEADIRPNHV 385

Query: 267 AIYVLLS 273
               LLS
Sbjct: 386 TFLGLLS 392



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 4/139 (2%)

Query: 56  AGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
           + +D  +   +S++         K GK +H+   K       F+ NRL+  Y+ C +I  
Sbjct: 8   SSLDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQS 67

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
           A+KVF  +  ++  SWN ++   +  G   EA  L +QM     KP+  ++  ++S   H
Sbjct: 68  AHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMP----KPNLVSYNSLISGLGH 123

Query: 176 AGFIDKGLQYFYLMRNDAS 194
            GF  + L  F  M    S
Sbjct: 124 HGFRKESLNVFKTMLKQCS 142


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 108/289 (37%), Positives = 181/289 (62%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  ++ +   SW AI++G+  +G    AL+ F  M+  GI+ D  ++ S++     +  
Sbjct: 205 IFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGA 264

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + GK +H    K G+  N+ V N L+ MYA CG+I+   ++F  M ERD++SW+++++G
Sbjct: 265 LELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVG 324

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A+HG +REA++LF++MQK +I+P   TF+ +L+AC HAG +++GL+YF  M+ D ++EP
Sbjct: 325 LANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEP 384

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
              EHY  +V LLG +G L++A   +  M R P   ++ +LLS+C+ HGN +IAV + + 
Sbjct: 385 G-VEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEH 443

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +L+L P D   YVLLSN+      WD    +R LM ++ ++K PG S +
Sbjct: 444 LLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSI 492



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 10/185 (5%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-----QAGIDIDYFTITSIVGAI 72
           ++  V   N   +NA+I  + +      A+  + +M      +  I  D FT   +V + 
Sbjct: 68  LFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSC 127

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
             +  +  GKQ+H  +FK G  SN  V+N LV MY  C +++DA++VF  M ERD VSWN
Sbjct: 128 AGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWN 187

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           +L+ G    G  R A  +FE+MQ   I     ++  ++S     G     L++F  M+  
Sbjct: 188 TLISGHVRLGQMRRARAIFEEMQDKTI----FSWTAIVSGYARIGCYADALEFFRRMQM- 242

Query: 193 ASLEP 197
             +EP
Sbjct: 243 VGIEP 247



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 4/171 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S    + ++  ++ R+ ISW+ +I G  N G   +A++ F EM++A I+   
Sbjct: 291 IEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSI 350

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T   ++ A        EG +   ++      +  V     LV +  + G ++ A ++  
Sbjct: 351 ITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVK 410

Query: 122 SMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            M  + D   W SLL  C  HG  + AV   E +   E++P  T   V+LS
Sbjct: 411 KMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHL--LELEPADTGNYVLLS 459


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  229 bits (585), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 186/304 (61%), Gaps = 4/304 (1%)

Query: 6   YSRCDSSL-DFQNVYSSVRTRNQISWNAIIAGFC-NLGSGEQALKCFSEMRQAGIDIDYF 63
           Y++C + + + + V+  +   + + WN +I+G+  N     +AL+CF +M++AG   D  
Sbjct: 286 YAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDC 345

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSS 122
           +    + A   +S   +GKQ HAL  K    SN + V N LV MY+ CG + DA K+F  
Sbjct: 346 SFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQR 405

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M + + V+ NS++ G A HG   E++ LFEQM    I P   T + +LSAC H G +++G
Sbjct: 406 MPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEG 465

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF +M++   +EP  AEHY+ ++ LLGRAG L+EAE  I++M  +PG + + ALL AC
Sbjct: 466 KKYFNMMKDIFGIEP-EAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGAC 524

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + +GN E+A ++A + L L P +   Y++L+++  A   W++A  IR LM +RGIRKKPG
Sbjct: 525 RKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPG 584

Query: 303 YSWV 306
            SW+
Sbjct: 585 CSWI 588



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 108/209 (51%), Gaps = 3/209 (1%)

Query: 23  RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGK 82
             R+++SWN++I  +     G +AL  + +M   G +ID FT+ S++     +     G 
Sbjct: 202 EVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGL 261

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGA-INDANKVFSSMDERDLVSWNSLLLGCAHH 141
           Q HA   K G++ N  V + L+ MYA CGA ++++ KVF  +   DLV WN+++ G + +
Sbjct: 262 QFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQN 321

Query: 142 G-YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRA 200
              S EA++ F QMQ+    PD  +F+  +SAC +     +G Q F+ +   + +   + 
Sbjct: 322 KELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQ-FHALAMKSEIPSNQI 380

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMSRN 229
               A+V +  + G L +A      M ++
Sbjct: 381 SVNNALVTMYSKCGNLQDARKLFQRMPQH 409



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 91/176 (51%), Gaps = 12/176 (6%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA---- 71
            +++  +   + +S+N +I  + + G    AL  F EMR+ G+ +D FT + ++ A    
Sbjct: 94  HHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCNH 153

Query: 72  IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDLV 129
           +G+I      +Q+H+L F  G+DS V V+N L+  Y+  G + +A  VF+ M E  RD V
Sbjct: 154 VGLI------RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEV 207

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           SWNS+++    H    +A+ L+  M     + D  T   VL+       +  GLQ+
Sbjct: 208 SWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQF 263



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 6/139 (4%)

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
           F   ++ NVF  N L+  YA    I+ A+ +F  + + DLVS+N+L+   A  G +  A+
Sbjct: 66  FNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSAL 125

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACC-HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
            LF +M++  +  DG TF  V++ACC H G I +     +    D+ +         +++
Sbjct: 126 SLFGEMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVK-----NSLL 180

Query: 208 GLLGRAGFLNEAESFINSM 226
               + G L EAE   N M
Sbjct: 181 TYYSKNGILEEAEMVFNGM 199



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 5/164 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+C +  D + ++  +   N ++ N+IIAG+   G G ++L  F +M  A I    
Sbjct: 387 VTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTS 446

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T+ SI+ A       +EGK+   ++  I G +      + ++ +    G +++A ++  
Sbjct: 447 ITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLID 506

Query: 122 SMD-ERDLVSWNSLLLGCAHHG---YSREAVQLFEQMQKTEIKP 161
           +M       +W +LL  C  +G    + +A   F Q++ T   P
Sbjct: 507 TMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVP 550


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S    + V+  +  RN ISW A+I G+      E+A++ FSEM+  GI  D FT+
Sbjct: 323 YSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTL 382

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   ++  +EG Q H L    G    + V N LV +Y  CG+I DA+++F  M  
Sbjct: 383 GSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VSW +L+ G A  G ++E + LFE+M    +KPDG TF+ VLSAC  AG ++KG  Y
Sbjct: 443 HDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDY 502

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+ D  + P   +HYT ++ L  R+G   EAE FI  M  +P    +  LLS+C++ 
Sbjct: 503 FDSMQKDHGIVPID-DHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLR 561

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN EI   +A+ +L+  P +PA YVLL ++  A   W +   +R  M +R ++K+PG SW
Sbjct: 562 GNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSW 621

Query: 306 V 306
           +
Sbjct: 622 I 622



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 141/273 (51%), Gaps = 5/273 (1%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           RC    D + ++  +  R+ I+W  ++ G    G   +AL  F  MR  G+ ID +T  S
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           I+ A G ++  +EGKQ+HA I +  Y+ NVFV + LV MY+ C +I  A  VF  M  R+
Sbjct: 284 ILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRN 343

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
           ++SW ++++G   +  S EAV+ F +MQ   IKPD  T   V+S+C +   +++G Q+  
Sbjct: 344 IISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHC 403

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN 247
           L      +      +  A+V L G+ G + +A    + MS +   S + AL++     G 
Sbjct: 404 LALVSGLMRYITVSN--ALVTLYGKCGSIEDAHRLFDEMSFHDQVS-WTALVTGYAQFGK 460

Query: 248 REIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
            +  +   +++L   L P+      +LS  S+A
Sbjct: 461 AKETIDLFEKMLANGLKPDGVTFIGVLSACSRA 493



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 107/224 (47%), Gaps = 35/224 (15%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGID 59
           L  L +SR     D + +++S+  R+ +S+NA+I GF + GS  ++++ +  + R+  + 
Sbjct: 86  LSALAHSRLVP--DMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVR 143

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
               T+++++     +S    G  +H  + ++G+ +  FV + LV MYA  G I DA +V
Sbjct: 144 PTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRV 203

Query: 120 FSSMD-------------------------------ERDLVSWNSLLLGCAHHGYSREAV 148
           F  M+                               +RD ++W +++ G   +G   EA+
Sbjct: 204 FQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEAL 263

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN 191
            +F +M+   +  D  TF  +L+AC     +++G Q + Y+ R 
Sbjct: 264 DVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRT 307



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +F    D N+F +N L+   A    + D  ++F+SM ERD VS+N+L+ G +  G    +
Sbjct: 70  VFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARS 129

Query: 148 VQLFEQMQKTE-IKPDGTTF 166
           VQL+  + + E ++P   T 
Sbjct: 130 VQLYRALLREESVRPTRITL 149



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVF 120
           Y  I S     G  +G +    +H LI K    +   F+ N L+  YA  G +  A +VF
Sbjct: 12  YAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVF 71

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M + +L + N+LL   AH     +  +LF  M +     D  ++  +++     G   
Sbjct: 72  DEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPER----DAVSYNALITGFSSTGSPA 127

Query: 181 KGLQYFYLMRNDASLEPPR 199
           + +Q +  +  + S+ P R
Sbjct: 128 RSVQLYRALLREESVRPTR 146



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C S  D   ++  +   +Q+SW A++ G+   G  ++ +  F +M   G+  D 
Sbjct: 421 VTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDG 480

Query: 63  FTITSIVGA---IGVISG----FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
            T   ++ A    G++      F   ++ H +   +  D +      ++ +Y+  G   +
Sbjct: 481 VTFIGVLSACSRAGLVEKGCDYFDSMQKDHGI---VPIDDHYTC---MIDLYSRSGRFKE 534

Query: 116 ANKVFSSMDER-DLVSWNSLLLGCAHHG 142
           A +    M    D   W +LL  C   G
Sbjct: 535 AEEFIKQMPHSPDAFGWATLLSSCRLRG 562


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 121/332 (36%), Positives = 187/332 (56%), Gaps = 32/332 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWN-------------------------------AII 34
           Y++CD+ LD  N++  +  R  ISWN                               AII
Sbjct: 140 YTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAII 199

Query: 35  AGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYD 94
           +G+  +GS   AL  F EM+ AGI+ D  +I S++ A   +   + GK +H    + G  
Sbjct: 200 SGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLL 259

Query: 95  SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
               + N L+ MY  CG I+ A ++F  M  RD++SW++++ G A+HG  REA+ +FE+M
Sbjct: 260 RRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERM 319

Query: 155 QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214
           ++T IKP+G TF+ +LSAC HAGF ++GL YF  M+ D  +E P  EHY ++V LLGRAG
Sbjct: 320 KQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIE-PEIEHYGSLVDLLGRAG 378

Query: 215 FLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSN 274
            L++A   +  M   P   ++ +LLS+C+ H N E+AV + + + +L P+D   YVLLSN
Sbjct: 379 RLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSN 438

Query: 275 VSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +      WDD   +R L+ ++ ++K PG S +
Sbjct: 439 IYADLGKWDDVSRMRKLVRSKRMKKTPGCSLI 470



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 113/272 (41%), Gaps = 42/272 (15%)

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D FT   +V A   +     GKQ+HA  FK G  S++  +N L+ MY  C  + DA+ +F
Sbjct: 94  DEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLF 153

Query: 121 SSMDERDLVSWNSLLLGCAH--------------------------HGYSR-----EAVQ 149
             M ER  +SWN ++ G                              GY+R     +A+ 
Sbjct: 154 DEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALD 213

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL 209
           +F +MQ   I+PD  + + VL AC   G ++ G         +  L   R     A++ +
Sbjct: 214 VFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLR--RTCICNALIEM 271

Query: 210 LGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN-RE-IAVRSAKRVLDLWPNDPA 267
             + G +++A    + M R      +  ++     HG  RE IA+    +  ++ PN   
Sbjct: 272 YTKCGCIDQACQLFDQM-RGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGIT 330

Query: 268 IYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
              LLS  + A   W++      LMY   ++K
Sbjct: 331 FVGLLSACAHAG-FWEEG-----LMYFDTMKK 356



 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 9/114 (7%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           E K+ HAL+ K     + F+  +++ +      ++ A+ +F  + + +   +N+++  C 
Sbjct: 3   ELKKNHALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACT 62

Query: 140 HHGYSREAVQLFEQM-------QKTE--IKPDGTTFLVVLSACCHAGFIDKGLQ 184
           H+      +  ++QM       Q +E  I PD  TF  V+ AC   G  + G Q
Sbjct: 63  HNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQ 116


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 182/301 (60%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D ++++  +  RN +SW+ +I G+  L  G +AL  F +     +D++ FT 
Sbjct: 171 YAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTF 230

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++      +  + GK +H L  K+ +DS+ FV + L+ +Y+ CG I  A +VF  +  
Sbjct: 231 SSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPT 290

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+L  WNS+L+ CA H +++    LFE+M    +KP+  +FL VL AC HAG ++KG +Y
Sbjct: 291 RNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREY 350

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LMR D  +E P  EHY ++V LLGRAG L EA S I  M   P  SV+ ALL+ C++H
Sbjct: 351 FSLMR-DYGIE-PETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIH 408

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + E+A   A R+L++  +   ++VLLSN   A   +++A  +R ++ +RG++K+ G SW
Sbjct: 409 KDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSW 468

Query: 306 V 306
           V
Sbjct: 469 V 469



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 118/248 (47%), Gaps = 11/248 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+    L    V+     ++  +W+++I+ F    +   AL+ F  M   G+  D    
Sbjct: 70  YSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIY 129

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S   A G +     GK +H L  K GY  +VFV + LV MYA CG I DA  +F  M E
Sbjct: 130 PSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPE 189

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++VSW+ ++ G A      EA+ LF+Q    ++  +  TF  V+  C  + F++ G   
Sbjct: 190 RNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLI 249

Query: 186 FYL---MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM-SRNPGPSVYKALLSA 241
             L   M  D+S     +   +A++ L  + G +  A    + + +RN G  ++ ++L A
Sbjct: 250 HGLCLKMSFDSS-----SFVGSALISLYSKCGVIEGAYQVFDEIPTRNLG--LWNSMLIA 302

Query: 242 CQVHGNRE 249
           C  H + +
Sbjct: 303 CAQHAHTQ 310



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 1/167 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C        V+  + TRN   WN+++         ++    F EM   G+  ++
Sbjct: 269 ISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNF 328

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            +  S++ A       ++G++  +L+   G +        LV +    G + +A  V   
Sbjct: 329 ISFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQ 388

Query: 123 MDERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
           M  R   S W +LL GC  H  +  A  + +++ + +    G   L+
Sbjct: 389 MPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLL 435



 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 3/129 (2%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           + Q   + +Y  I +++ +       ++G Q+HA I K G  +   V + L+ +Y+    
Sbjct: 16  LNQNSFEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQL 75

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
              + +VF    ++   +W+S++   A +     A+Q F +M    ++PD   +     A
Sbjct: 76  PLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKA 135

Query: 173 CCHAGFIDK 181
           C   GF+ +
Sbjct: 136 C---GFLRR 141


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S    + V+  +  RN ISW A+I G+      E+A++ FSEM+  GI  D FT+
Sbjct: 323 YSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTL 382

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   ++  +EG Q H L    G    + V N LV +Y  CG+I DA+++F  M  
Sbjct: 383 GSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VSW +L+ G A  G ++E + LFE+M    +KPDG TF+ VLSAC  AG ++KG  Y
Sbjct: 443 HDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDY 502

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+ D  + P   +HYT ++ L  R+G   EAE FI  M  +P    +  LLS+C++ 
Sbjct: 503 FDSMQKDHGIVPID-DHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLR 561

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN EI   +A+ +L+  P +PA YVLL ++  A   W +   +R  M +R ++K+PG SW
Sbjct: 562 GNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSW 621

Query: 306 V 306
           +
Sbjct: 622 I 622



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 2/220 (0%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           RC    D + ++  +  R+ I+W  ++ G    G   +AL  F  MR  G+ ID +T  S
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           I+ A G ++  +EGKQ+HA I +  Y+ NVFV + LV MY+ C +I  A  VF  M  R+
Sbjct: 284 ILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRN 343

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
           ++SW ++++G   +  S EAV+ F +MQ   IKPD  T   V+S+C +   +++G Q+  
Sbjct: 344 IISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHC 403

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
           L      +      +  A+V L G+ G + +A    + MS
Sbjct: 404 LALVSGLMRYITVSN--ALVTLYGKCGSIEDAHRLFDEMS 441



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 107/224 (47%), Gaps = 35/224 (15%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGID 59
           L  L +SR     D + +++S+  R+ +S+NA+I GF + GS  ++++ +  + R+  + 
Sbjct: 86  LSALAHSRLVP--DMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVR 143

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
               T+++++     +S    G  +H  + ++G+ +  FV + LV MYA  G I DA +V
Sbjct: 144 PTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRV 203

Query: 120 FSSMD-------------------------------ERDLVSWNSLLLGCAHHGYSREAV 148
           F  M+                               +RD ++W +++ G   +G   EA+
Sbjct: 204 FQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEAL 263

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN 191
            +F +M+   +  D  TF  +L+AC     +++G Q + Y+ R 
Sbjct: 264 DVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRT 307



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +F    D N+F +N L+   A    + D  ++F+SM ERD VS+N+L+ G +  G    +
Sbjct: 70  VFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARS 129

Query: 148 VQLFEQMQKTE-IKPDGTTF 166
           VQL+  + + E ++P   T 
Sbjct: 130 VQLYRALLREESVRPTRITL 149



 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVF 120
           Y  I S     G  +G +    +H LI K    +   F+ N L+  YA  G +  A +VF
Sbjct: 12  YAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVF 71

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M + +L + N+LL   AH     +  +LF  M +     D  ++  +++     G   
Sbjct: 72  DEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPER----DAVSYNALITGFSSTGSPA 127

Query: 181 KGLQYFYLMRNDASLEPPR 199
           + +Q +  +  + S+ P R
Sbjct: 128 RSVQLYRALLREESVRPTR 146



 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C S  D   ++  +   +Q+SW A++ G+   G  ++ +  F +M   G+  D 
Sbjct: 421 VTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDG 480

Query: 63  FTITSIVGA---IGVISG----FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
            T   ++ A    G++      F   ++ H +   +  D +      ++ +Y+  G   +
Sbjct: 481 VTFIGVLSACSRAGLVEKGCDYFDSMQKDHGI---VPIDDHYTC---MIDLYSRSGRFKE 534

Query: 116 ANKVFSSMDER-DLVSWNSLLLGCAHHG 142
           A +    M    D   W +LL  C   G
Sbjct: 535 AEEFIKQMPHSPDAFGWATLLSSCRLRG 562


>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S  D   ++ S    +++S   I+ G    G  E++++ F +M + G+ ID   I
Sbjct: 188 YSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMI 247

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++I+G  G+ +    GKQ+H+LI K  + SN FV N L+ MY+ CG ++D+ K+F  M +
Sbjct: 248 SAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQ 307

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWNS++   A HG    A+QL+E+M+   + P   TFL +L AC H G ++KG+ +
Sbjct: 308 RNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGF 367

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M  D  +  PR EHY  +V ++GRAG LNEA+ FI  +   PG  V++ALL AC +H
Sbjct: 368 LESMAKDYGI-GPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSIH 426

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+   +A ++    P  PA Y+LL+N+  +   W +       M + G+ K+ G SW
Sbjct: 427 GNSEMGKYAANQLFLQAPESPAPYILLANIYSSEGKWKERARTIKKMKDMGVTKETGISW 486

Query: 306 V 306
           +
Sbjct: 487 I 487



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 143/308 (46%), Gaps = 27/308 (8%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y RC      + V+  +  +N ++W A+I+G       E++LK F +MR   +D + 
Sbjct: 84  ITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNS 143

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S + A   +   +EG+Q+H L++K+G   ++ +++ L+ MY+ CG++ DA K+F S
Sbjct: 144 LTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFES 203

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD-----------GTTFLVVLS 171
            +E D VS   +L+G A +G+  E++Q+F +M K  +  D           G    + L 
Sbjct: 204 AEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALG 263

Query: 172 ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPG 231
              H+  I K     Y + N              ++ +  + G L+++      M +   
Sbjct: 264 KQIHSLIIKKSFGSNYFVNN-------------GLINMYSKCGDLDDSIKIFCWMPQRNS 310

Query: 232 PSVYKALLSACQVHGN--REIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIR 289
            S + ++++A   HGN  R + +    R+  +WP D     LL   +         G + 
Sbjct: 311 VS-WNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLE 369

Query: 290 TLMYNRGI 297
           ++  + GI
Sbjct: 370 SMAKDYGI 377



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 86/161 (53%), Gaps = 1/161 (0%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-DIDYFTITSIVGAIGVISGFKEGKQ 83
           ++ ISWN+ I+G    G  E   + F ++ ++GI   D  T+T+++ A          K 
Sbjct: 4   KDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYVSKM 63

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +H+L+F  GY+  + V N L+  Y  CG  +   +VF  M E+++V+W +++ G +   +
Sbjct: 64  IHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQF 123

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             E+++LF +M+   + P+  T+L  L AC     I +G Q
Sbjct: 124 YEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQ 164


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 177/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  + ++++     R+ +SW A+I  +   G  E+    FS++ ++GI  + FT 
Sbjct: 267 YGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTF 326

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + ++ A    +  + GKQ+H  + +IG+D + F  + LV MY  CG I +A +VF+ M  
Sbjct: 327 SGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPR 386

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            DLVSW SL+ G A +G   EA+Q FE + K+  +PD  TF+ VLSAC HAG +DKGL+Y
Sbjct: 387 PDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEY 446

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  ++    L    A+HY  ++ LL R+G L EAE  I+ M   P   ++ +LL  C++H
Sbjct: 447 FDSIKEKHGLTHT-ADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIH 505

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN ++A R+A+ + ++ P +PA Y  L+N+      W    ++R +M  RG+ KKPG SW
Sbjct: 506 GNLKLAKRAAEALFEIEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGLSW 565

Query: 306 V 306
           +
Sbjct: 566 I 566



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 6/255 (2%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGID 59
           + I  Y++     + + ++  +  R+  SW A+ +G+      E+AL+ F  M R     
Sbjct: 160 IMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFK 219

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            + FT++S + A   I     GK++H  I +IG D +  V + L  MY  CG+I +A  +
Sbjct: 220 CNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHI 279

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F    +RD+VSW +++      G   E   LF  + K+ I P+  TF  VL+AC      
Sbjct: 280 FDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAE 339

Query: 180 DKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
           + G Q + Y+ R       P +   + +V +  + G +  A    N M R P    + +L
Sbjct: 340 ELGKQVHGYMTRIGFD---PSSFAASTLVHMYTKCGNIKNARRVFNGMPR-PDLVSWTSL 395

Query: 239 LSACQVHGNREIAVR 253
           +S    +G  + A++
Sbjct: 396 ISGYAQNGQPDEALQ 410



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%)

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +    EG ++HA     G+   V + NR++ MY  C ++ +A ++F  M ERDL SWN +
Sbjct: 102 LRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIM 161

Query: 135 LLGCAHHGYSREAVQLFEQMQKTE 158
           + G A  G  +EA +LF+QM + +
Sbjct: 162 ISGYAKAGRLQEARKLFDQMTERD 185


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 176/302 (58%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFT 64
           Y+R    L+   ++     +N  +W A+I+G    G+   AL  F EMR+ G+ I D   
Sbjct: 187 YARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLV 246

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++S+VGA    +  + GKQ+H ++  +GY+S +F+ N LV MYA C  +  A  +F  M 
Sbjct: 247 LSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMR 306

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +D+VSW S+++G A HG + EA+ L++ M    +KP+  TF+ ++ AC H G + KG  
Sbjct: 307 RKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRA 366

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M  D  +  P  +HYT ++ L  R+G L+EAE+ I +M   P    + ALLSAC+ 
Sbjct: 367 LFKSMVEDFGIR-PSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKH 425

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN ++AVR A  +LDL P DP+ Y+LLSN+      W++   +R LM  + ++K PGYS
Sbjct: 426 HGNTKMAVRIADHLLDLKPEDPSSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYS 485

Query: 305 WV 306
            V
Sbjct: 486 CV 487



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 8/193 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGS-GEQALKCFSEMRQAGIDID 61
           I  Y +C    D   ++ ++  ++ ++W  +++  CNL +   +A      +   G+  D
Sbjct: 50  IDAYGKCGLLKDALKLFDALPQQDHVAWATVLSA-CNLSNLPHKAFSISLPILHEGLQPD 108

Query: 62  YFTITSIVGAIGVISGF--KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           +F  +S++ A   +     K GKQ+HA      +  +  V++ LV MYA     +    V
Sbjct: 109 HFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAV 168

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F S+ E   +SW +++ G A  G   EA++LF +     +      +  ++S    +G  
Sbjct: 169 FDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNL----YAWTALISGLVQSGNA 224

Query: 180 DKGLQYFYLMRND 192
           +  L  F  MR +
Sbjct: 225 NDALYLFVEMRRE 237



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 49/99 (49%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
            K++HA I K G + +      L+  Y  CG + DA K+F ++ ++D V+W ++L  C  
Sbjct: 27  AKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNL 86

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
                +A  +   +    ++PD   F  ++ AC + G +
Sbjct: 87  SNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSV 125


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 178/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      ++++   + +N  SWN +I G     + E+AL  F EM+  GI  D  T+
Sbjct: 232 YCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTM 291

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +   + GK +HA I K   D +V +   LV MYA CG+I  A +VF  M E
Sbjct: 292 ASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPE 351

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+++W +L+LG A  G +  A+Q F++M    +KPD  TF+ VL+AC HAGF+D+G+ +
Sbjct: 352 KDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISH 411

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M +   ++P   EHY  +V +LGRAG + EAE  I SM   P   V   LL AC++H
Sbjct: 412 FNSMSDTYGIQPT-IEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIH 470

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E A R+AK++L++ P     YVLLSN+ K++  W++A   R LM  RG+RK PG S 
Sbjct: 471 GNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQ 530

Query: 306 V 306
           +
Sbjct: 531 I 531



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 4/160 (2%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+S +      + N+II G  +    ++AL  + EM   G+  D +T  S+  +    S 
Sbjct: 44  VFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSS- 102

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             EGKQ+H    K+G+ S+ + QN L+ MY+ CG +  A KVF  M+++ +VSW +++  
Sbjct: 103 --EGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGV 160

Query: 138 CAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHA 176
            A      EAV+LF++M K+E +KP+  T + VL+AC  A
Sbjct: 161 HAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARA 200



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 5/223 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFT 64
           YS C   +  + V+  +  +  +SW  +I          +A++ F  M +   +  +  T
Sbjct: 130 YSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVT 189

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + +++ A          K++H  I + G+  +V +   L+ +Y  CG +  A  +F    
Sbjct: 190 LVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQ 249

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL- 183
           E++L SWN ++ G        EA+ LF +MQ   IK D  T   +L AC H G ++ G  
Sbjct: 250 EKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKW 309

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
            + Y+ +    ++       TA+V +  + G +  A    + M
Sbjct: 310 LHAYIKKQRIDVDVALG---TALVDMYAKCGSIETAIQVFHEM 349



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAI--CGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           KQ+HA + + G   + F  +++V   ++   G++  A  VFS +      + NS++ GC 
Sbjct: 5   KQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
                +EA+  +++M    + PD  TF  +  +C
Sbjct: 65  DKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSC 98


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S    + V+  +  RN ISW A+I G+      E+A++ FSEM+  GI  D FT+
Sbjct: 323 YSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTL 382

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   ++  +EG Q H L    G    + V N LV +Y  CG+I DA+++F  M  
Sbjct: 383 GSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VSW +L+ G A  G ++E + LFE+M    +KPDG TF+ VLSAC  AG ++KG  Y
Sbjct: 443 HDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDY 502

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+ D  + P   +HYT ++ L  R+G   EAE FI  M  +P    +  LLS+C++ 
Sbjct: 503 FDSMQKDHDIVPID-DHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLR 561

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN EI   +A+ +L+  P +PA YVLL ++  A   W +   +R  M +R ++K+PG SW
Sbjct: 562 GNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSW 621

Query: 306 V 306
           +
Sbjct: 622 I 622



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 141/273 (51%), Gaps = 5/273 (1%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           RC    D + ++  +  R+ I+W  ++ G    G   +AL  F  MR  G+ ID +T  S
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           I+ A G ++  +EGKQ+HA I +  Y+ NVFV + LV MY+ C +I  A  VF  M  R+
Sbjct: 284 ILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRN 343

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
           ++SW ++++G   +  S EAV+ F +MQ   IKPD  T   V+S+C +   +++G Q+  
Sbjct: 344 IISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHC 403

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN 247
           L      +      +  A+V L G+ G + +A    + MS +   S + AL++     G 
Sbjct: 404 LALVSGLMRYITVSN--ALVTLYGKCGSIEDAHRLFDEMSFHDQVS-WTALVTGYAQFGK 460

Query: 248 REIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
            +  +   +++L   L P+      +LS  S+A
Sbjct: 461 AKETIDLFEKMLVNGLKPDGVTFIGVLSACSRA 493



 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 106/224 (47%), Gaps = 35/224 (15%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGID 59
           L  L +SR     D + +++S+  R+ +S+NA+I GF + GS  ++++ +  + R+  + 
Sbjct: 86  LSALAHSRLVP--DMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVR 143

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
               T+++++     +S    G  +H  + ++G+ +  FV + LV MYA  G I DA +V
Sbjct: 144 PTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRV 203

Query: 120 FSSMD-------------------------------ERDLVSWNSLLLGCAHHGYSREAV 148
           F  M+                               +RD ++W +++ G   +G   EA+
Sbjct: 204 FQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEAL 263

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN 191
            +F +M+   +  D  TF  +L+AC      ++G Q + Y+ R 
Sbjct: 264 DVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRT 307



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +F    D N+F +N L+   A    + D  ++F+SM ERD VS+N+L+ G +  G    +
Sbjct: 70  VFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARS 129

Query: 148 VQLFEQMQKTE-IKPDGTTF 166
           VQL+  + + E ++P   T 
Sbjct: 130 VQLYRALLREESVRPTRITL 149



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVF 120
           Y  I S     G  +G +    +H LI K    +   F+ N L+  YA  G +  A +VF
Sbjct: 12  YAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVF 71

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M + +L + N+LL   AH     +  +LF  M +     D  ++  +++     G   
Sbjct: 72  DEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPER----DAVSYNALITGFSSTGSPA 127

Query: 181 KGLQYFYLMRNDASLEPPR 199
           + +Q +  +  + S+ P R
Sbjct: 128 RSVQLYRALLREESVRPTR 146



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 8/145 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C S  D   ++  +   +Q+SW A++ G+   G  ++ +  F +M   G+  D 
Sbjct: 421 VTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDG 480

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR----LVFMYAICGAINDANK 118
            T   ++ A       ++G      + K   D ++   +     ++ +Y+  G   +A +
Sbjct: 481 VTFIGVLSACSRAGLVEKGCDYFDSMQK---DHDIVPIDDHYTCMIDLYSRSGRFKEAEE 537

Query: 119 VFSSMDER-DLVSWNSLLLGCAHHG 142
               M    D   W +LL  C   G
Sbjct: 538 FIKQMPHSPDAFGWATLLSSCRLRG 562


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 117/301 (38%), Positives = 173/301 (57%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    +    +  +  R+ I+WN +IAG+    +  ++L  FS M   G   + FT 
Sbjct: 240 YCRCSCFSEANRYFYEMNQRDLITWNTLIAGY-ERSNPTESLYVFSMMESEGFSPNCFTF 298

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI+ A   ++    G+Q+H  I + G D N+ + N L+ MY+ CG I D+++VF  M  
Sbjct: 299 TSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSR 358

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDLVSW ++++G   HGY  EAV+LF++M ++ I+PD   F+ +LSAC HAG +D+GL+Y
Sbjct: 359 RDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRY 418

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM  D ++ P + E Y  +V LLGRAG + EA   I SM   P   V+   L AC+ H
Sbjct: 419 FKLMVGDYNISPDQ-EIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGACKAH 477

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
               +   +A R+LDL P+    YV+LSN+  A   W +   +R LM   G +K+ G SW
Sbjct: 478 TFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAADGKWGEFARLRKLMKRMGNKKETGRSW 537

Query: 306 V 306
           V
Sbjct: 538 V 538



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 141/283 (49%), Gaps = 21/283 (7%)

Query: 6   YSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y+ C  S+D    V+  +  +N++SW  +IAG+ +   G   L+ F +M    ++++ F+
Sbjct: 138 YATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFS 197

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +  V A   I     G+Q+HA + K G++SN+ V N ++ MY  C   ++AN+ F  M+
Sbjct: 198 FSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMN 257

Query: 125 ERDLVSWNSLLLGCAHHGYSR----EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           +RDL++WN+L+      GY R    E++ +F  M+     P+  TF  +++AC    F++
Sbjct: 258 QRDLITWNTLIA-----GYERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLN 312

Query: 181 KGLQ-YFYLMRN--DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
            G Q +  ++R   D +L         A++ +  + G + ++      MSR    S + A
Sbjct: 313 CGQQIHGRIIRRGLDGNLALS-----NALIDMYSKCGNIADSHQVFGGMSRRDLVS-WTA 366

Query: 238 LLSACQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
           ++     HG  E AV    +++   + P+      +LS  S A
Sbjct: 367 MMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHA 409



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 1/146 (0%)

Query: 33  IIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIG 92
           +IAG+ +  +   A   F EM    +D + FTI+S++ A   +     G+ +H L  K G
Sbjct: 64  MIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHG 123

Query: 93  YDSNVFVQNRLVFMYAICG-AINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLF 151
            D  ++V N L+ MYA C  +++DA  VF  +  ++ VSW +L+ G  H       +++F
Sbjct: 124 LDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVF 183

Query: 152 EQMQKTEIKPDGTTFLVVLSACCHAG 177
            QM   E++ +  +F + + AC   G
Sbjct: 184 RQMLLEEVELNPFSFSIAVRACTSIG 209


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 182/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+RC    +    +  +  +N ISWN++++G    G  E+AL+ F  M +   +++ 
Sbjct: 606 ISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNM 665

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S + A   ++  K+G+Q+H+++ K GYDS   V N L+ +YA  G+I+DA + F+ 
Sbjct: 666 FTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFND 725

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER+++SWN+++ G + HG   EA++LFE+M+   I P+  TF+ VLSAC H G + +G
Sbjct: 726 MSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEG 785

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L YF  M     L  P++EHY  +V LLGRAG L+ A  +I  M       +++ LLSAC
Sbjct: 786 LDYFESMFKIHDL-VPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSAC 844

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            +H N EI  R+A  +L+L P D A YVL+SN+   +  W      R LM + G++K+PG
Sbjct: 845 VIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPG 904

Query: 303 YSWV 306
            SW+
Sbjct: 905 RSWI 908



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 101/169 (59%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V++ +  ++ ++W A+I+G    G  E+A+  F +M  + I    + ++S++ A   I
Sbjct: 215 KKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKI 274

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             F+ G+Q+H L+ K G+ S  +V N LV +Y+    +  A ++FS+M+ RD VS+NSL+
Sbjct: 275 QLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLI 334

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G    G+S  A++LF +MQ+  +KPD  T   +LSAC   G + KG+Q
Sbjct: 335 SGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQ 383



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 126/251 (50%), Gaps = 5/251 (1%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SW A+IAG+       +AL+ F EM   GI  D     S + A   I   ++G+Q+HA 
Sbjct: 530 VSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQ 589

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
            +  G+ +++ + N L+ +YA CG I +A   F  + +++ +SWNSL+ G A  GY  EA
Sbjct: 590 SYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEA 649

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           +Q+F +M +TE + +  T+   +SA      I +G Q  + M      +  R E   +++
Sbjct: 650 LQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQG-QQIHSMVLKTGYDSER-EVSNSLI 707

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR--SAKRVLDLWPND 265
            L  ++G +++A    N MS     S + A+++    HG    A+R     +V  + PN 
Sbjct: 708 SLYAKSGSISDAWREFNDMSERNVIS-WNAMITGYSQHGCGMEALRLFEEMKVCGIMPNH 766

Query: 266 PAIYVLLSNVS 276
                +LS  S
Sbjct: 767 VTFVGVLSACS 777



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C         +    T N + WN ++  +  L +   + + F +M+  G+  + FT 
Sbjct: 407 YSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTY 466

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+     +     G+Q+H  + K G+  NV+V + L+ MYA  G +  A ++   + E
Sbjct: 467 PSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPE 526

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            D+VSW +++ G   H    EA+QLFE+M+   I+ D   F   +SAC     + +G Q 
Sbjct: 527 DDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQI 586

Query: 185 ----YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
               Y      D S+         A++ L  R G + EA
Sbjct: 587 HAQSYAAGFGADLSIN-------NALISLYARCGRIQEA 618



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 97/182 (53%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YSR    +  + ++S++ +R+ +S+N++I+G    G  ++AL+ F++M++  +  D 
Sbjct: 303 VALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDC 362

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ A   +    +G Q+H+   K G  +++ ++  L+ +Y+ C  +  A+K F  
Sbjct: 363 ITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLX 422

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            +  ++V WN +L+         ++ ++F QMQ   + P+  T+  +L  C   G +  G
Sbjct: 423 TETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLG 482

Query: 183 LQ 184
            Q
Sbjct: 483 EQ 484



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 8/232 (3%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA-IGVIS 76
           V+     R+  SWN +I  F    S  Q    F  M   GI  + +T   ++ A +G   
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDI 174

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            F   KQ+H+  F  G+DS+  V N L+ +Y+  G I  A KVF+ +  +D+V+W +++ 
Sbjct: 175 AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMIS 234

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G + +G   EA+ LF  M  +EI P       VLSA       + G Q   L+       
Sbjct: 235 GLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGF-- 292

Query: 197 PPRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
              +E Y    +V L  R+  L  AE   ++M+   G S Y +L+S     G
Sbjct: 293 --HSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVS-YNSLISGLVQQG 341



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 43/94 (45%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           E  ++H  I K G+D    + + LV  Y   G  + A KVF     R + SWN ++    
Sbjct: 76  ETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFV 135

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
               + +   LF +M    I P+G TF  VL AC
Sbjct: 136 AQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKAC 169


>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S  D   ++ S    +++S   I+ G    G  E++++ F +M + G+ ID   I
Sbjct: 302 YSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMI 361

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++I+G  G+ +    GKQ+H+LI K  + SN FV N L+ MY+ CG ++D+ K+F  M +
Sbjct: 362 SAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQ 421

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWNS++   A HG    A+QL+E+M+   + P   TFL +L AC H G ++KG+ +
Sbjct: 422 RNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGF 481

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M  D  +  PR EHY  +V ++GRAG LNEA+ FI  +   PG  V++ALL AC +H
Sbjct: 482 LESMAKDYGI-GPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSIH 540

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+   +A ++    P  PA Y+LL+N+  +   W +       M + G+ K+ G SW
Sbjct: 541 GNSEMGKYAANQLFLQAPESPAPYILLANIYSSEGKWKERARTIKKMKDMGVTKETGISW 600

Query: 306 V 306
           +
Sbjct: 601 I 601



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 143/308 (46%), Gaps = 27/308 (8%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y RC      + V+  +  +N ++W A+I+G       E++LK F +MR   +D + 
Sbjct: 198 ITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNS 257

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S + A   +   +EG+Q+H L++K+G   ++ +++ L+ MY+ CG++ DA K+F S
Sbjct: 258 LTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFES 317

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD-----------GTTFLVVLS 171
            +E D VS   +L+G A +G+  E++Q+F +M K  +  D           G    + L 
Sbjct: 318 AEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALG 377

Query: 172 ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPG 231
              H+  I K     Y + N              ++ +  + G L+++      M +   
Sbjct: 378 KQIHSLIIKKSFGSNYFVNN-------------GLINMYSKCGDLDDSIKIFCWMPQRNS 424

Query: 232 PSVYKALLSACQVHGN--REIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIR 289
            S + ++++A   HGN  R + +    R+  +WP D     LL   +         G + 
Sbjct: 425 VS-WNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLE 483

Query: 290 TLMYNRGI 297
           ++  + GI
Sbjct: 484 SMAKDYGI 491



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 1/180 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-DIDYFT 64
           YSRC    D   V+  +  ++ ISWN+ I+G    G  E   + F ++ ++GI   D  T
Sbjct: 99  YSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQAT 158

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +T+++ A          K +H+L+F  GY+  + V N L+  Y  CG  +   +VF  M 
Sbjct: 159 LTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMS 218

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E+++V+W +++ G +   +  E+++LF +M+   + P+  T+L  L AC     I +G Q
Sbjct: 219 EKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQ 278



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 20/155 (12%)

Query: 50  FSEMRQAGID-IDYFTITSIVGAIGVISGFKEGKQMHALIFK-IGY-DSN--------VF 98
           +SE  +  I+ +D   + S+ G  G +     G  +HA I K  G+ D N        + 
Sbjct: 34  YSETSKFAINQVDISFLLSLCGREGYL---HLGSSLHASIIKNFGFLDGNNRDNLRNVIV 90

Query: 99  VQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
           V N L+ MY+ CG + DA KVF  M  +D +SWNS + G   +G      ++F+Q+ ++ 
Sbjct: 91  VWNSLLSMYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESG 150

Query: 159 I-KPDGTTFLVVLSAC-----CHAGFIDKGLQYFY 187
           I + D  T   VL+AC     C+   +   L + Y
Sbjct: 151 IYQFDQATLTTVLTACDKPEFCYVSKMIHSLVFLY 185


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 181/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+ C  +     V+ ++  R+ I WN+++AG    GS ++AL  F  M  +GI    
Sbjct: 215 IDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMP 274

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T +S++ A G ++    GKQ+HA + + G+D NVF+ + L+ MY  CG ++ A ++F  
Sbjct: 275 VTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDR 334

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +   D+VSW ++++G A HG +REA+ LF++M+   +KP+  TFL VL+AC HAG +DKG
Sbjct: 335 IQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKG 394

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M +   +  P  EH+ A+   LGR G L EA +FI+ M   P  SV+  LL AC
Sbjct: 395 WKYFNSMSDHYGIV-PSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRAC 453

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH N  +A   AK++ DL P     +++LSN   ++  W++A  +R  M  +G++K+P 
Sbjct: 454 KVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPA 513

Query: 303 YSWV 306
            SW+
Sbjct: 514 CSWI 517



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 95/176 (53%), Gaps = 1/176 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  ++ +SWN ++ G    G   +AL    EM + G   D FT++S++      
Sbjct: 127 RKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEG 186

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  + G ++H    + G+  +VFV + L+ MYA C   + + KVF ++  RD + WNS+L
Sbjct: 187 ADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSML 246

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMR 190
            GCA +G   EA+ LF +M  + IKP   TF  ++ AC +   +  G Q + Y++R
Sbjct: 247 AGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIR 302



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 19/182 (10%)

Query: 29  SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI-TSIVGAIGVISGF---KEGKQM 84
           SW   I    + G    A+  F  MR +       ++ TS+ GA+   +       G  +
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGA--------------INDANKVFSSMDERDLVS 130
           HAL  + G  ++ F  N L+ +Y    A              +    KVF  M E+D+VS
Sbjct: 81  HALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVS 140

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLM 189
           WN+L+LGCA  G   EA+ L  +M +   KPD  T   VL        + +G++ + +  
Sbjct: 141 WNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFAT 200

Query: 190 RN 191
           RN
Sbjct: 201 RN 202


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/301 (38%), Positives = 173/301 (57%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    +    +  +  R+ I+WN +IAG+    +  ++L  FS M   G   + FT 
Sbjct: 256 YCRCSCFSEANRYFYEMNQRDLITWNTLIAGY-ERSNPTESLYVFSMMESEGFSPNCFTF 314

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI+ A   ++    G+Q+H  I + G D N+ + N L+ MY+ CG I D+++VF  M  
Sbjct: 315 TSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSR 374

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDLVSW ++++G   HGY  EAV+LF++M ++ I+PD   F+ +LSAC HAG +D+GL+Y
Sbjct: 375 RDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRY 434

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM  D ++ P + E Y  +V LLGRAG + EA   I SM   P   V+   L AC+ H
Sbjct: 435 FKLMVGDYNISPDQ-EIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGACKAH 493

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
               +   +A R+LDL P+    YV+LSN+  A   W +   +R LM   G +K+ G SW
Sbjct: 494 TFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAADGKWGEFARLRKLMKRMGNKKETGRSW 553

Query: 306 V 306
           V
Sbjct: 554 V 554



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 141/283 (49%), Gaps = 21/283 (7%)

Query: 6   YSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y+ C  S+D    V+  +  +N++SW  +IAG+ +   G   L+ F +M    ++++ F+
Sbjct: 154 YATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFS 213

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +  V A   I     G+Q+HA + K G++SN+ V N ++ MY  C   ++AN+ F  M+
Sbjct: 214 FSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMN 273

Query: 125 ERDLVSWNSLLLGCAHHGYSR----EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           +RDL++WN+L+      GY R    E++ +F  M+     P+  TF  +++AC    F++
Sbjct: 274 QRDLITWNTLIA-----GYERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLN 328

Query: 181 KGLQ-YFYLMRN--DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
            G Q +  ++R   D +L         A++ +  + G + ++      MSR    S + A
Sbjct: 329 CGQQIHGRIIRRGLDGNLALS-----NALIDMYSKCGNIADSHQVFGGMSRRDLVS-WTA 382

Query: 238 LLSACQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
           ++     HG  E AV    +++   + P+      +LS  S A
Sbjct: 383 MMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHA 425



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 1/163 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R+ ++W  +IAG+ +  +   A   F EM    +D + FTI+S++ A   +
Sbjct: 63  RTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKGM 122

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICG-AINDANKVFSSMDERDLVSWNSL 134
                G+ +H L  K G D  ++V N L+ MYA C  +++DA  VF  +  ++ VSW +L
Sbjct: 123 KCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTL 182

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           + G  H       +++F QM   E++ +  +F + + AC   G
Sbjct: 183 IAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIG 225



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 31/63 (49%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G I +A  +F  M ERD+V+W  ++ G         A  +F +M   E+ P+  T   VL
Sbjct: 57  GLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVL 116

Query: 171 SAC 173
            AC
Sbjct: 117 KAC 119


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 177/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS CDS     +V+S + TR+ + WN+II+     G    AL    EM  + ++++ 
Sbjct: 541 ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNT 600

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S + A   ++  ++GK++H  I + G D+  F+ N L+ MY  CG+I  + ++F  
Sbjct: 601 VTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDL 660

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M +RDLVSWN ++     HG+  +AV LF+  +   +KP+  TF  +LSAC H+G I++G
Sbjct: 661 MPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEG 720

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF +M+ + +++P   E Y  +V LL RAG  NE   FI  M   P  +V+ +LL AC
Sbjct: 721 WKYFKMMKTEYAMDPA-VEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGAC 779

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N ++A  +A+ + +L P     YVL++N+  A   W+DA  IR LM  RG+ K PG
Sbjct: 780 RIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPG 839

Query: 303 YSWV 306
            SW+
Sbjct: 840 CSWI 843



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 130/271 (47%), Gaps = 12/271 (4%)

Query: 11  SSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVG 70
           S + FQ +   +     I+WN ++ GF   G G+ AL+ F  M   G+D +  TI+  + 
Sbjct: 453 SEMKFQGIEPDI-----ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALA 507

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
           A G +   K GK++H  + +   + +  V + L+ MY+ C ++  A  VFS +  RD+V 
Sbjct: 508 ACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVV 567

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLM 189
           WNS++  CA  G S  A+ L  +M  + ++ +  T +  L AC     + +G + + +++
Sbjct: 568 WNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFII 627

Query: 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNRE 249
           R    L+        +++ + GR G + ++    + M +    S +  ++S   +HG   
Sbjct: 628 R--CGLDTCNF-ILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVS-WNVMISVYGMHGFGM 683

Query: 250 IAVRSAK--RVLDLWPNDPAIYVLLSNVSKA 278
            AV   +  R + L PN      LLS  S +
Sbjct: 684 DAVNLFQXFRTMGLKPNHITFTNLLSACSHS 714



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 111/232 (47%), Gaps = 4/232 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +  RN  SW AI+  +C LG  E+ +K F  M   G+  D+F    +  A  
Sbjct: 142 DARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACS 201

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +  ++ GK ++  +  IG++ N  V+  ++ M+  CG ++ A + F  ++ +D+  WN 
Sbjct: 202 ELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNI 261

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G    G  ++A++    M+ + +KPD  T+  ++S    +G  ++  +YF  M    
Sbjct: 262 MVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLK 321

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM---SRNPGPSVYKALLSAC 242
             + P    +TA++    + G+  EA S    M      P      + +SAC
Sbjct: 322 DFK-PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 97/190 (51%), Gaps = 6/190 (3%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N +SW A+IAG    G   +AL  F +M   G+  +  TI S V A   +S  + G+++H
Sbjct: 326 NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIH 385

Query: 86  ALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
               K+   DS++ V N LV  YA C ++  A + F  + + DLVSWN++L G A  G  
Sbjct: 386 GYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSH 445

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
            EA++L  +M+   I+PD  T+  +++     G     L++F  M +   ++P    + T
Sbjct: 446 EEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM-HSMGMDP----NTT 500

Query: 205 AIVGLLGRAG 214
            I G L   G
Sbjct: 501 TISGALAACG 510



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G Q+HA +   G D   F+ +RL+ +Y   G + DA ++F  M ER++ SW +++     
Sbjct: 108 GFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCG 167

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            G   E ++LF  M    ++PD   F  V  AC
Sbjct: 168 LGDYEETIKLFYLMVNEGVRPDHFVFPKVFKAC 200


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 177/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +  S  + + V  ++R RN ++WN +IAG    G  E  L  ++ M+ +G+  D  T+
Sbjct: 134 YMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITL 193

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   ++   +G+Q+HA   K G +S V V + L+ MY+ CG + D+ K     + 
Sbjct: 194 VSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEH 253

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D V W+S++     HG   EAV LFEQM++  +  +  TFL +L AC H G  +KG+ +
Sbjct: 254 PDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGF 313

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM     L+ PR EHYT +V LLGR+G L+EAE+ I SM       ++K LLSAC++H
Sbjct: 314 FKLMVEKYGLK-PRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIH 372

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++A R+A+ +L L P D A YVLLSN+  +   W D   +RT M +R ++K+PG SW
Sbjct: 373 RNADMATRTAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSW 432

Query: 306 V 306
           +
Sbjct: 433 L 433



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 13/241 (5%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  RN  +WNA+++G       E  L  F EM + G   D FT+ S++     +  
Sbjct: 45  VFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRA 104

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              GKQ+HA + K GY+ N+ V + L  MY   G++ +  KV  +M  R++V+WN+L+ G
Sbjct: 105 SYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAG 164

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G+    + L+  M+ + ++PD  T + V+S+      + +G Q           E 
Sbjct: 165 NAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQI--------HAEA 216

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMS-----RNPGPSVYKALLSACQVHGNREIAV 252
            +A   +A+  L       ++     +SM       +P   ++ ++++A   HG  E AV
Sbjct: 217 IKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAV 276

Query: 253 R 253
            
Sbjct: 277 H 277



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 6/172 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    D           + + W+++IA +   G GE+A+  F +M Q G+  + 
Sbjct: 232 ISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGND 291

Query: 63  FTITSIVGAIGVISGFKEGKQ--MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
            T  S++ A    +G KE        ++ K G    +     +V +    G +++A  + 
Sbjct: 292 VTFLSLLYACSH-NGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMI 350

Query: 121 SSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            SM  E D+V W +LL  C  H  +  A +  E++ +  + P  +   V+LS
Sbjct: 351 RSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILR--LNPQDSATYVLLS 400



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 13/155 (8%)

Query: 78  FKEGKQMHALIFKIGYD-SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
           FK G+   A+ F       N+   N L+  +   G ++ A KVF  M ER++ +WN+++ 
Sbjct: 3   FKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVS 62

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G     ++   + LF +M +    PD  T   VL  C        GL+  Y  +   +  
Sbjct: 63  GLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCA-------GLRASYAGKQVHAYV 115

Query: 197 PPRAEHYTAIVG-----LLGRAGFLNEAESFINSM 226
                 +  +VG     +  ++G L E E  I +M
Sbjct: 116 LKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAM 150


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 181/301 (60%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D ++++  +  RN +SW+ +I G+  L  G +AL  F +     +D++ FT 
Sbjct: 171 YAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTF 230

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++      +  + GK +H L  K+ +DS+ FV + L+ +Y+ CG I  A +VF  +  
Sbjct: 231 SSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPT 290

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+L  WNS+L+ CA H +++    LFE+M    +KP+   FL VL AC HAG ++KG +Y
Sbjct: 291 RNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREY 350

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LMR D  +E P  EHY ++V LLGRAG L EA S I  M   P  SV+ ALL+ C++H
Sbjct: 351 FSLMR-DYGIE-PETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIH 408

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + E+A   A R+L++  +   ++VLLSN   A   +++A  +R ++ +RG++K+ G SW
Sbjct: 409 KDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSW 468

Query: 306 V 306
           V
Sbjct: 469 V 469



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 118/248 (47%), Gaps = 11/248 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+    L    V+     ++  +W+++I+ F    +   AL+ F  M   G+  D    
Sbjct: 70  YSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIY 129

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S   A G +     GK +H L  K GY  +VFV + LV MYA CG I DA  +F  M E
Sbjct: 130 PSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPE 189

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++VSW+ ++ G A      EA+ LF+Q    ++  +  TF  V+  C  + F++ G   
Sbjct: 190 RNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLI 249

Query: 186 FYL---MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM-SRNPGPSVYKALLSA 241
             L   M  D+S     +   +A++ L  + G +  A    + + +RN G  ++ ++L A
Sbjct: 250 HGLCLKMSFDSS-----SFVGSALISLYSKCGVIEGAYQVFDEIPTRNLG--LWNSMLIA 302

Query: 242 CQVHGNRE 249
           C  H + +
Sbjct: 303 CAQHAHTQ 310



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 1/167 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C        V+  + TRN   WN+++         ++    F EM   G+  ++
Sbjct: 269 ISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNF 328

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
               S++ A       ++G++  +L+   G +        LV +    G + +A  V   
Sbjct: 329 IXFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQ 388

Query: 123 MDERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
           M  R   S W +LL GC  H  +  A  + +++ + +    G   L+
Sbjct: 389 MPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLL 435



 Score = 45.1 bits (105), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 3/129 (2%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           + Q   + +Y  I +++ +       ++G Q+HA I K G  +   V + L+ +Y+    
Sbjct: 16  LNQNSFEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQL 75

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
              + +VF    ++   +W+S++   A +     A+Q F +M    ++PD   +     A
Sbjct: 76  PLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKA 135

Query: 173 CCHAGFIDK 181
           C   GF+ +
Sbjct: 136 C---GFLRR 141


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 178/302 (58%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C    +   +++    +N+++WN II G+  LG GE+AL  FS M    I     T
Sbjct: 351 VYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVT 410

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +S++ A   +   + G+Q+H+L  K  Y+ +  V N L+ MYA CG I+DA   F  MD
Sbjct: 411 YSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMD 470

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++D VSWN+L+ G + HG   EA+ LF+ MQ++  KP+  TF+ VLSAC +AG +DKG  
Sbjct: 471 KQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRA 530

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +F  M  D  +EP   EHYT +V LLGR+G  +EA   I  +   P   V++ALL AC +
Sbjct: 531 HFKSMLQDYGIEPC-IEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVI 589

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N ++    A+RVL++ P D A +VLLSN+      WD+   +R  M  + ++K+PG S
Sbjct: 590 HKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLS 649

Query: 305 WV 306
           WV
Sbjct: 650 WV 651



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 123/246 (50%), Gaps = 12/246 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFT 64
           Y++     + Q  +  +   + I W+ +I+ +      ++AL+ F  MRQ+ + + + FT
Sbjct: 250 YTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFT 309

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++ A   +     G Q+H+ + K+G DSNVFV N L+ +YA CG I ++ K+F+   
Sbjct: 310 FASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGST 369

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E++ V+WN++++G    G   +A+ LF  M   +I+P   T+  VL A      ++ G Q
Sbjct: 370 EKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQ 429

Query: 185 YFYL----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
              L    M N  S+         +++ +  + G +++A    + M +    S + AL+ 
Sbjct: 430 IHSLTIKTMYNKDSVVA------NSLIDMYAKCGRIDDARLTFDKMDKQDEVS-WNALIC 482

Query: 241 ACQVHG 246
              +HG
Sbjct: 483 GYSIHG 488



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 1/183 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS C +    + V+  +  ++ +SW  ++A +      E +L  F +MR  G   + 
Sbjct: 146 IDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNN 205

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FTI++ + +   +  FK GK +H    K+ YD +++V   L+ +Y   G I +A + F  
Sbjct: 206 FTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEE 265

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDK 181
           M + DL+ W+ ++   A    S+EA++LF +M Q + + P+  TF  VL AC     ++ 
Sbjct: 266 MPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNL 325

Query: 182 GLQ 184
           G Q
Sbjct: 326 GNQ 328



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 105/221 (47%), Gaps = 12/221 (5%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   ++  +   N +S+  +  GF      ++A +    + + G +++ F  T+++  + 
Sbjct: 56  DASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLV 115

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +        +HA ++K+G+ ++ FV   L+  Y++CG ++ A +VF  +  +D+VSW  
Sbjct: 116 SMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTG 175

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR--N 191
           ++   A +    +++ LF QM+    +P+  T    L +C        GL+ F + +  +
Sbjct: 176 MVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSC-------NGLEAFKVGKSVH 228

Query: 192 DASLEPPRAEHY---TAIVGLLGRAGFLNEAESFINSMSRN 229
             +L+           A++ L  ++G + EA+ F   M ++
Sbjct: 229 GCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKD 269



 Score = 37.4 bits (85), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           GK +H  I K G   ++F QN L+  Y   G + DA+K+F  M   + VS+ +L  G
Sbjct: 22  GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQG 78


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 176/291 (60%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++ ++ +  +N +SW  +I+G   +G  E+ALK F+ M+  G +   +     + +  V+
Sbjct: 379 KSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVL 438

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              K G+Q+HA + + GY+S++   N L+ MYA CG ++ A+ +F +M   D +SWN+++
Sbjct: 439 GSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMI 498

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
                HG   +A++LFE+M K  I PD  +FL V+SAC HAG + +G +YF  M N   +
Sbjct: 499 AALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGV 558

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
            P   EHY  I+ LL RAG  +EA+  + SM   PG  +++ALL+ C++HGN ++ + +A
Sbjct: 559 NPDE-EHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAA 617

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +R+ +L P     YVLLSN+      W+D   +R LM +RG++K+PG SW+
Sbjct: 618 ERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWI 668



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 8/167 (4%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           ++WNA+I+G+ + G   +A + F +M  + I +D FT TS++        F+ GK+MHA 
Sbjct: 255 VAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAY 314

Query: 88  IFKI----GYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
             K       D  + V N L+  Y  CG ++ A ++F+ M ERDLVSWN +L G  +   
Sbjct: 315 FLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRC 374

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
             EA   F +M +  I     ++++++S     GF ++ L++F  M+
Sbjct: 375 MDEAKSFFNEMPEKNI----LSWIIMISGLAQIGFAEEALKFFNRMK 417



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 109/245 (44%), Gaps = 43/245 (17%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS-GFKEGKQ 83
           R+ + +NA+I  + +   G  A++ F +M++     D +T TS++GA+ +++   K  +Q
Sbjct: 110 RDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQ 169

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGA---------INDANKVFSSMDERDL------ 128
           +H  + K G      V N L+  Y  C A         + +A K+F  M  RD       
Sbjct: 170 LHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTI 229

Query: 129 -------------------------VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG 163
                                    V+WN+++ G AH G   EA ++F +M  ++I+ D 
Sbjct: 230 ITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDE 289

Query: 164 TTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHY-TAIVGLLGRAGFLNEAES 221
            TF  V+S C +AG    G + + Y ++  A+  P  A     A++    + G ++ A+ 
Sbjct: 290 FTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQE 349

Query: 222 FINSM 226
             N M
Sbjct: 350 IFNKM 354



 Score = 44.3 bits (103), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSS--MDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           ++  +  L+  Y+  G +  + K+FS   +  RD V +N+++   +H+     A++LF  
Sbjct: 78  DIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCD 137

Query: 154 MQKTEIKPDGTTFLVVLSA 172
           MQ+   +PD  TF  VL A
Sbjct: 138 MQRDNFRPDNYTFTSVLGA 156


>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
          Length = 697

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/300 (39%), Positives = 182/300 (60%), Gaps = 3/300 (1%)

Query: 6   YSRCDSSLDFQNV-YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS C + LD  +V +  +R R+ ISW+ II G+     GE+  K FS MRQAG     F 
Sbjct: 344 YSTC-AKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPTDFA 402

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + S++   G+++  ++G+Q+HAL   +G + N  +++ L+ MY+ CG+I +A+KVF   D
Sbjct: 403 LASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIEASKVFEEKD 462

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             D+VS  +++ G A HG   EA+ LFE+  K   +PD  TF+ VL+AC H+G +D G Q
Sbjct: 463 RTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISVLTACSHSGQLDLGFQ 522

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF LM+ + ++ P + EHY  +V LL RAG LN+AE  IN M       V+  LL AC+ 
Sbjct: 523 YFNLMQENYNMRPAK-EHYGCMVDLLCRAGRLNDAEKMINEMPWKKDDVVWTTLLRACKE 581

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
            G+ E   R+A+R+L+L P      V L+N+  +T  W +A ++R  M ++G+ K+PG+S
Sbjct: 582 KGDVERGRRAAQRILELDPTSFTTLVTLANIHSSTGNWKEAANVRKDMKSKGVIKEPGWS 641



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 125/275 (45%), Gaps = 5/275 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C    D   ++ S+  R+ + W ++I  +  +G  E+A+  F  MR + +  +  T 
Sbjct: 243 YTECGEMQDGLRLFESMSERDVVLWTSLITAYIRIGQEEKAVNTFLLMRNSQVSPNEQTF 302

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S   A   +S    G+Q+H  +F +G   ++ V N ++ MY+ C  ++ A+ +F  M  
Sbjct: 303 ASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMKMYSTCAKLDSASVLFQGMRC 362

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD++SW++++ G +   +  E  + F  M++   +P       +LS       +++G Q 
Sbjct: 363 RDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPTDFALASLLSVSGIMAVLEQGRQV 422

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             L       + P     +A++ +  + G + EA        R    S+  A+++    H
Sbjct: 423 HALALYLGLEQNPTIR--SALINMYSKCGSIIEASKVFEEKDRTDIVSL-TAMINGYAEH 479

Query: 246 GNREIAVRSAKRVLDL--WPNDPAIYVLLSNVSKA 278
           G  E A+   ++ L L   P+D     +L+  S +
Sbjct: 480 GKCEEAIDLFEKSLKLSFRPDDVTFISVLTACSHS 514



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 1/157 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVIS 76
           V++ +  RN ++W A I G  + G   + L+ FS+M R   +  D F     + A   + 
Sbjct: 153 VFAEMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLR 212

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             K G+++H  +   G+ + ++V N L  MY  CG + D  ++F SM ERD+V W SL+ 
Sbjct: 213 QVKYGREIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLIT 272

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
                G   +AV  F  M+ +++ P+  TF    +AC
Sbjct: 273 AYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAAC 309



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR--QAGIDIDYFTITSIVGAIG 73
           + V+  +  R+  SW AI+ G+      E+AL  FS MR    G+  D + ++  + A G
Sbjct: 48  RQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSGDTYVLSVALKACG 107

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
             S    G+ +HA   K    S+VFV + L+ MY   G I+ + +VF+ M  R+ V+W +
Sbjct: 108 QSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPFRNSVTWTA 167

Query: 134 LLLGCAHHGYSREAVQLFEQMQK-TEIKPDGTTFLVVLSAC 173
            + G  H G   E ++ F QM +  ++  D   F + L AC
Sbjct: 168 FITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKAC 208



 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL--V 168
           G +  A +VF  M  RD+ SW +++ G        EA+ LF  M+   +   G T++  V
Sbjct: 42  GKLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSGDTYVLSV 101

Query: 169 VLSACCHAGFIDKG 182
            L AC  +  I  G
Sbjct: 102 ALKACGQSSNIAYG 115


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 182/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C        ++  +  ++ I+WNA++A   + G GE+ALK F EMR  G+++D 
Sbjct: 643 ITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQ 702

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F+ +  + A   ++  +EG+Q+H L+ K+G++S++ V N  + MY  CG ++D  K+   
Sbjct: 703 FSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQ 762

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              R  +SWN L+   A HG  ++A + F +M K   KPD  TF+ +LSAC H G +D+G
Sbjct: 763 PINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEG 822

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L Y+  M  +  + P   EH   I+ LLGR+G L+ AE FI  M   P    +++LL+AC
Sbjct: 823 LAYYDSMTREFGVFPG-IEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAAC 881

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN E+A ++A+ +L+L P+D + YVL SNV   +  W+D  ++R  M +  I+K+P 
Sbjct: 882 RIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPA 941

Query: 303 YSWV 306
            SWV
Sbjct: 942 CSWV 945



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 135/273 (49%), Gaps = 7/273 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +    ++ + V  ++   ++++WNA+I G        +A+K +  +R+ GI  +Y
Sbjct: 541 VTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANY 600

Query: 63  FTITSIVGAIGVISGF-KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T+ S++GA        K G  +HA I   G++S+ +V+N L+ MYA CG +N +N +F 
Sbjct: 601 ITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFD 660

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            +  +  ++WN+++   AHHG   EA+++F +M+   +  D  +F   L+A  +   +++
Sbjct: 661 GLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEE 720

Query: 182 GLQYFYLMRNDASLEPPRAEHYT-AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           G Q   L+     L      H T A + + G+ G +++    +     N     +  L+S
Sbjct: 721 GQQLHGLV---IKLGFESDLHVTNAAMDMYGKCGEMHDVLKML-PQPINRSRLSWNILIS 776

Query: 241 ACQVHGNREIAVRSAKRVLDLWPN-DPAIYVLL 272
           A   HG  + A  +   +L L P  D   +V L
Sbjct: 777 AFARHGCFQKARETFHEMLKLGPKPDHVTFVSL 809



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 132/278 (47%), Gaps = 27/278 (9%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +   + ISWNA+I+ + + G   ++L+CF  MR    + +  T++S++     +  
Sbjct: 354 VFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDN 413

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K G+ +H L+ K+G DSNV + N L+ +Y+  G   DA  VF +M ERDL+SWNS++  
Sbjct: 414 LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMAC 473

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----------CHAGFIDKGLQYF 186
               G   + +++  ++ +     +  TF   L+AC            HA  I  G   F
Sbjct: 474 YVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDF 533

Query: 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
            ++ N             A+V + G+ G + EA+  + +M + P    + AL+     + 
Sbjct: 534 LIVGN-------------ALVTMYGKLGMMMEAKKVLQTMPQ-PDRVTWNALIGGHAENE 579

Query: 247 NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDD 284
               AV++ K + +     PA Y+ + +V  A    DD
Sbjct: 580 EPNEAVKAYKLIRE--KGIPANYITMVSVLGACSAPDD 615



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 122/250 (48%), Gaps = 6/250 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS    S D + V+ ++  R+ ISWN+++A +   G     LK  +E+ Q G  +++ T 
Sbjct: 443 YSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTF 502

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + A        E K +HALI   G+   + V N LV MY   G + +A KV  +M +
Sbjct: 503 ASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQ 562

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D V+WN+L+ G A +    EAV+ ++ +++  I  +  T + VL AC      D  L++
Sbjct: 563 PDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAP---DDLLKH 619

Query: 186 FYLMRNDASLEPPRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
              +     L    ++ Y   +++ +  + G LN +    + +  N  P  + A+++A  
Sbjct: 620 GMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLG-NKSPITWNAMVAANA 678

Query: 244 VHGNREIAVR 253
            HG  E A++
Sbjct: 679 HHGCGEEALK 688



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 90/158 (56%), Gaps = 3/158 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +R RN+ SW+ +++G+  +G  E+A+  F +M   G++ + F + S++ A    SG
Sbjct: 151 VFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSR-SG 209

Query: 78  F--KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +   EG Q+H  + K G   +V+V   LV  Y   G + +A K+F  M + ++VSW SL+
Sbjct: 210 YMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLM 269

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +G +  G   E + ++++M++  +  +  TF  V S+C
Sbjct: 270 VGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC 307



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 83/150 (55%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++  +   N +SW +++ G+ + G+  + L  +  MRQ G+  +  T  ++  + G++
Sbjct: 251 QKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLL 310

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G Q+   I + G++ +V V N L+ M++   ++ +A  VF  M+E D++SWN+++
Sbjct: 311 EDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMI 370

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
              AHHG  RE+++ F  M+    + + TT
Sbjct: 371 SAYAHHGLCRESLRCFHWMRHLHNETNSTT 400



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 9/159 (5%)

Query: 75  ISGFKE------GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           + GF E      GK +HA       +  +F  N L+ MY+  G I  A  VF  M  R+ 
Sbjct: 101 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 160

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI-DKGLQYFY 187
            SW+++L G    G   EAV LF QM    ++P+G     +++AC  +G++ D+G Q   
Sbjct: 161 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHG 220

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
            +     L        TA+V   G  G +  A+     M
Sbjct: 221 FVVKTGILGDVYVG--TALVHFYGSIGLVYNAQKLFEEM 257


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/295 (37%), Positives = 177/295 (60%), Gaps = 7/295 (2%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++ +  RN +SWNA+IAG+   G  E+AL  F  +++  +   +++  +I+ A   ++ 
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAE 401

Query: 78  FKEGKQMHALIFKIGY------DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
              G Q H  + K G+      + ++FV N L+ MY  CG + +   VF  M ERD VSW
Sbjct: 402 LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSW 461

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
           N++++G A +GY  EA++LF +M ++  KPD  T + VLSAC HAGF+++G  YF  M  
Sbjct: 462 NAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTR 521

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
           D  + P R +HYT +V LLGRAGFL EA+S I  M   P   ++ +LL+AC+VH N  + 
Sbjct: 522 DFGVAPLR-DHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLG 580

Query: 252 VRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
              A+++L++ P++   YVLLSN+      W+D  ++R  M   G+ K+PG SW+
Sbjct: 581 KYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWI 635



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 118/216 (54%), Gaps = 13/216 (6%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +++ S+  R+Q +WN++++GF      E+AL  F+ M + G  ++ ++  S++ A   ++
Sbjct: 107 SLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLN 166

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
              +G Q+H+LI K  + S+V++ + LV MY+ CG +NDA +VF  M +R++VSWNSL+ 
Sbjct: 167 DMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLIT 226

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF------YLMR 190
               +G + EA+ +F+ M ++ ++PD  T   V+SAC     I  G +          +R
Sbjct: 227 CFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLR 286

Query: 191 NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           ND  L         A V +  +   + EA    +SM
Sbjct: 287 NDIILS-------NAFVDMYAKCSRIKEARFIFDSM 315



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 32/211 (15%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C +  D Q V+  +  RN +SWN++I  F   G   +AL  F  M ++ ++ D  T+
Sbjct: 197 YSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTL 256

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSSMD 124
            S++ A   +S  K G+++H  + K     N + + N  V MYA C  I +A  +F SM 
Sbjct: 257 ASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316

Query: 125 -------------------------------ERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                                          ER++VSWN+L+ G   +G + EA+ LF  
Sbjct: 317 IRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCL 376

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++  + P   +F  +L AC     +  G+Q
Sbjct: 377 LKRESVCPTHYSFANILKACADLAELHLGMQ 407



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 37/178 (20%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND-------------------------- 115
           + +HA + K G+ + +F+QNRL+  Y+ CG++ D                          
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 116 -----ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
                A+ +F SM ERD  +WNS++ G A H    EA+  F  M K     +  +F  VL
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 171 SACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSM 226
           SAC     ++KG+Q   L+       P  ++ Y  +A+V +  + G +N+A+   + M
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKS----PFLSDVYIGSALVDMYSKCGNVNDAQRVFDEM 213


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 177/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + V++ + + + ++W  +I+G    G  EQAL  + +MR AG+  D +T 
Sbjct: 545 YLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTF 604

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            ++V A  +++  ++GKQ+HA I K+    + FV   LV MYA CG I DA  +F  M+ 
Sbjct: 605 ATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNT 664

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R +  WN++++G A HG + EA+  F +M+   + PD  TF+ VLSAC H+G      + 
Sbjct: 665 RSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKN 724

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+    +E P  EHY+ +V  L RAG + EAE  ++SM      ++Y+ LL+AC+V 
Sbjct: 725 FDSMQKTYGVE-PEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQ 783

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G++E   R A+++  + P+D A YVLLSN+  A + W++A   R +M    ++K+PG+SW
Sbjct: 784 GDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSW 843

Query: 306 V 306
           +
Sbjct: 844 I 844



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 29  SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
           SWNA++ GF    +  +AL+ FS M + G   D  T  +   A G +   ++GKQ+HA++
Sbjct: 467 SWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVV 526

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
            K+ +  ++FV + ++ MY  CG +  A KVF+ +   D V+W +++ GC  +G   +A+
Sbjct: 527 IKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQAL 586

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIV 207
             + QM+   ++PD  TF  ++ AC     +++G Q +  +M+ + + +P      T++V
Sbjct: 587 FTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFV---MTSLV 643

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            +  + G + +A      M+     +++ A++     HGN E A+
Sbjct: 644 DMYAKCGNIEDAYGLFRRMN-TRSVALWNAMIVGLAQHGNAEEAL 687



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 80/144 (55%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN  ++ +   G G +A+ CF +M ++ +  D  T   I+  +  ++  + GKQ+H  + 
Sbjct: 265 WNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVV 324

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
           + G+D  V V N  + MY   G++N A ++F  M E DL+SWN+++ GCA  G    +++
Sbjct: 325 RFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLR 384

Query: 150 LFEQMQKTEIKPDGTTFLVVLSAC 173
           LF  + ++ + PD  T   VL AC
Sbjct: 385 LFIDLLRSGLLPDQFTITSVLRAC 408



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 14/243 (5%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  ++  + ISWN +I+G    G  E +L+ F ++ ++G+  D FTITS++ A   +
Sbjct: 352 RRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSL 411

Query: 76  -SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
              +  G+Q+H    K G   + FV   L+ +Y+  G + +A  +F + D  DL SWN++
Sbjct: 412 EESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAM 471

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + G       REA++LF  M +   K D  TF     A      + +G Q   ++     
Sbjct: 472 MHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVV----- 526

Query: 195 LEPPRAEHY-----TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNRE 249
                  HY     + I+ +  + G +  A    N +  +P    +  ++S C  +G  E
Sbjct: 527 --IKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGCVENGEEE 583

Query: 250 IAV 252
            A+
Sbjct: 584 QAL 586



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 8/190 (4%)

Query: 3   ILTYSRCDSSLDFQNVY--SSVRTRNQISWNAIIAGFCNLGS------GEQALKCFSEMR 54
           I  Y++C S    + ++  +    R+ +++NAI+A + + G         +A   F  +R
Sbjct: 55  ITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLR 114

Query: 55  QAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN 114
           Q+ +     T++ +     +       + +     KIG   +VFV   LV +YA    I 
Sbjct: 115 QSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIR 174

Query: 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
           +A  +F  M  RD+V WN ++      G   E + LF    ++ ++PD  +   +L    
Sbjct: 175 EARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVG 234

Query: 175 HAGFIDKGLQ 184
                ++ L+
Sbjct: 235 KKTVFERELE 244



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 29/168 (17%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ + WN ++  +  +G+G++ L  FS   ++G+  D  ++ +I+  +G  + 
Sbjct: 179 LFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTV 238

Query: 78  F-KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
           F +E +Q+ A                             A K+F   D+ D+  WN  L 
Sbjct: 239 FERELEQVRAY----------------------------ATKLFVCDDDSDVTVWNKTLS 270

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
                G   EAV  F  M K+ +  D  T++V+LS       ++ G Q
Sbjct: 271 SYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQ 318



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 8/101 (7%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF--SSMDERDLVSWNSLLLGC 138
           GK+ HA+I   G + + +V N L+ MYA CG++  A K+F  +   +RDLV++N++L   
Sbjct: 32  GKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAY 91

Query: 139 AHHG------YSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           AH G       + EA  +F  ++++ +     T   +   C
Sbjct: 92  AHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLC 132


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 182/304 (59%), Gaps = 1/304 (0%)

Query: 3    ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
            I  Y++C        ++  +  ++ I+WNA++A   + G GE+ALK F EMR  G+++D 
Sbjct: 1293 ITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQ 1352

Query: 63   FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            F+ +  + A   ++  +EG+Q+H L+ K+G++S++ V N  + MY  CG ++D  K+   
Sbjct: 1353 FSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQ 1412

Query: 123  MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
               R  +SWN L+   A HG  ++A + F +M K   KPD  TF+ +LSAC H G +D+G
Sbjct: 1413 PINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEG 1472

Query: 183  LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            L Y+  M  +  + P   EH   I+ LLGR+G L+ AE FI  M   P    +++LL+AC
Sbjct: 1473 LAYYDSMTREFGVFPG-IEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAAC 1531

Query: 243  QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            ++HGN E+A ++A+ +L+L P+D + YVL SNV   +  W+D  ++R  M +  I+K+P 
Sbjct: 1532 RIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPA 1591

Query: 303  YSWV 306
             SWV
Sbjct: 1592 CSWV 1595



 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 162/306 (52%), Gaps = 2/306 (0%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLG-SGEQALKCFSEMRQAGID 59
           L I  Y++  S    +++   +  ++  S  A+I G+ + G     AL  F EM Q  I 
Sbjct: 272 LLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIG 331

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           +D   + S++     ++ F  G Q+HA   K     +V + N L+ MYA  G I DA + 
Sbjct: 332 MDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRA 391

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M+E++++SW SL+ G A HGY   AV L+++M+    KP+  TFL +L AC H G  
Sbjct: 392 FDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLT 451

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
            +G + F  M N  +++ PRAEHY+ +V L  R G L EA + +  +      S++ A+L
Sbjct: 452 AEGCECFNNMVNKYNIK-PRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAIL 510

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
            A  ++G   +   +A  + ++ P +   YV+L+++  A   WDDA  IR LM  R  +K
Sbjct: 511 GASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKK 570

Query: 300 KPGYSW 305
             GYS+
Sbjct: 571 NAGYSF 576



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 135/273 (49%), Gaps = 7/273 (2%)

Query: 3    ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
            +  Y +    ++ + V  ++   ++++WNA+I G        +A+K +  +R+ GI  +Y
Sbjct: 1191 VTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANY 1250

Query: 63   FTITSIVGAIGVISGF-KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             T+ S++GA        K G  +HA I   G++S+ +V+N L+ MYA CG +N +N +F 
Sbjct: 1251 ITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFD 1310

Query: 122  SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
             +  +  ++WN+++   AHHG   EA+++F +M+   +  D  +F   L+A  +   +++
Sbjct: 1311 GLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEE 1370

Query: 182  GLQYFYLMRNDASLEPPRAEHYT-AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
            G Q   L+     L      H T A + + G+ G +++    +     N     +  L+S
Sbjct: 1371 GQQLHGLV---IKLGFESDLHVTNAAMDMYGKCGEMHDVLKML-PQPINRSRLSWNILIS 1426

Query: 241  ACQVHGNREIAVRSAKRVLDLWPN-DPAIYVLL 272
            A   HG  + A  +   +L L P  D   +V L
Sbjct: 1427 AFARHGCFQKARETFHEMLKLGPKPDHVTFVSL 1459



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 132/278 (47%), Gaps = 27/278 (9%)

Query: 18   VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
            V+  +   + ISWNA+I+ + + G   ++L+CF  MR    + +  T++S++     +  
Sbjct: 1004 VFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDN 1063

Query: 78   FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             K G+ +H L+ K+G DSNV + N L+ +Y+  G   DA  VF +M ERDL+SWNS++  
Sbjct: 1064 LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMAC 1123

Query: 138  CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----------CHAGFIDKGLQYF 186
                G   + +++  ++ +     +  TF   L+AC            HA  I  G   F
Sbjct: 1124 YVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDF 1183

Query: 187  YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
             ++ N             A+V + G+ G + EA+  + +M + P    + AL+     + 
Sbjct: 1184 LIVGN-------------ALVTMYGKLGMMMEAKKVLQTMPQ-PDRVTWNALIGGHAENE 1229

Query: 247  NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDD 284
                AV++ K + +     PA Y+ + +V  A    DD
Sbjct: 1230 EPNEAVKAYKLIRE--KGIPANYITMVSVLGACSAPDD 1265



 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 95/175 (54%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y +    +  +NV+  +  R+ +SW A+++G+   G  E+A   FS+MR  G+  + 
Sbjct: 72  IIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQ 131

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S + A   +     G Q+   I K  +  N+FV++ LV  ++ CG + DA+ +F +
Sbjct: 132 FTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGT 191

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           M ERD+VSWN+++ G A  G++ ++  +F  M +  + PD  T   VL A    G
Sbjct: 192 MMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGG 246



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 122/250 (48%), Gaps = 6/250 (2%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            YS    S D + V+ ++  R+ ISWN+++A +   G     LK  +E+ Q G  +++ T 
Sbjct: 1093 YSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTF 1152

Query: 66   TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             S + A        E K +HALI   G+   + V N LV MY   G + +A KV  +M +
Sbjct: 1153 ASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQ 1212

Query: 126  RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
             D V+WN+L+ G A +    EAV+ ++ +++  I  +  T + VL AC      D  L++
Sbjct: 1213 PDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAP---DDLLKH 1269

Query: 186  FYLMRNDASLEPPRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
               +     L    ++ Y   +++ +  + G LN +    + +  N  P  + A+++A  
Sbjct: 1270 GMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLG-NKSPITWNAMVAANA 1328

Query: 244  VHGNREIAVR 253
             HG  E A++
Sbjct: 1329 HHGCGEEALK 1338



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 128/271 (47%), Gaps = 8/271 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           +S+C    D   ++ ++  R+ +SWNA+I G+   G  + +   F  M + G+  D +T+
Sbjct: 176 HSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTL 235

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A     G     Q+H +I ++GY S   V   L+  YA  G++  A  +   M +
Sbjct: 236 GSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLK 295

Query: 126 RDLVSWNSLLLGCAHHG-YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +DL S  +L+ G AH G YS +A+ LF++M +  I  D      +L+ C +      G Q
Sbjct: 296 KDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQ 355

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            + + ++   S +        A++ +  ++G + +A+   + M      S + +L+S   
Sbjct: 356 IHAFALKYQPSYDVAMG---NALIDMYAKSGEIEDAKRAFDEMEEKNVIS-WTSLISGYA 411

Query: 244 VHGNREIAVRSAKRVLD--LWPNDPAIYVLL 272
            HG   +AV   K++      PND     LL
Sbjct: 412 KHGYGHMAVSLYKKMESKGFKPNDVTFLSLL 442



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 90/158 (56%), Gaps = 3/158 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +R RN+ SW+ +++G+  +G  E+A+  F +M   G++ + F + S++ A    SG
Sbjct: 801 VFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSR-SG 859

Query: 78  F--KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +   EG Q+H  + K G   +V+V   LV  Y   G + +A K+F  M + ++VSW SL+
Sbjct: 860 YMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLM 919

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +G +  G   E + ++++M++  +  +  TF  V S+C
Sbjct: 920 VGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC 957



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 83/150 (55%)

Query: 16   QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
            Q ++  +   N +SW +++ G+ + G+  + L  +  MRQ G+  +  T  ++  + G++
Sbjct: 901  QKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLL 960

Query: 76   SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                 G Q+   I + G++ +V V N L+ M++   ++ +A  VF  M+E D++SWN+++
Sbjct: 961  EDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMI 1020

Query: 136  LGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
               AHHG  RE+++ F  M+    + + TT
Sbjct: 1021 SAYAHHGLCRESLRCFHWMRHLHNETNSTT 1050



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 9/159 (5%)

Query: 75  ISGFKE------GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           + GF E      GK +HA       +  +F  N L+ MY+  G I  A  VF  M  R+ 
Sbjct: 751 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 810

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI-DKGLQYFY 187
            SW+++L G    G   EAV LF QM    ++P+G     +++AC  +G++ D+G Q   
Sbjct: 811 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHG 870

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
            +     L        TA+V   G  G +  A+     M
Sbjct: 871 FVVKTGILGDVYVG--TALVHFYGSIGLVYNAQKLFEEM 907



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 3/151 (1%)

Query: 34  IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY 93
           I   CNLG   +ALK  S        +D      I+         K+G  +H  +   G+
Sbjct: 5   IQSACNLGRLAEALKLLS---SNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGF 61

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
            S++ +  +L+  Y   G +  A  VF  M ER +VSW +++ G + +G   +A  LF  
Sbjct: 62  GSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSD 121

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           M+   +K +  T+   L AC     +D G+Q
Sbjct: 122 MRHCGVKANQFTYGSALRACTSLRCLDMGIQ 152


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C  +     ++  +  RN ++WN++I G+   G   +AL  F EM   G++ D FT+
Sbjct: 185 YAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTM 244

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +     G++ H  + K+G D N+   N L+ +YA CG+I  A+KVF  M+E
Sbjct: 245 VSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEE 304

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           + +VSW SL++G A +G+ +EA++LF+++++  + P   TF+ VL AC H G +D+G  Y
Sbjct: 305 KSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDY 364

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+ +  +  P+ EHY  +V LLGRAG + +A  FI +M   P   V++ LL AC +H
Sbjct: 365 FKRMKEEYGI-VPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIH 423

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+  +   +  ++L L P     YVLLSN+  +   W D   +R  M   G++K PG+S 
Sbjct: 424 GHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSL 483

Query: 306 V 306
           V
Sbjct: 484 V 484



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 119/217 (54%), Gaps = 8/217 (3%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
             ++S ++  N  +WN +I G+    +   AL+ + +M  + I+ D  T   ++ AI  +
Sbjct: 94  HQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKL 153

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              +EG+++H++  + G++S VFVQN LV MYA CG    A+K+F  M ER+LV+WNS++
Sbjct: 154 MDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVI 213

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN--D 192
            G A +G   EA+ LF +M    ++PDG T + +LSAC   G +  G + + Y+++   D
Sbjct: 214 NGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLD 273

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
            +L         A++ L  + G + +A    + M   
Sbjct: 274 GNLHAG-----NALLDLYAKCGSIRQAHKVFDEMEEK 305



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 82  KQMHALIFKIGYD-SNVFVQNRLVF-MYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           +Q+HA   + G   +N  +   L+F + + C  ++ A+++FS +   ++ +WN+++ G A
Sbjct: 57  RQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYA 116

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
                  A++L+ QM  + I+PD  T+  +L A
Sbjct: 117 ESENPMPALELYRQMHVSCIEPDTHTYPFLLKA 149


>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 179/303 (59%), Gaps = 3/303 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFT 64
           Y++     +   ++  +  +N  SW A+I+GF   G G +A   F+EMR+  +DI D   
Sbjct: 118 YAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLV 177

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++SIVGA   ++    G+Q+H L+  +G+DS VF+ N L+ MYA C  +  A  +FS M 
Sbjct: 178 LSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMR 237

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD+VSW SL++G A HG + +A+ L+++M    +KP+  TF+ ++ AC H GF+ KG +
Sbjct: 238 HRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVTFVGLIYACSHVGFVAKGRE 297

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M  D  +  P  +HYT ++ LLGR+G L+EAE+ I++M   P    + ALLSAC+ 
Sbjct: 298 LFQSMTKDYGIR-PSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKR 356

Query: 245 HGNREIAVRSAKRVLDLW-PNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
            G  ++ VR A  ++  + P DP+ Y+LLSN+  +   W    + R  + +  +RK PGY
Sbjct: 357 QGQGQMGVRIADHLVSSFKPKDPSTYILLSNIYASASLWGKVSEARRKLGDMEVRKDPGY 416

Query: 304 SWV 306
           S V
Sbjct: 417 SSV 419



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 10/164 (6%)

Query: 25  RNQISWNAIIAGF--CNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGK 82
           R+ I+W +++      NL SG+      S    +G+  D F  +++V A   +   K GK
Sbjct: 4   RDHIAWASVLTALNQANL-SGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKLGK 62

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           Q+H       Y ++  V++ LV MYA C  ++ A  VF S+  ++ +SW +++ G A  G
Sbjct: 63  QVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAKSG 122

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
              EA++LF ++    +     ++  ++S    +G   KGL+ F
Sbjct: 123 RKEEALELFRRLPVKNL----YSWTALISGFVQSG---KGLEAF 159


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 183/305 (60%), Gaps = 3/305 (0%)

Query: 3   ILTYSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I  Y+ C + +D+   V+ S    + + WN+++AG+   GS E+AL  F  M QAG+   
Sbjct: 529 IDMYANC-TQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPV 587

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             T +S++ A G +S  + GKQ+HA + +  ++ N+F+ + L+ MY  CG ++ A +VF+
Sbjct: 588 PVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFN 647

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            +   D+VSW ++++G A HG + EA  LFE+M+   +KP+  TFL VL+AC HAG +D 
Sbjct: 648 GIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDN 707

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G +YF  M N      P  EH  A+   LGRAG L+EA +FI+ M   P  SV+  LL A
Sbjct: 708 GWKYFNSMSNQYGFV-PSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRA 766

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+VH N  +A   AK++ +L P     +V+LSN+  A+  W++A  +R  M  +G++K+P
Sbjct: 767 CRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEP 826

Query: 302 GYSWV 306
             SW+
Sbjct: 827 ACSWI 831



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 1/177 (0%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
            + V+  +  R+ +SWN +I G       ++AL    EM + G   D FT+++++     
Sbjct: 440 MRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAE 499

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
            +  K G  +H    K G+D++VFV + L+ MYA C  ++ + KVF S  + D V WNS+
Sbjct: 500 CADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSM 559

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMR 190
           L G A +G   EA+ +F +M +  ++P   TF  ++ A  +   +  G Q + YL+R
Sbjct: 560 LAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIR 616



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 24/178 (13%)

Query: 29  SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF---KEGKQMH 85
           SW   I    + G    A+  F +MR A +        S+  A+   +G         +H
Sbjct: 331 SWAYQIRMAASQGQFLHAISLFLQMR-ASVAPRSSVPASLPAALKSCAGLGLCTLAASLH 389

Query: 86  ALIFKIGYDSNVFVQNRLV--------FMYAI------------CGAINDANKVFSSMDE 125
           AL  + G  ++ F  N L+        F +                A     KVF  M E
Sbjct: 390 ALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLE 449

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           RD VSWN+L+LGCA H   +EA+ +  +M +    PD  T   VL        I +G+
Sbjct: 450 RDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGM 507


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 115/302 (38%), Positives = 182/302 (60%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y+ C + +D+   V+ S    + + WN+++AG+   GS E+AL  F  M QAG+     T
Sbjct: 215 YANC-TQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVT 273

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +S++ A G +S  + GKQ+HA + +  ++ N+F+ + L+ MY  CG ++ A +VF+ + 
Sbjct: 274 FSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQ 333

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             D+VSW ++++G A HG + EA  LFE+M+   +KP+  TFL VL+AC HAG +D G +
Sbjct: 334 SPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWK 393

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF  M N      P  EH  A+   LGRAG L+EA +FI+ M   P  SV+  LL AC+V
Sbjct: 394 YFNSMSNQYGFV-PSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRV 452

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N  +A   AK++ +L P     +V+LSN+  A+  W++A  +R  M  +G++K+P  S
Sbjct: 453 HKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACS 512

Query: 305 WV 306
           W+
Sbjct: 513 WI 514



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 1/177 (0%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
            + V+  +  R+ +SWN +I G       ++AL    EM + G   D FT+++++     
Sbjct: 123 MRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAE 182

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
            +  K G  +H    K G+D++VFV + L+ MYA C  ++ + KVF S  + D V WNS+
Sbjct: 183 CADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSM 242

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMR 190
           L G A +G   EA+ +F +M +  ++P   TF  ++ A  +   +  G Q + YL+R
Sbjct: 243 LAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIR 299



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 20/148 (13%)

Query: 36  GFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDS 95
           G C L +   AL       ++G   D FT  +++     + GF      +    + G +S
Sbjct: 63  GLCTLAASLHALAI-----RSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLES 117

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
             +   R               KVF  M ERD VSWN+L+LGCA H   +EA+ +  +M 
Sbjct: 118 AAYESMR---------------KVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMW 162

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           +    PD  T   VL        I +G+
Sbjct: 163 RDGFMPDTFTLSTVLPIFAECADIKRGM 190


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 179/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           + +CD   D +  + S+  +N +S+N  + G C     E A +  SE+ +  + +  FT 
Sbjct: 418 FVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTF 477

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++  +  +   ++G+Q+H+ + K+G   N  V N L+ MY+ CG+I+ A++VFS MD 
Sbjct: 478 ASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTASRVFSLMDN 537

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+++SW S++ G A HG++   ++ F QM K  +KP+  T++ +LSAC H G + +G ++
Sbjct: 538 RNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGWRH 597

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  ++ P+ EHY  +V LL RAG L +A  FIN+M       V++  L AC+VH
Sbjct: 598 FNSMYEDHKIK-PKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVH 656

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +A+++L+  PN+PA Y+ LSN+  +   W+++ ++R  M  R + K+ G SW
Sbjct: 657 SNTELGKLAARKILEFDPNEPAAYIQLSNIYASAGKWEESTEMRRKMKERNLVKEGGCSW 716

Query: 306 V 306
           +
Sbjct: 717 I 717



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 140/281 (49%), Gaps = 16/281 (5%)

Query: 6   YSRC--DSSLD-FQNVYSSVRTRNQISWNAIIAGF---CNLGSGEQALKCFSEM-RQAGI 58
           Y++C  D S+D  + V+  ++  + +SW A+I G+   CNL +  +A+  FSEM  Q  +
Sbjct: 312 YAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQNCNLAT--EAINLFSEMITQGHV 369

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           + ++FT +S   A G +S  + GKQ+    FK G  SN  V N ++ M+  C  + DA  
Sbjct: 370 EPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMFVKCDRMEDART 429

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
            F S+ E++LVS+N+ L G   +     A +L  ++ + E+     TF  +LS   + G 
Sbjct: 430 AFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTFASLLSGVANVGS 489

Query: 179 IDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
           + KG Q +  +++   S   P      A++ +  + G ++ A S + S+  N     + +
Sbjct: 490 LRKGEQIHSQVLKLGLSCNQPVC---NALISMYSKCGSIDTA-SRVFSLMDNRNVISWTS 545

Query: 238 LLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVS 276
           +++    HG  E  + +  ++    + PN+     +LS  S
Sbjct: 546 MITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACS 586



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 10/167 (5%)

Query: 15  FQN---VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA 71
           F+N   V+  +   N ++W  +I     +G   +A++ F +M  +G + D FT++S+  A
Sbjct: 219 FENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSA 278

Query: 72  IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC---GAINDANKVFSSMDERDL 128
              +     G+Q+H+   + G   +  V+  LV MYA C   G+++D  KVF  M +  +
Sbjct: 279 CAELENLSLGRQLHSWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSV 336

Query: 129 VSWNSLLLGCAHH-GYSREAVQLFEQM-QKTEIKPDGTTFLVVLSAC 173
           +SW +L+ G   +   + EA+ LF +M  +  ++P+  TF     AC
Sbjct: 337 MSWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 2/162 (1%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R+ +SW+A++A F N G    A+K F E  + G+  + +  T+++ A         G+ +
Sbjct: 129 RDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRACSNSDFVGVGRVI 188

Query: 85  HALIFKIG-YDSNVFVQNRLVFMYAIC-GAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
              + K G ++S+V V   L+ M+     +  +A KVF  M E ++V+W  ++  C   G
Sbjct: 189 LGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMG 248

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           + REA++ F  M  +  + D  T   V SAC     +  G Q
Sbjct: 249 FPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQ 290



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 76/148 (51%), Gaps = 4/148 (2%)

Query: 39  NLGSGEQALKCFSEMRQAGI-DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNV 97
           N G    A+     M + GI  +D  T +S++ +      F+ GK +HA + +   + + 
Sbjct: 38  NAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDS 97

Query: 98  FVQNRLVFMYAICGAINDANKVFSSMD---ERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
            + N L+ +Y+  G +  A  VF +M    +RD+VSW++++    ++G   +A++LF + 
Sbjct: 98  VLYNSLISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEF 157

Query: 155 QKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            +  + P+   +  V+ AC ++ F+  G
Sbjct: 158 LEMGLVPNDYCYTAVIRACSNSDFVGVG 185


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 189/307 (61%), Gaps = 7/307 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  S    ++++++++ ++ +SWNA+IAG+   G  E+AL  F  +++  +   ++T 
Sbjct: 334 YAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTF 393

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGY------DSNVFVQNRLVFMYAICGAINDANKV 119
            +++ A   ++  + G+Q H+ + K G+      + ++FV N L+ MY  CG++ +  +V
Sbjct: 394 GNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRV 453

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F +M E+D VSWN++++G A +GY  EA++LF++M ++  KPD  T +  L AC HAG +
Sbjct: 454 FENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLV 513

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           ++G +YF+ M  +  L P + +HYT +V LLGRAG L EA+  I SM + P   V+ +LL
Sbjct: 514 EEGRRYFFSMTKEHGLLPVK-DHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLL 572

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           SAC+VH N  +    A+++ ++ P     YVLL+N+      W DA  +R LM  RG+ K
Sbjct: 573 SACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVK 632

Query: 300 KPGYSWV 306
           +PG SW+
Sbjct: 633 QPGCSWI 639



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 13/215 (6%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++S +  ++Q SWN++IAGF      E+AL  F  M +    ++ ++  S + A   +  
Sbjct: 112 LFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKD 171

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K G Q+H LI K  Y  +VF+ + L+  Y+ CG +  A +VF  M+E+++VSWN L+  
Sbjct: 172 LKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITC 231

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM------RN 191
              +G + EA++ F +M +   KPD  T   V+SAC       +G+Q    +      RN
Sbjct: 232 YEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRN 291

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           D  L         A+V +  + G +NEA    + M
Sbjct: 292 DLILG-------NALVDMYAKCGRVNEARCVFDRM 319



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 101/211 (47%), Gaps = 32/211 (15%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + V+  +  +N +SWN +I  +   G   +AL+ F  M + G   D  T+
Sbjct: 201 YSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTL 260

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSM- 123
            S+V A   ++ FKEG Q+HA + K   + +++ + N LV MYA CG +N+A  VF  M 
Sbjct: 261 ASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMP 320

Query: 124 ------------------------------DERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                                          ++D+VSWN+L+ G   +G + EA+ LF  
Sbjct: 321 VRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRM 380

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++  + P   TF  +L+A  +   ++ G Q
Sbjct: 381 LKRESVCPTHYTFGNLLNASANLADLELGRQ 411



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 4/114 (3%)

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           ++ + +H  + +  +   VF+QNRL+ +Y  CG ++ A KVF  M ER++ S+NS++   
Sbjct: 41  RDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTL 100

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
              G+  E+  LF  M +     D  ++  +++        ++ L +F  M  D
Sbjct: 101 MRWGFVDESAWLFSLMPEK----DQCSWNSMIAGFAQHDRFEEALDWFVRMHRD 150


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 177/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C      Q++++ +  RN I+WNA++A   + G GE+ LK  S+MR  G+ +D 
Sbjct: 506 ITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQ 565

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F+ +  + A   ++  +EG+Q+H L  K+G++ + F+ N    MY+ CG I +  K+   
Sbjct: 566 FSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPP 625

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              R L SWN L+     HGY  E    F +M +  IKP   TF+ +L+AC H G +DKG
Sbjct: 626 SVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKG 685

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L Y+ ++  D  LEP   EH   ++ LLGR+G L EAE+FI+ M   P   V+++LL++C
Sbjct: 686 LAYYDMIARDFGLEPA-IEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASC 744

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN +   ++A+ +  L P D ++YVL SN+   T  W+D  ++R  M  + I+KK  
Sbjct: 745 KIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQA 804

Query: 303 YSWV 306
            SWV
Sbjct: 805 CSWV 808



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 125/256 (48%), Gaps = 36/256 (14%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG--FKEGK 82
           R+ ++WNA+I G+      ++AL  F  MR  G+  +Y T+ S++ A  ++ G   + GK
Sbjct: 426 RDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSAC-LLPGDLLERGK 484

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
            +HA I   G++S+  V+N L+ MYA CG ++ +  +F+ +D R++++WN++L   AHHG
Sbjct: 485 PLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHG 544

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-----MRNDA---- 193
           +  E ++L  +M+   +  D  +F   LSA      +++G Q   L       +D+    
Sbjct: 545 HGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFN 604

Query: 194 ----------------SLEPPRAEH----YTAIVGLLGRAGFLNEAESFINSMSR---NP 230
                            + PP        +  ++  LGR G+  E  +  + M      P
Sbjct: 605 AAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKP 664

Query: 231 GPSVYKALLSACQVHG 246
           G   + +LL+AC  HG
Sbjct: 665 GHVTFVSLLTACS-HG 679



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 13/223 (5%)

Query: 12  SLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVG 70
           ++D+ N ++  +  R+ ISWN+I A +   G  E++ + FS MR+   +++  T+++++ 
Sbjct: 210 NVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLS 269

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
            +G +   K G+ +H L+ K+G+DS V V N L+ MYA  G   +AN VF  M  +DL+S
Sbjct: 270 VLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLIS 329

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
           WNSL+    + G S +A+ L   M  +    +  TF   L+AC    F +KG       R
Sbjct: 330 WNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG-------R 382

Query: 191 NDASLEPPRAEHYTAIVG-----LLGRAGFLNEAESFINSMSR 228
               L       Y  I+G     + G+ G ++E+   +  M R
Sbjct: 383 ILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPR 425



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 122/249 (48%), Gaps = 4/249 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+    S++   V+  + T++ ISWN+++A F N G    AL     M  +G  ++Y T 
Sbjct: 306 YAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTF 365

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS + A      F++G+ +H L+   G   N  + N LV MY   G ++++ +V   M  
Sbjct: 366 TSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPR 425

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+V+WN+L+ G A      +A+  F+ M+   +  +  T + VLSAC   G + +  + 
Sbjct: 426 RDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKP 485

Query: 186 FYLMRNDASLEPPRAEHY-TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            +     A  E    EH   +++ +  + G L+ ++   N +  N     + A+L+A   
Sbjct: 486 LHAYIVSAGFESD--EHVKNSLITMYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAH 542

Query: 245 HGNREIAVR 253
           HG+ E  ++
Sbjct: 543 HGHGEEVLK 551



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 92/159 (57%), Gaps = 1/159 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++++  +  RN++SWN +++G   +G   + ++ F +M   GI    F I S+V A G  
Sbjct: 12  RHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRS 71

Query: 76  -SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
            S F+EG Q+H  + K G  S+V+V   ++ +Y + G ++ + KVF  M +R++VSW SL
Sbjct: 72  GSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSL 131

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           ++G +  G   E + +++ M+   +  +  +  +V+S+C
Sbjct: 132 MVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSC 170



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 87/160 (54%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  RN +SW +++ G+ + G  E+ +  +  MR  G+  +  +++ ++ + G++
Sbjct: 114 RKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLL 173

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+   + K G +S + V+N L+ M    G ++ AN +F  M ERD +SWNS+ 
Sbjct: 174 KDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIA 233

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
              A +G+  E+ ++F  M++   + + TT   +LS   H
Sbjct: 234 AAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGH 273



 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
           MY   G +  A  +F  M  R+ VSWN+++ G    G   E ++ F +M    IKP    
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 166 FLVVLSACCHAG-FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
              +++AC  +G    +G+Q    +     L        TAI+ L G  G ++ +     
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVS--TAILHLYGVYGLVSCSRKVFE 118

Query: 225 SM 226
            M
Sbjct: 119 EM 120


>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
          Length = 518

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 178/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      +++++ +  R+ + WN+II+G       ++A   F +MR+ GI     + 
Sbjct: 169 YSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSY 228

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   +S    G+Q+HA + K GYD NV+V + L+ MYA CG ++DA   F +M  
Sbjct: 229 ASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMM 288

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++V+WN ++ G A +G   +AV+LFE M  TE KPD  TF+ VL+ C H+G +DK + +
Sbjct: 289 KNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAF 348

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M N   +  P AEHYT ++  LGRAG   E E+ I+ M     P +++ LL+AC VH
Sbjct: 349 FNSMENSYGI-IPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVH 407

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +A+ +  + P +P+ YVLLSN+  +     DA  +R LM NRG+ K  GYSW
Sbjct: 408 HNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSW 467

Query: 306 V 306
           +
Sbjct: 468 I 468



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 4   LTYSRCDSS-LDFQNVYSSVRTRNQIS------WNAIIAGFCNLGSGEQALKCFSEMRQA 56
           +TYS   +S +  ++V+S+    ++IS      WN +++G+C     +  ++ F  M+  
Sbjct: 59  VTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQ 118

Query: 57  GIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
            +  D  T+  I+ +   +     G+Q+H+   +    +++FV + LV MY+ CG I  A
Sbjct: 119 NVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIA 178

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
             +F+ M ERD+V WNS++ G   H  ++EA   F+QM++  I P  +++  ++++C   
Sbjct: 179 RSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRL 238

Query: 177 GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
             I  G Q    +  D   +       +A++ +  + G +++A  F ++M
Sbjct: 239 SSIPHGRQIHAQVMKDGYDQNVYVG--SALIDMYAKCGNMDDARLFFDTM 286



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 109/250 (43%), Gaps = 49/250 (19%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    +   V+ S+ +   +SWN +I GF   GS  +A++  S M++AG + +  T 
Sbjct: 2   YTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTY 61

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++ +        + + +H+                             A  +F  +  
Sbjct: 62  SNLLASC------IKARDVHS-----------------------------ARAMFDKISR 86

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
             + +WN+LL G       ++ ++LF +MQ   ++PD TT  V+LS+C   G +D G Q 
Sbjct: 87  PSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQV 146

Query: 186 F-----YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
                 +L+ ND  +        + +V +  + G +  A S  N M+       + +++S
Sbjct: 147 HSASVRFLLHNDMFVA-------SGLVDMYSKCGQIGIARSIFNKMTER-DVVCWNSIIS 198

Query: 241 ACQVHG-NRE 249
              +H  N+E
Sbjct: 199 GLTIHSLNKE 208



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 7/143 (4%)

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
           MY  C  +++A KVF S+    +VSWN L+ G    G   +AV++   MQ+   +P+  T
Sbjct: 1   MYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT 60

Query: 166 FLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINS 225
           +  +L++C  A  +      F     D    P      T + G        +  E F   
Sbjct: 61  YSNLLASCIKARDVHSARAMF-----DKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRM 115

Query: 226 MSRN--PGPSVYKALLSACQVHG 246
             +N  P  +    +LS+C   G
Sbjct: 116 QHQNVQPDRTTLAVILSSCSKLG 138


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 177/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C      Q++++ +  RN I+WNA++A   + G GE+ LK  S+MR  G+ +D 
Sbjct: 489 ITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQ 548

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F+ +  + A   ++  +EG+Q+H L  K+G++ + F+ N    MY+ CG I +  K+   
Sbjct: 549 FSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPP 608

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              R L SWN L+     HGY  E    F +M +  IKP   TF+ +L+AC H G +DKG
Sbjct: 609 SVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKG 668

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L Y+ ++  D  LEP   EH   ++ LLGR+G L EAE+FI+ M   P   V+++LL++C
Sbjct: 669 LAYYDMIARDFGLEPA-IEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASC 727

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN +   ++A+ +  L P D ++YVL SN+   T  W+D  ++R  M  + I+KK  
Sbjct: 728 KIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQA 787

Query: 303 YSWV 306
            SWV
Sbjct: 788 CSWV 791



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 131/275 (47%), Gaps = 36/275 (13%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +     + + V   +  R+ ++WNA+I G+      ++AL  F  MR  G+  +Y T+
Sbjct: 390 YGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITV 449

Query: 66  TSIVGAIGVISG--FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            S++ A  ++ G   + GK +HA I   G++S+  V+N L+ MYA CG ++ +  +F+ +
Sbjct: 450 VSVLSAC-LLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL 508

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           D R++++WN++L   AHHG+  E ++L  +M+   +  D  +F   LSA      +++G 
Sbjct: 509 DNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQ 568

Query: 184 QYFYL-----MRNDA--------------------SLEPPRAEH----YTAIVGLLGRAG 214
           Q   L       +D+                     + PP        +  ++  LGR G
Sbjct: 569 QLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHG 628

Query: 215 FLNEAESFINSMSR---NPGPSVYKALLSACQVHG 246
           +  E  +  + M      PG   + +LL+AC  HG
Sbjct: 629 YFEEVCATFHEMLEMGIKPGHVTFVSLLTACS-HG 662



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 13/223 (5%)

Query: 12  SLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVG 70
           ++D+ N ++  +  R+ ISWN+I A +   G  E++ + FS MR+   +++  T+++++ 
Sbjct: 193 NVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLS 252

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
            +G +   K G+ +H L+ K+G+DS V V N L+ MYA  G   +AN VF  M  +DL+S
Sbjct: 253 VLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLIS 312

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
           WNSL+    + G S +A+ L   M  +    +  TF   L+AC    F +KG       R
Sbjct: 313 WNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG-------R 365

Query: 191 NDASLEPPRAEHYTAIVG-----LLGRAGFLNEAESFINSMSR 228
               L       Y  I+G     + G+ G ++E+   +  M R
Sbjct: 366 ILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPR 408



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 122/249 (48%), Gaps = 4/249 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+    S++   V+  + T++ ISWN+++A F N G    AL     M  +G  ++Y T 
Sbjct: 289 YAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTF 348

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS + A      F++G+ +H L+   G   N  + N LV MY   G ++++ +V   M  
Sbjct: 349 TSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPR 408

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+V+WN+L+ G A      +A+  F+ M+   +  +  T + VLSAC   G + +  + 
Sbjct: 409 RDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKP 468

Query: 186 FYLMRNDASLEPPRAEHY-TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            +     A  E    EH   +++ +  + G L+ ++   N +  N     + A+L+A   
Sbjct: 469 LHAYIVSAGFESD--EHVKNSLITMYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAH 525

Query: 245 HGNREIAVR 253
           HG+ E  ++
Sbjct: 526 HGHGEEVLK 534



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI-SGFKEGK 82
            RN++SWN +++G   +G   + ++ F +M   GI    F I S+V A G   S F+EG 
Sbjct: 3   VRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGV 62

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           Q+H  + K G  S+V+V   ++ +Y + G ++ + KVF  M +R++VSW SL++G +  G
Sbjct: 63  QVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKG 122

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
              E + +++ M+   +  +  +  +V+S+C
Sbjct: 123 EPEEVIDIYKGMRGEGVGCNENSMSLVISSC 153



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 87/160 (54%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  RN +SW +++ G+ + G  E+ +  +  MR  G+  +  +++ ++ + G++
Sbjct: 97  RKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLL 156

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+   + K G +S + V+N L+ M    G ++ AN +F  M ERD +SWNS+ 
Sbjct: 157 KDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIA 216

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
              A +G+  E+ ++F  M++   + + TT   +LS   H
Sbjct: 217 AAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGH 256


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 176/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S    Q ++  +  +  ISWNA+++G+   G     L+ +  M   G+  D 
Sbjct: 194 ITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDP 253

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+  ++ +   +     G ++   I   G+ SN F+ N L+ MYA CG +  A  VF  
Sbjct: 254 VTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDG 313

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER LVSW +++ G   HG+   AVQLF++M ++ I+PDGT F+ VLSAC HAG  D+G
Sbjct: 314 MPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQG 373

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+YF +M+ +  LE P  EHY+ +V LLGRAG L EA++ I SM   P  +V+ ALL AC
Sbjct: 374 LEYFKMMKRNYQLE-PGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGAC 432

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N E+A  + +RV++L P +   YVLLSN+    +       IR +M  + ++K PG
Sbjct: 433 KIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPG 492

Query: 303 YSWV 306
            S+V
Sbjct: 493 CSYV 496



 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 137/277 (49%), Gaps = 7/277 (2%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           + +NA+++G+ +     +A+  F +M + G+ ++  T+  ++ A       + G  +H  
Sbjct: 118 VCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCS 177

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
             K G+DS+V V N  + MY  CG++N A K+F  M  + L+SWN+++ G A +G +   
Sbjct: 178 TLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNV 237

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           ++L+  M    + PD  T + VLS+C + G    G +  + ++       P   +  A++
Sbjct: 238 LELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNN--ALI 295

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL--DLWPND 265
            +  R G L +A++  + M      S + A++    +HG+ EIAV+  K ++   + P+ 
Sbjct: 296 NMYARCGNLTKAQAVFDGMPERTLVS-WTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDG 354

Query: 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            A   +LS  S A     D G     M  R  + +PG
Sbjct: 355 TAFVCVLSACSHAG--LTDQGLEYFKMMKRNYQLEPG 389



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 4/155 (2%)

Query: 23  RTRNQIS--WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE 80
           ++ N +S  WN  +          QAL  + +M + G   + FT    + +   +S    
Sbjct: 8   KSMNALSTPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPIL 67

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF-SSMDERDL-VSWNSLLLGC 138
           G Q H  I K+G     FVQ  L+ MY     +++A KVF  +   R L V +N+L+ G 
Sbjct: 68  GSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGY 127

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
             +    EAV LF QM +  +  +  T L ++ AC
Sbjct: 128 VSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPAC 162


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C  +     V+  ++ R+ ++WN++I GF   G   +AL  F EM   G++ D FT+
Sbjct: 163 YAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTV 222

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +   + G+++H  + K+G   N  V N L+ +YA CGAI +A +VFS M E
Sbjct: 223 VSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSE 282

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSW SL++G A +G+  EA++LF++M+   + P   TF+ VL AC H G +D+G +Y
Sbjct: 283 RNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEY 342

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+ +  +  PR EHY  +V LL RAG + +A  +I +M   P   +++ LL AC +H
Sbjct: 343 FRRMKEECGI-IPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIH 401

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+  +   +   +L+L P     YVLLSN+  +   W D   IR  M   G++K PGYS 
Sbjct: 402 GHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSL 461

Query: 306 V 306
           V
Sbjct: 462 V 462



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 130/244 (53%), Gaps = 7/244 (2%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           NV++ +   N  +WN II G+    +   A   + +M  + ++ D  T   ++ AI    
Sbjct: 73  NVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSL 132

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             +EG+ +H++  + G++S VFVQN L+ +YA CG    A KVF  M ERDLV+WNS++ 
Sbjct: 133 NVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMIN 192

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASL 195
           G A +G   EA+ LF +M    ++PDG T + +LSA    G ++ G + + YL++   S 
Sbjct: 193 GFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLS- 251

Query: 196 EPPRAEHYT-AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
              +  H T +++ L  + G + EA+   + MS     S + +L+    V+G  E A+  
Sbjct: 252 ---KNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVS-WTSLIVGLAVNGFGEEALEL 307

Query: 255 AKRV 258
            K +
Sbjct: 308 FKEM 311


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            Y +C      + +++ + + + ++W  +I+G    G  E AL  +  MR + +  D +T 
Sbjct: 1154 YLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTF 1213

Query: 66   TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++V A  +++  ++G+Q+HA   K+    + FV   LV MYA CG I DA  +F   + 
Sbjct: 1214 ATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNT 1273

Query: 126  RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
              + SWN++++G A HG + EA+Q FE+M+   + PD  TF+ VLSAC H+G + +  + 
Sbjct: 1274 SRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYEN 1333

Query: 186  FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            FY M+    +E P  EHY+ +V  L RAG + EAE  I+SM      S+Y+ LL+AC+V 
Sbjct: 1334 FYSMQKIYGIE-PEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQ 1392

Query: 246  GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
             +RE   R A+++L L P+D A YVLLSNV  A + W++    R +M    ++K PG+SW
Sbjct: 1393 VDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSW 1452

Query: 306  V 306
            V
Sbjct: 1453 V 1453



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 122/226 (53%), Gaps = 5/226 (2%)

Query: 29   SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
            SWNA++ G+   G   +AL+ +  M+++G   +  T+ +   A G + G K+GKQ+ A++
Sbjct: 1076 SWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVV 1135

Query: 89   FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
             K G++ ++FV + ++ MY  CG +  A ++F+ +   D V+W +++ GC  +G    A+
Sbjct: 1136 VKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHAL 1195

Query: 149  QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIV 207
              +  M+ ++++PD  TF  ++ AC     +++G Q +   ++ + + +P      T++V
Sbjct: 1196 FTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFV---MTSLV 1252

Query: 208  GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
             +  + G + +A       + +   S + A++     HGN E A++
Sbjct: 1253 DMYAKCGNIEDARGLFKRTNTSRIAS-WNAMIVGLAQHGNAEEALQ 1297



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 80/150 (53%)

Query: 28   ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
            I+WN  ++ F   G   +A+ CF +M  + +  D  T   ++  +  ++  + GKQ+H +
Sbjct: 872  IAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGI 931

Query: 88   IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
            + + G D  V V N L+ MY   G+++ A  VF  M+E DLVSWN+++ GCA  G    +
Sbjct: 932  VVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECS 991

Query: 148  VQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
            V +F  + +  + PD  T   VL AC   G
Sbjct: 992  VGMFVDLLRGGLLPDQFTVASVLRACSSLG 1021



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 4/166 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           I  YS+C S    + ++ +    +R+ ++WNAI++   +          F  +R++ +  
Sbjct: 668 ITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHAD--KARDGFHLFRLLRRSFVSA 725

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
              T+  +     + +     + +H    KIG   +VFV   LV +YA  G I +A  +F
Sbjct: 726 TRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLF 785

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
             M  RD+V WN ++      G   EA+ LF +  +T ++PD  T 
Sbjct: 786 DGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTL 831



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 1/165 (0%)

Query: 3    ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
            I  Y +  S    + V+  +   + +SWN +I+G    G  E ++  F ++ + G+  D 
Sbjct: 948  INMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQ 1007

Query: 63   FTITSIVGAIGVISG-FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            FT+ S++ A   + G      Q+HA   K G   + FV   L+ +Y+  G + +A  +F 
Sbjct: 1008 FTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFV 1067

Query: 122  SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
            + D  DL SWN+++ G    G   +A++L+  MQ++  + +  T 
Sbjct: 1068 NQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITL 1112



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDLVSWNSLLLGC 138
           GK+ HA I   G+  + F+ N L+ MY+ CG+++ A K+F +  +  RDLV+WN++L   
Sbjct: 645 GKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAIL--S 702

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           AH   +R+   LF  ++++ +     T   V   C
Sbjct: 703 AHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMC 737



 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 27/169 (15%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ + WN ++  + + G   +AL  FSE  + G+  D  T+ ++   +     
Sbjct: 784 LFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQN 843

Query: 78  FKEG--KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             E   KQ+ A   K+             FMY                D  D+++WN  L
Sbjct: 844 VLEWQLKQLKAYGTKL-------------FMYD------------DDDDGSDVIAWNKTL 878

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
                 G + EAV  F  M  + +  DG TF+V+LS       ++ G Q
Sbjct: 879 SWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQ 927


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 178/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      +++++ +  R+ + WN+II+G       ++A   F +MR+ GI     + 
Sbjct: 185 YSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSY 244

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   +S    G+Q+HA + K GYD NV+V + L+ MYA CG ++DA   F +M  
Sbjct: 245 ASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMM 304

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++V+WN ++ G A +G   +AV+LFE M  TE KPD  TF+ VL+ C H+G +DK + +
Sbjct: 305 KNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAF 364

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M N   +  P AEHYT ++  LGRAG   E E+ I+ M     P +++ LL+AC VH
Sbjct: 365 FNSMENSYGI-IPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVH 423

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +A+ +  + P +P+ YVLLSN+  +     DA  +R LM NRG+ K  GYSW
Sbjct: 424 HNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSW 483

Query: 306 V 306
           +
Sbjct: 484 I 484



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 4   LTYSRCDSS-LDFQNVYSSVRTRNQIS------WNAIIAGFCNLGSGEQALKCFSEMRQA 56
           +TYS   +S +  ++V+S+    ++IS      WN +++G+C     +  ++ F  M+  
Sbjct: 75  VTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQ 134

Query: 57  GIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
            +  D  T+  I+ +   +     G+Q+H+   +    +++FV + LV MY+ CG I  A
Sbjct: 135 NVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIA 194

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
             +F+ M ERD+V WNS++ G   H  ++EA   F+QM++  I P  +++  ++++C   
Sbjct: 195 RSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRL 254

Query: 177 GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
             I  G Q    +  D   +       +A++ +  + G +++A  F ++M
Sbjct: 255 SSIPHGRQIHAQVMKDGYDQNVYVG--SALIDMYAKCGNMDDARLFFDTM 302



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 110/253 (43%), Gaps = 49/253 (19%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C    +   V+ S+ +   +SWN +I GF   GS  +A++  S M++AG + + 
Sbjct: 15  IDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNE 74

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T ++++ +        + + +H+                             A  +F  
Sbjct: 75  VTYSNLLASC------IKARDVHS-----------------------------ARAMFDK 99

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +    + +WN+LL G       ++ ++LF +MQ   ++PD TT  V+LS+C   G +D G
Sbjct: 100 ISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFG 159

Query: 183 LQYF-----YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
            Q       +L+ ND  +        + +V +  + G +  A S  N M+       + +
Sbjct: 160 RQVHSASVRFLLHNDMFVA-------SGLVDMYSKCGQIGIARSIFNKMTERD-VVCWNS 211

Query: 238 LLSACQVHG-NRE 249
           ++S   +H  N+E
Sbjct: 212 IISGLTIHSLNKE 224



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 7/157 (4%)

Query: 92  GYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLF 151
           G+ S+  V N L+ MY  C  +++A KVF S+    +VSWN L+ G    G   +AV++ 
Sbjct: 3   GFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVL 62

Query: 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLG 211
             MQ+   +P+  T+  +L++C  A  +      F     D    P      T + G   
Sbjct: 63  SLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMF-----DKISRPSVTTWNTLLSGYCQ 117

Query: 212 RAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHG 246
                +  E F     +N  P  +    +LS+C   G
Sbjct: 118 EEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLG 154


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 177/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C      Q++++ +  RN I+WNA++A   + G GE+ LK  S+MR  G+ +D 
Sbjct: 596 ITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQ 655

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F+ +  + A   ++  +EG+Q+H L  K+G++ + F+ N    MY+ CG I +  K+   
Sbjct: 656 FSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPP 715

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              R L SWN L+     HGY  E    F +M +  IKP   TF+ +L+AC H G +DKG
Sbjct: 716 SVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKG 775

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L Y+ ++  D  LEP   EH   ++ LLGR+G L EAE+FI+ M   P   V+++LL++C
Sbjct: 776 LAYYDMIARDFGLEPA-IEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASC 834

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN +   ++A+ +  L P D ++YVL SN+   T  W+D  ++R  M  + I+KK  
Sbjct: 835 KIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQA 894

Query: 303 YSWV 306
            SWV
Sbjct: 895 CSWV 898



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 131/275 (47%), Gaps = 36/275 (13%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +     + + V   +  R+ ++WNA+I G+      ++AL  F  MR  G+  +Y T+
Sbjct: 497 YGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITV 556

Query: 66  TSIVGAIGVISG--FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            S++ A  ++ G   + GK +HA I   G++S+  V+N L+ MYA CG ++ +  +F+ +
Sbjct: 557 VSVLSAC-LLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL 615

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           D R++++WN++L   AHHG+  E ++L  +M+   +  D  +F   LSA      +++G 
Sbjct: 616 DNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQ 675

Query: 184 QYFYL-----MRNDA--------------------SLEPPRAEH----YTAIVGLLGRAG 214
           Q   L       +D+                     + PP        +  ++  LGR G
Sbjct: 676 QLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHG 735

Query: 215 FLNEAESFINSMSR---NPGPSVYKALLSACQVHG 246
           +  E  +  + M      PG   + +LL+AC  HG
Sbjct: 736 YFEEVCATFHEMLEMGIKPGHVTFVSLLTACS-HG 769



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 13/223 (5%)

Query: 12  SLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVG 70
           ++D+ N ++  +  R+ ISWN+I A +   G  E++ + FS MR+   +++  T+++++ 
Sbjct: 300 NVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLS 359

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
            +G +   K G+ +H L+ K+G+DS V V N L+ MYA  G   +AN VF  M  +DL+S
Sbjct: 360 VLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLIS 419

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
           WNSL+    + G S +A+ L   M  +    +  TF   L+AC    F +KG       R
Sbjct: 420 WNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG-------R 472

Query: 191 NDASLEPPRAEHYTAIVG-----LLGRAGFLNEAESFINSMSR 228
               L       Y  I+G     + G+ G ++E+   +  M R
Sbjct: 473 ILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPR 515



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 122/249 (48%), Gaps = 4/249 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+    S++   V+  + T++ ISWN+++A F N G    AL     M  +G  ++Y T 
Sbjct: 396 YAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTF 455

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS + A      F++G+ +H L+   G   N  + N LV MY   G ++++ +V   M  
Sbjct: 456 TSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPR 515

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+V+WN+L+ G A      +A+  F+ M+   +  +  T + VLSAC   G + +  + 
Sbjct: 516 RDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKP 575

Query: 186 FYLMRNDASLEPPRAEHY-TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            +     A  E    EH   +++ +  + G L+ ++   N +  N     + A+L+A   
Sbjct: 576 LHAYIVSAGFESD--EHVKNSLITMYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAH 632

Query: 245 HGNREIAVR 253
           HG+ E  ++
Sbjct: 633 HGHGEEVLK 641



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 81/138 (58%), Gaps = 1/138 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++++  +  RN++SWN +++G   +G   + ++ F +M   GI    F I S+V A G  
Sbjct: 127 RHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRS 186

Query: 76  -SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
            S F+EG Q+H  + K G  S+V+V   ++ +Y + G ++ + KVF  M +R++VSW SL
Sbjct: 187 GSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSL 246

Query: 135 LLGCAHHGYSREAVQLFE 152
           ++G +  G   E + +++
Sbjct: 247 MVGYSDKGEPEEVIDIYK 264



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 25/160 (15%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  RN +SW +++ G+ + G  E+              ID +   S+       
Sbjct: 229 RKVFEEMPDRNVVSWTSLMVGYSDKGEPEEV-------------IDIYKDESL------- 268

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+   + K G +S + V+N L+ M    G ++ AN +F  M ERD +SWNS+ 
Sbjct: 269 -----GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIA 323

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
              A +G+  E+ ++F  M++   + + TT   +LS   H
Sbjct: 324 AAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGH 363



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G+ +HAL  K     +V   N L+ MY   G +  A  +F  M  R+ VSWN+++ G   
Sbjct: 91  GRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVR 150

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG-FIDKGLQYFYLMRNDASLEPPR 199
            G   E ++ F +M    IKP       +++AC  +G    +G+Q    +     L    
Sbjct: 151 VGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 210

Query: 200 AEHYTAIVGLLGRAGFLNEAESFINSM 226
               TAI+ L G  G ++ +      M
Sbjct: 211 VS--TAILHLYGVYGLVSCSRKVFEEM 235


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 178/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      +++++ +  R+ + WN+II+G       ++A   F +MR+ GI     + 
Sbjct: 462 YSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSY 521

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   +S    G+Q+HA + K GYD NV+V + L+ MYA CG ++DA   F +M  
Sbjct: 522 ASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMM 581

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++V+WN ++ G A +G   +AV+LFE M  TE KPD  TF+ VL+ C H+G +DK + +
Sbjct: 582 KNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAF 641

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M N   +  P AEHYT ++  LGRAG   E E+ I+ M     P +++ LL+AC VH
Sbjct: 642 FNSMENSYGI-IPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVH 700

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +A+ +  + P +P+ YVLLSN+  +     DA  +R LM NRG+ K  GYSW
Sbjct: 701 HNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSW 760

Query: 306 V 306
           +
Sbjct: 761 I 761



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 100/179 (55%), Gaps = 8/179 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D   ++  +   N++S+ A++ G    GS + AL+ F+ M ++G+ +D  ++
Sbjct: 186 YTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSV 245

Query: 66  TSIVGAIG--------VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
           +S++GA          V   F+ G+ +HAL+ + G+ S+  V N L+ MY  C  +++A 
Sbjct: 246 SSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAV 305

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
           KVF S+    +VSWN L+ G    G   +AV++   MQ+   +P+  T+  +L++C  A
Sbjct: 306 KVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKA 364



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 25  RNQISWNAIIAGFC-NLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           RN +SWN +I+    + G G +A++ +  MR  G+   +FT+ S++ A G ++   +G++
Sbjct: 103 RNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRR 162

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
            H +  K+G D+N FV+N L+ MY  CG++ DA ++F  M   + VS+ +++ G A  G 
Sbjct: 163 CHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGS 222

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             +A++LF +M ++ +  D  +   VL AC  A   D
Sbjct: 223 IDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATD 259



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 4   LTYSRCDSS-LDFQNVYSSVRTRNQIS------WNAIIAGFCNLGSGEQALKCFSEMRQA 56
           +TYS   +S +  ++V+S+    ++IS      WN +++G+C     +  ++ F  M+  
Sbjct: 352 VTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQ 411

Query: 57  GIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
            +  D  T+  I+ +   +     G+Q+H+   +    +++FV + LV MY+ CG I  A
Sbjct: 412 NVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIA 471

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
             +F+ M ERD+V WNS++ G   H  ++EA   F+QM++  I P  +++  ++++C   
Sbjct: 472 RSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRL 531

Query: 177 GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
             I  G Q    +  D   +       +A++ +  + G +++A  F ++M
Sbjct: 532 SSIPHGRQIHAQVMKDGYDQNVYVG--SALIDMYAKCGNMDDARLFFDTM 579



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 110/253 (43%), Gaps = 49/253 (19%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C    +   V+ S+ +   +SWN +I GF   GS  +A++  S M++AG + + 
Sbjct: 292 IDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNE 351

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T ++++ +        + + +H+                             A  +F  
Sbjct: 352 VTYSNLLASC------IKARDVHS-----------------------------ARAMFDK 376

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +    + +WN+LL G       ++ ++LF +MQ   ++PD TT  V+LS+C   G +D G
Sbjct: 377 ISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFG 436

Query: 183 LQYF-----YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
            Q       +L+ ND  +        + +V +  + G +  A S  N M+       + +
Sbjct: 437 RQVHSASVRFLLHNDMFVA-------SGLVDMYSKCGQIGIARSIFNKMTERD-VVCWNS 488

Query: 238 LLSACQVHG-NRE 249
           ++S   +H  N+E
Sbjct: 489 IISGLTIHSLNKE 501



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 78/211 (36%), Gaps = 64/211 (30%)

Query: 96  NVFVQNRLVFMY-----------------------------AIC--GAINDANKVFSSMD 124
           + F+ NRLV +Y                             A C  G ++ A  +   M 
Sbjct: 42  DTFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMP 101

Query: 125 ERDLVSWNSLLLGCAHH-GYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC---------- 173
            R+ VSWN+++   A   G   EAV+++ +M+   + P   T   VLSAC          
Sbjct: 102 RRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGR 161

Query: 174 -CHAGFIDKGLQYFYLMRN-------------DA-----SLEPPRAEHYTAIVGLLGRAG 214
            CH   +  GL     + N             DA      +  P    +TA++G L + G
Sbjct: 162 RCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTG 221

Query: 215 FLNEAESFINSMSRNP---GPSVYKALLSAC 242
            +++A      M R+     P    ++L AC
Sbjct: 222 SIDDALRLFARMCRSGVPVDPVSVSSVLGAC 252


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 180/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C    D    +  +R   + +SWNAI+         E+  +    M  +    DY T
Sbjct: 412 YAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYIT 471

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +T+++GA       + G Q+H    K G + +  V N L+ +YA CG++  A+K+F SM 
Sbjct: 472 LTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMI 531

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             D+VSW+SL+LG A  GY  EA++LF+ M++ ++KP+  TF+ VL+AC H G +++G +
Sbjct: 532 NPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWK 591

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            +  M  +  + P R EH + +V LL RAG LNEAE FI+ M+ +P   V+K LL+AC+ 
Sbjct: 592 LYGTMEKEFGIAPTR-EHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKT 650

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN ++  R+A+ +L + P++ A +VLL N+  +   W+D   +R+LM  RG+RK PG S
Sbjct: 651 HGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWEDVARLRSLMKQRGVRKVPGQS 710

Query: 305 WV 306
           W+
Sbjct: 711 WI 712



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 141/279 (50%), Gaps = 7/279 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-D 61
           I  Y++ +  +D  +V+S + TR+ ISW ++IAGF  LG   +AL  F EM   G+ + +
Sbjct: 206 ISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPN 265

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            F   S+  A   +   + G+Q+H +  K G   +VF    L  MYA CG ++ A  VF 
Sbjct: 266 EFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFY 325

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            +   DLV+WN+++ G A+ G ++EA+  F QM+   + PD  T   +L AC     + +
Sbjct: 326 QIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQ 385

Query: 182 GLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           G+Q + Y+ +    L+ P       ++ +  +   L +A  F   M  N     + A+L+
Sbjct: 386 GMQVHGYINKMGLDLDVPVC---NTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILT 442

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKAT 279
           AC  H   E   R  K ++ +  + P  Y+ L+NV  A+
Sbjct: 443 ACMRHDQAEEVFRLLK-LMCISQHRPD-YITLTNVLGAS 479



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 1/169 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D Q V+ ++  RN +SW ++IAG+   G G  AL+ + +M Q+G+  D FT 
Sbjct: 108 YGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTF 167

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A   +     G+Q+HA + K  + +++  QN L+ MY     I DA  VFS M  
Sbjct: 168 GSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMAT 227

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK-PDGTTFLVVLSAC 173
           RDL+SW S++ G +  GY  EA+  F++M    +  P+   F  V SAC
Sbjct: 228 RDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSAC 276



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 88/171 (51%), Gaps = 3/171 (1%)

Query: 17  NVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIG 73
           NV  +V  + R + S N  I   C      +A+K F  + ++ G  +   T   ++ A  
Sbjct: 15  NVKETVLSKLRAEQSSNEYITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACS 74

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +   + GK++H  + K     ++ +QN ++ MY  C ++ DA KVF +M ER++VSW S
Sbjct: 75  YLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTS 134

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++ G + +G    A++ + QM ++ + PD  TF  ++ AC   G I  G Q
Sbjct: 135 VIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQ 185


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 180/302 (59%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           TY +C+   +   ++      + +++ ++I  +   G GE+ALK + +M+ A I  D F 
Sbjct: 429 TYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFI 488

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +S++ A   +S +++GKQ+H    K G+  ++F  N LV MYA CG+I DA++ FS + 
Sbjct: 489 CSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIP 548

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            R +VSW++++ G A HG+ +EA++LF QM +  + P+  T + VL AC HAG +++G Q
Sbjct: 549 NRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQ 608

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF  M     ++P + EHY  ++ LLGR+G LNEA   +NS+       V+ ALL A ++
Sbjct: 609 YFEKMEVMFGIKPTQ-EHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARI 667

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N E+  ++AK + DL P     +VLL+N+  +   W++   +R  M +  ++K+PG S
Sbjct: 668 HKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMS 727

Query: 305 WV 306
           W+
Sbjct: 728 WI 729



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 132/254 (51%), Gaps = 3/254 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C+   D +  Y S+  ++ I+WNA+I+G+   G    A+  FS+M    ID +  T+
Sbjct: 329 YSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTL 388

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++ ++  +   K  KQ+H +  K G  S+ +V N L+  Y  C  I++A+K+F     
Sbjct: 389 STVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTW 448

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            DLV++ S++   + +G   EA++L+ QMQ  +IKPD      +L+AC +    ++G Q 
Sbjct: 449 EDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQL 508

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
                    +    A +  ++V +  + G + +A+   + +  N G   + A++     H
Sbjct: 509 HVHAIKFGFMCDIFASN--SLVNMYAKCGSIEDADRAFSEIP-NRGIVSWSAMIGGYAQH 565

Query: 246 GNREIAVRSAKRVL 259
           G+ + A+R   ++L
Sbjct: 566 GHGKEALRLFNQML 579



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 131/251 (52%), Gaps = 5/251 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+C      + +       + +SW+++++G+   G  E+AL  F+EM   G+  + 
Sbjct: 23  VTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNE 82

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++ A  +      G+++H +    G++S+ FV N LV MYA CG ++D+ ++F  
Sbjct: 83  FTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGG 142

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ER++VSWN+L           EAV LF++M ++ I P+  +  ++L+AC      D G
Sbjct: 143 IVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLG 202

Query: 183 LQYFYLM-RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            +   LM +    L+   A    A+V +  +AG +  A +    ++ +P    + A+++ 
Sbjct: 203 RKIHGLMLKMGLDLDQFSA---NALVDMYSKAGEIEGAVAVFQDIA-HPDVVSWNAIIAG 258

Query: 242 CQVHGNREIAV 252
           C +H   ++A+
Sbjct: 259 CVLHDCNDLAL 269



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 118/228 (51%), Gaps = 4/228 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ Y++C    D + ++  +  RN +SWNA+ + +       +A+  F EM ++GI  + 
Sbjct: 124 VVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNE 183

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F+I+ I+ A   +     G+++H L+ K+G D + F  N LV MY+  G I  A  VF  
Sbjct: 184 FSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQD 243

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +   D+VSWN+++ GC  H  +  A+ L ++M+ +  +P+  T    L AC   GF + G
Sbjct: 244 IAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELG 303

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
            Q +  L++ DA  +   A     +V +  +   +++A    +SM + 
Sbjct: 304 RQLHSSLIKMDAHSDLFAA---VGLVDMYSKCEMMDDARRAYDSMPKK 348



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           ++HA + K G+  +  ++N LV +Y+ C     A K+     E D+VSW+SLL G   +G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +  EA+ +F +M    +K +  TF  VL AC
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKAC 92


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           + +C +  D   ++S +  R+ +SWN+++A +   G   +AL  F +MR  G+     T+
Sbjct: 333 FVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATV 392

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +    +G  +H  I     + N  V   LV MYA CG I+ A +VF++M+ 
Sbjct: 393 VSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMES 452

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+++WN+++ G A HG  +EA QLF++M++  ++P+  TF+ +LSAC HAG +D+G + 
Sbjct: 453 KDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKL 512

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M +   +E P+ EHY  ++ LL RAGFL EA   I +M   P PS   ALL  C++H
Sbjct: 513 LDCMSSSYGIE-PKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIH 571

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+     KR+++L P     Y+LLSN+  A   WDDA  +R LM   GI K PG S 
Sbjct: 572 GNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSV 631

Query: 306 V 306
           +
Sbjct: 632 I 632



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 129/265 (48%), Gaps = 13/265 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + +++    R+ +SWNA+I G+        A   F  M    +  D  +  +++    ++
Sbjct: 250 KQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRM----VCRDVISWNTMINGYAIV 305

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               E K++    F    + N+   N ++  +  CG + DA  +FS M  RD+VSWNS+L
Sbjct: 306 GKIDEAKRL----FDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSML 361

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
              A  G   EA+ LF+QM+   +KP   T + +LSAC H G +DKGL + +   ND  +
Sbjct: 362 ACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGL-HLHTYINDNRI 420

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           E   +   TA+V +  + G ++ A    N+M  +     +  +++   +HGN + A +  
Sbjct: 421 E-VNSIVGTALVDMYAKCGKISLATQVFNAM-ESKDVLAWNTIIAGMAIHGNVKEAQQLF 478

Query: 256 KRVLD--LWPNDPAIYVLLSNVSKA 278
           K + +  + PND     +LS  S A
Sbjct: 479 KEMKEAGVEPNDITFVAILSACSHA 503



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 64/125 (51%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           +N++I    +  +  +AL  +  M Q+G+  D+ T   ++ A    S    G  +H  + 
Sbjct: 163 YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVV 222

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
           K G++ + ++ + L+ +YA    +  A ++F+    RD+VSWN+++ G   H     A  
Sbjct: 223 KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARM 282

Query: 150 LFEQM 154
           +F++M
Sbjct: 283 VFDRM 287


>gi|413934541|gb|AFW69092.1| hypothetical protein ZEAMMB73_188982 [Zea mays]
          Length = 630

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 177/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C   +D + V+  ++  N +SW A++ G+C  G  E+ L  F +M     D D++++
Sbjct: 291 YAKCGMMVDARKVFDRMKAPNAVSWCALLGGYCQTGKHEKVLSLFRQMHMQEQDDDWYSL 350

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ +   +S  K GK++H    ++    +V V++ LV +YA CGA++ A +VF     
Sbjct: 351 GTLLRSCAGLSAVKLGKEIHCRSMRMRGCGDVIVESALVDLYAKCGAVDYAYRVFKMSSV 410

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++++WN+++ GCA +G+   A+ LF +M +  +KPD  +F+ VL AC H G +++G  Y
Sbjct: 411 RNMITWNAMICGCAQNGHGERAISLFNEMVRGGVKPDYISFIGVLFACSHTGMVEEGRNY 470

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  + PP  EHY  IV LL R   L EAE  +N        S++ A+L AC  H
Sbjct: 471 FNSMSKDYGI-PPGIEHYNCIVDLLSRVELLEEAEDLVNKSQFRDDSSLWAAILGACATH 529

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++AVR AK++++L P     YVLL NV +    W+DA  +R LM +R ++K+PG SW
Sbjct: 530 TNPDVAVRVAKKMMELEPQYHLSYVLLENVYRTIGHWEDAVKVRKLMKSRKVKKEPGTSW 589

Query: 306 V 306
           +
Sbjct: 590 I 590



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 16/254 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFT 64
           Y    +  D +  +  +R  + I + ++I+ F      ++AL+ F  M R  G+  D  T
Sbjct: 189 YGHSGAPGDARKAFEEMRAPDGICYTSLISAFVRNDWFDEALRWFQAMLRTDGVWPDGCT 248

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++ A+G +   ++G++ HA +   G   NV V++  + MYA CG + DA KVF  M 
Sbjct: 249 FGSMMSALGNMKRARQGREAHAQVVTRGLCGNVIVESSTLDMYAKCGMMVDARKVFDRMK 308

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             + VSW +LL G    G   + + LF QM   E   D  +   +L +C     +  G +
Sbjct: 309 APNAVSWCALLGGYCQTGKHEKVLSLFRQMHMQEQDDDWYSLGTLLRSCAGLSAVKLGKE 368

Query: 185 -YFYLMR----NDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKAL 238
            +   MR     D  +E       +A+V L  + G ++ A   F  S  RN     + A+
Sbjct: 369 IHCRSMRMRGCGDVIVE-------SALVDLYAKCGAVDYAYRVFKMSSVRN--MITWNAM 419

Query: 239 LSACQVHGNREIAV 252
           +  C  +G+ E A+
Sbjct: 420 ICGCAQNGHGERAI 433



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 7/161 (4%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID------YFTITSIVGAI 72
           +  +  R+ ++ ++++A F   G   +AL     M   G   D         +++   A 
Sbjct: 95  FDDLPRRDVVAHSSVLAAFLRAGLPRRALLQLRTMASGGYGADDDVAPSAHALSASAKAC 154

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
            V+   + G  +H      GY  +  V + LV MY   GA  DA K F  M   D + + 
Sbjct: 155 AVLHDLRAGACVHGTTVVRGYGDDGVVLSALVDMYGHSGAPGDARKAFEEMRAPDGICYT 214

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSA 172
           SL+     + +  EA++ F+ M +T+ + PDG TF  ++SA
Sbjct: 215 SLISAFVRNDWFDEALRWFQAMLRTDGVWPDGCTFGSMMSA 255


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 107/291 (36%), Positives = 177/291 (60%), Gaps = 2/291 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI- 75
            V+S +  ++ ++W+A++AG+   G  E A+K F E+ + GI  + FT +SI+       
Sbjct: 53  KVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATN 112

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +   +GKQ H    K   DS++ V + L+ MYA  G I  A +VF    E+DLVSWNS++
Sbjct: 113 ASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMI 172

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG + +A+ +F++M+K ++K DG TF+ V +AC HAG +++G +YF +M  D  +
Sbjct: 173 SGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKI 232

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
            P + EH + +V L  RAG L +A   I +M    G ++++ +L+AC+VH   E+   +A
Sbjct: 233 APTK-EHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAA 291

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++++ + P D A YVLLSN+   +  W +   +R LM  R ++K+PGYSW+
Sbjct: 292 EKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWI 342



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 4/111 (3%)

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT + I+ A+ VIS      ++HA + K  Y+ +  V   L+  Y   G + +A KVFS 
Sbjct: 2   FTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSG 57

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +D++D+V+W+++L G A  G +  A+++F ++ K  IKP+  TF  +L+ C
Sbjct: 58  IDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVC 108



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 73/158 (46%), Gaps = 4/158 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+   R ++ +SWN++I+G+   G   +AL  F EM++  + +D  T   +  A    
Sbjct: 154 EEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHA 213

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNR-LVFMYAICGAINDANKVFSSM-DERDLVSWNS 133
              +EG++   ++ +    +     N  +V +Y+  G +  A KV  +M +      W +
Sbjct: 214 GLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRT 273

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           +L  C  H  +       E++    +KP+ +   V+LS
Sbjct: 274 ILAACRVHKKTELGRLAAEKI--IAMKPEDSAAYVLLS 309


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 112/287 (39%), Positives = 172/287 (59%), Gaps = 1/287 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  RN +SWN++I+GF   G   +AL+ F  MR+     D+ T    + A   ++ 
Sbjct: 406 IFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAA 465

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G+Q H+L+ + GY  + F  N L+  YA CG I +A +VF  M   D+VSWN+L+ G
Sbjct: 466 LHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWNALIDG 525

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G+  EA+ +F +M+  +++PD  TF+ VLSAC HAG ID+G  +F  M  D +L P
Sbjct: 526 YASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFFNSMTKDYALRP 585

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
             AEHY  +V LLGR+G L+EA   I  M   P   V+ A+L AC+VH N E+A  +A++
Sbjct: 586 V-AEHYACMVDLLGRSGRLSEAFEIIQGMQVQPNAGVWGAMLGACRVHKNHELAQLAAEK 644

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           + +L P+  + YVLLSN++     WD+A ++R  +  RG+ K PG +
Sbjct: 645 LYELEPHKTSNYVLLSNITAEAGKWDEAQNMRVFIKERGVHKTPGLA 691



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 27/211 (12%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM------------ 53
           Y R     + + ++  +  RN  +WN +++G+  L   E+A K F+EM            
Sbjct: 239 YCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMI 298

Query: 54  ---------RQAGIDIDYFTITSIVGAIGVISGFKEGKQMH--ALIFKIGYDSNVFVQNR 102
                    ++A   +D     S      ++ G+ + K +    LIF      +    N 
Sbjct: 299 SALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLIFDGLEVRDAVCWNT 358

Query: 103 LVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
           ++  Y  CG +++A  +F  M  +D+VSWN+++ G AH G  R+AV +F +M +     +
Sbjct: 359 MISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQR----N 414

Query: 163 GTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
             ++  V+S     G   + LQ+F LMR DA
Sbjct: 415 TVSWNSVISGFVQNGLCVEALQHFVLMRRDA 445



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 17/213 (7%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +  RN +SWNA+IA   + G    A   F  M       D F+ T +V    
Sbjct: 60  DARRLFDEIPRRNTVSWNAMIAACSDHGRVADARDLFDAMPAR----DGFSWTLMVSCYA 115

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
                   +     + ++  D      N ++  YA  G  +DA  +   M   D++SWNS
Sbjct: 116 RAGELGLARDA---LDRMPGDKCTACYNAMISGYAKHGRFDDAVALLREMPAPDIISWNS 172

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           +L+G   +G    AV+ F++M   ++     ++ ++L     AG +D     F      A
Sbjct: 173 VLVGLTRNGEMVRAVKFFDEMPARDM----VSWNLMLEGYVRAGDVDSAAGLF------A 222

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
            +  P    +  ++    RAG + EA    + +
Sbjct: 223 GVPSPNVVSWVTLLNGYCRAGRIGEARELFDRI 255



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 12/157 (7%)

Query: 97  VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
           V+  N+ +   A  G +  A ++F SM  R+ VS+N++L   A HG   +A +LF+++ +
Sbjct: 11  VYRSNQELTRLARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPR 70

Query: 157 TEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR-AEHYTAIVGLLGRAGF 215
                +  ++  +++AC   G +      F  M       P R    +T +V    RAG 
Sbjct: 71  R----NTVSWNAMIAACSDHGRVADARDLFDAM-------PARDGFSWTLMVSCYARAGE 119

Query: 216 LNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
           L  A   ++ M  +   + Y A++S    HG  + AV
Sbjct: 120 LGLARDALDRMPGDKCTACYNAMISGYAKHGRFDDAV 156



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 38/221 (17%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C   L+ + V+  +   + +SWNA+I G+ + G G +A+  F EM    +  D 
Sbjct: 492 ISAYAKCGRILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFREMEDNDVRPDE 551

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   ++ A             HA +   G+D      N +   Y    A+    + ++ 
Sbjct: 552 VTFVGVLSACS-----------HAGLIDEGFD----FFNSMTKDY----ALRPVAEHYAC 592

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M   DL+            G S    + FE +Q  +++P+   +  +L AC     + K 
Sbjct: 593 M--VDLL------------GRSGRLSEAFEIIQGMQVQPNAGVWGAMLGAC----RVHKN 634

Query: 183 LQYFYLMRNDA-SLEPPRAEHYTAIVGLLGRAGFLNEAESF 222
            +   L       LEP +  +Y  +  +   AG  +EA++ 
Sbjct: 635 HELAQLAAEKLYELEPHKTSNYVLLSNITAEAGKWDEAQNM 675



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 12/139 (8%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           N    N ++   A  G I DA ++F  +  R+ VSWN+++  C+ HG   +A  LF+ M 
Sbjct: 41  NTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAACSDHGRVADARDLFDAMP 100

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF 215
                 DG ++ +++S    AG +         M  D          Y A++    + G 
Sbjct: 101 AR----DGFSWTLMVSCYARAGELGLARDALDRMPGDKC-----TACYNAMISGYAKHGR 151

Query: 216 LNEAESFINSMSRNPGPSV 234
            ++A + +  M   P P +
Sbjct: 152 FDDAVALLREM---PAPDI 167



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 90/198 (45%), Gaps = 20/198 (10%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           +NA+I+G+   G  + A+    EM       D  +  S++  +G+    + G+ + A+ F
Sbjct: 139 YNAMISGYAKHGRFDDAVALLREMPAP----DIISWNSVL--VGLT---RNGEMVRAVKF 189

Query: 90  KIGYDSNVFVQ-NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
                +   V  N ++  Y   G ++ A  +F+ +   ++VSW +LL G    G   EA 
Sbjct: 190 FDEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEAR 249

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208
           +LF+++    +      + V+LS       +++  + F  M +  S+       +T ++ 
Sbjct: 250 ELFDRIPDRNV----AAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSIS------WTTMIS 299

Query: 209 LLGRAGFLNEAESFINSM 226
            L R G L EA+  ++ M
Sbjct: 300 ALVRGGKLQEAKDLLDKM 317


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 113/295 (38%), Positives = 175/295 (59%), Gaps = 7/295 (2%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++ +  RN +SWNA+IAG+   G  E+AL  F  +++  +   ++T  +I+ A   ++ 
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLAD 401

Query: 78  FKEGKQMHALIFKIGY------DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
              G Q H  + K G+      + ++FV N L+ MY  CG + +   VF  M ERD VSW
Sbjct: 402 LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSW 461

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
           N++++G A +GY  EA++LF +M  +  KPD  T + VLSAC HAGF+++G  YF  M  
Sbjct: 462 NAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTR 521

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
           D  + P R +HYT +V LLGRAGFL EA+S I  M   P   ++ +LL+AC+VH N  + 
Sbjct: 522 DFGVAPLR-DHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLG 580

Query: 252 VRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
              A+++ ++  ++   YVLLSN+      W DA ++R LM   G+ K+PG SW+
Sbjct: 581 KYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWI 635



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 116/216 (53%), Gaps = 13/216 (6%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +++ S+  R+Q +WN++++GF      E+AL  F+ M + G  ++ +T  S + A   ++
Sbjct: 107 SLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLN 166

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G Q+H+LI K    S+V++ + LV MY+ CG +NDA +VF  M +R++VSWNSL+ 
Sbjct: 167 DMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLIT 226

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL------MR 190
               +G + EA+++F+ M ++ ++PD  T   V+SAC     I  G +          +R
Sbjct: 227 CYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLR 286

Query: 191 NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           ND  L         A V +  +   + EA    +SM
Sbjct: 287 NDIILS-------NAFVDMYAKCSRIKEARFIFDSM 315



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 32/211 (15%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C +  D Q V+  +  RN +SWN++I  +   G   +ALK F  M ++ ++ D  T+
Sbjct: 197 YSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTL 256

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSSMD 124
            S++ A   +S  K G+++HA + K+    N + + N  V MYA C  I +A  +F SM 
Sbjct: 257 ASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316

Query: 125 -------------------------------ERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                                          ER++VSWN+L+ G   +G + EA+ LF  
Sbjct: 317 IRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCL 376

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++  + P   TF  +L AC     +  G+Q
Sbjct: 377 LKRESVCPTHYTFANILKACADLADLHLGMQ 407



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 40/225 (17%)

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAIND---------------------------- 115
           +HA + K G+ + VF+QNRL+  YA CG++ D                            
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 116 ---ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
              A+ +F SM ERD  +WNS++ G A H    EA+  F  M K     +  TF   LSA
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161

Query: 173 CCHAGFIDKGLQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNP 230
           C     +++G+Q   L+       P  ++ Y  +A+V +  + G +N+A+   + M    
Sbjct: 162 CSGLNDMNRGVQIHSLIAKS----PCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRN 217

Query: 231 GPSVYKALLSACQVHGNREIAVRSAKRVLDLW--PNDPAIYVLLS 273
             S + +L++  + +G    A++  + +L+ W  P++  +  ++S
Sbjct: 218 VVS-WNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVIS 261


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 111/293 (37%), Positives = 180/293 (61%), Gaps = 1/293 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +  R++ISW++++ G+ + G  ++AL+ F +M++       F ++S++ A  
Sbjct: 246 DARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACS 305

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            I    +G+ +HA + +     +  +   L+ MYA CG ++   +VF  M ER++ +WN+
Sbjct: 306 NIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNA 365

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G A HG + +A++LF ++Q+  +KP+G T + VL+AC HAGF+DKGL+ F  MR   
Sbjct: 366 MIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFY 425

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            ++ P  EHY  +V LLGR+G  +EAE  INSM   P  +V+ ALL AC++HGN ++A R
Sbjct: 426 GVD-PELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAER 484

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             K +L+L P +   YVLLSN+      +DD   IR LM NRGI+  PG S V
Sbjct: 485 VGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIV 537



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 134/335 (40%), Gaps = 74/335 (22%)

Query: 11  SSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYFTITS 67
           S+ DF   V+SS+   N   WN +I G        +A+  +  M    ID   + FT  +
Sbjct: 81  SNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV---IDARPNKFTYPT 137

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGY------------------------------DSNV 97
           +  A  V    +EG+Q+H  + K G                               +S+V
Sbjct: 138 LFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDV 197

Query: 98  FVQNRLVFMYAICGAIN-------------------------------DANKVFSSMDER 126
              N ++  Y  CG +                                DA K+F  M ER
Sbjct: 198 VCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSER 257

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQY 185
           D +SW+S++ G    G  +EA+++F+QMQ+ E +P       VL+AC + G ID+G   +
Sbjct: 258 DEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVH 317

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            YL RN   L+   A   TA++ +  + G L+        M        + A++    +H
Sbjct: 318 AYLKRNSIKLD---AVLGTALLDMYAKCGRLDMGWEVFEEMKERE-IFTWNAMIGGLAIH 373

Query: 246 GNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
           G  E A+    ++ +  + PN   +  +L+  + A
Sbjct: 374 GRAEDALELFSKLQEGRMKPNGITLVGVLTACAHA 408



 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYA--ICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           Q+HAL+ + G+  + +V   L+  YA       + A KVFSS+   ++  WN ++ GC  
Sbjct: 51  QLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLE 110

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +    +A+  + +M   + +P+  T+  +  AC  A  + +G Q
Sbjct: 111 NNKLFKAIYFYGRMV-IDARPNKFTYPTLFKACSVAQAVQEGRQ 153


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 183/304 (60%), Gaps = 3/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +++     D  +V+  + T + I WN+II GF      + AL+ F  M++AG   + 
Sbjct: 201 IDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQ 260

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+TS++ A   ++  + G Q H  I K  YD ++ + N LV MY  CG++ DA +VF+ 
Sbjct: 261 ATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQ 318

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ERD+++W++++ G A +GYS+EA++LFE+M+ +  KP+  T + VL AC HAG ++ G
Sbjct: 319 MKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG 378

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF  M+    ++P R EHY  ++ LLG+AG L++A   +N M   P    ++ LL AC
Sbjct: 379 WYYFRSMKKLYGIDPVR-EHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGAC 437

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +V  N  +A  +AK+V+ L P D   Y LLSN+   +  WD   +IRT M +RGI+K+PG
Sbjct: 438 RVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPG 497

Query: 303 YSWV 306
            SW+
Sbjct: 498 CSWI 501



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 107/214 (50%), Gaps = 9/214 (4%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   ++  +  RN ISW  +I+ +      ++AL+    M +  +  + +T +S++ +  
Sbjct: 114 DAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSC- 172

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
             +G  + + +H  I K G +S+VFV++ L+ ++A  G   DA  VF  M   D + WNS
Sbjct: 173 --NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNS 230

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
           ++ G A +  S  A++LF++M++     +  T   VL AC     ++ G+Q + ++++ D
Sbjct: 231 IIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD 290

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
             L         A+V +  + G L +A    N M
Sbjct: 291 QDLILN-----NALVDMYCKCGSLEDALRVFNQM 319



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 87/190 (45%), Gaps = 21/190 (11%)

Query: 45  QALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLV 104
           +A+K    ++  G+  D  T + ++          EG  +   ++  G+   +F+ N L+
Sbjct: 44  RAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLI 103

Query: 105 FMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164
            MY     +NDA+++F  M +R+++SW +++   +     ++A++L   M +  ++P+  
Sbjct: 104 NMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVY 163

Query: 165 TFLVVLSAC--------CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFL 216
           T+  VL +C         H G I +GL+    +R             +A++ +  + G  
Sbjct: 164 TYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVR-------------SALIDVFAKLGEP 210

Query: 217 NEAESFINSM 226
            +A S  + M
Sbjct: 211 EDALSVFDEM 220


>gi|356574078|ref|XP_003555179.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g56570-like [Glycine max]
          Length = 598

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 123/303 (40%), Positives = 178/303 (58%), Gaps = 6/303 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    + + ++S +  ++ I+WN +IAGF  L S E +L  FS M   G+  D F+ 
Sbjct: 259 YCKCHCESEAKRLFSVMTHKDTITWNTLIAGFEALDSRE-SLCIFSRMVSEGLXPDCFSF 317

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS VGA   ++    G+Q+H +I + G D+ + + N L++MYA CG I D+ K+FS M  
Sbjct: 318 TSAVGACANLAVLYCGQQLHGVIVRSGLDNYLEISNALIYMYAKCGNIADSRKIFSKMPC 377

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            +LVSW S++ G   HGY ++AV+LF +M ++ IKPD   F+ VLSAC HAG +D+GL+Y
Sbjct: 378 TNLVSWTSMINGYGDHGYGKDAVELFNEMIRSGIKPDKMVFMAVLSACSHAGLVDEGLRY 437

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM +  ++ P   E Y  +V L GRAG + EA   I +M  NP  S++ ALL AC+VH
Sbjct: 438 FRLMTSYYNITPD-IEIYGCVVDLFGRAGRVKEAYQLIENMPFNPDESIWAALLGACKVH 496

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK--PGY 303
               +A  +A R LD+ P     Y L+SN+  A   WDD      L   RGI+ K   G 
Sbjct: 497 NQPSVAKFAALRALDMKPISAGTYALISNIYAAEGNWDDFASSTKL--RRGIKNKSDSGR 554

Query: 304 SWV 306
           SW+
Sbjct: 555 SWI 557



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 129/298 (43%), Gaps = 34/298 (11%)

Query: 6   YSRCDSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y+ C  S+D  + V+  + T+  + W  +I G+ + G     L+ F +M      +  F+
Sbjct: 157 YATCCDSMDRARMVFDDITTKTDVCWTTLITGYTHRGDAYGGLRVFRQMFLEEGALSLFS 216

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +    A   I     GKQ+HA + K G++SN+ V N ++ MY  C   ++A ++FS M 
Sbjct: 217 FSIAARACASIGSGILGKQVHAEVVKHGFESNLPVMNSILDMYCKCHCESEAKRLFSVMT 276

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC---------- 174
            +D ++WN+L+ G      SRE++ +F +M    + PD  +F   + AC           
Sbjct: 277 HKDTITWNTLIAGFEALD-SRESLCIFSRMVSEGLXPDCFSFTSAVGACANLAVLYCGQQ 335

Query: 175 -HAGFIDKGLQYFYLMRND------------------ASLEPPRAEHYTAIVGLLGRAGF 215
            H   +  GL  +  + N                   + +       +T+++   G  G+
Sbjct: 336 LHGVIVRSGLDNYLEISNALIYMYAKCGNIADSRKIFSKMPCTNLVSWTSMINGYGDHGY 395

Query: 216 LNEAESFINSMSRN---PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYV 270
             +A    N M R+   P   V+ A+LSAC   G  +  +R  + +   +   P I +
Sbjct: 396 GKDAVELFNEMIRSGIKPDKMVFMAVLSACSHAGLVDEGLRYFRLMTSYYNITPDIEI 453



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 81/163 (49%), Gaps = 8/163 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C +  D + ++S +   N +SW ++I G+ + G G+ A++ F+EM ++GI  D 
Sbjct: 356 IYMYAKCGNIADSRKIFSKMPCTNLVSWTSMINGYGDHGYGKDAVELFNEMIRSGIKPDK 415

Query: 63  FTITSIVGAIGVISGFKEGKQMHALI---FKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
               +++ A        EG +   L+   + I  D  ++    +V ++   G + +A ++
Sbjct: 416 MVFMAVLSACSHAGLVDEGLRYFRLMTSYYNITPDIEIY--GCVVDLFGRAGRVKEAYQL 473

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
             +M    D   W +LL  C  H  ++ +V  F  ++  ++KP
Sbjct: 474 IENMPFNPDESIWAALLGACKVH--NQPSVAKFAALRALDMKP 514



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 19/162 (11%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  RN ++W A+I    +  +  +A   F +M + G+                   
Sbjct: 84  LFDKMPQRNVVTWTAMITSNNSRNNHMRAWSVFPQMLRDGV-----------------KA 126

Query: 78  FKEGKQMHALIFKIGYD-SNVFVQNRLVFMYAI-CGAINDANKVFSSMDERDLVSWNSLL 135
              G+ +H+L  KIG   S+V+V N L+ MYA  C +++ A  VF  +  +  V W +L+
Sbjct: 127 LSCGQLVHSLAIKIGVQGSSVYVDNSLMDMYATCCDSMDRARMVFDDITTKTDVCWTTLI 186

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
            G  H G +   +++F QM   E      +F +   AC   G
Sbjct: 187 TGYTHRGDAYGGLRVFRQMFLEEGALSLFSFSIAARACASIG 228


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  226 bits (577), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 122/309 (39%), Positives = 181/309 (58%), Gaps = 6/309 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG--I 58
           I  YS+C S    + ++  +  + R+ ++W  +I G    G   +AL+ FS+M Q    +
Sbjct: 435 IDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFV 494

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDAN 117
             + FTI+  + A   +   + G+Q+HA + +  ++S  +FV N L+ MY+  G ++ A 
Sbjct: 495 MPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAAR 554

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
            VF +M +R+ VSW SL+ G   HG   EA+Q+F +MQK  + PDG TF+VVL AC H+G
Sbjct: 555 VVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSG 614

Query: 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
            +D+G+ YF  M  D  + P  AEHY  +V LL RAG L+EA   I  M   P P+V+ A
Sbjct: 615 MVDQGINYFNGMNKDFGVVPG-AEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVA 673

Query: 238 LLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
           LLSAC+V+ N E+   +A ++L+L   +   Y LLSN+     CW D   IR LM N GI
Sbjct: 674 LLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGI 733

Query: 298 RKKPGYSWV 306
           +K+PG SWV
Sbjct: 734 KKRPGCSWV 742



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 106/202 (52%), Gaps = 8/202 (3%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN +I    +LG  E  L+ +  M++ G   D++T   ++ A G I  F+ G  +HA++F
Sbjct: 113 WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 172

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER---DLVSWNSLLLGCAHHGYSRE 146
             G++ NVFV N LV MY  CGA  +A +VF  M ER   DLVSWNS++      G S  
Sbjct: 173 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 232

Query: 147 AVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYT 204
           A+++FE+M +   I+PD  + + VL AC   G   +G Q + Y +R+    +        
Sbjct: 233 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG---N 289

Query: 205 AIVGLLGRAGFLNEAESFINSM 226
           A+V +  + G + EA      M
Sbjct: 290 AVVDMYAKCGMMEEANKVFERM 311



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 105/184 (57%), Gaps = 9/184 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTR---NQISWNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDID 61
           Y RC +  + + V+  +R R   + +SWN+I+A +   G   +A+K F  M +  GI  D
Sbjct: 190 YGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPD 249

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             ++ +++ A   +  +  GKQ+H    + G   +VFV N +V MYA CG + +ANKVF 
Sbjct: 250 AVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFE 309

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M  +D+VSWN+++ G +  G   +A+ LFE++++ +I+ +  T+  V+     AG+  +
Sbjct: 310 RMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVI-----AGYAQR 364

Query: 182 GLQY 185
           GL +
Sbjct: 365 GLGF 368



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 126/259 (48%), Gaps = 16/259 (6%)

Query: 8   RCDSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT 66
           R D +L  F+ +       N ++W+A+IAG+   G G +AL  F +M   G + +  T+ 
Sbjct: 331 RFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLV 390

Query: 67  SIVGAIGVISGFKEGKQM--HALIFKIGYDSN-----VFVQNRLVFMYAICGAINDANKV 119
           S++           GK+   HA+ + +  D N     + V N L+ MY+ C +   A  +
Sbjct: 391 SLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAM 450

Query: 120 FSSMDERD--LVSWNSLLLGCAHHGYSREAVQLFEQMQKTE--IKPDGTTFLVVLSACCH 175
           F  +  +D  +V+W  L+ G A HG + EA++LF QM + +  + P+  T    L AC  
Sbjct: 451 FDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACAR 510

Query: 176 AGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
            G +  G Q + Y++RN    E         ++ +  ++G ++ A    ++M +  G S 
Sbjct: 511 LGALRFGRQIHAYVLRN--RFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVS- 567

Query: 235 YKALLSACQVHGNREIAVR 253
           + +L++   +HG  E A++
Sbjct: 568 WTSLMTGYGMHGRGEEALQ 586


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 180/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC +  + +  +  +  +N +S+N I+  +    + E+A + F+E+  AG  ++ 
Sbjct: 292 ISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNA 351

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++     I    +G+Q+H+ I K G+ SN+ + N L+ MY+ CG I  A +VF+ 
Sbjct: 352 FTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNE 411

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M + +++SW S++ G A HG++  A++ F +M +  + P+  T++ VLSAC H G I +G
Sbjct: 412 MGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEG 471

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L++F  M+ +  +  PR EHY  +V LLGR+G L EA   +NSM       V +  L AC
Sbjct: 472 LKHFKSMKVEHGI-VPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGAC 530

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN ++   +A+ +L+  P+DPA Y+LLSN+  +   W++  +IR  M  R + K+ G
Sbjct: 531 RVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAG 590

Query: 303 YSWV 306
            SW+
Sbjct: 591 CSWI 594



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 4/176 (2%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  RN ++W  +I  F  LG    A+  F +M  +G   D FT++ +V A   +  
Sbjct: 101 VFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGL 160

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC---GAINDANKVFSSMDERDLVSWNSL 134
              G+Q H L+ K G D +V V   LV MYA C   G+++DA KVF  M   +++SW ++
Sbjct: 161 LSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAI 220

Query: 135 LLGCAHH-GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           + G     G  REA++LF +M + ++KP+  TF  VL AC +   I  G Q + L+
Sbjct: 221 ITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALV 276



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 142/298 (47%), Gaps = 9/298 (3%)

Query: 6   YSRC--DSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGSGE-QALKCFSEMRQAGIDID 61
           Y++C  D S+D  + V+  +   N +SW AII G+   G  + +A++ F EM Q  +  +
Sbjct: 190 YAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPN 249

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           +FT +S++ A   +S    G+Q++AL+ K+   S   V N L+ MY+ CG + +A K F 
Sbjct: 250 HFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFD 309

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + E++LVS+N+++   A    S EA +LF +++      +  TF  +LS     G I K
Sbjct: 310 VLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGK 369

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G Q     R   S          A++ +  R G +  A    N M      S + ++++ 
Sbjct: 370 GEQIH--SRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVIS-WTSMITG 426

Query: 242 CQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
              HG    A+ +  ++L+  + PN+     +LS  S      +     +++    GI
Sbjct: 427 FAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGI 484



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 2/167 (1%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R+ +SW+A+I+ + N     +A+  F +M + G   + +  T +  A         GK +
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 85  HALIFKIGY-DSNVFVQNRLVFMYAIC-GAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
              + K GY +S+V V   L+ M+    G +  A KVF  M +R++V+W  ++      G
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           +SR+AV LF  M  +   PD  T   V+SAC   G +  G Q+  L+
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLV 171


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 180/335 (53%), Gaps = 32/335 (9%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGS-------------------- 42
           I  Y + +   + + ++ ++  RN I+WNAI++G+ N G                     
Sbjct: 335 ITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLT 394

Query: 43  -----------GEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKI 91
                      G++ LK F +MR  G +   F     + A  V+   + G+Q+HA +  +
Sbjct: 395 VMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHL 454

Query: 92  GYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLF 151
           GY+S++ V N ++ MYA CG +  A  VF +M   DLVSWNS++     HG+  +A++LF
Sbjct: 455 GYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELF 514

Query: 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLG 211
           +QM K  + PD  TFL VL+AC HAG ++KG  YF  M     + P   +HY  +V L  
Sbjct: 515 DQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCE-DHYARMVDLFC 573

Query: 212 RAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVL 271
           RAG  + A   I+SM   PG  V++ALL+ C++HGN ++ + +A+++  L P +   YVL
Sbjct: 574 RAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVL 633

Query: 272 LSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           LSN+      W+D   +R LM ++ +RK+P  SW+
Sbjct: 634 LSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWI 668



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 9/199 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y R D     + V+ ++      +WNA+I+G+ + G  ++AL    +MR  GI  D 
Sbjct: 230 ITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDD 289

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN----VFVQNRLVFMYAICGAINDANK 118
            T T+I+ A   +  F+ GKQMHA I K   + N    + V N L+ +Y     +++A K
Sbjct: 290 ITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARK 349

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           +F +M  R++++WN++L G  + G   EA   FE+M    +     T  V++S     GF
Sbjct: 350 IFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL----LTLTVMISGLAQNGF 405

Query: 179 IDKGLQYFYLMRNDASLEP 197
            D+GL+ F  MR D   EP
Sbjct: 406 GDEGLKLFKQMRLDG-FEP 423



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 42/210 (20%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG-KQ 83
           R+ + +NA+I G+ + G G  AL+ F  MR+     D FT TS++ A+ +  G ++   Q
Sbjct: 110 RDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQ 169

Query: 84  MHALIFKIGYDS-NVFVQNRLVFMYA--------ICGAINDANKVFSSMDERDLVS---- 130
           MH  + K G    +  V N L+ +Y          C A+  A K+F  M +RD ++    
Sbjct: 170 MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTM 229

Query: 131 ---------------------------WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG 163
                                      WN+++ G  H G  +EA+ L  +M+   I+ D 
Sbjct: 230 ITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDD 289

Query: 164 TTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
            T+  ++SAC + G    G Q + Y+++N+
Sbjct: 290 ITYTTIISACANVGSFQMGKQMHAYILKNE 319



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 18/132 (13%)

Query: 59  DIDYFTITSIVGAIGVISGFK-EGKQMHALIFKIGYDSNV---------------FVQNR 102
           D   F++   V A  + SGFK  G  ++ L+      SNV                 +  
Sbjct: 25  DPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTT 84

Query: 103 LVFMYAICGAINDANKVF--SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
           L+  Y   G +    ++F  + +  RD V +N+++ G AH+G    A++LF  M++ + +
Sbjct: 85  LITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFR 144

Query: 161 PDGTTFLVVLSA 172
           PD  TF  VLSA
Sbjct: 145 PDDFTFTSVLSA 156


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 185/304 (60%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+  ++C    + + ++  +  RN +SWN++I+G+   G   +AL  F +M++  I    
Sbjct: 198 IMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSE 257

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ A   +   K+G+ +H  I K  ++ NV V   ++ MY  CG+I +A +VF  
Sbjct: 258 FTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEM 317

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              + L SWN+++LG A +G   EA+QLF +++ + ++PD  TF+ VL+AC ++G +DK 
Sbjct: 318 APLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKA 377

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF LM     +E P  +HY+ +V  LGRAG L EAE  I +M  NP   ++ +LLSAC
Sbjct: 378 KEYFSLMSKTYKIE-PSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSAC 436

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + HGN E+A R+AK ++DL  ND   YVLLSN+  A+D +++A + R  M  + I K+PG
Sbjct: 437 RKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEPG 496

Query: 303 YSWV 306
            S +
Sbjct: 497 CSLI 500



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 126/283 (44%), Gaps = 39/283 (13%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFTITSIVGAIGVIS 76
           V++ + + N  SWN II GF    +   A+  F +M   + +     T  S+  A   + 
Sbjct: 80  VFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLG 139

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMY----------------------------- 107
               G Q+H  + K+G   + F++N +++MY                             
Sbjct: 140 LAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIM 199

Query: 108 --AICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
             A CG ++++ K+F  M  R+ VSWNS++ G   +G  REA+ LF QMQ+  IKP   T
Sbjct: 200 GLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFT 259

Query: 166 FLVVLSACCHAGFIDKG-LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
            + +L+A    G + +G   + Y+ +N+  L         +I+ +  + G + EA   + 
Sbjct: 260 MVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVT---ASIIDMYCKCGSIGEAFQ-VF 315

Query: 225 SMSRNPGPSVYKALLSACQVHG--NREIAVRSAKRVLDLWPND 265
            M+   G S +  ++    ++G  N  I + S     +L P+D
Sbjct: 316 EMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDD 358



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 27/157 (17%)

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC--GAINDANKVFSSMDERDLVSWNS 133
           +  K+ +++HA + K G   +    + ++   A    G IN A  VF+ +   +L SWN+
Sbjct: 35  TTMKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNT 94

Query: 134 LLLGCAHHGYSREAVQLF-EQMQKTEIKPDGTTFLVVLSACCHAGF-----------IDK 181
           ++ G +       A+ LF + +  + ++P   T+  V  A    G            I  
Sbjct: 95  IIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKL 154

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218
           GLQ+   +RN              I+ +    GFL+E
Sbjct: 155 GLQFDPFIRN-------------TIIYMYANCGFLSE 178


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 183/304 (60%), Gaps = 3/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +++     D  +V+  + T + I WN+II GF      + AL+ F  M++AG   + 
Sbjct: 201 IDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQ 260

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+TS++ A   ++  + G Q H  I K  YD ++ + N LV MY  CG++ DA +VF+ 
Sbjct: 261 ATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQ 318

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ERD+++W++++ G A +GYS+EA++LFE+M+ +  KP+  T + VL AC HAG ++ G
Sbjct: 319 MKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG 378

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF  M+    ++P R EHY  ++ LLG+AG L++A   +N M   P    ++ LL AC
Sbjct: 379 WYYFRSMKKLYGIDPVR-EHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGAC 437

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +V  N  +A  +AK+V+ L P D   Y LLSN+   +  WD   +IRT M +RGI+K+PG
Sbjct: 438 RVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPG 497

Query: 303 YSWV 306
            SW+
Sbjct: 498 CSWI 501



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 107/214 (50%), Gaps = 9/214 (4%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   ++  +  RN ISW  +I+ +      ++AL+    M +  +  + +T +S++ +  
Sbjct: 114 DAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSC- 172

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
             +G  + + +H  I K G +S+VFV++ L+ ++A  G   DA  VF  M   D + WNS
Sbjct: 173 --NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNS 230

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
           ++ G A +  S  A++LF++M++     +  T   VL AC     ++ G+Q + ++++ D
Sbjct: 231 IIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD 290

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
             L         A+V +  + G L +A    N M
Sbjct: 291 QDLILN-----NALVDMYCKCGSLEDALRVFNQM 319



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 87/190 (45%), Gaps = 21/190 (11%)

Query: 45  QALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLV 104
           +A+K    ++  G+  D  T + ++          EG  +   ++  G+   +F+ N L+
Sbjct: 44  RAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLI 103

Query: 105 FMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164
            MY     +NDA+++F  M +R+++SW +++   +     ++A++L   M +  ++P+  
Sbjct: 104 NMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVY 163

Query: 165 TFLVVLSAC--------CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFL 216
           T+  VL +C         H G I +GL+    +R             +A++ +  + G  
Sbjct: 164 TYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVR-------------SALIDVFAKLGEP 210

Query: 217 NEAESFINSM 226
            +A S  + M
Sbjct: 211 EDALSVFDEM 220


>gi|449433223|ref|XP_004134397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
 gi|449487596|ref|XP_004157705.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 675

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 116/292 (39%), Positives = 178/292 (60%), Gaps = 4/292 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ S++ ++   WNA I G      GE+ LK F+ M + G  +D  T TSI+     +  
Sbjct: 347 IFESMQYKDTTVWNATIFGLGENDKGEEGLKLFTRMIRLGPCLDKATFTSILTICSDLET 406

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G+Q HALI K G++  V V N ++ MYA CG ++ A   FSSM +RD++SWNS++ G
Sbjct: 407 LQLGRQTHALILKEGFNGFVAVSNAMINMYARCGNMDCAFMEFSSMSDRDVISWNSMICG 466

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            AHHG   +A+++FE+M+   I+P+  TF+ VLSAC H G IDKG  YF  M+N+ SL  
Sbjct: 467 FAHHGNGEDALEMFEKMRLANIEPNHITFIGVLSACSHKGLIDKGRYYFNFMKNECSLR- 525

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNP---GPSVYKALLSACQVHGNREIAVRS 254
           P  EHYT +V L GR G ++EA SF+  M        PSV+ ALL AC++H N ++ V +
Sbjct: 526 PLIEHYTCLVDLFGRFGLIDEALSFLAEMKAEEIEVPPSVWGALLGACRIHKNYDVGVIA 585

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            ++VL+  P++  +Y++L+ +       ++A  I   M N G++K+PG SW+
Sbjct: 586 GEKVLEKEPHNAGVYLILAEMYLRNGKRENAEKIFARMKNNGVKKQPGCSWI 637



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 99/237 (41%), Gaps = 52/237 (21%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++  +  RN ++WNA+I G+   G     +  F  M +     D F+  +++G +   
Sbjct: 66  QKLFDGMPQRNIVTWNAMIRGYFLNGRCSDGISLFRRMPER----DVFSYNTVIGGL--- 118

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                                             CG ++ A  +F  M  RD+VSWNS++
Sbjct: 119 --------------------------------MQCGDVDGAKDIFDLMPFRDVVSWNSMI 146

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM-RNDAS 194
            GC  +G   EA+QLF+ M    +     ++ +++    + G +D   +YF  M R D  
Sbjct: 147 AGCIRNGLLEEAIQLFDGMPLKNV----ISWNLIIGGLVNCGKLDSAGEYFGKMSRRDLV 202

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
                   +T ++  L RAG L+EA    N+M       V+ A++     +G  E+A
Sbjct: 203 -------SWTIMISGLCRAGRLDEARGLFNNMPTKDA-RVWNAMMVGYIENGKIEMA 251



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 114/274 (41%), Gaps = 35/274 (12%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN  SWN ++ GF      + A K F EM     D    T  +IV A  + 
Sbjct: 252 EELFGIMPERNFGSWNKLVNGFVGSQRVDDARKLFMEMP----DKCQKTWNNIVLAY-IR 306

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +G     Q HAL+ KI Y  N+     L+  Y   G +  A ++F SM  +D   WN+ +
Sbjct: 307 NGLV--LQTHALLEKIPY-GNIASWTNLIVGYFGIGEVGMAVEIFESMQYKDTTVWNATI 363

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----------CHAGFIDKGLQ 184
            G   +    E ++LF +M +     D  TF  +L+ C            HA  + +G  
Sbjct: 364 FGLGENDKGEEGLKLFTRMIRLGPCLDKATFTSILTICSDLETLQLGRQTHALILKEGFN 423

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  + N             A++ +  R G ++ A    +SMS     S + +++     
Sbjct: 424 GFVAVSN-------------AMINMYARCGNMDCAFMEFSSMSDRDVIS-WNSMICGFAH 469

Query: 245 HGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVS 276
           HGN E A+      R+ ++ PN      +LS  S
Sbjct: 470 HGNGEDALEMFEKMRLANIEPNHITFIGVLSACS 503



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 16/146 (10%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  +N ISWN II G  N G  + A + F +M +   D+  +TI        +ISG
Sbjct: 161 LFDGMPLKNVISWNLIIGGLVNCGKLDSAGEYFGKMSRR--DLVSWTI--------MISG 210

Query: 78  FKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                ++     +F      +  V N ++  Y   G I  A ++F  M ER+  SWN L+
Sbjct: 211 LCRAGRLDEARGLFNNMPTKDARVWNAMMVGYIENGKIEMAEELFGIMPERNFGSWNKLV 270

Query: 136 LGCAHHGYSREAVQLFEQM----QKT 157
            G        +A +LF +M    QKT
Sbjct: 271 NGFVGSQRVDDARKLFMEMPDKCQKT 296



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 10/137 (7%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           +  +  R+ +SW  +I+G C  G  ++A   F+ M          T  + V    ++   
Sbjct: 193 FGKMSRRDLVSWTIMISGLCRAGRLDEARGLFNNMP---------TKDARVWNAMMVGYI 243

Query: 79  KEGK-QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           + GK +M   +F I  + N    N+LV  +     ++DA K+F  M ++   +WN+++L 
Sbjct: 244 ENGKIEMAEELFGIMPERNFGSWNKLVNGFVGSQRVDDARKLFMEMPDKCQKTWNNIVLA 303

Query: 138 CAHHGYSREAVQLFEQM 154
              +G   +   L E++
Sbjct: 304 YIRNGLVLQTHALLEKI 320


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 178/301 (59%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC  + + + ++  +  ++ I+WN +IAGF  L S E +L  FS+M   G   + FT 
Sbjct: 255 YCRCRCASEAKQLFGEMTQKDTITWNTLIAGFETLDSYE-SLCIFSQMVSEGFSPNCFTF 313

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A   ++    G+Q+H  I   G D+N+ + N L+ MYA CG + D++K+FS M  
Sbjct: 314 TSVIAACANLAILYCGQQLHGGIIHRGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRH 373

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            +LVSW S+++G   HG+ +EAV LF +M  + IKPD   F+ VLSAC HAG +D+GL+Y
Sbjct: 374 TNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSHAGLVDEGLRY 433

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM +  ++ P R + Y  +V LL RAG + EA   I +M   P  S++ ALL AC+ +
Sbjct: 434 FRLMTSYYNVAPDR-DIYACVVDLLSRAGRVKEAYELIENMPFKPDESIWVALLGACKKY 492

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
               I   +A +VL++ PN    YVLLSN S A   W D   +R LM +   +K+ G SW
Sbjct: 493 KQPSIQKLAALKVLEMKPNKAGTYVLLSNFSAAEGNWADFASLRKLMRSTKSKKEVGRSW 552

Query: 306 V 306
           +
Sbjct: 553 I 553



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 118/270 (43%), Gaps = 33/270 (12%)

Query: 9   CDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           CDS  + + V+  + T+N +SW  +I G+ +       L+ F +M     ++  F+ +  
Sbjct: 157 CDSMDNARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIA 216

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           V A   I     GKQ+HA +   G++SN+ V N ++ MY  C   ++A ++F  M ++D 
Sbjct: 217 VSACASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDT 276

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-----------HAG 177
           ++WN+L+ G      S E++ +F QM      P+  TF  V++AC            H G
Sbjct: 277 ITWNTLIAGFETLD-SYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGG 335

Query: 178 FIDKGLQYFYLMRND------------------ASLEPPRAEHYTAIVGLLGRAGFLNEA 219
            I +GL     + N                   + +       +T+++   G  G   EA
Sbjct: 336 IIHRGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEA 395

Query: 220 ESFINSM---SRNPGPSVYKALLSACQVHG 246
               N M      P   V+ A+LSAC   G
Sbjct: 396 VDLFNEMVGSGIKPDKIVFMAVLSACSHAG 425



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 90/171 (52%), Gaps = 2/171 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
             ++  +  R+ I+W ++I G+ +     +A   F+ M + G+  + FT+++++ A   +
Sbjct: 61  HTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDGVKPNAFTVSAVLKACKSL 120

Query: 76  SGFKEGKQMHALIFKIGYD-SNVFVQNRLVFMYAI-CGAINDANKVFSSMDERDLVSWNS 133
                GK +H L  KIG   S+++V N L+ MYA  C ++++A  VF  +  ++ VSW +
Sbjct: 121 KALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARLVFEDIGTKNAVSWTT 180

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           L+ G  H   +   +++F QM   E +    +F + +SAC   G  + G Q
Sbjct: 181 LITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACASIGSSNLGKQ 231



 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLG---CAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
           G+  +A+ +F  M  RD+++W S++ G   C HH     A  +F  M +  +KP+  T  
Sbjct: 55  GSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHS---RAWNVFTNMLRDGVKPNAFTVS 111

Query: 168 VVLSAC 173
            VL AC
Sbjct: 112 AVLKAC 117


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 176/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +CD + D  + +  +  +N +SW A++  +      E AL+ F ++   G+  + FT 
Sbjct: 254 YGKCDCARDAHSAFEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTY 313

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              + +   ++  K G  + A   K G+   + V N L+ MY+  G+I+DA +VF SM  
Sbjct: 314 AVALNSCAGLAALKNGNALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPW 373

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWNS+++G AHHG +REA+ +F  M   EI P   TF+ VL AC   G +D+GL Y
Sbjct: 374 RDVVSWNSVIIGYAHHGLAREAMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYY 433

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             +M  +  ++P R EHYT +VGLL RAG L+EAE FI S         +K+LLS+CQV+
Sbjct: 434 LNIMMKEMGIKPGR-EHYTCMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQVY 492

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +  R A+++L L PND   YVLLSN+    + WD    +R LM  RG+RK+PG SW
Sbjct: 493 KNYGLGHRVAEQILQLKPNDVGTYVLLSNMYAKANRWDGVVKVRKLMRERGVRKEPGVSW 552

Query: 306 V 306
           +
Sbjct: 553 I 553



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 84/168 (50%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D   V+ +V   +  ++N++I GF +LG  + +++    M       D+ + 
Sbjct: 153 YCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSY 212

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++G          G Q+HA   K   + NV+V + LV MY  C    DA+  F  + E
Sbjct: 213 VAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPE 272

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +++VSW +++     +    +A+QLF  ++   ++P+  T+ V L++C
Sbjct: 273 KNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSC 320



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 84/171 (49%), Gaps = 3/171 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C      + ++ ++ +RN +S N +++G+ + G    AL   + ++ A   ++ 
Sbjct: 52  IAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYASAGRHSDAL---ALLKAADFSLNE 108

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           + +++ + A   +  +  G+Q H    K G   + +V N ++ MY  C  + DA KVF +
Sbjct: 109 YVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKVFEN 168

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +   D+ ++NS++ G    G    ++++   M     + D  +++ VL  C
Sbjct: 169 VSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHC 219


>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25970
 gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/294 (37%), Positives = 174/294 (59%), Gaps = 2/294 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D  +++ S+++++ ISWN+II GF   G  E A+K FS +R + I +D +  ++++ +  
Sbjct: 360 DALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCS 419

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER-DLVSWN 132
            ++  + G+Q+HAL  K G+ SN FV + L+ MY+ CG I  A K F  +  +   V+WN
Sbjct: 420 DLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWN 479

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           +++LG A HG  + ++ LF QM    +K D  TF  +L+AC H G I +GL+   LM   
Sbjct: 480 AMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPV 539

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
             ++P R EHY A V LLGRAG +N+A+  I SM  NP P V K  L  C+  G  E+A 
Sbjct: 540 YKIQP-RMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMAT 598

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + A  +L++ P D   YV LS++      W++   ++ +M  RG++K PG+SW+
Sbjct: 599 QVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWI 652



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 120/253 (47%), Gaps = 5/253 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I +Y+ C S  D + V+  +  +++ ISWN++IAGF      E A + F +M++  ++ D
Sbjct: 245 ISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETD 304

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA--ICGAINDANKV 119
            +T T ++ A         GK +H ++ K G +      N L+ MY     G + DA  +
Sbjct: 305 IYTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSL 364

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F S+  +DL+SWNS++ G A  G S +AV+ F  ++ +EIK D   F  +L +C     +
Sbjct: 365 FESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATL 424

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
             G Q   L      +        ++++ +  + G +  A      +S       + A++
Sbjct: 425 QLGQQIHALATKSGFVSNEFV--ISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMI 482

Query: 240 SACQVHGNREIAV 252
                HG  ++++
Sbjct: 483 LGYAQHGLGQVSL 495



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 13/192 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFT 64
           Y++C+   D    +  +   N +SWNA+IAGF  +   + A      M  +A + +D  T
Sbjct: 146 YAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGT 205

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM- 123
              ++  +         KQ+HA + K+G    + + N ++  YA CG+++DA +VF  + 
Sbjct: 206 FAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLG 265

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC--------- 174
             +DL+SWNS++ G + H     A +LF QMQ+  ++ D  T+  +LSAC          
Sbjct: 266 GSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGK 325

Query: 175 --HAGFIDKGLQ 184
             H   I KGL+
Sbjct: 326 SLHGMVIKKGLE 337



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ +SWN +I+G+ + G  E A   F+ M+++G D+D ++ + ++  I  +  
Sbjct: 57  LFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKR 116

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F  G+Q+H L+ K GY+ NV+V + LV MYA C  + DA + F  + E + VSWN+L+ G
Sbjct: 117 FDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAG 176

Query: 138 CAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSAC-----------CHAGFIDKGLQY 185
                  + A  L   M+ K  +  D  TF  +L+              HA  +  GLQ+
Sbjct: 177 FVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQH 236



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F++    H    K G  S+++V NR++  Y   G +  AN +F  M +RD VSWN+++ G
Sbjct: 16  FQKLSLTHCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISG 75

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
               G   +A  LF  M+++    DG +F  +L         D G Q
Sbjct: 76  YTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQ 122


>gi|42563517|ref|NP_187185.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546760|sp|Q9MA85.2|PP215_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g05340
 gi|332640702|gb|AEE74223.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 658

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S  D   ++ S    +++S   I+ G    GS E+A++ F  M QAG++ID   +
Sbjct: 301 YSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVV 360

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++G   + +    GKQ+H+L+ K  +  N FV N L+ MY+ CG + D+  VF  M +
Sbjct: 361 SAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPK 420

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWNS++   A HG+   A++L+E+M   E+KP   TFL +L AC H G IDKG + 
Sbjct: 421 RNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGREL 480

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M+    +E PR EHYT I+ +LGRAG L EA+SFI+S+   P   +++ALL AC  H
Sbjct: 481 LNEMKEVHGIE-PRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSFH 539

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E+   +A+++    P+  + ++L++N+  +   W +       M   G+ K+ G S 
Sbjct: 540 GDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGISS 599

Query: 306 V 306
           +
Sbjct: 600 I 600



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 134/278 (48%), Gaps = 9/278 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y +C  S+  + V+  +  RN I+  A+I+G       E  L+ FS MR+  +  + 
Sbjct: 197 ITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNS 256

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S + A        EG+Q+HAL++K G +S + +++ L+ MY+ CG+I DA  +F S
Sbjct: 257 VTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFES 316

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             E D VS   +L+G A +G   EA+Q F +M +  ++ D      V+SA     FID  
Sbjct: 317 TTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDAN----VVSAVLGVSFIDNS 372

Query: 183 LQYFYLMRNDASLEPPRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           L     + +           +    ++ +  + G L ++++    M +    S + ++++
Sbjct: 373 LGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVS-WNSMIA 431

Query: 241 ACQVHGNREIAVRSAKRV--LDLWPNDPAIYVLLSNVS 276
           A   HG+   A++  + +  L++ P D     LL   S
Sbjct: 432 AFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACS 469



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 116/259 (44%), Gaps = 14/259 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C   +D   ++  +  R+ IS N +  GF      E        M  +G   D+ T+
Sbjct: 100 YAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLGSG-GFDHATL 158

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T ++            K +HAL    GYD  + V N+L+  Y  CG       VF  M  
Sbjct: 159 TIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSH 218

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           R++++  +++ G   +    + ++LF  M++  + P+  T+L  L+AC  +  I +G Q 
Sbjct: 219 RNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQI 278

Query: 185 ----YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
               + Y + ++  +E       +A++ +  + G + +A +   S +     S+   L+ 
Sbjct: 279 HALLWKYGIESELCIE-------SALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVG 331

Query: 241 ACQVHGNREIAVRSAKRVL 259
             Q +G+ E A++   R+L
Sbjct: 332 LAQ-NGSEEEAIQFFIRML 349



 Score = 40.4 bits (93), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 97  VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
           + V N L+ +YA CG + DA K+F  M  RD++S N +  G   +  +     L ++M  
Sbjct: 90  LVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLG 149

Query: 157 TEIKPDGTTFLVVLSAC 173
           +    D  T  +VLS C
Sbjct: 150 SG-GFDHATLTIVLSVC 165


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 171/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    + + ++  +  +  +SWNAIIAGF  L   E A   F EM +  +  D FT 
Sbjct: 524 YCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTY 583

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   ++    GKQ+H  I K+   S+V++ + LV MY+ CG + D+  VF     
Sbjct: 584 AIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPN 643

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D V+WN+++ G A HG   EA+  FE+MQ   ++P+  TF+ +L AC H GFIDKGL Y
Sbjct: 644 KDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHY 703

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  +  LE P+ EHY+ ++ ++GR+G ++EA   I  M       +++ LLS C++H
Sbjct: 704 FNAMLTEYGLE-PQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIH 762

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN EIA ++   +L L P D +  +LLSN+      W    ++R +M    ++K+PG SW
Sbjct: 763 GNIEIAEKATNAILQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSW 822

Query: 306 V 306
           +
Sbjct: 823 I 823



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 94/179 (52%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C++  +   ++  +  R+ +SWNA+IA     G+ E+ L  F+ M +  ++ D FT 
Sbjct: 423 YGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTY 482

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A         G ++H  I K G   + FV   L+ MY  CG I +A K+   +++
Sbjct: 483 GSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQ 542

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           + +VSWN+++ G     +S +A   F +M K  +KPD  T+ +VL AC +   +  G Q
Sbjct: 543 QTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQ 601



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 97/179 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D Q +++S+   +   +NAII G      G +AL+ F  + ++G+  +  ++
Sbjct: 322 YAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISL 381

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +    A   I G  +G+Q+H+L  K    SN+ V N ++ MY  C A+++A  +F  M+ 
Sbjct: 382 SGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMER 441

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           RD VSWN+++     +G   E + LF  M +  ++PD  T+  VL AC     ++ G++
Sbjct: 442 RDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGME 500



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 121/249 (48%), Gaps = 13/249 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   ++S +  +N + W+AIIAG          L+ F EM++ GI +     
Sbjct: 221 YAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIY 280

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+  +   +S  K G Q+HA   K  + S++ V    + MYA CG++ DA ++F+S+ +
Sbjct: 281 ASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPK 340

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
             L  +N++++GC  +    EA+Q F+ + K+ +  +  +     SAC        G Q 
Sbjct: 341 HSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQL 400

Query: 186 FYL-----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
             L     +R++  +         +I+ + G+   L+EA    + M R    S + A+++
Sbjct: 401 HSLSVKSTLRSNICVA-------NSILDMYGKCEALSEACCMFDEMERRDAVS-WNAVIA 452

Query: 241 ACQVHGNRE 249
           A + +GN E
Sbjct: 453 AHEQNGNEE 461



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 111/220 (50%), Gaps = 6/220 (2%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           R+ +SWN++++GF   G   +++  F +M R   +  D  T   ++ A  V+     G Q
Sbjct: 138 RDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQ 197

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +H LI ++G+  +V   + L+ MYA C  ++D+ K+FS +  ++ V W++++ GC  +  
Sbjct: 198 VHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDE 257

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEH 202
               ++LF++MQK  I    + +  V  +C     +  G Q + + ++ D   +      
Sbjct: 258 HILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVG-- 315

Query: 203 YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            TA + +  + G L +A+   NS+ ++     Y A++  C
Sbjct: 316 -TATLDMYAKCGSLADAQRIFNSLPKH-SLQCYNAIIVGC 353



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 40/172 (23%)

Query: 34  IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY 93
           I  FC + + +Q         Q  +     T + I+      +  K GKQ HA +   G+
Sbjct: 23  IFTFCTISTLQQ--------NQTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGF 74

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL------------------------- 128
             +V++ N L+ MY  C  +N A KVF  M +RD+                         
Sbjct: 75  IPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYD 134

Query: 129 ------VSWNSLLLGCAHHGYSREAVQLFEQMQKT-EIKPDGTTFLVVLSAC 173
                 VSWNS+L G   +G  R+++ +F  M ++ E+  D TTF VVL AC
Sbjct: 135 TPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKAC 186


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 177/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C +    ++++  +  +N +SWNA+IA +    +G  A+K F  M+   +D DY
Sbjct: 271 IALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDY 330

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ A   +     G+ MH L+ + G + NV + N L+ MYA CG I+ A +VF  
Sbjct: 331 ITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFER 390

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  R +VSW S++  CA HG+  +A++LF +M+   +KP+  TF  V +AC H+G +++G
Sbjct: 391 LPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEG 450

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            ++F  M  D S+ P   EH   +V LLGRAG L EA  FI+ M   P  SV+ ALL +C
Sbjct: 451 RKHFESMMRDYSIMPG-VEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSC 509

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N E+A   A+++  L P     YVL+SN+      W+DA  +R LM  R ++K PG
Sbjct: 510 RIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPG 569

Query: 303 YSWV 306
           +S V
Sbjct: 570 HSLV 573



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 3   ILTYSRCDSSLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I+T      ++D+ + ++  +  R+   WN +I G+ + G  E+AL  +S M  AG+  D
Sbjct: 68  IITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPD 127

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +T   +V +  V+S  +EGK++H  I K G+DS+VFVQ+ LV MY+  G       VF 
Sbjct: 128 NYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFG 187

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M  R++VSW +++ G   + Y +E + +F +M  +  +P+  T + VL AC    F++ 
Sbjct: 188 EMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNL 247

Query: 182 G-LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           G L + Y ++       P      A++ L G+ G +  A S  + M
Sbjct: 248 GKLIHGYGIKLGVD---PDVSLTNALIALYGKCGNVETARSLFDGM 290



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 128/260 (49%), Gaps = 7/260 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+   +L  + V+  +  RN +SW A+IAG+      ++ L  F EM  +G   + 
Sbjct: 170 VAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNA 229

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ A   +     GK +H    K+G D +V + N L+ +Y  CG +  A  +F  
Sbjct: 230 VTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDG 289

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  ++LVSWN+++     +     AV+LF +MQ  ++  D  T + V+SAC   G ++ G
Sbjct: 290 MVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTG 349

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALLS 240
            ++ + +     LE        A++ +  + G ++ A        R P  SV  + +++ 
Sbjct: 350 -RWMHELVKRKGLE-INVSITNALIDMYAKCGNIDLAREVFE---RLPCRSVVSWTSMIG 404

Query: 241 ACQVHGNREIAVRSAKRVLD 260
           AC  HG+ E A++   R+ D
Sbjct: 405 ACASHGHGEDALKLFSRMKD 424


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/290 (36%), Positives = 172/290 (59%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +V+S + TR+ + WN+II+     G    AL    EM  + ++++  T+ S + A   ++
Sbjct: 312 SVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLA 371

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             ++GK++H  I + G D+  F+ N L+ MY  CG+I  + ++F  M +RDLVSWN ++ 
Sbjct: 372 ALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMIS 431

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
               HG+  +AV LF+Q +   +KP+  TF  +LSAC H+G I++G +YF +M+ + +++
Sbjct: 432 VYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMD 491

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
           P   E Y  +V LL RAG  NE   FI  M   P  +V+ +LL AC++H N ++A  +A+
Sbjct: 492 PA-VEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAAR 550

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            + +L P     YVL++N+  A   W+DA  IR LM  RG+ K PG SW+
Sbjct: 551 YLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWI 600



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 86/169 (50%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +  RN  SW AI+  +C LG  E+ +K F  M   G+  D+F    +  A  
Sbjct: 63  DARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACS 122

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +  ++ GK ++  +  IG++ N  V+  ++ M+  CG ++ A + F  ++ +D+  WN 
Sbjct: 123 ELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNI 182

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++ G    G  ++A+ +F +M    +KP+  T    +SAC +   +  G
Sbjct: 183 MVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHG 231



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           +  +  ++   WN +++G+ + G  ++AL  F +M   G+  +  TI S V A   +S  
Sbjct: 169 FEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLL 228

Query: 79  KEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL-- 135
           + G+++H    K+   DS++ V N LV  YA C ++  A + F  + + DLVSWN++L  
Sbjct: 229 RHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAV 288

Query: 136 LGCAHHGYSREAVQLFEQMQK-----TEIKP-DGTTFLVVLSACCHAG 177
            G   +G  + A++ F++M       +E+   D   +  ++SAC  +G
Sbjct: 289 TGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSG 336



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 53/107 (49%)

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
           SI+     +   + G Q+HA +   G D   F+ +RL+ +Y   G + DA ++F  M ER
Sbjct: 15  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 74

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           ++ SW +++      G   E ++LF  M    ++PD   F  V  AC
Sbjct: 75  NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKAC 121



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 7/197 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC S    + ++  +  R+ +SWN +I+ +   G G  A+  F + R  G+  ++ T 
Sbjct: 402 YGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITF 461

Query: 66  TSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           T+++ A       +EG K    +  +   D  V     +V + +  G  N+  +    M 
Sbjct: 462 TNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMP 521

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV--VLSACCHAGFIDK 181
            E +   W SLL  C  H     A      + + E +  G   L+  + SA   AG  + 
Sbjct: 522 FEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSA---AGRWED 578

Query: 182 GLQYFYLMRNDASLEPP 198
             +   LM+     +PP
Sbjct: 579 AAKIRCLMKERGVTKPP 595


>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Vitis vinifera]
          Length = 729

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/290 (40%), Positives = 173/290 (59%), Gaps = 2/290 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V++++ + N ISWN II+GF   G   Q L+ F E+  + +  + +T++ ++     IS 
Sbjct: 439 VFNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVLSICASISA 498

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + GKQ+H  I + G  S   + N L+ MYA CG ++ + ++F+ M+ RD+VSWN+++  
Sbjct: 499 LRHGKQIHGYILRSGVFSVTSLGNALITMYAKCGDLDWSLRIFNVMNGRDIVSWNAMISA 558

Query: 138 CAHHGYSREAVQLFEQMQKT-EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
            A HG  +EAV  F+ MQ +  +KPD  TF  VLSAC HAG +D G + F  M ND   E
Sbjct: 559 YAQHGKGKEAVHFFKAMQDSGGVKPDQATFTAVLSACSHAGLVDDGTRIFNSMVNDYGFE 618

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
           P  A+H + IV LLGRAG+L EAE  INS       S++  L SAC  HGN  +    A 
Sbjct: 619 PG-ADHLSCIVDLLGRAGYLEEAERLINSKHLKIVSSIWWTLFSACAAHGNLRLGRIVAG 677

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +L++  NDPA+YVLLSN+  A   W++A + R LM    + K+PG SW+
Sbjct: 678 FLLEIEQNDPAVYVLLSNIYAAAGQWEEAANTRDLMQKTRVAKQPGCSWI 727



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 140/293 (47%), Gaps = 12/293 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C +      V+  +  ++ ISWN II  +        A+  F +M++AGI+ D FTI
Sbjct: 329 YSSCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTI 388

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +       +  K   AL+ K G +S + V N LV  ++  G I  A +VF++M  
Sbjct: 389 GSLLASS---ESLEIVKMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNMSS 445

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            +L+SWN+++ G   +G++ + ++ F ++  + +KP+  T  +VLS C     +  G Q 
Sbjct: 446 PNLISWNTIISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVLSICASISALRHGKQI 505

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + Y++R+             A++ +  + G L+ +    N M+     S + A++SA   
Sbjct: 506 HGYILRSGVFSVTSLG---NALITMYAKCGDLDWSLRIFNVMNGRDIVS-WNAMISAYAQ 561

Query: 245 HGNREIAVRSAKRVLD---LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294
           HG  + AV   K + D   + P+      +LS  S A    DD   I   M N
Sbjct: 562 HGKGKEAVHFFKAMQDSGGVKPDQATFTAVLSACSHA-GLVDDGTRIFNSMVN 613



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 128/261 (49%), Gaps = 13/261 (4%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F+   S+V   + I++N +I G  ++G  E+AL  F EM++A +     T  S++ +   
Sbjct: 242 FEEAESTVH--DDITFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSC-- 297

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
            S  +   Q+HA   K+G+++   V N  + MY+ CG ++  + VF  ++E+DL+SWN +
Sbjct: 298 -SSARVSHQVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISWNII 356

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           ++  A   + R A+  F QMQ+  I+PD  T   +L++      +    + F  + +   
Sbjct: 357 IMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLLASSESLEIV----KMFQALVSKNG 412

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           L   + E   A+V    + G + +A    N+MS +P    +  ++S    +G     +  
Sbjct: 413 LN-SKIEVSNALVSAFSKHGQIEQAYQVFNNMS-SPNLISWNTIISGFLFNGFTLQGLEQ 470

Query: 255 AKRVL--DLWPNDPAIYVLLS 273
              +L   L PN   + ++LS
Sbjct: 471 FYELLMSTLKPNAYTLSIVLS 491



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 3/151 (1%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           + WNAII G       E AL  F EM Q G+  D +T  S++ ++  +     G+++H L
Sbjct: 151 VVWNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVL-SLCSLELLDFGREVHTL 209

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDLVSWNSLLLGCAHHGYSR 145
           + K G+     V N L+ MY   G + DA +VF   +    D +++N ++ G A  G   
Sbjct: 210 VIKTGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDE 269

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
           EA+ +F++MQ+  ++P   TF+ V+S+C  A
Sbjct: 270 EALIMFKEMQEACLRPTELTFVSVMSSCSSA 300



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 81/195 (41%), Gaps = 34/195 (17%)

Query: 13  LDFQNVYSSVRTRNQ--ISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIV 69
           +++ N+  + +   +  I  N ++A          +++ F ++  +  +  D+FT++S +
Sbjct: 1   MEYINIVKTTKNAAEQLIKINQLLAELTRSHHNSASVQLFVQIHSSNYLKPDHFTLSSTL 60

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
            A   +     G Q+HA   + G  +   V N L+  YA    +    +VF+ ++  D+ 
Sbjct: 61  TACANLRYAASGNQLHAYSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQRVFNEIENPDVY 120

Query: 130 SWNSLL-------------------------------LGCAHHGYSREAVQLFEQMQKTE 158
           SW +LL                                GCA + ++  A+ LF +M +  
Sbjct: 121 SWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREMHQLG 180

Query: 159 IKPDGTTFLVVLSAC 173
           ++ D  TF  VLS C
Sbjct: 181 VRHDKYTFASVLSLC 195



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 76/147 (51%), Gaps = 5/147 (3%)

Query: 3   ILTYSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDI 60
           I  Y++C   LD+   +++ +  R+ +SWNA+I+ +   G G++A+  F  M+ + G+  
Sbjct: 525 ITMYAKC-GDLDWSLRIFNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGGVKP 583

Query: 61  DYFTITSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           D  T T+++ A        +G ++ ++++   G++      + +V +    G + +A ++
Sbjct: 584 DQATFTAVLSACSHAGLVDDGTRIFNSMVNDYGFEPGADHLSCIVDLLGRAGYLEEAERL 643

Query: 120 FSSMDERDLVS-WNSLLLGCAHHGYSR 145
            +S   + + S W +L   CA HG  R
Sbjct: 644 INSKHLKIVSSIWWTLFSACAAHGNLR 670


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 176/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S    Q ++  +  +  ISWNA+++G+   G     L+ +  M   G+  D 
Sbjct: 185 ITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDP 244

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+  ++ +   +     G ++   +   G+ SN F+ N L+ MYA CG +  A  VF  
Sbjct: 245 VTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDG 304

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER LVSW +++ G   HG+   AVQLF++M ++ I+PDGT F+ VLSAC HAG  D+G
Sbjct: 305 MPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQG 364

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+YF +M+ +  LE P  EHY+ +V LLGRAG L EA++ I SM   P  +V+ ALL AC
Sbjct: 365 LEYFKMMKRNYQLE-PGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGAC 423

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N E+A  + +RV++L P +   YVLLSN+    +       IR +M  + ++K PG
Sbjct: 424 KIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPG 483

Query: 303 YSWV 306
            S+V
Sbjct: 484 CSYV 487



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 136/277 (49%), Gaps = 7/277 (2%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           + +NA+++G+ +      A+  F +M + G+ ++  T+  ++ A       + G  +H  
Sbjct: 109 VCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCS 168

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
             K G+DS+V V N  + MY  CG++N A K+F  M  + L+SWN+++ G A +G +   
Sbjct: 169 TLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNV 228

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           ++L+  M    + PD  T + VLS+C + G    G +  + M+       P   +  A++
Sbjct: 229 LELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNN--ALI 286

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL--DLWPND 265
            +  R G L +A++  + M      S + A++    +HG+ EIAV+  K ++   + P+ 
Sbjct: 287 NMYARCGNLTKAQAVFDGMPERTLVS-WTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDG 345

Query: 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            A   +LS  S A     D G     M  R  + +PG
Sbjct: 346 TAFVCVLSACSHAG--LTDQGLEYFKMMKRNYQLEPG 380



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 2/146 (1%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN  +          QAL  + +M + G   + FT    + +   +S    G Q H  I 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVF-SSMDERDL-VSWNSLLLGCAHHGYSREA 147
           K+G     FVQ  L+ MY     +++A KVF  +   R L V +N+L+ G   +    +A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSAC 173
           V LF QM +  +  +  T L ++ AC
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPAC 153


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 181/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+R     D +  +  +  +N IS+N +I  +    + E+AL+ F+E+   G+    
Sbjct: 418 ISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASA 477

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++     I    +G+Q+HA + K G   N  V N L+ MY+ CG I  A +VF  
Sbjct: 478 FTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFED 537

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M++R+++SW S++ G A HG++ +A++LF +M +  ++P+  T++ VLSAC H G +++G
Sbjct: 538 MEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEG 597

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            ++F  M  +  +  PR EHY  +V +LGR+G L+EA  FINSM       V++  L AC
Sbjct: 598 WKHFKSMYTEHGV-IPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGAC 656

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN E+   +AK +++  P+DPA Y+LLSN+  +T  WD+  +IR  M  + + K+ G
Sbjct: 657 RVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAG 716

Query: 303 YSWV 306
            SWV
Sbjct: 717 CSWV 720



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 121/273 (44%), Gaps = 36/273 (13%)

Query: 6   YSRC--DSSL-DFQNVYSSVRTRNQISWNAIIAGFCNLGS-GEQALKCFSEMRQAGIDID 61
           Y++C  D S+   + ++  +   N  SW A+I G+   G   E+AL  F  M    +  +
Sbjct: 316 YAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPN 375

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           +FT +S + A   ++  + G+Q+     K+G+ S   V N L+ MYA  G I+DA K F 
Sbjct: 376 HFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFD 435

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + E++L+S+N+++   A +  S EA++LF +++   +     TF  +LS     G I K
Sbjct: 436 ILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGK 495

Query: 182 GLQYFY------LMRNDA-----------------------SLEPPRAEHYTAIVGLLGR 212
           G Q         L  N +                        +E      +T+I+    +
Sbjct: 496 GEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAK 555

Query: 213 AGFLNEAESFINSMSRN---PGPSVYKALLSAC 242
            GF  +A    + M      P    Y A+LSAC
Sbjct: 556 HGFATQALELFHKMLEEGVRPNLVTYIAVLSAC 588



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  RN ++W  +I      G   +A+  F EM  +G + D FT++ ++ A   +  
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMEL 286

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC---GAINDANKVFSSMDERDLVSWNSL 134
              G+Q+H+   + G   +  V   L+ MYA C   G++  A K+F  + + ++ SW ++
Sbjct: 287 LLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAM 346

Query: 135 LLGCAHH-GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
           + G     GY  EA+ LF  M  T + P+  TF   L AC +   +  G Q F
Sbjct: 347 ITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 3/185 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSV-RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I  YS+C       +++  +  +R+ ISW+A+++ F N   G +AL  F +M + G   +
Sbjct: 108 ISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPN 167

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGY-DSNVFVQNRLVFMYAIC-GAINDANKV 119
            +   +   A         G  +   + K GY  S+V V   L+ M+    G +  A KV
Sbjct: 168 EYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKV 227

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M ER+ V+W  ++      GY+ EA+ LF +M  +  +PD  T   V+SAC +   +
Sbjct: 228 FEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELL 287

Query: 180 DKGLQ 184
             G Q
Sbjct: 288 LLGQQ 292



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 1/149 (0%)

Query: 39  NLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVF 98
           N G   +A+     M   G   D  T +  +        F  G  +H  + +     +  
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 99  VQNRLVFMYAICGAINDANKVFSSM-DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157
             N L+ +Y+ CG    A  +F  M   RDL+SW++++   A++     A+  F  M + 
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 158 EIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
              P+   F     AC  A F+  G   F
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIF 191


>gi|9279602|dbj|BAB01060.1| unnamed protein product [Arabidopsis thaliana]
          Length = 598

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 179/306 (58%), Gaps = 3/306 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I +Y+ C S  D + V+  +  +++ ISWN++IAGF   G  E A+K FS +R + I +D
Sbjct: 245 ISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFAQKGLSEDAVKFFSYLRSSEIKVD 304

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +  ++++ +   ++  + G+Q+HAL  K G+ SN FV + L+ MY+ CG I  A K F 
Sbjct: 305 DYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQ 364

Query: 122 SMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            +  +   V+WN+++LG A HG  + ++ LF QM    +K D  TF  +L+AC H G I 
Sbjct: 365 QISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQ 424

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +GL+   LM     ++P R EHY A V LLGRAG +N+A+  I SM  NP P V K  L 
Sbjct: 425 EGLELLNLMEPVYKIQP-RMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKTFLG 483

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
            C+  G  E+A + A  +L++ P D   YV LS++      W++   ++ +M  RG++K 
Sbjct: 484 VCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGVKKV 543

Query: 301 PGYSWV 306
           PG+SW+
Sbjct: 544 PGWSWI 549



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 116/249 (46%), Gaps = 4/249 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFT 64
           Y++C+   D    +  +   N +SWNA+IAGF  +   + A      M  +A + +D  T
Sbjct: 146 YAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGT 205

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM- 123
              ++  +         KQ+HA + K+G    + + N ++  YA CG+++DA +VF  + 
Sbjct: 206 FAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLG 265

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             +DL+SWNS++ G A  G S +AV+ F  ++ +EIK D   F  +L +C     +  G 
Sbjct: 266 GSKDLISWNSMIAGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQ 325

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           Q   L      +        ++++ +  + G +  A      +S       + A++    
Sbjct: 326 QIHALATKSGFVSNEFV--ISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYA 383

Query: 244 VHGNREIAV 252
            HG  ++++
Sbjct: 384 QHGLGQVSL 392



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ +SWN +I+G+ + G  E A   F+ M+++G D+D ++ + ++  I  +  
Sbjct: 57  LFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKR 116

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F  G+Q+H L+ K GY+ NV+V + LV MYA C  + DA + F  + E + VSWN+L+ G
Sbjct: 117 FDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAG 176

Query: 138 CAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSAC-----------CHAGFIDKGLQY 185
                  + A  L   M+ K  +  D  TF  +L+              HA  +  GLQ+
Sbjct: 177 FVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQH 236



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F++    H    K G  S+++V NR++  Y   G +  AN +F  M +RD VSWN+++ G
Sbjct: 16  FQKLSLTHCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISG 75

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
               G   +A  LF  M+++    DG +F  +L         D G Q
Sbjct: 76  YTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQ 122


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/309 (39%), Positives = 181/309 (58%), Gaps = 6/309 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG--I 58
           I  YS+C S    + ++  +  + R+ ++W  +I G    G   +AL+ FS+M Q    +
Sbjct: 416 IDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFV 475

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDAN 117
             + FTI+  + A   +   + G+Q+HA + +  ++S  +FV N L+ MY+  G ++ A 
Sbjct: 476 MPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAAR 535

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
            VF +M +R+ VSW SL+ G   HG   EA+Q+F +MQK  + PDG TF+VVL AC H+G
Sbjct: 536 VVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSG 595

Query: 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
            +D+G+ YF  M  D  + P  AEHY  +V LL RAG L+EA   I  M   P P+V+ A
Sbjct: 596 MVDQGINYFNGMNKDFGVVPG-AEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVA 654

Query: 238 LLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
           LLSAC+V+ N E+   +A ++L+L   +   Y LLSN+     CW D   IR LM N GI
Sbjct: 655 LLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGI 714

Query: 298 RKKPGYSWV 306
           +K+PG SWV
Sbjct: 715 KKRPGCSWV 723



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 106/202 (52%), Gaps = 8/202 (3%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN +I    +LG  E  L+ +  M++ G   D++T   ++ A G I  F+ G  +HA++F
Sbjct: 94  WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 153

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER---DLVSWNSLLLGCAHHGYSRE 146
             G++ NVFV N LV MY  CGA  +A +VF  M ER   DLVSWNS++      G S  
Sbjct: 154 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 213

Query: 147 AVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYT 204
           A+++FE+M +   I+PD  + + VL AC   G   +G Q + Y +R+    +        
Sbjct: 214 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG---N 270

Query: 205 AIVGLLGRAGFLNEAESFINSM 226
           A+V +  + G + EA      M
Sbjct: 271 AVVDMYAKCGMMEEANKVFERM 292



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 105/189 (55%), Gaps = 4/189 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTR---NQISWNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDID 61
           Y RC +  + + V+  +R R   + +SWN+I+A +   G   +A+K F  M +  GI  D
Sbjct: 171 YGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPD 230

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             ++ +++ A   +  +  GKQ+H    + G   +VFV N +V MYA CG + +ANKVF 
Sbjct: 231 AVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFE 290

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M  +D+VSWN+++ G +  G   +A+ LFE++++ +I+ +  T+  V++     G   +
Sbjct: 291 RMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFE 350

Query: 182 GLQYFYLMR 190
            L  F  MR
Sbjct: 351 ALDVFRQMR 359



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 128/259 (49%), Gaps = 16/259 (6%)

Query: 8   RCDSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT 66
           R D +L  F+ +       N ++W+A+IAG+   G G +AL  F +MR  G + +  T+ 
Sbjct: 312 RFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLV 371

Query: 67  SIVGAIGVISGFKEGKQM--HALIFKIGYDSN-----VFVQNRLVFMYAICGAINDANKV 119
           S++    +      GK+   HA+ + +  D N     + V N L+ MY+ C +   A  +
Sbjct: 372 SLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAM 431

Query: 120 FSSMDERD--LVSWNSLLLGCAHHGYSREAVQLFEQMQKTE--IKPDGTTFLVVLSACCH 175
           F  +  +D  +V+W  L+ G A HG + EA++LF QM + +  + P+  T    L AC  
Sbjct: 432 FDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACAR 491

Query: 176 AGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
            G +  G Q + Y++RN    E         ++ +  ++G ++ A    ++M +  G S 
Sbjct: 492 LGALRFGRQIHAYVLRN--RFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVS- 548

Query: 235 YKALLSACQVHGNREIAVR 253
           + +L++   +HG  E A++
Sbjct: 549 WTSLMTGYGMHGRGEEALQ 567


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 177/303 (58%), Gaps = 3/303 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C         +  +  R+ ISWN+IIAG    G  +Q L  F  M +  +     + 
Sbjct: 244 YAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSF 303

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD- 124
           +S++ A   ++    GKQ+HA I ++G+D N F+ + L+ MYA CG I  A  +F+ ++ 
Sbjct: 304 SSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEM 363

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            +RD+VSW ++++GCA HG++ +AV LFE+M    +KP    F+ VL+AC HAG +D+G 
Sbjct: 364 CDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGW 423

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           +YF  M+ D  + P   EHY A+  LLGRAG L EA  FI++M   P  SV+  LL+AC+
Sbjct: 424 KYFNSMQRDFGVAPG-LEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACR 482

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
            H N E+A +   ++L + P +   +V++SN+  A   W DA  +R  M   G++K P  
Sbjct: 483 AHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPAC 542

Query: 304 SWV 306
           SW+
Sbjct: 543 SWI 545



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 121/242 (50%), Gaps = 11/242 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R+ +SWN +IAG    G  E+AL    EM +  +  D FT++SI+      
Sbjct: 153 RKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEH 212

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +   +GK++H    + G+D +VF+ + L+ MYA C  +  +   F  +  RD +SWNS++
Sbjct: 213 ANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSII 272

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMR---N 191
            GC  +G   + +  F +M K ++KP   +F  V+ AC H   ++ G Q + Y++R   +
Sbjct: 273 AGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFD 332

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV-YKALLSACQVHGNREI 250
           D           ++++ +  + G +  A    N +       V + A++  C +HG+   
Sbjct: 333 DNKFIA------SSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALD 386

Query: 251 AV 252
           AV
Sbjct: 387 AV 388



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 22/192 (11%)

Query: 13  LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           L  Q V ++  T + ++W  II  + + G    +L  F+ +R  GI  D     S++ A 
Sbjct: 27  LHAQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRAS 86

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA----------------------IC 110
            +   F   + +HA + ++G+  +++  N L+ MY+                        
Sbjct: 87  TLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYS 146

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
             I+   K+F  M  RD+VSWN+++ G A +G   EA+ + ++M K  ++PD  T   +L
Sbjct: 147 VKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSIL 206

Query: 171 SACCHAGFIDKG 182
                   + KG
Sbjct: 207 PIFTEHANVTKG 218


>gi|6729044|gb|AAF27040.1|AC009177_30 hypothetical protein [Arabidopsis thaliana]
          Length = 770

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 174/299 (58%), Gaps = 1/299 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S  D   ++ S    +++S   I+ G    GS E+A++ F  M QAG++ID   +
Sbjct: 301 YSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVV 360

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++G   + +    GKQ+H+L+ K  +  N FV N L+ MY+ CG + D+  VF  M +
Sbjct: 361 SAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPK 420

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWNS++   A HG+   A++L+E+M   E+KP   TFL +L AC H G IDKG + 
Sbjct: 421 RNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGREL 480

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M+    +E PR EHYT I+ +LGRAG L EA+SFI+S+   P   +++ALL AC  H
Sbjct: 481 LNEMKEVHGIE-PRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSFH 539

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           G+ E+   +A+++    P+  + ++L++N+  +   W +       M   G+ K+ G S
Sbjct: 540 GDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGIS 598



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 15/281 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y +C  S+  + V+  +  RN I+  A+I+G       E  L+ FS MR+  +  + 
Sbjct: 197 ITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNS 256

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S + A        EG+Q+HAL++K G +S + +++ L+ MY+ CG+I DA  +F S
Sbjct: 257 VTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFES 316

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             E D VS   +L+G A +G   EA+Q F +M +  ++ D      V+SA     FID  
Sbjct: 317 TTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDAN----VVSAVLGVSFIDNS 372

Query: 183 LQYFYLMRNDASLEPPRAEH-----YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
           L    L +   SL   R           ++ +  + G L ++++    M +    S + +
Sbjct: 373 LG---LGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVS-WNS 428

Query: 238 LLSACQVHGNREIAVRSAKRV--LDLWPNDPAIYVLLSNVS 276
           +++A   HG+   A++  + +  L++ P D     LL   S
Sbjct: 429 MIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACS 469



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 116/259 (44%), Gaps = 14/259 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C   +D   ++  +  R+ IS N +  GF      E        M  +G   D+ T+
Sbjct: 100 YAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLGSG-GFDHATL 158

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T ++            K +HAL    GYD  + V N+L+  Y  CG       VF  M  
Sbjct: 159 TIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSH 218

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           R++++  +++ G   +    + ++LF  M++  + P+  T+L  L+AC  +  I +G Q 
Sbjct: 219 RNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQI 278

Query: 185 ----YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
               + Y + ++  +E       +A++ +  + G + +A +   S +     S+   L+ 
Sbjct: 279 HALLWKYGIESELCIE-------SALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVG 331

Query: 241 ACQVHGNREIAVRSAKRVL 259
             Q +G+ E A++   R+L
Sbjct: 332 LAQ-NGSEEEAIQFFIRML 349



 Score = 40.4 bits (93), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 97  VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
           + V N L+ +YA CG + DA K+F  M  RD++S N +  G   +  +     L ++M  
Sbjct: 90  LVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLG 149

Query: 157 TEIKPDGTTFLVVLSAC 173
           +    D  T  +VLS C
Sbjct: 150 SG-GFDHATLTIVLSVC 165


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/291 (36%), Positives = 177/291 (60%), Gaps = 2/291 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI- 75
            V+S +  ++ ++W+A++AG+   G  E A+K F E+ + GI  + FT +SI+       
Sbjct: 449 KVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATN 508

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +   +GKQ H    K   DS++ V + L+ MYA  G I  A +VF    E+DLVSWNS++
Sbjct: 509 ASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMI 568

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG + +A+ +F++M+K ++K DG TF+ V +AC HAG +++G +YF +M  D  +
Sbjct: 569 SGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKI 628

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
            P + EH + +V L  RAG L +A   I +M    G ++++ +L+AC+VH   E+   +A
Sbjct: 629 APTK-EHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAA 687

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++++ + P D A YVLLSN+   +  W +   +R LM  R ++K+PGYSW+
Sbjct: 688 EKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWI 738



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 101/172 (58%), Gaps = 5/172 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           ++ YS+C + LD   ++  +    N +SW A+I+GF      E+A+  FSEM++ G+  +
Sbjct: 337 MVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPN 396

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            FT + I+ A+ VIS      ++HA + K  Y+ +  V   L+  Y   G + +A KVFS
Sbjct: 397 EFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFS 452

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            +D++D+V+W+++L G A  G +  A+++F ++ K  IKP+  TF  +L+ C
Sbjct: 453 GIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVC 504



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 86/171 (50%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           TY +  +  D + V+  ++ RN ++W  +I+G+      ++ L  F  M+  G   + FT
Sbjct: 137 TYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFT 196

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             + +G +        G Q+H ++ K G D  + V N L+ +Y  CG +  A  +F   +
Sbjct: 197 FAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTE 256

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
            + +V+WNS++ G A +G   EA+ +F  M+   ++   ++F  V+  C +
Sbjct: 257 VKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCAN 307



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 82/169 (48%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
            N++     R++ S+ +++ GF   G  ++A + F  + + G+++D    +S++     +
Sbjct: 47  HNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATL 106

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+H    K G+  +V V   LV  Y       D  KVF  M ER++V+W +L+
Sbjct: 107 CDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLI 166

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G A +  + E + LF +MQ    +P+  TF   L      G   +GLQ
Sbjct: 167 SGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ 215



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 88/168 (52%), Gaps = 1/168 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +    + ++     ++ ++WN++I+G+   G   +AL  F  MR   + +   + 
Sbjct: 239 YLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSF 298

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD- 124
            S++     +   +  +Q+H  + K G+  +  ++  L+  Y+ C A+ DA ++F  +  
Sbjct: 299 ASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGC 358

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
             ++VSW +++ G   +    EAV LF +M++  ++P+  T+ V+L+A
Sbjct: 359 VGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA 406



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 73/158 (46%), Gaps = 4/158 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+   R ++ +SWN++I+G+   G   +AL  F EM++  + +D  T   +  A    
Sbjct: 550 EEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHA 609

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNR-LVFMYAICGAINDANKVFSSM-DERDLVSWNS 133
              +EG++   ++ +    +     N  +V +Y+  G +  A KV  +M +      W +
Sbjct: 610 GLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRT 669

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           +L  C  H  +       E++    +KP+ +   V+LS
Sbjct: 670 ILAACRVHKKTELGRLAAEKI--IAMKPEDSAAYVLLS 705


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 181/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C        V+  +  ++ ISW+ II+ +   G  ++A    S MR+ G   + 
Sbjct: 368 ITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNE 427

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F ++S++   G ++  ++GKQ+HA +  IG D    V + ++ MY+ CG++ +A+K+F+ 
Sbjct: 428 FALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNG 487

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M   D++SW +++ G A HGYS+EA+ LFE++    +KPD   F+ VL+AC HAG +D G
Sbjct: 488 MKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLG 547

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF LM N   + P + EHY  ++ LL RAG L+EAE  I SM  +    V+  LL AC
Sbjct: 548 FYYFMLMTNVYRISPSK-EHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRAC 606

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHG+ +    +A+++L L PN    ++ L+N+  A   W +A  IR LM ++G+ K+ G
Sbjct: 607 RVHGDVDRGRWTAEQLLQLDPNSAGTHITLANIYAAKGRWKEAAHIRKLMKSKGVIKERG 666

Query: 303 YSWV 306
           +SWV
Sbjct: 667 WSWV 670



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 130/254 (51%), Gaps = 5/254 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        ++  +R  + +SW  +I+ +  +G  E A++ F  MR++ +  + +T 
Sbjct: 270 YNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTF 329

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ +   ++  K G+Q+H  + ++G  + + V N ++ +Y+ CG +  A+ VF  +  
Sbjct: 330 AAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITR 389

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D++SW++++   +  GY++EA      M++   KP+      VLS C     +++G Q 
Sbjct: 390 KDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQV 449

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + +L+      E   A  ++AI+ +  + G + EA    N M  N   S + A+++    
Sbjct: 450 HAHLLCIGIDHE---AMVHSAIISMYSKCGSVQEASKIFNGMKINDIIS-WTAMINGYAE 505

Query: 245 HGNREIAVRSAKRV 258
           HG  + A+   +++
Sbjct: 506 HGYSQEAINLFEKI 519



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 12/217 (5%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  + TRN +SW AIIAG  + G   + L  FSEM ++ +  D  T    + A    S 
Sbjct: 181 VFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSL 240

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              GK +H    K G+D + FV N L  MY  CG  +   ++F  M   D+VSW +L+  
Sbjct: 241 LHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLIST 300

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMR----ND 192
               G    AV+ F++M+K+ + P+  TF  V+S+C +      G Q + +++R    N 
Sbjct: 301 YVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNA 360

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
            S+         +I+ L  + G L  A    + ++R 
Sbjct: 361 LSVA-------NSIITLYSKCGLLKSASLVFHGITRK 390



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 1/166 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVIS 76
           ++  +  R++ISW  +IAG+ N     +AL  FS M    G   D F I+  + A  +  
Sbjct: 79  MFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACALGV 138

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G+ +H    K G   +VFV + L+ MY   G I    +VF  M  R++VSW +++ 
Sbjct: 139 NICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIA 198

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           G  H GY+ E +  F +M ++++  D  TF + L A   +  +  G
Sbjct: 199 GLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHG 244


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 179/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + +++ +  R+ + WN++I+G       E+A   F +MR  G+     + 
Sbjct: 461 YSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSY 520

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   +S   +G+Q+HA I K GYD NV+V + L+ MYA CG ++DA   F  M  
Sbjct: 521 ASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVT 580

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++V+WN ++ G A +G+  +AV LFE M  TE +PDG TF+ VL+ C H+G +D+ + +
Sbjct: 581 KNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDEAIAF 640

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M +   +  P AEHYT ++  LGRAG L E E+ I++M     P V++ LL+AC VH
Sbjct: 641 FNSMESTYGIT-PLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVWEVLLAACAVH 699

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +AK +  L P +P+ YVLLSN+  +     DA  +R LM +RG+ K  GYSW
Sbjct: 700 HNAELGECAAKHLFRLDPKNPSPYVLLSNIYASLGRHGDASGVRALMSSRGVVKGRGYSW 759

Query: 306 V 306
           +
Sbjct: 760 I 760



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 85/152 (55%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN +SWN +IA         +AL+ +  M + G+   +FT+ S++ A G ++   +G++ 
Sbjct: 103 RNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAALDDGRRC 162

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H L  K+G D N+FV+N L+ MY  CG + DA ++F  M   + VS+ +++ G    G  
Sbjct: 163 HGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSV 222

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
            +A++LF +M ++ ++ D      VL +C  A
Sbjct: 223 DDALRLFARMCRSGVRVDPVAVSSVLGSCAQA 254



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 100/179 (55%), Gaps = 8/179 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   ++  + + N++S+ A++ G    GS + AL+ F+ M ++G+ +D   +
Sbjct: 185 YTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAV 244

Query: 66  TSIVGAIG--------VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
           +S++G+          V+  F+ G+ +HALI + G+ S+  V N L+ MY  C  +++A 
Sbjct: 245 SSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAV 304

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
           KVF S+     VSWN L+ G    G   +A+++   M+++  +P+  T+  +L++C  A
Sbjct: 305 KVFDSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKA 363



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 106/214 (49%), Gaps = 2/214 (0%)

Query: 13  LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           L  + ++  +   +  +WN +++G+C     +  ++ F  M+   +  D  T+  I+ + 
Sbjct: 367 LSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSC 426

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
             +     G Q+H+   +    +++FV + LV MY+ CG I  A  +F+ M ERD+V WN
Sbjct: 427 SRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWN 486

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           S++ G A H  + EA   F+QM+   + P  +++  ++++C     + +G Q    +  D
Sbjct: 487 SMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKD 546

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
              +       +A++ +  + G +++A  F + M
Sbjct: 547 GYDQNVYVG--SALIDMYAKCGNMDDARVFFDCM 578



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 40/195 (20%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C    +   V+ S+   + +SWN +I GF   GS  +AL+  + M ++G + + 
Sbjct: 291 IDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNE 350

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T ++++ +                           ++ R V           A  +F  
Sbjct: 351 VTYSNMLASC--------------------------IKARDVL---------SARAMFDK 375

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +    + +WN+LL G       ++ V+LF +MQ   ++PD TT  V+LS+C   G +D G
Sbjct: 376 ISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLG 435

Query: 183 LQYF-----YLMRND 192
            Q       +L+ ND
Sbjct: 436 TQVHSASVRFLLHND 450



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 63/234 (26%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS------------------------- 122
           +   G  ++ F+ NRLV +Y++ G   DA + F S                         
Sbjct: 34  VLAAGLGADTFLINRLVELYSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAA 93

Query: 123 ------MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--- 173
                 M +R++VSWN+++   A    + EA++L+E M +  + P   T   VLSAC   
Sbjct: 94  RALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAV 153

Query: 174 --------CHAGFIDKGLQYFYLMRN-------------DA-----SLEPPRAEHYTAIV 207
                   CH   +  GL     + N             DA      +  P    +TA++
Sbjct: 154 AALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMM 213

Query: 208 GLLGRAGFLNEAESFINSMSRNP---GPSVYKALLSACQVHGNREIAVRSAKRV 258
           G L +AG +++A      M R+     P    ++L +C      E  V  A R+
Sbjct: 214 GGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRL 267


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 178/291 (61%), Gaps = 2/291 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+S +  ++ ++W+A++AG+   G  E A+K FSE+ + G+  + FT +SI+      +
Sbjct: 453 KVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATT 512

Query: 77  G-FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               +GKQ H    K   DS++ V + L+ MYA  G I  A +VF    E+DLVSWNS++
Sbjct: 513 ASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMI 572

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG + +A+ +F++M+K ++K D  TF+ V +AC HAG +++G +YF +M  D  +
Sbjct: 573 SGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKI 632

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
            P + EH + +V L  RAG L +A   I++M    G ++++ +L+AC+VH   E+   +A
Sbjct: 633 APTK-EHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAA 691

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++++ + P D A YVLLSN+   +  W +   +R LM  R ++K+PGYSW+
Sbjct: 692 EKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWI 742



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 139/279 (49%), Gaps = 22/279 (7%)

Query: 3   ILTYSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           ++ YS+C + LD   ++       N +SW A+I+GF      E+A+  FSEM++ G+  +
Sbjct: 341 MVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPN 400

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            FT + I+ A+ VIS      ++HA + K  Y+ +  V   L+  Y   G +++A KVFS
Sbjct: 401 EFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFS 456

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-CHAGFID 180
            +D +D+V+W+++L G A  G +  A+++F ++ K  +KP+  TF  +L+ C      + 
Sbjct: 457 GIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMG 516

Query: 181 KGLQYFYLM---RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
           +G Q+       R D+SL        +A++ +  + G +  AE       R      + +
Sbjct: 517 QGKQFHGFAIKSRLDSSLCVS-----SALLTMYAKKGHIESAEEVFKR-QREKDLVSWNS 570

Query: 238 LLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276
           ++S    HG        A + LD++       V + +V+
Sbjct: 571 MISGYAQHGQ-------AMKALDVFKEMKKRKVKMDSVT 602



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 87/171 (50%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           TY +  +  D +NV+  ++ RN ++W  +I+G+      E+ L  F  M+  G   + FT
Sbjct: 141 TYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFT 200

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             + +G +        G Q+H ++ K G D  + V N L+ +Y  CG +  A  +F   +
Sbjct: 201 FAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTE 260

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
            + +V+WNS++ G A +G   EA+ +F  M+   ++   ++F  ++  C +
Sbjct: 261 VKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCAN 311



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 81/169 (47%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
            N++     R++ S+ +++ GF   G  ++A + F  ++  G+++D    +S++     +
Sbjct: 51  HNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATL 110

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+H    K G+  +V V   LV  Y       D   VF  M ER++V+W +L+
Sbjct: 111 CDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLI 170

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G A +  + E + LF +MQ    +P+  TF   L      G   +GLQ
Sbjct: 171 SGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQ 219



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 87/168 (51%), Gaps = 1/168 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +    + ++     ++ ++WN++I+G+   G   +AL  F  MR   + +   + 
Sbjct: 243 YLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSF 302

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD- 124
            SI+     +   +  +Q+H  + K G+  +  ++  L+  Y+ C A+ DA ++F     
Sbjct: 303 ASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGF 362

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
             ++VSW +++ G   +    EAV LF +M++  ++P+  T+ V+L+A
Sbjct: 363 LGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTA 410



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 2/128 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+   R ++ +SWN++I+G+   G   +AL  F EM++  + +D  T   +  A    
Sbjct: 554 EEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHA 613

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNR-LVFMYAICGAINDANKVFSSM-DERDLVSWNS 133
              +EG++   ++ +    +     N  +V +Y+  G +  A KV  +M +      W +
Sbjct: 614 GLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRT 673

Query: 134 LLLGCAHH 141
           +L  C  H
Sbjct: 674 ILAACRVH 681


>gi|15242443|ref|NP_198784.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171206|sp|Q9FK93.1|PP406_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39680; AltName: Full=Protein EMBRYO DEFECTIVE 2744
 gi|9758344|dbj|BAB08900.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007080|gb|AED94463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 175/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C   L  Q V+     +N      I+  +    S E+AL  FS+M    +  + 
Sbjct: 279 INMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNE 338

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T   ++ +I  +S  K+G  +H L+ K GY ++V V N LV MYA  G+I DA K FS 
Sbjct: 339 YTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSG 398

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD+V+WN+++ GC+HHG  REA++ F++M  T   P+  TF+ VL AC H GF+++G
Sbjct: 399 MTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEIPNRITFIGVLQACSHIGFVEQG 458

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L YF  +     ++P   +HYT IVGLL +AG   +AE F+ +         ++ LL+AC
Sbjct: 459 LHYFNQLMKKFDVQPD-IQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRTLLNAC 517

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            V  N  +  + A+  ++ +PND  +YVLLSN+   +  W+    +R+LM NRG++K+PG
Sbjct: 518 YVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKKEPG 577

Query: 303 YSWV 306
            SW+
Sbjct: 578 VSWI 581



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 1/166 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-IDYFT 64
           Y +C  ++  + ++  +  RN +SW A++ G+ N G   + LK F  M  +G    + F 
Sbjct: 79  YVKCRETVRARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFV 138

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            T +  +       +EGKQ H    K G  S+ FV+N LV+MY++C    +A +V   + 
Sbjct: 139 ATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLP 198

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
             DL  ++S L G    G  +E + +  +    +   +  T+L  L
Sbjct: 199 YCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSL 244



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 4/114 (3%)

Query: 76  SGFKEGKQMHALIFKIGYDS---NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           S  + G+ +HA +      S   + +  N L+ +Y  C     A K+F  M ER++VSW 
Sbjct: 45  SYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMPERNVVSWC 104

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKT-EIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++ G  + G+  E ++LF+ M  + E +P+     VV  +C ++G I++G Q+
Sbjct: 105 AMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEEGKQF 158



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/233 (18%), Positives = 98/233 (42%), Gaps = 9/233 (3%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           +++ ++G+   G+ ++ L    +        +  T  S +     +       Q+H+ + 
Sbjct: 205 FSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMV 264

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
           + G+++ V     L+ MY  CG +  A +VF     +++    +++          EA+ 
Sbjct: 265 RFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALN 324

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY---TAI 206
           LF +M   E+ P+  TF ++L++      + +G     L+     L+     H     A+
Sbjct: 325 LFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLV-----LKSGYRNHVMVGNAL 379

Query: 207 VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL 259
           V +  ++G + +A    + M+       +  ++S C  HG    A+ +  R++
Sbjct: 380 VNMYAKSGSIEDARKAFSGMTFR-DIVTWNTMISGCSHHGLGREALEAFDRMI 431


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 184/302 (60%), Gaps = 7/302 (2%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTIT 66
           + + ++DF   +  +  +N ++W A+I+G    G  E+ALK FSEM+ A  +  +  T  
Sbjct: 299 KLERAVDF---FYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFV 355

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS--SMD 124
           S++GA   ++   EG+Q+H +I K  Y     V + L+ MY+ CG +  A K+F   S+ 
Sbjct: 356 SVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIG 415

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD+VSWN ++   AHHG+  +A+ LF++MQ    +PD  T++ +LSAC HAG +D+GL+
Sbjct: 416 HRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLK 475

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  +  D S++  R +H+T +V L GRAG L EA  FI  +   P  SV+ ALL+ C V
Sbjct: 476 LFENLVRDRSIKL-REDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNV 534

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HG+ ++   +A+++L+  P +   Y++LSN+  +T  W +A  +R  M ++G++K+PG S
Sbjct: 535 HGHIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCS 594

Query: 305 WV 306
           W+
Sbjct: 595 WI 596



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 115/243 (47%), Gaps = 26/243 (10%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R +   + + ++ ++  +N ISWN +I G+   G  +QAL  F +M +          
Sbjct: 139 YVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPE---------- 188

Query: 66  TSIVGAIGVISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            ++V    VI+ F + +++     +F    + +V     +V   +  G I+DA  +F  M
Sbjct: 189 RNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKM 248

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             R++VSWN++++G A +    EA +LFEQM + E+    +++  +++     G +++ +
Sbjct: 249 PVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPEREL----SSWNTMITGFIQNGKLERAV 304

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR----NPGPSVYKALL 239
            +FY M N   +       +TA++    + G   EA    + M       P    + ++L
Sbjct: 305 DFFYKMSNKNVVT------WTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVL 358

Query: 240 SAC 242
            AC
Sbjct: 359 GAC 361



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 50/212 (23%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ +SW A+I G+   G  E+A   F   R   I                 
Sbjct: 86  RQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFD--RNDAI----------------- 126

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                               NV     LV  Y     I +A ++F +M  ++++SWN+++
Sbjct: 127 -------------------KNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMI 167

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A  G+  +A+ LFE+M +  +     ++  V++A      +D+  + F  M      
Sbjct: 168 EGYARKGWIDQALDLFEKMPERNV----VSWNTVITAFMQRRRVDEAQELFNRM------ 217

Query: 196 EPPR-AEHYTAIVGLLGRAGFLNEAESFINSM 226
            P R    +T +V  L + G +++A    + M
Sbjct: 218 -PERDVISWTTMVAGLSKNGRIDDARLLFDKM 248



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           +SNV   N L+      G I +A +VF  M +RD+VSW +++ G    G   EA  LF++
Sbjct: 63  NSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDR 122


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 178/302 (58%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S      V++ ++ RN I+W A++ G    G  E AL+ F++M++ GI  +  T 
Sbjct: 376 YSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTF 435

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD- 124
            S+V +   +   K G+ +H  +F++G+  ++     LV MYA CG IN A ++FS    
Sbjct: 436 VSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSI 495

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +D+V WNS++ G   HG+  +AV ++ +M +  +KP+ TTFL +LSAC H+  +++G+ 
Sbjct: 496 SKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGIS 555

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M  D ++ P   +HY  +V LL RAG   EA++ I  M   PG +V +ALLS C+ 
Sbjct: 556 LFNSMERDHNIRPIE-KHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRT 614

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N  + ++++ ++L L   +P IY++LSN+      WD    IR LM NRG++K PGYS
Sbjct: 615 HKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYS 674

Query: 305 WV 306
            V
Sbjct: 675 LV 676



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 140/264 (53%), Gaps = 7/264 (2%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  + TRN +SWNA+I+G    G   ++   F  + ++    D  TI S++      + 
Sbjct: 288 VFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTAS 347

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              GK +H    +  ++SN+ +   +V +Y+ CG++  A  VF+ M +R++++W ++L+G
Sbjct: 348 LATGKILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVG 406

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLE 196
            A +G++ +A++LF QMQ+  I  +  TF+ ++ +C H G + +G   + +L R   + +
Sbjct: 407 LAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFD 466

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
                + TA+V +  + G +N AE   +  S +    ++ ++++   +HG+   AV    
Sbjct: 467 ---IVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYH 523

Query: 257 RVLD--LWPNDPAIYVLLSNVSKA 278
           ++++  L PN      LLS  S +
Sbjct: 524 KMIEEGLKPNQTTFLSLLSACSHS 547



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 117/240 (48%), Gaps = 8/240 (3%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q V+  +  ++ + WN+II G+   G  + A + F EM  +GI     T+TS++ A G I
Sbjct: 185 QRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGI 244

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              K GK MH  +  +G  +++ V    V MY+  G I  A  VF  M  R+LVSWN+++
Sbjct: 245 GNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMI 304

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG--LQYFYLMRNDA 193
            GC  +G   E+  LF ++ ++    D TT + +L  C     +  G  L    +   ++
Sbjct: 305 SGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFES 364

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           +L        TAIV L  + G L +A    N M ++     + A+L     +G+ E A+R
Sbjct: 365 NLILS-----TAIVDLYSKCGSLKQATFVFNRM-KDRNVITWTAMLVGLAQNGHAEDALR 418



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           NA++ G+   G   + L+ F  MR   +++D  + T  + A      ++ G ++ +   +
Sbjct: 99  NAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVE 158

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
            G + N FV + ++      G I +A +VF  M  +D+V WNS++ G    G    A QL
Sbjct: 159 KGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQL 218

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           F +M  + IKP   T   ++ AC   G +  G
Sbjct: 219 FFEMHGSGIKPSPITMTSLIQACGGIGNLKLG 250



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 46/103 (44%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           K  HA I      ++ FV  +LV  Y+   ++  A  VF    +   +  N++L G    
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQS 108

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           G  RE ++LF  M+   ++ D  +    L AC  +   + G++
Sbjct: 109 GRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGME 151


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/290 (37%), Positives = 179/290 (61%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +  ++ ISW +++ G+    S E++LK F +MR  G++ D F + SI+ A   ++
Sbjct: 420 TVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELT 479

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             + GKQ+H    K G   +  V N LV MYA CG ++DA+ +F SM  +D+++W ++++
Sbjct: 480 LLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIV 539

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A +G  R +++ ++ M  +  +PD  TF+ +L AC HAG +D+G +YF  M     ++
Sbjct: 540 GYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIK 599

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
           P   EHY  ++ L GR+G L+EA+  ++ M   P  +V+K+LLSAC+VH N E+A R+A 
Sbjct: 600 PG-PEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAAT 658

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            + +L P +   YV+LSN+  A+  W+D   IR LM ++GI K+PG SW+
Sbjct: 659 NLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWL 708



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 106/197 (53%), Gaps = 11/197 (5%)

Query: 6   YSRCDSSLDFQNVYSSVR--TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           Y++C    + + ++  +    +N + W A++ G+   G G +A++ F  M   G++ + +
Sbjct: 207 YAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQY 266

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T  +I+ A   +     G+Q+H  I K G+ SNV+VQ+ LV MYA CG + +A  +  +M
Sbjct: 267 TFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETM 326

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC---------C 174
           ++ D+VSWNSL++G   HG   EA++LF+ M    +K D  TF  VL+ C          
Sbjct: 327 EDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSV 386

Query: 175 HAGFIDKGLQYFYLMRN 191
           H   I  G + + L+ N
Sbjct: 387 HGLIIKTGFENYKLVSN 403



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 4/221 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    + +N+  ++   + +SWN+++ GF   G  E+AL+ F  M    + ID +T 
Sbjct: 310 YAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTF 369

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++     + G    K +H LI K G+++   V N LV MYA  G ++ A  VF  M E
Sbjct: 370 PSVLNC--CVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLE 427

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D++SW SL+ G A +    E++++F  M+ T + PD      +LSAC     ++ G Q 
Sbjct: 428 KDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQ- 486

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
            +L    + L   ++  Y ++V +  + G L++A++   SM
Sbjct: 487 VHLDFIKSGLRWSQSV-YNSLVAMYAKCGCLDDADAIFVSM 526



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 9/229 (3%)

Query: 34  IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY 93
           I+G+C  G   +A   F  MR  G     FT+ S++     +   + G+ +H  + K G+
Sbjct: 134 ISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGF 193

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSM--DERDLVSWNSLLLGCAHHGYSREAVQLF 151
           + NVFV   LV MYA C  +++A  +F  +  D ++ V W +++ G A +G   +AV+ F
Sbjct: 194 EGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFF 253

Query: 152 EQMQKTEIKPDGTTFLVVLSACCH--AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL 209
             M    ++ +  TF  +L+AC    A    + +  F +     S         +A+V +
Sbjct: 254 RYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGS----NVYVQSALVDM 309

Query: 210 LGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258
             + G L  A++ + +M  +   S + +L+     HG  E A+R  K +
Sbjct: 310 YAKCGDLKNAKNMLETMEDDDVVS-WNSLMVGFVRHGLEEEALRLFKNM 357



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 6/156 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++C    D   ++ S++ ++ I+W AII G+   G G  +LK +  M  +G   D+
Sbjct: 507 VAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDF 566

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T   ++ A        EG++    + K+ G          ++ ++   G +++A ++  
Sbjct: 567 ITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLD 626

Query: 122 SMDER-DLVSWNSLLLGCAHHG----YSREAVQLFE 152
            MD + D   W SLL  C  H       R A  LFE
Sbjct: 627 QMDVKPDATVWKSLLSACRVHENLELAERAATNLFE 662



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 34/57 (59%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
           +++  N+L+   +  G +NDA K+F  M ++D  SWN+++    + G   EA +LF+
Sbjct: 64  SIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFD 120


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 105/289 (36%), Positives = 172/289 (59%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+  SWNA+I G+   GSGE+ALK  S+M + G+  D+ T+ S++ A   ++ 
Sbjct: 183 LFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLAS 242

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            +EG++ H L+ K GY+S + + N L+ MY  CG+I D+   F  +D  D+VSWN+++  
Sbjct: 243 LQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAA 302

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG+   A+  F +M+   ++PDG TFL +LSAC HAG + + L +F  M     +  
Sbjct: 303 FARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKI-V 361

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           PR EH+  +V +L R G + +A   I  M       ++ ALL+AC VH N ++   +AK+
Sbjct: 362 PRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKK 421

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++L P +   YV+LSN+  A   W +   +R LM  +G++K+P YSW+
Sbjct: 422 IVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWM 470



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 112/269 (41%), Gaps = 44/269 (16%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           R D   +   ++  +  RN IS+ A++ G+  +G  EQA   F+ M Q           +
Sbjct: 80  RYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQ----------KN 129

Query: 68  IVGAIGVISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +V    +ISG+ E  +      +F+   D N+     ++  Y   G  + A  +F  +  
Sbjct: 130 VVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPC 189

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDL SWN+++ G A +G   EA++L  QM K  ++PD +T + VL+AC     + +G + 
Sbjct: 190 RDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKT 249

Query: 186 FYLMRNDA-----------------------------SLEPPRAEHYTAIVGLLGRAGFL 216
             L+                                  ++ P    + A++    R GF 
Sbjct: 250 HVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFY 309

Query: 217 NEAESFINSMSRN---PGPSVYKALLSAC 242
           + A +    M  N   P    + +LLSAC
Sbjct: 310 DRALASFGEMRSNRVEPDGITFLSLLSAC 338



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 12/175 (6%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S LD +  +  +   + +SWNA+IA F   G  ++AL  F EMR   ++ D 
Sbjct: 269 ITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDG 328

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALI--FKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            T  S++ A G      E     +++I  +KI      F    LV + +  G +  A K+
Sbjct: 329 ITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFAC--LVDILSRGGQVEKAYKI 386

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLS 171
              M  E D   W +LL  C  H      V+L E   K   E++P  +   VVLS
Sbjct: 387 IQEMPFEADCGIWGALLAACHVH----LNVKLGELAAKKIVELEPQNSGAYVVLS 437



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 99/246 (40%), Gaps = 40/246 (16%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI--------------DID----YFTIT 66
           R+ +SWN+II G+   G  +++ + F  M    +               ID    YF   
Sbjct: 4   RDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAM 63

Query: 67  ---SIVGAIGVISGFKEGKQMH--ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
              +      +ISG     ++   + +F+     NV     +V  YA  G I  A  +F+
Sbjct: 64  PQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFN 123

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M ++++VSW  ++ G   +G   EA  LFEQM    I         +++  C  G  DK
Sbjct: 124 CMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNI----VAMTAMITGYCKEGKTDK 179

Query: 182 GLQYFYLM--RNDASLEPPRAEHYTAIVGLLGRAGFLNEA---ESFINSMSRNPGPSVYK 236
               F  +  R+ AS        + A++    + G   EA    S +  M   P  S   
Sbjct: 180 AKILFDQIPCRDLAS--------WNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLI 231

Query: 237 ALLSAC 242
           ++L+AC
Sbjct: 232 SVLTAC 237



 Score = 42.0 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 14/108 (12%)

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD VSWNS++ G   +G   E+ +LF  M    +     ++  +++ C     ID+ 
Sbjct: 1   MPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNV----VSWNSMIAGCIEDERIDEA 56

Query: 183 LQYFYLM--RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
            QYF  M  RN AS        + A++  L R   + EA      M R
Sbjct: 57  WQYFQAMPQRNTAS--------WNAMISGLVRYDRVEEASRLFEEMPR 96


>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
          Length = 586

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 178/302 (58%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID-YFT 64
           Y+    S +   ++ S+  RN  +W A+I+G  N G    A++ F EMR+ G+ ID  F 
Sbjct: 157 YASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFV 216

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++ ++GA   ++ F  G+Q+H    ++G+ SN+ V N L+ MY+ C  I  A +VF  + 
Sbjct: 217 LSIVIGASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGIT 276

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD++SW ++++G A HG + EA+ L+++M     KP+  TF+ ++ AC HAG + KG Q
Sbjct: 277 FRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQ 336

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M+N+  +  PR +HYT  + LL R+G L EAE  + +M   P  + + ALLSAC  
Sbjct: 337 LFESMKNEYGIT-PRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTK 395

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           + + E+ +R + ++L+L P D + Y+LLSNV      WD    +R  M    IRK+PGYS
Sbjct: 396 YKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYS 455

Query: 305 WV 306
           W+
Sbjct: 456 WI 457



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 5/189 (2%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYF 63
            Y++     D  +++     R+   +++++    +  S E AL     M  A  +  D+F
Sbjct: 23  AYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSASPELALPILRCMLSADALHPDHF 82

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            I+S+      +   + G+Q+HA      Y+ +  V++ LV MY  CG+ +D  KVF SM
Sbjct: 83  VISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSM 142

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             ++ V W +L+ G A +G S EA+QLF  M    +      +  ++S   + G     +
Sbjct: 143 SAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNL----FAWTALISGLVNTGESVGAV 198

Query: 184 QYFYLMRND 192
           + F  MR D
Sbjct: 199 ELFVEMRRD 207


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 184/302 (60%), Gaps = 7/302 (2%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTIT 66
           + + ++DF   +  +  +N ++W A+I+G    G  E+ALK FSEM+ A  +  +  T  
Sbjct: 299 KLERAVDF---FYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFV 355

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS--SMD 124
           S++GA   ++   EG+Q+H +I K  Y     V + L+ MY+ CG +  A K+F   S+ 
Sbjct: 356 SVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIG 415

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD+VSWN ++   AHHG+  +A+ LF++MQ    +PD  T++ +LSAC HAG +D+GL+
Sbjct: 416 HRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLK 475

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  +  D S++  R +H+T +V L GRAG L EA  FI  +   P  SV+ ALL+ C V
Sbjct: 476 LFENLVRDRSIKL-REDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNV 534

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HG+ ++   +A+++L+  P +   Y++LSN+  +T  W +A  +R  M ++G++K+PG S
Sbjct: 535 HGHIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCS 594

Query: 305 WV 306
           W+
Sbjct: 595 WI 596



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 114/243 (46%), Gaps = 26/243 (10%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R +   + + ++ ++  +N ISWN +I G+   G  +QAL  F  M +          
Sbjct: 139 YVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPE---------- 188

Query: 66  TSIVGAIGVISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            ++V    VI+ F + +++     +F    + +V     +V   +  G I+DA  +F  M
Sbjct: 189 RNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKM 248

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             R++VSWN++++G A +    EA +LFEQM + E+    +++  +++     G +++ +
Sbjct: 249 PVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPEREL----SSWNTMITGFIQNGKLERAV 304

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR----NPGPSVYKALL 239
            +FY M N   +       +TA++    + G   EA    + M       P    + ++L
Sbjct: 305 DFFYKMSNKNVVT------WTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVL 358

Query: 240 SAC 242
            AC
Sbjct: 359 GAC 361



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 84/212 (39%), Gaps = 50/212 (23%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ +SW A+I G+   G  E+A   F   R   I                 
Sbjct: 86  RQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFD--RNDAI----------------- 126

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                               NV     LV  Y     I +A ++F +M  ++++SWN+++
Sbjct: 127 -------------------KNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMI 167

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A  G+  +A+ LFE M +  +     ++  V++A      +D+  + F  M      
Sbjct: 168 EGYARKGWIDQALDLFEXMPERNV----VSWNTVITAFMQRRRVDEAQELFNRM------ 217

Query: 196 EPPR-AEHYTAIVGLLGRAGFLNEAESFINSM 226
            P R    +T +V  L + G +++A    + M
Sbjct: 218 -PERDVISWTTMVAGLSKNGRIDDARLLFDKM 248



 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           +SNV   N L+      G I +A +VF  M +RD+VSW +++ G    G   EA  LF++
Sbjct: 63  NSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDR 122


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C  +     ++  +  RN ++WN++I G+   G   +AL  F EM   G++ D FT+
Sbjct: 40  YAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTM 99

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +     G++ H  + K+G D N+   N L+ +YA CG+I  A+KVF  M+E
Sbjct: 100 VSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEE 159

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           + +VSW SL++G A +G+ +EA++LF+++++  + P   TF+ VL AC H G +D+G  Y
Sbjct: 160 KSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDY 219

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+ +  +  P+ EHY  +V LLGRAG + +A  FI +M   P   V++ LL AC +H
Sbjct: 220 FKRMKEEYGIV-PKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIH 278

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+  +   +  ++L L P     YVLLSN+  +   W D   +R  M   G++K PG+S 
Sbjct: 279 GHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSL 338

Query: 306 V 306
           V
Sbjct: 339 V 339



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 92/159 (57%), Gaps = 8/159 (5%)

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
           AI  +   +EG+++H++  + G++S VFVQN LV MYA CG    A+K+F  M ER+LV+
Sbjct: 4   AIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVT 63

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLM 189
           WNS++ G A +G   EA+ LF +M    ++PDG T + +LSAC   G +  G + + Y++
Sbjct: 64  WNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV 123

Query: 190 RN--DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           +   D +L         A++ L  + G + +A    + M
Sbjct: 124 KVGLDGNLHA-----GNALLDLYAKCGSIRQAHKVFDEM 157


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           + +C +  +   ++S +  R+ +SWN+++A +   G   +AL  F +MR  G+     T+
Sbjct: 138 FVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATV 197

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +    +G  +H  I     + N  V   LV MYA CG I+ A +VF++M+ 
Sbjct: 198 VSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMES 257

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+++WN+++ G A HG+ +EA QLF++M++  ++P+  TF+ +LSAC HAG +D+G + 
Sbjct: 258 KDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKL 317

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M +   +E P+ EHY  ++ LL RAG L EA   I +M   P PS   ALL  C++H
Sbjct: 318 LDCMSSSYGIE-PKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIH 376

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+     KR+++L P     Y+LLSN+  A   WDDA  +R LM   GI K PG S 
Sbjct: 377 GNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSV 436

Query: 306 V 306
           +
Sbjct: 437 I 437



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 129/265 (48%), Gaps = 13/265 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++S    R+ +SWNA+I G+   G        F  M    +  D  +  +I+    ++
Sbjct: 55  KQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRM----VCRDVISWNTIINGYAIV 110

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               E K++    F    + N+   N ++  +  CG + +A  +FS M  RD+VSWNS+L
Sbjct: 111 GKIDEAKRL----FDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSML 166

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
              A  G   EA+ LF+QM+   +KP   T + +LSAC H G +DKGL + +   ND  +
Sbjct: 167 ACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGL-HLHTYINDNRI 225

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           E   +   TA+V +  + G ++ A    N+M  +     +  +++   +HG+ + A +  
Sbjct: 226 E-VNSIVGTALVDMYAKCGKISLATQVFNAM-ESKDVLAWNTIIAGMAIHGHVKEAQQLF 283

Query: 256 KRVLD--LWPNDPAIYVLLSNVSKA 278
           K + +  + PND     +LS  S A
Sbjct: 284 KEMKEASVEPNDITFVAMLSACSHA 308



 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G  +H  + K G++ + ++ N L+ +YA    +  A ++FS   +RD+VSWN+++ G   
Sbjct: 19  GLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVK 78

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
            G       +F++M    +  D  ++  +++     G ID+  + F  M
Sbjct: 79  RGEMGHTRMVFDRM----VCRDVISWNTIINGYAIVGKIDEAKRLFDEM 123


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/293 (36%), Positives = 174/293 (59%), Gaps = 2/293 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D ++++ ++ +R+ +SW  II+ +     G++A++ F  M       +   +T ++   G
Sbjct: 502 DARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCG 561

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +   K G+Q+H +  K G DS + V N L+ MY  CG   D++KVF SM+ERD+ +WN+
Sbjct: 562 GLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCA-DSHKVFDSMEERDIFTWNT 620

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
            + GCA HG  REA++++E M+   + P+  TF+ +L+AC HAG +D+G Q+F  M  D 
Sbjct: 621 FITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDY 680

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            L  P  EHY  +V LLGR G +  AE FI  M   P   ++ ALL AC++H N EI  R
Sbjct: 681 GL-TPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRR 739

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +A+++    P++   YV+LSN+  +   W +  ++R +M  RG+ K+PG SW+
Sbjct: 740 AAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWM 792



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 6/199 (3%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN ISW  +IAG+   G  E+AL     + + G+     ++TS   A   I
Sbjct: 372 KELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHI 431

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G+Q+H+L  K G   N +V N L+ MY  C  +    +VF+ M  +D VSWNS +
Sbjct: 432 GALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFI 491

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
                +    +A  +F+ M    +  D  ++  ++SA   A   D+ +++F  M ++   
Sbjct: 492 AALVQNNMLEDARHIFDNM----LSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEH-- 545

Query: 196 EPPRAEHYTAIVGLLGRAG 214
           E P +   T ++ + G  G
Sbjct: 546 EKPNSPILTILLSVCGGLG 564



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 16/195 (8%)

Query: 2   QILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           +I   +R     + + V+ ++  R+ I+WN++I+ +CN G  E A   F  +  +G ++ 
Sbjct: 39  RIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAI--SGGNVR 96

Query: 62  YFTITSIVGAIGVISGF-KEGKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
             TI        ++SG+ + G+ + A  +F    + N    N +V  Y   G I  A ++
Sbjct: 97  TATI--------LLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRL 148

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F +M  RD+ SWNS++ G  H     +A  LF+QM +  +     T+ V++S        
Sbjct: 149 FDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNL----VTWTVMISGYVRIEQH 204

Query: 180 DKGLQYFYLMRNDAS 194
            KG   F +M ++ +
Sbjct: 205 GKGWDIFRMMHHEGA 219



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 96/225 (42%), Gaps = 11/225 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y      +D  N++  +  RN ++W  +I+G+  +    +    F  M   G   D 
Sbjct: 164 VTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQ 223

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI-CGAINDANKVFS 121
               S++ A+  +      + +  L+ K G++S+V +   ++ +Y     A++ A K F 
Sbjct: 224 SNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFD 283

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M ER+  +W++++   +H G    A+ ++ +     I P  T  L  L+ C   G I +
Sbjct: 284 GMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALLTGLARC---GRITE 339

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
               F        +  P    + A++    + G ++EA+   + M
Sbjct: 340 ARILF------EQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRM 378



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 13/186 (6%)

Query: 6   YSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y+R  S+LD     +  +  RN+ +W+ +IA   + G  + A+  +      G D     
Sbjct: 268 YTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVY------GRD----P 317

Query: 65  ITSIVGAIGVISGFKE-GKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           + SI     +++G    G+   A ++F+   D  V   N ++  Y   G +++A ++F  
Sbjct: 318 VKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDR 377

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  R+ +SW  ++ G A +G S EA+ L + + +  + P  ++      AC H G ++ G
Sbjct: 378 MPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETG 437

Query: 183 LQYFYL 188
            Q   L
Sbjct: 438 RQVHSL 443


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 182/301 (60%), Gaps = 3/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      QNV++ +  R+++S+N +I G+       ++L+ FSEMR  G+  D  + 
Sbjct: 488 YSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSF 546

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             +V A   ++  ++GK++H L+ +  + +++FV N L+ +Y  CG I+ A KVF  +  
Sbjct: 547 MGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQN 606

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+ SWN+++LG    G    A+ LFE M++  ++ D  +F+ VLSAC H G I+KG +Y
Sbjct: 607 KDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKY 666

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M  D ++EP    HY  +V LLGRAG + EA   I  +S  P  +++ ALL AC++H
Sbjct: 667 FKMM-CDLNIEPTHT-HYACMVDLLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACRIH 724

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+ + +A+ + +L P     Y+LLSN+    + WD+A  +R LM +RG +K PG SW
Sbjct: 725 GNIELGLWAAEHLFELKPQHCGYYILLSNMYAEAERWDEANKVRELMKSRGAKKNPGCSW 784

Query: 306 V 306
           V
Sbjct: 785 V 785



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 4/226 (1%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y +C S    + V+  +  RN ISWNAII  F   G    AL  F  M   G+  +  T
Sbjct: 285 VYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVT 344

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I+S++  +G +  FK G ++H    K+  +S+VF+ N L+ MYA  G+   A+ +F+ M 
Sbjct: 345 ISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMG 404

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            R++VSWN+++   A +    EAV+L  QMQ     P+  TF  VL AC   GF++ G +
Sbjct: 405 VRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKE 464

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
            +  ++R  +SL+   +    A+  +  + G LN A++  N   R+
Sbjct: 465 IHARIIRVGSSLDLFVS---NALTDMYSKCGCLNLAQNVFNISVRD 507



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 5/166 (3%)

Query: 10  DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIV 69
           +S L FQ  +S   +R+   WN +I      G  +     ++ M +AG+  D  T   ++
Sbjct: 88  NSLLLFQ--HSVAYSRSAFLWNTLIRANSIAGVFD-GFGTYNTMVRAGVKPDECTYPFVL 144

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
                    ++G+++H + FK+G+D +VFV N L+  Y  CG   DA KVF  M ERD V
Sbjct: 145 KVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKV 204

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSAC 173
           SWN+++  C+ HG+  EA+  F  M   K  I+PD  T + VL  C
Sbjct: 205 SWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVC 250



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 5/183 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNL-GSGEQALKCFSEMRQA--GIDIDY 62
           Y  C    D   V+  +  R+++SWN +I G C+L G  E+AL  F  M  A  GI  D 
Sbjct: 182 YGNCGLFGDAMKVFDEMPERDKVSWNTVI-GLCSLHGFYEEALGFFRVMVAAKPGIQPDL 240

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGY-DSNVFVQNRLVFMYAICGAINDANKVFS 121
            T+ S++            + +H    K+G    +V V N LV +Y  CG+   + KVF 
Sbjct: 241 VTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFD 300

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            +DER+++SWN+++   +  G   +A+ +F  M    ++P+  T   +L      G    
Sbjct: 301 EIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKL 360

Query: 182 GLQ 184
           G++
Sbjct: 361 GME 363


>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 176/304 (57%), Gaps = 5/304 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C    D  NV+  +   + ++WNA+I GF +L  G  AL+CFS+M+++GI  + 
Sbjct: 336 LTMYVKCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQ 395

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            TI++++ A  +    K GKQ+HA I K  + S + V N L+ MY+ CG I  A  +FS+
Sbjct: 396 ITISTVLPACDL----KSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSN 451

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RDLVSWN+++ G   HG  + A+QL   M  +++ P+  TF   LSAC H+G +D+G
Sbjct: 452 MISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALSACSHSGLVDEG 511

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           ++ F+ M  D    P   EH++ +V LL RA  L +A  FI  M   P   ++ ALL+AC
Sbjct: 512 MELFHTMTRDFGFTPG-MEHFSCVVDLLARADRLEDAVGFIEKMPLKPSKHIWSALLAAC 570

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +   N  +A  +A+++  L P     YV LSN+      WDDA  +R LM +RG+ K  G
Sbjct: 571 RAQQNVSVAKLAAEQLFQLEPEHAGNYVTLSNIYARAGRWDDAVAVRKLMEDRGLVKPSG 630

Query: 303 YSWV 306
           YSW+
Sbjct: 631 YSWI 634



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 14/244 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C      Q ++  +   N  +W AI+  +   G  ++ ++ +SEM+  G+  D +  
Sbjct: 68  YADCGDLGSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVF 127

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             +  A G +   + G Q+H  +   G + ++ V N L+ MY+  G +    +VF  M E
Sbjct: 128 PKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVE 187

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD++SWNS++ G   +G+   +V+L   M+    +PD  T+  V+ A C  G  D+  + 
Sbjct: 188 RDVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRMGLCDEAWEI 247

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES---FINSMSRN---PGPSVYKALL 239
           F        ++ P     T +V    R G  N  +S   F   MSR    P      ++L
Sbjct: 248 F------EQIKEPNIISLTTLVSGYSRIG--NHEKSLGIFREMMSRRVAFPDLDSLSSVL 299

Query: 240 SACQ 243
            +C+
Sbjct: 300 VSCR 303



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 136/280 (48%), Gaps = 25/280 (8%)

Query: 9   CDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM---RQAGIDIDYFTI 65
           CD + +   ++  ++  N IS   +++G+  +G+ E++L  F EM   R A  D+D  ++
Sbjct: 241 CDEAWE---IFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPDLD--SL 295

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR---LVFMYAICGAINDANKVFSS 122
           +S++ +   +     G+++H    +   DS+ F ++    L+ MY  C  I DA  VF  
Sbjct: 296 SSVLVSCRHLGALVCGQEIHGYGIR-SVDSSSFYKSAGAALLTMYVKCKRIQDALNVFEL 354

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           MD  D+V+WN+++LG         A++ F +MQ++ I  +  T   VL AC     +  G
Sbjct: 355 MDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVLPAC----DLKSG 410

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES-FINSMSRNPGPSVYKALLS 240
            Q + Y+ +N  S   P    + A++ +  + G +  A S F N +SR+     +  ++ 
Sbjct: 411 KQVHAYITKNSFSSVIPV---WNALIHMYSKCGCIGTAYSIFSNMISRDLVS--WNTMIG 465

Query: 241 ACQVHGNREIAVRSAKRV--LDLWPNDPAIYVLLSNVSKA 278
              +HG  + A++  + +   D+ PN       LS  S +
Sbjct: 466 GFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALSACSHS 505



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 57/108 (52%)

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
              +GKQ+H  I   G D + F+  +LV MYA CG +  A  +F  + + ++ +W ++L 
Sbjct: 38  ALHQGKQLHQHIILCGLDHHPFMLTKLVQMYADCGDLGSAQALFDKLSQPNVFAWTAILG 97

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             + +G S E V+ + +M+   + PD   F  V  AC    +++ G+Q
Sbjct: 98  FYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLWLEVGIQ 145


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/291 (40%), Positives = 172/291 (59%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  +N +SW  +I GF   G  E+AL  F  M + G+  +  T+ S + A   I
Sbjct: 259 RELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKI 318

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G+++H  +   G+  N  +   LV MYA CG I  A++VF     +DL++W+ ++
Sbjct: 319 GALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMI 378

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG   +A+Q F +M+   I PD   FL +L+AC H+G +D+GL +F  MR D S+
Sbjct: 379 WGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSI 438

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           EP   +HYT IV LLGRAG L+EA SFI SM  NP   ++ AL  AC+ H N E+A  +A
Sbjct: 439 EPT-MKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTA 497

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++L L P  P  YV LSNV  A   W+D   +RTLM NRG+ K PG+S++
Sbjct: 498 EKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYI 548



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 105/266 (39%), Gaps = 46/266 (17%)

Query: 2   QILTYSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           Q+++ S    SLD+  +++      N   +NA+I G       E ++  F  M +  I  
Sbjct: 77  QLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRP 136

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA-------- 112
           D  T+  ++ ++  +     G+ +H  + K+G + + FV+  LV MY   G         
Sbjct: 137 DRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLF 196

Query: 113 ---------------------------INDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
                                      ++ A  +F +M ER+  SWNSL+ G   +G   
Sbjct: 197 DESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLD 256

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205
            A +LF QM +  +     ++  +++     G  +K L  F+ M      E  R    T 
Sbjct: 257 RARELFVQMPEKNV----VSWTTMINGFSQNGDHEKALSMFWRMLE----EGVRPNDLTV 308

Query: 206 IVGLLG--RAGFLNEAESFINSMSRN 229
           +  LL   + G L   E   N +S N
Sbjct: 309 VSALLACTKIGALQVGERIHNYLSSN 334



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 2/161 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +      V+   + ++ ++W+ +I G+   G  +QAL+CF +M+ AGI+ D    
Sbjct: 350 YAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIF 409

Query: 66  TSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +I+ A        +G     ++      +  +     +V +    G +++A     SM 
Sbjct: 410 LAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMP 469

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164
              D V W +L   C  H     A    E++ + E K  G+
Sbjct: 470 INPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGS 510



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 4/135 (2%)

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
           A +F+   + N    N L+  +   G ++ A ++F  M E+++VSW +++ G + +G   
Sbjct: 228 ASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHE 287

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYT 204
           +A+ +F +M +  ++P+  T +  L AC   G +  G + + YL  N   L        T
Sbjct: 288 KALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIG---T 344

Query: 205 AIVGLLGRAGFLNEA 219
           A+V +  + G +  A
Sbjct: 345 ALVDMYAKCGNIKSA 359



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 25/190 (13%)

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T  +  I   +   +  Q+HA IF     SN  V  +L+       +++ A  +F   D 
Sbjct: 41  THFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDH 100

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA-----------CC 174
            +L  +N+L+ G A +     +V  F  M +  I+PD  T   VL +           C 
Sbjct: 101 PNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCL 160

Query: 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
           H G +  GL++      D+ +     + Y  I    G  GF    + F  S  RN   S+
Sbjct: 161 HGGVMKLGLEF------DSFVRVSLVDMYVKI----GELGF--GLQLFDESPQRNKAESI 208

Query: 235 --YKALLSAC 242
             +  L++ C
Sbjct: 209 LLWNVLINGC 218


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/289 (38%), Positives = 177/289 (61%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  ++ ISW+ IIA +   G  ++A    S MR+ G   + F ++S++   G ++ 
Sbjct: 416 VFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMAL 475

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            ++GKQ+HA +  IG D    V + L+ MY+ CG++ +A+K+F+ M   +++SW +++ G
Sbjct: 476 LEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMING 535

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HGYS+EA+ LFE++    +KPD  TF+ VL+AC HAG +D G  YF LM N+  + P
Sbjct: 536 YAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISP 595

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
            + EHY  I+ LL RAG L+EAE  I SM       V+  LL +C+VHG+ +    +A++
Sbjct: 596 SK-EHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQ 654

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +L L PN    ++ L+N+  A   W +A  IR LM ++G+ K+ G+SWV
Sbjct: 655 LLRLDPNSAGTHIALANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWV 703



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 4/213 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  RN +SW AIIAG  + G   +AL  FSEM  + +  D  T    + A    S 
Sbjct: 214 VFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSL 273

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              GK +H    K G+D + FV N L  MY  CG  +   ++F  M   D+VSW +L+  
Sbjct: 274 LHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITT 333

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLE 196
               G    AV+ F++M+K+ + P+  TF  V+SAC +      G Q + +++R      
Sbjct: 334 YVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDA 393

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
              A    +IV L  ++G L  A    + ++R 
Sbjct: 394 LSVA---NSIVTLYSKSGLLKSASLVFHGITRK 423



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 127/254 (50%), Gaps = 5/254 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C  +     ++  ++  + +SW  +I  +   G  E A++ F  MR++ +  + +T 
Sbjct: 303 YNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTF 362

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A   ++  K G+Q+H  + ++G    + V N +V +Y+  G +  A+ VF  +  
Sbjct: 363 AAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITR 422

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D++SW++++   +  GY++EA      M++   KP+      VLS C     +++G Q 
Sbjct: 423 KDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQV 482

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + +++      E   A  ++A++ +  + G + EA    N M  N   S + A+++    
Sbjct: 483 HAHVLCIGIDHE---AMVHSALISMYSKCGSVEEASKIFNGMKINNIIS-WTAMINGYAE 538

Query: 245 HGNREIAVRSAKRV 258
           HG  + A+   +++
Sbjct: 539 HGYSQEAINLFEKI 552



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 43/273 (15%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVIS 76
           ++  +  R++ISW  +IAG+ N     +AL  FS M  Q G+  D F I+  + A G+  
Sbjct: 112 MFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGLGV 171

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G+ +H    K G  ++VFV + L+ MY   G I    +VF  M +R++VSW +++ 
Sbjct: 172 NICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIA 231

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG--------LQYF-- 186
           G  H GY+ EA+  F +M  +++  D  TF + L A   +  +  G         Q F  
Sbjct: 232 GLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDE 291

Query: 187 -------------------YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSM 226
                              Y+MR    ++ P    +T ++    + G    A E+F    
Sbjct: 292 SSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMR 351

Query: 227 SRNPGPSVYK--ALLSAC----------QVHGN 247
             N  P+ Y   A++SAC          Q+HG+
Sbjct: 352 KSNVSPNKYTFAAVISACANLAIAKWGEQIHGH 384


>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
          Length = 977

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 180/301 (59%), Gaps = 13/301 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D + ++  +  RN +SW+ +I G+  +G  E+AL+ F +     +D++ FT 
Sbjct: 55  YAKCGEIGDARKMFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDLDVNDFTF 114

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S+V   G  +  + GKQ+H L  K  YDS+ FV + L+ +Y+ CG I DA  VF  +  
Sbjct: 115 SSVVRVCGNSTLLELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPI 174

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+L  WN++L+ CA H ++ +A  LF+QM+   +KP+  TFL VL AC HAG ++KG  Y
Sbjct: 175 RNLGMWNAMLIACAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLVEKGQFY 234

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM+ +  +EP  A+HY ++V LLGRAG L +A S I  M   P  SV+ ALL+ C++H
Sbjct: 235 FELMK-EYGIEPG-AQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTGCRIH 292

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E+A   A RV +L P           VS A   +++A   R ++ ++G++K+ G SW
Sbjct: 293 GDTELASFVADRVFELGP-----------VSSAAGRYEEAARARKMLRDQGVKKETGLSW 341

Query: 306 V 306
           V
Sbjct: 342 V 342



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 101/200 (50%), Gaps = 5/200 (2%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           M   G+  D     S   A G++S    G+ +H+   K GYD +VFV + +V MYA CG 
Sbjct: 1   MLDNGVRPDDHIFPSATKACGILSRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGE 60

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           I DA K+F  M +R++VSW+ ++ G +  G   EA++LF+Q    ++  +  TF  V+  
Sbjct: 61  IGDARKMFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDLDVNDFTFSSVVRV 120

Query: 173 CCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS-RNPG 231
           C ++  ++ G Q   L    +          ++++ L  + G + +A    + +  RN G
Sbjct: 121 CGNSTLLELGKQIHGLCLKTSYDSSSFVG--SSLISLYSKCGVIEDAYLVFHEIPIRNLG 178

Query: 232 PSVYKALLSACQVHGNREIA 251
             ++ A+L AC  H + E A
Sbjct: 179 --MWNAMLIACAQHAHTEKA 196



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 1/141 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    D   V+  +  RN   WNA++         E+A   F +M   G+  ++
Sbjct: 153 ISLYSKCGVIEDAYLVFHEIPIRNLGMWNAMLIACAQHAHTEKAFDLFKQMEGVGMKPNF 212

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   ++ A       ++G+    L+ + G +        +V +    G + DA  +   
Sbjct: 213 ITFLCVLYACSHAGLVEKGQFYFELMKEYGIEPGAQHYASMVDLLGRAGKLKDAVSIIKK 272

Query: 123 MDERDLVS-WNSLLLGCAHHG 142
           M      S W +LL GC  HG
Sbjct: 273 MPMEPTESVWGALLTGCRIHG 293


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 178/306 (58%), Gaps = 6/306 (1%)

Query: 6   YSRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--D 61
           Y++C      + ++ S+  + R+ ++W  +I G+   G   +AL+  SEM +       +
Sbjct: 417 YAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPN 476

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDS-NVFVQNRLVFMYAICGAINDANKVF 120
            FTI+  + A   ++    GKQ+HA   +   ++  +FV N L+ MYA CG I DA  VF
Sbjct: 477 AFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVF 536

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            +M E++ V+W SL+ G   HGY  EA+ +FE+M++   K DG T LVVL AC H+G ID
Sbjct: 537 DNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMID 596

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +G++YF  M+ D  + P   EHY  +V LLGRAG LN A   I  M   P P V+ ALLS
Sbjct: 597 QGMEYFNRMKTDFGVSPG-PEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLS 655

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
            C++HG  E+   +AK++ +L  N+   Y LLSN+      W D   IR+LM ++GI+K+
Sbjct: 656 CCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKR 715

Query: 301 PGYSWV 306
           PG SWV
Sbjct: 716 PGCSWV 721



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 102/184 (55%), Gaps = 6/184 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           +  YSRC S  D + V+  +   + +SWN+II  +  LG  + AL+ FS+M  + G   D
Sbjct: 169 VAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPD 228

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             T+ +++     +     GKQ H          N+FV N LV MYA  G +++AN VFS
Sbjct: 229 DITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFS 288

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           +M  +D+VSWN+++ G +  G   +AV+LFEQMQ+ +IK D  T+   +S     G+  +
Sbjct: 289 NMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAIS-----GYAQR 343

Query: 182 GLQY 185
           GL Y
Sbjct: 344 GLGY 347



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 4/225 (1%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN++I  + N G   + L  F  M       D +T   +  A G IS  + G   HAL  
Sbjct: 95  WNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSR 154

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
             G+ SNVFV N LV MY+ CG+++DA KVF  M   D+VSWNS++   A  G  + A++
Sbjct: 155 VTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALE 214

Query: 150 LFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208
           +F +M  +   +PD  T + VL  C   G    G Q+         ++     +   +V 
Sbjct: 215 MFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGN--CLVD 272

Query: 209 LLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           +  + G ++EA +  ++M      S + A+++     G  E AVR
Sbjct: 273 MYAKFGMMDEANTVFSNMPVKDVVS-WNAMVAGYSQIGRFEDAVR 316



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 119/251 (47%), Gaps = 17/251 (6%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F+ +       + ++W+A I+G+   G G +AL    +M  +GI  +  T+ S++     
Sbjct: 318 FEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCAS 377

Query: 75  ISGFKEGKQMHALIFKI-------GYDSNVFVQNRLVFMYAICGAINDANKVFSSMD--E 125
           +     GK++H    K        G+     V N+L+ MYA C  ++ A  +F S+   E
Sbjct: 378 VGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKE 437

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           RD+V+W  ++ G + HG + +A++L  +M  +  + +P+  T    L AC     +  G 
Sbjct: 438 RDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGK 497

Query: 184 Q-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE-SFINSMSRNPGPSVYKALLSA 241
           Q + Y +RN  +  P    +   ++ +  + G + +A   F N M +N     + +L++ 
Sbjct: 498 QIHAYALRNQQNAVPLFVSN--CLIDMYAKCGDIGDARLVFDNMMEKN--EVTWTSLMTG 553

Query: 242 CQVHGNREIAV 252
             +HG  E A+
Sbjct: 554 YGMHGYGEEAL 564


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 181/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C S    + +++    T+++++WN IIA +   G  ++A+  F +MR      +  T
Sbjct: 576 YAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVT 635

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++ A   ++ F+EG   HA I ++G+ SN  V N L+ MYA CG ++ + K+F+ MD
Sbjct: 636 FVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMD 695

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +D VSWN++L G A HG+   A+ LF  MQ+++++ D  +F+ VLSAC HAG +++G +
Sbjct: 696 HKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRK 755

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F+ M +   ++P   EHY  +V LLGRAG  +E   FI  M   P   V+ ALL +C++
Sbjct: 756 IFHSMSDKYHIKPD-LEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRM 814

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N ++   +   ++ L P +PA +V+LS++   +  W DAG  R+ M + G++K PG S
Sbjct: 815 HSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCS 874

Query: 305 WV 306
           WV
Sbjct: 875 WV 876



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 129/269 (47%), Gaps = 14/269 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ Y++C  +   + ++  ++ R+ ++W+AIIA     G  E+AL  F EM+   +  + 
Sbjct: 371 MVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNR 430

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ SI+ A   +S  K GK +H    K   DS++     LV MYA CG    A   F+ 
Sbjct: 431 VTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNR 490

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD+V+WNSL+ G A  G    A+ +F +++ + I PD  T + V+ AC     +D+G
Sbjct: 491 MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG 550

Query: 183 LQYFYLM-----RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
                L+      +D  ++        A++ +  + G L  AE   N          +  
Sbjct: 551 TCIHGLIVKLGFESDCHVK-------NALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNV 603

Query: 238 LLSACQVHGNREIAVRS--AKRVLDLWPN 264
           +++A   +G+ + A+ S    R+ +  PN
Sbjct: 604 IIAAYMQNGHAKEAISSFHQMRLENFHPN 632



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + V+  +  ++ +SW  ++AG+ + G   + L+ F +M+   + I+  + 
Sbjct: 273 YSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSA 332

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S   A       ++GK++H    +   DS++ V   L+ MYA CG    A ++F  +  
Sbjct: 333 VSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQG 392

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RDLV+W++++      GY  EA+ LF++MQ  ++KP+  T + +L AC     +  G   
Sbjct: 393 RDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI 452

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
           + + ++ D   +       TA+V +  + GF   A +  N MS
Sbjct: 453 HCFTVKADMDSDLSTG---TALVSMYAKCGFFTAALTTFNRMS 492



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 3/175 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           + +CD +   ++V+ S    ++I WN++I  +       +AL+ +  M + G++ D +T 
Sbjct: 76  FHKCDLA---RSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTF 132

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T ++ A       +EG   H  I + G + +VF+   LV MY+  G +  A +VF  M +
Sbjct: 133 TFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPK 192

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           RD+V+WN+++ G +      EAV  F  MQ   ++P   + L +    C    I+
Sbjct: 193 RDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIE 247



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 92/177 (51%), Gaps = 2/177 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+       + V+  +  R+ ++WNA+IAG        +A+  F  M+  G++    ++
Sbjct: 174 YSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSL 233

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            ++   I  +S  +  + +H  +F+  + S V   N L+ +Y+ CG ++ A +VF  M +
Sbjct: 234 LNLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLIDLYSKCGDVDVARRVFDQMVD 291

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +D VSW +++ G AH+G   E ++LF++M+   ++ +  + +    A      ++KG
Sbjct: 292 QDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           Q+HA I   G+  +  + + L+ +Y++    + A  VF S      + WNS++       
Sbjct: 50  QIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSK 108

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
              EA++++  M +  ++PD  TF  VL AC  A  + +G+ +
Sbjct: 109 QYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWF 151


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 180/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+R     D +  +  +  +N IS+N +I  +    + E+AL+ F+E+   G+    
Sbjct: 418 ISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASA 477

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++     I    +G+Q+HA + K G   N  V N L+ MY+ CG I  A +VF  
Sbjct: 478 FTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFED 537

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M++R+++SW S++ G A HG++ +A++LF +M +  ++P+  T++ VLSAC H G +++G
Sbjct: 538 MEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEG 597

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            ++F  M  +  +  PR EHY  IV +LGR+G L+EA  FINSM       V++  L AC
Sbjct: 598 WKHFKSMYTEHGV-IPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGAC 656

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN E+   +AK +++  P+DPA Y+LLSN+  +   WD+  +IR  M  + + K+ G
Sbjct: 657 RVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAG 716

Query: 303 YSWV 306
            SWV
Sbjct: 717 CSWV 720



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 121/273 (44%), Gaps = 36/273 (13%)

Query: 6   YSRC--DSSL-DFQNVYSSVRTRNQISWNAIIAGFCNLGS-GEQALKCFSEMRQAGIDID 61
           Y++C  D S+   + ++  +   N  SW A+I G+   G   E+AL  F  M    +  +
Sbjct: 316 YAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPN 375

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           +FT +S + A   ++  + G+Q+     K+G+ S   V N L+ MYA  G I+DA K F 
Sbjct: 376 HFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFD 435

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + E++L+S+N+++   A +  S EA++LF +++   +     TF  +LS     G I K
Sbjct: 436 ILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGK 495

Query: 182 GLQYFY------LMRNDA-----------------------SLEPPRAEHYTAIVGLLGR 212
           G Q         L  N +                        +E      +T+I+    +
Sbjct: 496 GEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAK 555

Query: 213 AGFLNEAESFINSMSRN---PGPSVYKALLSAC 242
            GF  +A    + M      P    Y A+LSAC
Sbjct: 556 HGFATQALELFHKMLEEGVRPNEVTYIAVLSAC 588



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  RN ++W  +I      G   +A+  F +M  +G + D FT++ ++ A   +  
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMEL 286

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC---GAINDANKVFSSMDERDLVSWNSL 134
              G+Q+H+   + G   +  V   L+ MYA C   G++  A K+F  + + ++ SW ++
Sbjct: 287 LLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAM 346

Query: 135 LLGCAHH-GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
           + G     GY  EA+ LF  M  T + P+  TF   L AC +   +  G Q F
Sbjct: 347 ITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 3/185 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSV-RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I  YS+C       +++  +  +R+ ISW+A+++ F N   G +AL  F +M + G   +
Sbjct: 108 ISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPN 167

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGY-DSNVFVQNRLVFMYAIC-GAINDANKV 119
            +   +   A         G  +   + K GY  S+V V   L+ M+    G +  A KV
Sbjct: 168 EYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKV 227

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M ER+ V+W  ++      GY+ EA+ LF  M  +  +PD  T   V+SAC +   +
Sbjct: 228 FEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELL 287

Query: 180 DKGLQ 184
             G Q
Sbjct: 288 LLGQQ 292



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 1/149 (0%)

Query: 39  NLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVF 98
           N G   +A+     M   G   D  T +  +        F  G  +H  + +     +  
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 99  VQNRLVFMYAICGAINDANKVFSSM-DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157
             N L+ +Y+ CG    A  +F  M   RDL+SW++++   A++     A+  F  M + 
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 158 EIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
              P+   F     AC  A F+  G   F
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIF 191


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 183/307 (59%), Gaps = 7/307 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  S    + ++S++  RN +SWNA+IAG+   G  E+A++ F  +++  I   ++T 
Sbjct: 329 YAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTF 388

Query: 66  TSIVGAIGVISGFKEGKQMHALI------FKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            +++ A   ++  K G+Q H  I      FK G DS++FV N L+ MY  CG + D   V
Sbjct: 389 GNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLV 448

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M ERD VSWN++++G A +GY  EA+++F +M  +  +PD  T + VLSAC HAG +
Sbjct: 449 FERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLV 508

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           ++G  YF  M  +  L P + +HYT +V LLGRAG L+EA + I +M   P   V+ +LL
Sbjct: 509 EEGRCYFQSMTIEHGLVPVK-DHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLL 567

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           +AC+VHGN  +    A+R+L++ P +   YVLLSN+      W D   +R  M   G+ K
Sbjct: 568 AACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIK 627

Query: 300 KPGYSWV 306
           +PG SW+
Sbjct: 628 QPGCSWI 634



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 97/177 (54%), Gaps = 1/177 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           N++  +  R+Q SWNA+++GF      E+AL+   +M      ++ ++  S + A   + 
Sbjct: 106 NLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLM 165

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G Q+H LI K  Y  +V++ + LV MY+ C  +  A + F  MD R++VSWNSL+ 
Sbjct: 166 DLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLIT 225

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
               +G + +A+++F +M    I+PD  T   V SAC     I +GLQ +  +M++D
Sbjct: 226 CYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHD 282



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 32/211 (15%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      Q  +  +  RN +SWN++I  +   G   +AL+ F  M   GI+ D  T+
Sbjct: 196 YSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITL 255

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKV----- 119
            S+  A   +S  +EG Q+HA + K   Y +++ + N LV MYA C  +N+A  V     
Sbjct: 256 ASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMP 315

Query: 120 --------------------------FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                                     FS+M ER++VSWN+L+ G   +G + EAV+LF  
Sbjct: 316 LRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLL 375

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++  I P   TF  +L+AC +   +  G Q
Sbjct: 376 LKRESIWPTHYTFGNLLNACANLADLKLGRQ 406



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           E + +HA I K  + S +F+QNRLV +Y  CG + DA KVF  M +R+  SWN++L    
Sbjct: 37  EARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALT 96

Query: 140 HHGYSREAVQLFEQMQKTE 158
             G   EA+ LF+ M + +
Sbjct: 97  KFGALDEALNLFKCMPERD 115


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 179/304 (58%), Gaps = 4/304 (1%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DY 62
           TY++C      + V+  +  +N +SW+ +I G+  +G  E+AL  F    +   DI  + 
Sbjct: 152 TYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVND 211

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT++S++      + F+ GKQ+H L FK  +DS+ FV + L+ +Y+ CG +    KVF  
Sbjct: 212 FTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEE 271

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  R+L  WN++L+ CA H ++    +LFE+M++  +KP+  TFL +L AC HAG ++KG
Sbjct: 272 VKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHAGLVEKG 331

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
              F LM+ +  +EP  ++HY  +V LLGRAG L EA   I  M   P  SV+ ALL+ C
Sbjct: 332 EHCFGLMK-EHGIEPG-SQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTESVWGALLTGC 389

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN E+A   A +V ++      I VLLSN   A   W++A   R +M ++GI+K+ G
Sbjct: 390 RIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARARKMMRDQGIKKETG 449

Query: 303 YSWV 306
            SWV
Sbjct: 450 LSWV 453



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 124/281 (44%), Gaps = 15/281 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+ +       ++ S   ++  +W+++I+ F        AL+ F  M + G+  D  T+
Sbjct: 52  YSKTNLPHSSLKLFDSFPHKSATTWSSVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTL 111

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +   ++  +S       +HAL  K  +  +VFV + LV  YA CG +N A KVF  M  
Sbjct: 112 PTAAKSVAALSSLPLALSLHALSLKTAHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPH 171

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           +++VSW+ ++ G +  G   EA+ LF++   Q  +I+ +  T   VL  C  +   + G 
Sbjct: 172 KNVVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGK 231

Query: 184 QYFYLMRN---DASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALL 239
           Q   L      D+S         ++++ L  + G +    + F     RN G  ++ A+L
Sbjct: 232 QVHGLCFKTSFDSSCFVA-----SSLISLYSKCGVVEGGYKVFEEVKVRNLG--MWNAML 284

Query: 240 SAC--QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
            AC    H  R   +      + + PN      LL   S A
Sbjct: 285 IACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHA 325



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 1/146 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C        V+  V+ RN   WNA++          +  + F EM + G+  ++
Sbjct: 253 ISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNF 312

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   ++ A       ++G+    L+ + G +        LV +    G + +A  V   
Sbjct: 313 ITFLCLLYACSHAGLVEKGEHCFGLMKEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKE 372

Query: 123 MDERDLVS-WNSLLLGCAHHGYSREA 147
           M  +   S W +LL GC  HG +  A
Sbjct: 373 MPMQPTESVWGALLTGCRIHGNTELA 398



 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 45/89 (50%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            ++G Q+H  + K+G+++   V + L+  Y+     + + K+F S   +   +W+S++  
Sbjct: 23  LRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVISS 82

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
            A +     A++ F +M +  + PD  T 
Sbjct: 83  FAQNDLPLPALRFFRRMLRHGLLPDDHTL 111


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 186/304 (61%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S  D   V+  +  RN ++W++I+AGF      E+ L  F+  ++ G++ + 
Sbjct: 141 IDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQ 200

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F I+S++ A   ++   EG+Q+HA++ + G+  N FV + LV MYA CG+I +A  +F +
Sbjct: 201 FMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCN 260

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++++++V WN+++ G A H  S E + LFE+MQ+T ++PD  T++ VLSAC H G +DKG
Sbjct: 261 IEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKG 320

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF LM  + ++  P   HY+ +V +LGR G ++EA   +  M      S++ +LL++C
Sbjct: 321 RSYFDLMTREHNV-SPNVLHYSCMVDILGRGGLVHEAHELMTKMPFAATASMWGSLLASC 379

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN E+A  +AK + ++ P+    YVLL+N   A+  W++A   R  +    I K+ G
Sbjct: 380 RIHGNLELAEIAAKNLFEMEPDRGGNYVLLANTYAASKKWEEAAKARKSLKGSEILKERG 439

Query: 303 YSWV 306
            SW+
Sbjct: 440 KSWI 443



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 2/214 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        V+  +  R+ +SWN +I      G  E+A+  F EM++ G     FT+
Sbjct: 43  YSKCGLIRRACKVFDEIPERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTV 102

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S+V A          +Q+HA   K   D++VFV   L+ +YA CG+I DA+ VF  M E
Sbjct: 103 SSVVCACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPE 162

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ V+W+S++ G   +    E + LF + ++  ++ +      V+ AC     + +G Q 
Sbjct: 163 RNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQV 222

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
             ++        P     +A+V +  + G + EA
Sbjct: 223 HAIVCRTGF--GPNNFVASALVDMYAKCGSIEEA 254



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK  H  + ++G +++    N L+ MY+ CG I  A KVF  + ER +VSWN ++  C  
Sbjct: 17  GKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERSMVSWNIMIGTCVQ 76

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG--FIDKGLQYFYL 188
           +G   +A+ +F +MQ+        T   V+ AC   G  F  + L  F +
Sbjct: 77  NGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQLHAFAI 126


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 172/294 (58%), Gaps = 2/294 (0%)

Query: 13   LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
            L+  + Y  VR  N +SW+A+I GF + G GE+AL+ F  M+ A +  +  TI S++   
Sbjct: 1201 LEKTDEYPMVRP-NVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVC 1259

Query: 73   GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
              ++    G+++H  + +   D N+ V N L+ MY   G+  + N VF  ++ +DL+SWN
Sbjct: 1260 AELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWN 1319

Query: 133  SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
            +++ G   HG    A++ F+QM K   +PDG TF+ VLSAC HAG + +G + F  M  +
Sbjct: 1320 TMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKE 1379

Query: 193  ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
              +E P+ EHY  +V LLGRAG L EA   + SM   P   V+ ALL++C++H N E+A 
Sbjct: 1380 FRVE-PQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAE 1438

Query: 253  RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             +A ++ +L       Y+LLSN+  A+  W+D+  +R     +G++K PG SW+
Sbjct: 1439 ETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWI 1492



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 86/165 (52%)

Query: 26   NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
            N + WN+I+      G  E+AL+ +  MR+ G+  D FT   ++ A  ++   K  + +H
Sbjct: 937  NLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVH 996

Query: 86   ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
              + ++G+  N+ V N L+ MY   G ++DA KVF  M  R  VSWN+++ G A +    
Sbjct: 997  GHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCH 1056

Query: 146  EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
             A ++F  M    ++P+  T+  +LS+    G   + ++ F  MR
Sbjct: 1057 GASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMR 1101



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 98/191 (51%), Gaps = 4/191 (2%)

Query: 4    LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
            L Y    +S  F+ + S+    N ++W ++++     G   + ++ F  MR  GI     
Sbjct: 1051 LNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAE 1110

Query: 64   TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
             +  ++     ++ F EGK +H  + K G+++ +FV+N L+ +Y   G +N A  +F  +
Sbjct: 1111 ALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEI 1170

Query: 124  DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE----IKPDGTTFLVVLSACCHAGFI 179
              +++VSWN+L+   A  G+  EA  +F Q++KT+    ++P+  ++  V+      G  
Sbjct: 1171 KTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQG 1230

Query: 180  DKGLQYFYLMR 190
            ++ L+ F  M+
Sbjct: 1231 EEALELFRRMQ 1241



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 27/160 (16%)

Query: 82   KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER---DLVSWNSLLLGC 138
            +Q+H+ I   G   + F+  R+V +YA  G ++DA +VF         +L+ WNS+L   
Sbjct: 889  QQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRAN 948

Query: 139  AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-----------HAGFIDKGLQYFY 187
              HGY  EA++++ +M+K  +  DG TF +V+ AC            H   ++ G Q+  
Sbjct: 949  VAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNL 1008

Query: 188  LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
             + N+             ++G+ G+ G +++A      M+
Sbjct: 1009 HVGNE-------------LMGMYGKIGRMDDARKVFERMA 1035



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 2/151 (1%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            Y++  S  +   V+  +  ++ ISWN ++AG+   G GE A++ F +M + G + D  T 
Sbjct: 1294 YTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTF 1353

Query: 66   TSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             +++ A        EG+++   +I +   +  +     +V +    G + +A+KV  SM 
Sbjct: 1354 VAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMP 1413

Query: 125  -ERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
             E +   W +LL  C  H  +  A +   Q+
Sbjct: 1414 VEPNACVWGALLNSCRMHKNTEVAEETASQI 1444


>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
 gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
          Length = 516

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 109/291 (37%), Positives = 174/291 (59%), Gaps = 2/291 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID-YFTITSIVGAIGVI 75
           +++ S+  R   +W A+I+GF   G+   A+  F EMR+ G+ ID  F + ++VG    +
Sbjct: 98  DLFRSMPERGLFAWTALISGFVKAGNNTGAVGLFVEMRRDGVRIDDAFVLATVVGGAAEL 157

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +    G+Q+H     +G+ S++ V N LV MY+ C  I+ A +VF  +  RD+VSW ++L
Sbjct: 158 AALVLGRQLHGFAITLGFLSSMIVGNALVDMYSKCSDIHSAREVFGGIIVRDVVSWTTIL 217

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           +G A HG   E + L+++M    +KP+  TF+ ++ AC HAG + KG Q F  M+ +  +
Sbjct: 218 VGEAQHGRVEEVLALYDRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGI 277

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           +P   +HYT  + LL R+G+L+EAE  I +M   P  + + ALLSAC+ H + ++ +R A
Sbjct: 278 KPG-LQHYTCYLDLLSRSGYLSEAEELITTMPYEPDEASWGALLSACKKHNDTQMCLRVA 336

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             +L+L P DP+ Y+LLSNV      WD    +R +M    IRK+PGYSW+
Sbjct: 337 DNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKEPGYSWI 387



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G+Q+HA      Y ++  V++ L+ MY  CG   DA KVF S+  ++ V W +L+ G A 
Sbjct: 30  GRQLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYAS 89

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           +G + EA+ LF  M +  +      +  ++S    AG     +  F  MR D 
Sbjct: 90  NGCTGEAIDLFRSMPERGL----FAWTALISGFVKAGNNTGAVGLFVEMRRDG 138



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 80/169 (47%), Gaps = 6/169 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + V+  +  R+ +SW  I+ G    G  E+ L  +  M  AG+  +  T 
Sbjct: 189 YSKCSDIHSAREVFGGIIVRDVVSWTTILVGEAQHGRVEEVLALYDRMLLAGMKPNEVTF 248

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI--CGAINDANKVFSSM 123
             ++ A       ++G+Q+   + K  Y     +Q+   ++  +   G +++A ++ ++M
Sbjct: 249 VGLIYACSHAGLVQKGRQLFDSM-KREYGIKPGLQHYTCYLDLLSRSGYLSEAEELITTM 307

Query: 124 D-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             E D  SW +LL  C  H  ++  +++ + +   E++P   +  ++LS
Sbjct: 308 PYEPDEASWGALLSACKKHNDTQMCLRVADNL--LELRPKDPSTYILLS 354


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/335 (33%), Positives = 180/335 (53%), Gaps = 32/335 (9%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGS-------------------- 42
           I  Y + +   + + ++ ++  RN I+WNAI++G+ N G                     
Sbjct: 335 ITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLT 394

Query: 43  -----------GEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKI 91
                      G++ LK F +MR  G +   F     + A  V+   + G+Q+HA +  +
Sbjct: 395 VMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHL 454

Query: 92  GYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLF 151
           GY+S++ V N ++ MYA CG +  A  VF +M   DLVSWNS++     HG+  +A++LF
Sbjct: 455 GYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELF 514

Query: 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLG 211
           +QM K  + PD  TFL VL+AC HAG ++KG  YF  M     + P   +HY  +V L  
Sbjct: 515 DQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCE-DHYARMVDLFC 573

Query: 212 RAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVL 271
           RAG  + A   I+SM   PG  V++ALL+ C++HGN ++ + +A+++  L P +   YVL
Sbjct: 574 RAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVL 633

Query: 272 LSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           LSN+      W++   +R LM ++ +RK+P  SW+
Sbjct: 634 LSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWI 668



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 9/199 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y R D     + V+ ++      +WNA+I+G+ + G  ++AL    +MR  GI  D 
Sbjct: 230 ITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDD 289

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN----VFVQNRLVFMYAICGAINDANK 118
            T T+I+ A   +  F+ GKQ+HA I K   + N    + V N L+ +Y     +++A K
Sbjct: 290 ITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARK 349

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           +F +M  R++++WN++L G  + G   EA   FE+M    +     T  V++S     GF
Sbjct: 350 IFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL----LTLTVMISGLAQNGF 405

Query: 179 IDKGLQYFYLMRNDASLEP 197
            D+GL+ F  MR D   EP
Sbjct: 406 GDEGLKLFKQMRLDG-FEP 423



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 42/210 (20%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG-KQ 83
           R+ + +NA+I G+ + G G  AL+ F  MR+     D FT TS++ A+ +  G ++   Q
Sbjct: 110 RDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQ 169

Query: 84  MHALIFKIGYDS-NVFVQNRLVFMYAI--------CGAINDANKVFSSMDERDLVS---- 130
           MH  + K G    +  V N L+ +Y          C A+  A K+F  M +RD ++    
Sbjct: 170 MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTM 229

Query: 131 ---------------------------WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG 163
                                      WN+++ G  H G  +EA+ L  +M+   I+ D 
Sbjct: 230 ITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDD 289

Query: 164 TTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
            T+  ++SAC + G    G Q + Y+++N+
Sbjct: 290 ITYTTIISACANVGSFQMGKQVHAYILKNE 319



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVF--SSMDERDLVSWNSLLLGCAHHGYSREAVQLF 151
           + +   +  L+  Y   G +    ++F  + +  RD V +N+++ G AH+G    A++LF
Sbjct: 76  NPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELF 135

Query: 152 EQMQKTEIKPDGTTFLVVLSA 172
             M++ + +PD  TF  VLSA
Sbjct: 136 RAMRRDDFRPDDFTFTSVLSA 156


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 106/283 (37%), Positives = 177/283 (62%), Gaps = 2/283 (0%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           ++ I W AII+G    G  E+AL+ + EM +     D  T  S++ A  +++   +G+ +
Sbjct: 717 KSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMI 776

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER-DLVSWNSLLLGCAHHGY 143
           H+LIF +G DS+    + +V MYA CG +  + +VF  M  + D++SWNS+++G A +GY
Sbjct: 777 HSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGY 836

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY 203
           +  A+++F++M+ T I+PD  TFL VL+AC HAG + +G + F +M +   +  PR +H 
Sbjct: 837 AENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKI-VPRLDHC 895

Query: 204 TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263
             ++ LLGR GFL EAE FI+ ++  P   ++  LL AC++HG+     R+A+++++L P
Sbjct: 896 ACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEP 955

Query: 264 NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            + + YVLLSN+  A+  WD+   +R  M  +G+RK PG SW+
Sbjct: 956 ENSSPYVLLSNIYAASGNWDEVNSVRRAMREKGLRKLPGCSWI 998



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 102/182 (56%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C+     + V+ ++  RN + WNA++ G+   G   + +K FSEMR  G   D 
Sbjct: 391 INMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDE 450

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT TSI+ A   +   + G+Q+H+ I K  ++ N+FV+N LV MYA CGA+ +A + F  
Sbjct: 451 FTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEF 510

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  RD VSWN++++G        EA  +F +M    I PD  +   +LS C +   +++G
Sbjct: 511 IRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQG 570

Query: 183 LQ 184
            Q
Sbjct: 571 EQ 572



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 103/186 (55%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +       ++ +  R+ ++WN++++ +   GS EQ + CF  ++  G+  + FT 
Sbjct: 126 YAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTY 185

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ +   +     GKQ+H  + K+G++ N F +  L+ MY+ CG++ DA K+F ++ +
Sbjct: 186 AIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVD 245

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VSW +++ G    G   EA+++FE MQK  + PD   F+ V++AC   G +D     
Sbjct: 246 PDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDL 305

Query: 186 FYLMRN 191
           F  M N
Sbjct: 306 FVQMPN 311



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 95/171 (55%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D  +++  +   N ++WN +I+G    G   +A+  F  M + G+     T+ S++ AI 
Sbjct: 301 DACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIA 360

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +     G  +HA   K G +SNV+V + L+ MYA C  +  A KVF ++DER+LV WN+
Sbjct: 361 SLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNA 420

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +L G A +GY+ + ++LF +M+     PD  T+  +LSAC     ++ G Q
Sbjct: 421 MLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQ 471



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 123/273 (45%), Gaps = 35/273 (12%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +  + +  +  +R R+ +SWNAII G+      ++A   F  M   GI  D  ++
Sbjct: 495 YAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSL 554

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+     +   ++G+Q+H  + K G  + ++  + L+ MY  CGAI  A  VFS M  
Sbjct: 555 ASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPS 614

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC----------- 174
           R +VS N+++ G A +    EA+ LF++MQ   + P   TF  +L AC            
Sbjct: 615 RSVVSMNAIIAGYAQNDLV-EAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQI 673

Query: 175 HAGFIDKGLQY-----------FYL---MRNDASL------EPPRAEHYTAIVGLLGRAG 214
           H     +GL Y            Y+    + DA +       P     +TAI+    + G
Sbjct: 674 HCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNG 733

Query: 215 FLNEAESFINSMSRN---PGPSVYKALLSACQV 244
              EA      M RN   P  + + ++L AC +
Sbjct: 734 CSEEALQLYQEMHRNNARPDQATFASVLRACSI 766



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 37/182 (20%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C S +D + ++ +V   + +SW A+IAG+  +G  E+ALK F +M++ G+  D 
Sbjct: 224 IDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQ 283

Query: 63  FT-ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
              +T I   +G+                                    G ++DA  +F 
Sbjct: 284 VAFVTVITACVGL------------------------------------GRLDDACDLFV 307

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M   ++V+WN ++ G    G   EA+  F+ M KT +K   +T   VLSA      ++ 
Sbjct: 308 QMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNY 367

Query: 182 GL 183
           GL
Sbjct: 368 GL 369



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 58/106 (54%)

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           +  K +HA   K G+ S   + + +V +YA CG +  A K F+ +++RD+++WNS+L   
Sbjct: 98  RTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMY 157

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +  G   + +  F  +Q   + P+  T+ +VLS+C     ID G Q
Sbjct: 158 SRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQ 203


>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Glycine max]
          Length = 703

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 104/293 (35%), Positives = 175/293 (59%), Gaps = 1/293 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   ++ S+  ++  +WN+I+AG+  +G  E AL+ F +MR   I+ID++T ++++ +  
Sbjct: 352 DALRIFFSMDLKDCCTWNSILAGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRSCS 411

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            ++  + G+Q H L  K+G+D+N +V + L+FMY+ CG I DA K F +  + + + WNS
Sbjct: 412 DLATLQLGQQFHVLALKVGFDTNSYVGSSLIFMYSKCGIIEDARKSFEATSKDNAIVWNS 471

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G A HG    A+ LF  M++ ++K D  TF+ VL+AC H G +++G  +   M +D 
Sbjct: 472 IIFGYAQHGQGNIALDLFYMMKERKVKLDHITFVAVLTACSHNGLVEEGCNFIESMESDF 531

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            + PPR EHY   + L GRAG L +A + + +M   P   V K LL AC+  G+ E+A +
Sbjct: 532 GI-PPRQEHYACAIDLYGRAGHLKKATALVETMPFEPDAMVLKTLLGACRFCGDIELASQ 590

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            AK +L+L P +   YV+LS +      W +   +  +M  RG++K PG+SW+
Sbjct: 591 IAKILLELEPEEHCTYVILSEMYGRFKMWGEKASVTRMMRERGVKKVPGWSWI 643



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 6/253 (2%)

Query: 3   ILTYSRCDSSLDFQNVYS-SVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I  YS C S  D + V+  +V  R+ ++WN+++  +      + A K F +M+  G + D
Sbjct: 237 ITAYSECCSLQDAERVFDGAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPD 296

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICG--AINDANKV 119
            +T T IVGA  V      GK +H L+ K G D++V V N L+ MY       + DA ++
Sbjct: 297 AYTYTGIVGACSVQEHKTCGKCLHGLVIKRGLDNSVPVSNALISMYIRFNDRCMEDALRI 356

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F SMD +D  +WNS+L G    G S +A++LF QM+   I+ D  TF  V+ +C     +
Sbjct: 357 FFSMDLKDCCTWNSILAGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDLATL 416

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
             G Q F+++      +   +   ++++ +  + G + +A     + S++    V+ +++
Sbjct: 417 QLG-QQFHVLALKVGFD-TNSYVGSSLIFMYSKCGIIEDARKSFEATSKD-NAIVWNSII 473

Query: 240 SACQVHGNREIAV 252
                HG   IA+
Sbjct: 474 FGYAQHGQGNIAL 486



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 93/182 (51%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y++C        V+  +  R+ +SWNAII+ F + G  +   +    MR++    D 
Sbjct: 35  ITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDLDTTWQLLGAMRRSTHAFDS 94

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  SI+  +  +   K G+Q+H+++ K+G   NVF  + L+ MYA CG ++D   VF S
Sbjct: 95  RTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSALLDMYAKCGRVDDGYVVFQS 154

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER+ VSWN+L+   +  G    A  +   M+   ++ D  T   +L+   +A F    
Sbjct: 155 MPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDDGTVSPLLTLLDNAMFYKLT 214

Query: 183 LQ 184
           +Q
Sbjct: 215 MQ 216



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 1/169 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   V+ S+  RN +SWN ++A +  +G  + A    S M   G++ID  T+
Sbjct: 139 YAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDDGTV 198

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS-SMD 124
           + ++  +     +K   Q+H  I K G +    V N  +  Y+ C ++ DA +VF  ++ 
Sbjct: 199 SPLLTLLDNAMFYKLTMQLHCKIVKHGLELFNTVCNATITAYSECCSLQDAERVFDGAVL 258

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            RDLV+WNS+L     H     A ++F  MQ    +PD  T+  ++ AC
Sbjct: 259 CRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGAC 307



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%)

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H    K+G  ++ +  N L+  YA C  +N A++VF  M  RD VSWN+++   A  G  
Sbjct: 16  HCRAIKLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDL 75

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
               QL   M+++    D  TF  +L    + G +  G Q   +M
Sbjct: 76  DTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVM 120



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 103/289 (35%), Gaps = 50/289 (17%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    D +  + +    N I WN+II G+   G G  AL  F  M++  + +D+
Sbjct: 442 IFMYSKCGIIEDARKSFEATSKDNAIVWNSIIFGYAQHGQGNIALDLFYMMKERKVKLDH 501

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  +++ A       +EG                            C  I      F  
Sbjct: 502 ITFVAVLTACSHNGLVEEG----------------------------CNFIESMESDFGI 533

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              ++  +    L G A  G+ ++A  L E M     +PD      +L AC   G I+  
Sbjct: 534 PPRQEHYACAIDLYGRA--GHLKKATALVETM---PFEPDAMVLKTLLGACRFCGDIELA 588

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            Q   ++     LEP     Y  +  + GR     E  S +  M R  G           
Sbjct: 589 SQIAKIL---LELEPEEHCTYVILSEMYGRFKMWGEKAS-VTRMMRERGVK--------- 635

Query: 243 QVHGNREIAVRSAKRVLDL----WPNDPAIYVLLSNVSKATDCWDDAGD 287
           +V G   I V++     +      P    IY+LL  +++    +D+  D
Sbjct: 636 KVPGWSWIEVKNNVHAFNAEDHSHPQCEEIYILLQQLNEGIKLFDNFVD 684


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 110/293 (37%), Positives = 180/293 (61%), Gaps = 1/293 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +  R++ISW++++ G+ + G  ++AL+ F +M++       F ++S++ A  
Sbjct: 246 DARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACS 305

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            I    +G+ +HA + +     +  +   L+ MYA CG ++   +VF  M ER++ +WN+
Sbjct: 306 NIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNA 365

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G A HG + +A++LF ++Q+  +KP+G T + VL+AC HAGF+DKGL+ F  MR   
Sbjct: 366 MIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFY 425

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            ++ P  EHY  +V LLGR+G  +EAE  INSM   P  +V+ ALL AC++HGN ++A R
Sbjct: 426 GVD-PELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAER 484

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             K +L+L P +   YVLLSN+      +DD   IR LM +RGI+  PG S V
Sbjct: 485 VGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIV 537



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 134/335 (40%), Gaps = 74/335 (22%)

Query: 11  SSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYFTITS 67
           S+ DF   V+SS+   N   WN +I G        +A+  +  M    ID   + FT  +
Sbjct: 81  SNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV---IDARPNKFTYPT 137

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGY------------------------------DSNV 97
           +  A  V    +EG+Q+H  + K G                               +S+V
Sbjct: 138 LFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDV 197

Query: 98  FVQNRLVFMYAICGAIN-------------------------------DANKVFSSMDER 126
              N ++  Y  CG +                                DA K+F  M ER
Sbjct: 198 VCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSER 257

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQY 185
           D +SW+S++ G    G  +EA+++F+QMQ+ E +P       VL+AC + G ID+G   +
Sbjct: 258 DEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVH 317

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            YL RN   L+   A   TA++ +  + G L+        M        + A++    +H
Sbjct: 318 AYLKRNSIKLD---AVLGTALLDMYAKCGRLDMGWEVFEEMKERE-IFTWNAMIGGLAIH 373

Query: 246 GNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
           G  E A+    ++ +  + PN   +  +L+  + A
Sbjct: 374 GRAEDALELFSKLQEGRMKPNGITLVGVLTACAHA 408


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 111/306 (36%), Positives = 181/306 (59%), Gaps = 3/306 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y++  +      ++  +  ++ ++W A++ G+       +AL+ F  M+ AG+  D 
Sbjct: 213 IVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDE 272

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGY--DSNVFVQNRLVFMYAICGAINDANKVF 120
            T+  ++ A   +   K    +  +  + G+   SNV V + L+ MYA CG++ DA KVF
Sbjct: 273 VTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVF 332

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M+ER++ S++S+++G A HG +  A++LF++M KTEIKP+  TF+ VL+AC HAG ++
Sbjct: 333 ERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVE 392

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +G Q F +M     + P   +HY  +V LLGRAG L EA + +  M  NP   V+ ALL 
Sbjct: 393 QGQQLFAMMEECHGVAPSE-DHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLG 451

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           AC++HGN ++A  +A  + +L PN    Y+LLSN+  +   WDD   +R LM  +G++K 
Sbjct: 452 ACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKN 511

Query: 301 PGYSWV 306
           PG SWV
Sbjct: 512 PGCSWV 517



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 34/207 (16%)

Query: 5   TYSRCDSSLDF--QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           T ++ D  +D   + V+  V   N   W A+I G+   G   +++  ++ MR+ GI    
Sbjct: 80  TLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVS 139

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFS 121
           FT T+++ A         G+Q+H     IG + S+++V N L+ MY  CG +   ++VF 
Sbjct: 140 FTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFD 199

Query: 122 SMDERDLVSWNSLLL-------------------------------GCAHHGYSREAVQL 150
            M +RD++SW SL++                               G A +   REA+++
Sbjct: 200 EMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEV 259

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAG 177
           FE+MQ   +K D  T + V+SAC   G
Sbjct: 260 FERMQAAGVKTDEVTLVGVISACAQLG 286



 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 2/105 (1%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND--ANKVFSSMDERDLVSWNSLLLGCA 139
           KQ+HA IF+ G +   FV  +L+          D     VF  ++  +   W +L+ G A
Sbjct: 56  KQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYA 115

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             G   E+V L+  M++  I P   TF  +L AC  A  ++ G Q
Sbjct: 116 LQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQ 160


>gi|222616388|gb|EEE52520.1| hypothetical protein OsJ_34732 [Oryza sativa Japonica Group]
          Length = 462

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 177/302 (58%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID-YFT 64
           Y+    S +   ++ S+  RN  +W A+I+G  N G    A++ F EMR+ G+ ID  F 
Sbjct: 33  YASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFV 92

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++ ++G    ++ F  G+Q+H    ++G+ SN+ V N L+ MY+ C  I  A +VF  + 
Sbjct: 93  LSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGIT 152

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD++SW ++++G A HG + EA+ L+++M     KP+  TF+ ++ AC HAG + KG Q
Sbjct: 153 FRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQ 212

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M+N+  +  PR +HYT  + LL R+G L EAE  + +M   P  + + ALLSAC  
Sbjct: 213 LFESMKNEYGI-TPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTK 271

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           + + E+ +R + ++L+L P D + Y+LLSNV      WD    +R  M    IRK+PGYS
Sbjct: 272 YKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYS 331

Query: 305 WV 306
           W+
Sbjct: 332 WI 333



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
           MY  CG+ +D  KVF SM  ++ V W +L+ G A +G S EA+QLF  M    +      
Sbjct: 1   MYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNL----FA 56

Query: 166 FLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           +  ++S   + G     ++ F  MR D 
Sbjct: 57  WTALISGLVNTGESVGAVELFVEMRRDG 84



 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           N  V   LV  YA  G   +A ++F SM  R+L +W +L+ G  + G S  AV+LF +M+
Sbjct: 22  NSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMR 81

Query: 156 KTEIKPDGTTFLVVL 170
           +  ++ D    L ++
Sbjct: 82  RDGVRIDDAFVLSIV 96


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 176/301 (58%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC+   D +  +  +  +N I+WN +IAG+    S E +L  F +M   G   + FT 
Sbjct: 256 YCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSDSSE-SLSLFFQMGSEGYKPNCFTF 314

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI  A   ++    G+Q+H  I + G+D NV + N L+ MYA CG+I+D++K+F  M  
Sbjct: 315 TSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPG 374

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDLVSW ++++G   HGY +EAV+LF++M ++ I+PD   F+ VL  C HAG +DKGL+Y
Sbjct: 375 RDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKY 434

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D ++ P + E Y  +V LLGRAG + EA   + +M   P  SV+ ALL AC+ +
Sbjct: 435 FRSMLEDYNINPDQ-EIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGALLGACKAY 493

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
               +   +A+RVLD  PN    Y+LLS +  A   W +   +R LM     +K+ G SW
Sbjct: 494 KLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAAEGKWGEFAKMRKLMKGMNKKKEVGKSW 553

Query: 306 V 306
           +
Sbjct: 554 I 554



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 1/178 (0%)

Query: 7   SRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT 66
           + C +  D  +V++ +  +  +SW  +IAGF + G G   L  F +M    +  + F+ +
Sbjct: 156 ASCATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFS 215

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
               A   IS +  GKQ+HA + K G   +  V N ++ MY  C  + DA + F  + E+
Sbjct: 216 IAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEK 275

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +L++WN+L+ G      S E++ LF QM     KP+  TF  + +AC +   +  G Q
Sbjct: 276 NLITWNTLIAG-YERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQ 332



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 1/158 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           N+++ +  R+ ++W A+I GF +     QA   FSEM ++ +  + FT++S++ A   + 
Sbjct: 64  NLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMK 123

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI-CGAINDANKVFSSMDERDLVSWNSLL 135
               G   H+L  K G D +V+VQN L+ MYA  C  ++DA  VF+ +  +  VSW +L+
Sbjct: 124 ALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLI 183

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            G  H G     +  F QM   ++ P+  +F +   AC
Sbjct: 184 AGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARAC 221



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 38/63 (60%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G   +A  +F+ + ERD+V+W ++++G     +  +A  +F +M ++E++P+  T   VL
Sbjct: 57  GLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVL 116

Query: 171 SAC 173
            AC
Sbjct: 117 KAC 119


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 183/307 (59%), Gaps = 7/307 (2%)

Query: 6   YSRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDID 61
           YS+C S    + +++S+  R RN ++W  +I G+   G    ALK FSEM  +   +  +
Sbjct: 452 YSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPN 511

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIG-YDSNV-FVQNRLVFMYAICGAINDANKV 119
            +TI+ I+ A   +S  + GKQ+HA + +   Y+S+V FV N L+ MY+ CG ++ A  V
Sbjct: 512 AYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNV 571

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F SM +R+ VSW S++ G   HG  +EA+ +F++MQK    PD  +FLV+L AC H+G +
Sbjct: 572 FDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMV 631

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           D+GL YF +MR+D  +    A+HY  ++ LL R+G L++A   I  M   P  +++ ALL
Sbjct: 632 DQGLDYFDIMRSDYGV-IASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALL 690

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           SAC+VH N E+A  +  +++ +   +   Y L+SN+      W D   IR LM   GI+K
Sbjct: 691 SACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKK 750

Query: 300 KPGYSWV 306
           +PG SWV
Sbjct: 751 RPGCSWV 757



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 137/286 (47%), Gaps = 39/286 (13%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F+N+       + I+W+A+IAG+   G G++AL  F +M   G + +  TI S++ A   
Sbjct: 348 FKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACAS 407

Query: 75  ISGFKEGKQMHALIFK------------IGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +    +G + HA   K             G   ++ V N L+ MY+ C +   A  +F+S
Sbjct: 408 LGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNS 467

Query: 123 MD--ERDLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGF 178
           +   ER++V+W  ++ G A +G S +A++LF +M  +   + P+  T   +L AC H   
Sbjct: 468 IPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSS 527

Query: 179 IDKGLQ-YFYLMRNDASLEPPRAEHYTA--IVGLLGRAGFLNEAESFINSMSRNPGPSVY 235
           +  G Q + Y+ R+    E   + ++ A  ++ +  + G ++ A +  +SM +    S +
Sbjct: 528 LRMGKQIHAYVTRHH---EYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVS-W 583

Query: 236 KALLSACQVHGNREIAVRSAKRVLDLW---------PNDPAIYVLL 272
            +++S   +HG         K  LD++         P+D +  VLL
Sbjct: 584 TSMMSGYGMHGR-------GKEALDIFDKMQKAGFVPDDISFLVLL 622



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 9/196 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTR---NQISWNAIIAGFCNLGSGEQALKCFSEM------ 53
           +  YSR  S  D   V+  +  +   + ISWN+I+A      +   AL  FSEM      
Sbjct: 191 VAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHE 250

Query: 54  RQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113
           +      D  +I +I+ A   +    + K++H+   + G  ++ FV N L+  YA CG++
Sbjct: 251 KATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSM 310

Query: 114 NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            DA  VF+ M+ +D+VSWN+++ G    G    A +LF+ M+K  I  D  T+  V++  
Sbjct: 311 KDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGY 370

Query: 174 CHAGFIDKGLQYFYLM 189
              G+  + L  F  M
Sbjct: 371 AQRGYGQEALDTFQQM 386



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 13/234 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           + +Y  C ++ D  +V   V     + WN ++      G  ++A+     M +AG   D+
Sbjct: 90  VASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDH 149

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+   + A G +  ++ G   H LI   G++SNVFV N LV MY+  G++ DA+ VF  
Sbjct: 150 FTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDE 209

Query: 123 MDER---DLVSWNSLLLGCAHHGYSREAVQLFEQM------QKTEIKPDGTTFLVVLSAC 173
           +  +   D++SWNS++         R A+ LF +M      + T  + D  + + +L AC
Sbjct: 210 ITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPAC 269

Query: 174 CHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
                + +  + + Y +RN    +   A    A++    + G + +A +  N M
Sbjct: 270 ASLKALPQTKEIHSYAIRNGTFAD---AFVCNALIDTYAKCGSMKDAVNVFNVM 320


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 176/301 (58%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC+   D +  +  +  +N I+WN +IAG+    S E +L  F +M   G   + FT 
Sbjct: 256 YCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSDSSE-SLSLFFQMGSEGYKPNCFTF 314

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI  A   ++    G+Q+H  I + G+D NV + N L+ MYA CG+I+D++K+F  M  
Sbjct: 315 TSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPG 374

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDLVSW ++++G   HGY +EAV+LF++M ++ I+PD   F+ VL  C HAG +DKGL+Y
Sbjct: 375 RDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKY 434

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D ++ P + E Y  +V LLGRAG + EA   + +M   P  SV+ ALL AC+ +
Sbjct: 435 FRSMLEDYNINPDQ-EIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGALLGACKAY 493

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
               +   +A+RVLD  PN    Y+LLS +  A   W +   +R LM     +K+ G SW
Sbjct: 494 KLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAAEGKWGEFAKMRKLMKGMNKKKEVGKSW 553

Query: 306 V 306
           +
Sbjct: 554 I 554



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 1/178 (0%)

Query: 7   SRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT 66
           + C +  D  +V++ +  +  +SW  +IAGF + G G   L  F +M    +  + F+ +
Sbjct: 156 ASCATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFS 215

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
               A   IS +  GKQ+HA + K G   +  V N ++ MY  C  + DA + F  + E+
Sbjct: 216 IAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEK 275

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +L++WN+L+ G      S E++ LF QM     KP+  TF  + +AC +   +  G Q
Sbjct: 276 NLITWNTLIAG-YERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQ 332



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 1/158 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           N+++ +  R+ ++W A+I GF +     QA   FSEM ++ +  + FT++S++ A   + 
Sbjct: 64  NLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMK 123

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI-CGAINDANKVFSSMDERDLVSWNSLL 135
               G   H+L  K G D +V+VQN L+ MYA  C  ++DA  VF+ +  +  VSW +L+
Sbjct: 124 ALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLI 183

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            G  H G     +  F QM   ++ P+  +F +   AC
Sbjct: 184 AGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARAC 221



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 38/63 (60%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G   +A  +F+ + ERD+V+W ++++G     +  +A  +F +M ++E++P+  T   VL
Sbjct: 57  GLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVL 116

Query: 171 SAC 173
            AC
Sbjct: 117 KAC 119


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 178/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C+S    + ++  +R ++ +SWN++I+G+   G   QAL+ F  M   G   D  T+
Sbjct: 273 YCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTV 332

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   IS  + G  + + + K GY  NV V   L+ MYA CG++  A +VF  M E
Sbjct: 333 ISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPE 392

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++L +   ++ G   HG  REA+ +F +M    + PD   F  VLSAC H+G +D+G + 
Sbjct: 393 KNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEI 452

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           FY M  D S+E PR  HY+ +V LLGRAG+L+EA + I +M   P   V+ ALLSAC++H
Sbjct: 453 FYKMTRDYSVE-PRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLH 511

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++AV SA+++ +L P+  + YV LSN+  A   W+D  ++R L+  R +RK P YS+
Sbjct: 512 RNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSF 571

Query: 306 V 306
           V
Sbjct: 572 V 572



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 87/159 (54%), Gaps = 3/159 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  R+  SWN +++GF   G    A + F +MR+ G   D  T+ +++ A G +  
Sbjct: 181 VFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMD 240

Query: 78  FKEGKQMHALIFKIGYDSNV---FVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
            K GK++H  + + G    V   F+ N ++ MY  C +++ A K+F  +  +D+VSWNSL
Sbjct: 241 LKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSL 300

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           + G    G + +A++LF +M      PD  T + VL+AC
Sbjct: 301 ISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAAC 339



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 99/190 (52%), Gaps = 1/190 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C      Q+++  +  +N   WN++I G+    S  +AL  + +M   G   D FT 
Sbjct: 68  YAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTY 127

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A G +   + G+++HAL+   G + +V+V N ++ MY   G +  A  VF  M  
Sbjct: 128 PFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLV 187

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RDL SWN+++ G   +G +R A ++F  M++     D TT L +LSAC     +  G + 
Sbjct: 188 RDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEI 247

Query: 185 YFYLMRNDAS 194
           + Y++RN  S
Sbjct: 248 HGYVVRNGES 257



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 83  QMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           Q+HA +   G    N ++  +L   YA+CG +  A  +F  +  ++   WNS++ G A +
Sbjct: 43  QLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACN 102

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
                A+ L+ +M     KPD  T+  VL AC
Sbjct: 103 NSPSRALFLYLKMLHFGQKPDNFTYPFVLKAC 134


>gi|125550837|gb|EAY96546.1| hypothetical protein OsI_18451 [Oryza sativa Indica Group]
          Length = 591

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 172/302 (56%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            YS+C    D   V+ S R  +++    I+ GF   G  E+A + F+EM  AG +ID  T
Sbjct: 267 VYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENT 326

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +++++GA G  + F  GKQ+HAL+ K  +  N +V N LV MY+ CG + ++ +VF  M 
Sbjct: 327 VSTVLGAFGASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVQVFDEMP 386

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            ++ VSWNS++   A HG+  E  QLFE M+    KP   TFL +L AC H G   KGL+
Sbjct: 387 SKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLE 446

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
               M +   +  PR EHY  +V +LGRAG L++A+SFI          +++AL+ AC  
Sbjct: 447 ILNSMSSQYGV-LPRMEHYACVVDMLGRAGLLDDAKSFIEDGPFTDSALLWQALMGACSF 505

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN E+   +A+++L L P+  A YVLLSN+  +   WDD   +   M   G+RK  G S
Sbjct: 506 HGNSEVGKHAAEKLLLLDPSCTAAYVLLSNIYSSEGRWDDRAKVMKRMSEMGLRKDTGKS 565

Query: 305 WV 306
           W+
Sbjct: 566 WI 567



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 7/187 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFT 64
           Y+RC    D   V+  +R R+ +SWN++IA   + G+G+ AL  F  M R      D  T
Sbjct: 67  YARCGRREDAARVFDEMRVRDAVSWNSLIAA--SRGAGD-ALALFRRMLRSDARACDRAT 123

Query: 65  ITSIVG--AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+++   A    +       +H L+   G+++ V V N LV  Y  CG+   A +VF  
Sbjct: 124 FTTVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHG 183

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E+++++W +++ G A     +E+  LF QM +T +  +  T+   L AC  +    +G
Sbjct: 184 MAEKNVITWTAMISGMARAELYKESFSLFGQMIRT-VDANNATYSCTLLACARSLAAREG 242

Query: 183 LQYFYLM 189
            Q   L+
Sbjct: 243 QQVHGLV 249



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 1/170 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y  C S    + V+  +  +N I+W A+I+G       +++   F +M +  +D + 
Sbjct: 165 VTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQMIRT-VDANN 223

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T +  + A       +EG+Q+H L+ K G+++++ V++ L+ +Y+ CG + DA  VF S
Sbjct: 224 ATYSCTLLACARSLAAREGQQVHGLVVKAGFEADLHVESGLMDVYSKCGLMEDALTVFRS 283

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
             E D V    +L+G A +G   +A +LF +M     + D  T   VL A
Sbjct: 284 CREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSTVLGA 333



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 15/130 (11%)

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFK----------IGYDSNVFVQ-NRLVFMYA 108
           ++Y   + ++ + G     + G  +HA + K            +  +V V  N LV MYA
Sbjct: 9   LNYARFSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNALVSMYA 68

Query: 109 ICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFL 167
            CG   DA +VF  M  RD VSWNSL+      G   +A+ LF +M +++ +  D  TF 
Sbjct: 69  RCGRREDAARVFDEMRVRDAVSWNSLIAASRGAG---DALALFRRMLRSDARACDRATFT 125

Query: 168 VVLSACCHAG 177
            VLS C  AG
Sbjct: 126 TVLSECARAG 135


>gi|297794367|ref|XP_002865068.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310903|gb|EFH41327.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 659

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 181/299 (60%), Gaps = 1/299 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C        ++  +R R+ I+W+ II G+   G GE+   CFS MRQAG       +
Sbjct: 308 YSTCGKLDSASVLFQGMRRRDIITWSTIIGGYSQAGLGEEVFMCFSWMRQAGPKPTDPAL 367

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++   G ++  ++G+Q+HAL   +G + N  +++ L+ MY+ CG+I +A+K+F   D 
Sbjct: 368 ASLLSVSGTMAVLEQGRQVHALALYLGLEQNSTIRSALINMYSKCGSIEEASKIFEETDT 427

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VS  +++ G A HG ++EA+ LFE+  K  ++PD  TF+ VL+AC H+G +D G +Y
Sbjct: 428 DDIVSLTAMINGYAEHGNTKEAIDLFEKSLKVGLRPDTVTFISVLTACSHSGQLDLGFRY 487

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM+++ ++ P + EHY  +V LL RAG L++AE  IN M       V+  LL+AC+  
Sbjct: 488 FNLMQDEYNIRPVK-EHYGCMVDLLCRAGRLSDAEKMINEMPWKKDDVVWTTLLNACKAK 546

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           G+ E   R+A+R+L+L P     +V L+N+  +T   ++A  +R  M ++G+ K PG+S
Sbjct: 547 GDTERGRRAAERILELDPTSETAFVTLANIYSSTGKLEEAAHVRKAMKSKGVIKVPGWS 605



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 76/138 (55%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++ ++ RN ++W AI++G    G  ++ L  FSEM ++    D F   + + A   +  
Sbjct: 144 IFTEMQFRNTVTWTAIVSGMVEAGRHKEGLTYFSEMSRSKGLSDDFAFATALKACARLRQ 203

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K GK++H  +   G D+++ V N L+ MY  CG ++D   +F SM ERD+ SW +L+  
Sbjct: 204 VKYGKEIHTHVIVRGSDASLCVVNSLINMYTECGEMHDGVHLFESMSERDVFSWTTLIDA 263

Query: 138 CAHHGYSREAVQLFEQMQ 155
            +  G   +AV  F +++
Sbjct: 264 YSQMGQEEKAVATFLKIE 281



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 10/241 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFTITSIVGAIGV 74
           ++++  +  R+ +SW AII G+    +  +AL  FS +     +  D   ++  + A G 
Sbjct: 40  RHLFDQMPHRDIVSWTAIINGYVTAANSFEALNLFSALLFDPAVSPDTSVLSVALKACGQ 99

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
            S    G+ +HA  FK    ++VFV   L+ MY   G I+   ++F+ M  R+ V+W ++
Sbjct: 100 SSNIGYGESLHAYAFKTSLLTSVFVGTNLLNMYMRTGKIDKGCRIFTEMQFRNTVTWTAI 159

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ---YFYLMRN 191
           + G    G  +E +  F +M +++   D   F   L AC     +  G +   +  +  +
Sbjct: 160 VSGMVEAGRHKEGLTYFSEMSRSKGLSDDFAFATALKACARLRQVKYGKEIHTHVIVRGS 219

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
           DASL         +++ +    G +++      SMS     S +  L+ A    G  E A
Sbjct: 220 DASLCV-----VNSLINMYTECGEMHDGVHLFESMSERDVFS-WTTLIDAYSQMGQEEKA 273

Query: 252 V 252
           V
Sbjct: 274 V 274



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 107/252 (42%), Gaps = 39/252 (15%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C    D  +++ S+  R+  SW  +I  +  +G  E+A+  F       + I+ F  
Sbjct: 233 YTECGEMHDGVHLFESMSERDVFSWTTLIDAYSQMGQEEKAVATF-------LKIEIFRR 285

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS                     F +G   ++ V N ++ MY+ CG ++ A+ +F  M  
Sbjct: 286 TS-----------------QWTYFCLG--DSLSVSNSMMKMYSTCGKLDSASVLFQGMRR 326

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+++W++++ G +  G   E    F  M++   KP       +LS       +++G Q 
Sbjct: 327 RDIITWSTIIGGYSQAGLGEEVFMCFSWMRQAGPKPTDPALASLLSVSGTMAVLEQGRQV 386

Query: 186 FYL-----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
             L     +  ++++        +A++ +  + G + EA         +   S+  A+++
Sbjct: 387 HALALYLGLEQNSTIR-------SALINMYSKCGSIEEASKIFEETDTDDIVSL-TAMIN 438

Query: 241 ACQVHGNREIAV 252
               HGN + A+
Sbjct: 439 GYAEHGNTKEAI 450



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 82/211 (38%), Gaps = 58/211 (27%)

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSAC- 173
           A  +F  M  RD+VSW +++ G      S EA+ LF  +     + PD +   V L AC 
Sbjct: 39  ARHLFDQMPHRDIVSWTAIINGYVTAANSFEALNLFSALLFDPAVSPDTSVLSVALKACG 98

Query: 174 ----------CHA------------------------GFIDKGLQYFYLM--RNDASLEP 197
                      HA                        G IDKG + F  M  RN  +   
Sbjct: 99  QSSNIGYGESLHAYAFKTSLLTSVFVGTNLLNMYMRTGKIDKGCRIFTEMQFRNTVT--- 155

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS---VYKALLSAC----QVHGNREI 250
                +TAIV  +  AG   E  ++ + MSR+ G S    +   L AC    QV   +EI
Sbjct: 156 -----WTAIVSGMVEAGRHKEGLTYFSEMSRSKGLSDDFAFATALKACARLRQVKYGKEI 210

Query: 251 AVRSAKRVLDLWPNDPAIYVLLSNVSKATDC 281
                 R      +D ++ V+ S ++  T+C
Sbjct: 211 HTHVIVR-----GSDASLCVVNSLINMYTEC 236


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 108/283 (38%), Positives = 178/283 (62%), Gaps = 2/283 (0%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           ++ + W A+I+G       + AL  + EMR   I  D  T  +++ A  ++S   +G+++
Sbjct: 585 KSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREI 644

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-DERDLVSWNSLLLGCAHHGY 143
           H+LIF  G+D +    + LV MYA CG +  + +VF  +  ++D++SWNS+++G A +GY
Sbjct: 645 HSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGY 704

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY 203
           ++ A+++F++M ++ I PD  TFL VL+AC HAG++ +G Q F +M N   +EP R +HY
Sbjct: 705 AKCALKVFDEMTQSCITPDDVTFLGVLTACSHAGWVYEGRQIFDVMVNYYGIEP-RVDHY 763

Query: 204 TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263
             +V LLGR GFL EAE FI+ +   P   ++  LL AC++HG+ +   R+AK++++L P
Sbjct: 764 ACMVDLLGRWGFLKEAEEFIDKLEVEPNAMIWANLLGACRIHGDEKRGQRAAKKLIELEP 823

Query: 264 NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
              + YVLLSN+  A+  WD+A  +R  M  + I+K PG SW+
Sbjct: 824 QSSSPYVLLSNMYAASGNWDEARSLRRTMIKKDIQKIPGCSWI 866



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 128/261 (49%), Gaps = 4/261 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D + V+ ++  +N I WNA++  +   G     ++ F +M   GI  D FT 
Sbjct: 262 YGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTY 321

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI+         + G+Q+H+ I K  + SN+FV N L+ MYA  GA+ +A K F  M  
Sbjct: 322 TSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTY 381

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD +SWN++++G         A  LF +M    I PD  +   +LSAC +   ++ G Q 
Sbjct: 382 RDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAG-QQ 440

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ +     LE       ++++ +  + G + +A    +SM      SV  AL++   + 
Sbjct: 441 FHCLSVKLGLETNLFAG-SSLIDMYSKCGDIKDAHKTYSSMPERSVVSV-NALIAGYALK 498

Query: 246 GNRE-IAVRSAKRVLDLWPND 265
             +E I +    ++L L P++
Sbjct: 499 NTKESINLLHEMQILGLKPSE 519



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 107/209 (51%), Gaps = 8/209 (3%)

Query: 22  VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG 81
           +  RN ++WN +I+G       E+AL  F +M + G+     T+ S++ AI  ++    G
Sbjct: 177 IPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHG 236

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
             +HA   K G++S+++V + L+ MY  C   +DA +VF ++ +++++ WN++L   + +
Sbjct: 237 LLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQN 296

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAE 201
           G+    ++LF  M    I PD  T+  +LS C    +++ G Q      + A ++     
Sbjct: 297 GFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQL-----HSAIIKKRFTS 351

Query: 202 HY---TAIVGLLGRAGFLNEAESFINSMS 227
           +     A++ +  +AG L EA      M+
Sbjct: 352 NLFVNNALIDMYAKAGALKEAGKHFEHMT 380



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 3/170 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D    YSS+  R+ +S NA+IAG+  L + ++++    EM+  G+     T 
Sbjct: 464 YSKCGDIKDAHKTYSSMPERSVVSVNALIAGYA-LKNTKESINLLHEMQILGLKPSEITF 522

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYD-SNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            S++      +    G Q+H  I K G    + F+   L+ MY     + DAN +FS   
Sbjct: 523 ASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFS 582

Query: 125 E-RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
             + +V W +L+ G   +  S  A+ L+ +M+   I PD  TF+ VL AC
Sbjct: 583 SLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQAC 632



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 8/213 (3%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN  + G  +  S E+ L+ ++    +G   D FT    + A   +     G+ +H+ + 
Sbjct: 16  WNWRVQGTKHYSS-ERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVI 74

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL--VSWNSLLLGCAHHGYSREA 147
           K G +S  F Q  L+ +YA C ++  A  +F+S     L  VSW +L+ G    G   EA
Sbjct: 75  KSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEA 134

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           + +F++M+ + + PD    + VL+A    G +D   Q F  M     +       +  ++
Sbjct: 135 LHIFDKMRNSAV-PDQVALVTVLNAYISLGKLDDACQLFQQM----PIPIRNVVAWNVMI 189

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
               +     EA +F + MS++   S    L S
Sbjct: 190 SGHAKTAHYEEALAFFHQMSKHGVKSSRSTLAS 222



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 5/169 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQ-ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C        V+  + T+   ISWN++I GF   G  + ALK F EM Q+ I  D  T
Sbjct: 667 YAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVT 726

Query: 65  ITSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
              ++ A        EG+Q+   ++   G +  V     +V +    G + +A +    +
Sbjct: 727 FLGVLTACSHAGWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKL 786

Query: 124 D-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           + E + + W +LL  C  HG  +   +  +++   E++P  ++  V+LS
Sbjct: 787 EVEPNAMIWANLLGACRIHGDEKRGQRAAKKL--IELEPQSSSPYVLLS 833


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 113/307 (36%), Positives = 187/307 (60%), Gaps = 4/307 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDI 60
           ++ YS+C    D   ++  +   +N +SW AII+G+   G  ++A+  F +MR + G++ 
Sbjct: 336 MVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEP 395

Query: 61  DYFTITSIVGAIGV-ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           + FT +S++ A     +  ++GKQ H+   K G+ + + V + LV MYA  G I  AN+V
Sbjct: 396 NEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEV 455

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F    +RDLVSWNS++ G A HG  ++++++FE+M+   ++ DG TF+ V+SAC HAG +
Sbjct: 456 FKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLV 515

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           ++G +YF LM  D  +  P  EHY+ +V L  RAG L +A   IN M    G ++++ LL
Sbjct: 516 NEGQRYFDLMVKDYHI-VPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLL 574

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           +AC+VH N ++   +A++++ L P D A YVLLSN+      W +   +R LM  + ++K
Sbjct: 575 AACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKK 634

Query: 300 KPGYSWV 306
           + GYSW+
Sbjct: 635 EAGYSWI 641



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 99/168 (58%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y + +S  D + V+  +R +N +SW +++AG+   G  EQALK FS+M+  GI  + FT 
Sbjct: 137 YMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTF 196

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++G +      ++G Q+H ++ K G DS +FV N +V MY+    ++DA  VF SM+ 
Sbjct: 197 AAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMEN 256

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           R+ VSWNS++ G   +G   EA +LF +M+   +K   T F  V+  C
Sbjct: 257 RNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLC 304



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 99/183 (54%), Gaps = 3/183 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+     D + V+ S+  RN +SWN++IAGF   G   +A + F  MR  G+ +     
Sbjct: 238 YSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIF 297

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++     I      KQ+H  + K G D ++ ++  L+  Y+ C  I+DA K+F  M  
Sbjct: 298 ATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHG 357

Query: 126 -RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCH-AGFIDKG 182
            +++VSW +++ G   +G +  A+ LF QM++ E ++P+  TF  VL+AC      +++G
Sbjct: 358 VQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQG 417

Query: 183 LQY 185
            Q+
Sbjct: 418 KQF 420



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           N ++  F      ++AL  F  +R++G   D  +++ ++   G +     GKQ+H    K
Sbjct: 61  NHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIK 120

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
            G+  +V V   LV MY    ++ D  +VF  M  +++VSW SLL G   +G + +A++L
Sbjct: 121 CGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKL 180

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           F QMQ   IKP+  TF  VL      G ++KG+Q
Sbjct: 181 FSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ 214


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 114/310 (36%), Positives = 185/310 (59%), Gaps = 7/310 (2%)

Query: 3    ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
            I  Y+R  +  D Q V+S +  +N I+WN +IA +   G  E+AL+ F  +++  +   +
Sbjct: 1067 ITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTH 1126

Query: 63   FTITSIVGAIGVISGFKEGKQMHALIFKIGY------DSNVFVQNRLVFMYAICGAINDA 116
            +T  +++ A G ++  + G+Q H  + K G+      +S+VFV N LV MY   G+I+D 
Sbjct: 1127 YTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDG 1186

Query: 117  NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
             KVF  M  RD VSWN++++G A +G +++A+ LFE+M  ++  PD  T + VLSAC H+
Sbjct: 1187 AKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHS 1246

Query: 177  GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYK 236
            G +++G +YF  M  D  + P + +HYT ++ LLGRAG L E E  I  MS  P   ++ 
Sbjct: 1247 GLVEEGRRYFRSMTEDHGIIPSQ-DHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWA 1305

Query: 237  ALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
            +LL +C++H N E+   +A ++ +L P +   YVLLSN+      W D   +R+ M +RG
Sbjct: 1306 SLLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRG 1365

Query: 297  IRKKPGYSWV 306
            + K+PG SW+
Sbjct: 1366 VSKQPGCSWI 1375



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 137/246 (55%), Gaps = 3/246 (1%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R+  SWN++I+G+      E AL   ++M Q+ +  +  T +S + A   I   K+G Q+
Sbjct: 450 RDSYSWNSLISGYERHSMSEAALYALTKM-QSEVTPNQSTFSSALAACANIFLLKQGMQI 508

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA + + GY+ +  +++ L+ MY  C   + + ++F +   RD++ WNS++ GCA+ G  
Sbjct: 509 HAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKG 568

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
              + LF++MQK  IK D  TFL  L +C   G +  G  YF LM +++ +  PR EHY 
Sbjct: 569 EYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMDESII--PRIEHYE 626

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
            ++ LLG+ G + E E F+  M   P  +++  +   C+ +GNR++  R+AK + D  P 
Sbjct: 627 CMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCINDSNPL 686

Query: 265 DPAIYV 270
            P  +V
Sbjct: 687 TPVQFV 692



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 101/186 (54%), Gaps = 4/186 (2%)

Query: 9   CDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           C    D + V+  ++ RN +SWNA++ G+        AL  F +MRQ   + D  T+ S+
Sbjct: 331 CGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSV 390

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK--VFSSMDER 126
           + A   I    +G+++HA   K G+ S+  ++N LV MY+ CG +  A +  +F    ER
Sbjct: 391 LSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSER 450

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-Y 185
           D  SWNSL+ G   H  S  A+    +MQ +E+ P+ +TF   L+AC +   + +G+Q +
Sbjct: 451 DSYSWNSLISGYERHSMSEAALYALTKMQ-SEVTPNQSTFSSALAACANIFLLKQGMQIH 509

Query: 186 FYLMRN 191
            Y++R 
Sbjct: 510 AYMIRK 515



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 127/293 (43%), Gaps = 35/293 (11%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y  C    D +  +  +   N ISWN I+  +   G G+ A+  F  M  AG+    +T
Sbjct: 195 VYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYT 254

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA------------ 112
           ++  V A    +  +EG+ +HA + + GY+ +V V++ +V MYA CGA            
Sbjct: 255 VSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAP 314

Query: 113 -------------------INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                              I DA +VF  M ER+LVSWN++L G         A+ LF+Q
Sbjct: 315 MKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQ 374

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA 213
           M++   + D  T   VLSAC     I KG +             P  ++  A+V +  + 
Sbjct: 375 MRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKN--ALVRMYSKC 432

Query: 214 GFLNEAES-FINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL-DLWPN 264
           G L  AE   +  M        + +L+S  + H   E A+ +  ++  ++ PN
Sbjct: 433 GCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSEVTPN 485



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 32/211 (15%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            Y++C+   + + V+ ++  RN +SWN++I  +   G   +AL  F  M +AG   D  T+
Sbjct: 937  YAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTL 996

Query: 66   TSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGA------------ 112
             S++ A   ++  +EG+Q+HA + K   +  ++ + N LV MYA CG             
Sbjct: 997  ASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMA 1056

Query: 113  -------------------INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                               + DA  VFS M E+++++WN L+   A +G   EA++LF +
Sbjct: 1057 SRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVR 1116

Query: 154  MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +++  + P   T+  VL+AC +   +  G Q
Sbjct: 1117 LKRESVWPTHYTYGNVLNACGNVADLQLGQQ 1147



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 86/169 (50%)

Query: 5    TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
             ++R     D + ++ ++   +Q S+NA+IA       G  AL   + M      ++ ++
Sbjct: 835  AHARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYS 894

Query: 65   ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
              S + A       + G Q+HAL+ K  +  +V++ + L+ MYA C    +A +VF +M 
Sbjct: 895  FASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMP 954

Query: 125  ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            ER++VSWNSL+     +G   EA+ LF  M K    PD  T   V+SAC
Sbjct: 955  ERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSAC 1003



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 12/227 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I + + C S  D + ++  +  R+  SWNAII      G   +AL  FS M   GI    
Sbjct: 92  IESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKD 151

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++            +Q+H  I K  + SNV +   LV +Y  C  + DA + F  
Sbjct: 152 ATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDD 211

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + E + +SWN ++      G    AV +F +M    ++P G T    + AC     +++G
Sbjct: 212 ILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEG 271

Query: 183 -LQYFYLMRNDASLEPPRAEHY----TAIVGLLGRAGFLNEAESFIN 224
              + +++R+         EH+    +++V +  + G ++ A+S  N
Sbjct: 272 RCIHAFVLRHG-------YEHHVHVRSSVVDMYAKCGAMDAAQSLFN 311



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%)

Query: 97  VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
            F+ NR +   A CG++ DA ++F  M  RD  SWN+++   +  G+  EA+ LF  M  
Sbjct: 85  TFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNS 144

Query: 157 TEIKPDGTTFLVVLSAC 173
             I+P   T   VLS C
Sbjct: 145 LGIRPKDATMASVLSCC 161



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 10/168 (5%)

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           + F + ++V A   +    + ++    +F      N F  N L+  +A  G   DA  +F
Sbjct: 794 ETFLLNTLVSAYARLGRLPDARR----VFDEIPHPNTFSYNALLSAHARLGRPADARALF 849

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            ++ + D  S+N+++   A H    +A+     M   +   +  +F   LSAC       
Sbjct: 850 HAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSR 909

Query: 181 KGLQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSM 226
            G+Q   L+    S  P   + Y  +A++ +  +  +  EA     +M
Sbjct: 910 TGVQVHALV----SKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAM 953



 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
            K  + +  F+ N LV  YA  G + DA +VF  +   +  S+N+LL   A  G   +A 
Sbjct: 787 LKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADAR 846

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
            LF  +      PD  ++  V++A          L +   M  D
Sbjct: 847 ALFHAIP----DPDQCSYNAVIAALAQHSRGADALLFLAAMHAD 886


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 111/290 (38%), Positives = 174/290 (60%), Gaps = 2/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +++  +  +N ISW  +I G+  +G  ++A +  ++M       D  T    + +   ++
Sbjct: 172 SLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQSTFACGLSSCAHLA 230

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             + GKQ+H L+ K GY +++FV N L+ MYA CG+I+ A  +F  +D  D+VSWNSL+ 
Sbjct: 231 ALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIA 290

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
             A +G  REA++LF +M+   + PD  TF+ +LSAC H G ID+GL+ F  M    ++E
Sbjct: 291 AYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIE 350

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
            P AEHY  +V LLGRAG L EA   +  M  N    ++ ALL AC++HGN E+A  +A+
Sbjct: 351 -PLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAE 409

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++L+  P+  + YVLLSN+      WD+   +R LM  +G  K+PG+SW+
Sbjct: 410 KLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWI 459



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 106/245 (43%), Gaps = 25/245 (10%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I  Y+R       +N+++ +  + N +  NA++AG+      ++A + F          D
Sbjct: 2   ITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLF----------D 51

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALI--FKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
                 +V    +++G+    +M   +  F+   + +V   N +V  +   G +N + + 
Sbjct: 52  AMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEF 111

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  +   + VSW ++L G A  G   EA +LF+QM    +      +  +++A      +
Sbjct: 112 FEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNV----VAWNAMIAAYVQNCHV 167

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS-RN-PGPSVYKA 237
           D+ +  F  M    S+       +T ++    R G L+EA   +N M  RN P  S +  
Sbjct: 168 DEAISLFMEMPEKNSIS------WTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTFAC 221

Query: 238 LLSAC 242
            LS+C
Sbjct: 222 GLSSC 226



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 7/200 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S    + ++  +   + +SWN++IA +   G+G +ALK F +M   G+  D 
Sbjct: 258 ITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDE 317

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVF 120
            T   I+ A   +    +G ++   + +  Y+     ++   +V +    G + +A ++ 
Sbjct: 318 VTFVGILSACSHVGLIDQGLKLFKCMVQ-AYNIEPLAEHYACMVDLLGRAGRLEEAFQLV 376

Query: 121 SSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-CHAGF 178
             M    +   W +LL  C  HG    A   F   +  E +P  T+  V+LS     AG 
Sbjct: 377 RGMKINANAGIWGALLGACRIHGNLELAK--FAAEKLLEFEPHKTSNYVLLSNMQAEAGR 434

Query: 179 IDKGLQYFYLMRNDASLEPP 198
            D+  +   LM+   + + P
Sbjct: 435 WDEVARVRRLMKEKGAEKQP 454


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 187/303 (61%), Gaps = 2/303 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           +YS+   + +   ++  +  ++ ++W+A+++G+  +G  E A+K F ++ + G++ + FT
Sbjct: 436 SYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFT 495

Query: 65  ITSIVGAIGV-ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            +S++ A     +  ++GKQ H+   K G+ + + V + LV MYA  G I  AN+VF   
Sbjct: 496 FSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQ 555

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            +RDLVSWNS++ G A HG  ++++++FE+M+   ++ DG TF+ V+SAC HAG +++G 
Sbjct: 556 VDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQ 615

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           +YF LM  D  +  P  EHY+ +V L  RAG L +A   IN M    G ++++ LL+AC+
Sbjct: 616 RYFDLMVKDYHI-VPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACR 674

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
           VH N ++   +A++++ L P D A YVLLSN+      W +   +R LM  + ++K+ GY
Sbjct: 675 VHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGY 734

Query: 304 SWV 306
           SW+
Sbjct: 735 SWI 737



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 100/170 (58%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y + +S  D + V+  +R +N +SW +++AG+   G  EQALK FS+M+  GI  + FT 
Sbjct: 137 YMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTF 196

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++G +      ++G Q+H ++ K G DS +FV N +V MY+    ++DA  VF SM+ 
Sbjct: 197 AAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMEN 256

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
           R+ VSWNS++ G   +G   EA +LF +M+   +K   T F  V+  C +
Sbjct: 257 RNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCAN 306



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 107/185 (57%), Gaps = 6/185 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           ++ YS+C    D   ++  +   +N +SW AII+G+   G  ++A+  F +MR+ G+  +
Sbjct: 336 MVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPN 395

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           +FT ++I+ A   +S      Q+HAL+ K  Y+++  V   L   Y+  G  N+A K+F 
Sbjct: 396 HFTYSTILTANAAVSP----SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFE 451

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH-AGFID 180
            +DE+D+V+W+++L G A  G    AV++F Q+ K  ++P+  TF  VL+AC      ++
Sbjct: 452 LIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVE 511

Query: 181 KGLQY 185
           +G Q+
Sbjct: 512 QGKQF 516



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 91/168 (54%), Gaps = 1/168 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+     D + V+ S+  RN +SWN++IAGF   G   +A + F  MR  G+ +     
Sbjct: 238 YSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIF 297

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++     I      KQ+H  + K G D ++ ++  L+  Y+ C  I+DA K+F  M  
Sbjct: 298 ATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHG 357

Query: 126 -RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            +++VSW +++ G   +G +  A+ LF QM++  ++P+  T+  +L+A
Sbjct: 358 VQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA 405



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           N ++  F      ++AL  F  +R++G   D  +++ ++   G +     GKQ+H    K
Sbjct: 61  NHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIK 120

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
            G+  +V V   LV MY    ++ D  +VF  M  +++VSW SLL G   +G + +A++L
Sbjct: 121 CGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKL 180

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           F QMQ   IKP+  TF  VL      G ++KG+Q
Sbjct: 181 FSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ 214


>gi|125597302|gb|EAZ37082.1| hypothetical protein OsJ_21424 [Oryza sativa Japonica Group]
          Length = 671

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 182/302 (60%), Gaps = 1/302 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C      + V++++  ++ ISW A++  +      ++AL  F EM + G++   
Sbjct: 351 VTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSI 410

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F ITS++ A    S    G Q+H+ + K+G D +  V+N LV MYA CG +  A K+F+S
Sbjct: 411 FCITSVLRACSATSSLSCGWQIHSRVVKLGVDDDTSVENALVTMYAKCGVVQVALKIFNS 470

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  R ++SWN+L+   + HG    A+QLF+ MQ+  + PD  TF+ +LS+C   G + +G
Sbjct: 471 MRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSSCSRMGLVAEG 530

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M+   +LE P+ EHYT +V L  RAG  ++A  FI++M   P   V++ALL++C
Sbjct: 531 CEYFKQMKTKYNLE-PKMEHYTCMVDLFARAGRFSDAMKFIDAMPCQPDQLVWEALLASC 589

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN ++   +AK++L++ P DP+ Y++LS++  + D WD+    RTL+  + +RK  G
Sbjct: 590 RVHGNLDLGRMAAKKILEIKPEDPSPYIILSSIHASIDMWDEKARNRTLLDFQQLRKDVG 649

Query: 303 YS 304
            S
Sbjct: 650 SS 651



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 9/222 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID--I 60
           +L+Y       D + V+  +  RN +SW+ +IA    LG    AL  F+ M + G     
Sbjct: 44  LLSYQARGHLADARGVFDEMPRRNVVSWSVLIAASSRLGVLGDALSLFAGMLRGGERDRP 103

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           + FT+ ++V           G+Q+HA   K+G D +  V   LV MYA CG +  + + F
Sbjct: 104 NSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRAF 163

Query: 121 SSMDERDLVSWNSLLLGCAHH---GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
               +R ++SW S++    +H   GY   A+ LF++M   ++ P   TF  +L       
Sbjct: 164 VLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCILKVFDVPE 223

Query: 178 FIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218
            +  G Q +  L++    ++P      TA++ + GR G ++E
Sbjct: 224 LLPSGKQVHGCLVKMGTEVDPALG---TALLAMYGRCGGMDE 262



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 125/279 (44%), Gaps = 16/279 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    +   +   +R  +  S  +++  +   G   +A++ F +M    + ID   I
Sbjct: 254 YGRCGGMDEITRLACRIR-HDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAI 312

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++     +   +  K++H    K  +  +  + N +V +Y  CG I  +  VF++++ 
Sbjct: 313 TSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLEN 372

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D +SW +LL     +  S+EA+  F +M +  ++        VL AC     +  G Q 
Sbjct: 373 KDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCGWQI 432

Query: 186 FYL-----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
                   + +D S+E        A+V +  + G +  A    NSM RN G   + AL++
Sbjct: 433 HSRVVKLGVDDDTSVE-------NALVTMYAKCGVVQVALKIFNSM-RNRGIISWNALIT 484

Query: 241 ACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSK 277
           +   HGN   A++    + +  + P+D     LLS+ S+
Sbjct: 485 SFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSSCSR 523



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 10/246 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSG---EQALKCFSEMRQAGIDIDY 62
           Y++C         +     R+ +SW ++IA   N G     + A+  F +M    +    
Sbjct: 150 YAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTN 209

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T + I+    V      GKQ+H  + K+G + +  +   L+ MY  CG +++  ++   
Sbjct: 210 ATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACR 269

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +   D  S  SLL   A +G + EAV++F  M    +  D +    +L  C   G +   
Sbjct: 270 I-RHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVV 328

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            + + Y ++N   L+        AIV + G+ G +  +E   N++  N     + ALL+ 
Sbjct: 329 KEIHCYALKNFFRLDTLL---LNAIVTVYGKCGDIASSEIVFNTL-ENKDTISWTALLT- 383

Query: 242 CQVHGN 247
           C V  +
Sbjct: 384 CYVQND 389



 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 26/206 (12%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           + +H    K+G  ++ ++ N L+  Y   G + DA  VF  M  R++VSW+ L+   +  
Sbjct: 22  RAVHGAAVKLGCLASTYLCNNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIAASSRL 81

Query: 142 GYSREAVQLFEQMQK--TEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-----MRNDAS 194
           G   +A+ LF  M +     +P+  T   +++ C  A     G Q         +  D S
Sbjct: 82  GVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDES 141

Query: 195 LEPPRAEHYTAI--VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV-HGN---R 248
           +     + Y     VG   RA  L    S ++  S           + AC V HG+   R
Sbjct: 142 VAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTS-----------MIACLVNHGDSGYR 190

Query: 249 EIAVRSAKR--VLDLWPNDPAIYVLL 272
           + A+   K+  VL +WP +     +L
Sbjct: 191 DTAIVLFKKMLVLKVWPTNATFSCIL 216


>gi|297605857|ref|NP_001057684.2| Os06g0493800 [Oryza sativa Japonica Group]
 gi|255677066|dbj|BAF19598.2| Os06g0493800 [Oryza sativa Japonica Group]
          Length = 721

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 182/302 (60%), Gaps = 1/302 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C      + V++++  ++ ISW A++  +      ++AL  F EM + G++   
Sbjct: 351 VTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSI 410

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F ITS++ A    S    G Q+H+ + K+G D +  V+N LV MYA CG +  A K+F+S
Sbjct: 411 FCITSVLRACSATSSLSCGWQIHSRVVKLGVDDDTSVENALVTMYAKCGVVQVALKIFNS 470

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  R ++SWN+L+   + HG    A+QLF+ MQ+  + PD  TF+ +LS+C   G + +G
Sbjct: 471 MRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSSCSRMGLVAEG 530

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M+   +LE P+ EHYT +V L  RAG  ++A  FI++M   P   V++ALL++C
Sbjct: 531 CEYFKQMKTKYNLE-PKMEHYTCMVDLFARAGRFSDAMKFIDAMPCQPDQLVWEALLASC 589

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN ++   +AK++L++ P DP+ Y++LS++  + D WD+    RTL+  + +RK  G
Sbjct: 590 RVHGNLDLGRMAAKKILEIKPEDPSPYIILSSIHASIDMWDEKARNRTLLDFQQLRKDVG 649

Query: 303 YS 304
            S
Sbjct: 650 SS 651



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 9/222 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID--I 60
           +L+Y       D + V+  +  RN +SW+ +IA    LG    AL  F+ M + G     
Sbjct: 44  LLSYQARGHLADARGVFDEMPRRNVVSWSVLIAASSRLGVLGDALSLFAGMLRGGERDRP 103

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           + FT+ ++V           G+Q+HA   K+G D +  V   LV MYA CG +  + + F
Sbjct: 104 NSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRAF 163

Query: 121 SSMDERDLVSWNSLLLGCAHH---GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
               +R ++SW S++    +H   GY   A+ LF++M   ++ P   TF  +L       
Sbjct: 164 VLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCILKVFDVPE 223

Query: 178 FIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218
            +  G Q +  L++    ++P      TA++ + GR G ++E
Sbjct: 224 LLPSGKQVHGCLVKMGTEVDPALG---TALLAMYGRCGGMDE 262



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 125/279 (44%), Gaps = 16/279 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    +   +   +R  +  S  +++  +   G   +A++ F +M    + ID   I
Sbjct: 254 YGRCGGMDEITRLACRIR-HDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAI 312

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++     +   +  K++H    K  +  +  + N +V +Y  CG I  +  VF++++ 
Sbjct: 313 TSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLEN 372

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D +SW +LL     +  S+EA+  F +M +  ++        VL AC     +  G Q 
Sbjct: 373 KDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCGWQI 432

Query: 186 FYL-----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
                   + +D S+E        A+V +  + G +  A    NSM RN G   + AL++
Sbjct: 433 HSRVVKLGVDDDTSVE-------NALVTMYAKCGVVQVALKIFNSM-RNRGIISWNALIT 484

Query: 241 ACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSK 277
           +   HGN   A++    + +  + P+D     LLS+ S+
Sbjct: 485 SFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSSCSR 523



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 10/246 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSG---EQALKCFSEMRQAGIDIDY 62
           Y++C         +     R+ +SW ++IA   N G     + A+  F +M    +    
Sbjct: 150 YAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTN 209

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T + I+    V      GKQ+H  + K+G + +  +   L+ MY  CG +++  ++   
Sbjct: 210 ATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACR 269

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +   D  S  SLL   A +G + EAV++F  M    +  D +    +L  C   G +   
Sbjct: 270 I-RHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVV 328

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            + + Y ++N   L+        AIV + G+ G +  +E   N++  N     + ALL+ 
Sbjct: 329 KEIHCYALKNFFRLDTLL---LNAIVTVYGKCGDIASSEIVFNTL-ENKDTISWTALLT- 383

Query: 242 CQVHGN 247
           C V  +
Sbjct: 384 CYVQND 389



 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 26/206 (12%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           + +H    K+G  ++ ++ N L+  Y   G + DA  VF  M  R++VSW+ L+   +  
Sbjct: 22  RAVHGAAVKLGCLASTYLCNNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIAASSRL 81

Query: 142 GYSREAVQLFEQMQK--TEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-----MRNDAS 194
           G   +A+ LF  M +     +P+  T   +++ C  A     G Q         +  D S
Sbjct: 82  GVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDES 141

Query: 195 LEPPRAEHYTAI--VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV-HGN---R 248
           +     + Y     VG   RA  L    S ++  S           + AC V HG+   R
Sbjct: 142 VAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTS-----------MIACLVNHGDSGYR 190

Query: 249 EIAVRSAKR--VLDLWPNDPAIYVLL 272
           + A+   K+  VL +WP +     +L
Sbjct: 191 DTAIVLFKKMLVLKVWPTNATFSCIL 216


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 184/305 (60%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I  YS+C+  +     ++ S+   N ISW A+I+GF      E+A+  F EM + G+  +
Sbjct: 304 ITMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVREN 363

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            F+ +SI+   G ++  ++GKQ+HA I K  +  ++ V N L+ MY+ CG++ DA+ VF 
Sbjct: 364 DFSFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLSVNNALIDMYSKCGSLEDAHLVFM 423

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M + D+VS  ++++    HG  +EA+++  +M+   + PDG TFL  L AC H G +++
Sbjct: 424 KMGKHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCLYACSHGGLVEE 483

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G++ F +M  D +L+P R EH+  +V +LGRAG LNEAE+FI+ M       V++ LL A
Sbjct: 484 GVRVFKIMIEDHNLKPKR-EHFACVVDMLGRAGRLNEAENFIDEMGIESDVLVWETLLGA 542

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+VHG   +  +SA+++++L P     YVLL+N+      W+D   +R  + + G++K+ 
Sbjct: 543 CRVHGEMVLGEKSAQKIMELQPGRHGPYVLLANIYAERGSWEDKVMVREKLVSHGLKKQV 602

Query: 302 GYSWV 306
           G SWV
Sbjct: 603 GCSWV 607



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 87/172 (50%), Gaps = 1/172 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D    ++ +   + +SWN +I G     S E A++ FS+M +  + +D FT+TSI+    
Sbjct: 214 DAIKAFNEIMELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCS 273

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC-GAINDANKVFSSMDERDLVSWN 132
                K G Q H    K+G      + N L+ MY+ C   +    K+F S+ E +++SW 
Sbjct: 274 KPGDLKHGMQFHGSAIKLGLAHETPIYNALITMYSKCEKGVASPVKIFGSISEPNIISWT 333

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++ G   +  + EA+ LF++M +  ++ +  +F  +L    +   +++G Q
Sbjct: 334 AMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQGKQ 385



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 1/171 (0%)

Query: 16  QNVYSSVRTRNQISWNAII-AGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
             ++ ++  R+ +S+N +I A   N       +  +S+M++  +  ++ T   ++GA   
Sbjct: 114 HQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACDG 173

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +   +     HA   + G  SN FV + LV  YA    + DA K F+ + E DLVSWN +
Sbjct: 174 LIALRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVSWNIM 233

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           + GCA +     AV++F QM K  ++ DG T   ++  C   G +  G+Q+
Sbjct: 234 IDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQF 284



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 58/97 (59%), Gaps = 1/97 (1%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G  +H  + K+  +  + + N+L+ +Y   G I+ A+++F +M  RD+VS+N+++  
Sbjct: 75  LRTGMSVHTYLVKLNINGFILIWNKLLSLYLKFGHIHHAHQLFDTMPRRDVVSFNTMISA 134

Query: 138 CAHHGY-SREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
              + Y + + V L+ +M+K ++KP+  TF  ++ AC
Sbjct: 135 SVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGAC 171


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 167/289 (57%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  R+ ISWN +I G+   G   +AL  F +MR  G+     T+ S++ A   +  
Sbjct: 254 VFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA 313

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             +G  +H  I     + N  V   LV MYA CG I+ A +VF++M+ +D+++WN+++ G
Sbjct: 314 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 373

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG  +EA QLF++M++  ++P+  TF+ +LSAC HAG +D+G +    M +   +E 
Sbjct: 374 MAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIE- 432

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P+ EHY  ++ LL RAGFL EA   I +M   P PS   ALL  C++HGN E+     KR
Sbjct: 433 PKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKR 492

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++L P     Y+LLSN+  A   WDDA  +R LM   GI K PG S +
Sbjct: 493 LINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVI 541



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 131/282 (46%), Gaps = 36/282 (12%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           +N++I    +  +  +AL  +  M Q+G+  D+ T   ++ A    S    G  +H  + 
Sbjct: 134 YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVV 193

Query: 90  KIGYDSNVFVQNRLVFMYA-------------ICGA------------------INDANK 118
           K G++ + ++ + L+ +YA             +C A                  +  A  
Sbjct: 194 KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARM 253

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           VF  M  RD++SWN+++ G A  G   EA+ LF+QM+   +KP   T + +LSAC H G 
Sbjct: 254 VFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA 313

Query: 179 IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
           +DKGL + +   ND  +E   +   TA+V +  + G ++ A    N+M  +     +  +
Sbjct: 314 LDKGL-HLHTYINDNRIE-VNSIVGTALVDMYAKCGKISLATQVFNAM-ESKDVLAWNTI 370

Query: 239 LSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
           ++   +HGN + A +  K + +  + PND     +LS  S A
Sbjct: 371 IAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHA 412



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 72/139 (51%), Gaps = 2/139 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        V++++ +++ ++WN IIAG    G+ ++A + F EM++AG++ +  T 
Sbjct: 343 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITF 402

Query: 66  TSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +I+ A        EG++ +  +    G +  V     ++ + A  G + +A ++  +M 
Sbjct: 403 VAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMP 462

Query: 125 -ERDLVSWNSLLLGCAHHG 142
            E +  +  +LL GC  HG
Sbjct: 463 MEPNPSALGALLGGCRIHG 481


>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
          Length = 493

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 108/279 (38%), Positives = 171/279 (61%), Gaps = 1/279 (0%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SWNAI+         E+  +    M  +    DY T+T+++GA       + G Q+H  
Sbjct: 173 VSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCY 232

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
             K G + +  V N L+ +YA CG++  A+K+F SM   D+VSW+SL+LG A  GY  EA
Sbjct: 233 ALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEA 292

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           ++LF+ M++ ++KP+  TF+ VL+AC H G +++G + +  M  +  + P R EH + +V
Sbjct: 293 LKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTR-EHCSCMV 351

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267
            LL RAG LNEAE FI+ M+ +P   V+K LL+AC+ HGN ++  R+A+ +L + P++ A
Sbjct: 352 DLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSA 411

Query: 268 IYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +VLL N+  +   W+D   +R+LM  RG+RK PG SW+
Sbjct: 412 AHVLLCNIYASKGNWEDVARLRSLMKQRGVRKVPGQSWI 450



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 2/171 (1%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN +SW ++IAG+   G G  AL+ + +M Q+G+  D FT  SI+ A   +     G+Q+
Sbjct: 4   RNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQL 63

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA + K  + +++  QN L+ MY     I DA  VFS M  RDL+SW S++ G +  GY 
Sbjct: 64  HAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYE 123

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            EA+  F++M   + +PD   +  +++   + G +   + +F  MR +A L
Sbjct: 124 LEALCYFKEMLH-QGRPDLVAWNAIIAGFAY-GELRDAIFFFEEMRCNADL 172



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 118/277 (42%), Gaps = 43/277 (15%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++ +  +D  +V+S + TR+ ISW ++IAGF  LG   +AL  F EM   G     
Sbjct: 83  ISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGR---- 138

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
                +V    +I+GF  G+   A+ F        F + R       C A          
Sbjct: 139 ---PDLVAWNAIIAGFAYGELRDAIFF--------FEEMR-------CNA---------- 170

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
               DLVSWN++L  C  H  + E  +L + M  ++ +PD  T   VL A      I+ G
Sbjct: 171 ----DLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIG 226

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            Q + Y ++   + +         ++ L  + G L  A    +SM  NP    + +L+  
Sbjct: 227 NQVHCYALKTGLNCDTSVT---NGLIDLYAKCGSLKTAHKIFDSMI-NPDVVSWSSLILG 282

Query: 242 CQVHGNREIAVRSAK--RVLDLWPNDPAIYVLLSNVS 276
               G  E A++  K  R LD+ PN      +L+  S
Sbjct: 283 YAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACS 319



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 2/139 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S      ++ S+   + +SW+++I G+   G GE+ALK F  MR+  +  ++ T 
Sbjct: 252 YAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTF 311

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A   +   +EG +++  + K  G        + +V + A  G +N+A      M 
Sbjct: 312 VGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMA 371

Query: 125 -ERDLVSWNSLLLGCAHHG 142
            + D+V W +LL  C  HG
Sbjct: 372 FDPDIVVWKTLLAACKTHG 390



 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER++VSW S++ G + +G    A++ + QM ++ + PD  TF  ++ AC   G I  G
Sbjct: 1   MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLG 60

Query: 183 LQ 184
            Q
Sbjct: 61  RQ 62


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 179/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    D + V++ +  ++ + WN++I G      GE+A+K F+++  +G+  + 
Sbjct: 465 IDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNE 524

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  ++V     ++    G+Q HA I K G D++  V N L+ MYA CG I +   +F S
Sbjct: 525 FTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFES 584

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
               D++ WNS++   A HG++ EA+Q+F  M + E++P+  TF+ VLSAC HAGF+ +G
Sbjct: 585 TCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEG 644

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L +F  M+++  +EP   EHY ++V L GR+G L+ A+ FI  M   P  +V+++LLSAC
Sbjct: 645 LNHFNSMKSNYDIEPG-IEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSAC 703

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            + GN EI   +A+  L   P D   YVLLSN+  +   W D  ++R  M + G  K+ G
Sbjct: 704 HLFGNAEIGRYAAEMALLADPTDSGPYVLLSNIYASKGLWADVHNLRQQMDSSGTVKETG 763

Query: 303 YSWV 306
            SW+
Sbjct: 764 CSWI 767



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 122/237 (51%), Gaps = 11/237 (4%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+ ++  R  ++WN +I G+  +G G  AL+ F  M   G+  D F + S V A   +  
Sbjct: 177 VFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGF 236

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G+Q+H   ++   +++  V N L+ +Y  C  ++ A K+F  M+ R+LVSW +++ G
Sbjct: 237 LEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISG 296

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLE 196
              + ++ EA+ +F  M +   +PDG     +L++C     I +G Q + ++++ D    
Sbjct: 297 YMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADL--- 353

Query: 197 PPRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
              A+ Y   A++ +  +   L EA +  ++++ +   S Y A++       NR++A
Sbjct: 354 --EADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAIS-YNAMIEGYS--KNRDLA 405



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + ++  +  RN +SW  +I+G+       +A+  F  M QAG   D F  
Sbjct: 266 YCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFAC 325

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI+ + G ++   +G+Q+HA + K   +++ +V+N L+ MYA C  + +A  VF ++ E
Sbjct: 326 TSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAE 385

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            D +S+N+++ G + +    EAV +F++M+   ++P   TF+ +L        I+   Q 
Sbjct: 386 DDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQI 445

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           +  ++++  SL+   A   +A++ +  +   +N+A++  N +
Sbjct: 446 HGLIIKSGTSLDLYAA---SALIDVYSKCSLVNDAKTVFNML 484



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 96/180 (53%), Gaps = 1/180 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFT 64
           YS      D ++++  +  RN +SW ++I+ +   G  + A+  F   ++A  ++ + F 
Sbjct: 63  YSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFL 122

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + S++ A         G+Q+H +  K+  D+NV+V   L+ +YA  G +++A  VF ++ 
Sbjct: 123 LASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALP 182

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            R  V+WN+++ G A  G    A++LF++M    ++PD       +SAC   GF++ G Q
Sbjct: 183 VRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQ 242



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 10/152 (6%)

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +HA     G   ++F+ N L+  Y+  G + DA  +F  M  R+LVSW S++     HG 
Sbjct: 40  IHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGR 99

Query: 144 SREAVQLFEQMQKTEIK-PDGTTFLVVLSACCHAGFIDKGLQYFYL---MRNDASLEPPR 199
              A+ LF   QK   + P+      VL AC  +  +  G Q   +   +  DA++    
Sbjct: 100 DDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVG- 158

Query: 200 AEHYTAIVGLLGRAGFLNEAESFINSMS-RNP 230
               TA++ L  + G ++EA    +++  R P
Sbjct: 159 ----TALINLYAKLGCMDEAMLVFHALPVRTP 186


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 177/302 (58%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID-YFT 64
           Y+    S +   ++ S+  RN  +W A+I+G  N G    A++ F EMR+ G+ ID  F 
Sbjct: 181 YASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFV 240

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++ ++G    ++ F  G+Q+H    ++G+ SN+ V N L+ MY+ C  I  A +VF  + 
Sbjct: 241 LSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGIT 300

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD++SW ++++G A HG + EA+ L+++M     KP+  TF+ ++ AC HAG + KG Q
Sbjct: 301 FRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQ 360

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M+N+  +  PR +HYT  + LL R+G L EAE  + +M   P  + + ALLSAC  
Sbjct: 361 LFESMKNEYGIT-PRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTK 419

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           + + E+ +R + ++L+L P D + Y+LLSNV      WD    +R  M    IRK+PGYS
Sbjct: 420 YKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYS 479

Query: 305 WV 306
           W+
Sbjct: 480 WI 481



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 5/180 (2%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFTITSIVGAI 72
           D  +++     R+   +++++    +  S E AL     M  A  +  D+F I+S+    
Sbjct: 56  DALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHPDHFVISSVASVF 115

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
             +   + G+Q+HA      Y+ +  V++ LV MY  CG+ +D  KVF SM  ++ V W 
Sbjct: 116 ARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWT 175

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           +L+ G A +G S EA+QLF  M    +      +  ++S   + G     ++ F  MR D
Sbjct: 176 ALVSGYASNGRSEEALQLFRSMPGRNL----FAWTALISGLVNTGESVGAVELFVEMRRD 231


>gi|222630191|gb|EEE62323.1| hypothetical protein OsJ_17112 [Oryza sativa Japonica Group]
          Length = 591

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 172/302 (56%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            YS+C    D   V+ S R  +++    I+ GF   G  E+A + F+EM  AG +ID  T
Sbjct: 267 VYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENT 326

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +++++GA G  + F  GKQ+HAL+ K  +  N +V N LV MY+ CG + ++ +VF  M 
Sbjct: 327 VSAVLGAFGASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVRVFDEMP 386

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            ++ VSWNS++   A HG+  E  QLFE M+    KP   TFL +L AC H G   KGL+
Sbjct: 387 SKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLE 446

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
               M +   +  PR EHY  +V +LGRAG L++A+SFI          +++AL+ AC  
Sbjct: 447 ILNSMSSQYGV-LPRMEHYACVVDMLGRAGLLDDAKSFIEDGPFTDNALLWQALMGACSF 505

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN E+   +A+++L L P+  A YVLLSN+  +   WDD   +   M   G+RK  G S
Sbjct: 506 HGNSEVGKYAAEKLLLLDPSCTAAYVLLSNIYSSEGRWDDRAKVMKRMSEMGLRKDTGKS 565

Query: 305 WV 306
           W+
Sbjct: 566 WI 567



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 7/187 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFT 64
           Y+RC    D   V+  +R R+ +SWN++IA   + G+G+ AL  F  M R      D  T
Sbjct: 67  YARCGRREDAARVFDEMRVRDAVSWNSLIAA--SRGAGD-ALALFRRMLRSDARACDRAT 123

Query: 65  ITSIVG--AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+++   A    +       +H L+   G+++ V V N LV  Y  CG+   A +VF  
Sbjct: 124 FTTVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHG 183

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E+++++W +++ G A     +E+  LF QM +T +  +  T+   L AC  +    +G
Sbjct: 184 MAEKNVITWTAMISGMARAELYKESFSLFGQMIRT-VDANNATYSCALLACARSLAAREG 242

Query: 183 LQYFYLM 189
            Q   L+
Sbjct: 243 QQVHGLV 249



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 1/170 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y  C S    + V+  +  +N I+W A+I+G       +++   F +M +  +D + 
Sbjct: 165 VTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQMIRT-VDANN 223

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T +  + A       +EG+Q+H L+ K G++ ++ V++ L+ +Y+ CG + DA  VF S
Sbjct: 224 ATYSCALLACARSLAAREGQQVHGLVVKAGFEDDLHVESGLMDVYSKCGLMEDALTVFRS 283

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
             E D V    +L+G A +G   +A +LF +M     + D  T   VL A
Sbjct: 284 CREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSAVLGA 333



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 15/130 (11%)

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFK----------IGYDSNVFVQ-NRLVFMYA 108
           ++Y   + ++ + G     + G  +HA + K            +  +V V  N LV MYA
Sbjct: 9   LNYARFSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNSLVSMYA 68

Query: 109 ICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFL 167
            CG   DA +VF  M  RD VSWNSL+      G   +A+ LF +M +++ +  D  TF 
Sbjct: 69  RCGRREDAARVFDEMRVRDAVSWNSLIAASRGAG---DALALFRRMLRSDARACDRATFT 125

Query: 168 VVLSACCHAG 177
            VLS C  AG
Sbjct: 126 TVLSECARAG 135


>gi|18873857|gb|AAL79803.1|AC079874_26 putative pentatricopeptide repeat domain containing protein [Oryza
           sativa Japonica Group]
          Length = 391

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    + Q ++  +  +  +SWNAI++GF      E+A K FSEM   G+  D+FT 
Sbjct: 25  YCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTF 84

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++     ++  + GKQ+H  I K     + ++ + LV MYA CG + D+  VF  +++
Sbjct: 85  ATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEK 144

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSWN+++ G A HG   EA+++FE+MQK  + P+  TF+ VL AC H G  D G +Y
Sbjct: 145 RDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRY 204

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+LM     LE P+ EH+  +V +LGR+    EA  FINSM       ++K LLS C++ 
Sbjct: 205 FHLMTTHYKLE-PQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIR 263

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + EIA  +A  VL L P+D ++Y+LLSNV   +  W D    R L+    ++K+PG SW
Sbjct: 264 QDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSW 323

Query: 306 V 306
           +
Sbjct: 324 I 324



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 56/101 (55%)

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +H  + K G  S+ FV + +V MY  CG I++A K+   +  + +VSWN++L G + +  
Sbjct: 2   VHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKE 61

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           S EA + F +M    +KPD  TF  VL  C +   I+ G Q
Sbjct: 62  SEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ 102


>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
          Length = 567

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 107/291 (36%), Positives = 174/291 (59%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +R ++ ISWNA+IAG+ + G GE+A++  + M + G+  D+ T+ +++ A   +
Sbjct: 224 RRLFDGIRAKDVISWNAMIAGYVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSAL 283

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  ++GK  HA+  K   +S +   N L+ MY+ CG + ++  VF ++  +D+VSWN+++
Sbjct: 284 ALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTII 343

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
              A HG  ++ + LF +M+ T + PD  TFL VLSAC H G +D  L+ F LM +  ++
Sbjct: 344 AAYAQHGKYQKVIALFHEMEVTGLIPDDITFLSVLSACGHVGMVDASLKLFDLMSSKYAI 403

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
             PRAEHY  IV +L RAG L +A S+I  M      +V+ +LL ACQ+HGN ++   +A
Sbjct: 404 S-PRAEHYACIVDILSRAGQLEKASSYIKHMPLKAEKNVWGSLLGACQIHGNVQLGELAA 462

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           K ++         YV+LSN+  A   W     IR  M  RG++K+PGYSW 
Sbjct: 463 KMLVQSDSQSSGPYVILSNIYAAAGMWGQVNQIRGQMKERGVKKQPGYSWT 513



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 41/293 (13%)

Query: 13  LDFQNVY-SSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT----- 66
           LD  + Y +    RN  +WNA++AG   LG    A + F EM +  + + Y T+      
Sbjct: 96  LDAASAYFAGAPERNVATWNAMLAGLVRLGRVVDAQRLFDEMPERNV-VSYTTMVDWLAR 154

Query: 67  -----------------SIVGAIGVISG------FKEGKQMHALIFKIGYDSNVFVQNRL 103
                            ++V    +ISG      F E +++    F+   + NV     +
Sbjct: 155 RGEVERAREVFDSMPDRNLVSWAAMISGCVENGMFVEAREL----FEAMPEKNVVACTAM 210

Query: 104 VFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG 163
           +  +   G ++ A ++F  +  +D++SWN+++ G  H+G+  EA++L   M +  +KPD 
Sbjct: 211 ITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNGHGEEAMRLHALMFREGVKPDH 270

Query: 164 TTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE-SF 222
            T + VL+AC     + +G +  + +   A LE        A++ +  + G + E+E  F
Sbjct: 271 ATLIAVLTACSALALLRQG-KSTHAIAIKAMLESG-ISFSNALMTMYSKCGNVGESELVF 328

Query: 223 INSMSRNPGPSVYKALLSACQVHG--NREIAVRSAKRVLDLWPNDPAIYVLLS 273
           IN   R      +  +++A   HG   + IA+     V  L P+D     +LS
Sbjct: 329 IN--LRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDITFLSVLS 379



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 14/166 (8%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---DIDY 62
           YS+C +  + + V+ ++RT++ +SWN IIA +   G  ++ +  F EM   G+   DI +
Sbjct: 315 YSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDITF 374

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            ++ S  G +G++    +   + +  + I   +  +    +V + +  G +  A+     
Sbjct: 375 LSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEHYAC--IVDILSRAGQLEKASSYIKH 432

Query: 123 MD---ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
           M    E+++  W SLL  C  HG     VQL E   K  ++ D  +
Sbjct: 433 MPLKAEKNV--WGSLLGACQIHGN----VQLGELAAKMLVQSDSQS 472



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 36/214 (16%)

Query: 2   QILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGE--QALKCFSEMRQAGID 59
           +I   +R       + V+ ++  R+ +SWNA++      G      A + F E   A   
Sbjct: 21  RISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARRLFDE---AMPS 77

Query: 60  IDYFTITSIV------GAIGVISGFKEG---------KQMHALIFKIGY----------- 93
            D  +  SI+      G +   S +  G           M A + ++G            
Sbjct: 78  RDVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVVDAQRLFDEM 137

Query: 94  -DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
            + NV     +V   A  G +  A +VF SM +R+LVSW +++ GC  +G   EA +LFE
Sbjct: 138 PERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGMFVEARELFE 197

Query: 153 QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
            M +  +         +++  C  G +D   + F
Sbjct: 198 AMPEKNV----VACTAMITGHCKQGDVDSARRLF 227



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 16/166 (9%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG--YSREAVQLFEQMQKTE 158
           N+ +   A  G +  A +VF +M  RD+VSWN+LL      G  +   A +LF++   + 
Sbjct: 19  NQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSR 78

Query: 159 IKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218
              D  ++  +++ C   G +D    YF      A         + A++  L R G + +
Sbjct: 79  ---DVVSWNSIIAGCLAHGDLDAASAYF------AGAPERNVATWNAMLAGLVRLGRVVD 129

Query: 219 AESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
           A+   + M      S Y  ++      G     V  A+ V D  P+
Sbjct: 130 AQRLFDEMPERNVVS-YTTMVDWLARRGE----VERAREVFDSMPD 170


>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 736

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 177/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S  D + V+ S    +++S   I+ GF   G  E+A++ F +M   G ++D   +
Sbjct: 134 YSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNMV 193

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++GA GV +    GKQ+H+L+ K    SN FV N L+ MY+ CG + ++ KVF+ +  
Sbjct: 194 SAVLGACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLTC 253

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWNS++   A HG    A++L+E+M +    P   TFL +L AC H G +DKG+++
Sbjct: 254 RNSVSWNSMIAAFARHGDGFRALRLYEEMIQEGAVPTDLTFLSLLHACSHVGLVDKGMKF 313

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M     +  PRAEHY  +V +LGRAG LNEA+S I  +S  P   +++ALL AC + 
Sbjct: 314 LKSMTKVYGIS-PRAEHYACVVDMLGRAGLLNEAKSLIERLSIKPDVLIWQALLGACSIR 372

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ EI   +A+++L L P  PA YVLL+N+  +   WD+       M   G+ K+ G SW
Sbjct: 373 GDTEIGKYAAEQLLLLEPKKPAPYVLLANIYSSKGRWDERARTIKRMKEMGVAKETGISW 432

Query: 306 V 306
           +
Sbjct: 433 I 433



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 120/238 (50%), Gaps = 3/238 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  RN I+W AII+G       E +L  F +MR   I+ ++ T  S + A   +
Sbjct: 43  RQVFDEMLERNVITWTAIISGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGL 102

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              ++G+Q+H L++K+G  SN+ +++ L+ +Y+ CG++ DA +VF S  E D VS   +L
Sbjct: 103 QALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVIL 162

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           +G   +G+  EA++ F +M     + D      VL AC     +  G Q   L+   +  
Sbjct: 163 VGFTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACGVDTSLGLGKQIHSLVIKRSLG 222

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
             P   +   ++ +  + G L E+    N ++     S + ++++A   HG+   A+R
Sbjct: 223 SNPFVGN--GLINMYSKCGELQESIKVFNGLTCRNSVS-WNSMIAAFARHGDGFRALR 277



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
           N +V  +   G ++   +VF  M ER++++W +++ G + +    +++ LF QM+   I+
Sbjct: 27  NTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAIISGLSQNEMYEDSLGLFVQMRCGLIE 86

Query: 161 PDGTTFLVVLSACCHAGFIDKGLQ 184
           P+  T+L  L+AC     ++KG Q
Sbjct: 87  PNFLTYLSSLTACSGLQALEKGRQ 110



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
           MY  CG  +DA KVF  M  RD VSWN+++ G   +G      Q+F++M +  +     T
Sbjct: 1   MYFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNV----IT 56

Query: 166 FLVVLSACCHAGFIDKGLQYFYLMR 190
           +  ++S        +  L  F  MR
Sbjct: 57  WTAIISGLSQNEMYEDSLGLFVQMR 81


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 107/291 (36%), Positives = 172/291 (59%), Gaps = 2/291 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFTITSIVGAIGVI 75
           +++ S+      +W A+I+GF   G+   A+  F EMR+  I I D F + +++G    +
Sbjct: 190 DLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADL 249

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +    G+Q+H  + ++G+ S++ V N LV MY+ C  I+ A +VF  +  RD++SW ++L
Sbjct: 250 AALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTIL 309

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           +G A HG + E   L+ +M    +KP+  TF+ ++ AC HAG + KG Q F  M+ +  +
Sbjct: 310 VGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGM 369

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           +P   +HYT  + LL R+G+L+EAE  I +M   P  + + ALLSAC+ H + ++ +R A
Sbjct: 370 KPG-VQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVA 428

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             +L+L P DP+ Y+LLSNV      WD    +R +M    IRK PGYSWV
Sbjct: 429 DNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWV 479



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 5/193 (2%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGID 59
           L +  Y+R     D +  +     R+   ++A++A   +    E  L     M     + 
Sbjct: 41  LLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSSDPELVLPLLRRMLSDDALR 100

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            D+F + S+  A G +   + G+Q+HA      Y ++  V++ L+ MY  CG   DA KV
Sbjct: 101 PDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKV 160

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F S+  ++ V W +L+ G A +G + EA+ LF+ M    +     T+  ++S    AG  
Sbjct: 161 FDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGL----FTWTALISGFVKAGNY 216

Query: 180 DKGLQYFYLMRND 192
              +  F  MR D
Sbjct: 217 TGAMGLFVEMRRD 229



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 80/169 (47%), Gaps = 6/169 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + V+  +  R+ ISW  I+ G    G  E+    ++ M  AG+  +  T 
Sbjct: 281 YSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTF 340

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI--CGAINDANKVFSSM 123
             ++ A       ++G+Q+   + K  Y     VQ+   ++  +   G +++A K+ ++M
Sbjct: 341 VGLIYACSHAGLVQKGRQLFDSM-KREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTM 399

Query: 124 D-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             E D  +W +LL  C  H  ++  +++ + +   E++P   +  ++LS
Sbjct: 400 PYEPDEATWGALLSACKKHNDTQMCLRVADNL--LELRPKDPSTYILLS 446


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 111/290 (38%), Positives = 173/290 (59%), Gaps = 1/290 (0%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
            + V+  +R +  ISWNA++A + N     +A++ F  M++ GI+ D  T+ +++ + G 
Sbjct: 245 LKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGE 304

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +S    GK++H +I +    S++ ++N L+ MYA CG + +A  VF SM  RD+VSW S+
Sbjct: 305 VSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSI 364

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           +     HG+ REA+ LFE+M    ++PD   F+ +L+AC HAG +D G  YFY M ++  
Sbjct: 365 ISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFH 424

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           +  P+ EHY  +V LLGRAG + EA  FI  M   P   V+ ALL AC++H N +I + +
Sbjct: 425 IA-PKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLA 483

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           A  +L L P     YVLLSN+      W D   +R++M ++GI+K PG S
Sbjct: 484 ADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVS 533



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYFTITSIVGAIGVISGFKEGK 82
           R  + +N ++ G         AL  F+ MR  G     D++T    + +     G   G+
Sbjct: 83  RTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVLGR 142

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           Q+H+   ++G D NVFV +  + MYA CG  +DA ++F  M  RD+VSWN+++ G AH G
Sbjct: 143 QIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAG 202

Query: 143 YSREAVQLFEQMQKTEI-KPDGTTFLVVLSACCHAGFIDKGL 183
               A+ +F ++   +  KPD  T   +L +   A   D  L
Sbjct: 203 LFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIAL 244



 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 10/171 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C    + ++V+ S+ TR+ +SW +II+ +   G G +A+  F +M   G++ D    
Sbjct: 337 YANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAF 396

Query: 66  TSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM- 123
            +I+ A         GK   +++  +      +     +V +    G I +A      M 
Sbjct: 397 VAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMP 456

Query: 124 ---DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
              +ER    W +LL  C  H  S   + L        + P  T + V+LS
Sbjct: 457 IKPNER---VWGALLGACRIH--SNMDIGLLAADSLLRLAPKQTGYYVLLS 502


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 111/290 (38%), Positives = 173/290 (59%), Gaps = 1/290 (0%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
            + V+  +R +  ISWNA++A + N     +A++ F  M++ GI+ D  T+ +++ + G 
Sbjct: 135 LKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGE 194

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +S    GK++H +I +    S++ ++N L+ MYA CG + +A  VF SM  RD+VSW S+
Sbjct: 195 VSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSI 254

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           +     HG+ REA+ LFE+M    ++PD   F+ +L+AC HAG +D G  YFY M ++  
Sbjct: 255 ISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFH 314

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           +  P+ EHY  +V LLGRAG + EA  FI  M   P   V+ ALL AC++H N +I + +
Sbjct: 315 I-APKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLA 373

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           A  +L L P     YVLLSN+      W D   +R++M ++GI+K PG S
Sbjct: 374 ADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVS 423



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 1/108 (0%)

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
           G   G+Q+H+   ++G D NVFV +  + MYA CG  +DA ++F  M  RD+VSWN+++ 
Sbjct: 27  GLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMIS 86

Query: 137 GCAHHGYSREAVQLFEQMQKTEI-KPDGTTFLVVLSACCHAGFIDKGL 183
           G AH G    A+ +F ++   +  KPD  T   +L +   A   D  L
Sbjct: 87  GFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIAL 134



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 120/279 (43%), Gaps = 39/279 (13%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-DID 61
           I  Y+RC    D   ++  ++ R+ +SWNA+I+GF + G   +A+  F E+        D
Sbjct: 54  ISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPD 113

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             T+ SI+ ++G                          + R+  +  + G       VF 
Sbjct: 114 AGTMASILPSMG--------------------------KARVEDIALLKG-------VFD 140

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M  + L+SWN++L    ++    EAV+LF +MQK  I+PD  T   VL +C     +  
Sbjct: 141 EMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSL 200

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G +   +++          E   A++ +    G L EA    +SM      S + +++SA
Sbjct: 201 GKRIHEVIKRRRMCSSMLLE--NALMDMYANCGCLKEARDVFDSMGTRDVVS-WTSIISA 257

Query: 242 CQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
              HG+   A+   +++    L P+  A   +L+  S A
Sbjct: 258 YGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHA 296



 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 10/171 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C    + ++V+ S+ TR+ +SW +II+ +   G G +A+  F +M   G++ D    
Sbjct: 227 YANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAF 286

Query: 66  TSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM- 123
            +I+ A         GK   +++  +      +     +V +    G I +A      M 
Sbjct: 287 VAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMP 346

Query: 124 ---DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
              +ER    W +LL  C  H  S   + L        + P  T + V+LS
Sbjct: 347 IKPNER---VWGALLGACRIH--SNMDIGLLAADSLLRLAPKQTGYYVLLS 392


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 176/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I TY +C    D   V+      + + + +++  +   G GE+AL+ + EM+  GI  D 
Sbjct: 355 IDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDS 414

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F  +S++ A   +S +++GKQ+H  I K G+ S++F  N LV MYA CG+I DA+  FS 
Sbjct: 415 FVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSR 474

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  R +VSW++++ G A HGY +EA+QLF+QM K  + P+  T + VL AC HAG + + 
Sbjct: 475 IPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEA 534

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF  M+    +EP + EHY  ++ LLGRAG L  A   +N M       V+ ALL A 
Sbjct: 535 KHYFNSMKILFGIEPMQ-EHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAA 593

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N ++  ++A+ +L L P     +VLL+N+  +   WD    +R LM +  ++K+PG
Sbjct: 594 RIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPG 653

Query: 303 YSWV 306
            SW+
Sbjct: 654 MSWL 657



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 103/182 (56%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ Y++C    D ++++ ++  R+ +SWNA+ + + +     +A+  F +M  +GI  + 
Sbjct: 52  VILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNE 111

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F+++S++     +    +G+++H  + K+GYDS+ F  N LV MYA  G + DA+ VF  
Sbjct: 112 FSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDE 171

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + + D+VSWN+++ GC  H Y   A++L  +M K+ + P+  T    L AC      + G
Sbjct: 172 IAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELG 231

Query: 183 LQ 184
            Q
Sbjct: 232 RQ 233



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 7/258 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C+S  D + V+  +  R+ I+WNA+I+G       E+A   F  M   GI  +  T+
Sbjct: 257 YSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTL 316

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++ +I  +      +Q+HAL  K G++ + +V N L+  Y  CG + DA +VF     
Sbjct: 317 STVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPI 376

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            DLV + SL+   A  G   EA++L+ +MQ   IKPD      +L+AC      ++G Q 
Sbjct: 377 VDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQV 436

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNP--GPSVYKALLSACQ 243
              +     +    A    ++V +  + G + +A     + SR P  G   + A++    
Sbjct: 437 HVHILKFGFMSDIFAG--NSLVNMYAKCGSIEDASC---AFSRIPVRGIVSWSAMIGGLA 491

Query: 244 VHGNREIAVRSAKRVLDL 261
            HG  + A++  K++L +
Sbjct: 492 QHGYGKEALQLFKQMLKV 509



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 92/167 (55%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     D  +V+  +   + +SWNAIIAG        +AL+   EM ++G+  + FT+
Sbjct: 156 YAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTL 215

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S + A   ++  + G+Q+H+ + K+   S+ F+   L+ MY+ C +++DA  VF  M E
Sbjct: 216 SSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPE 275

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           RD+++WN+++ G + +    EA  LF  M    I  + TT   VL +
Sbjct: 276 RDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKS 322



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 9/196 (4%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           M   GI  + F   S++ A  V      GKQ+H ++   G+DS+ FV N LV +YA CG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
             DA  +F ++ +R +VSWN+L     H     EAV LF  M  + I+P+  +   +++ 
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 173 CCHAGFID--KGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
           C   G  D  +G + + YL++     +   A    A+V +  + G L +A S  + +++ 
Sbjct: 121 C--TGLEDSVQGRKIHGYLIKLGYDSDAFSA---NALVDMYAKVGILEDASSVFDEIAK- 174

Query: 230 PGPSVYKALLSACQVH 245
           P    + A+++ C +H
Sbjct: 175 PDIVSWNAIIAGCVLH 190


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 176/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YSR +     + ++     ++  SWNA+I+G+   G  E+A+  F EM++  +  +  T+
Sbjct: 353 YSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTV 412

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI+ A   +     GK +H LI +  ++SN+FV   L+ MYA CG+I +A ++FS M E
Sbjct: 413 TSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPE 472

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++ V+WN+++ G   HGY  EA+ LF +M  + + P G TFL VL AC HAG + +G + 
Sbjct: 473 KNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEI 532

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M +D   E P  EHY  +V LLGRAG L++A  FI  M   PGP V+ ALL AC +H
Sbjct: 533 FRSMVHDHGFE-PLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIH 591

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            +  +A  ++ ++ +L P +   YVLLSN+  A   + +A  +R ++  R + K PG + 
Sbjct: 592 KDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTL 651

Query: 306 V 306
           +
Sbjct: 652 I 652



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 140/303 (46%), Gaps = 11/303 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + ++  +   + +S+NA+I+G+      E +++ F E+  +G  ++    
Sbjct: 252 YSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNS--- 308

Query: 66  TSIVGAIGVISGFKE---GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +SIVG I V   F      + +H    K G  SN  V   L  +Y+    I  A  +F  
Sbjct: 309 SSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDE 368

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             E+ L SWN+++ G A +G + +A+ LF++MQK E++P+  T   +LSAC   G +  G
Sbjct: 369 SSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLG 428

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            ++ + + N  S E       TA++ +  + G + EA+    SM        + A++S  
Sbjct: 429 -KWVHDLINRESFE-SNIFVSTALIDMYAKCGSITEAQRLF-SMMPEKNAVTWNAMISGY 485

Query: 243 QVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
            +HG    A+     +L   + P       +L   S A    +     R+++++ G    
Sbjct: 486 GLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPL 545

Query: 301 PGY 303
           P +
Sbjct: 546 PEH 548



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 114/261 (43%), Gaps = 36/261 (13%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ + WN +++G       ++A+  F +M + GI  D  T+ +++  +  +
Sbjct: 161 RKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAEL 220

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G  +  L  K+G+ S+ +V   L  +Y+ CG I  A  +F  + + DLVS+N+++
Sbjct: 221 QDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMI 280

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL-----------VVLSACCHAGFIDK--- 181
            G   +  +  +V+LF+++  +  K + ++ +           + L+ C H GF  K   
Sbjct: 281 SGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIH-GFCTKSGV 339

Query: 182 --------GLQYFYLMRN---------DASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
                    L   Y   N         D S E   A  + A++    + G   +A S   
Sbjct: 340 VSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLAS-WNAMISGYAQNGLTEKAISLFQ 398

Query: 225 SMSR---NPGPSVYKALLSAC 242
            M +    P P    ++LSAC
Sbjct: 399 EMQKCEVRPNPVTVTSILSAC 419



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 13/246 (5%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIVGAIGVIS 76
           ++S++   +   +N +I  F    S   A+  ++ +R++  ++ D FT   ++     + 
Sbjct: 64  LFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLG 123

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
                     +    G+ S++FV + +V  Y     +  A KVF  M ERD V WN+++ 
Sbjct: 124 LGLLLHAHSIVA---GFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVS 180

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G   +    EA+ +F  M K  I  D TT   VL        +  G+    L     +++
Sbjct: 181 GLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCL-----AMK 235

Query: 197 PPRAEHYTAIVG---LLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
                H   I G   L  + G +  A      + + P    Y A++S    +   E +VR
Sbjct: 236 VGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQ-PDLVSYNAMISGYTCNNETESSVR 294

Query: 254 SAKRVL 259
             K +L
Sbjct: 295 LFKELL 300



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 1/100 (1%)

Query: 72  IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
           I  +S   +  Q HA I   G  +++    +L    +   AI+ A+ +FS++   DL  +
Sbjct: 17  INRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLY 76

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQK-TEIKPDGTTFLVVL 170
           N L+   + +     AV L+  ++K T ++PD  T+  V+
Sbjct: 77  NVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVI 116


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 178/305 (58%), Gaps = 3/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S    + ++  +  +  I+WNA+I+G+   G     L+ F +M+ +G+  D 
Sbjct: 195 ITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDP 254

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ +   +   K G+++  L+   G+  NVF+ N L+ MYA CG +  A  VF  
Sbjct: 255 FTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDI 314

Query: 123 MDERDLVSWNSLLLGC-AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           M  + LVSW +++ GC   HG     + LF+ M K  I+PDG  F++VLSAC H+G  DK
Sbjct: 315 MPVKSLVSWTAMI-GCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDK 373

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           GL+ F  M+ +  LEP   EHY+ +V LLGRAG L+EA  FI+SM   P  +V+ ALL A
Sbjct: 374 GLELFRAMKREYKLEPG-PEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGA 432

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++H N ++A  +  +V++  P +   YVL+SN+   +   +    IR +M  R  RKKP
Sbjct: 433 CKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKP 492

Query: 302 GYSWV 306
           GYS+V
Sbjct: 493 GYSYV 497



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 142/304 (46%), Gaps = 9/304 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQ--ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           I  Y +C    D + V+      +Q  + +NA+I+G+        A   F  M++ G+ +
Sbjct: 92  ISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSV 151

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D  TI  +V    V      G+ +H    K G  S V V N  + MY  CG++    ++F
Sbjct: 152 DSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLF 211

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M  + L++WN+++ G + +G + + ++LFEQM+ + + PD  T + VLS+C H G   
Sbjct: 212 DEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKK 271

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
            G +   L+  +A+   P      A++ +  R G L +A +  + M      S + A++ 
Sbjct: 272 IGQEVGELV--EANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVS-WTAMIG 328

Query: 241 ACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
              +HG  E  +     ++   + P D A++V++ +    +   D   ++   M  R  +
Sbjct: 329 CYGMHGMGETGLTLFDDMIKRGIRP-DGAVFVMVLSACSHSGLTDKGLELFRAM-KREYK 386

Query: 299 KKPG 302
            +PG
Sbjct: 387 LEPG 390



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 29  SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
           SWN  +          +++  +  M ++G   D F+   I+ +   +S    G+Q+H  +
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL--VSWNSLLLGCAHHGYSRE 146
            + G ++  FV   L+ MY  CG + DA KVF          V +N+L+ G   +    +
Sbjct: 77  IRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSD 136

Query: 147 AVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           A  +F +M++T +  D  T L ++  C
Sbjct: 137 AAFMFRRMKETGVSVDSVTILGLVPLC 163


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 177/302 (58%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID-YFT 64
           Y+    S +   ++ S+  RN  +W A+I+G  N G    A++ F EMR+ G+ ID  F 
Sbjct: 263 YASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFV 322

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++ ++G    ++ F  G+Q+H    ++G+ SN+ V N L+ MY+ C  I  A +VF  + 
Sbjct: 323 LSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGIT 382

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD++SW ++++G A HG + EA+ L+++M     KP+  TF+ ++ AC HAG + KG Q
Sbjct: 383 FRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQ 442

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M+N+  +  PR +HYT  + LL R+G L EAE  + +M   P  + + ALLSAC  
Sbjct: 443 LFESMKNEYGIT-PRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTK 501

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           + + E+ +R + ++L+L P D + Y+LLSNV      WD    +R  M    IRK+PGYS
Sbjct: 502 YKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYS 561

Query: 305 WV 306
           W+
Sbjct: 562 WI 563



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 5/180 (2%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFTITSIVGAI 72
           D  +++     R+   +++++    +  S E AL     M  A  +  D+F I+S+    
Sbjct: 138 DALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHPDHFVISSVASVF 197

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
             +   + G+Q+HA      Y+ +  V++ LV MY  CG+ +D  KVF SM  ++ V W 
Sbjct: 198 ARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWT 257

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           +L+ G A +G S EA+QLF  M    +      +  ++S   + G     ++ F  MR D
Sbjct: 258 ALVSGYASNGRSEEALQLFRSMPGRNL----FAWTALISGLVNTGESVGAVELFVEMRRD 313


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    + Q ++  +  +  +SWNAI++GF      E+A K FSEM   G+  D+FT 
Sbjct: 539 YCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTF 598

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++     ++  + GKQ+H  I K     + ++ + LV MYA CG + D+  VF  +++
Sbjct: 599 ATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEK 658

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSWN+++ G A HG   EA+++FE+MQK  + P+  TF+ VL AC H G  D G +Y
Sbjct: 659 RDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRY 718

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+LM     LE P+ EH+  +V +LGR+    EA  FINSM       ++K LLS C++ 
Sbjct: 719 FHLMTTHYKLE-PQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIR 777

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + EIA  +A  VL L P+D ++Y+LLSNV   +  W D    R L+    ++K+PG SW
Sbjct: 778 QDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSW 837

Query: 306 V 306
           +
Sbjct: 838 I 838



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 96/179 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C + ++   ++  ++ ++ +SWNAIIA     G  +  +  F+EM + G+  D FT 
Sbjct: 438 YGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTY 497

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +   + G  +H  + K G  S+ FV + +V MY  CG I++A K+   +  
Sbjct: 498 GSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGG 557

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           + +VSWN++L G + +  S EA + F +M    +KPD  TF  VL  C +   I+ G Q
Sbjct: 558 QQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ 616



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 127/259 (49%), Gaps = 7/259 (2%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++ +S  D +  +  +      + NA++ G    G G +A+  F  M ++ I  D  +
Sbjct: 336 VYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVS 395

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++ +  A     G+ +G+Q+H L  K G+D ++ V N ++ +Y  C A+ +A  +F  M 
Sbjct: 396 LSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMK 455

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++D VSWN+++     +G+  + +  F +M +  +KPD  T+  VL AC       + L+
Sbjct: 456 QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAAL----RSLE 511

Query: 185 YFYLMRNDASLEPPRAEHYTA--IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           Y  ++ +        ++ + A  +V +  + G ++EA+   + +      S + A+LS  
Sbjct: 512 YGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS-WNAILSGF 570

Query: 243 QVHGNREIAVRSAKRVLDL 261
            ++   E A +    +LD+
Sbjct: 571 SLNKESEEAQKFFSEMLDM 589



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 97/193 (50%), Gaps = 4/193 (2%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SWNA+++G+C  G  ++++  F EM + G+  D  T   ++ +   +     G Q+HAL
Sbjct: 157 VSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHAL 216

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
             K G + +V   + LV MY  C +++DA   F  M ER+ VSW + + GC  +      
Sbjct: 217 AVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRG 276

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAI 206
           ++LF +MQ+  +     ++     +C     ++ G Q + + ++N  S +       TAI
Sbjct: 277 LELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG---TAI 333

Query: 207 VGLLGRAGFLNEA 219
           V +  +A  L +A
Sbjct: 334 VDVYAKANSLTDA 346



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 84/179 (46%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D    +  +  RN +SW A IAG        + L+ F EM++ G+ +   + 
Sbjct: 236 YGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSY 295

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S   +   +S    G+Q+HA   K  + S+  V   +V +YA   ++ DA + F  +  
Sbjct: 296 ASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPN 355

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             + + N++++G    G   EA+ LF+ M ++ I+ D  +   V SAC       +G Q
Sbjct: 356 HTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQ 414



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 2/126 (1%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
           N ++  Y+  G I+ A  +F  M + D+VSWN+L+ G    G  +E+V LF +M +  + 
Sbjct: 129 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 188

Query: 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220
           PD TTF V+L +C     +  G+Q   L          R    +A+V + G+   L++A 
Sbjct: 189 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTG--SALVDMYGKCRSLDDAL 246

Query: 221 SFINSM 226
            F   M
Sbjct: 247 CFFYGM 252


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 176/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C+       +++ + ++N +SWN +I G+ NLG G +AL  F E  +  + +  
Sbjct: 390 IDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTE 449

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T +S +GA   ++  + G Q+H L  K      V V N L+ MYA CG I  A  VF+ 
Sbjct: 450 VTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNE 509

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+  D+ SWN+L+ G + HG  R+A+++F+ M+ ++ KP+G TFL VLS C +AG ID+G
Sbjct: 510 METIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQG 569

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
              F  M  D  +EP   EHYT +V L GR+G L++A + I  +   P   +++A+LSA 
Sbjct: 570 QDCFESMICDHGIEPC-LEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSAS 628

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
               N E A RSA+ +L + P D A YVLLSN+      W +   IR  M  +G++K+PG
Sbjct: 629 MNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEPG 688

Query: 303 YSWV 306
            SW+
Sbjct: 689 LSWI 692



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 141/283 (49%), Gaps = 21/283 (7%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     D   V++ +   + + W+ +IA FC  G   +A+  F  MR+  +  + FT+
Sbjct: 292 YTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTL 351

Query: 66  TSIVG--AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           +SI+   AIG  SG   G+Q+H L+ K+G+D +V+V N L+ +YA C  ++ A K+F+ +
Sbjct: 352 SSILNGCAIGKCSGL--GEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAEL 409

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             +++VSWN++++G  + G   +A+ +F +  + ++     TF   L AC     ++ G+
Sbjct: 410 SSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGV 469

Query: 184 QY--FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           Q     +  N+A     R     +++ +  + G +  A++  N M      S + AL+S 
Sbjct: 470 QVHGLAIKTNNAK----RVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVAS-WNALISG 524

Query: 242 CQVHGNREIAVRSAKRVLDLW------PNDPAIYVLLSNVSKA 278
              HG      R A R+ D+       PN      +LS  S A
Sbjct: 525 YSTHG----LGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNA 563



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 85/171 (49%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS C S    ++V+  +  ++ + W  I++ +   G  E +L+  S M   G   + 
Sbjct: 188 INAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNN 247

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T  + + A   +  F   K +H  I K  Y+ +  V   L+ +Y   G ++DA KVF+ 
Sbjct: 248 YTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNE 307

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           M + D+V W+ ++     +G+  +AV +F +M++  + P+  T   +L+ C
Sbjct: 308 MPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGC 358



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 100/217 (46%), Gaps = 8/217 (3%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D  N++  +  RN +S+  +  G+    + +  +  +S + + G +++    TS +    
Sbjct: 102 DALNLFDEMPERNNVSYVTLTQGY----ACQDPVGLYSRLHREGHELNPHVFTSFLKLFV 157

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +   +    +H+ I K+GYDSN FV   L+  Y++CG+++ A  VF  +  +D+V W  
Sbjct: 158 SLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAG 217

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG-FIDKGLQYFYLMRND 192
           ++     +G   +++QL  +M      P+  TF   L A    G F      +  +++  
Sbjct: 218 IVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTC 277

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
             L+P        ++ L  + G +++A    N M +N
Sbjct: 278 YELDPRVG---VGLLQLYTQLGDMSDAFKVFNEMPKN 311


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/291 (37%), Positives = 178/291 (61%), Gaps = 2/291 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV-I 75
            V+  +  ++ ++W+A+I G+  +G  E A++ F +M +  I  + +T + I+ A     
Sbjct: 62  KVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPT 121

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +G ++GKQ+HA   K  +++ + V + L+ MY+  G I  A +VF    ERDLVSWNS++
Sbjct: 122 AGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSII 181

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HGY R+A+++FE+MQ+  ++ DG TF+ V+SAC H G  ++G +YF +M  D  +
Sbjct: 182 SGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHI 241

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           E PR EHY+ +V L GRAG L +A   IN M      +V++ LL+A  +H N E+   +A
Sbjct: 242 E-PRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNLEVGKLAA 300

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +++ L P +PA YVLL+N+  +   W +   +R LM  + ++K  GYSW+
Sbjct: 301 DKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWI 351



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 4/121 (3%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           M + GI  + FT ++I+ A   +S F    +MHA   K  Y  +  V   L+  Y   G 
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPF----EMHAQAIKRNYVKSPSVGTALLDAYVKRGN 56

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           +++A+KVF  ++E+D+V+W++++ G A  G +  AV++F QM K +IKP+  TF  +++A
Sbjct: 57  VDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINA 116

Query: 173 C 173
           C
Sbjct: 117 C 117


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 175/302 (57%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C   LD    V++ +  ++ I WN++I      G   +A+  F +M   G   D  +
Sbjct: 406 YAKC-GRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVS 464

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I+  + A   +     GK++H L+ K    S+++ ++ L+ MYA CG +N + +VF  M 
Sbjct: 465 ISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQ 524

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ER+ VSWNS++    +HG  +E + LF +M +  I+PD  TFL ++SAC HAG +D+G++
Sbjct: 525 ERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIR 584

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           Y++LM  +  + P R EHY  +  + GRAG L+EA   INSM   P   V+  LL AC +
Sbjct: 585 YYHLMTEEYGI-PARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHI 643

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN E+A  ++K + DL P +   YVLL+NV      W     +R++M  RG+RK PGYS
Sbjct: 644 HGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYS 703

Query: 305 WV 306
           W+
Sbjct: 704 WI 705



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 98/179 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R  S  D +N++ +++     +WN +I GF  +G    AL  + +M  AG+  D +T 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             +V A   +   K GK +H  +  +G   +VFV + L+ +YA  G ++DA  +F ++ +
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +D V WN +L G   +G S  A+++F +M+ +EIKP+  TF  VLS C     +D G Q
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 115/244 (47%), Gaps = 7/244 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      Q +     + + +    +I+G+   G  ++AL+ F  + Q  +     T 
Sbjct: 305 YFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTF 364

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI  A   ++    GK++H  I K   D    V + ++ MYA CG ++ A +VF+ + E
Sbjct: 365 SSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITE 424

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D + WNS++  C+ +G   EA+ LF QM     + D  +    LSAC +   +  G + 
Sbjct: 425 KDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEI 484

Query: 186 FYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
             LM       P R++ Y  ++++ +  + G LN +    + M      S + +++SA  
Sbjct: 485 HGLMIKG----PLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVS-WNSIISAYG 539

Query: 244 VHGN 247
            HG+
Sbjct: 540 NHGD 543



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D Q ++ ++  ++ + WN ++ G+   G    A+K F EMR + I  +  T   ++    
Sbjct: 111 DAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCA 170

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
             +    G Q+H +    G + +  V N L+ MY+ C  +  A K+F +  + DLVSWN 
Sbjct: 171 SEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNG 230

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
           ++ G   +G   EA  LF  M    IKPD  TF
Sbjct: 231 IISGYVQNGLMGEAEHLFRGMISAGIKPDSITF 263



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 78/167 (46%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + ++ +    + +SWN II+G+   G   +A   F  M  AGI  D  T 
Sbjct: 204 YSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITF 263

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S +  +  +   K  K++H  I +     +VF+++ L+ +Y  C  +  A K+      
Sbjct: 264 ASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSS 323

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            D V   +++ G   +G ++EA++ F  + +  +KP   TF  +  A
Sbjct: 324 FDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPA 370



 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 33/69 (47%)

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
           MY   G++ DA  +F ++      +WN ++ G    G    A+  + +M    + PD  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 166 FLVVLSACC 174
           F  V+ ACC
Sbjct: 61  FPYVVKACC 69


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/284 (36%), Positives = 167/284 (58%), Gaps = 1/284 (0%)

Query: 23  RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGK 82
           R RN +SWNA+IA +       +A   F  MR   + +D F   S++ A   +   ++GK
Sbjct: 158 RDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGK 217

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
            +H  I K G + +  +   ++ MY  CG +  A++VF+ + ++ + SWN ++ G A HG
Sbjct: 218 WIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHG 277

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEH 202
               A++LF++M++  + PDG TF+ VLSAC H+G +++G  YF  M     L+P   EH
Sbjct: 278 KGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPG-MEH 336

Query: 203 YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLW 262
           +  +V LLGRAG L EA   IN M  NP   V  AL+ AC++HGN E+  +  K+V++L 
Sbjct: 337 FGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELE 396

Query: 263 PNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           P++   YVLL+N+  +   W+D   +R LM +RG++K PG+S +
Sbjct: 397 PHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMI 440



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 102/212 (48%), Gaps = 7/212 (3%)

Query: 50  FSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI 109
           +S M    +  + FT   ++ A  +    +EGKQ+HA + K G+ ++ F  N L+ MY  
Sbjct: 82  YSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVN 141

Query: 110 CGAINDANKVFSSMDERDL--VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
             ++  A +VF +M +RD   VSWN+++          EA  LF++M+   +  D     
Sbjct: 142 FQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAA 201

Query: 168 VVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
            +LSAC   G +++G   + Y+ ++   L+   A   T ++ +  + G L +A    N +
Sbjct: 202 SMLSACTGLGALEQGKWIHGYIEKSGIELDSKLA---TTVIDMYCKCGCLEKASEVFNEL 258

Query: 227 SRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258
            +  G S +  ++    +HG  E A+   K +
Sbjct: 259 PQK-GISSWNCMIGGLAMHGKGEAAIELFKEM 289



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 8/173 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C        V++ +  +   SWN +I G    G GE A++ F EM +  +  D 
Sbjct: 239 IDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDG 298

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T  +++ A       +EGK     + ++ G    +     +V +    G + +A K+ +
Sbjct: 299 ITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLIN 358

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT--EIKPDGTTFLVVLS 171
            M    D     +L+  C  HG +    +L EQ+ K   E++P  +   V+L+
Sbjct: 359 EMPVNPDAGVLGALVGACRIHGNT----ELGEQIGKKVIELEPHNSGRYVLLA 407


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 172/294 (58%), Gaps = 2/294 (0%)

Query: 13  LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           L+  + Y  VR  N +SW+A+I GF + G GE+AL+ F  M+ A +  +  TI S++   
Sbjct: 363 LEKTDEYPMVRP-NVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVC 421

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
             ++    G+++H  + +   D N+ V N L+ MY   G+  + N VF  ++ +DL+SWN
Sbjct: 422 AELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWN 481

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           +++ G   HG    A++ F+QM K   +PDG TF+ VLSAC HAG + +G + F  M  +
Sbjct: 482 TMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKE 541

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
             +E P+ EHY  +V LLGRAG L EA   + SM   P   V+ ALL++C++H N E+A 
Sbjct: 542 FRVE-PQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAE 600

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +A ++ +L       Y+LLSN+  A+  W+D+  +R     +G++K PG SW+
Sbjct: 601 ETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWI 654



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 86/165 (52%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N + WN+I+      G  E+AL+ +  MR+ G+  D FT   ++ A  ++   K  + +H
Sbjct: 99  NLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVH 158

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
             + ++G+  N+ V N L+ MY   G ++DA KVF  M  R  VSWN+++ G A +    
Sbjct: 159 GHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCH 218

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
            A ++F  M    ++P+  T+  +LS+    G   + ++ F  MR
Sbjct: 219 GASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMR 263



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 98/191 (51%), Gaps = 4/191 (2%)

Query: 4   LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           L Y    +S  F+ + S+    N ++W ++++     G   + ++ F  MR  GI     
Sbjct: 213 LNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAE 272

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            +  ++     ++ F EGK +H  + K G+++ +FV+N L+ +Y   G +N A  +F  +
Sbjct: 273 ALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEI 332

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE----IKPDGTTFLVVLSACCHAGFI 179
             +++VSWN+L+   A  G+  EA  +F Q++KT+    ++P+  ++  V+      G  
Sbjct: 333 KTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQG 392

Query: 180 DKGLQYFYLMR 190
           ++ L+ F  M+
Sbjct: 393 EEALELFRRMQ 403



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 27/160 (16%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER---DLVSWNSLLLGC 138
           +Q+H+ I   G   + F+  R+V +YA  G ++DA +VF         +L+ WNS+L   
Sbjct: 51  QQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRAN 110

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-----------HAGFIDKGLQYFY 187
             HGY  EA++++ +M+K  +  DG TF +V+ AC            H   ++ G Q+  
Sbjct: 111 VAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNL 170

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
            + N+             ++G+ G+ G +++A      M+
Sbjct: 171 HVGNE-------------LMGMYGKIGRMDDARKVFERMA 197



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 2/151 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  S  +   V+  +  ++ ISWN ++AG+   G GE A++ F +M + G + D  T 
Sbjct: 456 YTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTF 515

Query: 66  TSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +++ A        EG+++   +I +   +  +     +V +    G + +A+KV  SM 
Sbjct: 516 VAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMP 575

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
            E +   W +LL  C  H  +  A +   Q+
Sbjct: 576 VEPNACVWGALLNSCRMHKNTEVAEETASQI 606


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    + Q ++  +  +  +SWNAI++GF      E+A K FSEM   G+  D+FT 
Sbjct: 497 YCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTF 556

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++     ++  + GKQ+H  I K     + ++ + LV MYA CG + D+  VF  +++
Sbjct: 557 ATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEK 616

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSWN+++ G A HG   EA+++FE+MQK  + P+  TF+ VL AC H G  D G +Y
Sbjct: 617 RDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRY 676

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+LM     LE P+ EH+  +V +LGR+    EA  FINSM       ++K LLS C++ 
Sbjct: 677 FHLMTTHYKLE-PQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIR 735

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + EIA  +A  VL L P+D ++Y+LLSNV   +  W D    R L+    ++K+PG SW
Sbjct: 736 QDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSW 795

Query: 306 V 306
           +
Sbjct: 796 I 796



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 96/179 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C + ++   ++  ++ ++ +SWNAIIA     G  +  +  F+EM + G+  D FT 
Sbjct: 396 YGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTY 455

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +   + G  +H  + K G  S+ FV + +V MY  CG I++A K+   +  
Sbjct: 456 GSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGG 515

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           + +VSWN++L G + +  S EA + F +M    +KPD  TF  VL  C +   I+ G Q
Sbjct: 516 QQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ 574



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 127/259 (49%), Gaps = 7/259 (2%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++ +S  D +  +  +      + NA++ G    G G +A+  F  M ++ I  D  +
Sbjct: 294 VYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVS 353

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++ +  A     G+ +G+Q+H L  K G+D ++ V N ++ +Y  C A+ +A  +F  M 
Sbjct: 354 LSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMK 413

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++D VSWN+++     +G+  + +  F +M +  +KPD  T+  VL AC       + L+
Sbjct: 414 QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAAL----RSLE 469

Query: 185 YFYLMRNDASLEPPRAEHYTA--IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           Y  ++ +        ++ + A  +V +  + G ++EA+   + +      S + A+LS  
Sbjct: 470 YGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS-WNAILSGF 528

Query: 243 QVHGNREIAVRSAKRVLDL 261
            ++   E A +    +LD+
Sbjct: 529 SLNKESEEAQKFFSEMLDM 547



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 97/193 (50%), Gaps = 4/193 (2%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SWNA+++G+C  G  ++++  F EM + G+  D  T   ++ +   +     G Q+HAL
Sbjct: 115 VSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHAL 174

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
             K G + +V   + LV MY  C +++DA   F  M ER+ VSW + + GC  +      
Sbjct: 175 AVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRG 234

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAI 206
           ++LF +MQ+  +     ++     +C     ++ G Q + + ++N  S +       TAI
Sbjct: 235 LELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG---TAI 291

Query: 207 VGLLGRAGFLNEA 219
           V +  +A  L +A
Sbjct: 292 VDVYAKANSLTDA 304



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 81/168 (48%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D    +  +  RN +SW A IAG        + L+ F EM++ G+ +   + 
Sbjct: 194 YGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSY 253

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S   +   +S    G+Q+HA   K  + S+  V   +V +YA   ++ DA + F  +  
Sbjct: 254 ASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPN 313

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
             + + N++++G    G   EA+ LF+ M ++ I+ D  +   V SAC
Sbjct: 314 HTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSAC 361



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 2/126 (1%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
           N ++  Y+  G I+ A  +F  M + D+VSWN+L+ G    G  +E+V LF +M +  + 
Sbjct: 87  NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146

Query: 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220
           PD TTF V+L +C     +  G+Q   L          R    +A+V + G+   L++A 
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTG--SALVDMYGKCRSLDDAL 204

Query: 221 SFINSM 226
            F   M
Sbjct: 205 CFFYGM 210


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/291 (38%), Positives = 176/291 (60%), Gaps = 3/291 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  + TR+ + WN+IIAGF   G G  A++ F  M+ AG   +  T+TS++ A   +
Sbjct: 223 RRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGM 282

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G+Q+HA + K  YD ++ + N L+ MY  CG++ DA+ +F  M +RD++SW++++
Sbjct: 283 VMLEAGRQVHAHVLK--YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMV 340

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A +G S EA+++F+ M+   + P+  T + VL AC HAG ++ G  YF  M+    +
Sbjct: 341 SGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGI 400

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           +P R EH+  +V LLGRAG L+EA  FI+ MS  P   +++ LL AC++H N  +A  +A
Sbjct: 401 QPER-EHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAA 459

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +L L P+D    VLLSN       W DA      M +RG+RK+PG SW+
Sbjct: 460 REILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWI 510



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 112/221 (50%), Gaps = 16/221 (7%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNL-GSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           D   ++  +  RN ++W  ++A   +  G  ++AL+    MR+ G+  + +T +S++GA 
Sbjct: 122 DALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGAC 181

Query: 73  ---GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
              G+++       +HA   K G DS+VFV++ L+  Y   G ++   +VF  M  RDLV
Sbjct: 182 TTPGMLTA------VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLV 235

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYL 188
            WNS++ G A  G    A++LF +M+      +  T   VL AC     ++ G Q + ++
Sbjct: 236 VWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHV 295

Query: 189 MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
           ++ D  L       + A++ +  + G L +A++  + M + 
Sbjct: 296 LKYDRDLIL-----HNALLDMYCKCGSLEDADALFHRMPQR 331



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 97  VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH-HGYSREAVQLFEQMQ 155
           +FV N L  MYA  G ++DA ++F  M  R++V+W +++   A   G  +EA++    M+
Sbjct: 104 LFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMR 163

Query: 156 KTEIKPDGTTFLVVLSACCHAGFI 179
           +  + P+  TF  VL AC   G +
Sbjct: 164 RDGVAPNAYTFSSVLGACTTPGML 187



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 10/171 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D   ++  +  R+ ISW+ +++G    G   +AL+ F  M+  G+  ++ T+
Sbjct: 312 YCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTM 371

Query: 66  TSIVGAIG----VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             ++ A      V  G+   + M  L    G        N +V +    G +++A +   
Sbjct: 372 VGVLFACSHAGLVEDGWHYFRSMKRL---FGIQPEREHHNCMVDLLGRAGKLDEAVEFIH 428

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            M  E D V W +LL  C  H  +  A     ++ K E  PD     V+LS
Sbjct: 429 GMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLE--PDDQGARVLLS 477


>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g47840
 gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
 gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 706

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 179/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C + +    ++  +R R+ ISW+ II G+C  G GE+  K FS MRQ+G     F +
Sbjct: 355 YSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFAL 414

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++   G ++  + G+Q+HAL    G + N  V++ L+ MY+ CG+I +A+ +F   D 
Sbjct: 415 ASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDR 474

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VS  +++ G A HG S+EA+ LFE+  K   +PD  TF+ VL+AC H+G +D G  Y
Sbjct: 475 DDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQLDLGFHY 534

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M+   ++ P + EHY  +V LL RAG L++AE  IN MS      V+  LL AC+  
Sbjct: 535 FNMMQETYNMRPAK-EHYGCMVDLLCRAGRLSDAEKMINEMSWKKDDVVWTTLLIACKAK 593

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E   R+A+R+L+L P      V L+N+  +T   ++A ++R  M  +G+ K+PG+S 
Sbjct: 594 GDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKEPGWSS 653

Query: 306 V 306
           +
Sbjct: 654 I 654



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 84/156 (53%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+S +  RN ++W AII G  + G  ++ L  FSEM ++    D +T    + A   +  
Sbjct: 165 VFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQ 224

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K GK +H  +   G+ + + V N L  MY  CG + D   +F +M ERD+VSW SL++ 
Sbjct: 225 VKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVA 284

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
               G   +AV+ F +M+ +++ P+  TF  + SAC
Sbjct: 285 YKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSAC 320



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 121/252 (48%), Gaps = 13/252 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C    D   ++ ++  R+ +SW ++I  +  +G   +A++ F +MR + +  +  T 
Sbjct: 254 YTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTF 313

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+  A   +S    G+Q+H  +  +G + ++ V N ++ MY+ CG +  A+ +F  M  
Sbjct: 314 ASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRC 373

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD++SW++++ G    G+  E  + F  M+++  KP       +LS   +   I+ G Q 
Sbjct: 374 RDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGGRQV 433

Query: 186 FYL-----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
             L     +  ++++        ++++ +  + G + EA        R+   S+  A+++
Sbjct: 434 HALALCFGLEQNSTVR-------SSLINMYSKCGSIKEASMIFGETDRDDIVSL-TAMIN 485

Query: 241 ACQVHGNREIAV 252
               HG  + A+
Sbjct: 486 GYAEHGKSKEAI 497



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 2/148 (1%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMR--QAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           +SW +II  +    + ++AL  FS MR     +  D   ++ ++ A G  S    G+ +H
Sbjct: 72  VSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVLKACGQSSNIAYGESLH 131

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
           A   K    S+V+V + L+ MY   G I+ + +VFS M  R+ V+W +++ G  H G  +
Sbjct: 132 AYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRYK 191

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           E +  F +M ++E   D  TF + L AC
Sbjct: 192 EGLTYFSEMSRSEELSDTYTFAIALKAC 219



 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 66/173 (38%), Gaps = 48/173 (27%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE--IKPDGTTFLV 168
           G +  A +VF  M   D+VSW S++        S EA+ LF  M+  +  + PD +   V
Sbjct: 54  GNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSV 113

Query: 169 VLSAC-----------CHA------------------------GFIDKGLQYFYLMRNDA 193
           VL AC            HA                        G IDK  + F  M    
Sbjct: 114 VLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEM---- 169

Query: 194 SLEPPR-AEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS---VYKALLSAC 242
              P R A  +TAI+  L  AG   E  ++ + MSR+   S    +   L AC
Sbjct: 170 ---PFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKAC 219


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/283 (37%), Positives = 177/283 (62%), Gaps = 2/283 (0%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           ++ + W  +++G    G  E+ALK + EMR  G+  D  T  +++    V+S  +EG+ +
Sbjct: 695 KSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAI 754

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER-DLVSWNSLLLGCAHHGY 143
           H+LIF + +D +    N L+ MYA CG +  +++VF  M  R ++VSWNSL+ G A +GY
Sbjct: 755 HSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGY 814

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY 203
           + +A+++F+ M+++ I PD  TFL VL+AC HAG +  G + F +M     +E  R +H 
Sbjct: 815 AEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEA-RVDHV 873

Query: 204 TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263
             +V LLGR G+L EA+ FI + +  P   ++ +LL AC++HG+      SA+++++L P
Sbjct: 874 ACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEP 933

Query: 264 NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            + + YVLLSN+  +  CW+ A  +R +M +RG++K PGYSW+
Sbjct: 934 QNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWI 976



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 95/179 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C+       V+ ++  +N + WNA+I G+ + G   + ++ F +M+ +G +ID FT 
Sbjct: 372 YSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTF 431

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++         + G Q H++I K     N+FV N LV MYA CGA+ DA ++F  M +
Sbjct: 432 TSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCD 491

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           RD V+WN+++          EA  LF++M    I  DG      L AC H   + +G Q
Sbjct: 492 RDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQ 550



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 120/227 (52%), Gaps = 8/227 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I TY R     D + ++  + + + ++WN +I+G    G    A++ F  MR++ +    
Sbjct: 268 INTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTR 327

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ AIG+++    G  +HA   K+G  SN++V + LV MY+ C  +  A KVF +
Sbjct: 328 STLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEA 387

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++E++ V WN+++ G AH+G S + ++LF  M+ +    D  TF  +LS C  +  ++ G
Sbjct: 388 LEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMG 447

Query: 183 LQYFYLMRNDASLEPPRAEHY---TAIVGLLGRAGFLNEAESFINSM 226
            Q+  ++     ++   A++     A+V +  + G L +A      M
Sbjct: 448 SQFHSII-----IKKKLAKNLFVGNALVDMYAKCGALEDARQIFERM 489



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +  D + ++  +  R+ ++WN II  +    +  +A   F  M   GI  D   +
Sbjct: 473 YAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACL 532

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + A   + G  +GKQ+H L  K G D ++   + L+ MY+ CG I DA KVFSS+ E
Sbjct: 533 ASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPE 592

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
             +VS N+L+ G + +    EAV LF++M    + P   TF  ++ AC     +  G Q+
Sbjct: 593 WSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQF 651

Query: 186 F-YLMRNDASLEPPRAEHY-TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
              + +   S E    E+   +++G+   +  + EA +  + +S      ++  ++S   
Sbjct: 652 HGQITKRGFSSE---GEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHS 708

Query: 244 VHGNREIAVRSAKRVL-DLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294
            +G  E A++  K +  D    D A +V +  V        +   I +L+++
Sbjct: 709 QNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFH 760



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 117/262 (44%), Gaps = 14/262 (5%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           ++  +WN++++ + ++G   + L+ F  + +  I  + FT + ++      +  + G+Q+
Sbjct: 123 KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQI 182

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H  + K+G + N +    LV MYA C  I+DA +VF  + + + V W  L  G    G  
Sbjct: 183 HCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLP 242

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
            EAV +FE+M+    +PD   F+ V++     G +      F        +  P    + 
Sbjct: 243 EEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLF------GEMSSPDVVAWN 296

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL---LSACQVHGNREIA--VRSAKRVL 259
            ++   G+ G    A  +  +M ++   S    L   LSA  +  N ++   V +    L
Sbjct: 297 VMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKL 356

Query: 260 DLWPNDPAIYVLLSNVSKATDC 281
            L  N   IYV  S VS  + C
Sbjct: 357 GLASN---IYVGSSLVSMYSKC 375



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 5/169 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C        V+  +R R N +SWN++I G+   G  E ALK F  MRQ+ I  D  T
Sbjct: 777 YAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEIT 836

Query: 65  ITSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
              ++ A        +G+++   +I + G ++ V     +V +    G + +A+    + 
Sbjct: 837 FLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQ 896

Query: 124 DER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           + + D   W+SLL  C  HG         E++   E++P  ++  V+LS
Sbjct: 897 NLKPDARLWSSLLGACRIHGDDIRGEISAEKL--IELEPQNSSAYVLLS 943



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK +H+    +G DS   + N +V +YA C  ++ A K F  + E+D+ +WNS+L   + 
Sbjct: 79  GKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSS 137

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G   + ++ F  + + +I P+  TF +VLS C     ++ G Q
Sbjct: 138 IGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQ 181


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    + Q ++  +  +  +SWNAI++GF      E+A K FSEM   G+  D+FT 
Sbjct: 497 YCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTF 556

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++     ++  + GKQ+H  I K     + ++ + LV MYA CG + D+  VF  +++
Sbjct: 557 ATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEK 616

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSWN+++ G A HG   EA+++FE+MQK  + P+  TF+ VL AC H G  D G +Y
Sbjct: 617 RDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRY 676

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+LM     LE P+ EH+  +V +LGR+    EA  FINSM       ++K LLS C++ 
Sbjct: 677 FHLMTTHYKLE-PQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIR 735

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + EIA  +A  VL L P+D ++Y+LLSNV   +  W D    R L+    ++K+PG SW
Sbjct: 736 QDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSW 795

Query: 306 V 306
           +
Sbjct: 796 I 796



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 96/179 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C + ++   ++  ++ ++ +SWNAIIA     G  +  +  F+EM + G+  D FT 
Sbjct: 396 YGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTY 455

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +   + G  +H  + K G  S+ FV + +V MY  CG I++A K+   +  
Sbjct: 456 GSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGG 515

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           + +VSWN++L G + +  S EA + F +M    +KPD  TF  VL  C +   I+ G Q
Sbjct: 516 QQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ 574



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 127/259 (49%), Gaps = 7/259 (2%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++ +S  D +  +  +      + NA++ G    G G +A+  F  M ++ I  D  +
Sbjct: 294 VYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVS 353

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++ +  A     G+ +G+Q+H L  K G+D ++ V N ++ +Y  C A+ +A  +F  M 
Sbjct: 354 LSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMK 413

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++D VSWN+++     +G+  + +  F +M +  +KPD  T+  VL AC       + L+
Sbjct: 414 QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAAL----RSLE 469

Query: 185 YFYLMRNDASLEPPRAEHYTA--IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           Y  ++ +        ++ + A  +V +  + G ++EA+   + +      S + A+LS  
Sbjct: 470 YGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS-WNAILSGF 528

Query: 243 QVHGNREIAVRSAKRVLDL 261
            ++   E A +    +LD+
Sbjct: 529 SLNKESEEAQKFFSEMLDM 547



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 97/193 (50%), Gaps = 4/193 (2%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SWNA+++G+C  G  ++++  F EM + G+  D  T   ++ +   +     G Q+HAL
Sbjct: 115 VSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHAL 174

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
             K G + +V   + LV MY  C +++DA   F  M ER+ VSW + + GC  +      
Sbjct: 175 AVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRG 234

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAI 206
           ++LF +MQ+  +     ++     +C     ++ G Q + + ++N  S +       TAI
Sbjct: 235 LELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG---TAI 291

Query: 207 VGLLGRAGFLNEA 219
           V +  +A  L +A
Sbjct: 292 VDVYAKANSLTDA 304



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 81/168 (48%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D    +  +  RN +SW A IAG        + L+ F EM++ G+ +   + 
Sbjct: 194 YGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSY 253

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S   +   +S    G+Q+HA   K  + S+  V   +V +YA   ++ DA + F  +  
Sbjct: 254 ASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPN 313

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
             + + N++++G    G   EA+ LF+ M ++ I+ D  +   V SAC
Sbjct: 314 HTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSAC 361



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 2/126 (1%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
           N ++  Y+  G I+ A  +F  M + D+VSWN+L+ G    G  +E+V LF +M +  + 
Sbjct: 87  NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146

Query: 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220
           PD TTF V+L +C     +  G+Q   L          R    +A+V + G+   L++A 
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTG--SALVDMYGKCRSLDDAL 204

Query: 221 SFINSM 226
            F   M
Sbjct: 205 CFFYGM 210


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 183/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +    + V+  +  +N +SW A++ G+   G  E+A+K FS+M++ GI+ D FT+
Sbjct: 320 YCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTL 379

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   ++  +EG Q HA     G  S + V N LV +Y  CG+I D++++F+ +  
Sbjct: 380 GSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISF 439

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D V+W +L+ G A  G + E + LFE M    +KPD  TF+ VLSAC  AG ++KG Q 
Sbjct: 440 KDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQI 499

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M N+  + P + +HYT ++ L  RAG + EA +FIN M  +P    +  LLS+C+ +
Sbjct: 500 FESMINEHGIVPIQ-DHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFY 558

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN +I   +A+ +++L P++ A YVLLS+V  A   W++   +R  M ++G+RK+PG SW
Sbjct: 559 GNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSW 618

Query: 306 V 306
           +
Sbjct: 619 I 619



 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 138/278 (49%), Gaps = 5/278 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+   RC    D + ++  +R R+ ISW ++I GF   G    A+  F EM+   + +D 
Sbjct: 216 IMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQ 275

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T  S++ A G +   +EGKQ+HA I +  Y  N+FV + LV MY  C  I  A  VF  
Sbjct: 276 YTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKK 335

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  +++VSW ++L+G   +GYS EAV+ F  MQK  I+PD  T   V+S+C +   +++G
Sbjct: 336 MTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEG 395

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            Q+         +      +  A+V L G+ G + ++    N +S       + AL+S  
Sbjct: 396 AQFHARALTSGLISFITVSN--ALVTLYGKCGSIEDSHRLFNEISFK-DEVTWTALVSGY 452

Query: 243 QVHG--NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
              G  N  I +  +     L P+      +LS  S+A
Sbjct: 453 AQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRA 490



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 133/283 (46%), Gaps = 38/283 (13%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ--AGIDIDYF 63
           YS+     + + ++ ++  R+ +SWN++I+G+   G   Q++K ++ M +     +++  
Sbjct: 85  YSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRI 144

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI-------------- 109
           T ++++         K G+Q+H  + K G+ S VFV + LV MY+               
Sbjct: 145 TFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDEL 204

Query: 110 -----------------CGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
                            CG + D+ ++F  M ERD +SW S++ G   +G  R+A+ +F 
Sbjct: 205 PEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFR 264

Query: 153 QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLG 211
           +M+   ++ D  TF  VL+AC     + +G Q + Y++R D       A   +A+V +  
Sbjct: 265 EMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVA---SALVDMYC 321

Query: 212 RAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           +   +  AE+    M+     S + A+L     +G  E AV++
Sbjct: 322 KCKNIKSAEAVFKKMTCKNVVS-WTAMLVGYGQNGYSEEAVKT 363



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 5/131 (3%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F + K +H+ I K       F+ N L+  YA  G+I  A KVF  M   +L SWN++L  
Sbjct: 25  FTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSA 84

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM-RNDASLE 196
            +  G   E   LF+ M +     DG ++  ++S     G I + ++ + LM +ND S  
Sbjct: 85  YSKLGRVSEMEYLFDAMPRR----DGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFN 140

Query: 197 PPRAEHYTAIV 207
             R    T ++
Sbjct: 141 LNRITFSTLLI 151



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 78/177 (44%), Gaps = 14/177 (7%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C S  D   +++ +  +++++W A+++G+   G   + +  F  M   G+  D 
Sbjct: 418 VTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDK 477

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR---LVFMYAICGAINDANKV 119
            T   ++ A       ++G Q+   +  I     V +Q+    ++ +++  G I +A   
Sbjct: 478 VTFIGVLSACSRAGLVEKGNQIFESM--INEHGIVPIQDHYTCMIDLFSRAGRIEEARNF 535

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHG---YSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            + M    D +SW +LL  C  +G     + A +        E+ P  T   V+LS+
Sbjct: 536 INKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFL-----MELDPHNTASYVLLSS 587


>gi|225457491|ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070
           [Vitis vinifera]
 gi|296087996|emb|CBI35279.3| unnamed protein product [Vitis vinifera]
          Length = 598

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 177/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  +    +  +  R+  +WN + AG  N G   +AL+   EMR++G+ ++ FT+
Sbjct: 294 YLKCGSLENGIKAFEEMVERDVCTWNQMAAGCLNCGKPGRALELIEEMRRSGVRMNKFTL 353

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            + + A   ++  +EGK+ H L  K+G D +V V N L+ MYA CG++ DA KVF +++ 
Sbjct: 354 ATALTACANLASLEEGKKAHGLRIKLGNDVDVCVDNALLDMYAKCGSMGDALKVFGTVEA 413

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R +VSW ++++G A +G +R+A+++FEQM+     P+  TF+ VL AC   G I++G +Y
Sbjct: 414 RSVVSWTTMIMGFAQNGQARKALEIFEQMRAEGKAPNYITFICVLYACSQGGLINEGWEY 473

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  + P   +HY  +V +LGRAG + EA   I  M       V++ LL AC+VH
Sbjct: 474 FLSMDRDHGISPGE-DHYACMVDMLGRAGHIKEARELIRRMPFQASVLVWQTLLGACRVH 532

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E  + +AK+ L L  +D + YV+LSN+      W   G +R LM  R ++K PG SW
Sbjct: 533 GDVETGLLAAKQALSLDKHDSSTYVVLSNMFADGRNWKGVGSLRELMETRDVKKMPGSSW 592

Query: 306 V 306
           +
Sbjct: 593 I 593



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 1/165 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+ + R ++ +SWNA++AG      GE     +  M   G+  D F  + ++  +  +  
Sbjct: 206 VFEACRGKDVVSWNAVMAGLVQFCCGEVP-GFWRRMCCEGVKPDNFAFSGVLSGLAALGD 264

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G Q+H  + K G+   V + N LV MY  CG++ +  K F  M ERD+ +WN +  G
Sbjct: 265 GGMGVQVHGQLVKCGHGGEVCIGNSLVDMYLKCGSLENGIKAFEEMVERDVCTWNQMAAG 324

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           C + G    A++L E+M+++ ++ +  T    L+AC +   +++G
Sbjct: 325 CLNCGKPGRALELIEEMRRSGVRMNKFTLATALTACANLASLEEG 369



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 18/194 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        ++     RN +SW+ +IAGF        AL  FS+M  AG++I+ FT+
Sbjct: 80  YAKCGHLPHAHKLFDHFPHRNAVSWSVLIAGFVQHNRPSCALVLFSQMHAAGVNINEFTL 139

Query: 66  TSIVGAIGVI---SGFKEG----------KQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
            S + A  +    S   EG           Q++A + ++G++ NVF+ N  VFM A+  +
Sbjct: 140 VSALHACSLYDNDSDNNEGYYYSYYLSRLYQVYAFVVRLGFEWNVFLMN--VFMTALIRS 197

Query: 113 --INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
             + +A +VF +   +D+VSWN+++ G        E    + +M    +KPD   F  VL
Sbjct: 198 RKLAEALEVFEACRGKDVVSWNAVMAGLVQFCCG-EVPGFWRRMCCEGVKPDNFAFSGVL 256

Query: 171 SACCHAGFIDKGLQ 184
           S     G    G+Q
Sbjct: 257 SGLAALGDGGMGVQ 270



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%)

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           + G+ +HA + K    +++F+ N ++ MYA CG +  A+K+F     R+ VSW+ L+ G 
Sbjct: 52  QHGRALHAKLIKGPLHNSLFLNNHILNMYAKCGHLPHAHKLFDHFPHRNAVSWSVLIAGF 111

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
             H     A+ LF QM    +  +  T +  L AC
Sbjct: 112 VQHNRPSCALVLFSQMHAAGVNINEFTLVSALHAC 146


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 172/294 (58%), Gaps = 2/294 (0%)

Query: 13  LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           L+  + Y  VR  N +SW+A+I GF + G GE+AL+ F  M+ A +  +  TI S++   
Sbjct: 363 LEKTDEYPMVRP-NVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVC 421

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
             ++    G+++H  + +   D N+ V N L+ MY   G+  + N VF  ++ +DL+SWN
Sbjct: 422 AELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWN 481

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           +++ G   HG    A++ F+QM K   +PDG TF+ VLSAC HAG + +G + F  M  +
Sbjct: 482 TMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKE 541

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
             +E P+ EHY  +V LLGRAG L EA   + SM   P   V+ ALL++C++H N E+A 
Sbjct: 542 FRVE-PQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAE 600

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +A ++ +L       Y+LLSN+  A+  W+D+  +R     +G++K PG SW+
Sbjct: 601 ETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWI 654



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 86/165 (52%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N + WN+I+      G  E+AL+ +  MR+ G+  D FT   ++ A  ++   K  + +H
Sbjct: 99  NLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVH 158

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
             + ++G+  N+ V N L+ MY   G ++DA KVF  M  R  VSWN+++ G A +    
Sbjct: 159 GHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCH 218

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
            A ++F  M    ++P+  T+  +LS+    G   + ++ F  MR
Sbjct: 219 GASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMR 263



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 98/191 (51%), Gaps = 4/191 (2%)

Query: 4   LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           L Y    +S  F+ + S+    N ++W ++++     G   + ++ F  MR  GI     
Sbjct: 213 LNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAE 272

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            +  ++     ++ F EGK +H  + K G+++ +FV+N L+ +Y   G +N A  +F  +
Sbjct: 273 ALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEI 332

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE----IKPDGTTFLVVLSACCHAGFI 179
             +++VSWN+L+   A  G+  EA  +F Q++KT+    ++P+  ++  V+      G  
Sbjct: 333 KTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQG 392

Query: 180 DKGLQYFYLMR 190
           ++ L+ F  M+
Sbjct: 393 EEALELFRRMQ 403



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 27/160 (16%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER---DLVSWNSLLLGC 138
           +Q+H+ I   G   + F+  R+V +YA  G ++DA +VF         +L+ WNS+L   
Sbjct: 51  QQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRAN 110

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-----------HAGFIDKGLQYFY 187
             HGY  EA++++ +M+K  +  DG TF +V+ AC            H   ++ G Q+  
Sbjct: 111 VAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNL 170

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
            + N+             ++G+ G+ G +++A      M+
Sbjct: 171 HVGNE-------------LMGMYGKIGRMDDARKVFERMA 197



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 77/165 (46%), Gaps = 2/165 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  S  +   V+  +  ++ ISWN ++AG+   G GE A++ F +M + G + D  T 
Sbjct: 456 YTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTF 515

Query: 66  TSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +++ A        EG+++   +I +   +  +     +V +    G + +A+KV  SM 
Sbjct: 516 VAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMP 575

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
            E +   W +LL  C  H  +  A +   Q+     +  G+  L+
Sbjct: 576 VEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLL 620


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +    + V+  +R +N ISW A++ G+   G  E+A++ F +M++  I  D FT+
Sbjct: 315 YCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTL 374

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   ++  +EG Q H      G    V V N L+ +Y  CG++  A+++F  M  
Sbjct: 375 GSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKI 434

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSW +L+ G A  G + E + LFE M    I PDG TF+ VLSAC  AG ++KG  Y
Sbjct: 435 RDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHY 494

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  +  + P   +HYT ++ LL RAG L EA++FIN M  +P    +  LLS+C+++
Sbjct: 495 FECMVKEHRITPI-PDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLN 553

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN EI   +A+ +  L P +PA Y+LLS++  A   WDD   +R  M   G++K+PG+SW
Sbjct: 554 GNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSW 613

Query: 306 V 306
           +
Sbjct: 614 I 614



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 135/273 (49%), Gaps = 5/273 (1%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           RC   ++ + ++ ++  ++ ISW  II G    G  ++A+  F EM   G  +D FT  S
Sbjct: 216 RCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGS 275

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           ++ A G      EGKQ+HA I +  Y  N+FV + L+ MY  C  +  A  VF  M  ++
Sbjct: 276 VLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKN 335

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
           ++SW ++L+G   +GYS EAV++F  MQ+ EI PD  T   V+S+C +   +++G Q+  
Sbjct: 336 VISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFH- 394

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG- 246
             +  AS          A++ L G+ G L  A    + M      S + AL+S     G 
Sbjct: 395 -GQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVS-WTALVSGYAQFGK 452

Query: 247 -NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
            N  I++        + P+      +LS  S+A
Sbjct: 453 ANETISLFETMLAHGIVPDGVTFVGVLSACSRA 485



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 35/221 (15%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFT 64
           YS+     D Q V+ S+   + +SWN++++G+   G   ++++ ++ M + G ++++  T
Sbjct: 81  YSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRIT 140

Query: 65  ITSIVGAIGVISGFKE-GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS-- 121
            ++++  +    GF + G+Q+H  IFK GY S +FV + LV MYA  G INDAN++F   
Sbjct: 141 FSTML-ILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEI 199

Query: 122 -----------------------------SMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
                                        +M E+D +SW +++ G   +G  +EAV  F+
Sbjct: 200 PEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFK 259

Query: 153 QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
           +M       D  TF  VL+AC     +D+G Q + Y++R D
Sbjct: 260 EMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTD 300



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 5/156 (3%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           + A +   C   +  Q  K    + +   + + F   +++   G +   K  +     +F
Sbjct: 8   YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARN----VF 63

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
                 N+F  N L+  Y+  G + D  +VF SM   D+VSWNSLL G A +G   E+V+
Sbjct: 64  DHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVR 123

Query: 150 LFEQMQKT-EIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++  M K   +  +  TF  +L    + GF+D G Q
Sbjct: 124 VYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQ 159



 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 34/172 (19%), Positives = 69/172 (40%), Gaps = 4/172 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S      ++  ++ R+++SW A+++G+   G   + +  F  M   GI  D 
Sbjct: 413 ITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDG 472

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR-LVFMYAICGAINDANKVFS 121
            T   ++ A       ++G      + K    + +      ++ + +  G + +A    +
Sbjct: 473 VTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFIN 532

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            M    D + W +LL  C  +G         E + K E  P      ++LS+
Sbjct: 533 QMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLE--PQNPASYILLSS 582


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 184/302 (60%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C    D   V+ S+  R+ ++W+++ AG+      EQAL  F +  + G+  D F 
Sbjct: 209 VYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFL 268

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++S++ A   ++   EGKQM+AL+ K G+ SN+FV + L+ MYA CG I ++ KVF  ++
Sbjct: 269 MSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE 328

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +R++V WN+++ G + H  S E + LFE+MQ+  + P+  TF+ VLSAC H G + KG +
Sbjct: 329 KRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQK 388

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF LM  +  L  P   HY+ +V  L RAG + EA   I+ +  N   S++ +LL++C+ 
Sbjct: 389 YFDLMTKEHHL-APNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRT 447

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN E+A  +AK++ D+ P++   Y+LLSN+  A   WD+   +R L+    ++K+ G S
Sbjct: 448 HGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKS 507

Query: 305 WV 306
           W+
Sbjct: 508 WI 509



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 130/272 (47%), Gaps = 9/272 (3%)

Query: 6   YSRCDSSLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS+C  S+DF + V+  + +R+ +SWN +I      G   +AL    +M++ G     FT
Sbjct: 109 YSKC-GSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFT 167

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I+S++ A        E + +HA   K   D NVFV   L+ +YA CG + DA  VF SM 
Sbjct: 168 ISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP 227

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +R +V+W+S+  G   +    +A+ LF +  +T +K D      V+ AC     + +G Q
Sbjct: 228 DRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQ 287

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSACQ 243
              L+              ++++ +  + G + E+ + F +   RN    ++ A++S   
Sbjct: 288 MNALLSKSGFCSNIFVA--SSLIDMYAKCGGIEESYKVFRDVEKRN--VVLWNAMISGLS 343

Query: 244 VHGNR-EIAVRSAK-RVLDLWPNDPAIYVLLS 273
            H    E+ +   K + + L PND     +LS
Sbjct: 344 RHARSLEVMILFEKMQQMGLSPNDVTFVSVLS 375



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 7/156 (4%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           +GK  HA I  +G  +++   N L+ MY+ CG+++ A +VF  M  R LVSWN+++    
Sbjct: 82  QGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLT 141

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-CHAGFIDKGLQYFYLMRNDASLEPP 198
            +G   EA+ L  QMQ+        T   VL AC       +  L + + ++    L   
Sbjct: 142 QNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVF 201

Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
            A   TA++ +  + G + +A     SM   P  SV
Sbjct: 202 VA---TALLDVYAKCGLMKDAVCVFESM---PDRSV 231


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/291 (36%), Positives = 170/291 (58%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  RN +SWNA+IA +       +A   F  MR   + +D F   S++ A   +
Sbjct: 206 REVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGL 265

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              ++GK +H  I K G + +  +   ++ MY  CG +  A++VF+ + ++ + SWN ++
Sbjct: 266 GALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMI 325

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG    A++LF++M++  + PDG TF+ VLSAC H+G +++G  YF  M     L
Sbjct: 326 GGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGL 385

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           +P   EH+  +V LLGRAG L EA   IN M  NP   V  AL+ AC++HGN E+  +  
Sbjct: 386 KPG-MEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIG 444

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           K+V++L P++   YVLL+N+  +   W+D   +R LM +RG++K PG+S +
Sbjct: 445 KKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMI 495



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 116/274 (42%), Gaps = 36/274 (13%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +   +   +N I  G+         +  +S M    +  + FT   ++ A  +  
Sbjct: 75  EVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDY 134

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             +EGKQ+HA + K G+ ++ F  N L+ MY    ++  A +VF +M +RD+VSW SL+ 
Sbjct: 135 AIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLIT 194

Query: 137 GCAHHGYS-------------------------------REAVQLFEQMQKTEIKPDGTT 165
           G +  G+                                 EA  LF++M+   +  D   
Sbjct: 195 GYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFV 254

Query: 166 FLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
              +LSAC   G +++G   + Y+ ++   L+   A   T ++ +  + G L +A    N
Sbjct: 255 AASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLA---TTVIDMYCKCGCLEKASEVFN 311

Query: 225 SMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258
            + +  G S +  ++    +HG  E A+   K +
Sbjct: 312 ELPQK-GISSWNCMIGGLAMHGKGEAAIELFKEM 344



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 8/173 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C        V++ +  +   SWN +I G    G GE A++ F EM +  +  D 
Sbjct: 294 IDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDG 353

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T  +++ A       +EGK     + ++ G    +     +V +    G + +A K+ +
Sbjct: 354 ITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLIN 413

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT--EIKPDGTTFLVVLS 171
            M    D     +L+  C  HG +    +L EQ+ K   E++P  +   V+L+
Sbjct: 414 EMPVNPDAGVLGALVGACRIHGNT----ELGEQIGKKVIELEPHNSGRYVLLA 462


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 178/304 (58%), Gaps = 3/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+    L+   V+  + T + + WN+IIA F     G++AL  +  MR+ G   D 
Sbjct: 425 IDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQ 484

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+TS++ A   +S  + G+Q H  + K  +D ++ + N L+ MY  CG++ DA  +F+ 
Sbjct: 485 STLTSVLRACTSLSLLELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNR 542

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ++D++SW++++ G A +G+S EA+ LFE M+    KP+  T L VL AC HAG +++G
Sbjct: 543 MAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEG 602

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF  M N   ++P R EHY  ++ LLGRA  L++    I+ M+  P    ++ LL AC
Sbjct: 603 WYYFRSMNNLYGIDPGR-EHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDAC 661

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +   N ++A  +AK +L L P D   YVLLSN+   +  W+D  ++R  M  RGIRK+PG
Sbjct: 662 RARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPG 721

Query: 303 YSWV 306
            SW+
Sbjct: 722 CSWI 725



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 113/214 (52%), Gaps = 9/214 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++  +  RN +SW  +I+ + N    ++A++  + M + G+  + FT +S++ A   +
Sbjct: 340 QVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERL 399

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              K   Q+H+ I K+G +S+VFV++ L+ +Y+  G + +A KVF  M   D V WNS++
Sbjct: 400 YDLK---QLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSII 456

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
              A H    EA+ L++ M++     D +T   VL AC     ++ G Q + ++++ D  
Sbjct: 457 AAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQD 516

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
           L         A++ +  + G L +A+   N M++
Sbjct: 517 LILN-----NALLDMYCKCGSLEDAKFIFNRMAK 545



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 25/224 (11%)

Query: 46  ALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105
           A+     M + G+  D  T + ++         +EGK++H  IF  GY    F+ N L+ 
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
           MY     + +A  +F  M ER++VSW +++   ++   +  A++L   M +  + P+  T
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 166 FLVVLSAC--------CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLN 217
           F  VL AC         H+  +  GL+    +R             +A++ +  + G L 
Sbjct: 389 FSSVLRACERLYDLKQLHSWIMKVGLESDVFVR-------------SALIDVYSKMGELL 435

Query: 218 EAESFINSMSRNPGPSVYKALLSACQVHGNREIAV---RSAKRV 258
           EA      M       V+ ++++A   H + + A+   +S +RV
Sbjct: 436 EALKVFREMMTGDS-VVWNSIIAAFAQHSDGDEALHLYKSMRRV 478


>gi|449448934|ref|XP_004142220.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37320-like [Cucumis sativus]
 gi|449502632|ref|XP_004161699.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37320-like [Cucumis sativus]
          Length = 524

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/302 (38%), Positives = 179/302 (59%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    +   V+  +  RN +SW AIIAGF         L+ F EM++  +  + FT 
Sbjct: 175 YGKCGELSNAYRVFDEMPVRNVVSWTAIIAGFAVEWQVNMCLELFQEMKRMALQPNEFTF 234

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +I+ A         G+ +H    K+G+ S + V N L+ MY  CGA+N A  +F +M+ 
Sbjct: 235 VTILTACTGSGALGVGRSLHCQTVKMGFHSYLHVANALISMYCKCGALNFALYIFEAMEV 294

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQK-TEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +D VSWNS++ G A HG S  A+ LF+ M+K  +++ D  TFL VLS+C HAGF+++G  
Sbjct: 295 KDTVSWNSMIAGYAQHGLSLRAIDLFKAMRKQKQVEADAITFLGVLSSCRHAGFVEEGRH 354

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF LM  +  L+ P  +HY+ ++ LLGRAG L EA++FI  M   P   V+ +LLSAC++
Sbjct: 355 YFNLMV-ELGLK-PELDHYSCVIDLLGRAGLLKEAQNFIEKMPITPNSIVWGSLLSACRL 412

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN  I +++A+  L L P+  + ++ L+N+       DDA  +R +M ++G++  PGYS
Sbjct: 413 HGNVWIGLKAAESRLLLQPDCASTHLQLTNLYAKAGYLDDAARLRKIMKDKGLKTAPGYS 472

Query: 305 WV 306
           W+
Sbjct: 473 WI 474



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 70/118 (59%)

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I+S++         + G Q H++  + G+ +NV+V + LV +Y  CG +++A +VF  M 
Sbjct: 133 ISSVLSLCNSQRNLRGGIQYHSVAIRTGFIANVYVGSSLVSLYGKCGELSNAYRVFDEMP 192

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            R++VSW +++ G A        ++LF++M++  ++P+  TF+ +L+AC  +G +  G
Sbjct: 193 VRNVVSWTAIIAGFAVEWQVNMCLELFQEMKRMALQPNEFTFVTILTACTGSGALGVG 250



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 91/200 (45%), Gaps = 7/200 (3%)

Query: 3   ILTYSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDI 60
           I  Y +C  +L+F   ++ ++  ++ +SWN++IAG+   G   +A+  F  MR Q  ++ 
Sbjct: 273 ISMYCKC-GALNFALYIFEAMEVKDTVSWNSMIAGYAQHGLSLRAIDLFKAMRKQKQVEA 331

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D  T   ++ +       +EG+    L+ ++G    +   + ++ +    G + +A    
Sbjct: 332 DAITFLGVLSSCRHAGFVEEGRHYFNLMVELGLKPELDHYSCVIDLLGRAGLLKEAQNFI 391

Query: 121 SSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD-GTTFLVVLSACCHAGF 178
             M    + + W SLL  C  HG     ++  E   +  ++PD  +T L + +    AG+
Sbjct: 392 EKMPITPNSIVWGSLLSACRLHGNVWIGLKAAE--SRLLLQPDCASTHLQLTNLYAKAGY 449

Query: 179 IDKGLQYFYLMRNDASLEPP 198
           +D   +   +M++      P
Sbjct: 450 LDDAARLRKIMKDKGLKTAP 469


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 181/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFT 64
           Y++C S  + + V+S +R ++ ISWN +I G+       +AL  F+ +  +     D  T
Sbjct: 442 YAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERT 501

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +  ++ A   +S F +G+++H  I + GY S+  V N LV MYA CGA+  A  +F  + 
Sbjct: 502 VACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDIT 561

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +DLVSW  ++ G   HG+ +EA+ LF QM++  I+PD  +F+ +L AC H+G +D+G +
Sbjct: 562 SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWR 621

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +F +MR++  +EP   EHY  IV +L R G L++A  FI +M   P  +++ ALL  C++
Sbjct: 622 FFNIMRHECKIEPT-VEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRI 680

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H + ++A R A++V +L P +   YVL++N+    + W++   +R  +  RG+RK PG S
Sbjct: 681 HHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCS 740

Query: 305 WV 306
           W+
Sbjct: 741 WI 742



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 129/274 (47%), Gaps = 33/274 (12%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + V+  +  R+ +S+ ++IAG+   G   +A+K F EM + GI  D +T+
Sbjct: 341 YSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++          EGK++H  I +     ++FV N L+ MYA CG++ +A  VFS M  
Sbjct: 401 TAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRV 460

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +D++SWN+++ G + + Y+ EA+ LF  +  +    PD  T   VL AC      DKG +
Sbjct: 461 KDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGRE 520

Query: 185 -YFYLMRN----DASLEPPRAEHY------------------------TAIVGLLGRAGF 215
            + Y+MRN    D  +     + Y                        T ++   G  GF
Sbjct: 521 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGF 580

Query: 216 LNEAESFINSMSR---NPGPSVYKALLSACQVHG 246
             EA +  N M +    P    + +LL AC   G
Sbjct: 581 GKEAIALFNQMRQAGIEPDEISFVSLLYACSHSG 614



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 113/224 (50%), Gaps = 7/224 (3%)

Query: 4   LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           L   R DS+   + V+  +  R+ ISWN+II G+ + G  E+ L  F +M  +GI+ID  
Sbjct: 241 LKNHRVDSA---RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLA 297

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           TI S+            G+ +H    K  +       N L+ MY+ CG ++ A  VF  M
Sbjct: 298 TIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREM 357

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             R +VS+ S++ G A  G + EAV+LFE+M++  I PD  T   VL+ C     +D+G 
Sbjct: 358 SGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGK 417

Query: 184 Q-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           + + ++  ND   +   +    A++ +  + G + EAE   + M
Sbjct: 418 RVHEWIKENDMGFDIFVS---NALMDMYAKCGSMREAELVFSEM 458



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 86/179 (48%)

Query: 4   LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           L Y+ C    +   V+  V+    + WN ++      G    ++  F +M  +G+++D +
Sbjct: 137 LMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSY 196

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T + +  +   +     G+Q+H  I K G+     V N LV  Y     ++ A KVF  M
Sbjct: 197 TFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEM 256

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            ERD++SWNS++ G   +G + + + +F QM  + I+ D  T + V + C  +  I  G
Sbjct: 257 TERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLG 315



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 2/145 (1%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R+    N  +  FC  G+ + A+K          DID  T+ S++         K+GK++
Sbjct: 59  RSVTDANTQLRRFCESGNLKNAVKLLHV--SGKWDIDPRTLCSVLQLCADSKSLKDGKEV 116

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
              I   G+  +  + ++L  MY  CG + +A++VF  +     + WN L+   A  G  
Sbjct: 117 DNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDF 176

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVV 169
             ++ LF++M  + ++ D  TF  V
Sbjct: 177 SGSIGLFKKMMSSGVEMDSYTFSCV 201


>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 122/310 (39%), Positives = 174/310 (56%), Gaps = 10/310 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC      + ++  +  RN +SW  +IAG   +G  +QAL  F EMR+AG+ +D   +
Sbjct: 195 YVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVAL 254

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSN----VFVQNRLVFMYAICGAINDANKVFS 121
            + + A   +   K G  +H+ I +  +  N    V + N L+ MYA CG I+ A KVF 
Sbjct: 255 VAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFI 314

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT---EIKPDGTTFLVVLSACCHAGF 178
            M +R  +SW S++ G A  G++ EA+ +F+ MQ+    E +PDG TF+ VL AC HAGF
Sbjct: 315 GMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGF 374

Query: 179 IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
           +D+G  +F  M     +  PR EHY  +V LL RAGFL+EA   I SM   P  +V+ AL
Sbjct: 375 VDQGRHFFECMNKKWGI-VPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGAL 433

Query: 239 LSACQVHGNREIAVRSAKRV-LDLWPNDPAIY-VLLSNVSKATDCWDDAGDIRTLMYNRG 296
           L  C++H N E+A   A+++ L+L P+  A Y VLLSNV      W D   +R  M   G
Sbjct: 434 LGGCRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIG 493

Query: 297 IRKKPGYSWV 306
           +RK  G SWV
Sbjct: 494 VRKPAGRSWV 503



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 114/254 (44%), Gaps = 37/254 (14%)

Query: 13  LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           L+   V+  +   +   WN +I G     +  + ++ ++ M +A  + + FT + ++G  
Sbjct: 67  LNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGC 126

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI----------------------- 109
                 +EG+Q+H  +   GY +NVFV+  LV +YAI                       
Sbjct: 127 ARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIV 186

Query: 110 -----------CGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
                      CG ++ A ++F  M ER++VSW +++ GCA  G  ++A+ LF +M++  
Sbjct: 187 SWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAG 246

Query: 159 IKPDGTTFLVVLSACCHAGFIDKG--LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFL 216
           +K D    +  LSAC   G +  G  +  +   R  A  +P       +++ +    G +
Sbjct: 247 VKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVI 306

Query: 217 NEA-ESFINSMSRN 229
           ++A + FI    R+
Sbjct: 307 DKAYKVFIGMQQRS 320



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 53/107 (49%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K+ KQ+H  I   G+    F+  +L+  Y   G + +A+KVF  ++      WN ++ G
Sbjct: 31  IKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRG 90

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +      + V+L+ +M + E +P+  T+  ++  C  +  + +G Q
Sbjct: 91  HSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQ 137


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 181/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  + + D   D Q  + S+  +N +S+N  + G C   + EQA K  SE+ +  + +  
Sbjct: 415 ISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSA 474

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++  +  +   ++G+Q+H+ + K+G   N  V N L+ MY+ CG+I+ A++VF+ 
Sbjct: 475 FTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNF 534

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+ R+++SW S++ G A HG++   ++ F QM +  +KP+  T++ +LSAC H G + +G
Sbjct: 535 MENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEG 594

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            ++F  M  D  ++ P+ EHY  +V LL RAG L +A  FIN+M       V++  L AC
Sbjct: 595 WRHFNSMYEDHKIK-PKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGAC 653

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH N E+   +A+++L+L PN+PA Y+ LSN+      W+++ ++R  M  R + K+ G
Sbjct: 654 RVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGG 713

Query: 303 YSWV 306
            SW+
Sbjct: 714 CSWI 717



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 139/281 (49%), Gaps = 16/281 (5%)

Query: 6   YSRC--DSSLD-FQNVYSSVRTRNQISWNAIIAGF---CNLGSGEQALKCFSEM-RQAGI 58
           Y++C  D S+D  + V+  +   + +SW A+I G+   CNL +  +A+  FSEM  Q  +
Sbjct: 312 YAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLAT--EAINLFSEMITQGHV 369

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           + ++FT +S   A G +S  + GKQ+    FK G  SN  V N ++ M+     + DA +
Sbjct: 370 EPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQR 429

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
            F S+ E++LVS+N+ L G   +    +A +L  ++ + E+     TF  +LS   + G 
Sbjct: 430 AFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGS 489

Query: 179 IDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
           I KG Q +  +++   S   P      A++ +  + G ++ A    N M  N     + +
Sbjct: 490 IRKGEQIHSQVVKLGLSCNQPVC---NALISMYSKCGSIDTASRVFNFM-ENRNVISWTS 545

Query: 238 LLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVS 276
           +++    HG     + +  ++++  + PN+     +LS  S
Sbjct: 546 MITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACS 586



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 15  FQN---VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA 71
           F+N   V+  +   N ++W  +I     +G   +A++ F +M  +G + D FT++S+  A
Sbjct: 219 FENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSA 278

Query: 72  IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC---GAINDANKVFSSMDERDL 128
              +     GKQ+H+   + G   +  V+  LV MYA C   G+++D  KVF  M++  +
Sbjct: 279 CAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSV 336

Query: 129 VSWNSLLLGCAHH-GYSREAVQLFEQM-QKTEIKPDGTTFLVVLSAC 173
           +SW +L+ G   +   + EA+ LF +M  +  ++P+  TF     AC
Sbjct: 337 MSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 5/187 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID 59
           I  YS+   S   ++V+ ++R    R+ +SW+A++A + N G    A+K F E  + G+ 
Sbjct: 104 ISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLV 163

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAIC-GAINDAN 117
            + +  T+++ A         G+     + K G ++S+V V   L+ M+     +  +A 
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           KVF  M E ++V+W  ++  C   G+ REA++ F  M  +  + D  T   V SAC    
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELE 283

Query: 178 FIDKGLQ 184
            +  G Q
Sbjct: 284 NLSLGKQ 290


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 174/302 (57%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C        V+  +  ++ ++WN++I GF   G  E+AL  ++EM   GI  D FTI
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTI 225

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   I     GK++H  + K+G   N+   N L+ +YA CG + +A  +F  M +
Sbjct: 226 VSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD 285

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++ VSW SL++G A +G+ +EA++LF+ M+ TE + P   TF+ +L AC H G + +G +
Sbjct: 286 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE 345

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF  MR +  +E PR EH+  +V LL RAG + +A  +I SM   P   +++ LL AC V
Sbjct: 346 YFRRMREEYKIE-PRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTV 404

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HG+ ++A  +  ++L L PN    YVLLSN+  +   W D   IR  M   G++K PG+S
Sbjct: 405 HGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHS 464

Query: 305 WV 306
            V
Sbjct: 465 LV 466



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 121/215 (56%), Gaps = 8/215 (3%)

Query: 16  QNVYSSV-RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIVGAIG 73
             V+S + +  N   WN +I G+  +G+   A   + EMR +G ++ D  T   ++ A+ 
Sbjct: 73  HKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVT 132

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            ++  + G+ +H+++ + G+ S ++VQN L+ +YA CG +  A KVF  M E+DLV+WNS
Sbjct: 133 TMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNS 192

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
           ++ G A +G   EA+ L+ +M    IKPDG T + +LSAC   G +  G + + Y+++  
Sbjct: 193 VINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVG 252

Query: 193 ASLEPPRAEHYT-AIVGLLGRAGFLNEAESFINSM 226
            +    R  H +  ++ L  R G + EA++  + M
Sbjct: 253 LT----RNLHSSNVLLDLYARCGRVEEAKTLFDEM 283


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 180/305 (59%), Gaps = 8/305 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +    +NV+ ++   N +SWN +I+G+  +GS  +AL  F++MR+AG+  D  T 
Sbjct: 545 YFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITF 604

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A   ++  ++GK++H  I +   + N  V   L+ MYA CGA+++A  +F+ + E
Sbjct: 605 TSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPE 664

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSW S++     HG + EA++LFE+MQ+++ KPD  TFL +LSAC HAG +D+G  Y
Sbjct: 665 RDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYY 724

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNP----GPSVYKALLSA 241
           F  M  +   +P   EHY+ ++ LLGR G L EA   +    R P       +   L SA
Sbjct: 725 FNQMIAEYGFKPA-VEHYSCLIDLLGRVGRLREAYEILQ---RTPDIREDVGLLSTLFSA 780

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C +H   ++  +  + +++  P+DP+ Y++LSN+  +   WD+   +R  +   G++K P
Sbjct: 781 CHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNP 840

Query: 302 GYSWV 306
           G SW+
Sbjct: 841 GCSWI 845



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 122/227 (53%), Gaps = 8/227 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+   D   ++  +  R+  SWN +I+ +   G  E+AL+ F EM+ +G   D  T+
Sbjct: 343 YAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTL 402

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++ +   +   + GK++H  + + G+  + FV + LV MY  CG +  A +VF  +  
Sbjct: 403 TTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQR 462

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           +++VSWNS++ G +  G S+  ++LF +M +  I+P  TT   +L AC  +  +  G   
Sbjct: 463 KNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFI 522

Query: 185 YFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRN 229
           + Y++RN        A+ +  ++++ L  + G +  AE+   +M + 
Sbjct: 523 HGYIIRNRV-----EADIFVNSSLIDLYFKCGNIGSAENVFQNMPKT 564



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 136/275 (49%), Gaps = 5/275 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + V+  ++ +N +SWN++IAG+   G  +  ++ F  M + GI     T+
Sbjct: 444 YGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTL 503

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+ A       + GK +H  I +   ++++FV + L+ +Y  CG I  A  VF +M +
Sbjct: 504 SSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPK 563

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            ++VSWN ++ G    G   EA+ +F  M+K  +KPD  TF  VL AC     ++KG + 
Sbjct: 564 TNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEI 623

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              +  ++ LE        A++ +  + G ++EA    N +      S + ++++A   H
Sbjct: 624 HNFII-ESKLEINEVV-MGALLDMYAKCGAVDEALHIFNQLPERDFVS-WTSMIAAYGSH 680

Query: 246 GNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
           G    A++  +++   D  P+      +LS  S A
Sbjct: 681 GQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHA 715



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 106/215 (49%), Gaps = 6/215 (2%)

Query: 18  VYSSVRTRNQIS-WNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDIDYFTITSIVGAIGVI 75
           V+ ++     I+ WN ++A         + L+ F  +     +  D FT  S++ A   +
Sbjct: 252 VFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGL 311

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                GK +H  + K G+  +V V +  V MYA C    DA K+F  M ERD+ SWN+++
Sbjct: 312 GRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVI 371

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
                 G   +A++LFE+M+ +  KPD  T   V+S+C     +++G + +  L+R+  +
Sbjct: 372 SCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFA 431

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
           L+   +   +A+V + G+ G L  A+     + R 
Sbjct: 432 LDGFVS---SALVDMYGKCGCLEMAKEVFEQIQRK 463


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 174/302 (57%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C        V+  +  ++ ++WN++I GF   G  E+AL  ++EM   GI  D FTI
Sbjct: 33  YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTI 92

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   I     GK++H  + K+G   N+   N L+ +YA CG + +A  +F  M +
Sbjct: 93  VSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD 152

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++ VSW SL++G A +G+ +EA++LF+ M+ TE + P   TF+ +L AC H G + +G +
Sbjct: 153 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE 212

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF  MR +  +E PR EH+  +V LL RAG + +A  +I SM   P   +++ LL AC V
Sbjct: 213 YFRRMREEYKIE-PRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTV 271

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HG+ ++A  +  ++L L PN    YVLLSN+  +   W D   IR  M   G++K PG+S
Sbjct: 272 HGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHS 331

Query: 305 WV 306
            V
Sbjct: 332 LV 333



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 88/148 (59%), Gaps = 6/148 (4%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G+ +H+++ + G+ S ++VQN L+ +YA CG +  A KVF  M E+DLV+WNS++ G A 
Sbjct: 7   GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 66

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPR 199
           +G   EA+ L+ +M    IKPDG T + +LSAC   G +  G + + Y+++   +    R
Sbjct: 67  NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLT----R 122

Query: 200 AEHYT-AIVGLLGRAGFLNEAESFINSM 226
             H +  ++ L  R G + EA++  + M
Sbjct: 123 NLHSSNVLLDLYARCGRVEEAKTLFDEM 150


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 180/301 (59%), Gaps = 4/301 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      ++++  +  ++ ISWN +I G+ ++ S ++AL  F +M+Q+ ++ +  T 
Sbjct: 309 YSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK--IGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            SI+ A   +     GK +HA I K  +G  +N  +   L+ MYA CG I  A +VF+ M
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGL-TNTSLWTSLIDMYAKCGNIEAAKQVFAGM 427

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             + L SWN+++ G A HG++  A++LF QM+    +PD  TF+ VLSAC HAG ++ G 
Sbjct: 428 KPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGR 487

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           Q F  M  D  + P + +HY  ++ LLGRAG  +EAE+ + +M   P  +++ +LL AC+
Sbjct: 488 QCFSSMVEDYDISP-KLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACR 546

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
           VHGN E+   +AK + +L P +P  YVLLSN+      WDD   IRT + ++G++K PG 
Sbjct: 547 VHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGC 606

Query: 304 S 304
           S
Sbjct: 607 S 607



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 142/267 (53%), Gaps = 4/267 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +  R+ +SWNA+IAG+   G  E+AL  F EM++A +  +  T+ +++ A  
Sbjct: 216 DARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACA 275

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
                + G  + + I   G  SN+ + N L+ MY+ CG ++ A  +F  + E+D++SWN 
Sbjct: 276 QSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNV 335

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G +H    +EA+ LF +MQ++ ++P+  TF+ +L AC + G +D G ++ +   +  
Sbjct: 336 MIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG-KWIHAYIDKK 394

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            L       +T+++ +  + G +  A+     M      S + A++S   +HG+  +A+ 
Sbjct: 395 FLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS-WNAMISGLAMHGHANMALE 453

Query: 254 SAKRVLD--LWPNDPAIYVLLSNVSKA 278
             +++ D    P+D     +LS  S A
Sbjct: 454 LFRQMRDEGFEPDDITFVGVLSACSHA 480



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 31/196 (15%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ S+   NQ  WN +I G     S   A+  +  M   G++ + +T   ++ +   +  
Sbjct: 88  LFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGA 147

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYA----------------------------- 108
            +EGKQ+H  + K+G +S+ FV   L+ MYA                             
Sbjct: 148 TQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITG 207

Query: 109 --ICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
             + G ++DA ++F  +  RD VSWN+++ G A  G   EA+  F++M++  + P+ +T 
Sbjct: 208 YTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTM 267

Query: 167 LVVLSACCHAGFIDKG 182
           + VLSAC  +G ++ G
Sbjct: 268 VTVLSACAQSGSLELG 283



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 92/194 (47%), Gaps = 11/194 (5%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC--GAINDANKVFSSMDERDLVSWNSLL 135
           F+  KQ+H+ I K G  +  F  ++L+   AI   G ++ A  +F S+++ +   WN+++
Sbjct: 45  FQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMI 104

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G +       A+  + +M    ++P+  TF  +L +C   G   +G Q + ++++    
Sbjct: 105 RGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLE 164

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
            +P     +T+++ +  + G L  AE   +  S     S + AL++   + G     +  
Sbjct: 165 SDPFV---HTSLINMYAQNGELGYAELVFSKSSLRDAVS-FTALITGYTLRG----CLDD 216

Query: 255 AKRVLDLWPNDPAI 268
           A+R+ +  P   A+
Sbjct: 217 ARRLFEEIPVRDAV 230


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 111/290 (38%), Positives = 172/290 (59%), Gaps = 1/290 (0%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
            + V+  +R    ISWNA++A + N     +A++ F  M++ GI+ D  T+ +++ + G 
Sbjct: 80  LKGVFDEMRFTGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGE 139

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +S    GK++H +I +    S++ ++N L+ MYA CG + +A  VF SM  RD+VSW S+
Sbjct: 140 VSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSI 199

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           +     HG+ REA+ LFE+M    ++PD   F+ +L+AC HAG +D G  YFY M ++  
Sbjct: 200 ISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFH 259

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           +  P+ EHY  +V LLGRAG + EA  FI  M   P   V+ ALL AC++H N +I + +
Sbjct: 260 I-APKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLA 318

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           A  +L L P     YVLLSN+      W D   +R++M ++GI+K PG S
Sbjct: 319 ADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVS 368



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 116/276 (42%), Gaps = 39/276 (14%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-DIDYFT 64
           Y+RC    D   ++  ++ R+ +SWNA+I+GF + G   +A+  F E+        D  T
Sbjct: 2   YARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGT 61

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + SI+ ++G            A +  I     VF + R                      
Sbjct: 62  MASILPSMG-----------KARVEDIALLKGVFDEMRFT-------------------- 90

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
              L+SWN++L    ++    EAV+LF +MQK  I+PD  T   VL +C     +  G +
Sbjct: 91  --GLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKR 148

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
              +++          E   A++ +    G L EA    +SM      S + +++SA   
Sbjct: 149 IHEVIKRRRMCSSMLLE--NALMDMYANCGCLKEARDVFDSMGTRDVVS-WTSIISAYGR 205

Query: 245 HGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
           HG+   A+   +++    L P+  A   +L+  S A
Sbjct: 206 HGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHA 241



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI-KPDGT 164
           MYA CG  +DA ++F  M  RD+VSWN+++ G AH G    A+ +F ++   +  KPD  
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60

Query: 165 TFLVVLSACCHAGFIDKGL 183
           T   +L +   A   D  L
Sbjct: 61  TMASILPSMGKARVEDIAL 79



 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 42/212 (19%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C    + ++V+ S+ TR+ +SW +II+ +   G G +A+  F +M   G++ D    
Sbjct: 172 YANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAF 231

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV--FSSM 123
            +I+ A             HA +  +G            + Y++    + A K+  ++ M
Sbjct: 232 VAILAACS-----------HAGLLDMGKH----------YFYSMTSEFHIAPKLEHYACM 270

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            +         LLG A  G  REA      M    IKP+   +  +L AC     +D GL
Sbjct: 271 VD---------LLGRA--GCIREAYDFIMVMP---IKPNERVWGALLGACRIHSNMDIGL 316

Query: 184 QYF-YLMRNDASLEPPRAEHYTAIVGLLGRAG 214
                L+R    L P +  +Y  +  +  RAG
Sbjct: 317 LAADSLLR----LAPKQTGYYVLLSNIYARAG 344


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 179/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C S    + +++    T+++++WN IIA +   G  ++A+  F +MR      +  T
Sbjct: 576 YAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVT 635

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++ A   ++ F+EG   HA I ++G+ SN  V N L+ MYA CG +  + K+F+ MD
Sbjct: 636 FVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMD 695

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +D VSWN++L G A HG+   A+ LF  MQ+++++ D  +F+ VLSAC H G +++G +
Sbjct: 696 HKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRK 755

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F+ M +   ++P   EHY  +V LLGRAG  +E   FI  M   P   V+ ALL +C++
Sbjct: 756 IFHSMSDKYHIKPD-LEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRM 814

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N ++   +   ++ L P +PA +V+LS++   +  W DAG  R+ M + G++K PG S
Sbjct: 815 HSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCS 874

Query: 305 WV 306
           WV
Sbjct: 875 WV 876



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 129/269 (47%), Gaps = 14/269 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ Y++C  +   + ++  ++ R+ ++W+AIIA     G  E+AL  F EM+   +  + 
Sbjct: 371 MVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNR 430

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ SI+ A   +S  K GK +H    K   DS++     LV MYA CG    A   F+ 
Sbjct: 431 VTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNR 490

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD+V+WNSL+ G A  G    A+ +F +++ + I PD  T + V+ AC     +D+G
Sbjct: 491 MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG 550

Query: 183 LQYFYLM-----RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
                L+      +D  ++        A++ +  + G L  AE   N          +  
Sbjct: 551 TCIHGLIVKLGFESDCHVK-------NALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNV 603

Query: 238 LLSACQVHGNREIAVRS--AKRVLDLWPN 264
           +++A   +G+ + A+ S    R+ +  PN
Sbjct: 604 IIAAYMQNGHAKEAISSFHQMRLENFHPN 632



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + V+  +  ++ +SW  ++AG+ + G   + L+ F +M+   + I+  + 
Sbjct: 273 YSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSA 332

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S   A       ++GK++H    +   DS++ V   L+ MYA CG    A ++F  +  
Sbjct: 333 VSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQG 392

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RDLV+W++++      GY  EA+ LF++MQ  ++KP+  T + +L AC     +  G   
Sbjct: 393 RDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI 452

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
           + + ++ D   +       TA+V +  + GF   A +  N MS
Sbjct: 453 HCFTVKADMDSDLSTG---TALVSMYAKCGFFTAALTTFNRMS 492



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 3/175 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           + +CD +   ++V+ S    ++I WN++I  +       +AL+ +  M + G++ D +T 
Sbjct: 76  FHKCDLA---RSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTF 132

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T ++ A       +EG   H  I + G + +VF+   LV MY+  G +  A +VF  M +
Sbjct: 133 TFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPK 192

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           RD+V+WN+++ G +      EAV  F  MQ   ++P   + L +    C    I+
Sbjct: 193 RDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIE 247



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 92/177 (51%), Gaps = 2/177 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+       + V+  +  R+ ++WNA+IAG        +A+  F  M+  G++    ++
Sbjct: 174 YSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSL 233

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            ++   I  +S  +  + +H  +F+  + S V   N L+ +Y+ CG ++ A +VF  M +
Sbjct: 234 LNLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLIDLYSKCGDVDVARRVFDQMVD 291

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +D VSW +++ G AH+G   E ++LF++M+   ++ +  + +    A      ++KG
Sbjct: 292 QDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           Q+HA I   G+  +  + + L+ +Y++    + A  VF S      + WNS++       
Sbjct: 50  QIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSK 108

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
              EA++++  M +  ++PD  TF  VL AC  A  + +G+ +
Sbjct: 109 QYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWF 151


>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
          Length = 467

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 122/310 (39%), Positives = 174/310 (56%), Gaps = 10/310 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC      + ++  +  RN +SW  +IAG   +G  +QAL  F EMR+AG+ +D   +
Sbjct: 109 YVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVAL 168

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSN----VFVQNRLVFMYAICGAINDANKVFS 121
            + + A   +   K G  +H+ I +  +  N    V + N L+ MYA CG I+ A KVF 
Sbjct: 169 VAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFI 228

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK---TEIKPDGTTFLVVLSACCHAGF 178
            M +R  +SW S++ G A  G++ EA+ +F+ MQ+    E +PDG TF+ VL AC HAGF
Sbjct: 229 GMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGF 288

Query: 179 IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
           +D+G  +F  M     +  PR EHY  +V LL RAGFL+EA   I SM   P  +V+ AL
Sbjct: 289 VDQGRHFFECMNKKWGI-VPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGAL 347

Query: 239 LSACQVHGNREIAVRSAKRV-LDLWPNDPAIY-VLLSNVSKATDCWDDAGDIRTLMYNRG 296
           L  C++H N E+A   A+++ L+L P+  A Y VLLSNV      W D   +R  M   G
Sbjct: 348 LGGCRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIG 407

Query: 297 IRKKPGYSWV 306
           +RK  G SWV
Sbjct: 408 VRKPAGRSWV 417



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 37/234 (15%)

Query: 33  IIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIG 92
           +I G     +  + ++ ++ M +A  + + FT + ++G        +EG+Q+H  +   G
Sbjct: 1   MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANG 60

Query: 93  YDSNVFVQNRLVFMYAI----------------------------------CGAINDANK 118
           Y +NVFV+  LV +YAI                                  CG ++ A +
Sbjct: 61  YCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARR 120

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           +F  M ER++VSW +++ GCA  G  ++A+ LF +M++  +K D    +  LSAC   G 
Sbjct: 121 IFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGD 180

Query: 179 IDKG--LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRN 229
           +  G  +  +   R  A  +P       +++ +    G +++A + FI    R+
Sbjct: 181 LKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRS 234


>gi|326489701|dbj|BAK01831.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 484

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 111/291 (38%), Positives = 172/291 (59%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +   +++SW A+I G    G  ++A+ CF  M   G++ DY T+ + + A   +
Sbjct: 157 REVFDGMPEPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAAISACAEV 216

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G  +H L+ +   + N+ + N L+ MYA CG +  A +VF SM  R +VSWNS++
Sbjct: 217 GALGLGMWVHRLVTRERLEGNIRIANSLIDMYARCGQVEFARQVFDSMRNRTVVSWNSMI 276

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           +G A +G   +A++ FE M++   +PD  TF  VL+AC HAG  D+GL+Y+  MR +  +
Sbjct: 277 VGFAANGRCTDAIEHFEAMRRKGFRPDAVTFTGVLTACSHAGLTDEGLRYYKAMRAEHGI 336

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
              R EHY  +V LLGRAG L EA S + +M   P   V  ALL+ C++HG+ ++A +  
Sbjct: 337 T-ARMEHYGCVVDLLGRAGRLGEAMSVVATMPMRPNEVVLGALLAGCRMHGDVDMAEQLM 395

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +L+  P   + YVLLSN+  AT  WD AG +R LM  RG++K+PG S V
Sbjct: 396 QHLLEQDPGGDSNYVLLSNIYAATGKWDGAGKVRGLMKARGVKKRPGRSAV 446



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC      + V+ S+R R  +SWN++I GF   G    A++ F  MR+ G   D  T 
Sbjct: 248 YARCGQVEFARQVFDSMRNRTVVSWNSMIVGFAANGRCTDAIEHFEAMRRKGFRPDAVTF 307

Query: 66  TSIVGAIGVISGFKEGKQMH-ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           T ++ A        EG + + A+  + G  + +     +V +    G + +A  V ++M 
Sbjct: 308 TGVLTACSHAGLTDEGLRYYKAMRAEHGITARMEHYGCVVDLLGRAGRLGEAMSVVATMP 367

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            R + V   +LL GC  HG    A QL + +   E  P G +  V+LS
Sbjct: 368 MRPNEVVLGALLAGCRMHGDVDMAEQLMQHL--LEQDPGGDSNYVLLS 413



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G +  A +VF  M E D VSW +L+ GC  +G   EA+  F  M    ++PD  T +  +
Sbjct: 151 GLVAAAREVFDGMPEPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAAI 210

Query: 171 SACCHAGFIDKGLQYFYLMRND 192
           SAC   G +  G+    L+  +
Sbjct: 211 SACAEVGALGLGMWVHRLVTRE 232


>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
          Length = 799

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    + Q ++  +  +  +SWNAI++GF      E A K FSEM   G+  D+FT 
Sbjct: 433 YCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTF 492

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++     ++  + GKQ+H  I K     + ++ + LV MYA CG + D+  VF  +++
Sbjct: 493 ATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEK 552

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSWN+++ G A HG   EA+++FE+MQK  + P+  TF+ VL AC H G  D G +Y
Sbjct: 553 RDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRY 612

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+LM     LE P+ EH+  +V +LGR+    EA  FINSM       ++K LLS C++ 
Sbjct: 613 FHLMTTHYKLE-PQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIR 671

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + EIA  +A  VL L P+D ++Y+LLSNV   +  W D    R L+    ++K+PG SW
Sbjct: 672 QDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSW 731

Query: 306 V 306
           +
Sbjct: 732 I 732



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 97/193 (50%), Gaps = 4/193 (2%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SWNA+++G+C  G  ++++  F EM + G+  D  T   ++ +   +     G Q+HAL
Sbjct: 115 VSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHAL 174

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
             K G + +V   + LV MY  C +++DA   F  M ER+ VSW S + GC  +      
Sbjct: 175 AVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRG 234

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAI 206
           ++LF +MQ+  +     ++     +C     ++ G Q + + ++N  S +       TAI
Sbjct: 235 LELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG---TAI 291

Query: 207 VGLLGRAGFLNEA 219
           V +  +A  L +A
Sbjct: 292 VDVYAKANSLTDA 304



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 39/179 (21%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C + ++   ++  ++ ++ +SWNAIIA     G  +  +  F+EM            
Sbjct: 371 YGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM------------ 418

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
                                    + +D+  FV + +V MY  CG I++A K+   +  
Sbjct: 419 -------------------------LRFDA--FVASTVVDMYCKCGIIDEAQKLHDRIGG 451

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           + +VSWN++L G + +  S  A + F +M    +KPD  TF  VL  C +   I+ G Q
Sbjct: 452 QQVVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ 510



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 2/126 (1%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
           N ++  Y+  G I+ A  +F  M + D+VSWN+L+ G    G  +E+V LF +M +  + 
Sbjct: 87  NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146

Query: 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220
           PD TTF V+L +C     +  G+Q   L          R    +A+V + G+   L++A 
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTG--SALVDMYGKCRSLDDAL 204

Query: 221 SFINSM 226
            F   M
Sbjct: 205 CFFYGM 210



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 34/245 (13%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D    +  +  RN +SW + IAG        + L+ F EM++ G+ +   + 
Sbjct: 194 YGKCRSLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSY 253

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S   +   +S    G+Q+HA   K  + S+  V   +V +YA   ++ DA + F  +  
Sbjct: 254 ASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPN 313

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
             + + N++++G            LF  M ++ I+ D  +   V SAC       KG  Y
Sbjct: 314 HTVETSNAMMVG------------LF--MIRSSIRFDVVSLSGVFSACAET----KG--Y 353

Query: 186 FYLMRNDASLEPPRAEHYTAI---VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           F          P +  H  AI   + L G+   L EA      M +    S + A+++A 
Sbjct: 354 F----------PGQQVHCLAIKSVLDLYGKCKALMEAYLIFQGMKQKDSVS-WNAIIAAL 402

Query: 243 QVHGN 247
           + +G+
Sbjct: 403 EQNGH 407



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 15/130 (11%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           M ++ I  D  +++ +  A     G+  G+Q+H L  K   D           +Y  C A
Sbjct: 328 MIRSSIRFDVVSLSGVFSACAETKGYFPGQQVHCLAIKSVLD-----------LYGKCKA 376

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           + +A  +F  M ++D VSWN+++     +G+  + +  F +M    ++ D      V+  
Sbjct: 377 LMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM----LRFDAFVASTVVDM 432

Query: 173 CCHAGFIDKG 182
            C  G ID+ 
Sbjct: 433 YCKCGIIDEA 442


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 181/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  + + D   D Q  + S+  +N +S+N  + G C   + EQA K  SE+ +  + +  
Sbjct: 415 ISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSA 474

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++  +  +   ++G+Q+H+ + K+G   N  V N L+ MY+ CG+I+ A++VF+ 
Sbjct: 475 FTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNF 534

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+ R+++SW S++ G A HG++   ++ F QM +  +KP+  T++ +LSAC H G + +G
Sbjct: 535 MENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEG 594

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            ++F  M  D  ++ P+ EHY  +V LL RAG L +A  FIN+M       V++  L AC
Sbjct: 595 WRHFNSMYEDHKIK-PKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGAC 653

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH N E+   +A+++L+L PN+PA Y+ LSN+      W+++ ++R  M  R + K+ G
Sbjct: 654 RVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGG 713

Query: 303 YSWV 306
            SW+
Sbjct: 714 CSWI 717



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 139/281 (49%), Gaps = 16/281 (5%)

Query: 6   YSRC--DSSLD-FQNVYSSVRTRNQISWNAIIAGF---CNLGSGEQALKCFSEM-RQAGI 58
           Y++C  D S+D  + V+  +   + +SW A+I G+   CNL +  +A+  FSEM  Q  +
Sbjct: 312 YAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLAT--EAINLFSEMITQGHV 369

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           + ++FT +S   A G +S  + GKQ+    FK G  SN  V N ++ M+     + DA +
Sbjct: 370 EPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQR 429

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
            F S+ E++LVS+N+ L G   +    +A +L  ++ + E+     TF  +LS   + G 
Sbjct: 430 AFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGS 489

Query: 179 IDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
           I KG Q +  +++   S   P      A++ +  + G ++ A    N M  N     + +
Sbjct: 490 IRKGEQIHSQVVKLGLSCNQPVC---NALISMYSKCGSIDTASRVFNFM-ENRNVISWTS 545

Query: 238 LLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVS 276
           +++    HG     + +  ++++  + PN+     +LS  S
Sbjct: 546 MITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACS 586



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 15  FQN---VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA 71
           F+N   V+  +   N ++W  +I     +G   +A++ F +M  +G + D FT++S+  A
Sbjct: 219 FENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSA 278

Query: 72  IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC---GAINDANKVFSSMDERDL 128
              +     GKQ+H+   + G   +  V+  LV MYA C   G+++D  KVF  M++  +
Sbjct: 279 CAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSV 336

Query: 129 VSWNSLLLGCAHH-GYSREAVQLFEQM-QKTEIKPDGTTFLVVLSAC 173
           +SW +L+ G   +   + EA+ LF +M  +  ++P+  TF     AC
Sbjct: 337 MSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 5/187 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID 59
           I  YS+   S   ++V+ ++R    R+ +SW+A++A + N G    A+K F E  + G+ 
Sbjct: 104 ISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLV 163

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAIC-GAINDAN 117
            + +  T+++ A         G+     + K G ++S+V V   L+ M+     +  +A 
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           KVF  M E ++V+W  ++  C   G+ REA++ F  M  +  + D  T   V SAC    
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELE 283

Query: 178 FIDKGLQ 184
            +  G Q
Sbjct: 284 NLSLGKQ 290


>gi|296082436|emb|CBI21441.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/298 (38%), Positives = 173/298 (58%), Gaps = 5/298 (1%)

Query: 9   CDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           C    D  NV+  +   + ++WNA+I GF +L  G  AL+CFS+M+++GI  +  TI+++
Sbjct: 540 CKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTV 599

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           + A  +    K GKQ+HA I K  + S + V N L+ MY+ CG I  A  +FS+M  RDL
Sbjct: 600 LPACDL----KSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDL 655

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL 188
           VSWN+++ G   HG  + A+QL   M  +++ P+  TF   LSAC H+G +D+G++ F+ 
Sbjct: 656 VSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALSACSHSGLVDEGMELFHT 715

Query: 189 MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
           M  D     P  EH++ +V LL RA  L +A  FI  M   P   ++ ALL+AC+   N 
Sbjct: 716 MTRDFGFT-PGMEHFSCVVDLLARADRLEDAVGFIEKMPLKPSKHIWSALLAACRAQQNV 774

Query: 249 EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +A  +A+++  L P     YV LSN+      WDDA  +R LM +RG+ K  GYSW+
Sbjct: 775 SVAKLAAEQLFQLEPEHAGNYVTLSNIYARAGRWDDAVAVRKLMEDRGLVKPSGYSWI 832



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 107/245 (43%), Gaps = 38/245 (15%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++  +   N  +W AI+  +   G  ++ ++ +SEM+  G+  D +    +  A G +
Sbjct: 417 QALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQL 476

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS-- 133
              + G Q+H  +   G + ++ V N L+ MY+  G +    +VF  M ERD++SWNS  
Sbjct: 477 LWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMI 536

Query: 134 ---------------------------LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
                                      ++LG         A++ F +MQ++ I  +  T 
Sbjct: 537 SGYCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITI 596

Query: 167 LVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES-FIN 224
             VL AC     +  G Q + Y+ +N  S   P    + A++ +  + G +  A S F N
Sbjct: 597 STVLPACD----LKSGKQVHAYITKNSFSSVIPV---WNALIHMYSKCGCIGTAYSIFSN 649

Query: 225 SMSRN 229
            +SR+
Sbjct: 650 MISRD 654



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 85/197 (43%), Gaps = 3/197 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C       +++S++ +R+ +SWN +I GF   G G+ AL+   +M  + +  + 
Sbjct: 631 IHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNS 690

Query: 63  FTITSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T TS + A        EG ++ H +    G+   +   + +V + A    + DA     
Sbjct: 691 VTFTSALSACSHSGLVDEGMELFHTMTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFIE 750

Query: 122 SMDERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            M  +     W++LL  C        A    EQ+ + E +  G  ++ + +    AG  D
Sbjct: 751 KMPLKPSKHIWSALLAACRAQQNVSVAKLAAEQLFQLEPEHAG-NYVTLSNIYARAGRWD 809

Query: 181 KGLQYFYLMRNDASLEP 197
             +    LM +   ++P
Sbjct: 810 DAVAVRKLMEDRGLVKP 826


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 173/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     D + V+S +  R+ ISWN+++AG+   G   +AL+ F +M  A +       
Sbjct: 287 YAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAF 346

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   ++    GKQ+H  + + G+ SN+F+ + LV MY+ CG I  A K+F  M+ 
Sbjct: 347 SSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNV 406

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VSW ++++G A HG+  EAV LFE+M++  +KP+   F+ VL+AC H G +D+   Y
Sbjct: 407 LDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGY 466

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M     L     EHY A+  LLGRAG L EA +FI+ M   P  SV+  LLS+C VH
Sbjct: 467 FNSMTKVYGLN-QELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVH 525

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+A + A+++  +   +   YVL+ N+  +   W +   +R  M  +G+RKKP  SW
Sbjct: 526 KNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSW 585

Query: 306 V 306
           +
Sbjct: 586 I 586



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 133/272 (48%), Gaps = 8/272 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  ++ +S+N IIAG+   G  E AL+   EM    +  D FT++S++      
Sbjct: 196 RRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEY 255

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               +GK++H  + + G DS+V++ + LV MYA    I D+ +VFS +  RD +SWNSL+
Sbjct: 256 VDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLV 315

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G   +G   EA++LF QM   ++KP    F  V+ AC H   +  G Q + Y++R    
Sbjct: 316 AGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG 375

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS-ACQVHGNREIAVR 253
                A   +A+V +  + G +  A    + M+     S    ++  A   HG+  +++ 
Sbjct: 376 SNIFIA---SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLF 432

Query: 254 SAKRVLDLWPNDPAIYVLL---SNVSKATDCW 282
              +   + PN  A   +L   S+V    + W
Sbjct: 433 EEMKRQGVKPNQVAFVAVLTACSHVGLVDEAW 464



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 86/188 (45%), Gaps = 36/188 (19%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           + ++++   ++W ++I  F +     +AL  F EMR +G   D+    S++ +  ++   
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYA-ICG-------------------------- 111
           + G+ +H  I ++G D +++  N L+ MYA + G                          
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181

Query: 112 ---------AINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
                     I+   +VF  M  +D+VS+N+++ G A  G   +A+++  +M  T++KPD
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241

Query: 163 GTTFLVVL 170
             T   VL
Sbjct: 242 SFTLSSVL 249


>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 188/305 (61%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y++C    + +N++  + TR  +SWN++I+G+   G   +AL+ F++M+  G ++  
Sbjct: 204 IMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSE 263

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ A   +   + GK +H  I +  ++ NV V   ++ MY  CG++ +A +VF +
Sbjct: 264 FTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFET 323

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDK 181
              R L  WNS+++G A +G+ REA + F +++ ++ +KPD  +F+ VL+AC H G I+K
Sbjct: 324 CPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINK 383

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
              YF LM N   +E P  +HYT IV +LG+AG L EAE  I  M   P   ++ +LLS+
Sbjct: 384 ARDYFELMMNKYEIE-PSIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWGSLLSS 442

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+ H N +IA R+A+RV +L P+D + YVL+SNV  A++ +++A + R LM      K+P
Sbjct: 443 CRKHRNVQIARRAAQRVYELNPSDASGYVLMSNVHAASNKFEEAIEQRLLMKENLTEKEP 502

Query: 302 GYSWV 306
           G S +
Sbjct: 503 GCSSI 507



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 124/308 (40%), Gaps = 42/308 (13%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N  SWN II  F    + + A+  F +M  + I   Y T  S+  A   +     G Q+H
Sbjct: 91  NLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLH 150

Query: 86  ALIFKIGYDSNVFVQNRLVFMYA-----------------------------------IC 110
             + K+G  ++ F+ N +++MYA                                    C
Sbjct: 151 GRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKC 210

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G I+++  +F  M  R  VSWNS++ G   +G   EA++LF +MQ    +    T + +L
Sbjct: 211 GEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLL 270

Query: 171 SACCHAGFIDKG-LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
           +AC H G +  G   + Y+ RN   L        TAI+ +  + G +  A     +  R 
Sbjct: 271 NACAHLGALQHGKWVHDYIKRNHFELNVIVV---TAIIDMYCKCGSVENAVEVFETCPRR 327

Query: 230 PGPSVYKALLSACQVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGD 287
            G S + +++    ++G+   A    S      L   D   ++ +    K     + A D
Sbjct: 328 -GLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARD 386

Query: 288 IRTLMYNR 295
              LM N+
Sbjct: 387 YFELMMNK 394



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 1/103 (0%)

Query: 83  QMHALIFKIGYDSNVFVQNR-LVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           Q++  I K G   N     R L F  +  G IN A K+F  M   +L SWN+++   +  
Sbjct: 46  QIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMPNPNLYSWNTIIRAFSRS 105

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
              + A+ LF  M  ++I+P   T+  V  A    G    G Q
Sbjct: 106 STPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQ 148


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 186/302 (61%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    + + +++++  R+ + W A+I+ +   G  E+ L+ F++MRQA +  D  T 
Sbjct: 356 YAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATF 415

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   I+    GKQ+H+ I K G+ SNVF  + L+ +YA CG+I DA + F  M +
Sbjct: 416 ASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPD 475

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++VSWN+++   A +G +   ++ F++M  + ++PD  +FL VLSAC H+G +++GL +
Sbjct: 476 RNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWH 535

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M     L+ PR EHY ++V +L R+G  NEAE  +  M  +P   ++ ++L+AC++H
Sbjct: 536 FNSMTQIYKLD-PRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIH 594

Query: 246 GNREIAVRSAKRVLDLWP-NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
            N+E+A R+A ++ ++    D A YV +SN+  A   W++   +   M +RG++K P YS
Sbjct: 595 KNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYS 654

Query: 305 WV 306
           WV
Sbjct: 655 WV 656



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 130/277 (46%), Gaps = 9/277 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+ DS +D + ++  +  ++ +S+N II+G+   G  + A   F E++    D   F  
Sbjct: 255 YSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPF 314

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++        ++ G+Q+HA       DS + V N LV MYA CG   +A  +F+++  
Sbjct: 315 ATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTH 374

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R  V W +++      G+  E +QLF +M++  +  D  TF  +L A      +  G Q 
Sbjct: 375 RSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQL 434

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALLSACQ 243
              +     +    +   +A++ +  + G + +A   + +    P  ++  + A++SA  
Sbjct: 435 HSFIIKSGFMSNVFSG--SALLDVYAKCGSIKDA---VQTFQEMPDRNIVSWNAMISAYA 489

Query: 244 VHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
            +G  E  ++S K ++   L P+  +   +LS  S +
Sbjct: 490 QNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHS 526



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 13/214 (6%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           N ++  +C     + A + F EM +    ID FT  +++ A   +     G+Q+H+ + K
Sbjct: 183 NTLVDSYCKSNRLDLACQLFKEMPE----IDSFTFAAVLCANIGLDDIVLGQQIHSFVIK 238

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
             +  NVFV N L+  Y+   ++ DA K+F  M E+D VS+N ++ G A  G  + A  L
Sbjct: 239 TNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDL 298

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT--AIVG 208
           F ++Q T        F  +LS   +    + G Q    +     +    +E     ++V 
Sbjct: 299 FRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQ----IHAQTIVTTADSEILVGNSLVD 354

Query: 209 LLGRAGFLNEAES-FINSMSRNPGPSVYKALLSA 241
           +  + G   EAE  F N   R+  P  + A++SA
Sbjct: 355 MYAKCGKFEEAEMIFTNLTHRSAVP--WTAMISA 386



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 2/127 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R  ++W  +I G+  L   ++A + F +M++ G + DY T  +++      
Sbjct: 98  RKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGH 157

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               +  Q+   I K+GYDS + V N LV  Y     ++ A ++F  M E D  ++ ++L
Sbjct: 158 EMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVL 217

Query: 136 LGCAHHG 142
             CA+ G
Sbjct: 218 --CANIG 222



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +F+     N    N ++  Y   G + +A K+F  M ER  V+W  L+ G +     +EA
Sbjct: 69  LFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEA 128

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSAC 173
            +LF QMQ+   +PD  TF+ +LS C
Sbjct: 129 FELFVQMQRCGTEPDYVTFVTLLSGC 154


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 178/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +CD     Q V++ +R ++ +SW ++++G    G  ++AL  F +M+   I++D  T+
Sbjct: 258 YCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITL 317

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A        +GK +H LI K   + ++ ++  LV MYA CG+I+ A +VF  M  
Sbjct: 318 VGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRV 377

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++ +WN+L+ G A HG+  +A+ LF+QM+  ++ PD  TF+ +L AC HAG +D+GL  
Sbjct: 378 RNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAM 437

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+N   +E PR EHY  +V LL RA  +++A +FI +M       ++  LL AC+  
Sbjct: 438 FQAMKNKFQIE-PRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSG 496

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ ++A +  +RV++L P+    YV+LSN+      WD A  +R  M N+GI K PG SW
Sbjct: 497 GHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSW 556

Query: 306 V 306
           +
Sbjct: 557 I 557



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 139/282 (49%), Gaps = 18/282 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFT 64
           Y  C S     +V+     R+ ++WN +I    N G  E+A     EM +   +  D  T
Sbjct: 156 YHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVT 215

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + S+V A   +   + GK +H+   ++G D N+ V N ++ MY  C  I  A +VF+ + 
Sbjct: 216 MVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIR 275

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E+D++SW S+L G A  GY +EA+ LF++MQ  +I+ D  T + VLSAC   G +D+G +
Sbjct: 276 EKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQG-K 334

Query: 185 YFYLMRN------DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
           Y +L+ +      D  LE       TA+V +  + G ++ A      M R      + AL
Sbjct: 335 YIHLLIDKFEINCDLVLE-------TALVDMYAKCGSIDLALQVFRRM-RVRNVFTWNAL 386

Query: 239 LSACQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
           +    +HG+ E A+    ++    L P+D     LL   S A
Sbjct: 387 IGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHA 428



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 88/168 (52%), Gaps = 1/168 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + +++ ++  +    N +I G+    +  +A+  +  M + G+ +D +T   ++ A   +
Sbjct: 65  RKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARL 124

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              K G++ H  + K G+ S++FV N L+  Y  CG+   A  VF     RD+V+WN ++
Sbjct: 125 GAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMI 184

Query: 136 LGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKG 182
               + G S +A  L ++M K + ++PD  T + ++ AC   G +++G
Sbjct: 185 NAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG 232



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC--GAINDANKVFSSMDERDLVSWNS 133
           +   + KQ HAL+ +     N    ++L+   A+   G +N A K+F+ M   D    N+
Sbjct: 22  TSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNT 81

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++ G A      EAV L+  M +  +  D  T+  VL+AC   G +  G ++
Sbjct: 82  MIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRF 133


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 186/302 (61%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    + + +++++  R+ + W A+I+ +   G  E+ L+ F++MRQA +  D  T 
Sbjct: 396 YAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATF 455

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   I+    GKQ+H+ I K G+ SNVF  + L+ +YA CG+I DA + F  M +
Sbjct: 456 ASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPD 515

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++VSWN+++   A +G +   ++ F++M  + ++PD  +FL VLSAC H+G +++GL +
Sbjct: 516 RNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWH 575

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M     L+ PR EHY ++V +L R+G  NEAE  +  M  +P   ++ ++L+AC++H
Sbjct: 576 FNSMTQIYKLD-PRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIH 634

Query: 246 GNREIAVRSAKRVLDLWP-NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
            N+E+A R+A ++ ++    D A YV +SN+  A   W++   +   M +RG++K P YS
Sbjct: 635 KNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYS 694

Query: 305 WV 306
           WV
Sbjct: 695 WV 696



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 130/277 (46%), Gaps = 9/277 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+ DS +D + ++  +  ++ +S+N II+G+   G  + A   F E++    D   F  
Sbjct: 295 YSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPF 354

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++        ++ G+Q+HA       DS + V N LV MYA CG   +A  +F+++  
Sbjct: 355 ATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTH 414

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R  V W +++      G+  E +QLF +M++  +  D  TF  +L A      +  G Q 
Sbjct: 415 RSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQL 474

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALLSACQ 243
              +     +    +   +A++ +  + G + +A   + +    P  ++  + A++SA  
Sbjct: 475 HSFIIKSGFMSNVFSG--SALLDVYAKCGSIKDA---VQTFQEMPDRNIVSWNAMISAYA 529

Query: 244 VHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
            +G  E  ++S K ++   L P+  +   +LS  S +
Sbjct: 530 QNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHS 566



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 2/165 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R  ++W  +I G+  L   ++A + F +M++ G + DY T  +++      
Sbjct: 103 RKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGH 162

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               +  Q+   I K+GYDS + V N LV  Y     ++ A ++F  M E D VS+N+++
Sbjct: 163 EMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMI 222

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            G +  G   +AV LF +MQ + +KP   TF  VL  C + G  D
Sbjct: 223 TGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDD 265



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 117/243 (48%), Gaps = 11/243 (4%)

Query: 4   LTYSRCDSS-LDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           L  S C S+ LD    ++  +   + +S+NA+I G+   G  E+A+  F EM+ +G+   
Sbjct: 190 LVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPT 249

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            FT  +++ A   +     G+Q+H+ + K  +  NVFV N L+  Y+   ++ DA K+F 
Sbjct: 250 EFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFD 309

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M E+D VS+N ++ G A  G  + A  LF ++Q T        F  +LS   +    + 
Sbjct: 310 EMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEM 369

Query: 182 GLQYFYLMRNDASLEPPRAEHYT--AIVGLLGRAGFLNEAES-FINSMSRNPGPSVYKAL 238
           G Q    +     +    +E     ++V +  + G   EAE  F N   R+  P  + A+
Sbjct: 370 GRQ----IHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVP--WTAM 423

Query: 239 LSA 241
           +SA
Sbjct: 424 ISA 426



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +F+     N    N ++  Y   G + +A K+F  M ER  V+W  L+ G +     +EA
Sbjct: 74  LFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEA 133

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSAC 173
            +LF QMQ+   +PD  TF+ +LS C
Sbjct: 134 FELFVQMQRCGTEPDYVTFVTLLSGC 159


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/289 (36%), Positives = 172/289 (59%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+  SWNA+I G+   GSGE+ALK  S+M + G+  D+ T+ S++ A   ++ 
Sbjct: 255 LFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLAS 314

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            +EG++ H L+ K GY+S + + N L+ MY  CG+I D+   F  +D  D+VSWN+++  
Sbjct: 315 LQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAA 374

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG+   A+  F +M+   ++PDG TFL +LSAC HAG + + L +F  M     +  
Sbjct: 375 FARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKI-V 433

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           PR EH+  +V +L R G + +A   I  M       ++ ALL+AC VH N ++   +AK+
Sbjct: 434 PRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKK 493

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++L P +   YV+LSN+  A   W +   +R LM  +G++K+P YSW+
Sbjct: 494 IVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWM 542



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 112/269 (41%), Gaps = 44/269 (16%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           R D   +   ++  +  RN IS+ A++ G+  +G  EQA   F+ M Q           +
Sbjct: 152 RYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQ----------KN 201

Query: 68  IVGAIGVISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +V    +ISG+ E  +      +F+   D N+     ++  Y   G  + A  +F  +  
Sbjct: 202 VVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPC 261

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDL SWN+++ G A +G   EA++L  QM K  ++PD +T + VL+AC     + +G + 
Sbjct: 262 RDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKT 321

Query: 186 FYLMRNDA-----------------------------SLEPPRAEHYTAIVGLLGRAGFL 216
             L+                                  ++ P    + A++    R GF 
Sbjct: 322 HVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFY 381

Query: 217 NEAESFINSMSRN---PGPSVYKALLSAC 242
           + A +    M  N   P    + +LLSAC
Sbjct: 382 DRALASFGEMRSNRVEPDGITFLSLLSAC 410



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 12/175 (6%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S LD +  +  +   + +SWNA+IA F   G  ++AL  F EMR   ++ D 
Sbjct: 341 ITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDG 400

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALI--FKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            T  S++ A G      E     +++I  +KI      F    LV + +  G +  A K+
Sbjct: 401 ITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFAC--LVDILSRGGQVEKAYKI 458

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLS 171
              M  E D   W +LL  C  H      V+L E   K   E++P  +   VVLS
Sbjct: 459 IQEMPFEADCGIWGALLAACHVH----LNVKLGELAAKKIVELEPQNSGAYVVLS 509



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 14/149 (9%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           +Q H L  K+    +V+  N  +   A  G I  A ++F  M  RD VSWNS++ G   +
Sbjct: 32  RQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKN 91

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDASLEPPR 199
           G   E+ +LF  M    +     ++  +++ C     ID+  QYF  M  RN AS     
Sbjct: 92  GCFDESKRLFGLMPTKNV----VSWNSMIAGCIEDERIDEAWQYFQAMPQRNTAS----- 142

Query: 200 AEHYTAIVGLLGRAGFLNEAESFINSMSR 228
              + A++  L R   + EA      M R
Sbjct: 143 ---WNAMISGLVRYDRVEEASRLFEEMPR 168



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 109/270 (40%), Gaps = 40/270 (14%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-- 58
           +QI   +R  +    + ++  +  R+ +SWN+II G+   G  +++ + F  M    +  
Sbjct: 52  VQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVS 111

Query: 59  ------------DID----YFTIT---SIVGAIGVISGFKEGKQMH--ALIFKIGYDSNV 97
                        ID    YF      +      +ISG     ++   + +F+     NV
Sbjct: 112 WNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNV 171

Query: 98  FVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157
                +V  YA  G I  A  +F+ M ++++VSW  ++ G   +G   EA  LFEQM   
Sbjct: 172 ISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDK 231

Query: 158 EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDASLEPPRAEHYTAIVGLLGRAGF 215
            I         +++  C  G  DK    F  +  R+ AS        + A++    + G 
Sbjct: 232 NI----VAMTAMITGYCKEGKTDKAKILFDQIPCRDLAS--------WNAMITGYAQNGS 279

Query: 216 LNEA---ESFINSMSRNPGPSVYKALLSAC 242
             EA    S +  M   P  S   ++L+AC
Sbjct: 280 GEEALKLHSQMLKMGMQPDHSTLISVLTAC 309


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 180/305 (59%), Gaps = 8/305 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +    +NV+ ++   N +SWN +I+G+  +GS  +AL  F++MR+AG+  D  T 
Sbjct: 353 YFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITF 412

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A   ++  ++GK++H  I +   + N  V   L+ MYA CGA+++A  +F+ + E
Sbjct: 413 TSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPE 472

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSW S++     HG + EA++LFE+MQ+++ KPD  TFL +LSAC HAG +D+G  Y
Sbjct: 473 RDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYY 532

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNP----GPSVYKALLSA 241
           F  M  +   +P   EHY+ ++ LLGR G L EA   +    R P       +   L SA
Sbjct: 533 FNQMIAEYGFKPA-VEHYSCLIDLLGRVGRLREAYEILQ---RTPDIREDVGLLSTLFSA 588

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C +H   ++  +  + +++  P+DP+ Y++LSN+  +   WD+   +R  +   G++K P
Sbjct: 589 CHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNP 648

Query: 302 GYSWV 306
           G SW+
Sbjct: 649 GCSWI 653



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 136/275 (49%), Gaps = 5/275 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + V+  ++ +N +SWN++IAG+   G  +  ++ F  M + GI     T+
Sbjct: 252 YGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTL 311

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+ A       + GK +H  I +   ++++FV + L+ +Y  CG I  A  VF +M +
Sbjct: 312 SSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPK 371

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            ++VSWN ++ G    G   EA+ +F  M+K  +KPD  TF  VL AC     ++KG + 
Sbjct: 372 TNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEI 431

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              +  ++ LE        A++ +  + G ++EA    N +      S + ++++A   H
Sbjct: 432 HNFII-ESKLEINEVV-MGALLDMYAKCGAVDEALHIFNQLPERDFVS-WTSMIAAYGSH 488

Query: 246 GNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
           G    A++  +++   D  P+      +LS  S A
Sbjct: 489 GQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHA 523



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 122/227 (53%), Gaps = 8/227 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+   D   ++  +  R+  SWN +I+ +   G  E+AL+ F EM+ +G   D  T+
Sbjct: 151 YAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTL 210

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++ +   +   + GK++H  + + G+  + FV + LV MY  CG +  A +VF  +  
Sbjct: 211 TTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQR 270

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           +++VSWNS++ G +  G S+  ++LF +M +  I+P  TT   +L AC  +  +  G   
Sbjct: 271 KNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFI 330

Query: 185 YFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRN 229
           + Y++RN        A+ +  ++++ L  + G +  AE+   +M + 
Sbjct: 331 HGYIIRNRV-----EADIFVNSSLIDLYFKCGNIGSAENVFQNMPKT 372



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 106/215 (49%), Gaps = 6/215 (2%)

Query: 18  VYSSVRTRNQIS-WNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDIDYFTITSIVGAIGVI 75
           V+ ++     I+ WN ++A         + L+ F  +     +  D FT  S++ A   +
Sbjct: 60  VFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGL 119

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                GK +H  + K G+  +V V +  V MYA C    DA K+F  M ERD+ SWN+++
Sbjct: 120 GRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVI 179

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
                 G   +A++LFE+M+ +  KPD  T   V+S+C     +++G + +  L+R+  +
Sbjct: 180 SCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFA 239

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
           L+   +   +A+V + G+ G L  A+     + R 
Sbjct: 240 LDGFVS---SALVDMYGKCGCLEMAKEVFEQIQRK 271


>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 112/287 (39%), Positives = 170/287 (59%), Gaps = 1/287 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ ISW ++I GF   G  EQAL+ F EM+ AG++ DY TI S++ A   +  
Sbjct: 180 LFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGA 239

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G  ++  + K  +  N+ + N L+ MY+ CG I  A +VF  M +R LVSWNS+++G
Sbjct: 240 LGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVG 299

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G++ EA++ F  M+K   +PDG +F   L+AC H+G +D+GLQ+F +M+    +  
Sbjct: 300 FALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKIS- 358

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           PR EHY  +V L  RAG L +A + I +M   P   V  +LL+AC+ HG+  +A R  K 
Sbjct: 359 PRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLAERLMKY 418

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           + ++ P   + YVLLSN+  A   WD A  +R  M   GI KKPG+S
Sbjct: 419 LCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFS 465



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 12/187 (6%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG--VISGFKEGKQMH 85
           +SW + IA  C  G   +A   FS M+ AG+  ++ T  +++ A     + G + G  +H
Sbjct: 55  VSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIH 114

Query: 86  ALIFKIGYDS-NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           A + K+G D+ NV V   LV MY+ CG ++ A  +F  M  R+ VSWN+++ GC  +G  
Sbjct: 115 AYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEV 174

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
            EA+ LF+QM +     D  ++  ++      G  ++ L++F  M+  A +EP     Y 
Sbjct: 175 GEAIVLFDQMSER----DAISWTSMIGGFVKKGCFEQALEWFREMQL-AGVEP----DYV 225

Query: 205 AIVGLLG 211
            I+ +L 
Sbjct: 226 TIISVLA 232



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YSRC      + V+  +  R+ +SWN++I GF   G  E+AL+ F+ MR+ G   D  + 
Sbjct: 269 YSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSF 328

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           T  + A        EG Q   ++ +       +     LV +Y+  G + DA  V ++M 
Sbjct: 329 TGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMP 388

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLS 171
            + + V   SLL  C  HG     V L E++ K   E+ P   +  V+LS
Sbjct: 389 MKPNEVVLGSLLAACRTHG----DVGLAERLMKYLCEVDPGSDSNYVLLS 434



 Score = 37.4 bits (85), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +VSW S +     +G   EA   F +MQ   ++P+  TFL +LSAC    F  +GL++
Sbjct: 54  IVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSAC--TDFPLEGLRF 109


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 175/302 (57%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C   LD    V++ +  ++ I WN++I      G   +A+  F +M   G   D  +
Sbjct: 406 YAKC-GRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVS 464

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I+  + A   +     GK++H L+ K    S+++ ++ L+ MYA CG +N + +VF  M 
Sbjct: 465 ISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQ 524

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E++ VSWNS++    +HG  +E + LF +M +  I+PD  TFL ++SAC HAG +D+G++
Sbjct: 525 EKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIR 584

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           Y++LM  +  + P R EHY  +  + GRAG L+EA   INSM   P   V+  LL AC +
Sbjct: 585 YYHLMTEEYGI-PARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHI 643

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN E+A  ++K + DL P +   YVLL+NV      W     +R++M  RG+RK PGYS
Sbjct: 644 HGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYS 703

Query: 305 WV 306
           W+
Sbjct: 704 WI 705



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 98/179 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R  S  D +N++ +++     +WN +I GF  +G    AL  + +M  AG+  D +T 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             +V A   +   K GK +H  +  +G   +VFV + L+ +YA  G ++DA  +F ++ +
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +D V WN +L G   +G S  A+++F +M+ +EIKP+  TF  VLS C     +D G Q
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D Q ++ ++  ++ + WN ++ G+   G    A+K F EMR + I  +  T   ++    
Sbjct: 111 DAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCA 170

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
             +    G Q+H +    G + +  V N L+ MY+ C  +  A K+F ++ + DLVSWN 
Sbjct: 171 SEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNG 230

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
           ++ G   +G   EA  LF  M    IKPD  TF
Sbjct: 231 IISGYVQNGLMGEAEHLFRGMISAGIKPDSITF 263



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 119/245 (48%), Gaps = 9/245 (3%)

Query: 6   YSRC-DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y +C D  +  +N+  S  + + +    +I+G+   G  ++AL+ F  + Q  +     T
Sbjct: 305 YFKCRDVEMAQKNLCQS-SSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVT 363

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +SI  A   ++    GK++H  I K   D    V + ++ MYA CG ++ A +VF+ + 
Sbjct: 364 FSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRIT 423

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E+D + WNS++  C+ +G   EA+ LF QM     + D  +    LSAC +   +  G +
Sbjct: 424 EKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKE 483

Query: 185 YFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
              LM       P R++ Y  ++++ +  + G LN +    + M      S + +++SA 
Sbjct: 484 IHGLMIKG----PLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVS-WNSIISAY 538

Query: 243 QVHGN 247
             HG+
Sbjct: 539 GNHGD 543



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 78/167 (46%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + ++ ++   + +SWN II+G+   G   +A   F  M  AGI  D  T 
Sbjct: 204 YSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITF 263

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S +  +  +   K  K++H  I +     +VF+++ L+ +Y  C  +  A K       
Sbjct: 264 ASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSS 323

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            D V   +++ G   +G ++EA++ F  + +  +KP   TF  +  A
Sbjct: 324 FDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPA 370



 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 33/69 (47%)

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
           MY   G++ DA  +F ++      +WN ++ G    G    A+  + +M    + PD  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 166 FLVVLSACC 174
           F  V+ ACC
Sbjct: 61  FPYVVKACC 69


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 180/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++CD   +   +++ +  ++ + W A+I+G+   G  E  LK F EM +A I  D  T 
Sbjct: 386 YAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATY 445

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A   ++    GKQ+H+ I + G  SNVF  + LV MYA CG+I +A ++F  M  
Sbjct: 446 ASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPV 505

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWN+L+   A +G    A++ FEQM  + ++P+  +FL +L AC H G +++GLQY
Sbjct: 506 RNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQY 565

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M     LE PR EHY ++V +L R+G  +EAE  +  M   P   ++ ++L++C++H
Sbjct: 566 FNSMTQVYKLE-PRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIH 624

Query: 246 GNREIAVRSAKRVLDLWP-NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
            N+E+A+++A ++ ++    D A YV +SN+  A   WD  G ++  +  RGIRK P YS
Sbjct: 625 KNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYS 684

Query: 305 WV 306
           WV
Sbjct: 685 WV 686



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 89/169 (52%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++++ S+  R+ ++W  +I G+       +A   F++M + G+  D+ T+ +++      
Sbjct: 93  RSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEF 152

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               E  Q+H  + K+GYDS + V N L+  Y    ++  A  +F  M E+D V++N+LL
Sbjct: 153 ESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALL 212

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G +  G++ +A+ LF +MQ    +P   TF  VL+A      I+ G Q
Sbjct: 213 TGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQ 261



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 124/269 (46%), Gaps = 5/269 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+ D  ++ + ++  +   + IS+N +I      G  E++L+ F E++    D   F  
Sbjct: 285 YSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPF 344

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++         + G+Q+H+        S V V N LV MYA C    +AN++F+ +  
Sbjct: 345 ATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAH 404

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +  V W +L+ G    G   + ++LF +M + +I  D  T+  +L AC +   +  G Q 
Sbjct: 405 QSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQL 464

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              +     L    +   +A+V +  + G + EA      M      S + AL+SA   +
Sbjct: 465 HSRIIRSGCLSNVFSG--SALVDMYAKCGSIKEALQMFQEMPVRNSVS-WNALISAYAQN 521

Query: 246 GNREIAVRSAKRVLD--LWPNDPAIYVLL 272
           G+   A+RS ++++   L PN  +   +L
Sbjct: 522 GDGGHALRSFEQMIHSGLQPNSVSFLSIL 550



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 88/168 (52%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +++  +  ++ +++NA++ G+   G    A+  F +M+  G     FT  +++ A   + 
Sbjct: 195 HLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMD 254

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             + G+Q+H+ + K  +  NVFV N L+  Y+    I +A K+F  M E D +S+N L+ 
Sbjct: 255 DIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLIT 314

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            CA +G   E+++LF ++Q T        F  +LS   ++  ++ G Q
Sbjct: 315 CCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQ 362



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 38/76 (50%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           NV   N ++  Y   G ++ A  +F SM +R +V+W  L+ G A H    EA  LF  M 
Sbjct: 72  NVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMC 131

Query: 156 KTEIKPDGTTFLVVLS 171
           +  + PD  T   +LS
Sbjct: 132 RHGMVPDHITLATLLS 147


>gi|125555425|gb|EAZ01031.1| hypothetical protein OsI_23065 [Oryza sativa Indica Group]
          Length = 671

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 181/302 (59%), Gaps = 1/302 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C      + V++++  ++ ISW A++  +      ++AL  F EM + G++   
Sbjct: 351 VTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSI 410

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F ITS++ A    S    G Q+H+ + K+G D +  V+N LV MYA CG +  A K+F+S
Sbjct: 411 FCITSVLRACSATSSLSCGWQIHSRVVKLGVDDDTSVENALVTMYAKCGVVQVALKIFNS 470

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              R ++SWN+L+   + HG    A+QLF+ MQ+  + PD  TF+ +LS+C   G + +G
Sbjct: 471 TRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSSCSRMGLVAEG 530

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M+   +LE P+ EHYT +V L  RAG  ++A  FI++M   P   V++ALL++C
Sbjct: 531 CEYFKQMKTKYNLE-PKMEHYTCMVDLFARAGRFSDAMKFIDAMPCQPDQLVWEALLASC 589

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN ++   +AK++L++ P DP+ Y++LS++  + D WD+    RTL+  + +RK  G
Sbjct: 590 RVHGNLDLGRMAAKKILEIKPEDPSPYIILSSIHASIDMWDEKARNRTLLDFQQLRKDVG 649

Query: 303 YS 304
            S
Sbjct: 650 SS 651



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 9/222 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID--I 60
           +L+Y       D + V+  +  RN +SW+ +I     LG    AL  F+ M + G     
Sbjct: 44  LLSYQARGHLADARGVFDEMPRRNVVSWSVLIVASSRLGVLGDALSLFAGMLRGGERDRP 103

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           + FT+ ++V           G+Q+HA   K+G D +  V   LV MYA CG +  + + F
Sbjct: 104 NSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRAF 163

Query: 121 SSMDERDLVSWNSLLLGCAHH---GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
               +R ++SW S++    +H   GY   A+ LF++M   ++ P   TF  +L       
Sbjct: 164 VLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCILKVFDVPE 223

Query: 178 FIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218
            +  G Q +  L++    ++P      TA++ + GR G ++E
Sbjct: 224 LLPSGKQVHGCLVKMGTEVDPALG---TALLAMYGRCGGMDE 262



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 125/279 (44%), Gaps = 16/279 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    +   +   +R  +  S  +++  +   G   +A++ F +M    + ID   I
Sbjct: 254 YGRCGGMDEITRLACRIR-HDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAI 312

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++     +   +  K++H    K  +  +  + N +V +Y  CG I  +  VF++++ 
Sbjct: 313 TSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLEN 372

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D +SW +LL     +  S+EA+  F +M +  ++        VL AC     +  G Q 
Sbjct: 373 KDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCGWQI 432

Query: 186 FYL-----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
                   + +D S+E        A+V +  + G +  A    NS +RN G   + AL++
Sbjct: 433 HSRVVKLGVDDDTSVE-------NALVTMYAKCGVVQVALKIFNS-TRNRGIISWNALIT 484

Query: 241 ACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSK 277
           +   HGN   A++    + +  + P+D     LLS+ S+
Sbjct: 485 SFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSSCSR 523



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 10/246 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSG---EQALKCFSEMRQAGIDIDY 62
           Y++C         +     R+ +SW ++IA   N G     + A+  F +M    +    
Sbjct: 150 YAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTN 209

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T + I+    V      GKQ+H  + K+G + +  +   L+ MY  CG +++  ++   
Sbjct: 210 ATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACR 269

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +   D  S  SLL   A +G + EAV++F  M    +  D +    +L  C   G +   
Sbjct: 270 I-RHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVV 328

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            + + Y ++N   L+        AIV + G+ G +  +E   N++  N     + ALL+ 
Sbjct: 329 KEIHCYALKNFFRLDTLL---LNAIVTVYGKCGDIASSEIVFNTL-ENKDTISWTALLT- 383

Query: 242 CQVHGN 247
           C V  +
Sbjct: 384 CYVQND 389



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 26/206 (12%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           + +H    K+G  ++ ++ N L+  Y   G + DA  VF  M  R++VSW+ L++  +  
Sbjct: 22  RAVHGAAVKLGCLASTYLCNNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIVASSRL 81

Query: 142 GYSREAVQLFEQMQK--TEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-----MRNDAS 194
           G   +A+ LF  M +     +P+  T   +++ C  A     G Q         +  D S
Sbjct: 82  GVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDES 141

Query: 195 LEPPRAEHYTAI--VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV-HGN---R 248
           +     + Y     VG   RA  L    S ++  S           + AC V HG+   R
Sbjct: 142 VAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTS-----------MIACLVNHGDSGYR 190

Query: 249 EIAVRSAKR--VLDLWPNDPAIYVLL 272
           + A+   K+  VL +WP +     +L
Sbjct: 191 DTAIVLFKKMLVLKVWPTNATFSCIL 216


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + ++ +    NQISW  ++  +      E AL  FS+MR+ G   +  T 
Sbjct: 412 YAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTF 471

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + ++ +   +   + G+Q+H+L  K G+  +  V++ L+ MYA CG++ DA KVF S+ +
Sbjct: 472 SGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKD 531

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D++SW +++ G A HG +++A++LF +M+     P+  TFL +L AC H G +D+GL+Y
Sbjct: 532 PDVISWTAMISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRY 591

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+LM     L  P  EHY  +V +LGR G L EA  FI  M   P   V+  LL AC+VH
Sbjct: 592 FHLMEERYGL-VPEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVH 650

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN ++A  +A++VL   P+D A  VLLSN  +     +   ++R +M ++ +RK+ G SW
Sbjct: 651 GNIQLAKIAAQKVLSYNPDDFAALVLLSNTYREAGNIEGGLNVRNMMKSQAMRKETGMSW 710

Query: 306 V 306
           +
Sbjct: 711 I 711



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 117/237 (49%), Gaps = 4/237 (1%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           + WNA+I+GF   G GE+A+  F  M Q  I  D +T  S + +I  +   +  KQ+H +
Sbjct: 334 LPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGM 393

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           I+K G    V + N L+  YA CG ++   K+F + +E + +SW +L+   +      +A
Sbjct: 394 IWKSG-SIGVSLCNALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDA 452

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           + +F QM++   +P+  TF  VL++C     ++ G Q   L            E  + ++
Sbjct: 453 LSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVE--SVLI 510

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
            +  + G + +A     S+ ++P    + A++S    HG  + A+   +++  + PN
Sbjct: 511 DMYAKCGSVRDAIKVFESL-KDPDVISWTAMISGYAQHGMAKDALELFRKMELVLPN 566



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 121/252 (48%), Gaps = 5/252 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ YS+C      + V+  +  ++  SW  ++ G    G     +  F E+    I  D 
Sbjct: 105 VIAYSKCSDFGSARQVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVPDE 164

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           + +++ + A   +     G+ +HA +   G+ S  FV   L+ MYA  G I D+ KVF+S
Sbjct: 165 YALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNS 224

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++ R+ VSWN+++ G   +G   EA   F +M   EI+P+   F+ V  A    G ++KG
Sbjct: 225 LENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKG 284

Query: 183 LQYFYLMRNDASLEPPRAEHY-TAIVGLLGRAGFLNEAES-FINSMSRNPGPSVYKALLS 240
               Y+ R    +      H  TA++ +  + G + E+ S F+++ S       + A++S
Sbjct: 285 R---YINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMIS 341

Query: 241 ACQVHGNREIAV 252
              + G+ E A+
Sbjct: 342 GFTISGHGEEAM 353



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 85/202 (42%), Gaps = 29/202 (14%)

Query: 78  FKEGKQMHALI--FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
            K+ K +H  +  F++   S   + N+LV  Y+ C     A +VF  + ++ + SW  L+
Sbjct: 77  LKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLM 136

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----------CHAGFIDKGLQ 184
           +G   +G+ R+ +  F ++   +I PD       + AC            HA  I +G  
Sbjct: 137 VGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFS 196

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
                         R    T+++G+  + G + ++    NS+  N     + A++S    
Sbjct: 197 -------------SRTFVNTSLLGMYAKLGRIGDSCKVFNSL-ENRNQVSWNAMISGFVS 242

Query: 245 HGNREIAVRSAKRVL--DLWPN 264
           +G    A  S  R+L  ++ PN
Sbjct: 243 NGLYAEAYNSFLRMLGEEIRPN 264


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 184/304 (60%), Gaps = 4/304 (1%)

Query: 6   YSRCDSS-LDFQNVYSSVRTRNQISWNAIIAGFCNLGS-GEQALKCFSEMRQAGIDIDYF 63
           YS+C    LD + V+  +   + + WN +I+G+       ++AL+CF +++  G   D  
Sbjct: 285 YSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDC 344

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSS 122
           ++  ++ A   +S   +G+Q+H L  K+   SN + V N L+ MY+ CG + DA  +F +
Sbjct: 345 SLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDT 404

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E + VS+NS++ G A HG   +++ LF++M + +  P   TF+ VL+AC H G ++ G
Sbjct: 405 MPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDG 464

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF +M+    +EP  A H++ ++ LLGRAG L+EAE  I ++  +PG   + ALL AC
Sbjct: 465 KIYFNMMKQKFGIEP-EAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGAC 523

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN E+A+++A R+L L P + A YV+L+N+        DA  +R LM +RG++KKPG
Sbjct: 524 RIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPG 583

Query: 303 YSWV 306
            SW+
Sbjct: 584 CSWI 587



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 137/285 (48%), Gaps = 10/285 (3%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R+++SWN+++  +     G +AL+ + EM   G+ +D FT+ S++ A   +     G Q 
Sbjct: 203 RDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQF 262

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGA-INDANKVFSSMDERDLVSWNSLLLGCA-HHG 142
           HA + K GY  N  V + L+ +Y+ CG  + D  KVF  +   DLV WN+++ G + +  
Sbjct: 263 HAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYED 322

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP--RA 200
            S EA++ F Q+Q    +PD  + + V+SAC +     +G Q   L      L+ P  R 
Sbjct: 323 LSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLA---LKLDIPSNRI 379

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL- 259
               A++ +  + G L +A++  ++M  +   S Y ++++    HG    ++   +R+L 
Sbjct: 380 SVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVS-YNSMIAGYAQHGMGFQSLHLFQRMLE 438

Query: 260 -DLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
            D  P +     +L+  +      D       +    GI  + G+
Sbjct: 439 MDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGH 483



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 3/171 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
             ++  +   + +S+N +IA +   G  + A + F EMR+A +D+D FT++ I+ A G+ 
Sbjct: 94  HQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGIN 153

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-RDLVSWNSL 134
            G    +Q+HAL    G DS V V N L+  Y+  G + +A ++F  + E RD VSWNS+
Sbjct: 154 VGLI--RQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSM 211

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++    H    +A++L+ +M    +  D  T   VL+A  +   +  GLQ+
Sbjct: 212 VVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQF 262



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 29/184 (15%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +F   +D NVF  N L+  YA    +  A+++F  M + D VS+N+L+   A  G ++ A
Sbjct: 65  VFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPA 124

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSAC---------CHAGFIDKGLQYFYLMRNDASLEPP 198
            QLF +M++  +  DG T   +++AC          HA  +  GL  +  + N       
Sbjct: 125 FQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGN------- 177

Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258
                 A++    + GFL EA    + +S +     + +++ A   H       R   + 
Sbjct: 178 ------ALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQH-------REGSKA 224

Query: 259 LDLW 262
           L+L+
Sbjct: 225 LELY 228



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + GK +HAL  K    ++ ++ N  + +Y+ C  ++ A +VF    + ++ S+N+L+  
Sbjct: 24  LRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLISA 83

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
            A   Y   A QLF++M     +PD  ++  +++A    G      Q F  MR 
Sbjct: 84  YAKESYVEVAHQLFDEMP----QPDSVSYNTLIAAYARRGDTQPAFQLFLEMRE 133



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 70/149 (46%), Gaps = 2/149 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C +  D + ++ ++   N +S+N++IAG+   G G Q+L  F  M +       
Sbjct: 386 IAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTN 445

Query: 63  FTITSIVGAIGVISGFKEGK-QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T  S++ A       ++GK   + +  K G +      + ++ +    G +++A ++  
Sbjct: 446 ITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIE 505

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQ 149
           ++  +     W++LL  C  HG    A++
Sbjct: 506 TIPFDPGFFXWSALLGACRIHGNVELAIK 534


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/288 (37%), Positives = 172/288 (59%), Gaps = 1/288 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +++S +  RN  SW ++IAG+   G  ++A+  F++M +AG+  +  T+ +++ A   + 
Sbjct: 215 DLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLG 274

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G ++H    + G+  NV + N L+ MY  CG + +A KVF  M+ER +VSW++++ 
Sbjct: 275 ALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIG 334

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A HG + EA++LF  M +  I+P+G TF+ +L AC H G I +G ++F  M  D  + 
Sbjct: 335 GLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGI- 393

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
            P+ EHY  +V LL RAG L+EA  FI +M   P   V+ ALL AC+VH N E+A  + K
Sbjct: 394 IPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIK 453

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
            +L+L P +   YV+LSN+      W+D   +R  M +R ++K PG+S
Sbjct: 454 HLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWS 501



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 120/271 (44%), Gaps = 36/271 (13%)

Query: 16  QNVYSSVRTRNQIS--WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           Q ++  V  +   +  WN+ +       S   A+  F  +RQ  +  D FT +S++ A  
Sbjct: 80  QQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACL 139

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN- 132
            +     G+ +H ++ K+G+ SN+++QN +V +YA CG + +A  +F  M +RD+V+WN 
Sbjct: 140 NLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNI 199

Query: 133 ------------------------------SLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
                                         S++ G    G ++EA+ LF +M++  +K +
Sbjct: 200 MIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCN 259

Query: 163 GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESF 222
             T + VL+AC   G +D G++              R  +   ++ +  + G L EA   
Sbjct: 260 EVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISN--TLIDMYVKCGCLEEACKV 317

Query: 223 INSMSRNPGPSVYKALLSACQVHGNREIAVR 253
              M      S + A++    +HG  E A+R
Sbjct: 318 FEEMEERTVVS-WSAMIGGLAMHGRAEEALR 347



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    +   V+  +  R  +SW+A+I G    G  E+AL+ FS+M Q GI+ +  T 
Sbjct: 305 YVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTF 364

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A   +    EG++  A + +  G    +     +V + +  G +++A++   +M 
Sbjct: 365 IGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMP 424

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            + + V W +LL  C  H     A +  + +   E+ P    + VVLS
Sbjct: 425 MKPNGVVWGALLGACRVHKNVEMAEEAIKHL--LELDPLNDGYYVVLS 470



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER--DLVSWNSLLLG 137
           E +Q+HA I K     ++    R+  + A   + + A ++F  ++++  +   WNS L  
Sbjct: 43  ELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFECVEKQKPETFVWNSCLKA 102

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            A      +A+ LF ++++ ++ PD  T   VL AC
Sbjct: 103 LAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRAC 138


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 174/302 (57%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C        V+  +  ++ ++WN++I GF   G  E+AL  ++EM   GI  D FTI
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTI 225

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   I     GK++H  + K+G   N+   N L+ +YA CG + +A  +F  M +
Sbjct: 226 VSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD 285

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++ VSW SL++G A +G+ +EA++LF+ M+ TE + P   TF+ +L AC H G + +G +
Sbjct: 286 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE 345

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF  MR +  +E PR EH+  +V LL RAG + +A  +I SM   P   +++ LL AC V
Sbjct: 346 YFRRMREEYKIE-PRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTV 404

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HG+ ++A  +  ++L L PN    YVLLSN+  +   W D   IR  M   G++K PG+S
Sbjct: 405 HGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHS 464

Query: 305 WV 306
            V
Sbjct: 465 LV 466



 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 115/200 (57%), Gaps = 7/200 (3%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
           WN +I G+  +G+   A   + EMR +G ++ D  T   ++ A+  ++  + G+ +H+++
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
            + G+ S ++VQN L+ +YA CG +  A KVF  M E+DLV+WNS++ G A +G   EA+
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYT-AI 206
            L+ +M    IKPDG T + +LSAC   G +  G + + Y+++   +    R  H +  +
Sbjct: 208 ALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLT----RNLHSSNVL 263

Query: 207 VGLLGRAGFLNEAESFINSM 226
           + L  R G + EA++  + M
Sbjct: 264 LDLYARCGRVEEAKTLFDEM 283


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/288 (37%), Positives = 172/288 (59%), Gaps = 1/288 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +++S +  RN  SW ++IAG+   G  ++A+  F++M +AG+  +  T+ +++ A   + 
Sbjct: 215 DLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLG 274

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G ++H    + G+  NV + N L+ MY  CG + +A KVF  M+ER +VSW++++ 
Sbjct: 275 ALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIG 334

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A HG + EA++LF  M +  I+P+G TF+ +L AC H G I +G ++F  M  D  + 
Sbjct: 335 GLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGI- 393

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
            P+ EHY  +V LL RAG L+EA  FI +M   P   V+ ALL AC+VH N E+A  + K
Sbjct: 394 IPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIK 453

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
            +L+L P +   YV+LSN+      W+D   +R  M +R ++K PG+S
Sbjct: 454 HLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWS 501



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 120/271 (44%), Gaps = 36/271 (13%)

Query: 16  QNVYSSVRTRNQIS--WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           Q ++  V  +   +  WN+ +       S   A+  F  +RQ  +  D FT +S++ A  
Sbjct: 80  QQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACL 139

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN- 132
            +     G+ +H ++ K+G+ SN+++QN +V +YA CG + +A  +F  M +RD+V+WN 
Sbjct: 140 NLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNI 199

Query: 133 ------------------------------SLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
                                         S++ G    G ++EA+ LF +M++  +K +
Sbjct: 200 MIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCN 259

Query: 163 GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESF 222
             T + VL+AC   G +D G++              R  +   ++ +  + G L EA   
Sbjct: 260 EVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISN--TLIDMYVKCGCLEEACKV 317

Query: 223 INSMSRNPGPSVYKALLSACQVHGNREIAVR 253
              M      S + A++    +HG  E A+R
Sbjct: 318 FEEMEERTVVS-WSAMIGGLAMHGRAEEALR 347



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    +   V+  +  R  +SW+A+I G    G  E+AL+ FS+M Q GI+ +  T 
Sbjct: 305 YVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTF 364

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A   +    EG++  A + +  G    +     +V + +  G +++A++   +M 
Sbjct: 365 IGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMP 424

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            + + V W +LL  C  H     A +  + +   E+ P    + VVLS
Sbjct: 425 MKPNGVVWGALLGACRVHKNVEMAEEAIKHL--LELDPLNDGYYVVLS 470



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER--DLVSWNSLLLG 137
           E +Q+HA I K     ++    R+  + A   + + A ++F  ++++  +   WNS L  
Sbjct: 43  ELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKA 102

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            A      +A+ LF ++++ ++ PD  T   VL AC
Sbjct: 103 LAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRAC 138


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 178/305 (58%), Gaps = 3/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C      + V+ ++  ++ +SW  ++ G+        A   F EM+ A +    
Sbjct: 365 INMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHE 424

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             + S++ A   +    +G+++H+ I ++    ++ +++ LV MYA CG I+ A+++F  
Sbjct: 425 MALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRK 484

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDK 181
           M  +  +SWN+++ G A +GY +EAV+LF+QM +  + KPDG T   VL AC H G +D+
Sbjct: 485 MQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDE 544

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           GL+YFYLM +   +  P  EHY  IV LLGRAG L+EA  FI  M   P P ++ +LL+A
Sbjct: 545 GLRYFYLMSSLGVV--PDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAA 602

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+VH   ++     + ++++ PND  ++VL+SN+      WDD   +R LM +RGI K P
Sbjct: 603 CRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTP 662

Query: 302 GYSWV 306
           G+S V
Sbjct: 663 GHSSV 667



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 113/214 (52%), Gaps = 4/214 (1%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +  R+ +SW ++I+     G  ++ LK  SEM+  GI  +  TI S++ A G   
Sbjct: 177 KVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQ 236

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
              EG+ ++  + K G +++V ++N L+ MY  CG ++DA + F +M  R   SWN+L+ 
Sbjct: 237 AVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLID 296

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASL 195
           G   +   +EA+++FE+M    + PDG T + VLSAC   G + KG+  + Y+  N    
Sbjct: 297 GFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICC 356

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
           +        +++ +  + G +  AE    +M++ 
Sbjct: 357 DNILT---NSLINMYAKCGDMAAAERVFQTMTKK 387



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 96/170 (56%), Gaps = 3/170 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +   N   WN +I G+ +  +   AL  F EMR+ G+  D +T+ ++V A    
Sbjct: 72  RKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAF 131

Query: 76  SGFK---EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           +G K    G  +HAL+ +IG+ S+VFV + LV  Y    ++ +A+KVF  M ERD+VSW 
Sbjct: 132 AGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWT 191

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           S++  CA  G+  + +++  +MQ   I P+  T + +LSAC     +D+G
Sbjct: 192 SMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEG 241



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 125/269 (46%), Gaps = 13/269 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C    D    + ++  R   SWN +I GF      ++AL+ F EM   G+  D 
Sbjct: 264 ISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDG 323

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ A   +   ++G  +H+ I   G   +  + N L+ MYA CG +  A +VF +
Sbjct: 324 ITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQT 383

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ++D+VSW  ++ G         A  LFE+M+  E+       + +LSAC   G +DKG
Sbjct: 384 MTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKG 443

Query: 183 LQ-YFYL----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
            + + Y+    +  D  LE       +A+V +  + G ++ A      M      S + A
Sbjct: 444 REIHSYIEEMNVAKDLCLE-------SALVDMYAKCGCIDTASEIFRKMQHKQTLS-WNA 495

Query: 238 LLSACQVHGNREIAVRSAKRVLDLWPNDP 266
           ++     +G  + AV    ++L+L    P
Sbjct: 496 MIGGLASNGYGKEAVELFDQMLELQDPKP 524



 Score = 43.9 bits (102), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAIND---ANKVFSSMDERDLVSWNSLLLGCA 139
           ++H  + +    S+ FV  RL+ + A   A +D   A KVF  M + +   WN ++ G +
Sbjct: 35  ELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYS 94

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTF 166
                R+A+ +F +M++  + PD  T 
Sbjct: 95  SCEAPRDALAVFREMRRRGVSPDNYTM 121


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 178/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  + ++++  +  R+ ++W A+I  +   G  ++    F+++ ++GI  + FT 
Sbjct: 248 YGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTF 307

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + ++ A    +  + GK++H  + ++G+D   F  + LV MY+ CG +  A +VF    +
Sbjct: 308 SGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQ 367

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            DL SW SL+ G A +G   EA++ FE + K+  +PD  TF+ VLSAC HAG +DKGL Y
Sbjct: 368 PDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDY 427

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ ++    L    A+HY  I+ LL R+G  +EAE+ I+ MS  P   ++ +LL  C++H
Sbjct: 428 FHSIKEQYGLTHT-ADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIH 486

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN ++A R+A+ + ++ P +PA YV L+N+      W +   IR  M +RG+ KKPG SW
Sbjct: 487 GNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSW 546

Query: 306 V 306
           +
Sbjct: 547 I 547



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 129/283 (45%), Gaps = 41/283 (14%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM------------ 53
           Y++CDS +D Q ++  +  R+  SWN +I+G+  +G  ++A   F +M            
Sbjct: 115 YAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMI 174

Query: 54  --------------------RQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY 93
                               R      + FT++S + A   +   + GK++H  I + G 
Sbjct: 175 SGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGL 234

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           DS+  V + L  MY  CG+I +A  +F  M +RD+V+W +++      G  +E   LF  
Sbjct: 235 DSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFAD 294

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGR 212
           + ++ I+P+  TF  VL+AC +    + G + + Y+ R       P +   +A+V +  +
Sbjct: 295 LLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFD---PFSFAASALVHMYSK 351

Query: 213 AGFLNEAESFINSMSRNPGPSVYK--ALLSACQVHGNREIAVR 253
            G +  AE         P P ++   +L++    +G  + A+R
Sbjct: 352 CGNMVSAERVFK---ETPQPDLFSWTSLIAGYAQNGQPDEAIR 391



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 8/165 (4%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N   ++  I   C     ++AL+   ++ +    +    I S + +       ++GK++H
Sbjct: 38  NHKRFDEAIHILCQQNRLKEALQILHQIDKPSASVYSTLIQSCIKS----RLLQQGKKVH 93

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
             I   G+   +F+ NRL+ MYA C ++ D+ K+F  M ERDL SWN L+ G A  G  +
Sbjct: 94  QHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQ 153

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
           EA  LF++M +     D  ++  ++S        ++ L+ F +M+
Sbjct: 154 EAKSLFDKMPER----DNFSWTAMISGYVRHDRPNEALELFRMMK 194


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 178/305 (58%), Gaps = 3/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C      + V+ ++  ++ +SW  ++ G+        A   F EM+ A +    
Sbjct: 365 INMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHE 424

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             + S++ A   +    +G+++H+ I ++    ++ +++ LV MYA CG I+ A+++F  
Sbjct: 425 MALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRK 484

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDK 181
           M  +  +SWN+++ G A +GY +EAV+LF+QM +  + KPDG T   VL AC H G +D+
Sbjct: 485 MQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDE 544

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           GL+YFYLM +   +  P  EHY  IV LLGRAG L+EA  FI  M   P P ++ +LL+A
Sbjct: 545 GLRYFYLMSSLGVV--PDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAA 602

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+VH   ++     + ++++ PND  ++VL+SN+      WDD   +R LM +RGI K P
Sbjct: 603 CRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTP 662

Query: 302 GYSWV 306
           G+S V
Sbjct: 663 GHSSV 667



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 113/214 (52%), Gaps = 4/214 (1%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +  R+ +SW ++I+     G  ++ LK  SEM+  GI  +  TI S++ A G   
Sbjct: 177 KVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQ 236

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
              EG+ ++  + K G +++V ++N L+ MY  CG ++DA + F +M  R   SWN+L+ 
Sbjct: 237 AVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLID 296

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASL 195
           G   +   +EA+++FE+M    + PDG T + VLSAC   G + KG+  + Y+  N    
Sbjct: 297 GFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICC 356

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
           +        +++ +  + G +  AE    +M++ 
Sbjct: 357 DNILT---NSLINMYAKCGDMAAAERVFQTMTKK 387



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 96/170 (56%), Gaps = 3/170 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +   N   WN +I G+ +  +   AL  F EMR+ G+  D +T+ ++V A    
Sbjct: 72  RKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAF 131

Query: 76  SGFK---EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           +G K    G  +HAL+ +IG+ S+VFV + LV  Y    ++ +A+KVF  M ERD+VSW 
Sbjct: 132 AGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWT 191

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           S++  CA  G+  + +++  +MQ   I P+  T + +LSAC     +D+G
Sbjct: 192 SMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEG 241



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 125/269 (46%), Gaps = 13/269 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C    D    + ++  R   SWN +I GF      ++AL+ F EM   G+  D 
Sbjct: 264 ISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDG 323

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ A   +   ++G  +H+ I   G   +  + N L+ MYA CG +  A +VF +
Sbjct: 324 ITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQT 383

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ++D+VSW  ++ G         A  LFE+M+  E+       + +LSAC   G +DKG
Sbjct: 384 MTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKG 443

Query: 183 LQ-YFYL----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
            + + Y+    +  D  LE       +A+V +  + G ++ A      M      S + A
Sbjct: 444 REIHSYIEEMNVAKDLCLE-------SALVDMYAKCGCIDTASEIFRKMQHKQTLS-WNA 495

Query: 238 LLSACQVHGNREIAVRSAKRVLDLWPNDP 266
           ++     +G  + AV    ++L+L    P
Sbjct: 496 MIGGLASNGYGKEAVELFDQMLELQDPKP 524



 Score = 43.9 bits (102), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAIND---ANKVFSSMDERDLVSWNSLLLGCA 139
           ++H  + +    S+ FV  RL+ + A   A +D   A KVF  M + +   WN ++ G +
Sbjct: 35  ELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYS 94

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTF 166
                R+A+ +F +M++  + PD  T 
Sbjct: 95  SCEAPRDALAVFREMRRRGVSPDNYTM 121


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 173/304 (56%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C+       +++ + ++N++SWN +I G+ NLG G +A   F E  +  + +  
Sbjct: 390 IDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTE 449

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T +S +GA   ++    G Q+H L  K      V V N L+ MYA CG I  A  VF+ 
Sbjct: 450 VTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNE 509

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+  D+ SWN+L+ G + HG  R+A+++ + M+  + KP+G TFL VLS C +AG ID+G
Sbjct: 510 METIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQG 569

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + F  M  D  +EP   EHYT +V LLGR+G L++A   I  +   P   +++A+LSA 
Sbjct: 570 QECFESMIRDHGIEPC-LEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSAS 628

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
               N E A RSA+ +L + P D A YVL+SN+      W +   IR  M   G++K+PG
Sbjct: 629 MNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPG 688

Query: 303 YSWV 306
            SW+
Sbjct: 689 LSWI 692



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 141/283 (49%), Gaps = 21/283 (7%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     D   V++ +   + + W+ +IA FC  G   +A+  F  MR+A +  + FT+
Sbjct: 292 YTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTL 351

Query: 66  TSIVG--AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           +SI+   AIG  SG   G+Q+H L+ K+G+D +++V N L+ +YA C  ++ A K+F+ +
Sbjct: 352 SSILNGCAIGKCSGL--GEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAEL 409

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             ++ VSWN++++G  + G   +A  +F +  + ++     TF   L AC     +D G+
Sbjct: 410 SSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGV 469

Query: 184 QY--FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           Q     +  N+A     +     +++ +  + G +  A+S  N M      S + AL+S 
Sbjct: 470 QVHGLAIKTNNAK----KVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVAS-WNALISG 524

Query: 242 CQVHGNREIAVRSAKRVLDLW------PNDPAIYVLLSNVSKA 278
              HG      R A R+LD+       PN      +LS  S A
Sbjct: 525 YSTHG----LGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNA 563



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 85/171 (49%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS C S    + V+  +  ++ + W  I++ +   G  E +LK  S MR AG   + 
Sbjct: 188 INAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNN 247

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T  + + A   +  F   K +H  I K  Y  +  V   L+ +Y   G ++DA KVF+ 
Sbjct: 248 YTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNE 307

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           M + D+V W+ ++     +G+  EAV LF +M++  + P+  T   +L+ C
Sbjct: 308 MPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGC 358



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 104/218 (47%), Gaps = 10/218 (4%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D  N++  +  RN +S+  +  G+    + +  +  +S + + G +++    TS +    
Sbjct: 102 DALNLFDEMPERNNVSFVTLAQGY----ACQDPIGLYSRLHREGHELNPHVFTSFLKLFV 157

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +   +    +H+ I K+GYDSN FV   L+  Y++CG+++ A  VF  +  +D+V W  
Sbjct: 158 SLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAG 217

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID--KGLQYFYLMRN 191
           ++     +GY  ++++L   M+     P+  TF   L A    G  D  KG+ +  +++ 
Sbjct: 218 IVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGV-HGQILKT 276

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
              L+P        ++ L  + G +++A    N M +N
Sbjct: 277 CYVLDPRVG---VGLLQLYTQLGDMSDAFKVFNEMPKN 311


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 176/303 (58%), Gaps = 1/303 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+     D + V+S ++ R+ + WNA+I G      GE+A+K F+ +R +G+  + 
Sbjct: 482 IDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNE 541

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  ++V     ++    G+Q HA I K G DS+  + N L+ MYA CG I +   +F S
Sbjct: 542 FTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRLLFES 601

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              +D++ WNS++   A HG++ EA+ +F  M+   ++P+  TF+ VLSAC HAG +D+G
Sbjct: 602 TLGKDVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVDEG 661

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L +F  M+   ++EP   EHY ++V L GR+G L+ A+ FI  M   P  +++++LLSAC
Sbjct: 662 LHHFNSMKTKYAVEPG-TEHYASVVNLFGRSGKLHAAKEFIERMPIEPVATIWRSLLSAC 720

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            + GN EI   + +  L   P D    VL+SN+  +   W DA  +R  M   G+ K+PG
Sbjct: 721 HLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASKGLWADAQKLRQGMDCAGVVKEPG 780

Query: 303 YSW 305
           YSW
Sbjct: 781 YSW 783



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 143/274 (52%), Gaps = 7/274 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C   L  + ++ S+  RN +SW  +IAG+       +A+  F ++ QAG   D F  
Sbjct: 283 YCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFAC 342

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI+ + G ++   +G+Q+HA + K   +S+ +V+N L+ MYA C  + +A  VF ++ E
Sbjct: 343 TSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAE 402

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            D +S+N+++ G A  G    AV++F +M+   +KP   TF+ +L        ++   Q 
Sbjct: 403 DDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQI 462

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +  ++++  SL+       +A++ +  +   +++A+  + S+ +N    ++ A++     
Sbjct: 463 HGLIVKSGTSLDLYAG---SALIDVYSKFSLVDDAK-LVFSLMQNRDMVIWNAMIFGLAQ 518

Query: 245 HGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVS 276
           +   E AV+  +  RV  L PN+     L++  S
Sbjct: 519 NERGEEAVKLFARLRVSGLTPNEFTFVALVTVAS 552



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 125/250 (50%), Gaps = 7/250 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+   + + V+ ++   + IS+NA+I G+  LG    A++ F +MR   +     T 
Sbjct: 384 YAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTF 443

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++G     S  +  KQ+H LI K G   +++  + L+ +Y+    ++DA  VFS M  
Sbjct: 444 VSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQN 503

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+V WN+++ G A +    EAV+LF +++ + + P+  TF+ +++       I  G Q+
Sbjct: 504 RDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVASTLASIFHGQQF 563

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALLSACQ 243
              +    +   P   +  A++ +  + GF+ E      S     G  V  + +++S   
Sbjct: 564 HAQIIKAGADSDPHISN--ALIDMYAKCGFIEEGRLLFES---TLGKDVICWNSMISTYA 618

Query: 244 VHGNREIAVR 253
            HG+ E A+ 
Sbjct: 619 QHGHAEEALH 628



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 120/235 (51%), Gaps = 12/235 (5%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           R D+++   +V+ ++  RN ++W A+I G+   G    AL+ F  M   G+  D F + S
Sbjct: 187 RIDAAM---SVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLAS 243

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
              A   +   + G+Q+H   ++   +S+  V N L+ +Y  C  +  A ++F SM+ R+
Sbjct: 244 AASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRN 303

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YF 186
           LVSW +++ G   +    EA+ +F Q+ +   +PD      +L++C     I +G Q + 
Sbjct: 304 LVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHA 363

Query: 187 YLMRNDASLEPPRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           ++++ D  LE   ++ Y   A++ +  +   L EA +   +++ +   S Y A++
Sbjct: 364 HVIKAD--LE---SDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAIS-YNAMI 412



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 6/190 (3%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-- 58
           L +  YS+     D + ++ S+ +RN +SW + I+ +   G  + AL  F+    AG   
Sbjct: 70  LLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFPSAGAAS 129

Query: 59  ----DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN 114
                 + F + S + A       + G+Q+H +  K+G D+NVFV   LV +YA  G I+
Sbjct: 130 PDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRID 189

Query: 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
            A  VF ++  R+ V+W +++ G +  G +  A++LF +M    ++PD        SAC 
Sbjct: 190 AAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACS 249

Query: 175 HAGFIDKGLQ 184
             GF++ G Q
Sbjct: 250 GLGFVEGGRQ 259



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 15/156 (9%)

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA     G   ++F+ N L+  Y+  G + DA ++F SM  R+LVSW S +   A HG  
Sbjct: 53  HARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGRE 112

Query: 145 REAVQLFEQMQKT-EIKPDG---TTFLV--VLSACCHAGFIDKGLQYFYLMRN---DASL 195
            +A+ LF          PDG     FL+   L AC  +     G Q   +      DA++
Sbjct: 113 DDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANV 172

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSM-SRNP 230
                   TA+V L  +AG ++ A S  +++ +RNP
Sbjct: 173 FVG-----TALVNLYAKAGRIDAAMSVFDALPARNP 203


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 177/301 (58%), Gaps = 5/301 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  + Q ++  +  +N +SW+A++ G+C  G  +  ++ F +M +    +D +  
Sbjct: 367 YGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEK----VDLYCF 422

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +I+     ++  ++GK++H    + G   +V V++ LV +YA CG I  A  +F  M  
Sbjct: 423 GTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPV 482

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+L++WNS++ G A +G   EA+++F QM K  IKPD  +F+ +L AC H G +D+G +Y
Sbjct: 483 RNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREY 542

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  ++    EHY+ +V LLGRAG L EAE  I +       S++ ALL AC   
Sbjct: 543 FISMTKDYGIKVG-IEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTC 601

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N EIA R AKRV++L P+    YVLL+NV KA   W+DA  IR LM +RG+ K PG SW
Sbjct: 602 TNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSW 661

Query: 306 V 306
           +
Sbjct: 662 I 662



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 116/229 (50%), Gaps = 3/229 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  ++ ISW ++I+G+  +G    +L+ F +M   G++ + FT+++++ A   +
Sbjct: 174 RKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSEL 233

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              K G+  H ++   G+DSN  + + L+ M+    A++DA ++F  + E D + W S++
Sbjct: 234 GDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSII 293

Query: 136 LGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
                + +  EA++ F  MQ+   + PDG TF  VL+AC + G + +G +    +     
Sbjct: 294 SALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGF 353

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
                 E  +++V + G+ G + E++   + M      S    L   CQ
Sbjct: 354 CGNVVVE--SSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQ 400



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 112/219 (51%), Gaps = 17/219 (7%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAI 72
           D + ++  +   + I W +II+        ++AL+ F  M R  G+  D FT  +++ A 
Sbjct: 273 DARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTAC 332

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           G +   K+GK++HA +   G+  NV V++ LV MY  CG++ ++ ++F  M  ++ VSW+
Sbjct: 333 GNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWS 392

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF--YLMR 190
           +LL G   +G  +  +Q+F +M+K ++   GT    +L  C     + +G +    Y+ +
Sbjct: 393 ALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGT----ILRTCAGLAAVRQGKEVHCQYIRK 448

Query: 191 N---DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
               D  +E       +A+V L  + G +  A++  + M
Sbjct: 449 GGWRDVIVE-------SALVDLYAKCGCIEYAQTIFDQM 480



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 34/243 (13%)

Query: 34  IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY 93
           I   C  G    AL+    +    I        S++     +  F  G Q+HA + K G 
Sbjct: 90  ILQLCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGL 149

Query: 94  DSNVFVQNRLVFMYAICGA-INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
           + + FV N L+ +Y   G    +  KVF  +  +D++SW S++ G    G    +++LF 
Sbjct: 150 EFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFW 209

Query: 153 QMQKTEIKPDGTTFLVVLSACC-----------HAGFIDKGLQYFYLM---------RND 192
           +M    ++P+  T   V+ AC            H   + +G    Y++         RN 
Sbjct: 210 KMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNC 269

Query: 193 A---------SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN----PGPSVYKALL 239
           A          L  P A  +T+I+  L R  F +EA  F  SM R+    P    +  +L
Sbjct: 270 ALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVL 329

Query: 240 SAC 242
           +AC
Sbjct: 330 TAC 332


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 176/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+  S  D + V+  +  R+ +SW A++ G+ + G   ++   F +M Q G++ + 
Sbjct: 389 INMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANK 448

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   ++ A       K GK++HA + K G  +++ V N L+ MY  CG++ DA +V   
Sbjct: 449 ITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEG 508

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD+V+WN+L+ G A +G   EA+Q FE M+  E++P+ TTF+ V+SAC     +++G
Sbjct: 509 MSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEG 568

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + F  MR D  + P   +HY  +V +L RAG L EAE  I +M   P  +++ ALL+AC
Sbjct: 569 RRQFASMRKDYGIVPTE-KHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAAC 627

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + HGN EI  ++A++ L L P +   YV LS +  A   W D   +R LM  RG++K+PG
Sbjct: 628 RAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPG 687

Query: 303 YSWV 306
            SW+
Sbjct: 688 RSWI 691



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S  D + V+ ++ +R+++SW  +   +   G  +++LK +  M Q G+    
Sbjct: 187 ISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSR 246

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  +++ A G ++  ++GKQ+HA I +  + S+V V   L  MY  CGA+ DA +VF  
Sbjct: 247 ITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFEC 306

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  RD+++WN+++ G    G   EA  +F +M K  + PD  T+L +LSAC   G +  G
Sbjct: 307 LPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACG 366

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
            +       D  +   R     A++ +  +AG + +A    + M +
Sbjct: 367 KEIHARAVKDGLVSDVR--FGNALINMYSKAGSMKDARQVFDRMPK 410



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 136/287 (47%), Gaps = 36/287 (12%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C S  + + ++     ++ +SWN +I+G+ + G G++A   F+ M+Q G++ D FT 
Sbjct: 89  YVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTF 148

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A    +    G+++H  + + G  +N  V N L+ MYA CG++ DA +VF +M  
Sbjct: 149 VSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMAS 208

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSW +L    A  GY++E+++ +  M +  ++P   T++ VLSAC     ++KG Q 
Sbjct: 209 RDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQI 268

Query: 186 FYLM-----RNDASLEPPRAEHY------------------------TAIVGLLGRAGFL 216
              +      +D  +     + Y                          ++G L  +G L
Sbjct: 269 HAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQL 328

Query: 217 NEAESFINSMSRN---PGPSVYKALLSACQVHG----NREIAVRSAK 256
            EA    + M +    P    Y A+LSAC   G     +EI  R+ K
Sbjct: 329 EEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVK 375



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 90/168 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +  D + V+  +  R+ I+WN +I G  + G  E+A   F  M +  +  D  T 
Sbjct: 291 YIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTY 350

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +I+ A     G   GK++HA   K G  S+V   N L+ MY+  G++ DA +VF  M +
Sbjct: 351 LAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPK 410

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           RD+VSW +L+ G A  G   E+   F++M +  ++ +  T++ VL AC
Sbjct: 411 RDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKAC 458



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 8/178 (4%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           + Q G  +D +    ++ +         GKQ+H  I + G   NV++ N L+ +Y  CG+
Sbjct: 35  LHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGS 94

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           +N+A ++F     + +VSWN ++ G AH G  +EA  LF  MQ+  ++PD  TF+ +LSA
Sbjct: 95  VNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSA 154

Query: 173 CCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT---AIVGLLGRAGFLNEAESFINSMS 227
           C     ++ G +    +     +E   A + T   A++ +  + G + +A    ++M+
Sbjct: 155 CSSPAALNWGREVHVRV-----MEAGLANNATVGNALISMYAKCGSVRDARRVFDAMA 207


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 173/291 (59%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++ ++ +  +N ++W  +I+G    G GEQALK F++M+  G + + +     + A  V+
Sbjct: 379 KSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVL 438

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G+Q+HA I  +G+DS + V N ++ MYA CG +  A  +F +M   D VSWNS++
Sbjct: 439 GALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMI 498

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
                HG+  +A++L+EQM K  I PD  TFL VLSAC HAG +++G +YF  M  +  +
Sbjct: 499 AALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGI 558

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
            P   +HY  ++ L  RAG  ++A++ I+SM       +++ALL+ C+ HGN ++ + +A
Sbjct: 559 APGE-DHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAA 617

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++  L P     YVLLSN+  +   W+D    R LM +RG++K+P  SW 
Sbjct: 618 EKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWT 668



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 148/339 (43%), Gaps = 46/339 (13%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y R       + +  ++  +  I+WNA+I+G+ + G  E AL  F +MR  G+ +D 
Sbjct: 230 ITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDE 289

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFK--IGYDSNVF--VQNRLVFMYAICGAINDANK 118
            T TS++ A      F  GKQ+HA I K  +  D +    V N L+ +Y   G ++ A K
Sbjct: 290 STYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARK 349

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           +F  M  +D+++WN+LL G  + G   EA   F QM +  +     T+ V++S     GF
Sbjct: 350 IFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNL----LTWTVMISGLAQNGF 405

Query: 179 IDKGLQYFYLMRND-------------------ASLEPPRAEHY--------------TA 205
            ++ L+ F  M+ D                    +LE  R  H                A
Sbjct: 406 GEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNA 465

Query: 206 IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWP 263
           ++ +  R G +  A +   +M     P  + ++++A   HG+   A+   +++L   + P
Sbjct: 466 MITMYARCGIVEAARTMFLTMPF-VDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILP 524

Query: 264 NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +      +LS  S A    +      +++ N GI   PG
Sbjct: 525 DRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGI--APG 561



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 44/217 (20%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI-SGFKEGKQ 83
           R+ + +NA+I G+ ++  G  A++ F  MR A    D FT  S++ A  +I    ++  Q
Sbjct: 110 RDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQ 169

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAIC--------------------------------- 110
           MH  + K G +    V N L+ +Y  C                                 
Sbjct: 170 MHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTL 229

Query: 111 -------GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG 163
                  G +  A ++  +M E+  ++WN+++ G  HHG   +A+ LF +M+   ++ D 
Sbjct: 230 ITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDE 289

Query: 164 TTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPR 199
           +T+  V+SAC   GF   G Q + Y+++N+  L P R
Sbjct: 290 STYTSVISACADGGFFLLGKQVHAYILKNE--LNPDR 324



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 2/168 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+RC      + ++ ++   + +SWN++IA     G G +A++ + +M + GI  D 
Sbjct: 467 ITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDR 526

Query: 63  FTITSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T  +++ A       +EG +  ++++   G         R++ ++   G  +DA  V  
Sbjct: 527 RTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVID 586

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
           SM  E     W +LL GC  HG     ++  E++ K   + DGT  L+
Sbjct: 587 SMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLL 634



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 42/198 (21%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVF--SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           +V  +  L+  Y+  G +  A ++F  + +D RD V +N+++ G +H      A++LF  
Sbjct: 78  DVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRA 137

Query: 154 MQKTEIKPDGTTFLVVLSACC------------HAGFIDKGLQYFYLMRND--------- 192
           M+    +PD  TF  VLSA              H   +  G++ F  + N          
Sbjct: 138 MRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCA 197

Query: 193 -----------ASLE------PPRAEH-YTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
                      AS        P R E  +T ++    R G L  A   +++M+  PG + 
Sbjct: 198 SSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIA- 256

Query: 235 YKALLSACQVHGNREIAV 252
           + A++S    HG  E A+
Sbjct: 257 WNAMISGYLHHGLFEDAL 274


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 112/292 (38%), Positives = 173/292 (59%), Gaps = 2/292 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + +++S++  + ++W A+I G+   G    A++ F  M   G   + FT+ +++ A   +
Sbjct: 328 RQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSV 387

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-RDLVSWNSL 134
           +    GKQ+HA   + G   +  V N L  MYA  G+IN A KVF+ + + RD VSW S+
Sbjct: 388 TSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSM 447

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           ++  A HG   EA++LFEQM    IKPD  T++ VLSAC H G +++G  YF LM+N   
Sbjct: 448 IMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHK 507

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           ++P  + HY  +V L GRAG L EA  F+ +M   P    + +LLS+C+V+ N ++A  +
Sbjct: 508 IDPTLS-HYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVA 566

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           A+R+L + PN+   Y  L+NV  +   WDDA  IR LM  RG++K+ G SWV
Sbjct: 567 AERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWV 618



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 35/214 (16%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
             V+  +  R+ +SW  II G+  +G  E A+K F +M +  +    FT+T+++ +    
Sbjct: 61  HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM------------ 123
                GK++H+ + K+G  + V V N L+ MYA  G +  A  VF  M            
Sbjct: 121 GSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI 180

Query: 124 -------------------DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK-TEIKPDG 163
                               ERD+VSWNS++ GC  HG+  EA+Q F  + K T +KPD 
Sbjct: 181 SLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDR 240

Query: 164 TTFLVVLSACCHAGFIDKGLQ-YFYLMRN--DAS 194
            +    LSAC +   +  G Q + Y++R   DAS
Sbjct: 241 FSLASALSACANLEKLSFGKQIHGYIVRTMFDAS 274



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 125/272 (45%), Gaps = 38/272 (13%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSE-MRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           R+ +SWN++IAG    G   +AL+ FS  ++   +  D F++ S + A   +     GKQ
Sbjct: 202 RDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQ 261

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGA------------------------------- 112
           +H  I +  +D++  V N L+ MYA  G                                
Sbjct: 262 IHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKL 321

Query: 113 --INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
             I  A ++F+S+ + D+V+W ++++G   +G + +A+++F+ M     +P+  T   +L
Sbjct: 322 GDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAML 381

Query: 171 SACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
           SA      ++ G Q +   +R+  +L P       A+  +  +AG +N A    N + +N
Sbjct: 382 SASSSVTSLNHGKQIHASAIRSGEALSPSVG---NALTTMYAKAGSINGARKVFNLLRQN 438

Query: 230 PGPSVYKALLSACQVHGNREIAVRSAKRVLDL 261
                + +++ A   HG  E A+   +++L L
Sbjct: 439 RDTVSWTSMIMALAQHGLGEEAIELFEQMLTL 470



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%)

Query: 97  VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
            F  N ++  YA  G +  A++VF  +  RD VSW ++++G    G   +A+++F  M K
Sbjct: 41  TFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVK 100

Query: 157 TEIKPDGTTFLVVLSACCHAG 177
            ++ P   T   VL++C   G
Sbjct: 101 DKVLPTQFTLTNVLASCAATG 121



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 5/165 (3%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           + K+G   +V++ N L+ +YA  G   DA+ +F+ M  +   SWN++L G A  G   +A
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP-RAEHYTAI 206
            Q+F+ +       D  ++  ++      G  +  ++ F  M  D  L       +  A 
Sbjct: 61  HQVFDLIPVR----DSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLAS 116

Query: 207 VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
               G  G   +  SF+  +  +    V  +LL+     G+ ++A
Sbjct: 117 CAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMA 161


>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
          Length = 569

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 122/310 (39%), Positives = 173/310 (55%), Gaps = 10/310 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC      + ++  +  RN +SW  +IAG   +G  +QAL  F EMR+AG+ +D   +
Sbjct: 211 YVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVAL 270

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSN----VFVQNRLVFMYAICGAINDANKVFS 121
            + + A   +   K G  +H+ I +  +  N    V + N L+ MYA CG I+ A KVF 
Sbjct: 271 VAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFI 330

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK---TEIKPDGTTFLVVLSACCHAGF 178
            M +R  +SW S++ G A  G++ EA+ +F+ MQ+    E +PDG TF+ VL AC HAGF
Sbjct: 331 GMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGF 390

Query: 179 IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
           +D+G  +F  M     +  PR EHY  +V LL RAGFL+EA     SM   P  +V+ AL
Sbjct: 391 VDQGRHFFECMNKKWGI-VPRIEHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGAL 449

Query: 239 LSACQVHGNREIAVRSAKR-VLDLWPNDPAIY-VLLSNVSKATDCWDDAGDIRTLMYNRG 296
           L  C++H N E+A   A++ VL+L P+  A Y VLLSNV      W D   +R  M   G
Sbjct: 450 LGGCRIHKNAELASHVAQKLVLELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIG 509

Query: 297 IRKKPGYSWV 306
           +RK  G SWV
Sbjct: 510 VRKPAGRSWV 519



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 114/254 (44%), Gaps = 37/254 (14%)

Query: 13  LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           L+   V+  +   +   WN +I G     +  + ++ ++ M +A  + + FT + ++G  
Sbjct: 83  LNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGC 142

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI----------------------- 109
                 +EG+Q+H  +   GY +NVFV+  LV +YAI                       
Sbjct: 143 ARSXLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIV 202

Query: 110 -----------CGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
                      CG ++ A ++F  M ER++VSW +++ GCA  G  ++A+ LF +M++  
Sbjct: 203 SWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAG 262

Query: 159 IKPDGTTFLVVLSACCHAGFIDKG--LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFL 216
           +K D    +  LSAC   G +  G  +  +   R  A  +P       +++ +    G +
Sbjct: 263 VKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVI 322

Query: 217 NEA-ESFINSMSRN 229
           ++A + FI    R+
Sbjct: 323 DKAYKVFIGMQQRS 336



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 53/107 (49%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K+ KQ+H  I   G+    F+  +L+  Y   G + +A+KVF  ++      WN ++ G
Sbjct: 47  IKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRG 106

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +      + V+L+ +M + E +P+  T+  ++  C  +  + +G Q
Sbjct: 107 HSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQ 153


>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 700

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 116/299 (38%), Positives = 176/299 (58%), Gaps = 1/299 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C        ++  +R R+ ISW+ II G+   G GE+A K FS MRQ+G     F +
Sbjct: 349 YSTCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFSWMRQSGPKPTDFAL 408

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++   G ++  + G+Q+HAL F  G + N  V++ L+ MY+ CG I +A+K+F   D 
Sbjct: 409 ASLLSVSGNMAVLEGGRQVHALAFCFGLEQNSTVRSTLINMYSKCGNIKEASKIFEETDR 468

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VS  +++ G A HG S+EA+ LFE+  K    PD  TF+ VL+AC H+G +D G  Y
Sbjct: 469 DDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFSPDSVTFISVLTACTHSGQLDLGFHY 528

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM+   ++ P + EHY  +V LL RAG L+EAE  I+ MS      V+  LL AC+  
Sbjct: 529 FNLMQEKYNMRPAK-EHYGCMVDLLCRAGRLSEAEKMIDEMSWKKDDVVWTTLLIACKAK 587

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           G+ E   R+A+R+L+L P      V L+N+  +T   ++A ++R  M  +G+ K+PG+S
Sbjct: 588 GDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKEPGWS 646



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 31/263 (11%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+S +  RN ++W AII G  + G  ++ L  FSEM  +    D FT    + A   +  
Sbjct: 159 VFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQ 218

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K GKQ+H  +   G+D+ V+V N L  MY  CG + D   +F +M ERD+VSW SL++ 
Sbjct: 219 VKYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIVA 278

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY----FYLMRNDA 193
               G+  +AV+ F +M+ +++ P+  TF  + SAC     +  G Q     F L  ND+
Sbjct: 279 YNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLGLNDS 338

Query: 194 -SLEPPRAEHY------------------------TAIVGLLGRAGFLNEAESFINSMSR 228
            S+     + Y                        + I+G   +AGF  EA  + + M +
Sbjct: 339 LSVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFSWMRQ 398

Query: 229 N-PGPSVYKALLSACQVHGNREI 250
           + P P+ + AL S   V GN  +
Sbjct: 399 SGPKPTDF-ALASLLSVSGNMAV 420



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 125/252 (49%), Gaps = 13/252 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C    D   ++ ++  R+ +SW ++I  +  +G  E+A++ F +MR + +  +  T 
Sbjct: 248 YTECGEMRDGLCLFENMSERDVVSWTSLIVAYNRIGHEEKAVETFIKMRNSQVPPNEQTF 307

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            ++  A   +S    G+Q+H  +F +G + ++ V N ++ MY+ CG ++ A+ +F  M  
Sbjct: 308 ATMFSACASLSRLVWGEQLHCNVFSLGLNDSLSVSNSMMKMYSTCGKLDSASVLFQGMRC 367

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD++SW++++ G +  G+  EA + F  M+++  KP       +LS   +   ++ G Q 
Sbjct: 368 RDIISWSTIIGGYSQAGFGEEAFKYFSWMRQSGPKPTDFALASLLSVSGNMAVLEGGRQV 427

Query: 186 FYL-----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
             L     +  ++++        + ++ +  + G + EA        R+   S+  A+++
Sbjct: 428 HALAFCFGLEQNSTVR-------STLINMYSKCGNIKEASKIFEETDRDDIVSL-TAMIN 479

Query: 241 ACQVHGNREIAV 252
               HG  + A+
Sbjct: 480 GYAEHGKSKEAI 491



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 2/160 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR--QAGIDIDYFTITSIVGAIG 73
           + V+  +  R+ +SW AII G+    + ++A+  FS MR     +  D   ++ ++ A G
Sbjct: 54  RQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSVVLKACG 113

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
             S    G+ +HA   K    S+VFV + L+ MY   G I  + +VFS M  R+ V+W +
Sbjct: 114 QSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSEMPFRNAVTWTA 173

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           ++ G  H G  +E +  F +M  +E   D  TF + L AC
Sbjct: 174 IITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKAC 213



 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE--IKPDGTTFLV 168
           G +  A +VF  M  RD+VSW +++ G      S EA+ LF  M+  +  + PD +   V
Sbjct: 48  GNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSV 107

Query: 169 VLSACCHAGFIDKG 182
           VL AC  +  I  G
Sbjct: 108 VLKACGQSSNIAYG 121


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 113/299 (37%), Positives = 172/299 (57%), Gaps = 1/299 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C S  D + V+  +  RN +SWNA+I G+ +     + +  F EM+ AG      T+
Sbjct: 187 YGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTM 246

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   +    +G+ +   I       NVFV   L+ MYA CG +++A K+F +M  
Sbjct: 247 VGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRV 306

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++ +WN L+ G A +G    A+Q F +M   + KPD  TFL VL ACCH G +++G  Y
Sbjct: 307 KNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTY 366

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+ +  L  PR EHY  +V LLGRAGFL+EA+  I +MS  P P +++ LL AC++H
Sbjct: 367 FTSMKEEFGLR-PRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIH 425

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           GN ++   + K++L+L PN+   YVLL+N+      WD  G++R +M  R +RK PG S
Sbjct: 426 GNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCS 484



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 123/230 (53%), Gaps = 5/230 (2%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           N++I  + +      ++  +++M + GI  D  T  +++ ++  +   + GK +H  I +
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
           +G++SNV+V   LV MY  C +++DA +VF  + +R++VSWN+L+ G  H+   R+ + +
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY-FYLMRNDASLEPPRAEHYTAIVGL 209
           F +MQ    KP   T + VL AC H G +++G     Y+  N   L        TA++ +
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVG---TALIDM 287

Query: 210 LGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL 259
             + G ++EAE    +M R      +  L+S   ++G  E A+++  R++
Sbjct: 288 YAKCGVVDEAEKIFKAM-RVKNVYTWNVLISGYAMNGRGESALQAFSRMI 336


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 184/302 (60%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C    D   V+ S+  R+ ++W+++ AG+      EQAL  F +  + G+  D F 
Sbjct: 209 VYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFL 268

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++S++ A   ++   EGKQ++AL+ K G+ SN+FV + L+ MYA CG I ++ KVF  ++
Sbjct: 269 MSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE 328

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +R++V WN+++ G + H  S E + LFE+MQ+  + P+  TF+ VLSAC H G + KG +
Sbjct: 329 KRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQK 388

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF LM  +  L  P   HY+ +V  L RAG + EA   I+ +  N   S++ +LL++C+ 
Sbjct: 389 YFDLMTKEHHL-APNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRT 447

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN E+A  +AK++ D+ P++   Y+LLSN+  A   WD+   +R L+    ++K+ G S
Sbjct: 448 HGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKS 507

Query: 305 WV 306
           W+
Sbjct: 508 WI 509



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 130/272 (47%), Gaps = 9/272 (3%)

Query: 6   YSRCDSSLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS+C  S+DF + V+  + +R+ +SWN +I      G   +AL    +M++ G     FT
Sbjct: 109 YSKC-GSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFT 167

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I+S++ A        E + +HA   K   D NVFV   L+ +YA CG + DA  VF SM 
Sbjct: 168 ISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP 227

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +R +V+W+S+  G   +    +A+ LF +  +T +K D      V+ AC     + +G Q
Sbjct: 228 DRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQ 287

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSACQ 243
              L+              ++++ +  + G + E+ + F +   RN    ++ A++S   
Sbjct: 288 VNALLSKSGFCSNIFVA--SSLIDMYAKCGGIEESYKVFRDVEKRN--VVLWNAMISGLS 343

Query: 244 VHGNR-EIAVRSAK-RVLDLWPNDPAIYVLLS 273
            H    E+ +   K + + L PND     +LS
Sbjct: 344 RHARSLEVMILFEKMQQMGLSPNDVTFVSVLS 375



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 7/156 (4%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           +GK  HA I  +G  +++   N L+ MY+ CG+++ A +VF  M  R LVSWN+++    
Sbjct: 82  QGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLT 141

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-CHAGFIDKGLQYFYLMRNDASLEPP 198
            +G   EA+ L  QMQ+        T   VL AC       +  L + + ++    L   
Sbjct: 142 QNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVF 201

Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
            A   TA++ +  + G + +A     SM   P  SV
Sbjct: 202 VA---TALLDVYAKCGLMKDAVCVFESM---PDRSV 231


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  221 bits (563), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 177/301 (58%), Gaps = 5/301 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  + Q ++  +  +N +SW+A++ G+C  G  +  ++ F +M +    +D +  
Sbjct: 308 YGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEK----VDLYCF 363

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +I+     ++  ++GK++H    + G   +V V++ LV +YA CG I  A  +F  M  
Sbjct: 364 GTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPV 423

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+L++WNS++ G A +G   EA+++F QM K  IKPD  +F+ +L AC H G +D+G +Y
Sbjct: 424 RNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREY 483

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  ++    EHY+ +V LLGRAG L EAE  I +       S++ ALL AC   
Sbjct: 484 FISMTKDYGIKVG-IEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTC 542

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N EIA R AKRV++L P+    YVLL+NV KA   W+DA  IR LM +RG+ K PG SW
Sbjct: 543 TNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSW 602

Query: 306 V 306
           +
Sbjct: 603 I 603



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 116/229 (50%), Gaps = 3/229 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  ++ ISW ++I+G+  +G    +L+ F +M   G++ + FT+++++ A   +
Sbjct: 115 RKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSEL 174

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              K G+  H ++   G+DSN  + + L+ M+    A++DA ++F  + E D + W S++
Sbjct: 175 GDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSII 234

Query: 136 LGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
                + +  EA++ F  MQ+   + PDG TF  VL+AC + G + +G +    +     
Sbjct: 235 SALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGF 294

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
                 E  +++V + G+ G + E++   + M      S    L   CQ
Sbjct: 295 CGNVVVE--SSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQ 341



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 107/214 (50%), Gaps = 7/214 (3%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAI 72
           D + ++  +   + I W +II+        ++AL+ F  M R  G+  D FT  +++ A 
Sbjct: 214 DARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTAC 273

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           G +   K+GK++HA +   G+  NV V++ LV MY  CG++ ++ ++F  M  ++ VSW+
Sbjct: 274 GNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWS 333

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           +LL G   +G  +  +Q+F +M+K ++   GT    +L  C     + +G +        
Sbjct: 334 ALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGT----ILRTCAGLAAVRQGKEVHCQYIRK 389

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
                   E  +A+V L  + G +  A++  + M
Sbjct: 390 GGWRDVIVE--SALVDLYAKCGCIEYAQTIFDQM 421



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 34/243 (13%)

Query: 34  IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY 93
           I   C  G    AL+    +    I        S++     +  F  G Q+HA + K G 
Sbjct: 31  ILQLCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGL 90

Query: 94  DSNVFVQNRLVFMYAICGA-INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
           + + FV N L+ +Y   G    +  KVF  +  +D++SW S++ G    G    +++LF 
Sbjct: 91  EFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFW 150

Query: 153 QMQKTEIKPDGTTFLVVLSACC-----------HAGFIDKGLQYFYLM---------RND 192
           +M    ++P+  T   V+ AC            H   + +G    Y++         RN 
Sbjct: 151 KMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNC 210

Query: 193 A---------SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN----PGPSVYKALL 239
           A          L  P A  +T+I+  L R  F +EA  F  SM R+    P    +  +L
Sbjct: 211 ALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVL 270

Query: 240 SAC 242
           +AC
Sbjct: 271 TAC 273


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 180/307 (58%), Gaps = 7/307 (2%)

Query: 6   YSRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDID 61
           YS+C S    ++++ S+  R RN ++W  +I G+   G    ALK FSEM  +   +  +
Sbjct: 452 YSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPN 511

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIG-YDSNV-FVQNRLVFMYAICGAINDANKV 119
            +TI+ I+ A   ++  + GKQ+HA + +   Y+ +V FV N L+ MY+ CG ++ A  V
Sbjct: 512 AYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNV 571

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F SM +R+ VSW S++ G   HG  +EA+ +F++MQK    PD  +FLV+L AC H+G +
Sbjct: 572 FDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMV 631

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           D+GL YF +MR D  +    AEHY  ++ LL R G L++A   I  M   P   ++ ALL
Sbjct: 632 DQGLNYFDIMRRDYDVV-ASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALL 690

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           SAC+VH N E+A  +  +++++   +   Y L+SN+      W D   IR LM   GI+K
Sbjct: 691 SACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKK 750

Query: 300 KPGYSWV 306
           +PG SWV
Sbjct: 751 RPGCSWV 757



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 10/204 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTR---NQISWNAIIAGFCNLGSGEQALKCFSEM------ 53
           +  YSRC S  D   V+  +  +   + ISWN+I+A      +   AL+ FSEM      
Sbjct: 191 VAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHE 250

Query: 54  RQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113
           +      D  +I +I+ A   +    + K++H+   + G  ++ FV N L+  YA CG++
Sbjct: 251 KATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSM 310

Query: 114 NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           NDA KVF+ M+ +D+VSWN+++ G    G    A +LFE M+K  I  D  T+  V++  
Sbjct: 311 NDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGY 370

Query: 174 CHAGFIDKGLQYFYLMRNDASLEP 197
              G   + L  F  M  D S EP
Sbjct: 371 AQRGCSQEALDAFQQMILDGS-EP 393



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 129/283 (45%), Gaps = 33/283 (11%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F+N+       + I+W+A+IAG+   G  ++AL  F +M   G + +  TI S++ A   
Sbjct: 348 FENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACAS 407

Query: 75  ISGFKEGKQMHALIFK------------IGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +    +G ++HA   K             G   ++ V N L+ MY+ C +   A  +F S
Sbjct: 408 LGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDS 467

Query: 123 MD--ERDLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGF 178
           +   ER++V+W  ++ G A +G S +A+++F +M  +   + P+  T   +L AC H   
Sbjct: 468 IPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAA 527

Query: 179 IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
           +  G Q    +      EP        ++ +  + G ++ A +  +SM +    S + ++
Sbjct: 528 LRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVS-WTSM 586

Query: 239 LSACQVHGNREIAVRSAKRVLDLW---------PNDPAIYVLL 272
           +S   +HG         K  LD++         P+D +  VLL
Sbjct: 587 MSGYGMHGR-------GKEALDIFDKMQKAGFVPDDISFLVLL 622



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 13/234 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           + +Y  C ++ D  +V   V     + WN ++      G  ++A+     M +AG   D+
Sbjct: 90  VASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDH 149

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+   + A G +  +  G+ +H LI   G++SNVFV N LV MY+ CG++ DA+ VF  
Sbjct: 150 FTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDE 209

Query: 123 MDER---DLVSWNSLLLGCAHHGYSREAVQLFEQM------QKTEIKPDGTTFLVVLSAC 173
           +  +   D++SWNS++         R A++LF +M      + T  + D  + + +L AC
Sbjct: 210 ITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPAC 269

Query: 174 CHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
                + +  + + Y +RN    +   A    A++    + G +N+A    N M
Sbjct: 270 ASLKALPQIKEIHSYAIRNGTFAD---AFVCNALIDTYAKCGSMNDAVKVFNVM 320


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 171/291 (58%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  +N ++WN++IAG+      E  LK F  M ++ +  +  +++S++     +
Sbjct: 249 ERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNL 308

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S    G+QMH L+ K     +      L+ MY  CG ++ A K+F  M  +D++SWN+++
Sbjct: 309 SALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMI 368

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG  R+A+ LF++M+   +KPD  TF+ V+ AC HAGF+D G+QYF  M+ +  +
Sbjct: 369 SGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGI 428

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           E  +  HYT ++ LLGRAG L+EA S I  M   P  ++Y  LL AC++H N ++A  +A
Sbjct: 429 E-AKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAA 487

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +L+L P     YV L+N+  AT+ WD    +R +M    + K PGYSW+
Sbjct: 488 RNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWI 538



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 21/245 (8%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           ++ +  ++  SWN +I+GF   G  ++A   FS M +           + V    +ISG+
Sbjct: 159 FNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPE----------KNGVSWSAMISGY 208

Query: 79  KEGKQMHA---LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
            E   + A   L   +G  S V V+  ++  Y   G +  A ++F  M  ++LV+WNS++
Sbjct: 209 VEHGDLEAAEELYKNVGMKS-VVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMI 267

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G   +  + + +++F+ M ++ ++P+  +   VL  C +   +  G Q   L+      
Sbjct: 268 AGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLS 327

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           +   A   T+++ +  + G L+ A      M R    S + A++S    HG    A R A
Sbjct: 328 KDTTA--CTSLISMYCKCGDLDSAWKLFLEMPRKDVIS-WNAMISGYAQHG----AGRKA 380

Query: 256 KRVLD 260
             + D
Sbjct: 381 LHLFD 385



 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 37/69 (53%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C        ++  +  ++ ISWNA+I+G+   G+G +AL  F +MR   +  D+
Sbjct: 337 ISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDW 396

Query: 63  FTITSIVGA 71
            T  +++ A
Sbjct: 397 ITFVAVILA 405



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 24/159 (15%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG----KQ 83
           +S N  IA F      E A   F +M          ++ + V    ++SG+ +     K+
Sbjct: 74  VSLNKTIASFVRACDLESARNVFEKM----------SVRTTVTWNTMLSGYTKVAGKVKE 123

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
            H L  KI    +V   N ++  Y     +  A   F+ M  +D+ SWN+L+ G A +G 
Sbjct: 124 AHELFDKIPEPDSV-SYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQ 182

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            ++A  LF  M +     +G ++  ++S     G+++ G
Sbjct: 183 MQKAFDLFSVMPEK----NGVSWSAMIS-----GYVEHG 212


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 177/303 (58%), Gaps = 3/303 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFT 64
           Y++     +   ++  +  +N  SW A+I+GF   G G +A   F+EMR+  +DI D   
Sbjct: 181 YAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLV 240

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++SIVGA   ++    G+Q+H L+  +G+DS VF+ N L+ MYA C  +  A  +FS M 
Sbjct: 241 LSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMR 300

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD+VSW SL++G A HG + +A+ L++ M    +KP+  TF+ ++ AC H GF++KG +
Sbjct: 301 HRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRE 360

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M  D  + P   +HYT ++ LLGR+G L+EAE+ I++M   P    + ALLSAC+ 
Sbjct: 361 LFQSMTKDYGIRPS-LQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKR 419

Query: 245 HGNREIAVRSAKRVLDLWP-NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
            G  ++ +R A  ++  +   DP+ Y+LLSN+  +   W    + R  +    +RK PG+
Sbjct: 420 QGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGH 479

Query: 304 SWV 306
           S V
Sbjct: 480 SSV 482



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGF--CNLGSGEQALKCFSEMRQAGIDIDY 62
            Y +C ++     V+  +  R+ I+W +++      NL SG+      S    +G+  D 
Sbjct: 47  VYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANL-SGKTLSVFSSVGSSSGLRPDD 105

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F  +++V A   +     G+Q+H       Y ++  V++ LV MYA CG +N A  VF S
Sbjct: 106 FVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDS 165

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLF 151
           +  ++ +SW +++ G A  G   EA++LF
Sbjct: 166 IRVKNTISWTAMVSGYAKSGRKEEALELF 194



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 8/175 (4%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
            K +HA I K+G      + N LV +Y  CGA + A +VF  M  RD ++W S+L     
Sbjct: 22  AKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQ 81

Query: 141 HGYSREAV-QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY--FYLMRNDASLEP 197
              S + +         + ++PD   F  ++ AC + G ID G Q    +++   A+ E 
Sbjct: 82  ANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEV 141

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            +    +++V +  + G LN A++  +S+ R      + A++S     G +E A+
Sbjct: 142 VK----SSLVDMYAKCGLLNSAKAVFDSI-RVKNTISWTAMVSGYAKSGRKEEAL 191


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 107/291 (36%), Positives = 170/291 (58%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q+++  +  RN I+W  ++ G+      E AL+ F+ M   GI  +  T    V A   +
Sbjct: 273 QDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNL 332

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +G  EG+Q+H +I K  +  + F+++ L+ +YA CG I  A KVF    E+D++SWN ++
Sbjct: 333 AGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMI 392

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
              AHHG   EA+ L+E+MQ+   KP+  T++ +LSAC H+G +D+GL+ F  M  D S+
Sbjct: 393 AAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSI 452

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
              R EHYT ++ L  RAG L +A+  I+ +   P  +V+ ALL  C  HGN  I   +A
Sbjct: 453 -AVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAA 511

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +L+  PN+   Y LL N+  +   W +A  IR+ M +RG++K+PG SW+
Sbjct: 512 RNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWI 562



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 15/169 (8%)

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           D D  + T++V A        + +   AL  +     NV     L+  YA  G +++A  
Sbjct: 63  DRDVVSWTALVAAYARQGMLHDAR---ALFDRPDARRNVVTWTALLSGYARAGRVDEAEA 119

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           +F  M ER++VSWN++L      G  R+A  LF+ M       D  ++ ++L+A   +G 
Sbjct: 120 LFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVR----DAGSWNILLAALVRSGN 175

Query: 179 IDKGLQYFYLMRNDASLEPPR-AEHYTAIVGLLGRAGFLNEAESFINSM 226
           +DK  + F  M       P R    +T +V  + R+G ++EA +  + M
Sbjct: 176 MDKARKLFDRM-------PERNVMAWTTMVAGIARSGSVDEARALFDGM 217



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 80/177 (45%), Gaps = 14/177 (7%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN ++W  ++AG    GS ++A   F  M +           ++V    +I
Sbjct: 180 RKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPE----------RNVVSWNAMI 229

Query: 76  SGFKEGKQM---HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           SG+    ++   H L  K+    ++   N ++  +     +  A  +F  M  R++++W 
Sbjct: 230 SGYARNHRIDEAHDLFMKMPT-RDIASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWT 288

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           +++ G      S  A+Q+F  M    I+P+  TFL  + AC +   + +G Q   ++
Sbjct: 289 TMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMI 345



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 12/156 (7%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDIDYF 63
           Y+R     + + ++  +  RN +SWN ++  + + G    A   F  M  R AG      
Sbjct: 108 YARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGS----- 162

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
              +I+ A  V SG  +  +    +F    + NV     +V   A  G++++A  +F  M
Sbjct: 163 --WNILLAALVRSGNMDKARK---LFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGM 217

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
            ER++VSWN+++ G A +    EA  LF +M   +I
Sbjct: 218 PERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDI 253



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 20/166 (12%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
           NR V   A  G ++DA ++F    +RD+VSW +L+   A  G   +A  LF+   + + +
Sbjct: 39  NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFD---RPDAR 95

Query: 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDASLEPPRAEHYTAIVGLLGRAGFLNE 218
            +  T+  +LS    AG +D+    F  M  RN  S      E YT+       AG + +
Sbjct: 96  RNVVTWTALLSGYARAGRVDEAEALFQRMPERNVVSWN-TMLEAYTS-------AGRVRD 147

Query: 219 AESFINSMS-RNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263
           A +  + M  R+ G   +  LL+A    GN +     A+++ D  P
Sbjct: 148 AWTLFDGMPVRDAGS--WNILLAALVRSGNMD----KARKLFDRMP 187



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---DIDY 62
           Y++C      + V+   + ++ ISWN +IA + + G G +A+  + +M++ G    D+ Y
Sbjct: 364 YAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTY 423

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR----LVFMYAICGAINDANK 118
             + S     G++    EG ++   + K   D ++ V++     L+ + +  G + DA +
Sbjct: 424 VGLLSACSHSGLVD---EGLRIFEYMVK---DRSIAVRDEHYTCLIDLCSRAGRLGDAKR 477

Query: 119 VFSSMD-ERDLVSWNSLLLGCAHHG 142
           +   +  E     WN+LL GC  HG
Sbjct: 478 LIHFLKVEPSSTVWNALLGGCNSHG 502


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 175/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C      + V+  ++ +N +SW A++ G+   G   +A+K F +M+++GID D+
Sbjct: 309 IDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDH 368

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T+   + A   IS  +EG Q H      G    + V N LV +Y  CG I+D+ ++F+ 
Sbjct: 369 YTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNE 428

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+ RD VSW +++   A  G + EA+QLF++M +  +KPDG T   V+SAC  AG ++KG
Sbjct: 429 MNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKG 488

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF LM N+  + P    HY+ ++ L  R+G + EA  FIN M   P    +  LLSAC
Sbjct: 489 QRYFELMINEYGIVPSNG-HYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSAC 547

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +  GN EI   +A+ +++L P+ PA Y LLS++  +   WD    +R  M  + +RK+PG
Sbjct: 548 RNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPG 607

Query: 303 YSWV 306
            SW+
Sbjct: 608 QSWI 611



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 139/260 (53%), Gaps = 13/260 (5%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           ++ +SW+A+I G    G  ++A++CF EM+  G+ +D +   S++ A G +    +G+Q+
Sbjct: 230 KDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQI 289

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA I +     +++V + L+ MY  C  ++ A  VF  M ++++VSW ++++G    G +
Sbjct: 290 HACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRA 349

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY- 203
            EAV++F  MQ++ I PD  T    +SAC +   +++G Q F+     A L      HY 
Sbjct: 350 GEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQ-FHGKAITAGL-----IHYI 403

Query: 204 ---TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV-- 258
               ++V L G+ G ++++    N M+     S + A++SA    G    A++   ++  
Sbjct: 404 TVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVS-WTAMVSAYAQFGRAVEAIQLFDKMVQ 462

Query: 259 LDLWPNDPAIYVLLSNVSKA 278
           L L P+   +  ++S  S+A
Sbjct: 463 LGLKPDGVTLTGVISACSRA 482



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 100/213 (46%), Gaps = 31/213 (14%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           +L YS+     + +  +  +  R+ ++WN +I G+   G    A+K ++ M +    ++ 
Sbjct: 76  LLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLT 135

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             T+ +++           GKQ+H  + K+G++S + V + L+ MY+  G I+DA KVF 
Sbjct: 136 RVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFY 195

Query: 122 SMD------------------------------ERDLVSWNSLLLGCAHHGYSREAVQLF 151
            +D                              E+D VSW++++ G A +G  +EA++ F
Sbjct: 196 GLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECF 255

Query: 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +M+   +K D   F  VL AC   G I+ G Q
Sbjct: 256 REMKIEGLKMDQYPFGSVLPACGGLGAINDGRQ 288



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 4/125 (3%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           K +H  I +       F+ N +V  YA+  +   A +VF  + + +L SWN+LLL  +  
Sbjct: 23  KMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKS 82

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAE 201
           G+  E  + FE++       DG T+ V++     +G +   ++ +  M  D S    R  
Sbjct: 83  GHLSEMERTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVT 138

Query: 202 HYTAI 206
             T +
Sbjct: 139 LMTML 143


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 182/301 (60%), Gaps = 1/301 (0%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            YS+   +   + V+SS+  +N ++WN++I+ +   G  E ++    ++ Q G  +D  +I
Sbjct: 896  YSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSI 955

Query: 66   TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            T+++ A+  ++   +GK +HA   ++   S++ V+N L+ MY  CG +  A  +F +M  
Sbjct: 956  TTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPR 1015

Query: 126  RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            R+LV+WNS++ G   HG   EAV+LF++M+++E  PD  TFL ++++C H+G +++GL  
Sbjct: 1016 RNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNL 1075

Query: 186  FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            F LMR +  +E PR EHY ++V LLGRAG L++A SFI  M  +   SV+  LL AC+ H
Sbjct: 1076 FQLMRIEYGVE-PRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAH 1134

Query: 246  GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
             N E+    A  +L + P   + YV L N+    + WD A ++R  M  RG++K PG SW
Sbjct: 1135 RNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSW 1194

Query: 306  V 306
            +
Sbjct: 1195 I 1195



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 129/256 (50%), Gaps = 7/256 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  S  D + V+  V  +     NA+I+ F   G    AL  +++M+     +D FTI
Sbjct: 694 YAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTI 753

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++    V+  +  G+ +HA + K    SNV +Q+ L+ MY  CG+  DA+ VF +M E
Sbjct: 754 SSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKE 813

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+V+W S++ G   +   ++A+ LF  M+K  +K D      V+S    AG   + ++ 
Sbjct: 814 RDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVIS----AGLGLENVEL 869

Query: 186 FYLMRNDASLEPPRAEHYTA--IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            +L+   A      ++ + A  +V +  + GF   AE   +SM  N     + +++S   
Sbjct: 870 GHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMP-NKNLVAWNSMISCYS 928

Query: 244 VHGNREIAVRSAKRVL 259
            +G  E+++    ++L
Sbjct: 929 WNGLPEMSINLLPQIL 944



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 133/276 (48%), Gaps = 7/276 (2%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            Y +C S+ D  +V+ +++ R+ ++W ++IAGFC     + AL  F  M + G+  D   +
Sbjct: 795  YYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVM 854

Query: 66   TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            TS++ A   +   + G  +H    K G +S+VFV   LV MY+  G    A  VFSSM  
Sbjct: 855  TSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPN 914

Query: 126  RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            ++LV+WNS++   + +G    ++ L  Q+ +     D  +   VL A      + KG   
Sbjct: 915  KNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTL 974

Query: 185  YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            + Y +R      P   +   A++ +  + G L  A+    +M R      + ++++    
Sbjct: 975  HAYQIRLQI---PSDLQVENALIDMYVKCGCLKYAQLIFENMPRR-NLVTWNSMIAGYGS 1030

Query: 245  HGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
            HGN E AVR  K +   +  P++     L+++ S +
Sbjct: 1031 HGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHS 1066



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 17/186 (9%)

Query: 34  IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY 93
           I      G   QAL+  S+   + +    FT  S++     +S    G+ +HA I  +G 
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 472

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDER-----DLVSWNSLLLGCAHHGYSREAV 148
            S+ ++   L+ MY  CG +  A +VF  M E      D+  WN ++ G   +G+  E +
Sbjct: 473 QSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGL 532

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN----DASLEPPRAEHY 203
             F +MQ+  I+PDG +  +VL  C    +   G Q + Y++RN    D  LE       
Sbjct: 533 AQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLE------- 585

Query: 204 TAIVGL 209
           TA++G+
Sbjct: 586 TALIGM 591



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN +I G+   G  E+ L  F  M++ GI  D ++++ ++G    +S +  G+Q+H  I 
Sbjct: 515 WNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYII 574

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER-DLVSWNSLLLGCAHHGYSREAV 148
           +  ++ + +++  L+ MY+ C    +A  +F  ++ R ++V+WN ++ G   +G   +++
Sbjct: 575 RNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSL 634

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +L+   +    K    +F    +AC H   +D G Q
Sbjct: 635 ELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQ 670



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 1/178 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS C   ++  +++  +  R N ++WN +I GF   G  E++L+ +S  +     +   +
Sbjct: 592 YSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSAS 651

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            T    A         G+Q+H  + K+ +  + +V   L+ MYA  G++ DA KVF  + 
Sbjct: 652 FTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVL 711

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++++   N+++     +G + +A+ L+ +M+  E   D  T   +LS C   G  D G
Sbjct: 712 DKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFG 769


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/305 (35%), Positives = 180/305 (59%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC        ++ S++T++  +WN++++G+ ++   E+A   F EM  +GI+ +Y
Sbjct: 321 ITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNY 380

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            TI SI+     ++  ++GK+ H  I +  G++  + + N LV MYA  G +  A +VF 
Sbjct: 381 VTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFD 440

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           S+  RD V++ SL+ G    G  + A++LF++M K  IKPD  T + VLSAC H+G + +
Sbjct: 441 SLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSGLVTE 500

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G   F  M     + P   EH++ +V L GRAG LN+A+  I SM   P  +++  L+ A
Sbjct: 501 GNVLFEKMSTLYGIVPA-VEHFSCMVDLFGRAGLLNKAKKVITSMPYRPTTAMWATLVGA 559

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++HGN EI   +A+++L++ P +P  YVL++N+  A   W    ++RT M + G+RK P
Sbjct: 560 CRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAGRWSKLAEVRTYMRDLGVRKAP 619

Query: 302 GYSWV 306
           G +WV
Sbjct: 620 GCTWV 624



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 12/233 (5%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N I+WN I  G     + + AL+  S+MR+  ID+D   +   +GA   I   K G  +H
Sbjct: 243 NIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIH 302

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
           A   +  +D    V+N L+ MY+ C  +  A+ +F S+  + L +WNS+L G  H   S 
Sbjct: 303 ASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSE 362

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF-YLMRNDASLEPPRAEHY- 203
           EA  LF +M  + I+P+  T   +L  C     + +G ++  Y+MR +        E Y 
Sbjct: 363 EASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREG------FEDYL 416

Query: 204 ---TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
               ++V +  R+G +  A+   +S+ R    + Y +L++   + G  + A++
Sbjct: 417 LLWNSLVEMYARSGKVLSAKRVFDSLRRRDKVT-YTSLIAGYGIQGEGKTALK 468



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 2/174 (1%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N + WN +I+ + N G   +AL  + EM   G+  D FT  S++ A G       G+++H
Sbjct: 106 NPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVH 165

Query: 86  ALI-FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
             I    G+  N++V N LV MY   G ++ A ++F+ M ERD VSWN ++   A  G  
Sbjct: 166 ESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLW 225

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN-DASLEP 197
           +EA +LFE+M+    + +  T+  +   C         L+    MR  D  L+P
Sbjct: 226 KEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDP 279



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 5/186 (2%)

Query: 45  QALKCFSEMR----QAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQ 100
           +A + FS ++     A  D    +I+S++ +   +    +GKQ+HA    +G+++++ + 
Sbjct: 20  KAFETFSLIKLHASSANRDAILHSISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLV 79

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
            +LV  Y+    + DA+ +  + D  + + WN L+    ++G   EA+  + +M    ++
Sbjct: 80  PKLVTFYSSFSLLADAHTITVNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVR 139

Query: 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220
           PD  T+  VL AC     +D G +    + N A         + ++V + G+ G L+ A 
Sbjct: 140 PDNFTYPSVLKACGEKLDLDFGREVHESI-NAAYGHRWNLYVHNSLVSMYGKFGELDAAR 198

Query: 221 SFINSM 226
              N M
Sbjct: 199 RLFNQM 204


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C         +  +  ++ + WN++I      G  E+A+  F +M  AG   D  +I
Sbjct: 396 YAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSI 455

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++ + A   +     GK++HA + +  + S++F ++ L+ MY+ CG ++ A +VF +M+E
Sbjct: 456 SAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEE 515

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++ VSWNS++    +HG  ++++ LF  M    I+PD  TFL ++SAC HAG +D+G+ Y
Sbjct: 516 KNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHY 575

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  +  +   R EHY  +V L GRAG LNEA   INSM  +P   V+  LL AC++H
Sbjct: 576 FRCMTEELGIM-ARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLH 634

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+A  +++ + DL P +   YVLLSNV      W+    IR+LM  RG++K PG SW
Sbjct: 635 GNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSW 694

Query: 306 V 306
           +
Sbjct: 695 I 695



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 101/202 (50%), Gaps = 1/202 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C + LD +N++  +R      WN +I GF  +G  + AL  + +M   G   D +T 
Sbjct: 91  YVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTF 150

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A G ++    G+ +H  I  +G++ +VFV + L+  Y+  G I+DA  +F  M  
Sbjct: 151 PYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPS 210

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D V WN +L G   +G    A  +F +M++TE  P+  TF  VLS C     I+ G Q 
Sbjct: 211 KDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQL 270

Query: 186 FYLMRNDA-SLEPPRAEHYTAI 206
             L+ +    ++ P A  +  I
Sbjct: 271 HGLVVSSGLEMDSPVANTFALI 292



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 115/241 (47%), Gaps = 3/241 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + ++      + +   A+I+G+   G    AL+ F  + Q  +  +  T+
Sbjct: 295 YFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTL 354

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   ++    GK++H  I K G+  + +V + ++ MYA CG ++ A++ F  + +
Sbjct: 355 ASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISD 414

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D V WNS++  C+ +G   EA+ LF QM     K D  +    LSAC +   +  G + 
Sbjct: 415 KDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEI 474

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M   A      AE  +A++ +  + G L+ A    ++M      S + ++++A   H
Sbjct: 475 HAFMMRGAFRSDLFAE--SALIDMYSKCGNLDLACRVFDTMEEKNEVS-WNSIIAAYGNH 531

Query: 246 G 246
           G
Sbjct: 532 G 532



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/251 (19%), Positives = 113/251 (45%), Gaps = 9/251 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS      D + ++  + +++ + WN ++ G+   G  + A   F EMR+   + +  T 
Sbjct: 192 YSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTF 251

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVFSSM 123
             ++           G Q+H L+   G + +  V N   L+ +Y  C  +  A K+F   
Sbjct: 252 ACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQR 311

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
              D+V   +++ G   +G +  A+++F  + +  ++ +  T   VL AC     +  G 
Sbjct: 312 TPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGK 371

Query: 184 Q-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSA 241
           + + ++++N            +AI+ +  + G L+ A ++FI    ++     + +++++
Sbjct: 372 ELHGHILKNG---HGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKD--AVCWNSMITS 426

Query: 242 CQVHGNREIAV 252
           C  +G  E A+
Sbjct: 427 CSQNGKPEEAI 437



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%)

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + SI+      SG  +G+Q HA +   G   N  +  +L+ MY +CGA  DA  +F  + 
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
                 WN ++ G    G    A+  + +M      PD  TF  V+ AC
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKAC 157


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C         +  +  ++ + WN++I      G  E+A+  F +M  AG   D  +I
Sbjct: 495 YAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSI 554

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++ + A   +     GK++HA + +  + S++F ++ L+ MY+ CG ++ A +VF +M+E
Sbjct: 555 SAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEE 614

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++ VSWNS++    +HG  ++++ LF  M    I+PD  TFL ++SAC HAG +D+G+ Y
Sbjct: 615 KNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHY 674

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  +  +   R EHY  +V L GRAG LNEA   INSM  +P   V+  LL AC++H
Sbjct: 675 FRCMTEELGIM-ARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLH 733

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+A  +++ + DL P +   YVLLSNV      W+    IR+LM  RG++K PG SW
Sbjct: 734 GNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSW 793

Query: 306 V 306
           +
Sbjct: 794 I 794



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 4/225 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C + LD +N++  +R      WN +I GF  +G  + AL  + +M   G   D +T 
Sbjct: 91  YVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTF 150

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A G ++    G+ +H  I  +G++ +VFV + L+  Y+  G I+DA  +F  M  
Sbjct: 151 PYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPS 210

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D V WN +L G   +G    A  +F +M++TE  P+  TF  VLS C     I+ G Q 
Sbjct: 211 KDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQL 270

Query: 186 FYLMRNDA-SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
             L+ +    ++ P A     ++ +  + G L +A    + M + 
Sbjct: 271 HGLVVSSGLEMDSPVA---NTLLAMYAKCGHLFDARRLFDMMPKT 312



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 1/192 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS      D + ++  + +++ + WN ++ G+   G  + A   F EMR+   + +  T 
Sbjct: 192 YSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTF 251

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++           G Q+H L+   G + +  V N L+ MYA CG + DA ++F  M +
Sbjct: 252 ACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPK 311

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            DLV+WN ++ G   +G+  EA  LF +M    +KPD  TF   L        + +G + 
Sbjct: 312 TDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEI 371

Query: 185 YFYLMRNDASLE 196
           + Y++RN  SL+
Sbjct: 372 HCYIIRNGVSLD 383



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 115/241 (47%), Gaps = 3/241 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + ++      + +   A+I+G+   G    AL+ F  + Q  +  +  T+
Sbjct: 394 YFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTL 453

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   ++    GK++H  I K G+  + +V + ++ MYA CG ++ A++ F  + +
Sbjct: 454 ASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISD 513

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D V WNS++  C+ +G   EA+ LF QM     K D  +    LSAC +   +  G + 
Sbjct: 514 KDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEI 573

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M   A      AE  +A++ +  + G L+ A    ++M      S + ++++A   H
Sbjct: 574 HAFMMRGAFRSDLFAE--SALIDMYSKCGNLDLACRVFDTMEEKNEVS-WNSIIAAYGNH 630

Query: 246 G 246
           G
Sbjct: 631 G 631



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 123/249 (49%), Gaps = 7/249 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D + ++  +   + ++WN +I+G+   G  ++A   F EM  A +  D  T 
Sbjct: 293 YAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITF 352

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S +  +   +  ++GK++H  I + G   +VF+++ L+ +Y  C  +  A K+F     
Sbjct: 353 SSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTP 412

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            D+V   +++ G   +G +  A+++F  + +  ++ +  T   VL AC     +  G + 
Sbjct: 413 VDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKEL 472

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSACQ 243
           + ++++N            +AI+ +  + G L+ A ++FI    ++     + +++++C 
Sbjct: 473 HGHILKNG---HGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKD--AVCWNSMITSCS 527

Query: 244 VHGNREIAV 252
            +G  E A+
Sbjct: 528 QNGKPEEAI 536



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%)

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + SI+      SG  +G+Q HA +   G   N  +  +L+ MY +CGA  DA  +F  + 
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
                 WN ++ G    G    A+  + +M      PD  TF  V+ AC
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKAC 157


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 174/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C +     N+++S+  +N +SWNAIIA    LG GE+ALK F +M+ AG  +D 
Sbjct: 491 ITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDR 550

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             +   + +   ++  +EG Q+H L  K G DS+ +V N  + MY  CG +++  +V   
Sbjct: 551 VCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPD 610

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              R    WN+L+ G A +GY +EA + F+QM  T  KPD  TF+ +LSAC HAG +DKG
Sbjct: 611 QAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKG 670

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           + Y+  M +   + P   +H   IV LLGR G   EAE FI  M   P   ++++LLS+ 
Sbjct: 671 IDYYNSMASSFGVSPG-IKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSS 729

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + H N EI  ++AK++L+L P D + YVLLSN+      W D   +R+ M    I K+P 
Sbjct: 730 RTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPA 789

Query: 303 YSWV 306
            SW+
Sbjct: 790 CSWL 793



 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 37/279 (13%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C+S  D + V+ S+ T + +S+N +I G+  L  G +A++ FS MR AGI  +Y
Sbjct: 389 ITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNY 448

Query: 63  FTITSIVGAIGVISGFKE-GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T+ +I G+    +     G+ +HA I + G+ S+ +V N L+ MYA CG +  +  +F+
Sbjct: 449 ITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFN 508

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           S+  +++VSWN+++      G+  EA++LF  MQ    K D       LS+C     +++
Sbjct: 509 SITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEE 568

Query: 182 GLQYFYL-MRN------------------------------DASLEPPRAEHYTAIVGLL 210
           G+Q   L M++                              D ++ P +   +  ++   
Sbjct: 569 GMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQC--WNTLISGY 626

Query: 211 GRAGFLNEAESFINSM---SRNPGPSVYKALLSACQVHG 246
            + G+  EAE     M    R P    + ALLSAC   G
Sbjct: 627 AKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAG 665



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 8/218 (3%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D Q ++  +  RN +SW A++    + G  E+AL+ + +MR+ G+  +     ++V   G
Sbjct: 97  DAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCG 156

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +     G Q+ + +   G  + V V N L+ M+   G ++DA K+F  M+E D +SWN+
Sbjct: 157 SLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNA 216

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-MRN- 191
           ++   +H G   +   +F  M+   ++PD TT   ++S C  +     G     L +R+ 
Sbjct: 217 MISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSS 276

Query: 192 -DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
            D+S+         A+V +   AG L++AE    +MSR
Sbjct: 277 LDSSVTV-----INALVNMYSAAGKLSDAEFLFWNMSR 309



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 127/265 (47%), Gaps = 11/265 (4%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +   + ISWNA+I+ + + G   +    FS+MR  G+  D  T+ S++    
Sbjct: 198 DAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCA 257

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
               F  G  +H+L  +   DS+V V N LV MY+  G ++DA  +F +M  RDL+SWN+
Sbjct: 258 SSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNT 317

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG-FIDKGLQYFYLMRND 192
           ++     +  S +A++   Q+  T   P+  TF   L AC   G  ID  + +  +++  
Sbjct: 318 MISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQ-- 375

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV--HGNREI 250
            SL+        +++ + G+   + +AE    SM  +   S Y  L+    V   G + +
Sbjct: 376 LSLQRNLLVG-NSLITMYGKCNSMEDAEKVFQSMPTHDIVS-YNVLIGGYAVLEDGTKAM 433

Query: 251 AVRSAKRVLDLWPNDPAIYVLLSNV 275
            V S  R   + PN    Y+ + N+
Sbjct: 434 QVFSWMRSAGIKPN----YITMINI 454



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 84/162 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS      D + ++ ++  R+ ISWN +I+ +    +   ALK   ++       ++ T 
Sbjct: 291 YSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTF 350

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S +GA        +GK +HA++ ++    N+ V N L+ MY  C ++ DA KVF SM  
Sbjct: 351 SSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPT 410

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
            D+VS+N L+ G A      +A+Q+F  M+   IKP+  T +
Sbjct: 411 HDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMI 452



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 127/277 (45%), Gaps = 19/277 (6%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI---GVISGFKEG 81
           R   +W   ++G    G    A +    MR+ G+ +  F + S+V A    G   G   G
Sbjct: 4   RTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACG 63

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
             +HAL  + G   NV++   L+ +Y   G ++DA ++F  M ER++VSW +L++  + +
Sbjct: 64  AAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSN 123

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-----MRNDASLE 196
           GY  EA++ + QM++  +  +   F  V+S C        GLQ         ++N  S+ 
Sbjct: 124 GYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVA 183

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG--NREIAVRS 254
                   +++ + G  G +++AE   + M  +   S + A++S     G  ++   V S
Sbjct: 184 -------NSLITMFGNLGRVHDAEKLFDRMEEHDTIS-WNAMISMYSHQGICSKCFLVFS 235

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTL 291
             R   L P+   +  L+S V  ++D +     I +L
Sbjct: 236 DMRHHGLRPDATTLCSLMS-VCASSDHFSHGSGIHSL 271


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 176/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+     D + V++ +  R+ + WNA+I G      GE+A+K F++++ +G+  + 
Sbjct: 459 IDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNE 518

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  ++V     +     G+Q HA I K G DS+  V N L+ MYA CG I +   +F S
Sbjct: 519 FTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFES 578

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              +D++ WNS++   A HG + EA+ +F  M  T ++P+  TF+ VLSAC HAG +D+G
Sbjct: 579 TLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEG 638

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L++F  M+   ++EP   EHY ++V L GR+G L+ A+ FI  M   P  +V+++LLSAC
Sbjct: 639 LRHFDFMKTKYAIEPG-TEHYASVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSAC 697

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            + GN EI   + +  L   P D    VL+SN+  +   W DA  +R  M   G+ K+PG
Sbjct: 698 HLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASRGLWSDAQKLRQGMDCAGVVKEPG 757

Query: 303 YSWV 306
           YSW+
Sbjct: 758 YSWI 761



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 125/251 (49%), Gaps = 11/251 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+   + + V+ ++   + IS+NA+I G+  LG    A+  FS+MR   +     T 
Sbjct: 361 YAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTF 420

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++G     S  +  KQ+H LI K G   +++  + L+ +Y+    + DA  VF+ M  
Sbjct: 421 VSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHN 480

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+V WN+++ G A +    EAV+LF Q+Q + + P+  TF+ +++       +  G Q+
Sbjct: 481 RDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQF 540

Query: 186 FYLMRNDASLEPPRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALLSA 241
              +    +     ++H+   A++ +  + GF+ E      S     G  V  + +++S 
Sbjct: 541 HAQIIKAGA----DSDHHVSNALIDMYAKCGFIKEGRLLFES---TLGKDVICWNSMIST 593

Query: 242 CQVHGNREIAV 252
              HG  E A+
Sbjct: 594 YAQHGQAEEAL 604



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 137/283 (48%), Gaps = 10/283 (3%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+ ++  +N ++W A+I G+  +G G  AL+ F +M   G+  D F + S V A   +  
Sbjct: 171 VFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGF 230

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G+Q H   ++I  +++  V N L+ +Y  C  ++ A K+F  M+ R+LVSW +++ G
Sbjct: 231 LEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAG 290

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
              +    EA+ +F Q+ +   +PD      +L++C     I +G Q  +     A+LE 
Sbjct: 291 YMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQ-VHAHAIKANLE- 348

Query: 198 PRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR--EIAVR 253
             ++ Y   +++ +  +   L EA +   +++ +   S Y A++      G+    I V 
Sbjct: 349 --SDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAIS-YNAMIEGYSRLGDLAGAIDVF 405

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
           S  R   L P+ P  +V L  VS +    + +  I  L+   G
Sbjct: 406 SKMRYCSLKPS-PLTFVSLLGVSSSQSAIELSKQIHGLIVKSG 447



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 135/274 (49%), Gaps = 7/274 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + ++  +  RN +SW  +IAG+       +A+  F ++ Q G   D F  
Sbjct: 260 YCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFAC 319

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ + G ++   +G+Q+HA   K   +S+ +V+N L+ MYA C  + +A  VF ++ E
Sbjct: 320 ASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAE 379

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            D +S+N+++ G +  G    A+ +F +M+   +KP   TF+ +L        I+   Q 
Sbjct: 380 DDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQI 439

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +  ++++  SL+       ++++ +  +   + +A++  N M  N    ++ A++     
Sbjct: 440 HGLIVKSGTSLDLYAG---SSLIDVYSKFSLVEDAKAVFNLM-HNRDMVIWNAMIFGLAQ 495

Query: 245 HGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVS 276
           +   E AV+  +  +V  L PN+     L++  S
Sbjct: 496 NEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVAS 529



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 99/202 (49%), Gaps = 7/202 (3%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA--GI 58
           L +  YS+     D + ++  +  +N +SW + I+     G  E A+  F+  ++A  G 
Sbjct: 51  LLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQRASGGE 110

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
             + F + S + A         G+Q+H +  +IG D NV+V   L+ +YA  G I+ A  
Sbjct: 111 APNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAML 170

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           VF ++  ++ V+W +++ G +  G    A++LF +M    ++PD       +SAC   GF
Sbjct: 171 VFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGF 230

Query: 179 IDKGLQ-----YFYLMRNDASL 195
           ++ G Q     Y   +  DAS+
Sbjct: 231 LEGGRQTHGYAYRIAVETDASV 252



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA     G   ++F+ N L+  Y+  G + DA ++F  M  ++LVSW S +   A HG  
Sbjct: 34  HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93

Query: 145 REAVQLFEQMQKTEIKPDGTTFLV--VLSACCHAGFIDKGLQ 184
            +AV LF   Q+         FL+   L AC  +  +  G Q
Sbjct: 94  EDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQ 135


>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
 gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 177/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y +       + ++  +R ++ ISWN +IAG+ + G GE+A++  + M + G+  D+
Sbjct: 211 ITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDH 270

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ +++ A   ++  ++GK  HA+  K   +S +   N L+ MY+ CG + ++  VF +
Sbjct: 271 ATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFIN 330

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  +D+VSWN+++   A HG  ++ + LF +M+ T + PD  TFL VLSAC H G +D  
Sbjct: 331 LRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDAS 390

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+ F LM +  ++  PRAEHY  IV +L RAG L +A S+I  M      +V+ +LL AC
Sbjct: 391 LKLFDLMSSKYAIS-PRAEHYACIVDILSRAGQLEKASSYIKDMPLEAEKNVWGSLLGAC 449

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           Q+HGN ++   +AK ++         YV+LSN+  A   W     +R  M  RG++K+PG
Sbjct: 450 QMHGNVQLGELAAKMLVQSDSESSGPYVILSNIYAAAGMWGQVNQVRGQMKERGVKKQPG 509

Query: 303 YSWV 306
           YSW 
Sbjct: 510 YSWT 513



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 132/289 (45%), Gaps = 33/289 (11%)

Query: 13  LDFQNVY-SSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT----- 66
           LD  + Y +    RN  +WNA++AG   LG  + A + F EM +  + + Y T+      
Sbjct: 96  LDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRLFGEMPKRNV-VSYTTMVDGLAR 154

Query: 67  -----------------SIVGAIGVISGFKE-GKQMHAL-IFKIGYDSNVFVQNRLVFMY 107
                            ++V    +ISG+ E G  + A  +F+   + NV     ++  Y
Sbjct: 155 RGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEATKLFEAMPEKNVVACTAMITSY 214

Query: 108 AICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
              G +  A ++F  +  +D++SWN+++ G  H+G+  EA++L   M +  +KPD  T +
Sbjct: 215 CKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLI 274

Query: 168 VVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE-SFINSM 226
            VL+AC     + +G +  + +   A LE        A++ +  + G + E+E  FIN  
Sbjct: 275 AVLTACSALALLRQG-KSTHAIAIKAMLESG-ISFSNALMTMYSKCGNVGESELVFIN-- 330

Query: 227 SRNPGPSVYKALLSACQVHGN--REIAVRSAKRVLDLWPNDPAIYVLLS 273
            R      +  +++A   HG   + IA+     +  L P+D     +LS
Sbjct: 331 LRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLS 379



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 85/214 (39%), Gaps = 36/214 (16%)

Query: 2   QILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGE--QALKCFSEMRQAGID 59
           +I   +R       + V+ ++  R+ +SWNA++      G      A + F E   A   
Sbjct: 21  RISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLFDE---AMPS 77

Query: 60  IDYFTITSIV------GAIGVISGFKEG---------KQMHALIFKIGY----------- 93
            D  +  SI+      G +   S +  G           M A + ++G            
Sbjct: 78  RDVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRLFGEM 137

Query: 94  -DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
              NV     +V   A  G +  A +VF +M +R+LVSW +++ G   +G   EA +LFE
Sbjct: 138 PKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEATKLFE 197

Query: 153 QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
            M +  +         ++++ C  G ++   + F
Sbjct: 198 AMPEKNV----VACTAMITSYCKQGDVESARRLF 227



 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 16/166 (9%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG--YSREAVQLFEQMQKTE 158
           N+ +   A  G +  A +VF +M  RD+VSWN+LL      G  +   A +LF++   + 
Sbjct: 19  NQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSR 78

Query: 159 IKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218
              D  ++  +++ C   G +D    YF      A         + A++  L R G  ++
Sbjct: 79  ---DVVSWNSIIAGCLAHGDLDAASAYF------AGAPKRNVATWNAMLAGLLRLGRADD 129

Query: 219 AESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
           A+     M +    S Y  ++      G     V  A+ V D  P+
Sbjct: 130 ADRLFGEMPKRNVVS-YTTMVDGLARRGE----VARAREVFDAMPD 170


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 174/304 (57%), Gaps = 1/304 (0%)

Query: 3    ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
            I  Y++C +     N+++S+  +N +SWNAIIA    LG GE+ALK F +M+ AG  +D 
Sbjct: 793  ITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDR 852

Query: 63   FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
              +   + +   ++  +EG Q+H L  K G DS+ +V N  + MY  CG +++  +V   
Sbjct: 853  VCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPD 912

Query: 123  MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
               R    WN+L+ G A +GY +EA + F+QM  T  KPD  TF+ +LSAC HAG +DKG
Sbjct: 913  QAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKG 972

Query: 183  LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + Y+  M +   + P   +H   IV LLGR G   EAE FI  M   P   ++++LLS+ 
Sbjct: 973  IDYYNSMASSFGVSPG-IKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSS 1031

Query: 243  QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            + H N EI  ++AK++L+L P D + YVLLSN+      W D   +R+ M    I K+P 
Sbjct: 1032 RTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPA 1091

Query: 303  YSWV 306
             SW+
Sbjct: 1092 CSWL 1095



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 37/279 (13%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C+S  D + V+ S+ T + +S+N +I G+  L  G +A++ FS MR AGI  +Y
Sbjct: 691 ITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNY 750

Query: 63  FTITSIVGAIGVISGFKE-GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T+ +I G+    +     G+ +HA I + G+ S+ +V N L+ MYA CG +  +  +F+
Sbjct: 751 ITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFN 810

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           S+  +++VSWN+++      G+  EA++LF  MQ    K D       LS+C     +++
Sbjct: 811 SITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEE 870

Query: 182 GLQYFYL-MRN------------------------------DASLEPPRAEHYTAIVGLL 210
           G+Q   L M++                              D ++ P +   +  ++   
Sbjct: 871 GMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQC--WNTLISGY 928

Query: 211 GRAGFLNEAESFINSM---SRNPGPSVYKALLSACQVHG 246
            + G+  EAE     M    R P    + ALLSAC   G
Sbjct: 929 AKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAG 967



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 8/218 (3%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D Q ++  +  RN +SW A++    + G  E+AL+ + +MR+ G+  +     ++V   G
Sbjct: 399 DAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCG 458

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +     G Q+ + +   G  + V V N L+ M+   G ++DA K+F  M+E D +SWN+
Sbjct: 459 SLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNA 518

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-MRN- 191
           ++   +H G   +   +F  M+   ++PD TT   ++S C  +     G     L +R+ 
Sbjct: 519 MISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSS 578

Query: 192 -DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
            D+S+         A+V +   AG L++AE    +MSR
Sbjct: 579 LDSSVTV-----INALVNMYSAAGKLSDAEFLFWNMSR 611



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 124/275 (45%), Gaps = 31/275 (11%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +   + ISWNA+I+ + + G   +    FS+MR  G+  D  T+ S++    
Sbjct: 500 DAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCA 559

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
               F  G  +H+L  +   DS+V V N LV MY+  G ++DA  +F +M  RDL+SWN+
Sbjct: 560 SSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNT 619

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----------CHAGFIDKG 182
           ++     +  S +A++   Q+  T   P+  TF   L AC            HA  +   
Sbjct: 620 MISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLS 679

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           LQ   L+ N             +++ + G+   + +AE    SM  +   S Y  L+   
Sbjct: 680 LQRNLLVGN-------------SLITMYGKCNSMEDAEKVFQSMPTHDIVS-YNVLIGGY 725

Query: 243 QV--HGNREIAVRSAKRVLDLWPNDPAIYVLLSNV 275
            V   G + + V S  R   + PN    Y+ + N+
Sbjct: 726 AVLEDGTKAMQVFSWMRSAGIKPN----YITMINI 756



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 133/285 (46%), Gaps = 19/285 (6%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI---G 73
           +++  +  R   +W   ++G    GS  +A +    MR+ G+ +  F + S+V A    G
Sbjct: 298 HLFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRG 357

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
              G   G  +HAL  + G   NV++   L+ +Y   G ++DA ++F  M ER++VSW +
Sbjct: 358 RDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTA 417

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL----- 188
           L++  + +GY  EA++ + QM++  +  +   F  V+S C        GLQ         
Sbjct: 418 LMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSG 477

Query: 189 MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG-- 246
           ++N  S+         +++ + G  G +++AE   + M  +   S + A++S     G  
Sbjct: 478 LQNQVSVA-------NSLITMFGNLGRVHDAEKLFDRMEEHDTIS-WNAMISMYSHQGIC 529

Query: 247 NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTL 291
           ++   V S  R   L P+   +  L+S V  ++D +     I +L
Sbjct: 530 SKCFLVFSDMRHHGLRPDATTLCSLMS-VCASSDHFSHGSGIHSL 573



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 84/162 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS      D + ++ ++  R+ ISWN +I+ +    +   ALK   ++       ++ T 
Sbjct: 593 YSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTF 652

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S +GA        +GK +HA++ ++    N+ V N L+ MY  C ++ DA KVF SM  
Sbjct: 653 SSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPT 712

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
            D+VS+N L+ G A      +A+Q+F  M+   IKP+  T +
Sbjct: 713 HDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMI 754



 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI---G 73
           +++  +  R   +W   ++G    G    A +    MR+ G+ +  F + S+V A    G
Sbjct: 75  HLFDEMADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRG 134

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI 109
              G   G  +HAL  + G   NV++   L+ +  I
Sbjct: 135 RDEGIACGAAIHALTHRAGLMGNVYIGRALLHLPQI 170


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 179/302 (59%), Gaps = 1/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     D   V+  +  R+ ++  AII+G+  +G  E+ALK F +++  G++ +  T 
Sbjct: 236 YAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTY 295

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A+  ++    GKQ+H+ + + G  S V + N L+ MY+ CG +  A ++F SM E
Sbjct: 296 ASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPE 355

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           R  +SWN++L+G + HG +RE ++LF+ M ++ ++KPD  T+L VLS C H    D GL+
Sbjct: 356 RTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLE 415

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            FY M N      P   HY  +V LLGRAG + EA  FI  M   P  +++ +LL +C+V
Sbjct: 416 IFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRV 475

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H + EI +   +++L+L P +   YV+LSN+  +   W+D  +IR LM  + + K+PG S
Sbjct: 476 HSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRS 535

Query: 305 WV 306
           WV
Sbjct: 536 WV 537



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 105/182 (57%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y++CD   D + ++  +  +N +SW A+I+ +   G   +AL  F EM ++  + ++
Sbjct: 132 IVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNH 191

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  +I+ +     GF+ G+Q+H++  K  Y+S++FV + L+ MYA  G I DA+ VF  
Sbjct: 192 FTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHC 251

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ERD+V+  +++ G A  G   EA++LF Q+Q   +  +  T+  VL+A      ++ G
Sbjct: 252 LPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHG 311

Query: 183 LQ 184
            Q
Sbjct: 312 KQ 313



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 78/137 (56%), Gaps = 3/137 (2%)

Query: 37  FCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN 96
            C+ G  ++AL    +M   G ++ +    +I+         +EG+++H  + K  Y  +
Sbjct: 68  LCSSGQLKEALL---QMAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPS 124

Query: 97  VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
           V+++ RL+ +Y  C  + DA ++F  M ++++VSW +++   +  G++ EA+ LF +M +
Sbjct: 125 VYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLR 184

Query: 157 TEIKPDGTTFLVVLSAC 173
           ++ +P+  TF  +L++C
Sbjct: 185 SDTEPNHFTFATILTSC 201


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 111/291 (38%), Positives = 172/291 (59%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+ +++ +  ISWNA++A + N     +A++ F  M +  ++ D  T+ +++   G +
Sbjct: 247 RRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGEL 306

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S F  GK++H +I +     N+ ++N L+ MYA CG + DA ++F  M  RD++SW S++
Sbjct: 307 SAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSII 366

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
                HG+ REAV LFE+M    ++PD   F+ VL+AC HAG +  G  YF  M +   +
Sbjct: 367 SAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHI 426

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
             P+AEHYT +V LLGRAG +NEA  FI +M   P   V+ ALL AC++H N +I + +A
Sbjct: 427 I-PKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAA 485

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             +  L P     YVLLSN+      W D   +R++M N+GI+K PG S V
Sbjct: 486 DNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFPGTSIV 536



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 39/279 (13%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSE-MRQAGIDID 61
           I  YSRC    D   V+  +  R+ +SWNA+IAGF  +G  ++A++ F + +   G   D
Sbjct: 165 ISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPD 224

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             T+  I+ A+G                    D   FV+                 +VF 
Sbjct: 225 AGTMAGILPAMG----------------NAKPDDIRFVR-----------------RVFD 251

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           +M  ++L+SWN++L   A++ +  +AV+LF  M+K E++PD  T   VL  C        
Sbjct: 252 NMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSV 311

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G +   +++       P      A++ +    G L +A    + MS     S + +++SA
Sbjct: 312 GKRIHEIIKRKNMC--PNLLLENALMDMYASCGCLKDAREIFDLMSARDVIS-WTSIISA 368

Query: 242 CQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
              HG+   AV   +++L   L P+  A   +L+  S A
Sbjct: 369 YGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHA 407



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 4/154 (2%)

Query: 23  RTRNQ-ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYFTITSIVGAIGVISGFK 79
           R+R   + +N +I           AL  F+ MR  G     D++T    + +        
Sbjct: 81  RSRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLL 140

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
            G Q+H+ + K+  D NV+V +  + MY+ CG   DA +VF  M  RD+VSWN+++ G A
Sbjct: 141 LGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFA 200

Query: 140 HHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSA 172
             G    A+++F+Q    +   PD  T   +L A
Sbjct: 201 RVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPA 234



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C    D + ++  +  R+ ISW +II+ +   G G +A+  F +M   G++ D    
Sbjct: 338 YASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAF 397

Query: 66  TSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM- 123
            +++ A        +GK    ++  +            +V +    G IN+A    ++M 
Sbjct: 398 VAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTML 457

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            E +   W +LL  C  H  S   + L        + P+ T + V+LS
Sbjct: 458 IEPNERVWGALLQACRIH--SNMDIGLVAADNLFSLVPEQTGYYVLLS 503


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 173/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  + + ++  ++ R+ +SW  +I      G  E+    F ++ Q+G+  + +T 
Sbjct: 265 YGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTF 324

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A    +    GK++H  +   GYD   F  + LV MY+ CG    A +VF+ M +
Sbjct: 325 AGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQ 384

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            DLVSW SL++G A +G   EA+  FE + ++  KPD  T++ VLSAC HAG +DKGL+Y
Sbjct: 385 PDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEY 444

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ ++    L    A+HY  ++ LL R+G   EAE+ I++M   P   ++ +LL  C++H
Sbjct: 445 FHSIKEKHGLMHT-ADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIH 503

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+A R+AK + ++ P +PA Y+ L+N+      W +  ++R  M N GI KKPG SW
Sbjct: 504 GNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSW 563

Query: 306 V 306
           +
Sbjct: 564 I 564



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 113/256 (44%), Gaps = 36/256 (14%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM------------ 53
           Y++C S +D Q ++  +  R+  SWN +I G+  LG  EQA K F EM            
Sbjct: 132 YAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAI 191

Query: 54  --------------------RQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY 93
                               R      + FT++S + A   I   + GK++H  + +   
Sbjct: 192 SGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTEL 251

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           + +  V + L+ +Y  CG++++A  +F  M +RD+VSW +++  C   G   E   LF  
Sbjct: 252 NLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRD 311

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGR 212
           + ++ ++P+  TF  VL+AC        G + + Y+M        P +   +A+V +  +
Sbjct: 312 LMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYD---PGSFAISALVHMYSK 368

Query: 213 AGFLNEAESFINSMSR 228
            G    A    N M +
Sbjct: 369 CGNTRVARRVFNEMHQ 384



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 47/222 (21%)

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++ A       + G+++HA      +   VF+ NRL+ MYA CG++ DA  +F  M  
Sbjct: 91  STLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGH 150

Query: 126 RDLVSWNSLLLGCAH-------------------------------HGYSREAVQLFEQM 154
           RDL SWN++++G A                                H   REA++LF  M
Sbjct: 151 RDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVM 210

Query: 155 QKTEIKPDGTTFLVVLS-------ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           Q+ E +     F +  +        C   G    G    YL+R + +L+      ++A++
Sbjct: 211 QRHE-RSSSNKFTLSSALAASAAIPCLRLGKEIHG----YLIRTELNLDEVV---WSALL 262

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNRE 249
            L G+ G L+EA    + M      S +  ++  C   G RE
Sbjct: 263 DLYGKCGSLDEARGIFDQMKDRDVVS-WTTMIHRCFEDGRRE 303


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 186/304 (61%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+  ++C      + ++  +  RN +SWN++I+G+   G   +A++ FS M++ GI    
Sbjct: 170 IIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSE 229

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ A   +   ++G+ +H  I K  +  N  V   ++ MY+ CG+I+ A +VF S
Sbjct: 230 FTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKS 289

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             ++ L  WNSL+LG A  G   EAV+LF +++ + +KPD  +F+ VL+AC HAG +D+ 
Sbjct: 290 APKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRA 349

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF LM     +EP   +HY+ +V +LGRAG L EAE  I SM  NP   ++ +LLS+C
Sbjct: 350 KDYFLLMSETYKIEPS-IKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSC 408

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + +GN E+A ++AKRV +L PN+ + ++LLSNV  A + +++A + R  +  + + K+PG
Sbjct: 409 REYGNIEMAKQAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPG 468

Query: 303 YSWV 306
            S +
Sbjct: 469 CSLI 472



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 124/270 (45%), Gaps = 38/270 (14%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDIDYFTITSIVGAIGVI 75
           V++ +R  N   WN II GF    +   A+  F +M            T  S+  A   +
Sbjct: 51  VFTQIRNPNLFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQL 110

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               EG Q+H  + K+G +++ F+QN ++ MY  CG + +A ++F      D+V+WN+++
Sbjct: 111 GLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMI 170

Query: 136 LGCAH--------------------------HGYSR-----EAVQLFEQMQKTEIKPDGT 164
           +G A                            GY R     EA++LF +MQ+  IKP   
Sbjct: 171 IGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEF 230

Query: 165 TFLVVLSACCHAGFIDKG-LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFI 223
           T + +L+AC   G + +G   + Y+++N+ +L    +   TAI+ +  + G +++A    
Sbjct: 231 TMVSLLNACACLGALRQGEWIHDYIVKNNFAL---NSIVITAIIDMYSKCGSIDKALQVF 287

Query: 224 NSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            S  +  G S + +L+    + G    AVR
Sbjct: 288 KSAPKK-GLSCWNSLILGLAMSGRGNEAVR 316



 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 15/153 (9%)

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNR-LVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +  K+ +++HA + K G   +    +R L F  +  G IN A  VF+ +   +L  WN++
Sbjct: 7   TSMKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTI 66

Query: 135 LLGCAHHGYSREAVQLFEQMQKTE--IKPDGTTFLVVLSACCHAGFIDKGLQYF-----Y 187
           + G +       A+ LF  M  T    +P   T+  V  A    G   +G Q        
Sbjct: 67  IRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKL 126

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220
            + ND  ++         I+ +    GFL EA+
Sbjct: 127 GLENDQFIQ-------NTILNMYVNCGFLGEAQ 152


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S    + V+  +  +N +SW A++ G+   G  E+A+K F +M+  GI+ D FT+
Sbjct: 319 YCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTL 378

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   ++  +EG Q H      G  S + V N LV +Y  CG+I D++++FS M  
Sbjct: 379 GSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSY 438

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VSW +L+ G A  G + E ++LFE M     KPD  TF+ VLSAC  AG + KG Q 
Sbjct: 439 VDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQI 498

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  +  + P   +HYT ++ L  RAG L EA  FIN M  +P    + +LLS+C+ H
Sbjct: 499 FESMIKEHRIIPIE-DHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFH 557

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N EI   +A+ +L L P++ A Y+LLS++  A   W++  ++R  M ++G+RK+PG SW
Sbjct: 558 RNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSW 617

Query: 306 V 306
           +
Sbjct: 618 I 618



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 122/220 (55%), Gaps = 2/220 (0%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           RC    D + ++  ++ ++ ISW A+IAGF   G   +A+  F EMR   +++D +T  S
Sbjct: 220 RCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGS 279

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           ++ A G +   +EGKQ+HA I +  Y  N+FV + LV MY  C +I  A  VF  M+ ++
Sbjct: 280 VLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKN 339

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
           +VSW ++L+G   +GYS EAV++F  MQ   I+PD  T   V+S+C +   +++G Q+  
Sbjct: 340 VVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFH- 398

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
             R   S          A+V L G+ G + ++    + MS
Sbjct: 399 -CRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMS 437



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 41/225 (18%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           +YS+     + + V+ ++ TR+ +SWN++I+ +   G   Q++K ++ M   G     F 
Sbjct: 84  SYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGP----FN 139

Query: 65  ITSIVGAIGVISGFKEG-----KQMHALIFKIGYDSNVFVQNRLVFMYAI---------- 109
           +  I  +  +I   K+G      Q+H  + K G+ S VFV + LV MY+           
Sbjct: 140 LNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQA 199

Query: 110 ---------------------CGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
                                C  I D+ ++F  M E+D +SW +++ G   +G  REA+
Sbjct: 200 FDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAI 259

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
            LF +M+   ++ D  TF  VL+AC     + +G Q + Y++R D
Sbjct: 260 DLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTD 304



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 8/174 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C S  D   ++S +   +++SW A+++G+   G   + L+ F  M   G   D 
Sbjct: 417 VTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDK 476

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR---LVFMYAICGAINDANKV 119
            T   ++ A       ++G Q+   + K      + +++    ++ +++  G + +A K 
Sbjct: 477 VTFIGVLSACSRAGLVQKGNQIFESMIK--EHRIIPIEDHYTCMIDLFSRAGRLEEARKF 534

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            + M    D + W SLL  C  H          E + K E  P  T   ++LS+
Sbjct: 535 INKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLE--PHNTASYILLSS 586



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           ++ K++H  I K   +  +F+ N LV  YA    I  A +VF  M +R+L SWN+LL   
Sbjct: 26  RDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSY 85

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           +      E  ++F  M       D  ++  ++SA    GF+ + ++ + LM
Sbjct: 86  SKLACLPEMERVFHAMPTR----DMVSWNSLISAYAGRGFLLQSVKAYNLM 132


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 176/302 (58%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C   LD  + ++  +  ++ I WN+II  F   G  E+A+  F +M   G+  D  T
Sbjct: 358 YAKC-GRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVT 416

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +++ + A   I     GK++H  + K  ++S++F  + L+ MYA CG +N A  VF+ M 
Sbjct: 417 VSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQ 476

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E++ V+WNS++    +HGY  +++ LF  M +  I+PD  TFL +LS+C HAG ++ G++
Sbjct: 477 EKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVR 536

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF  M  +  + P + EHY  +  L GRAG L+EA   I SM   P  SV+  LL AC+V
Sbjct: 537 YFRCMTEEYGI-PAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRV 595

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN E+A  +++ +LDL P +   Y+LL++V      W     I+ LM  RG++K PG S
Sbjct: 596 HGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQKVPGCS 655

Query: 305 WV 306
           W+
Sbjct: 656 WI 657



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           M   G+  D +T   ++     ++  + GK +  +I ++G+D ++FV + L+ +YA  G 
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           I DA + F  M ++D V WN ++ G    G S  A++LF+ M  +E KPD  TF  VLS 
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 173 CCHAGFIDKGLQ 184
            C    ++ G Q
Sbjct: 121 SCSEAMVEYGRQ 132



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D +  +  +  ++ + WN +I G+   G  + A+K F +M  +    D  T   ++    
Sbjct: 63  DARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISC 122

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
             +  + G+Q+H L+ + G D    V N LV +Y+    + DA K+F  M + DLV WN 
Sbjct: 123 SEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNR 182

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           ++ G   +G+  +A  LF +M    IKPD  TF   L +
Sbjct: 183 MIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPS 221



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 132/294 (44%), Gaps = 5/294 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C  ++    +++     + + + A+I+G+   G  + AL+ F  + Q  +  +  T 
Sbjct: 257 YFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTF 316

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+ A   ++  K G+++H  I K   +    V + ++ MYA CG ++ A+ +F  +  
Sbjct: 317 SSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISI 376

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D + WNS++   +  G   EA+ LF QM    +K D  T    LSAC +   +  G + 
Sbjct: 377 KDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEI 436

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M   A  E    +  +A++ +  + G LN A    N M +      + ++++A   H
Sbjct: 437 HGFMIKGA-FESDLFD-MSALINMYAKCGKLNIARLVFNLM-QEKNEVAWNSIIAAYGYH 493

Query: 246 GNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
           G    ++     +L+  + P+      +LS+   A    D     R +    GI
Sbjct: 494 GYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGI 547



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 114/226 (50%), Gaps = 4/226 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+     D + ++  +   + + WN +I G+   G  + A   F+EM  AGI  D 
Sbjct: 153 VTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDS 212

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T TS + ++   S  K+ K++H  I + G   +V++ + L+ +Y  C     A K+F+ 
Sbjct: 213 ITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNL 272

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             + D+V + +++ G   +G +++A+++F  + + ++ P+  TF  +L AC     I  G
Sbjct: 273 STKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLG 332

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
            + + Y+++N+   + P     +AI+ +  + G L+ A      +S
Sbjct: 333 RELHGYIIKNELEEKCPVG---SAIMNMYAKCGRLDLAHLIFGRIS 375


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 179/302 (59%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y +C      +++++ +  +N   WN +I G       E+AL  F+EM+ +G+  D  T
Sbjct: 282 VYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVT 341

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + S++ A   +   + GK +H  I K   + +V +   LV MYA CG+I  A +VF  M 
Sbjct: 342 MASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMP 401

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E+D+++W +L++G A  G   +A++LF +MQ +E+KPD  TF+ VL+AC HAG +++G+ 
Sbjct: 402 EKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIA 461

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF  M N   ++ P  EHY  +V +LGRAG + EAE  I +M   P   V   LLSAC++
Sbjct: 462 YFNSMPNKYGIQ-PSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRI 520

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN  +A R+A+++++L P +   YVLLSN+  +   W+ A  +R LM  R I+K PG S
Sbjct: 521 HGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCS 580

Query: 305 WV 306
            +
Sbjct: 581 AI 582



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 3/167 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V++ +      + N+II G+ N     QA+  +  M   G+D D FT  S+  + GV+  
Sbjct: 96  VFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLC- 154

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             EGKQ+H    K+G+ S+ ++QN L+ MY+ CG +  A KVF  M  + +VSW +++  
Sbjct: 155 --EGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGA 212

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            A      EA++LF +M+   +KP+  T + VL+AC  +  ++   Q
Sbjct: 213 YAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQ 259



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 2/224 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C   +  + V+  +  ++ +SW  +I  +       +A+K F  M  A +  +  T+
Sbjct: 182 YSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITL 241

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A       +  KQ+H  I + G   +  + + L+ +Y  CG    A  +F+ M E
Sbjct: 242 VNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPE 301

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++L  WN ++ G        EA+ LF +MQ + +K D  T   +L AC H G ++ G ++
Sbjct: 302 KNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG-KW 360

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
            ++      +E   A   TA+V +  + G +  A      M   
Sbjct: 361 LHVYIEKEKIEVDVALG-TALVDMYAKCGSIESAMRVFQEMPEK 403


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 179/302 (59%), Gaps = 1/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     D   V+  +  R+ ++  AII+G+  +G  E+ALK F +++  G++ +  T 
Sbjct: 208 YAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTY 267

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A+  ++    GKQ+H+ + + G  S V + N L+ MY+ CG +  A ++F SM E
Sbjct: 268 ASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPE 327

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           R  +SWN++L+G + HG +RE ++LF+ M ++ ++KPD  T+L VLS C H    D GL+
Sbjct: 328 RTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLE 387

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            FY M N      P   HY  +V LLGRAG + EA  FI  M   P  +++ +LL +C+V
Sbjct: 388 IFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRV 447

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H + EI +   +++L+L P +   YV+LSN+  +   W+D  +IR LM  + + K+PG S
Sbjct: 448 HSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRS 507

Query: 305 WV 306
           WV
Sbjct: 508 WV 509



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 105/182 (57%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y++CD   D + ++  +  RN +SW A+I+ +   G   +AL  F EM ++  + ++
Sbjct: 104 IVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNH 163

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  +I+ +     GF+ G+Q+H++  K  Y+S++FV + L+ MYA  G I DA+ VF  
Sbjct: 164 FTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHC 223

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ERD+V+  +++ G A  G   EA++LF Q+Q   +  +  T+  VL+A      ++ G
Sbjct: 224 LPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHG 283

Query: 183 LQ 184
            Q
Sbjct: 284 KQ 285



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 77/137 (56%), Gaps = 3/137 (2%)

Query: 37  FCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN 96
            C+ G  ++AL    +M   G ++ +    SI+         +EG+++H  + K  Y  +
Sbjct: 40  LCSSGQLKEALL---QMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPS 96

Query: 97  VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
           V+++ RL+ +Y  C  + DA  +F  M +R++VSW +++   +  G++ EA+ LF +M +
Sbjct: 97  VYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLR 156

Query: 157 TEIKPDGTTFLVVLSAC 173
           ++ +P+  TF  +L++C
Sbjct: 157 SDTEPNHFTFATILTSC 173


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + V+  ++ +N +SW A++ G+   G  E+A+K F +M+++GID D++T+
Sbjct: 315 YCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTL 374

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              + A   +S  +EG Q H      G    V V N LV +Y  CG I+D+ ++F+ M+ 
Sbjct: 375 GQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNV 434

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSW +++   A  G + E +QLF++M +  +KPDG T   V+SAC  AG ++KG +Y
Sbjct: 435 RDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRY 494

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM ++  + P    HY+ ++ L  R+G L EA  FIN M   P    +  LLSAC+  
Sbjct: 495 FKLMTSEYGIVPSIG-HYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNK 553

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN EI   +A+ +++L P+ PA Y LLS++  +   WD    +R  M  + ++K+PG SW
Sbjct: 554 GNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSW 613

Query: 306 V 306
           +
Sbjct: 614 I 614



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 119/221 (53%), Gaps = 11/221 (4%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           ++ +SW A+I G    G  ++A++CF EM+  G+ +D +   S++ A G +    EGKQ+
Sbjct: 233 KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQI 292

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA I +  +  +++V + L+ MY  C  ++ A  VF  M ++++VSW ++++G    G +
Sbjct: 293 HACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRA 352

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
            EAV++F  MQ++ I PD  T    +SAC +   +++G Q+         +      HY 
Sbjct: 353 EEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLI------HYV 406

Query: 205 AI----VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            +    V L G+ G ++++    N M+     S + A++SA
Sbjct: 407 TVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVS-WTAMVSA 446



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 103/213 (48%), Gaps = 31/213 (14%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           +L YS+     + ++ +  +  R+ ++WN +I G+   G    A+K ++ M R    ++ 
Sbjct: 79  LLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLT 138

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             T+ +++           GKQ+H  + K+G++S + V + L++MYA  G I+DA KVF 
Sbjct: 139 RVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFY 198

Query: 122 SMD------------------------------ERDLVSWNSLLLGCAHHGYSREAVQLF 151
            +D                              E+D VSW +++ G A +G ++EA++ F
Sbjct: 199 GLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECF 258

Query: 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +M+   +K D   F  VL AC   G I++G Q
Sbjct: 259 REMKVQGLKMDQYPFGSVLPACGGLGAINEGKQ 291



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/142 (19%), Positives = 69/142 (48%), Gaps = 2/142 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C    D   +++ +  R+ +SW A+++ +   G   + ++ F +M Q G+  D 
Sbjct: 413 VTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDG 472

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIF-KIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T+T ++ A       ++G++   L+  + G   ++   + ++ +++  G + +A +  +
Sbjct: 473 VTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFIN 532

Query: 122 SMD-ERDLVSWNSLLLGCAHHG 142
            M    D + W +LL  C + G
Sbjct: 533 GMPFPPDAIGWTTLLSACRNKG 554



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 4/125 (3%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           K +H  I +       F+ N +V  YA+  +   A +VF  + + +L SWN+LLL  +  
Sbjct: 26  KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAE 201
           G   E    FE++       DG T+ V++     +G +   ++ +  M  D S    R  
Sbjct: 86  GLISEMESTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVT 141

Query: 202 HYTAI 206
             T +
Sbjct: 142 LMTML 146


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 180/295 (61%), Gaps = 3/295 (1%)

Query: 14  DFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           D + ++S ++  +  + W A+I+G+      E+AL+ +  MR   I  D  T  S++ A 
Sbjct: 665 DSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRAC 724

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD-LVSW 131
             +S  + G+++H+LIF  G++ +    + L+ MYA CG +  + +VF  M  R+ ++SW
Sbjct: 725 AGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISW 784

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
           NS+++G A +GY+ EA+++F+QM++  I PD  TFL VLSAC HAG + +G + F LM N
Sbjct: 785 NSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFDLMVN 844

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
           +  L+P R +H   +V +LGR GFLNEAE FIN +     P ++  LL AC+ HG+    
Sbjct: 845 NYKLQP-RVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACRKHGDEVRG 903

Query: 252 VRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            R+A ++++L P   + YVLLS +   ++ W  A  +R  M  +G++K PGYSW+
Sbjct: 904 KRAANKLMELKPQSSSSYVLLSGLYAESENWSGADSLRREMKLKGVKKLPGYSWI 958



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + +++ +   N ++WN +I+G    G  E+A+  F E+++ G+     ++ S++ AI 
Sbjct: 261 DARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIA 320

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +S    G  +HA   K G D NV+V + LV MYA C  ++ A +VF+S+ ER++V WN+
Sbjct: 321 SLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNA 380

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM-RND 192
           +L G A +G ++E ++ F  M++   +PD  TF  + SAC    ++D G Q   +M +N 
Sbjct: 381 MLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNK 440

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEA 219
            +     A    A+V +  ++G L EA
Sbjct: 441 FTSNLFVA---NALVDMYAKSGALKEA 464



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 97/179 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + V++S+  RN + WNA++ GF   G  ++ ++ FS M++ G   D FT 
Sbjct: 354 YAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTF 413

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI  A   +     G Q+H ++ K  + SN+FV N LV MYA  GA+ +A K F  M  
Sbjct: 414 TSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKI 473

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            D VSWN++++G     Y+ EA  +F +M    + PD  +   ++SAC +     +G Q
Sbjct: 474 HDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQ 532



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 135/293 (46%), Gaps = 5/293 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  +  + +  +  ++  + +SWNAII G+      ++A   F  M   G+  D  ++
Sbjct: 455 YAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSL 514

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SIV A   +  FK+G+Q H L+ K+G D++    + L+ MY  CG +  A  VF SM  
Sbjct: 515 ASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPY 574

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++VS N+L+ G     +  EA+ LF+++Q   +KP   TF  +L  C  A  ++ G Q 
Sbjct: 575 RNVVSINALIAGYT-MSHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQI 633

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS--ACQ 243
              +     L        + +   +    F  ++E+  + +    G  V+ AL+S  A Q
Sbjct: 634 HGQVMKWGFLSSSEMVCVSLLCMYMNSQRFA-DSETLFSELQYPKGLVVWTALISGYAQQ 692

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
            H  + +      R  ++ P D A +  +              ++ +L+++ G
Sbjct: 693 NHHEKALQFYQHMRSDNILP-DQATFASVLRACAGMSSLQTGQEVHSLIFHTG 744



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 122/263 (46%), Gaps = 15/263 (5%)

Query: 6   YSRCDSSLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y +C  ++DF Q  +S +  ++  +WN++++ + + G     ++ F  M   G+  + FT
Sbjct: 86  YVKC-GNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHGVRPNEFT 144

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
              ++ A   +     GKQ+H  +FK+G+    F Q  L+ MYA C  + DA  VF    
Sbjct: 145 FAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLVFDGAL 204

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             D VSW +L+ G    G+  EAV++F++MQ+    PD    + V++A    G +    +
Sbjct: 205 NLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGRLADARK 264

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM-------SRNPGPSVYKA 237
            F  + N      P    +  ++    + GF  EA SF   +       +R+   SV  A
Sbjct: 265 LFTQIPN------PNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSA 318

Query: 238 LLSACQVHGNREIAVRSAKRVLD 260
           + S   ++    +  ++ K  LD
Sbjct: 319 IASLSMLNYGSMVHAQAIKEGLD 341



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 57/111 (51%)

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           V+      K +H+   KIG      + N +V +Y  CG ++ A K FS ++++D+ +WNS
Sbjct: 53  VLQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNS 112

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +L     HG     VQ F  M    ++P+  TF +VLSAC     I+ G Q
Sbjct: 113 VLSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQ 163


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 105/283 (37%), Positives = 176/283 (62%), Gaps = 2/283 (0%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           ++ + W A+I+G         AL+ + EMR   +  D  T  S + A  V+S  K+G + 
Sbjct: 695 KSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGTET 754

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD-ERDLVSWNSLLLGCAHHGY 143
           H+LIF  G+DS+    + LV MYA CG +  + +VF  M  ++D++SWNS+++G A +GY
Sbjct: 755 HSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGY 814

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY 203
           + +A+++F++M+++ + PD  TFL VL+AC H+G + +G   F +M N   ++P RA+H 
Sbjct: 815 AEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSGRVSEGRLIFDMMVNLYGMQP-RADHC 873

Query: 204 TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263
             +V LLGR G L EAE FIN ++  P   V+  +L AC++HG+     ++A+++++L P
Sbjct: 874 ACMVDLLGRWGSLKEAEEFINKLNFEPDAKVWATMLGACRIHGDDIRGQQAAEKLIELEP 933

Query: 264 NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            + + YVLLSN+  A+  WD+   +R  M  +G++K PG SW+
Sbjct: 934 QNSSPYVLLSNIYAASGNWDEVNTLRREMREKGVKKLPGCSWI 976



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 104/177 (58%), Gaps = 3/177 (1%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           R D++ D   ++S +  RN ++WN +I+G    G G +A++ F  MR+AGI     T+ S
Sbjct: 276 RLDNASD---LFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGS 332

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           ++ AI  ++    G  +HA   K G  SNV+V + LV MYA CG +  A KVF +++E++
Sbjct: 333 VLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQN 392

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +V WN++L G   +GY+ E ++LF  M+     PD  T+  +LSAC    ++D G Q
Sbjct: 393 VVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQ 449



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 94/179 (52%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + V+ ++  +N + WNA++ G+   G   + ++ F  M+  G   D FT 
Sbjct: 372 YAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTY 431

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+ A   +     G Q+H++I K  + SN+FV N LV MYA  GA+ DA + F  +  
Sbjct: 432 SSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRN 491

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           RD VSWN +++G        EA  LF +M    I PD  +   +LSAC     +++G Q
Sbjct: 492 RDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQ 550



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 98/187 (52%), Gaps = 2/187 (1%)

Query: 6   YSRCDSSLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C + +D+ +  +  +  ++ ++WN+I++     G     +K F  +  +G+  + FT
Sbjct: 104 YAKC-ADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFT 162

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
              ++ +   +   K G+Q+H  + K+G++S  + +  L+ MYA C  + DA  +F    
Sbjct: 163 FAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAV 222

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E D VSW S++ G    G   EAV++F++M+K   +PD   F+ V++A    G +D    
Sbjct: 223 ELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASD 282

Query: 185 YFYLMRN 191
            F  M N
Sbjct: 283 LFSRMPN 289



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 116/250 (46%), Gaps = 5/250 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +      + + +  R+ +S NA+IAG+  +   EQA+  F +M   GI+    T 
Sbjct: 574 YAKCGAIDSAHKILACMPERSVVSMNALIAGYAQINL-EQAVNLFRDMLVEGINSTEITF 632

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYD-SNVFVQNRLVFMYAICGAINDANKVFSSM- 123
            S++ A         G+Q+H+LI K+G    + F+   L+ MY       DA+ +FS   
Sbjct: 633 ASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFS 692

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           + +  V W +++ G + +  S  A+QL+++M+   + PD  TF+  L AC     I  G 
Sbjct: 693 NPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGT 752

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           +   L+ +            +A+V +  + G +  +      MSR      + +++    
Sbjct: 753 ETHSLIFHTGFDSDELTS--SALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGFA 810

Query: 244 VHGNREIAVR 253
            +G  E A+R
Sbjct: 811 KNGYAEDALR 820



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 104/225 (46%), Gaps = 41/225 (18%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+   D ++++      +++SW ++I G+  +G  E+A+K F EM + G + D    
Sbjct: 205 YAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAF 264

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A                                   Y   G +++A+ +FS M  
Sbjct: 265 VTVINA-----------------------------------YVDLGRLDNASDLFSRMPN 289

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++V+WN ++ G A  GY  EA++ F+ M+K  IK   +T   VLSA      +D GL  
Sbjct: 290 RNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGL-- 347

Query: 186 FYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSR 228
             L+  +A  +   +  Y  +++V +  + G +  A+   ++++ 
Sbjct: 348 --LVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNE 390



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 99/217 (45%), Gaps = 4/217 (1%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           K +HA   K+G+ S   + N +V +YA C  ++ A + F  ++++D+++WNS+L   +  
Sbjct: 79  KIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQ 138

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAE 201
           G+    V+ F  +  + + P+  TF +VLS+C     +  G Q    +           E
Sbjct: 139 GFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCE 198

Query: 202 HYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDL 261
              A++G+  +  FL +A S  +        S + +++      G  E AV+  + +  +
Sbjct: 199 --GALIGMYAKCNFLTDARSIFDGAVELDKVS-WTSMIGGYIKVGLPEEAVKVFQEMEKV 255

Query: 262 WPN-DPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
               D   +V + N        D+A D+ + M NR +
Sbjct: 256 GQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNV 292



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 17/175 (9%)

Query: 6   YSRCDSSLDFQNVYSSV-RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C        V+  + R ++ ISWN++I GF   G  E AL+ F EM+Q+ +  D  T
Sbjct: 777 YAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVT 836

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVF-VQNR------LVFMYAICGAINDAN 117
              ++ A        EG+    LIF +    N++ +Q R      +V +    G++ +A 
Sbjct: 837 FLGVLTACSHSGRVSEGR----LIFDMMV--NLYGMQPRADHCACMVDLLGRWGSLKEAE 890

Query: 118 KVFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           +  + ++ E D   W ++L  C  HG      Q  E++   E++P  ++  V+LS
Sbjct: 891 EFINKLNFEPDAKVWATMLGACRIHGDDIRGQQAAEKL--IELEPQNSSPYVLLS 943


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 107/291 (36%), Positives = 172/291 (59%), Gaps = 3/291 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID--IDYFTITSIVGAIGVI 75
           V++ +  RN +SW+A+IA +   G   +AL+ F EM     D   +  T+ S++ A   +
Sbjct: 239 VFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASL 298

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  ++G+ +H  I + G DS + V + LV MY  CG ++   +VF  M +RD+VSWNSL+
Sbjct: 299 AALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLI 358

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
                HGY R+A+Q+FE+M      P   TF+ VL AC H G +++G + F  M  D  +
Sbjct: 359 SSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGI 418

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           + P+ EHY  +V LLGRA  L+EA   +  M   PGP V+ +LL +C++HGN E+A R++
Sbjct: 419 K-PQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERAS 477

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +R+  L P +   YVLL+++      WD+   ++ L+ +RG++K PG  W+
Sbjct: 478 RRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWM 528



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 135/258 (52%), Gaps = 16/258 (6%)

Query: 12  SLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVG 70
           S+D+ + V+   R R    WNA+       G GE+ L  + +M + G++ D FT T ++ 
Sbjct: 127 SVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLK 186

Query: 71  AI----GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
           A            +GK++HA + + GY+S+V++   LV MYA  G ++ A+ VF+ M  R
Sbjct: 187 ACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVR 246

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK---PDGTTFLVVLSACCHAGFIDKG- 182
           ++VSW++++   A +G + EA++ F +M  TE K   P+  T + VL AC     +++G 
Sbjct: 247 NVVSWSAMIACYAKNGKAFEALRTFREMM-TETKDSSPNSVTMVSVLQACASLAALEQGR 305

Query: 183 -LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            +  + L R   S+ P      +A+V + GR G L+  +   + M      S + +L+S+
Sbjct: 306 LIHGYILRRGLDSILPV----ISALVTMYGRCGKLDVGQRVFDRMHDRDVVS-WNSLISS 360

Query: 242 CQVHGNREIAVRSAKRVL 259
             VHG    A++  + +L
Sbjct: 361 YGVHGYGRKAIQIFEEML 378



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 12/220 (5%)

Query: 12  SLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA 71
           S+   N+  S     +IS N +I   C  G  +QAL+  S+           T   ++  
Sbjct: 31  SVALNNLSISSGAGAKISNNQLIQSLCKEGKLKQALRVLSQESSPSQQ----TYELLILC 86

Query: 72  IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
            G  S   +G ++H  I   G D + F+  +L+ MY+  G+++ A KVF    +R +  W
Sbjct: 87  CGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVW 146

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC----CHAGFIDKGLQ-YF 186
           N+L       G+  E + L+ +M +  ++ D  T+  VL AC    C A  + KG + + 
Sbjct: 147 NALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHA 206

Query: 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           +L R   +         T +V +  R G ++ A    N M
Sbjct: 207 HLTRRGYN---SHVYIMTTLVDMYARFGCVDYASYVFNGM 243



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 2/168 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y RC      Q V+  +  R+ +SWN++I+ +   G G +A++ F EM   G     
Sbjct: 327 VTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTP 386

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T  S++GA       +EGK++   +++  G    V     +V +      +++A K+  
Sbjct: 387 VTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQ 446

Query: 122 SM-DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
            M  E     W SLL  C  HG    A +   ++   E K  G   L+
Sbjct: 447 DMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLL 494


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 176/304 (57%), Gaps = 2/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    D + V+     ++ + WN++ +G+      E+A K +S+++ +    + 
Sbjct: 487 IDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNE 546

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  ++  A  +++    G+Q H  + K+G +S+ F+ N LV MYA CG++ +A K+FSS
Sbjct: 547 FTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSS 606

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              +D   WNS++   A HG   EA+++FE M    I P+  TF+ VLSAC H GF++ G
Sbjct: 607 SVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDG 666

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           LQ++  M     +EP   EHY ++V LLGRAG L EA  FI  M+  P   V+++LLSAC
Sbjct: 667 LQHYNSMAR-YGIEPG-IEHYASVVTLLGRAGRLTEAREFIEKMTIRPAALVWRSLLSAC 724

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +V GN E+A  +A+  + + P D   YV+LSN+  +   W D   +R  M   G+ K+PG
Sbjct: 725 RVFGNVELAKHAAEMAISIDPMDSGSYVMLSNIFASKGMWGDVKRLRLKMDVNGVVKEPG 784

Query: 303 YSWV 306
            SW+
Sbjct: 785 QSWI 788



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 118/228 (51%), Gaps = 5/228 (2%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID- 59
           L + +Y +  S  D   ++  +  RN +SW+++++ +  LG  E+AL  F E ++  +D 
Sbjct: 80  LLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDK 139

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           ++ + + SI+ A     G + G Q+H+ + K G+  +V+V   LV +YA  G I+ A  V
Sbjct: 140 LNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLV 199

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  +  +  V+W +++ G    G S  ++QLF  M ++ + PD      +L+AC   G++
Sbjct: 200 FDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYL 259

Query: 180 DKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
             G Q + Y++R++  ++      Y  ++    + G +   ++  + +
Sbjct: 260 KGGKQIHAYVLRSETKMD---VSTYNVLIDFYTKCGRVKAGKALFDRL 304



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 120/249 (48%), Gaps = 5/249 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C++  D + V+  V   + + +NA+I G+   G    AL+ F EMR   +   + T 
Sbjct: 389 YSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTF 448

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++G    +   +  KQ+H LI K G+  + F  + L+ +Y+ C  I DA  VF     
Sbjct: 449 VSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTN 508

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+V WNSL  G      S EA +L+  +Q +  +P+  TF  + +A      +  G Q+
Sbjct: 509 KDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQF 568

Query: 186 F-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
              +M+     +P       A+V +  + G + EAE   +S S     + + +++S    
Sbjct: 569 HNQVMKMGLESDPFIT---NALVDMYAKCGSVEEAEKIFSS-SVWKDTACWNSMISMYAQ 624

Query: 245 HGNREIAVR 253
           HG  E A+R
Sbjct: 625 HGKVEEALR 633



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 86/167 (51%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  +  ++W AII G+   G  E +L+ F+ M ++ +  D + ++SI+ A  V+  
Sbjct: 199 VFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGY 258

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K GKQ+HA + +     +V   N L+  Y  CG +     +F  +D ++++SW +++ G
Sbjct: 259 LKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAG 318

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
              + Y  EAV+L  +M +   KPD      VL++C     +  G Q
Sbjct: 319 YMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQ 365



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 90/162 (55%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + ++  +  +N ISW  +IAG+       +A++   EM + G   D +  
Sbjct: 288 YTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYAC 347

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ + G +   + G+Q+H+ + K+  + + FV N L+ MY+ C A++DA +VF  +  
Sbjct: 348 SSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTC 407

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
             +V +N+++ G +  GY   A+++F++M+   + P   TF+
Sbjct: 408 HSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFV 449



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 85/174 (48%), Gaps = 6/174 (3%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           +++H  +   G   +VF+ N L+  Y   G++ DA  +F  M  R+LVSW+S++      
Sbjct: 60  RKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQL 119

Query: 142 GYSREAVQLFEQMQKTEI-KPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPR 199
           GY+ +A+  F + Q+T + K +      ++ AC      + G Q + Y++++    +   
Sbjct: 120 GYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYV 179

Query: 200 AEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
               T++V L  + G +++A    + +     P  + A+++     G  E++++
Sbjct: 180 G---TSLVVLYAKHGEIDKARLVFDGLVLKT-PVTWTAIITGYTKSGRSEVSLQ 229


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 113/298 (37%), Positives = 173/298 (58%), Gaps = 2/298 (0%)

Query: 10  DSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           D +L+ F+         N +SW +IIAG    G   +AL+ F EM+ AG+  ++ TI S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           + A G I+    G+  H    ++    NV V + L+ MYA CG IN +  VF+ M  ++L
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNL 454

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL 188
           V WNSL+ G + HG ++E + +FE + +T +KPD  +F  +LSAC   G  D+G +YF +
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514

Query: 189 MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
           M  +  ++ PR EHY+ +V LLGRAG L EA   I  M   P   V+ ALL++C++  N 
Sbjct: 515 MSEEYGIK-PRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573

Query: 249 EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++A  +A+++  L P +P  YVLLSN+  A   W +   IR  M + G++K PG SW+
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWI 631



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 89/184 (48%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +YS  +   D   V  S+      S++++I          Q++  FS M   G+  D 
Sbjct: 57  IASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDS 116

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             + ++      +S FK GKQ+H +    G D + FVQ  +  MY  CG + DA KVF  
Sbjct: 117 HVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDR 176

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ++D+V+ ++LL   A  G   E V++  +M+ + I+ +  ++  +LS    +G+  + 
Sbjct: 177 MSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEA 236

Query: 183 LQYF 186
           +  F
Sbjct: 237 VVMF 240



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 35/183 (19%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N +SWN I++GF   G  ++A+  F ++   G   D  T++S++ ++G       G+ +H
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275

Query: 86  ALIFKIGYDSNVFVQNRLVFMYA---------------------IC----------GAIN 114
             + K G   +  V + ++ MY                      +C          G ++
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335

Query: 115 DANKVFSSMDER----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
            A ++F    E+    ++VSW S++ GCA +G   EA++LF +MQ   +KP+  T   +L
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395

Query: 171 SAC 173
            AC
Sbjct: 396 PAC 398



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 2/135 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      Q V++ + T+N + WN+++ GF   G  ++ +  F  + +  +  D+ + 
Sbjct: 433 YAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISF 492

Query: 66  TSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           TS++ A G +    EG K    +  + G    +   + +V +    G + +A  +   M 
Sbjct: 493 TSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMP 552

Query: 125 -ERDLVSWNSLLLGC 138
            E D   W +LL  C
Sbjct: 553 FEPDSCVWGALLNSC 567



 Score = 37.4 bits (85), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 44/102 (43%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           Q HA I K G  ++ ++  +L+  Y+     NDA+ V  S+ +  + S++SL+       
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
              +++ +F +M    + PD      +   C        G Q
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQ 137


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 182/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+   +   + V+SS+  +N ++WN++I+ +   G  E ++    ++ Q G  +D  +I
Sbjct: 491 YSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSI 550

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++ A+  ++   +GK +HA   ++   S++ V+N L+ MY  CG +  A  +F +M  
Sbjct: 551 TTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPR 610

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+LV+WNS++ G   HG   EAV+LF++M+++E  PD  TFL ++++C H+G +++GL  
Sbjct: 611 RNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNL 670

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LMR +  +E PR EHY ++V LLGRAG L++A SFI  M  +   SV+  LL AC+ H
Sbjct: 671 FQLMRIEYGVE-PRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAH 729

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+    A  +L + P   + YV L N+    + WD A ++R  M  RG++K PG SW
Sbjct: 730 RNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSW 789

Query: 306 V 306
           +
Sbjct: 790 I 790



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 130/259 (50%), Gaps = 7/259 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++  S  D + V+  V  +     NA+I+ F   G    AL  +++M+     +D 
Sbjct: 286 LTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDS 345

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FTI+S++    V+  +  G+ +HA + K    SNV +Q+ L+ MY  CG+  DA+ VF +
Sbjct: 346 FTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYT 405

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ERD+V+W S++ G   +   ++A+ LF  M+K  +K D      V+S    AG   + 
Sbjct: 406 MKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVIS----AGLGLEN 461

Query: 183 LQYFYLMRNDASLEPPRAEHYTA--IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           ++  +L+   A      ++ + A  +V +  + GF   AE   +SM  N     + +++S
Sbjct: 462 VELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMP-NKNLVAWNSMIS 520

Query: 241 ACQVHGNREIAVRSAKRVL 259
               +G  E+++    ++L
Sbjct: 521 CYSWNGLPEMSINLLPQIL 539



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 134/279 (48%), Gaps = 7/279 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C S+ D  +V+ +++ R+ ++W ++IAGFC     + AL  F  M + G+  D 
Sbjct: 387 LTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADS 446

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             +TS++ A   +   + G  +H    K G +S+VFV   LV MY+  G    A  VFSS
Sbjct: 447 DVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSS 506

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  ++LV+WNS++   + +G    ++ L  Q+ +     D  +   VL A      + KG
Sbjct: 507 MPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKG 566

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
              + Y +R      P   +   A++ +  + G L  A+    +M R      + ++++ 
Sbjct: 567 KTLHAYQIRLQI---PSDLQVENALIDMYVKCGCLKYAQLIFENMPRR-NLVTWNSMIAG 622

Query: 242 CQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
              HGN E AVR  K +   +  P++     L+++ S +
Sbjct: 623 YGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHS 661



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 1/178 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS C   ++  +++  +  R N ++WN +I GF   G  E++L+ +S  +     +   +
Sbjct: 187 YSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSAS 246

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            T    A         G+Q+H  + K+ +  + +V   L+ MYA  G++ DA KVF  + 
Sbjct: 247 FTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVL 306

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++++   N+++     +G + +A+ L+ +M+  E   D  T   +LS C   G  D G
Sbjct: 307 DKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFG 364



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 5/146 (3%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +  YS  +T    S N+ I      G   QAL+  S+   + +    FT  S++     +
Sbjct: 9   RKFYSLRQTEVSPSINSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASL 68

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER-----DLVS 130
           S    G+ +HA I  +G  S+ ++   L+ MY  CG +  A +VF  M E      D+  
Sbjct: 69  SNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITV 128

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQK 156
           WN ++ G   +G+  E +  F +MQ+
Sbjct: 129 WNPVIDGYFKYGHFEEGLAQFCRMQE 154



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 20/156 (12%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN +I G+   G  E+ L  F  M++                   +S +  G+Q+H  I 
Sbjct: 129 WNPVIDGYFKYGHFEEGLAQFCRMQE-------------------LSWYMAGRQIHGYII 169

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER-DLVSWNSLLLGCAHHGYSREAV 148
           +  ++ + +++  L+ MY+ C    +A  +F  ++ R ++V+WN ++ G   +G   +++
Sbjct: 170 RNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSL 229

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +L+   +    K    +F    +AC H   +D G Q
Sbjct: 230 ELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQ 265


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 183/304 (60%), Gaps = 4/304 (1%)

Query: 6   YSRCDSS-LDFQNVYSSVRTRNQISWNAIIAGFCNLGS-GEQALKCFSEMRQAGIDIDYF 63
           YS+C    LD + V+  +   + + WN +I+G+       ++AL+CF +++  G   D  
Sbjct: 285 YSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDC 344

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSS 122
           ++  ++ A   +S   +G+Q+H L  K+   SN + V N L+ MY+ CG + DA  +F +
Sbjct: 345 SLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDT 404

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E + VS+NS++ G A HG   +++ LF++M +    P   TF+ VL+AC H G ++ G
Sbjct: 405 MPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDG 464

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF +M+    +EP  A H++ ++ LLGRAG L+EAE  I ++  +PG   + ALL AC
Sbjct: 465 KIYFNMMKQKFGIEP-EAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGAC 523

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN E+A+++A R+L L P + A YV+L+N+        DA  +R LM +RG++KKPG
Sbjct: 524 RIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPG 583

Query: 303 YSWV 306
            SW+
Sbjct: 584 CSWI 587



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 125/241 (51%), Gaps = 8/241 (3%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R+++SWN+++  +     G +AL+ + EM   G+ +D FT+ S++ A   +     G Q 
Sbjct: 203 RDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQF 262

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGA-INDANKVFSSMDERDLVSWNSLLLGCA-HHG 142
           HA + K GY  N  V + L+ +Y+ CG  + D  KVF  +   DLV WN+++ G + +  
Sbjct: 263 HAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYED 322

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP--RA 200
            S EA++ F Q+Q    +PD  + + V+SAC +     +G Q   L      L+ P  R 
Sbjct: 323 LSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLA---LKLDIPSNRI 379

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260
               A++ +  + G L +A++  ++M  +   S Y ++++    HG    ++   +R+L+
Sbjct: 380 SVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVS-YNSMIAGYAQHGMGFQSLHLFQRMLE 438

Query: 261 L 261
           +
Sbjct: 439 M 439



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 3/171 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
             ++  +   + +S+N +IA +   G  + A + F EMR+A +D+D FT++ I+ A G+ 
Sbjct: 94  HQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGIN 153

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-RDLVSWNSL 134
            G    +Q+HAL    G DS V V N L+  Y+  G + +A ++F  + E RD VSWNS+
Sbjct: 154 VGLI--RQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSM 211

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++    H    +A++L+ +M    +  D  T   VL+A  +   +  GLQ+
Sbjct: 212 VVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQF 262



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 29/184 (15%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +F   +D NVF  N L+  YA    +  A+++F  M + D VS+N+L+   A  G ++ A
Sbjct: 65  VFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPA 124

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSAC---------CHAGFIDKGLQYFYLMRNDASLEPP 198
            QLF +M++  +  DG T   +++AC          HA  +  GL  +  + N       
Sbjct: 125 FQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGN------- 177

Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258
                 A++    + GFL EA    + +S +     + +++ A   H       R   + 
Sbjct: 178 ------ALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQH-------REGSKA 224

Query: 259 LDLW 262
           L+L+
Sbjct: 225 LELY 228



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + GK +HAL  K    ++ ++ N  + +Y+ C  ++ A +VF    + ++ S+N+L+  
Sbjct: 24  LRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLISA 83

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
            A   Y   A QLF++M     +PD  ++  +++A    G      Q F  MR 
Sbjct: 84  YAKESYVEVAHQLFDEMP----QPDSVSYNTLIAAYARRGDTQPAFQLFLEMRE 133



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 2/149 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C +  D + ++ ++   N +S+N++IAG+   G G Q+L  F  M + G     
Sbjct: 386 IAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTN 445

Query: 63  FTITSIVGAIGVISGFKEGK-QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T  S++ A       ++GK   + +  K G +      + ++ +    G +++A ++  
Sbjct: 446 ITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIE 505

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQ 149
           ++  +     W++LL  C  HG    A++
Sbjct: 506 TIPFDPGFFFWSALLGACRIHGNVELAIK 534


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 176/305 (57%), Gaps = 3/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S    + ++  +  +  I+WNA+I+G+   G     L+ + +M+ +G+  D 
Sbjct: 198 ITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDP 257

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ +   +   K G ++  L+   G+  NVFV N  + MYA CG +  A  VF  
Sbjct: 258 FTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDI 317

Query: 123 MDERDLVSWNSLLLGC-AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           M  + LVSW +++ GC   HG     + LF+ M K  I+PDG  F++VLSAC H+G  DK
Sbjct: 318 MPVKSLVSWTAMI-GCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDK 376

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           GL+ F  M+ +  LEP   EHY+ +V LLGRAG L+EA  FI SM   P  +V+ ALL A
Sbjct: 377 GLELFRAMKREYKLEPG-PEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGA 435

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++H N ++A  +  +V++  PN+   YVL+SN+   +   +    IR +M  R  RKKP
Sbjct: 436 CKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKP 495

Query: 302 GYSWV 306
           GYS+V
Sbjct: 496 GYSYV 500



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 144/304 (47%), Gaps = 9/304 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQIS--WNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           I  Y +C    D + V+      +Q+S  +NA+I+G+        A   F  M++ G+ +
Sbjct: 95  ISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSV 154

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D  T+  +V    V      G+ +H    K G DS V V N  + MY  CG++    ++F
Sbjct: 155 DSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLF 214

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M  + L++WN+++ G + +G + + ++L+EQM+ + + PD  T + VLS+C H G   
Sbjct: 215 DEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKK 274

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
            G +   L+ ++  +  P      A + +  R G L +A +  + M      S + A++ 
Sbjct: 275 IGHEVGKLVESNGFV--PNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVS-WTAMIG 331

Query: 241 ACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
              +HG  EI +     ++   + P D A++V++ +    +   D   ++   M  R  +
Sbjct: 332 CYGMHGMGEIGLMLFDDMIKRGIRP-DGAVFVMVLSACSHSGLTDKGLELFRAM-KREYK 389

Query: 299 KKPG 302
            +PG
Sbjct: 390 LEPG 393



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 2/156 (1%)

Query: 20  SSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFK 79
           S+V       WN  +          +++  +  M ++G   D F+   I+ +   +S   
Sbjct: 11  SAVAAVASTPWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPV 70

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS--WNSLLLG 137
            G+Q+H  + K G ++  FV   L+ MY  CG + DA KVF    +   +S  +N+L+ G
Sbjct: 71  SGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISG 130

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
              +    +A  +F +M++T +  D  T L ++  C
Sbjct: 131 YTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLC 166


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 103/291 (35%), Positives = 171/291 (58%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  +N ++WN++IAG+      E  LK F  M ++ +  +  +++S++     +
Sbjct: 249 ERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNL 308

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S    G+QMH L+ K     +      L+ MY  CG ++ A K+F  M  +D+++WN+++
Sbjct: 309 SALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMI 368

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG  R+A+ LF++M+   +KPD  TF+ V+ AC HAGF+D G+QYF  M+ +  +
Sbjct: 369 SGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGI 428

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           E  +  HYT ++ LLGRAG L+EA S I  M   P  ++Y  LL AC++H N ++A  +A
Sbjct: 429 E-AKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAA 487

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +L+L P     YV L+N+  AT+ WD    +R +M    + K PGYSW+
Sbjct: 488 RNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWI 538



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 110/248 (44%), Gaps = 27/248 (10%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           ++ +  ++  SWN +I+GF   G  ++A   FS M +           + V    +ISG+
Sbjct: 159 FNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPE----------KNGVSWSAMISGY 208

Query: 79  KEGKQMHA---LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
            E   + A   L   +G  S V V+  ++  Y   G +  A ++F  M  ++LV+WNS++
Sbjct: 209 VEHGDLEAAEELYKNVGMKS-VVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMI 267

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G   +  + + +++F+ M ++ ++P+  +   VL  C +   +  G Q   L+      
Sbjct: 268 AGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKS--- 324

Query: 196 EPPRAEHYTAIVGLLG---RAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
             P ++  TA   L+    + G L+ A      M R      + A++S    HG    A 
Sbjct: 325 --PLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRK-DVITWNAMISGYAQHG----AG 377

Query: 253 RSAKRVLD 260
           R A  + D
Sbjct: 378 RKALHLFD 385



 Score = 44.3 bits (103), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 37/69 (53%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C        ++  +  ++ I+WNA+I+G+   G+G +AL  F +MR   +  D+
Sbjct: 337 ISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDW 396

Query: 63  FTITSIVGA 71
            T  +++ A
Sbjct: 397 ITFVAVILA 405



 Score = 40.4 bits (93), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 24/159 (15%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG----KQ 83
           +S N  IA F      E A   F +M          ++ + V    ++SG+ +     K+
Sbjct: 74  VSLNKTIASFVRACDLESARNVFEKM----------SVRTTVTWNTMLSGYTKVAGKVKE 123

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
            H L  KI    +V   N ++  Y     +  A   F+ M  +D+ SWN+L+ G A +G 
Sbjct: 124 AHELFDKIPEPDSV-SYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQ 182

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            ++A  LF  M +     +G ++  ++S     G+++ G
Sbjct: 183 MQKAFDLFSVMPEK----NGVSWSAMIS-----GYVEHG 212


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C + L+ + V++ ++T+N +SW AI+A +   G  E+AL  F EM   G+  + +T 
Sbjct: 275 YGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTF 334

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ +   IS    GK +H  I K G++ ++ V N L+ MY+  G+I  A+KVF  M  
Sbjct: 335 AVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMIC 394

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD ++W++++ G +HHG  REA+ +F++M   +  P   TF+ VLSAC H G + +G  Y
Sbjct: 395 RDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYY 454

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              +     +EP   EHYT IVGLL +AG L+EAE+F+ S         ++ LLSAC VH
Sbjct: 455 LNQLMKQTGIEPG-VEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVH 513

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +  + A+ VL + P D   Y+LLSN+      WD    IR LM  R ++K+PG SW
Sbjct: 514 QNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASW 573

Query: 306 V 306
           +
Sbjct: 574 I 574



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 130/279 (46%), Gaps = 16/279 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY--- 62
           Y++CD  +  + ++  +R RN +SW A++AG+ + G   + L+ F  M    I +DY   
Sbjct: 72  YAKCDQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTM----ISVDYMRP 127

Query: 63  --FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
             +   +I+ +        EG Q H    K G   + +V+N L+ MY+    +  A  V+
Sbjct: 128 NEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVW 187

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             +   D+ S+N ++ G   +GY  EA+++ ++M    I  D  T++     C H   + 
Sbjct: 188 YEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLR 247

Query: 181 KGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
            GLQ +  + R  A  +   +   +AI+ + G+ G +  A    N +      S + A+L
Sbjct: 248 LGLQVHCRMFRTGAEYDSFVS---SAIIDMYGKCGNILNARKVFNRLQTKNVVS-WTAIL 303

Query: 240 SACQVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVS 276
           +A   +G  E A+       V  L PN+    VLL++ +
Sbjct: 304 AAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCA 342



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSR        +V+  V   +  S+N II G    G   +AL+    M    I  D 
Sbjct: 171 ICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDN 230

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  +  G    +   + G Q+H  +F+ G + + FV + ++ MY  CG I +A KVF+ 
Sbjct: 231 VTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNR 290

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +  +++VSW ++L   + +G   EA+  F +M+   + P+  TF V+L++C
Sbjct: 291 LQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSC 341



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 3/110 (2%)

Query: 78  FKEGKQMHA--LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
            K GK +HA  +I       N+   N L+ +YA C  I  A  +F  M +R++VSW +L+
Sbjct: 41  LKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALM 100

Query: 136 LGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G  H+G   E ++LF+ M   + ++P+   F  ++S+C  +G + +G Q
Sbjct: 101 AGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQ 150


>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
 gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
          Length = 577

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S  D   ++ S    +++S   I+AGF   G  E+A++ F +M +AG +ID   +
Sbjct: 205 YSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNGFEEEAMQFFVKMLEAGTEIDSNMV 264

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++G  G  +    G+Q+H+L+ K  + SN FV N L+ MY+ CG + D+ KVFS M  
Sbjct: 265 SAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGNGLINMYSKCGDLEDSTKVFSRMPC 324

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            + VSWNS++   A HG    A+QL+++M+   ++P   TFL +L AC H G ++KG+++
Sbjct: 325 MNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPTDVTFLSLLHACSHVGLVEKGMEF 384

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M     L  PR EHY  +V +LGRAG LNEA++FI  +   P   V++ALL AC +H
Sbjct: 385 LKSMTEVHKL-TPRMEHYACVVDMLGRAGLLNEAKTFIEGLPIKPDVLVWQALLGACGIH 443

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E+   +A+ ++   P  P+ Y+LL+N+  +   W +       M    + K+ G SW
Sbjct: 444 GDPEMGKYAAEHLILSAPEKPSPYILLANIYSSKGRWKERAKTIKRMKEMCVAKETGISW 503

Query: 306 V 306
           +
Sbjct: 504 I 504



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 5/276 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y +C  S     V+  +  RN I+W AII+G         +L+ F EM    ++ + 
Sbjct: 101 ITSYFKCGFSSSGMQVFDEMLERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNS 160

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S + A   +   +EG Q+H  ++K+G  S+  V++ L+ MY+ CG++ D  ++F S
Sbjct: 161 LTYLSSLMACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFES 220

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             + D VS   +L G A +G+  EA+Q F +M +   + D      VL        +  G
Sbjct: 221 AGQLDKVSMTIILAGFAQNGFEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLG 280

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            Q   L+   +    P   +   ++ +  + G L ++    + M      S + ++++A 
Sbjct: 281 QQIHSLVIKRSFGSNPFVGN--GLINMYSKCGDLEDSTKVFSRMPCMNSVS-WNSMIAAF 337

Query: 243 QVHGN--REIAVRSAKRVLDLWPNDPAIYVLLSNVS 276
             HG+  R + +    R+  + P D     LL   S
Sbjct: 338 ARHGDGSRALQLYKEMRLKGVEPTDVTFLSLLHACS 373



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 11/185 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-DIDYFT 64
           Y++     D   ++  +  R+ +SWN +I+GF   GS +     F +M+  G   +D  T
Sbjct: 2   YAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQAT 61

Query: 65  ITSIVGA-----IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           +T+I+ A     +G ++     K +H L    G+   + V N L+  Y  CG  +   +V
Sbjct: 62  LTTILSACDRPELGFVN-----KMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQV 116

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M ER++++W +++ G       R++++LF +M    ++P+  T+L  L AC     +
Sbjct: 117 FDEMLERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQAL 176

Query: 180 DKGLQ 184
            +G Q
Sbjct: 177 REGCQ 181



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI-KPDGT 164
           MYA  G + DA K+F  M  RD VSWN ++ G    G        F+QMQ     + D  
Sbjct: 1   MYAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQA 60

Query: 165 TFLVVLSAC--CHAGFIDK 181
           T   +LSAC     GF++K
Sbjct: 61  TLTTILSACDRPELGFVNK 79


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 107/291 (36%), Positives = 171/291 (58%), Gaps = 3/291 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID--IDYFTITSIVGAIGVI 75
           V+  +  RN +SW+A+IA +   G   +AL+ F EM +   D   +  T+ S++ A   +
Sbjct: 239 VFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASL 298

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  ++GK +H  I + G DS + V + LV MY  CG +    +VF  M +RD+VSWNSL+
Sbjct: 299 AALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLI 358

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
                HGY ++A+Q+FE+M      P   TF+ VL AC H G +++G + F  M  D  +
Sbjct: 359 SSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGI 418

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           + P+ EHY  +V LLGRA  L+EA   +  M   PGP V+ +LL +C++HGN E+A R++
Sbjct: 419 K-PQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERAS 477

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +R+  L P +   YVLL+++      WD+   ++ L+ +RG++K PG  W+
Sbjct: 478 RRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWM 528



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 134/257 (52%), Gaps = 14/257 (5%)

Query: 12  SLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVG 70
           S+D+ + V+   R R    WNA+       G GE+ L  + +M + G++ D FT T ++ 
Sbjct: 127 SVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLK 186

Query: 71  AI----GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
           A       ++   +GK++HA + + GY S+V++   LV MYA  G ++ A+ VF  M  R
Sbjct: 187 ACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVR 246

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLSACCHAGFIDKG-- 182
           ++VSW++++   A +G + EA++ F +M +   +  P+  T + VL AC     +++G  
Sbjct: 247 NVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKL 306

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           +  + L R   S+ P      +A+V + GR G L   +   + M      S + +L+S+ 
Sbjct: 307 IHGYILRRGLDSILPV----ISALVTMYGRCGKLEVGQRVFDRMHDRDVVS-WNSLISSY 361

Query: 243 QVHGNREIAVRSAKRVL 259
            VHG  + A++  + +L
Sbjct: 362 GVHGYGKKAIQIFEEML 378



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 8/160 (5%)

Query: 27  QISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHA 86
           +IS N +I   C  G  +QA++  S+           T   ++   G  S   +  ++H 
Sbjct: 46  KISNNQLIQSLCKEGKLKQAIRVLSQESSPSQQ----TYELLILCCGHRSSLSDALRVHR 101

Query: 87  LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSRE 146
            I   G D + F+  +L+ MY+  G+++ A KVF    +R +  WN+L       G+  E
Sbjct: 102 HILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEE 161

Query: 147 AVQLFEQMQKTEIKPDGTTFLVVLSAC----CHAGFIDKG 182
            + L+ +M +  ++ D  T+  VL AC    C    + KG
Sbjct: 162 VLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKG 201



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 2/168 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y RC      Q V+  +  R+ +SWN++I+ +   G G++A++ F EM   G     
Sbjct: 327 VTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTP 386

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T  S++GA       +EGK++   +++  G    +     +V +      +++A K+  
Sbjct: 387 VTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQ 446

Query: 122 SM-DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
            M  E     W SLL  C  HG    A +   ++   E K  G   L+
Sbjct: 447 DMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLL 494


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 114/289 (39%), Positives = 169/289 (58%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++ ++ RN +SWN++I G+   G   +AL CF  M+Q G   D  TI   + A   ++ 
Sbjct: 410 MFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAA 469

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G Q+H L  K G+ +++FV+N ++ MYA  G + +A  VF+ +  +D+VSWNSL+ G
Sbjct: 470 LNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAG 529

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G  +EAV+LFE M    I PD  TF  +LSAC H GF+D+GL  F  M    S++ 
Sbjct: 530 YALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIK- 588

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P++EHY  ++ LLGR G L EA   +  M       ++ ALL AC++H N E+A  SA+R
Sbjct: 589 PQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAER 648

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +L L P + + YVLLSN+      WD    +R LM      K+PG SW+
Sbjct: 649 LLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQPGCSWI 697



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +N+++ + T+N +SWNA+I  +      + A K F EM +     D  + T+++     +
Sbjct: 253 RNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEK----DSVSWTAMINGYVRV 308

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               + ++    I  +    N+  Q  ++  Y   G +++AN++FS +  RD V WNS++
Sbjct: 309 GKLLQARE----ILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMI 364

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
            G AH G + EA++LF++M    +  D  ++  +++A   AG +DK L+ F  M+
Sbjct: 365 TGYAHCGRTDEALRLFQEM----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQ 415



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 106/234 (45%), Gaps = 52/234 (22%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++S +  R+ + WN++I G+ + G  ++AL+ F EM    +  D  +  +++ A      
Sbjct: 348 IFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEM----VCKDMVSWNTMIAA------ 397

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
                                        YA  G ++ A ++F+ M ER++VSWNSL+ G
Sbjct: 398 -----------------------------YAQAGQMDKALEMFNEMQERNVVSWNSLITG 428

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-----MRND 192
              +G   EA+  F  M++   KPD TT +  L A  +   ++ G+Q  +L       ND
Sbjct: 429 YVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGND 488

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
             ++        AI+ +  ++G + EAE+    + +N     + +L++   ++G
Sbjct: 489 LFVK-------NAILTMYAKSGRVPEAENVFAEI-KNKDVVSWNSLIAGYALNG 534



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 17/224 (7%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++     + + ++  +  RN +SWN++IAG+ +    E A + F  M +     D 
Sbjct: 53  ISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKR----DI 108

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           ++ T ++     I   ++ +++  L+       +   +N L+  YA      +A K+F  
Sbjct: 109 YSWTLMITCYTRIGELEKARELFNLLPD---KQDTVCRNALIAGYAKKRLFREAKKLFDE 165

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  +++VSWNS+L G   +G  +  +Q FE M +  +     ++ +++      G +D  
Sbjct: 166 MLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNV----VSWNLMVDGYVGVGDLDSA 221

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
             +F        +  P    +  ++      G + EA +  N M
Sbjct: 222 WMFF------KKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEM 259



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 4/102 (3%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +F    + N+   N ++  YA  G I +A ++F  M +R+LVSWNS++ G  H+    +A
Sbjct: 37  VFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDA 96

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
            +LF++M K +I     ++ ++++     G ++K  + F L+
Sbjct: 97  ARLFDRMFKRDI----YSWTLMITCYTRIGELEKARELFNLL 134



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 95/214 (44%), Gaps = 22/214 (10%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  +N +SWN+I++G+   G  +  L+ F  M +  +      +   VG   + 
Sbjct: 160 KKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLD 219

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S +        + FK     NV     ++  +A  G + +A  +F+ M  ++LVSWN+++
Sbjct: 220 SAW--------MFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMI 271

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDA 193
                     +A +LF +M     + D  ++  +++     G + +  +   LM  +N A
Sbjct: 272 GAYVRENQIDDAYKLFMEMP----EKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIA 327

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
           +         TA++    ++G ++EA    + +S
Sbjct: 328 A--------QTAMINGYLQSGRMDEANEIFSQIS 353



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 95  SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
           S VF QN  +      G I +A  VF  M ER++V++NS++   A +G    A +LF+ M
Sbjct: 13  SYVFTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLM 72

Query: 155 QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF-YLMRNDASLEPPRAEHYTAIVGLLGRA 213
            +  +     ++  +++   H   ++   + F  + + D          +T ++    R 
Sbjct: 73  PQRNL----VSWNSMIAGYLHNELVEDAARLFDRMFKRDIY-------SWTLMITCYTRI 121

Query: 214 GFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260
           G L +A    N +          AL++       ++   R AK++ D
Sbjct: 122 GELEKARELFNLLPDKQDTVCRNALIAGYA----KKRLFREAKKLFD 164


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 171/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     D + V+S +  R+ ISWN+++AG+   G   +AL+ F +M  A +       
Sbjct: 251 YAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAF 310

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   ++    GKQ+H  + + G+  N+F+ + LV MY+ CG I  A K+F  M+ 
Sbjct: 311 SSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNL 370

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VSW ++++G A HG+  EAV LFE+M++  +KP+   F+ VL+AC H G +D+   Y
Sbjct: 371 HDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGY 430

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M     L     EHY A+  LLGRAG L EA  FI+ M   P  SV+  LLS+C VH
Sbjct: 431 FNSMTKVYGLN-QELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVH 489

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+A + A+++  +   +   YVL+ N+  +   W +   +R  +  +G+RKKP  SW
Sbjct: 490 KNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSW 549

Query: 306 V 306
           +
Sbjct: 550 I 550



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 138/282 (48%), Gaps = 8/282 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+       + V+  +  ++ +S+N +IAG+   G  E AL+   EM  + +  D FT+
Sbjct: 150 YSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTL 209

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++          +GK++H  + + G DS+V++ + LV MYA    I D+ +VFS +  
Sbjct: 210 SSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYR 269

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RD +SWNSL+ G   +G   EA++LF QM   +++P    F  V+ AC H   +  G Q 
Sbjct: 270 RDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQL 329

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS-ACQ 243
           + Y++R         A   +A+V +  + G +  A    + M+ +   S    ++  A  
Sbjct: 330 HGYVLRGGFGRNIFIA---SALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALH 386

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLL---SNVSKATDCW 282
            HG+  +++    +   + PN  A   +L   S+V    + W
Sbjct: 387 GHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAW 428



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 84/153 (54%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+ ++ +   ++W ++I  F +     +AL  F EMR +G   D+    S++ +  ++  
Sbjct: 61  VFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMD 120

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G+ +H  I ++G D +++  N L+ MY+    I+   KVF  M  +D+VS+N+++ G
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAG 180

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
            A  G   +A+++  +M  +++KPD  T   VL
Sbjct: 181 YAQSGMYEDALRMVREMGTSDLKPDAFTLSSVL 213


>gi|91805879|gb|ABE65668.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 520

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 180/295 (61%), Gaps = 3/295 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLG-SGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           D + ++++ + ++ + +NA++ GF   G + ++++  +  M++AG   +  T  S++GA 
Sbjct: 224 DAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGAC 283

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
            V++  + G+Q+HA I K G  +++ + + L+ MYA CG INDA +VF  M E+++ SW 
Sbjct: 284 AVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWT 343

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           S++ G   +G   EA++LF +M++  I+P+  TFL  LSAC H+G +DKG + F  M+ D
Sbjct: 344 SMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRD 403

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            S++ P+ EHY  IV L+GRAG LN+A  F  +M   P   ++ ALLS+C +HGN E+A 
Sbjct: 404 YSMK-PKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCNLHGNVELAS 462

Query: 253 RSAKRVLDLWPND-PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +A  +  L  +  P  Y+ LSNV  + D WD+   IR +M  R I K  G SW 
Sbjct: 463 IAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKRRRISKTIGRSWT 517



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 55/99 (55%)

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           K GK++HA I K G+  ++ +  +L+ ++  CG ++ A +VF  + +  L ++N ++ G 
Sbjct: 51  KAGKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGY 110

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
             HG  +E + L ++M  +  K DG T  +VL A    G
Sbjct: 111 LKHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRG 149



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 112/278 (40%), Gaps = 42/278 (15%)

Query: 58  IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
           +++D   IT++V    V SG  E  +    +F+   D NV     ++  Y   G + DA 
Sbjct: 171 VELDDVLITALVDTY-VKSGKLESART---VFETMKDENVVCCTSMISGYMNQGFVEDAE 226

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYS-REAVQLFEQMQKTEIKPDGTTFLVVLSACC-- 174
           ++F++   +D+V +N+++ G +  G + + +V ++  MQ+    P+ +TF  V+ AC   
Sbjct: 227 EIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGACAVL 286

Query: 175 ---------HAGFIDKGLQYFYLMR-------------NDA-----SLEPPRAEHYTAIV 207
                    HA  +  G+     M              NDA      ++      +T+++
Sbjct: 287 TSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMI 346

Query: 208 GLLGRAGFLNEAESFINSMSR---NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
              G+ G   EA      M      P    +   LSAC   G     V     + +    
Sbjct: 347 DGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSG----LVDKGYEIFESMQR 402

Query: 265 DPAIYVLLSNVSKATDCWDDAGDI-RTLMYNRGIRKKP 301
           D ++   + + +   D    AGD+ +   + R + ++P
Sbjct: 403 DYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERP 440



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 24/150 (16%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D + V+  ++ +N  SW ++I G+   G+ E+AL+ F+ M++  I+ +Y T 
Sbjct: 318 YAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVT- 376

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQ---------NRLVFMYAICGAINDA 116
              +GA+   S        H+ +   GY+    +Q              +  + G   D 
Sbjct: 377 --FLGALSACS--------HSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDL 426

Query: 117 NKVFS---SMDER-DLVSWNSLLLGCAHHG 142
           NK F    +M ER D   W +LL  C  HG
Sbjct: 427 NKAFEFARAMPERPDSDIWAALLSSCNLHG 456


>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 831

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 177/303 (58%), Gaps = 3/303 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQ-ALKCFSEMRQAGIDID 61
           I  YS+C      ++V+S +   + + WN++IAGF ++ S EQ AL CF  MRQ G    
Sbjct: 460 INVYSKCGKMEVSKHVFSKLSELDVVCWNSMIAGF-SINSLEQDALACFKRMRQFGFFPS 518

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            F+  +I  +   +S   +G+Q+HA I K GY  NVFV + LV MY  CG +  A   F 
Sbjct: 519 EFSFATIASSCAKLSSLFQGQQIHAQIIKDGYVDNVFVGSSLVEMYCKCGDVGAARYYFD 578

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M  +++V+WN ++ G AH+GY  EAV L++ M  +  KPD  TF+ VL+AC H+  +D+
Sbjct: 579 MMPGKNIVTWNEMIHGYAHNGYGLEAVSLYKDMISSGEKPDDITFVAVLTACSHSALVDE 638

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G++ F  M     +  P+ +HYT I+  LGR G  NE E  +++M       V++ +LS+
Sbjct: 639 GVEIFSSMLQKFEV-VPKLDHYTCIIDCLGRVGRFNEVEVILDTMPYKDDTIVWEVVLSS 697

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+VH N  +A R+A+ +  L P + A YVLL+N+  +   WDDA  +R LM +  I K P
Sbjct: 698 CRVHANVSLAKRAAEELHRLNPRNSAPYVLLANMYSSMGRWDDAQVVRDLMSDNQIHKDP 757

Query: 302 GYS 304
           GYS
Sbjct: 758 GYS 760



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 126/252 (50%), Gaps = 21/252 (8%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C  + D   V+  +   N++++  ++ G       ++ L+ F  M + GI +D  ++
Sbjct: 183 YTKCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSL 242

Query: 66  TSI--VGAIGV----------ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113
           ++I  + A GV          +S   +GKQ+H L  K G++ ++ + N L+ MYA  G +
Sbjct: 243 STILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDM 302

Query: 114 NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           + A  VF ++D+  +VSWN ++ G  +   S +A++ F++MQ    +PD  T++ +L+AC
Sbjct: 303 DSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINMLTAC 362

Query: 174 CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS---RNP 230
             +G +  G Q F  M +      P    + AI+    ++    EA      M    +NP
Sbjct: 363 VKSGDVKVGRQIFDCMSS------PSLISWNAILSGYNQSADHGEAVELFRKMQFQWQNP 416

Query: 231 GPSVYKALLSAC 242
             +    +LS+C
Sbjct: 417 DRTTLAIILSSC 428



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 95/169 (56%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  + + + ISWNAI++G+       +A++ F +M+    + D  T+  I+ +   +
Sbjct: 372 RQIFDCMSSPSLISWNAILSGYNQSADHGEAVELFRKMQFQWQNPDRTTLAIILSSCAEL 431

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + GKQ+HA+  K+G+  +V+V + L+ +Y+ CG +  +  VFS + E D+V WNS++
Sbjct: 432 GLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKLSELDVVCWNSMI 491

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G + +   ++A+  F++M++    P   +F  + S+C     + +G Q
Sbjct: 492 AGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSSLFQGQQ 540



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 32/200 (16%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM------------ 53
           YS+C+      +V+  +  +N  S+NAI++ FC   + + A + F +M            
Sbjct: 50  YSKCNQITSAHHVFDKIPHKNIFSYNAILSAFCKSNNLQYACRLFLQMPERNTVSLNTII 109

Query: 54  ---------RQA-----------GIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY 93
                    RQA            +   + T  ++  A G +     G++ H L+ K+G+
Sbjct: 110 TTMVKNGYERQALDTYDLMMVYESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGF 169

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           DSN++V N L+ MY  CG   DA +VF  + E + V++ +++ G +     +E ++LF  
Sbjct: 170 DSNIYVSNALLCMYTKCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRL 229

Query: 154 MQKTEIKPDGTTFLVVLSAC 173
           M +  I  D  +   +L  C
Sbjct: 230 MLRKGICVDSVSLSTILVIC 249



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 32/125 (25%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS------------------ 122
            K +HA IF+    S+ F+ N L+ +Y+ C  I  A+ VF                    
Sbjct: 24  AKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDKIPHKNIFSYNAILSAFCK 83

Query: 123 -------------MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLV 168
                        M ER+ VS N+++     +GY R+A+  ++ M   E +KP   TF  
Sbjct: 84  SNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMMVYESVKPSHITFAT 143

Query: 169 VLSAC 173
           V SAC
Sbjct: 144 VFSAC 148


>gi|297818116|ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322779|gb|EFH53200.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 652

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 105/299 (35%), Positives = 174/299 (58%), Gaps = 12/299 (4%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D  +++ S++ ++ +SWN+I+ GF   G  E A+K F  +R + I++D +  ++++ +  
Sbjct: 306 DALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFSAVLRSCS 365

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER-DLVSWN 132
            ++  + G+Q HAL  K  ++SN FV + L+ MY+ CG I +A K F  +  + + ++WN
Sbjct: 366 DLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENARKCFEQISSKHNTIAWN 425

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           +++LG A HG  + ++ LF QM    +K D  TF  +L+AC H G I +GL+        
Sbjct: 426 AMILGYAQHGSGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELL------ 479

Query: 193 ASLEP-----PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN 247
            S+EP     PR EHY A V LLGRAG +N+ +  I SM  NP P V K  L  C+  G 
Sbjct: 480 NSMEPVYKIQPRMEHYAAAVDLLGRAGLVNKVKELIESMPLNPDPMVLKTFLGVCRACGE 539

Query: 248 REIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            E+A + A  +L++ P D   YV LS++      W++  +++ +M  RG++K PG+SW+
Sbjct: 540 IEMATQVANHLLEIEPEDHFAYVSLSHMYSDLKKWEEKANVKKMMKERGVKKVPGWSWI 598



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 123/253 (48%), Gaps = 5/253 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I +Y+ C    D + V+  +  +++ ISWN++IAG       E A + F+EM +  I+ D
Sbjct: 191 ISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFELFTEMHRNWIETD 250

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA--ICGAINDANKV 119
            +T T IV A         GK +H L+ K G +    V N L+ MY     G + DA  +
Sbjct: 251 IYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQFPTGVMKDALSL 310

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F S+  +DLVSWNS++ G + +G S +AV+ F  ++ + I+ D   F  VL +C     +
Sbjct: 311 FESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFSAVLRSCSDLATL 370

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
             G Q  + +   +S E       ++++ +  + G +  A      +S       + A++
Sbjct: 371 QLG-QQTHALATKSSFESNEFV-TSSLILMYSKCGVIENARKCFEQISSKHNTIAWNAMI 428

Query: 240 SACQVHGNREIAV 252
                HG+ ++++
Sbjct: 429 LGYAQHGSGQVSL 441



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 13/192 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFT 64
           Y++C+   D    +  +   N +SWNA+IAGF  +   + A      M  +A + +D  T
Sbjct: 92  YAKCERVEDAFGAFMEILEPNSVSWNALIAGFVQVRDTKTAFWLLGLMEMKAAVTMDDGT 151

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM- 123
              ++  +         KQ+HA + K+G +  + + N ++  YA CG ++DA +VF  + 
Sbjct: 152 FAPLLTLLDDPMFCNLLKQVHAKVLKLGLEHEITICNAMISSYANCGLVSDAKRVFDGLG 211

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC--------- 174
             +DL+SWNS++ G + H     A +LF +M +  I+ D  T+  ++SAC          
Sbjct: 212 GSKDLISWNSMIAGLSKHEQKESAFELFTEMHRNWIETDIYTYTGIVSACSGEEHQSFGK 271

Query: 175 --HAGFIDKGLQ 184
             H   I KGL+
Sbjct: 272 SLHGLVIKKGLE 283



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 85/155 (54%), Gaps = 1/155 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ +SWN +I+G+ + G  E +   F++M++ G  +D ++ + ++  I     
Sbjct: 3   LFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCYVDGYSFSRLLKGIASAKR 62

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F  G+Q+H L+ K GY+ NV+V + LV MYA C  + DA   F  + E + VSWN+L+ G
Sbjct: 63  FDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNALIAG 122

Query: 138 CAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLS 171
                 ++ A  L   M+ K  +  D  TF  +L+
Sbjct: 123 FVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLT 157


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/298 (37%), Positives = 173/298 (58%), Gaps = 2/298 (0%)

Query: 10  DSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           D +L+ F+         N +SW +IIAG    G   +AL+ F EM+ AG+  ++ TI S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           + A G I+    G+  H    ++    NV V + L+ MYA CG IN +  VF+ M  ++L
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNL 454

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL 188
           V WNSL+ G + HG ++E + +FE + +T +KPD  +F  +LSAC   G  D+G +YF +
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514

Query: 189 MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
           M  +  ++ PR EHY+ +V LLGRAG L EA   I  M   P   V+ ALL++C++  N 
Sbjct: 515 MSEEYGIK-PRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573

Query: 249 EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++A  +A+++  L P +P  YVLLSN+  A   W +   IR  M + G++K PG SW+
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWI 631



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 89/184 (48%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +YS  +   D   V  S+      S++++I          Q++  FS M   G+  D 
Sbjct: 57  IASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDS 116

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             + ++      +S FK GKQ+H +    G D + FVQ  +  MY  CG + DA KVF  
Sbjct: 117 HVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDR 176

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ++D+V+ ++LL   A  G   E V++  +M+ + I+ +  ++  +LS    +G+  + 
Sbjct: 177 MSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEA 236

Query: 183 LQYF 186
           +  F
Sbjct: 237 VVMF 240



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 35/183 (19%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N +SWN I++GF   G  ++A+  F ++   G   D  T++S++ ++G       G+ +H
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275

Query: 86  ALIFKIGYDSNVFVQNRLVFMYA---------------------IC----------GAIN 114
             + K G   +  V + ++ MY                      +C          G ++
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335

Query: 115 DANKVFSSMDER----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
            A ++F    E+    ++VSW S++ GCA +G   EA++LF +MQ   +KP+  T   +L
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395

Query: 171 SAC 173
            AC
Sbjct: 396 PAC 398



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 2/135 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      Q V++ + T+N + WN+++ GF   G  ++ +  F  + +  +  D+ + 
Sbjct: 433 YAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISF 492

Query: 66  TSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           TS++ A G +    EG K    +  + G    +   + +V +    G + +A  +   M 
Sbjct: 493 TSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMP 552

Query: 125 -ERDLVSWNSLLLGC 138
            E D   W +LL  C
Sbjct: 553 FEPDSCVWGALLNSC 567



 Score = 37.4 bits (85), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 44/102 (43%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           Q HA I K G  ++ ++  +L+  Y+     NDA+ V  S+ +  + S++SL+       
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
              +++ +F +M    + PD      +   C        G Q
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQ 137


>gi|115446683|ref|NP_001047121.1| Os02g0555100 [Oryza sativa Japonica Group]
 gi|113536652|dbj|BAF09035.1| Os02g0555100 [Oryza sativa Japonica Group]
          Length = 596

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/310 (39%), Positives = 172/310 (55%), Gaps = 8/310 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y R     D   V+  +  ++ I+W A+I+G    G  E AL+ F  M   G+    
Sbjct: 243 IAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTP 302

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFK--IGYDS-NVFVQNRLVFMYAICGAINDANKV 119
           F + S +GA   +     GK++H  I +  IG D  NVF+ N L+ MY+ CG +  A  V
Sbjct: 303 FALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAV 362

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M ERD++SWNS++ G +H+G  ++++ +FE+M K E++P   TFL VL+AC HAG +
Sbjct: 363 FDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLV 422

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV---YK 236
             G +    M+ D  +E PRAEHY A +  LGR   L EA  FI  +S   G      + 
Sbjct: 423 SDGRRILESMQ-DHGVE-PRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWG 480

Query: 237 ALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
           ALL AC VHGN EIA   A+ +  L P +   YV+LSN+  A   WDDA  +R LM  +G
Sbjct: 481 ALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVRALMKGKG 540

Query: 297 IRKKPGYSWV 306
           +RK   YSW+
Sbjct: 541 LRKDQAYSWI 550



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 38/241 (15%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMR------QAGIDIDYFTITSIVGAIGVISG 77
           +RN +S+N +I+     G   +AL+ F+++       Q  + ID FT+ S   A   +  
Sbjct: 126 SRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRD 185

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS---- 133
            +  +++H  +   G +  V + N +V  Y+  G + DA  VF  M  RD VSW S    
Sbjct: 186 ARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAG 245

Query: 134 ---------------------------LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
                                      L+ G   +G    A++LFE+M    + P     
Sbjct: 246 YCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFAL 305

Query: 167 LVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINS 225
           +  L AC   G + +G + + +++R     +P     + A++ +  + G +  A +  + 
Sbjct: 306 VSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDR 365

Query: 226 M 226
           M
Sbjct: 366 M 366



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 70/247 (28%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAIC------------------------------ 110
           G  +HAL+ K     +  + NRLV +YA+                               
Sbjct: 48  GAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALAR 107

Query: 111 --GAINDANKVFSSMD--ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK------TEIK 160
             G + DA ++   M    R++VS+N+++   A HG   EA+++F Q+ +       ++ 
Sbjct: 108 GRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVA 167

Query: 161 PDGTTFLVVLSACC-----------HAGFIDKGLQYFYLMRN---DASLEPPRAE----- 201
            D  T +   SAC            H   +  G++   +M N   DA  +  R E     
Sbjct: 168 IDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGV 227

Query: 202 ----------HYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
                      +T+++    RA  L++A    + M      + + AL+S  + +G  EIA
Sbjct: 228 FDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIA-WTALISGHEQNGEEEIA 286

Query: 252 VRSAKRV 258
           +   +R+
Sbjct: 287 LELFERM 293


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 114/289 (39%), Positives = 169/289 (58%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++ ++ RN +SWN++I G+   G   +AL CF  M+Q G   D  TI   + A   ++ 
Sbjct: 410 MFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAA 469

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G Q+H L  K G+ +++FV+N ++ MYA  G + +A  VF+ +  +D+VSWNSL+ G
Sbjct: 470 LNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAG 529

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G  +EAV+LFE M    I PD  TF  +LSAC H GF+D+GL  F  M    S++ 
Sbjct: 530 YALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIK- 588

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P++EHY  ++ LLGR G L EA   +  M       ++ ALL AC++H N E+A  SA+R
Sbjct: 589 PQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAER 648

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +L L P + + YVLLSN+      WD    +R LM      K+PG SW+
Sbjct: 649 LLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQPGCSWI 697



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +N+++ + T+N +SWNA+I  +      + A K F EM +     D  + T+++     +
Sbjct: 253 RNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEK----DSVSWTAMINGYVRV 308

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               + ++    I  +    N+  Q  ++  Y   G +++AN++FS +  RD V WNS++
Sbjct: 309 GKLLQARE----ILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMI 364

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
            G AH G + EA++LF++M    +  D  ++  +++A   AG +DK L+ F  M+
Sbjct: 365 TGYAHCGRTDEALRLFQEM----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQ 415



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 51/209 (24%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++S +  R+ + WN++I G+ + G  ++AL+ F EM    +  D  +  +++ A      
Sbjct: 348 IFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEM----VCKDMVSWNTMIAA------ 397

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
                                        YA  G ++ A ++F+ M ER++VSWNSL+ G
Sbjct: 398 -----------------------------YAQAGQMDKALEMFNEMQERNVVSWNSLITG 428

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-----MRND 192
              +G   EA+  F  M++   KPD TT +  L A  +   ++ G+Q  +L       ND
Sbjct: 429 YVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGND 488

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAES 221
             ++        AI+ +  ++G + EAE+
Sbjct: 489 LFVK-------NAILTMYAKSGRVPEAEN 510



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 17/224 (7%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++     + + ++  +  RN +SWN++IAG+ +    E A + F  M +     D 
Sbjct: 53  ISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKR----DI 108

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           ++ T ++     I   ++ +++  L+       +   +N L+  YA      +A K+F  
Sbjct: 109 YSWTLMITCYTRIGELEKARELFNLLPD---KQDTVCRNALIAGYAKKRLFREAKKLFDE 165

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  +++VSWNS+L G   +G  +  +Q FE M +  +     ++ +++      G +D  
Sbjct: 166 MLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNV----VSWNLMVDGYVGVGDLDSA 221

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
             +F        +  P    +  ++      G + EA +  N M
Sbjct: 222 WMFF------KKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEM 259



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 4/102 (3%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +F    + N+   N ++  YA  G I +A ++F  M +R+LVSWNS++ G  H+    +A
Sbjct: 37  VFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDA 96

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
            +LF++M K +I     ++ ++++     G ++K  + F L+
Sbjct: 97  ARLFDRMFKRDI----YSWTLMITCYTRIGELEKARELFNLL 134



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 95/214 (44%), Gaps = 22/214 (10%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  +N +SWN+I++G+   G  +  L+ F  M +  +      +   VG   + 
Sbjct: 160 KKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLD 219

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S +        + FK     NV     ++  +A  G + +A  +F+ M  ++LVSWN+++
Sbjct: 220 SAW--------MFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMI 271

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDA 193
                     +A +LF +M     + D  ++  +++     G + +  +   LM  +N A
Sbjct: 272 GAYVRENQIDDAYKLFMEMP----EKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIA 327

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
           +         TA++    ++G ++EA    + +S
Sbjct: 328 A--------QTAMINGYLQSGRMDEANEIFSQIS 353



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 95  SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
           S VF QN  +      G I +A  VF  M ER++V++NS++   A +G    A +LF+ M
Sbjct: 13  SYVFTQNLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLM 72

Query: 155 QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF-YLMRNDASLEPPRAEHYTAIVGLLGRA 213
            +  +     ++  +++   H   ++   + F  + + D          +T ++    R 
Sbjct: 73  PQRNL----VSWNSMIAGYLHNELVEDAARLFDRMFKRDIY-------SWTLMITCYTRI 121

Query: 214 GFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260
           G L +A    N +          AL++       ++   R AK++ D
Sbjct: 122 GELEKARELFNLLPDKQDTVCRNALIAGYA----KKRLFREAKKLFD 164


>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
          Length = 596

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/310 (39%), Positives = 172/310 (55%), Gaps = 8/310 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y R     D   V+  +  ++ I+W A+I+G    G  E AL+ F  M   G+    
Sbjct: 243 IAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTP 302

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFK--IGYDS-NVFVQNRLVFMYAICGAINDANKV 119
           F + S +GA   +     GK++H  I +  IG D  NVF+ N L+ MY+ CG +  A  V
Sbjct: 303 FALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAV 362

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M ERD++SWNS++ G +H+G  ++++ +FE+M K E++P   TFL VL+AC HAG +
Sbjct: 363 FDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLV 422

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV---YK 236
             G +    M+ D  +E PRAEHY A +  LGR   L EA  FI  +S   G      + 
Sbjct: 423 SDGRRILESMQ-DHGVE-PRAEHYAAFIDALGRNHQLEEASEFIKGLSSKIGLGTTGSWG 480

Query: 237 ALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
           ALL AC VHGN EIA   A+ +  L P +   YV+LSN+  A   WDDA  +R LM  +G
Sbjct: 481 ALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVRALMKGKG 540

Query: 297 IRKKPGYSWV 306
           +RK   YSW+
Sbjct: 541 LRKDQAYSWI 550



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 38/241 (15%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMR------QAGIDIDYFTITSIVGAIGVISG 77
           +RN +S+N +I+     G   +AL+ F+++       Q  + ID FT+ S   A   +  
Sbjct: 126 SRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRD 185

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS---- 133
            +  +++H  +   G +  V + N +V  Y+  G + DA  +F  M  RD VSW S    
Sbjct: 186 ARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGLFDQMTIRDSVSWTSMIAG 245

Query: 134 ---------------------------LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
                                      L+ G   +G    A++LFE+M    + P     
Sbjct: 246 YCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFAL 305

Query: 167 LVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINS 225
           +  L AC   G + +G + + +++R     +P     + A++ +  + G +  A +  + 
Sbjct: 306 VSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDR 365

Query: 226 M 226
           M
Sbjct: 366 M 366



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 70/247 (28%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAIC------------------------------ 110
           G  +HAL+ K     +  + NRLV +YA+                               
Sbjct: 48  GAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALAR 107

Query: 111 --GAINDANKVFSSMD--ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK------TEIK 160
             G + DA ++   M    R++VS+N+++   A HG   EA+++F Q+ +       ++ 
Sbjct: 108 GRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVA 167

Query: 161 PDGTTFLVVLSACC-----------HAGFIDKGLQYFYLMRN---DASLEPPRAE----- 201
            D  T +   SAC            H   +  G++   +M N   DA  +  R E     
Sbjct: 168 IDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGL 227

Query: 202 ----------HYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
                      +T+++    RA  L++A    + M      + + AL+S  + +G  EIA
Sbjct: 228 FDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIA-WTALISGHEQNGEEEIA 286

Query: 252 VRSAKRV 258
           +   +R+
Sbjct: 287 LELFERM 293


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 105/279 (37%), Positives = 168/279 (60%), Gaps = 1/279 (0%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           ++WN IIA +   G  ++A+  F +MR      +  T  S++ A   ++ F+EG   HA 
Sbjct: 243 VTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHAC 302

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           I ++G+ SN  V N L+ MYA CG ++ + K+F+ MD +D VSWN++L G A HG+   A
Sbjct: 303 IIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRA 362

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           + LF  MQ+++++ D  +F+ VLSAC HAG +++G + F+ M +   ++P   EHY  +V
Sbjct: 363 IALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPD-LEHYACMV 421

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267
            LLGRAG  +E   FI  M   P   V+ ALL +C++H N ++   +   ++ L P +PA
Sbjct: 422 DLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPA 481

Query: 268 IYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +V+LS++   +  W DAG  R+ M + G++K PG SWV
Sbjct: 482 HFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWV 520



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 17/200 (8%)

Query: 4   LTYSRCDSSLDFQNVYSSVRTRN---QISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           L+ S   + L +  + SS +  N   QI    I++GF +  S    +  +S   +  +  
Sbjct: 44  LSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCDLAR 103

Query: 61  DYFTIT---------SIVGAIGVISGFKEGKQMH-ALIFKIGYDSNVFVQNRLVFMYAIC 110
             F  T         S++ A      + E  +M+  ++ K G + +VF+   LV MY+  
Sbjct: 104 SVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKM 163

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G +  A +VF  M +RD+V+WN+++ G +       A ++F+QM    +  D  ++  ++
Sbjct: 164 GDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQM----VDQDDVSWGTMM 219

Query: 171 SACCHAGFIDKGLQYFYLMR 190
           +   H G   + L+ F  M+
Sbjct: 220 AGYAHNGCFVEVLELFDKMK 239



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 82/170 (48%), Gaps = 6/170 (3%)

Query: 6   YSRCDSSLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C   LD+ + +++ +  ++ +SWNA+++G+   G G++A+  FS M+++ + ID  +
Sbjct: 322 YAKC-GQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVS 380

Query: 65  ITSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
             S++ A       +EG+++ H++  K     ++     +V +    G  ++       M
Sbjct: 381 FVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVM 440

Query: 124 D-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
             E D   W +LL  C  H   +      + + K E  P      VVLS+
Sbjct: 441 PVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLE--PRNPAHFVVLSS 488


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 112/291 (38%), Positives = 170/291 (58%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +  +  +  +N ++WNA+IAG+      E  LK F  M ++G   +  +++S++     +
Sbjct: 181 EKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNL 240

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S  K GKQ+H LI K     N+     L+ MY  CG + DA K+F  M ++D+V+WN+++
Sbjct: 241 SALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMI 300

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG   +A+ LF++M+   +KPD  TF+ VLSAC HAGF+D G++YF  M  D  +
Sbjct: 301 SGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGV 360

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           E  + +HYT +V LLGR G L EA   I  M   P  +++  LL AC++H N E+A  +A
Sbjct: 361 E-AKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAA 419

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           K +L+L P   A YV L+NV  A + WD    +R  M +  + K PGYSW+
Sbjct: 420 KNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWI 470



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 105/239 (43%), Gaps = 21/239 (8%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           +  +  ++  SWN +I+GF   G  +QA + F  M           + + V    +ISG+
Sbjct: 91  FDQMPVKDTASWNTMISGFSQNGMMDQARELFLVM----------PVRNSVSWNAMISGY 140

Query: 79  KEGKQMH--ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            E   +     +F++    +V     ++  +   G I  A K F  M  ++LV+WN+++ 
Sbjct: 141 VESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIA 200

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G   +  +   ++LF++M ++  +P+ ++   VL  C +   +  G Q   L+      +
Sbjct: 201 GYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLI-----CK 255

Query: 197 PPRAEHYTAIVGLLG---RAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            P + + TA   LL    + G L +A      M +      + A++S    HG  E A+
Sbjct: 256 SPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQK-DVVTWNAMISGYAQHGAGEKAL 313



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 39/66 (59%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D   ++  +  ++ ++WNA+I+G+   G+GE+AL  F +MR  G+  D+ T 
Sbjct: 272 YCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITF 331

Query: 66  TSIVGA 71
            +++ A
Sbjct: 332 VAVLSA 337



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 95  SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH-HGYSREAVQLFEQ 153
           SNV   NR++  +   G +N A +VF SM  +  V+WNS+L G ++  G  + A QLF++
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDR 62

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
           +     +PD  ++ ++L+   H   ++    +F
Sbjct: 63  IP----EPDIFSYNIMLACYLHNADVESARLFF 91



 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 25/208 (12%)

Query: 23  RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF--KE 80
           ++ N IS N +I      G    AL+ F  M          T+ + V    +++G+  + 
Sbjct: 1   KSSNVISSNRVITNHIRSGDLNSALRVFESM----------TVKTTVTWNSMLAGYSNRR 50

Query: 81  GK-QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           GK ++   +F    + ++F  N ++  Y     +  A   F  M  +D  SWN+++ G +
Sbjct: 51  GKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFS 110

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR 199
            +G   +A +LF  M       +  ++  ++S    +G +D   Q F        + P R
Sbjct: 111 QNGMMDQARELFLVMPVR----NSVSWNAMISGYVESGDLDLAKQLF-------EVAPVR 159

Query: 200 A-EHYTAIVGLLGRAGFLNEAESFINSM 226
           +   +TA++    + G +  AE +   M
Sbjct: 160 SVVAWTAMITGFMKFGKIELAEKYFEEM 187


>gi|42562381|ref|NP_174190.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806502|sp|Q1PFQ9.2|PPR62_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g28690, mitochondrial; Flags: Precursor
 gi|332192893|gb|AEE31014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 520

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 180/295 (61%), Gaps = 3/295 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLG-SGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           D + ++++ + ++ + +NA++ GF   G + ++++  +  M++AG   +  T  S++GA 
Sbjct: 224 DAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGAC 283

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
            V++  + G+Q+HA I K G  +++ + + L+ MYA CG INDA +VF  M E+++ SW 
Sbjct: 284 SVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWT 343

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           S++ G   +G   EA++LF +M++  I+P+  TFL  LSAC H+G +DKG + F  M+ D
Sbjct: 344 SMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRD 403

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            S++ P+ EHY  IV L+GRAG LN+A  F  +M   P   ++ ALLS+C +HGN E+A 
Sbjct: 404 YSMK-PKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCNLHGNVELAS 462

Query: 253 RSAKRVLDLWPND-PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +A  +  L  +  P  Y+ LSNV  + D WD+   IR +M  R I K  G SW 
Sbjct: 463 IAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKRRRISKTIGRSWT 517



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 55/99 (55%)

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           K GK++HA I K G+  ++ +  +L+ ++  CG ++ A +VF  + +  L ++N ++ G 
Sbjct: 51  KAGKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGY 110

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
             HG  +E + L ++M  +  K DG T  +VL A    G
Sbjct: 111 LKHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRG 149



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 112/278 (40%), Gaps = 42/278 (15%)

Query: 58  IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
           +++D   IT++V    V SG  E  +    +F+   D NV     ++  Y   G + DA 
Sbjct: 171 VELDDVLITALVDTY-VKSGKLESART---VFETMKDENVVCCTSMISGYMNQGFVEDAE 226

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYS-REAVQLFEQMQKTEIKPDGTTFLVVLSAC--- 173
           ++F++   +D+V +N+++ G +  G + + +V ++  MQ+    P+ +TF  V+ AC   
Sbjct: 227 EIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSVL 286

Query: 174 --------CHAGFIDKGLQYFYLMR-------------NDA-----SLEPPRAEHYTAIV 207
                    HA  +  G+     M              NDA      ++      +T+++
Sbjct: 287 TSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMI 346

Query: 208 GLLGRAGFLNEAESFINSMSR---NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
              G+ G   EA      M      P    +   LSAC   G     V     + +    
Sbjct: 347 DGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSG----LVDKGYEIFESMQR 402

Query: 265 DPAIYVLLSNVSKATDCWDDAGDI-RTLMYNRGIRKKP 301
           D ++   + + +   D    AGD+ +   + R + ++P
Sbjct: 403 DYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERP 440



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 24/150 (16%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D + V+  ++ +N  SW ++I G+   G+ E+AL+ F+ M++  I+ +Y T 
Sbjct: 318 YAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVT- 376

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQ---------NRLVFMYAICGAINDA 116
              +GA+   S        H+ +   GY+    +Q              +  + G   D 
Sbjct: 377 --FLGALSACS--------HSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDL 426

Query: 117 NKVFS---SMDER-DLVSWNSLLLGCAHHG 142
           NK F    +M ER D   W +LL  C  HG
Sbjct: 427 NKAFEFARAMPERPDSDIWAALLSSCNLHG 456


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 170/291 (58%), Gaps = 2/291 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +  ++ ++WN++I GF   G   +AL  +  M   G++ D FT+ S++ A   ++
Sbjct: 62  KVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELA 121

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD-ERDLVSWNSLL 135
               G++ H  + K+G + N+   N L+ +YA CG I++A K+F  M  ER++VSW SL+
Sbjct: 122 TLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLI 181

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           +G A +G+ +EA++ F+ M++  + P   TF+ VL AC H G +++G +YF  M+    +
Sbjct: 182 VGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDI 241

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
             PR EHY  +V LLGRAG L EA  +I  M   P   +++ LL AC +HG+  +   + 
Sbjct: 242 -VPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFAR 300

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            R+L L P D   YVLLSN+  +   W D  ++R  M + G+RK PGYS V
Sbjct: 301 ARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLV 351



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 2/138 (1%)

Query: 109 ICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
           I      A KVF  M E+D+V+WNS++ G A +G   EA+ L+++M    ++PDG T + 
Sbjct: 53  ITAYFESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVS 112

Query: 169 VLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
           +LSAC     +  G +    M      +   A    A++ L  + G ++EA    + M  
Sbjct: 113 LLSACAELATLVLGRRAHVYMVKVGLNKNLHAN--NALLDLYAKCGTISEARKIFDEMGI 170

Query: 229 NPGPSVYKALLSACQVHG 246
                 + +L+    V+G
Sbjct: 171 ERNVVSWTSLIVGLAVNG 188


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 175/301 (58%), Gaps = 26/301 (8%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+R  S    + ++S +  RN +SWNA+IAG+   G  E+AL+ F  +++  I   ++T 
Sbjct: 325 YARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTF 384

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++                         S++FV N L+ MY  CG+I D ++VF  M E
Sbjct: 385 GNLL------------------------KSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKE 420

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSWN++++G A +GY  EA+Q+F +M     KPD  T + VL AC HAG +++G  Y
Sbjct: 421 RDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHY 480

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ M     +  P  +HYT +V LLGRAG LNEA++ I +M  NP   V+ +LL+AC+VH
Sbjct: 481 FFSMEEHGLI--PLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVH 538

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+   +A+++L++ P +   YVLLSN+      W D   +R LM  +G+ K+PG SW
Sbjct: 539 GNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSW 598

Query: 306 V 306
           +
Sbjct: 599 I 599



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 117/216 (54%), Gaps = 13/216 (6%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ S+   +Q SWN++++GF      E++L+ F +M +    ++ ++  S + A   +  
Sbjct: 103 LFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMD 162

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G Q+HAL+ K  Y ++V++ + L+ MY+ CG++  A +VFS M ER+LV+WNSL+  
Sbjct: 163 LNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITC 222

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM------RN 191
              +G + EA+++F +M  + ++PD  T   V+SAC     + +GLQ    +      R+
Sbjct: 223 YEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRD 282

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
           D  L         A+V +  +   +NEA    + MS
Sbjct: 283 DLVLG-------NALVDMYAKCSKVNEARRVFDRMS 311



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 32/196 (16%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C S    + V+S +  RN ++WN++I  +   G   +AL+ F  M  +G++ D 
Sbjct: 189 IDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDE 248

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKV-- 119
            T+ S+V A   +   KEG Q+HA + K   +  ++ + N LV MYA C  +N+A +V  
Sbjct: 249 VTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFD 308

Query: 120 -----------------------------FSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
                                        FS M +R++VSWN+L+ G   +G + EA++L
Sbjct: 309 RMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRL 368

Query: 151 FEQMQKTEIKPDGTTF 166
           F  +++  I P   TF
Sbjct: 369 FRLLKRESIWPTHYTF 384



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 4/111 (3%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           + +HA I    +   +F+QNRL+ +Y  C  ++DA K+F  M +R+  +WNSL+      
Sbjct: 35  RLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKS 94

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           G+  EA +LF  M     +PD  ++  ++S        ++ L+YF  M  +
Sbjct: 95  GFLDEAARLFGSMP----EPDQCSWNSMVSGFAQHDRFEESLEYFVKMHRE 141


>gi|116830928|gb|ABK28420.1| unknown [Arabidopsis thaliana]
          Length = 521

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 180/295 (61%), Gaps = 3/295 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLG-SGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           D + ++++ + ++ + +NA++ GF   G + ++++  +  M++AG   +  T  S++GA 
Sbjct: 224 DAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGAC 283

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
            V++  + G+Q+HA I K G  +++ + + L+ MYA CG INDA +VF  M E+++ SW 
Sbjct: 284 SVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWT 343

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           S++ G   +G   EA++LF +M++  I+P+  TFL  LSAC H+G +DKG + F  M+ D
Sbjct: 344 SMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRD 403

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            S++ P+ EHY  IV L+GRAG LN+A  F  +M   P   ++ ALLS+C +HGN E+A 
Sbjct: 404 YSMK-PKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCNLHGNVELAS 462

Query: 253 RSAKRVLDLWPND-PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +A  +  L  +  P  Y+ LSNV  + D WD+   IR +M  R I K  G SW 
Sbjct: 463 IAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKRRRISKTIGRSWT 517



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 55/99 (55%)

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           K GK++HA I K G+  ++ +  +L+ ++  CG ++ A +VF  + +  L ++N ++ G 
Sbjct: 51  KAGKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGY 110

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
             HG  +E + L ++M  +  K DG T  +VL A    G
Sbjct: 111 LKHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRG 149



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 112/278 (40%), Gaps = 42/278 (15%)

Query: 58  IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
           +++D   IT++V    V SG  E  +    +F+   D NV     ++  Y   G + DA 
Sbjct: 171 VELDDVLITALVDTY-VKSGKLESART---VFETMKDENVVCCTSMISGYMNQGFVEDAE 226

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYS-REAVQLFEQMQKTEIKPDGTTFLVVLSAC--- 173
           ++F++   +D+V +N+++ G +  G + + +V ++  MQ+    P+ +TF  V+ AC   
Sbjct: 227 EIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSVL 286

Query: 174 --------CHAGFIDKGLQYFYLMR-------------NDA-----SLEPPRAEHYTAIV 207
                    HA  +  G+     M              NDA      ++      +T+++
Sbjct: 287 TSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMI 346

Query: 208 GLLGRAGFLNEAESFINSMSR---NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
              G+ G   EA      M      P    +   LSAC   G     V     + +    
Sbjct: 347 DGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSG----LVDKGYEIFESMQR 402

Query: 265 DPAIYVLLSNVSKATDCWDDAGDI-RTLMYNRGIRKKP 301
           D ++   + + +   D    AGD+ +   + R + ++P
Sbjct: 403 DYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERP 440



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 24/150 (16%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D + V+  ++ +N  SW ++I G+   G+ E+AL+ F+ M++  I+ +Y T 
Sbjct: 318 YAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVT- 376

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQ---------NRLVFMYAICGAINDA 116
              +GA+   S        H+ +   GY+    +Q              +  + G   D 
Sbjct: 377 --FLGALSACS--------HSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDL 426

Query: 117 NKVFS---SMDER-DLVSWNSLLLGCAHHG 142
           NK F    +M ER D   W +LL  C  HG
Sbjct: 427 NKAFEFARAMPERPDSDIWAALLSSCNLHG 456


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    + + ++  +  +  +SWNAII+GF      E + + FS M + G++ D FT 
Sbjct: 505 YSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTY 564

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++     ++    GKQ+HA + K+   S+V++ + LV MY+ CG ++D+  +F    +
Sbjct: 565 ATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPK 624

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD V+WN+++ G A+HG   EA++LFE M    IKP+  TF+ VL AC H G   KGL Y
Sbjct: 625 RDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFY 684

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M +  +LE P+ EHY+ +V +LGR+G + EA   I  M       +++ LLS C++ 
Sbjct: 685 FQKMASIYALE-PQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQ 743

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+A ++A  +L L P D + Y LLSN+      W     IR  M +  ++K+PG SW
Sbjct: 744 GNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKEPGCSW 803

Query: 306 V 306
           +
Sbjct: 804 I 804



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 129/257 (50%), Gaps = 5/257 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++CD+  D   ++S +   N  S+NA+I G+     G QA K F ++++     D  ++
Sbjct: 303 YAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSL 362

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +  + A  VI G  EG Q+H L  K    SN+ V N ++ MY  CGA+ +A+ +F  M+ 
Sbjct: 363 SGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEI 422

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RD VSWN+++  C  +    + +  F  M +++++PD  T+  VL AC        G++ 
Sbjct: 423 RDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEV 482

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +  ++++   L+       +A+V +  + G + EAE     +      S + A++S   +
Sbjct: 483 HGRIIKSGMGLKMFVG---SALVDMYSKCGMMEEAEKIHYRLEEQTMVS-WNAIISGFSL 538

Query: 245 HGNREIAVRSAKRVLDL 261
               E + R    +L++
Sbjct: 539 QKKSEDSQRFFSHMLEM 555



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 5/239 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+S  D  +V+S +  +N ISW+A IAG        + LK F EM++ GI +   T 
Sbjct: 202 YAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTY 261

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+  +   +S  + G Q+H    K  + S+V V    + MYA C  ++DA K+FS + +
Sbjct: 262 ASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPD 321

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            +L S+N++++G A +    +A +LF Q+QK     D  +    LSA        +GLQ 
Sbjct: 322 HNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQL 381

Query: 186 FYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
             L ++++ S     A    AI+ + G+ G L EA    + M     P  + A+++AC+
Sbjct: 382 HGLAIKSNLSSNICVA---NAILDMYGKCGALVEASGLFDEMEIRD-PVSWNAIITACE 436



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 92/179 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C + ++   ++  +  R+ +SWNAII       S  + L  F  M ++ ++ D FT 
Sbjct: 404 YGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTY 463

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A      F  G ++H  I K G    +FV + LV MY+ CG + +A K+   ++E
Sbjct: 464 GSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEE 523

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           + +VSWN+++ G +    S ++ + F  M +  ++PD  T+  VL  C +   +  G Q
Sbjct: 524 QTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQ 582



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 89/159 (55%), Gaps = 1/159 (0%)

Query: 16  QNVYSSVRTRNQI-SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           Q V++S+     + SWN++I+G+   G  ++++  F +MR  G+  D+ T+   +    +
Sbjct: 110 QAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKICSL 169

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +     G Q+H +  ++G+D +V   + LV MYA C ++ D+  VFS + +++ +SW++ 
Sbjct: 170 LEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAA 229

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           + GC  +      ++LF++MQ+  I    +T+  V  +C
Sbjct: 230 IAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSC 268



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 3/115 (2%)

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             K GK+ HA +   G+   VFV N L+ MY  C A+  A KVF  M +RD+VSWN+++ 
Sbjct: 39  ALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVF 98

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
           GCA  G    A  +F  M       D  ++  ++S     G I K +  F  MR+
Sbjct: 99  GCAGAGRMELAQAVFNSMPH---HGDVVSWNSLISGYLQNGDIQKSIAVFLKMRD 150


>gi|125582503|gb|EAZ23434.1| hypothetical protein OsJ_07125 [Oryza sativa Japonica Group]
          Length = 596

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/310 (39%), Positives = 172/310 (55%), Gaps = 8/310 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y R     D   V+  +  ++ I+W A+I+G    G  E AL+ F  M   G+    
Sbjct: 243 IAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTP 302

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFK--IGYDS-NVFVQNRLVFMYAICGAINDANKV 119
           F + S +GA   +     GK++H  I +  IG D  NVF+ N L+ MY+ CG +  A  V
Sbjct: 303 FALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAV 362

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M ERD++SWNS++ G +H+G  ++++ +FE+M K E++P   TFL VL+AC HAG +
Sbjct: 363 FDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLV 422

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV---YK 236
             G +    M+ D  +E PRAEHY A +  LGR   L EA  FI  +S   G      + 
Sbjct: 423 SDGRRILESMQ-DHGVE-PRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWG 480

Query: 237 ALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
           ALL AC VHGN EIA   A+ +  L P +   YV+LSN+  A   WDDA  +R LM  +G
Sbjct: 481 ALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVRALMKGKG 540

Query: 297 IRKKPGYSWV 306
           +RK   YSW+
Sbjct: 541 LRKDQAYSWI 550



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 38/241 (15%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMR------QAGIDIDYFTITSIVGAIGVISG 77
           +RN +S+N +I+     G   +AL+ F+++       Q  + ID FT+ S   A   +  
Sbjct: 126 SRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRD 185

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS---- 133
            +  +++H  +   G +  V + N +V  Y+  G + DA  VF  M  RD VSW S    
Sbjct: 186 ARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAG 245

Query: 134 ---------------------------LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
                                      L+ G   +G    A++LFE+M    + P     
Sbjct: 246 YCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFAL 305

Query: 167 LVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINS 225
           +  L AC   G + +G + + +++R     +P     + A++ +  + G +  A +  + 
Sbjct: 306 VSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDR 365

Query: 226 M 226
           M
Sbjct: 366 M 366



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 70/247 (28%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAIC------------------------------ 110
           G  +HAL+ K     +  + NRLV +YA+                               
Sbjct: 48  GAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALAR 107

Query: 111 --GAINDANKVFSSMD--ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK------TEIK 160
             G + DA ++   M    R++VS+N+++   A HG   EA+++F Q+ +       ++ 
Sbjct: 108 GRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVA 167

Query: 161 PDGTTFLVVLSACC-----------HAGFIDKGLQYFYLMRN---DASLEPPRAE----- 201
            D  T +   SAC            H   +  G++   +M N   DA  +  R E     
Sbjct: 168 IDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGV 227

Query: 202 ----------HYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
                      +T+++    RA  L++A    + M      + + AL+S  + +G  EIA
Sbjct: 228 FDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIA-WTALISGHEQNGEEEIA 286

Query: 252 VRSAKRV 258
           +   +R+
Sbjct: 287 LELFERM 293


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 173/303 (57%), Gaps = 3/303 (0%)

Query: 6   YSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYF 63
           YS+C    + + V+ S+R   + + WNA+IA +   G G+QAL  +  M     +     
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQG 240

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T  +++     +S  K+G+ +HA +    +D+N+ V N LV MY  CG +++A  VF SM
Sbjct: 241 TFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSM 300

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             +D +SWN+++   A+HG+S +A+ L+++M    +KP   TF+ +LSAC H G +  GL
Sbjct: 301 KLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGL 360

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            YFY M++D  ++P    H+  I+ LLGR G L EAE  + SM        + +LL AC+
Sbjct: 361 DYFYRMQDDHRIKPS-VPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACK 419

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
            HG+ +  VR+A +V+D  P     YVLLSN+  A   W D   IR +M  RG++K PG 
Sbjct: 420 THGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGK 479

Query: 304 SWV 306
           SW+
Sbjct: 480 SWI 482



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 128/259 (49%), Gaps = 15/259 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDI 60
           I  Y +C    D +  +  ++ +N ++WNA++  +   G   +AL+ F EM  R      
Sbjct: 73  ISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSARP 132

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYD--SNVFVQNRLVFMYAICGAINDANK 118
           D F+ +  + A   +   ++G+++H ++ + G +   +V V   L+ MY+ CG + +A K
Sbjct: 133 DKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARK 192

Query: 119 VFSSM-DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSACCHA 176
           VF S+  + D V WN+++   A HG  ++A+ L+  M   T++ P   TF+ V+  C   
Sbjct: 193 VFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAEL 252

Query: 177 GFIDKGLQYFYLMRN---DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS 233
             + +G      +R    DA+L         A+V + G+ G L+EA    +SM      S
Sbjct: 253 SALKQGRAIHARVRATNFDANLLVS-----NALVHMYGKCGCLDEALDVFHSMKLKDEIS 307

Query: 234 VYKALLSACQVHGNREIAV 252
            +  ++S+   HG+ + A+
Sbjct: 308 -WNTIISSYAYHGHSDQAL 325



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 112/238 (47%), Gaps = 7/238 (2%)

Query: 34  IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG--FKEGKQMHALIFKI 91
           +A F + G   +AL  F  M Q+G   D  T + I+ AI  +      +G+++H      
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 92  GYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLF 151
           G   NV V   ++ MY  CG ++DA   F  +  ++ V+WN+++      G  REA++LF
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 152 EQM--QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL 209
            +M  +    +PD  +F + + AC +   +++G +   ++R +           TA++ +
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 210 LGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV---RSAKRVLDLWPN 264
             + G L EA    +S+  +     + A+++A   HG  + A+   RS     DL P 
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPK 238


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 177/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+ ++  D +  +  +  +N +SW  +I G+   G G++A++   EM +     D   +
Sbjct: 324 YSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELAL 383

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ + G +S   E  Q+HA + + G+++ + + N LV  Y+ CG+I  A + FSS+ E
Sbjct: 384 ASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAE 443

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D++SW SL+   A HG S+E V++FE+M  + ++PD   FL VLSAC H GF+ +GL Y
Sbjct: 444 PDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHY 503

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM N   + P  +EHYT I+ LLGRAGFL+EA + + SM   P      A L AC+VH
Sbjct: 504 FNLMINVYQIMPD-SEHYTCIIDLLGRAGFLDEAINLLTSMPVEPRSDTLGAFLGACKVH 562

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +A  +++++  + PN+PA Y L+SN+  +   W D   +R LM  R   K PG SW
Sbjct: 563 RNVGLARWASEKLFVMEPNEPANYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSW 622

Query: 306 V 306
           +
Sbjct: 623 M 623



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 131/271 (48%), Gaps = 27/271 (9%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q+ +  V +R+ + WN +++ +   G   +A   F  MR  G+  D FT TS++ + GV+
Sbjct: 233 QSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVL 292

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                GKQ+H LI ++ +D +V V + LV MY+    I DA K F  M  +++VSW +++
Sbjct: 293 GSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMI 352

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----------CHAGFIDKGLQ 184
           +G   HG  +EA++L ++M +    PD      +LS+C            HA  ++ G +
Sbjct: 353 VGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFE 412

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  + N             A+V    + G +  A    +S++  P    + +L+ A   
Sbjct: 413 AFLSIAN-------------ALVSAYSKCGSIGSAFQSFSSVAE-PDIISWTSLMGAYAF 458

Query: 245 HGNREIAVRSAKRVL--DLWPNDPAIYVLLS 273
           HG  +  V   +++L  ++ P+  A   +LS
Sbjct: 459 HGLSKEGVEVFEKMLFSNVRPDKVAFLGVLS 489



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 5/177 (2%)

Query: 2   QIL-TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGF----CNLGSGEQALKCFSEMRQA 56
           Q+L  Y +C    D   ++  +  +N +SWN +I G     C           F +M   
Sbjct: 113 QVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLE 172

Query: 57  GIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
            +  +  T+  ++ A   ++     +Q+H  I K G+DSN FV + LV  YA  G +++A
Sbjct: 173 MMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEA 232

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
              F  +  RDLV WN ++   A +G   +A  +F+ M+   +K D  TF  ++++C
Sbjct: 233 QSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSC 289



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           I   +G + G   GKQ+HA + K+G  + + +QN+++ +Y  C   ND  K+F  M  ++
Sbjct: 82  ISAKLGFLHG---GKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKN 138

Query: 128 LVSWNSLLLGCAHHGYSREAVQL----FEQMQKTEIKPDGTTFLVVLSA 172
           +VSWN+L+ G          V+L    F QM    + P+  T   +L A
Sbjct: 139 VVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRA 187


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 173/302 (57%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSV-RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C +  D  NV+  V    N +SWNAI++         +  + F  M  +    D  T
Sbjct: 506 YTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNIT 565

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           IT+I+G    ++  + G Q+H    K G   +V V NRL+ MYA CG++  A  VF S  
Sbjct: 566 ITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQ 625

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             D+VSW+SL++G A  G   EA+ LF  M+   ++P+  T+L VLSAC H G +++G  
Sbjct: 626 NPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWH 685

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           ++  M  +  + PP  EH + +V LL RAG L EAE+FI  M  NP  +++K LL++C+ 
Sbjct: 686 FYNTMEIELGI-PPTREHVSCMVDLLARAGCLYEAENFIKKMGFNPDITMWKTLLASCKT 744

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN +IA R+A+ +L L P++ A  VLLSN+  +   W +   +R LM   G++K PG S
Sbjct: 745 HGNVDIAERAAENILKLDPSNSAALVLLSNIHASVGNWKEVARLRNLMKQMGVQKVPGQS 804

Query: 305 WV 306
           W+
Sbjct: 805 WI 806



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 5/259 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           I  Y+R    +   +V++ + T++ ISW ++I GF  LG   +AL  F +M RQ     +
Sbjct: 300 ISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPN 359

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            F   S+  A   +   + G+Q+H +  K G   NVF    L  MYA  G +  A + F 
Sbjct: 360 EFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFY 419

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            ++  DLVSWN+++   +  G   EA+  F QM  T + PDG TFL +L AC     I++
Sbjct: 420 QIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQ 479

Query: 182 GLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           G Q + Y+++     E   A    +++ +  +   L++A +    +S N     + A+LS
Sbjct: 480 GTQIHSYIIKIGLDKE---AAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILS 536

Query: 241 ACQVHGNREIAVRSAKRVL 259
           AC  H       R  K +L
Sbjct: 537 ACLQHKQAGEVFRLFKLML 555



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 119/276 (43%), Gaps = 45/276 (16%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D +  + +++ RN +SW  +I+G+   G    A+  + +M Q+G   D  T 
Sbjct: 202 YGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTF 261

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A  +      G+Q+H  + K GYD ++  QN L+ MY   G I  A+ VF+ +  
Sbjct: 262 GSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMIST 321

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSAC----------- 173
           +DL+SW S++ G    GY  EA+ LF  M ++   +P+   F  V SAC           
Sbjct: 322 KDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQ 381

Query: 174 ------------------------CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL 209
                                      GF+   ++ FY       +E P    + AI+  
Sbjct: 382 IHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFY------QIESPDLVSWNAIIAA 435

Query: 210 LGRAGFLNEAESFINSMSRN---PGPSVYKALLSAC 242
              +G +NEA  F   M      P    + +LL AC
Sbjct: 436 FSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCAC 471



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 1/159 (0%)

Query: 27  QISWNAIIAGFCNLGSGEQALKCFS-EMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           ++S N+ I   C      +AL  F+   + + I ++  T  +++ A   I   K GK++H
Sbjct: 121 ELSTNSYINLMCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIH 180

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
             I K     ++ +QN ++ MY  CG++ DA K F +M  R++VSW  ++ G + +G   
Sbjct: 181 DHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQEN 240

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +A+ ++ QM ++   PD  TF  ++ ACC AG ID G Q
Sbjct: 241 DAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQ 279


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 107/293 (36%), Positives = 169/293 (57%), Gaps = 1/293 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   ++S +  R+ +SWN+++A +   G   +AL  F +MR  G+     T+ S++ A  
Sbjct: 166 DAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACA 225

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +    +G  +H  I     + N  V   LV MYA CG I+ A +VF++M+ +D+++WN+
Sbjct: 226 HLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNT 285

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G A HG+ +EA +LF++M++  ++P+  TF+ +LSAC HAG +D+G +    M +  
Sbjct: 286 IIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSY 345

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            +E P+ EHY  ++ LL RAG L EA   I +M   P P    ALL  C++HGN E+   
Sbjct: 346 GIE-PKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEM 404

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             KR+++L P     Y+LLSN+  A   WDDA  +R LM   GI K PG S +
Sbjct: 405 VGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVI 457



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 5/170 (2%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G  +DA  +FS M  RD+VSWNS+L   A  G   EA+ LF+QM+   +KP   T + +L
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 171 SACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNP 230
           SAC H G +DKGL + +   ND  +E   +   TA+V +  + G ++ A    N+M  + 
Sbjct: 222 SACAHLGALDKGL-HLHTYINDNRIE-VNSIVGTALVDMYAKCGKISLATQVFNAM-ESK 278

Query: 231 GPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
               +  +++   +HG+ + A R  K + +  + PND     +LS  S A
Sbjct: 279 DVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHA 328



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 71/139 (51%), Gaps = 2/139 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        V++++ +++ ++WN IIAG    G  ++A + F EM++AG++ +  T 
Sbjct: 259 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITF 318

Query: 66  TSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +++ A        EG++ +  +    G +  V     ++ + A  G + +A ++  +M 
Sbjct: 319 VAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMP 378

Query: 125 -ERDLVSWNSLLLGCAHHG 142
            E +  +  +LL GC  HG
Sbjct: 379 MEPNPCALGALLGGCRIHG 397


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 173/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C      Q ++  +  R+ +SWN +IAG+   G  ++A+  F +M   GI      I
Sbjct: 355 YICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAI 414

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             + GA   +S  + GK++H    K     ++FV + ++ MYA  G I  + ++F  + E
Sbjct: 415 MCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLRE 474

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+ SWN ++ G   HG  +EA++LFE+M +  +KPD  TF  +L AC HAG ++ GL+Y
Sbjct: 475 KDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEY 534

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M N  ++E P+ EHYT +V +LGRAG +++A   I  M  +P   ++ +LLS+C++H
Sbjct: 535 FNQMLNLHNIE-PKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIH 593

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN  +  + A ++L+L P  P  YVL+SN+   +  WDD   +R  M + G++K  G SW
Sbjct: 594 GNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSW 653

Query: 306 V 306
           +
Sbjct: 654 I 654



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 126/270 (46%), Gaps = 15/270 (5%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  + T+   SWNA++ G+       +AL  + +M  +G+D D+FTI S++ A   +
Sbjct: 264 KRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM 323

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+++H    + G   + F+   L+ +Y  CG    A  +F  M+ R LVSWN ++
Sbjct: 324 KSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMI 383

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH--AGFIDKGLQYFYL---MR 190
            G + +G   EA+ LF QM    I+P     + V  AC    A  + K L  F L   + 
Sbjct: 384 AGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLT 443

Query: 191 NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREI 250
            D  +        ++I+ +  + G +  ++   + + R    + +  +++   +HG  + 
Sbjct: 444 EDIFVS-------SSIIDMYAKGGCIGLSQRIFDRL-REKDVASWNVIIAGYGIHGRGKE 495

Query: 251 AVRSAKRVLDLW--PNDPAIYVLLSNVSKA 278
           A+   +++L L   P+D     +L   S A
Sbjct: 496 ALELFEKMLRLGLKPDDFTFTGILMACSHA 525



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 110/246 (44%), Gaps = 15/246 (6%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           L +   +R   SL F N      T  Q S    I   C  G+ ++AL  F +     + +
Sbjct: 45  LSLSAQTRQTKSLSFANS----STNRQFSSLHEIKKLCESGNLKEALD-FLQRESDDVVL 99

Query: 61  DYFTITSIVG----AIGVISGFKEGKQMHALIFKIGYDSNVFVQN-RLVFMYAICGAIND 115
           D    +  +G    A G     + G+++H ++       N FV N R++ MY++CG+ +D
Sbjct: 100 DSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSD 159

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLF-EQMQKTEIKPDGTTFLVVLSACC 174
           +  VF  +  ++L  WN+++     +    +A+ +F E +  TE KPD  T   V+ AC 
Sbjct: 160 SRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC- 218

Query: 175 HAGFIDKGL-QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS 233
            AG +D GL Q  + M     L         A++ + G+ G + EA   +  +      S
Sbjct: 219 -AGLLDLGLGQIIHGMATKMDLVSD-VFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVS 276

Query: 234 VYKALL 239
            + ALL
Sbjct: 277 SWNALL 282


>gi|6691205|gb|AAF24543.1|AC007508_6 F1K23.11 [Arabidopsis thaliana]
          Length = 841

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 180/295 (61%), Gaps = 3/295 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLG-SGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           D + ++++ + ++ + +NA++ GF   G + ++++  +  M++AG   +  T  S++GA 
Sbjct: 545 DAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGAC 604

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
            V++  + G+Q+HA I K G  +++ + + L+ MYA CG INDA +VF  M E+++ SW 
Sbjct: 605 SVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWT 664

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           S++ G   +G   EA++LF +M++  I+P+  TFL  LSAC H+G +DKG + F  M+ D
Sbjct: 665 SMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRD 724

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            S++ P+ EHY  IV L+GRAG LN+A  F  +M   P   ++ ALLS+C +HGN E+A 
Sbjct: 725 YSMK-PKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCNLHGNVELAS 783

Query: 253 RSAKRVLDLWPND-PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +A  +  L  +  P  Y+ LSNV  + D WD+   IR +M  R I K  G SW 
Sbjct: 784 IAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKRRRISKTIGRSWT 838



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 55/99 (55%)

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           K GK++HA I K G+  ++ +  +L+ ++  CG ++ A +VF  + +  L ++N ++ G 
Sbjct: 372 KAGKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGY 431

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
             HG  +E + L ++M  +  K DG T  +VL A    G
Sbjct: 432 LKHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRG 470



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 111/279 (39%), Gaps = 44/279 (15%)

Query: 58  IDIDYFTITSIVGAIGVISGFKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
           +++D   IT++V         K GK   A  +F+   D NV     ++  Y   G + DA
Sbjct: 492 VELDDVLITALVDTY-----VKSGKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDA 546

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYS-REAVQLFEQMQKTEIKPDGTTFLVVLSAC-- 173
            ++F++   +D+V +N+++ G +  G + + +V ++  MQ+    P+ +TF  V+ AC  
Sbjct: 547 EEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSV 606

Query: 174 ---------CHAGFIDKGLQYFYLMR-------------NDA-----SLEPPRAEHYTAI 206
                     HA  +  G+     M              NDA      ++      +T++
Sbjct: 607 LTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSM 666

Query: 207 VGLLGRAGFLNEAESFINSMSR---NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263
           +   G+ G   EA      M      P    +   LSAC   G     V     + +   
Sbjct: 667 IDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSG----LVDKGYEIFESMQ 722

Query: 264 NDPAIYVLLSNVSKATDCWDDAGDI-RTLMYNRGIRKKP 301
            D ++   + + +   D    AGD+ +   + R + ++P
Sbjct: 723 RDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERP 761



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 24/150 (16%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D + V+  ++ +N  SW ++I G+   G+ E+AL+ F+ M++  I+ +Y T 
Sbjct: 639 YAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVT- 697

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQ---------NRLVFMYAICGAINDA 116
              +GA+   S        H+ +   GY+    +Q              +  + G   D 
Sbjct: 698 --FLGALSACS--------HSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDL 747

Query: 117 NKVFS---SMDER-DLVSWNSLLLGCAHHG 142
           NK F    +M ER D   W +LL  C  HG
Sbjct: 748 NKAFEFARAMPERPDSDIWAALLSSCNLHG 777


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 117/299 (39%), Positives = 165/299 (55%), Gaps = 1/299 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C S  D   ++  +  RN ++WNA+I G+ +     +A+  F  M   G      T+
Sbjct: 134 YCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTV 193

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   +  F +GK +H  I+      NVFV   L+ MYA CGA+ +  KVF  + E
Sbjct: 194 VVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIRE 253

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++ +WN L+ G A +G    A+Q F +M     KPD  TFL VL ACCH G + +G   
Sbjct: 254 KNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQ 313

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+    L+ PR EHY  +V LLGRAG L EA   I SMS  P P +++ALL AC+VH
Sbjct: 314 FMSMKQQFGLQ-PRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVH 372

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           GN ++     KR+++L PN+   YVLLSN+      W + G +R +M  RGIRK PG S
Sbjct: 373 GNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCS 431



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 120/244 (49%), Gaps = 6/244 (2%)

Query: 18  VYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           ++S  R + N    N++I  + +L     +L  F+ M +  I  D  T  +++ A   + 
Sbjct: 44  IFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLC 103

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               GK +H ++ ++G+  +V+    LV +Y  C +I+DA+++F  M ER+ V+WN+L+ 
Sbjct: 104 DTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALIT 163

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASL 195
           G  H+    +A+  F  M     +P   T +VVLSAC H G  ++G   + ++  N   L
Sbjct: 164 GYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRL 223

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
                   TA++ +  + G + E E     + R      +  L+S   ++G  + A+++ 
Sbjct: 224 NVFVG---TALIDMYAKCGAVYEVEKVFEEI-REKNVYTWNVLISGYAMNGQGDAALQAF 279

Query: 256 KRVL 259
            R+L
Sbjct: 280 SRML 283


>gi|224140139|ref|XP_002323442.1| predicted protein [Populus trichocarpa]
 gi|222868072|gb|EEF05203.1| predicted protein [Populus trichocarpa]
          Length = 526

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 173/301 (57%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    +   V+  +  RN +SW AII+GF      +  L+ +  MR + +  + FT 
Sbjct: 173 YGKCGELDNAYKVFKEMPVRNVVSWTAIISGFAQDWQVDMCLQLYCLMRNSTLKPNDFTF 232

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A        +G+  H  I ++G+ S + + N LV MY  CG + DA  +F +M  
Sbjct: 233 TSLLSACTGSGALGQGRSAHCQIIEMGFVSYLHIANALVSMYCKCGNVEDAFHIFENMVG 292

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+VSWNS++ G A HG + + + LFE+M+   +KPD  TFL VLS+C HAGF++ G  Y
Sbjct: 293 KDIVSWNSMIAGYAQHGLAVQGIGLFERMKSQGVKPDAITFLGVLSSCRHAGFVEGGRNY 352

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M        P  +HY+ IV LLGRAG L EA+ FI  M  +P   ++ +L+S+C++H
Sbjct: 353 FNSMVEYGV--KPELDHYSCIVDLLGRAGLLEEAQYFIERMPVSPNAVIWGSLVSSCRLH 410

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+  I +++A+  L L P   A +V L+N+  +   WD A  +R LM +R ++  PG SW
Sbjct: 411 GSVWIGIQAAENTLLLEPECAATHVQLANLYASVGFWDQAARVRKLMKDRRLKTNPGCSW 470

Query: 306 V 306
           +
Sbjct: 471 I 471



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 66/125 (52%)

Query: 58  IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
           +  D   +++ V +       + G Q H L    G+ +N ++ + LV  Y  CG +++A 
Sbjct: 124 LSFDASVLSNAVSSCASTRDLRGGIQYHCLAISAGFIANAYIGSSLVTFYGKCGELDNAY 183

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           KVF  M  R++VSW +++ G A        +QL+  M+ + +KP+  TF  +LSAC  +G
Sbjct: 184 KVFKEMPVRNVVSWTAIISGFAQDWQVDMCLQLYCLMRNSTLKPNDFTFTSLLSACTGSG 243

Query: 178 FIDKG 182
            + +G
Sbjct: 244 ALGQG 248


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 117/299 (39%), Positives = 165/299 (55%), Gaps = 1/299 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C S  D   ++  +  RN ++WNA+I G+ +     +A+  F  M   G      T+
Sbjct: 134 YCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTV 193

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   +  F +GK +H  I+      NVFV   L+ MYA CGA+ +  KVF  + E
Sbjct: 194 VVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIRE 253

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++ +WN L+ G A +G    A+Q F +M     KPD  TFL VL ACCH G + +G   
Sbjct: 254 KNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQ 313

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+    L+ PR EHY  +V LLGRAG L EA   I SMS  P P +++ALL AC+VH
Sbjct: 314 FMSMKQQFGLQ-PRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVH 372

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           GN ++     KR+++L PN+   YVLLSN+      W + G +R +M  RGIRK PG S
Sbjct: 373 GNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCS 431



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 120/244 (49%), Gaps = 6/244 (2%)

Query: 18  VYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           ++S  R + N    N++I  + +L     +L  F+ M +  I  D  T  +++ A   + 
Sbjct: 44  IFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLC 103

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               GK +H ++ ++G+  +V+    LV +Y  C +I+DA+++F  M ER+ V+WN+L+ 
Sbjct: 104 DTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALIT 163

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASL 195
           G  H+    +A+  F  M     +P   T +VVLSAC H G  ++G   + ++  N   L
Sbjct: 164 GYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRL 223

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
                   TA++ +  + G + E E     + R      +  L+S   ++G  + A+++ 
Sbjct: 224 NVFVG---TALIDMYAKCGAVYEVEKVFEEI-REKNVYTWNVLISGYAMNGQGDAALQAF 279

Query: 256 KRVL 259
            R+L
Sbjct: 280 SRML 283


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1038

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 177/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C      Q++++ +  R+ I+WNAI+A   + G GE+ LK  S+MR  G+ +D 
Sbjct: 607 ITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQ 666

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F+ +  + A   ++  +EG+Q+H L  K+G++ + F+ N    MY+ CG I +  K+   
Sbjct: 667 FSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPP 726

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              R L SWN L+     HGY  E  + F +M +  IKP   TF+ +L+AC H G +D+G
Sbjct: 727 SVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQG 786

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L Y+ ++  D  LEP   EH   ++ LLGR+G L EAE+FI+ M   P   V+++LL++C
Sbjct: 787 LAYYDMIAKDFGLEPA-IEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASC 845

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H + +   ++A+ +  L P D +++VL SN+   T  W+D  ++R  M  + I+KK  
Sbjct: 846 KIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQA 905

Query: 303 YSWV 306
            SWV
Sbjct: 906 CSWV 909



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 125/255 (49%), Gaps = 34/255 (13%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE-GKQ 83
           R+ ++WNA+I G+      ++AL  F  +R  G+  +Y T+ S++ A  V     E GK 
Sbjct: 527 RDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKP 586

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +HA I   G++S+  V+N L+ MYA CG ++ +  +F+ +D R +++WN++L   AHHG+
Sbjct: 587 LHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGH 646

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-----------MRND 192
             E ++L  +M+   +  D  +F   LSA      +++G Q   L           + N 
Sbjct: 647 GEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNA 706

Query: 193 AS--------------LEPPRAEH----YTAIVGLLGRAGFLNEA-ESF--INSMSRNPG 231
           A+              + PP        +  ++  LGR G+  E  E+F  +  M   PG
Sbjct: 707 AADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPG 766

Query: 232 PSVYKALLSACQVHG 246
              + +LL+AC  HG
Sbjct: 767 HVTFVSLLTACS-HG 780



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 101/172 (58%), Gaps = 1/172 (0%)

Query: 12  SLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVG 70
           ++D+ N +++ +  R+ ISWN+I+A +   G  E++ + F+ MR+   +++  T+++++ 
Sbjct: 311 NVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLS 370

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
            +G +   K G+ +H L+ K+G+DS V V N L+ MYA  G   +A+ VF  M  +DL+S
Sbjct: 371 VLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLIS 430

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           WNSL+    + G S +A+ +   M +T    +  TF   L+AC    F DKG
Sbjct: 431 WNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKG 482



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI-S 76
           ++  +  RN++SWN +++G   +G   + ++ F +M   GI    F I S+V A G   S
Sbjct: 115 LFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGS 174

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            F+EG Q+H  + K G  S+V+V   ++ +Y + G ++ + KVF  M +R++VSW SL++
Sbjct: 175 MFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMV 234

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           G +  G   E + +++ M+   ++ +  +  +V+S+C
Sbjct: 235 GYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSC 271



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 4/242 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  + T++ ISWN+++A F N G    AL     M + G  ++Y T TS + A      
Sbjct: 419 VFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEF 478

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F +G+ +H L+   G   N  + N LV MY   G ++ + +V   M  RD+V+WN+L+ G
Sbjct: 479 FDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGG 538

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +    +A+  F+ ++   +  +  T + VLSAC   G + +  +  +     A  E 
Sbjct: 539 YAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFES 598

Query: 198 PRAEHY-TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
              EH   +++ +  + G L+ ++   N +  N     + A+L+A   HG+ E  ++   
Sbjct: 599 D--EHVKNSLITMYAKCGDLSSSQDLFNGLD-NRSIITWNAILAANAHHGHGEEVLKLVS 655

Query: 257 RV 258
           ++
Sbjct: 656 KM 657



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 90/156 (57%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  RN +SW +++ G+ + G  E+ +  +  MR  G++ +  +++ ++ + G++
Sbjct: 215 RKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLL 274

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+   + K G +S + V+N L+ M+   G ++ AN +F+ + ERD +SWNS++
Sbjct: 275 KDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIV 334

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
              A +G+  E+ ++F  M++   + + TT   +LS
Sbjct: 335 AAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLS 370



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G+ +HAL  K     +V   N L+ MY   G +  A  +F  M  R+ VSWN+++ G   
Sbjct: 77  GRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVR 136

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG-FIDKGLQYFYLMRNDASLEPPR 199
            G   E ++ F++M    IKP       +++AC  +G    +G+Q    +     L    
Sbjct: 137 VGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 196

Query: 200 AEHYTAIVGLLGRAGFLNEAESFINSM 226
               TAI+ L G  G ++ +      M
Sbjct: 197 VS--TAILHLYGVYGLVSCSRKVFEEM 221


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 179/304 (58%), Gaps = 3/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +++     D  +V+  + T + I WN+II GF      + AL+ F  M++AG   + 
Sbjct: 153 IDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQ 212

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+TS++ A   ++  + G Q H  I K  YD ++ + N LV MY  CG++ DA +VF+ 
Sbjct: 213 ATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDARRVFNQ 270

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ERD+++W++++ G A +GYS+EA++LFE M+ +  KP+  T + VL AC HAG ++ G
Sbjct: 271 MKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDG 330

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF  M+    + P R EHY  ++ LLG+AG L++A   +N M   P    ++ LL AC
Sbjct: 331 WYYFRSMKKLYGINPGR-EHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGAC 389

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +V  N  +A  +AK+V+ L P D   Y +LSN+   +  WD   +IR  M + GI+K+PG
Sbjct: 390 RVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPG 449

Query: 303 YSWV 306
            SW+
Sbjct: 450 CSWI 453



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 108/216 (50%), Gaps = 9/216 (4%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   ++  +  RN ISW  +I+ +      ++AL+    M + G+  + +T +S++ A  
Sbjct: 66  DAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRAC- 124

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
             +G  + + +H  I K G +S+V+V++ L+ ++A  G   DA  VF  M   D + WNS
Sbjct: 125 --NGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNS 182

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
           ++ G A +  S  A++LF++M++     +  T   VL AC     ++ G+Q + ++++ D
Sbjct: 183 IIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD 242

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
             L         A+V +  + G L +A    N M  
Sbjct: 243 QDLILN-----NALVDMYCKCGSLEDARRVFNQMKE 273



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 69/140 (49%), Gaps = 8/140 (5%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           ++  G+  D  T + ++          EG  +   ++  G+   +F+ N L+ MY     
Sbjct: 4   LQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNL 63

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           +NDA+++F  M +R+++SW +++   +     ++A++L   M +  ++P+  T+  VL A
Sbjct: 64  LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRA 123

Query: 173 C--------CHAGFIDKGLQ 184
           C         H G I +GL+
Sbjct: 124 CNGMSDVRMLHCGIIKEGLE 143


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 179/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C        ++ +V  ++ ++W ++I  + N G   +AL  F+EM+   +  D   +
Sbjct: 511 YGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVAL 570

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+GAIG +S   +GK++H  + +  +     + + LV MY+ CG+++ A KVF+++  
Sbjct: 571 VSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKC 630

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+V W +++     HG+ ++A+ LF++M +T + PD  +FL +L AC H+  +++G  Y
Sbjct: 631 KDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCY 690

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             +M +   LEP + EHY  +V LLGR+G   EA  FI SM   P   V+ +LL AC+VH
Sbjct: 691 LDMMMSTYRLEPWQ-EHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVH 749

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+AV +A R+L+L P++P  YVL+SNV      W++A ++R  +  RG+RK P  SW
Sbjct: 750 KNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSW 809

Query: 306 V 306
           +
Sbjct: 810 I 810



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 4/184 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR---QAGID 59
           +  Y +C    D + ++  + +R   SWNA+I  + + GS  +AL  +  MR    +G+ 
Sbjct: 102 LFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVA 161

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            D  T+ S++ A GV    + G ++H L  K G D + FV N L+ MYA CG ++ A +V
Sbjct: 162 PDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRV 221

Query: 120 FSSM-DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           F  M D RD+ SWNS++ GC  +G   +A+ LF  MQ+  +  +  T + VL  C     
Sbjct: 222 FELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQ 281

Query: 179 IDKG 182
           ++ G
Sbjct: 282 LNLG 285



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 140/270 (51%), Gaps = 8/270 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C       +V+  +R ++ ISW  II  +       +AL+ F E ++ GI +D   I
Sbjct: 411 YMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMI 470

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A   +      KQ+H    + G   ++ V+NR++ +Y  CG +  + K+F ++++
Sbjct: 471 GSILEACSGLETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQ 529

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D+V+W S++   A+ G   EA+ LF +MQ T+++PD    + +L A      + KG + 
Sbjct: 530 KDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEV 589

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + +L+R +  +E       +++V +    G L+ A    N++ +     ++ A+++A  +
Sbjct: 590 HGFLIRRNFHMEEAIV---SSLVDMYSGCGSLSGALKVFNAV-KCKDMVLWTAMINATGM 645

Query: 245 HGNREIAVRSAKRVLD--LWPNDPAIYVLL 272
           HG+ + A+   KR+L   + P+  +   LL
Sbjct: 646 HGHGKQAIDLFKRMLQTGVTPDHVSFLALL 675



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 99/184 (53%), Gaps = 8/184 (4%)

Query: 3   ILTYSRC---DSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI 58
           I  Y++C   DS++  F+ ++     R+  SWN++I+G    G   QAL  F  M++A +
Sbjct: 206 IAMYAKCGILDSAMRVFELMHDG---RDVASWNSMISGCLQNGMFLQALDLFRGMQRAVL 262

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
            ++ +T   ++     ++    G+++HA + K G + N+   N L+ MY  CG ++ A +
Sbjct: 263 SMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQC-NALLVMYTKCGRVDSALR 321

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           VF  +DE+D +SWNS+L     +G   EA++   +M +   +PD    + + SA  H G+
Sbjct: 322 VFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGW 381

Query: 179 IDKG 182
           +  G
Sbjct: 382 LLNG 385



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 86/171 (50%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ Y++C        V+  +  ++ ISWN++++ +   G   +A++  SEM + G   D+
Sbjct: 307 LVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDH 366

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             I S+  A+G +     GK++HA   K   DS+  V N L+ MY  C  I  +  VF  
Sbjct: 367 ACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDR 426

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           M  +D +SW +++   A      EA+++F + QK  IK D      +L AC
Sbjct: 427 MRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEAC 477



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 34/228 (14%)

Query: 37  FCNLGSGEQALKCFSEMR--QAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIG-- 92
            C  G+  QAL+  +     ++     Y  +  +V A   ++   +G Q+HA     G  
Sbjct: 34  LCKEGNLRQALRLLTSQTPGRSPPQEHYGWVLDLVAAKKAVA---QGVQVHAHAVATGSL 90

Query: 93  YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
              + F+  +L+FMY  CG + DA  +F  M  R + SWN+L+      G + EA+ ++ 
Sbjct: 91  EGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYR 150

Query: 153 QMQ---KTEIKPDGTTFLVVLSAC-----------CHAGFIDKGLQYFYLMRNDASLEPP 198
            M+    + + PDG T   VL A             H   +  GL     + N       
Sbjct: 151 AMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVAN------- 203

Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
                 A++ +  + G L+ A      M      + + +++S C  +G
Sbjct: 204 ------ALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNG 245


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 180/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +S+       +  +  +  RN ISWN+++A +   G  E+ LK + +M + G+  D+
Sbjct: 420 ITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDW 479

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T ++ + A   ++    G Q+ A   K+G+ SNV V N +V MY+ CG I +A K+FSS
Sbjct: 480 ITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSS 539

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  ++LVSWN+++ G A +G  R+ +++FE+M      PD  +++ VLS C H+GF+ +G
Sbjct: 540 IVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEG 599

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF  M  D  +  P +EH+  +V LLGRAG L +A++ IN M   P  +++ ALL+AC
Sbjct: 600 QYYFLSMTKDHGIS-PMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAAC 658

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN ++A  + K +L+L    P  Y LL+N+   +       ++R LM ++G+RK PG
Sbjct: 659 RIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPG 718

Query: 303 YSWV 306
            SW+
Sbjct: 719 CSWI 722



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 110/252 (43%), Gaps = 33/252 (13%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + V+  +   N +SW ++I G    G  E+AL  F++MR+  +  D FT+
Sbjct: 291 YAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTL 350

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS---- 121
            +++G          G+Q+HA     G DS+V V N LV MYA CG +  AN  F     
Sbjct: 351 ATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPI 410

Query: 122 ---------------------------SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
                                       M ER+++SWNS+L      GY  E ++++ QM
Sbjct: 411 RDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQM 470

Query: 155 QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214
            +  +K D  TF   +SAC     +  G Q   L + +            ++V +  R G
Sbjct: 471 LREGVKTDWITFSTSISACADLAVLILGNQ--ILAQAEKLGFSSNVSVANSVVTMYSRCG 528

Query: 215 FLNEAESFINSM 226
            + EA+   +S+
Sbjct: 529 QIEEAQKMFSSI 540



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 87/182 (47%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+  S      +++ +  R+ +SWN +I+     G G + L  F EM   G   + 
Sbjct: 187 IYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNS 246

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S++ A   I   + G  +HA I ++    +V+    L+ MYA CG +  A +VF  
Sbjct: 247 MTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDG 306

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + E + VSW SL+ G A  G+  EA+ LF QM++  +  D  T   VL  C     I  G
Sbjct: 307 LTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIG 366

Query: 183 LQ 184
            Q
Sbjct: 367 EQ 368



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 133/353 (37%), Gaps = 78/353 (22%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA------GID 59
           YS C    D   V+  +   N  SWN +I+GF + G   +A K F +M +        + 
Sbjct: 49  YSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMM 108

Query: 60  IDYF---TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
             YF    + + + A G +   K   Q+H    K  +  +  V+  ++ MY  CGA++ A
Sbjct: 109 SGYFHNGELEATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFA 168

Query: 117 NKV-------------------------------FSSMDERDLVSWNSLLLGCAHHGYSR 145
            KV                               F+ M ERD VSWN+++   + HG+  
Sbjct: 169 QKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGA 228

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACC-----------HAGFID--------KGLQYF 186
           E +  F +M     +P+  T+  VLSAC            HA  +          G    
Sbjct: 229 ETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLI 288

Query: 187 YLMRNDASLEPPR------AEH----YTAIVGLLGRAGFLNEAESFINSMSRNPGPS--- 233
            +      LE  R       EH    +T+++G + +AGF  EA    N M   P  S   
Sbjct: 289 DMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQF 348

Query: 234 ----VYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCW 282
               V    LS   +    ++   +  R LD   + P    L++  +K  D W
Sbjct: 349 TLATVLGVCLSQKDISIGEQLHAHTITRGLD--SSVPVANALVTMYAKCGDVW 399



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 4/104 (3%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
            +++HA +  +G  S++F+QN L+ MY+ CG I+DA +VF  +   ++ SWN+++ G A 
Sbjct: 23  ARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFAD 82

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G  REA +LFE+M +     D  ++  ++S   H G ++  ++
Sbjct: 83  SGQMREAEKLFEKMPER----DSVSWNSMMSGYFHNGELEATIK 122


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 173/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C      Q ++  +  R+ +SWN +IAG+   G  ++A+  F +M   GI      I
Sbjct: 453 YICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAI 512

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             + GA   +S  + GK++H    K     ++FV + ++ MYA  G I  + ++F  + E
Sbjct: 513 MCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLRE 572

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+ SWN ++ G   HG  +EA++LFE+M +  +KPD  TF  +L AC HAG ++ GL+Y
Sbjct: 573 KDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEY 632

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M N  ++E P+ EHYT +V +LGRAG +++A   I  M  +P   ++ +LLS+C++H
Sbjct: 633 FNQMLNLHNIE-PKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIH 691

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN  +  + A ++L+L P  P  YVL+SN+   +  WDD   +R  M + G++K  G SW
Sbjct: 692 GNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSW 751

Query: 306 V 306
           +
Sbjct: 752 I 752



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 96/184 (52%), Gaps = 3/184 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-DID 61
           I  YS C S  D + V+  +R +N   WNAI++ +      E A+  FSE+        D
Sbjct: 41  ITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPD 100

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            FT+  ++ A   +     G+ +H +  K+   S+VFV N L+ MY  CG + +A KVF 
Sbjct: 101 NFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFE 160

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE--IKPDGTTFLVVLSACCHAGFI 179
            M ER+LVSWNS++ G + +G+ +E+   F +M   E    PD  T + VL  C     I
Sbjct: 161 HMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDI 220

Query: 180 DKGL 183
           +KG+
Sbjct: 221 EKGM 224



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 132/283 (46%), Gaps = 15/283 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+RC +    + V+  + T+   SWNA++ G+       +AL  + +M  +G+D D+
Sbjct: 349 IAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDW 408

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FTI S++ A   +     G+++H    + G   + F+   L+ +Y  CG    A  +F  
Sbjct: 409 FTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDG 468

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH--AGFID 180
           M+ R LVSWN ++ G + +G   EA+ LF QM    I+P     + V  AC    A  + 
Sbjct: 469 MEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLG 528

Query: 181 KGLQYFYL---MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
           K L  F L   +  D  +        ++I+ +  + G +  ++   + + R    + +  
Sbjct: 529 KELHCFALKAHLTEDIFVS-------SSIIDMYAKGGCIGLSQRIFDRL-REKDVASWNV 580

Query: 238 LLSACQVHGNREIAVRSAKRVLDLW--PNDPAIYVLLSNVSKA 278
           +++   +HG  + A+   +++L L   P+D     +L   S A
Sbjct: 581 IIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHA 623



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 3/198 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR--QAGIDI 60
           I  YS+C    + Q ++     +N +SWN++I G+       +      +M+   A +  
Sbjct: 246 IDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKA 305

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D FTI +++      S  +  K++H   ++ G  SN  V N  +  Y  CGA+  + +VF
Sbjct: 306 DEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVF 365

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             MD + + SWN+LL G A +   R+A+ L+ QM  + + PD  T   +L AC     + 
Sbjct: 366 DLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLH 425

Query: 181 KGLQ-YFYLMRNDASLEP 197
            G + + + +RN  +++P
Sbjct: 426 YGEEIHGFALRNGLAVDP 443



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 4/175 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR--QAGIDI 60
           I  Y +C    +   V+  +  RN +SWN+II GF   G  +++   F EM   +     
Sbjct: 143 IAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVP 202

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D  T+ +++         ++G  +H L  K+G +  + V N L+ MY+ C  +++A  +F
Sbjct: 203 DVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLF 262

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE--IKPDGTTFLVVLSAC 173
              D++++VSWNS++ G A          L ++MQ  +  +K D  T L VL  C
Sbjct: 263 DKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVC 317



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 6/162 (3%)

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQN-RLVFMYAICGAINDANKVFSSMDER 126
           ++ A G     + G+++H ++       N FV N R++ MY++CG+ +D+  VF  +  +
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLF-EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL-Q 184
           +L  WN+++     +    +A+ +F E +  TE KPD  T   V+ AC  AG +D GL Q
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQ 121

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
             + M     L         A++ + G+ G + EA      M
Sbjct: 122 IIHGMATKMDL-VSDVFVGNALIAMYGKCGLVEEAVKVFEHM 162


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 169/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS   S  D    + S    + +SW ++I G    G  E  L  F E+  +G   D FTI
Sbjct: 295 YSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTI 354

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + ++ A   ++  K G+Q+HA   K G  +   +QN  + MYA CG I+ AN  F     
Sbjct: 355 SIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKN 414

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VSW+ ++   A HG ++EAV LFE M+ + I P+  TFL VL AC H G +++GL+Y
Sbjct: 415 PDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRY 474

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M+ D  +  P  +H   IV LLGRAG L EAESFI        P ++++LLSAC+VH
Sbjct: 475 FEIMKKDHGI-TPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVH 533

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
              +   R A+RV++L P   A YVLL N+         A +IR LM +RG++K+PG SW
Sbjct: 534 KATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSW 593

Query: 306 V 306
           +
Sbjct: 594 I 594



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 5/185 (2%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGS-----GEQALKCFSEMRQAGID 59
           TY++     D   ++  +   N + +NA+IAGF  + +       +A+  F EM+  G+ 
Sbjct: 188 TYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMK 247

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
              FT +SI+ A   I  F+ GKQ+HA IFK    S+ F+ N LV +Y++ G+I D  K 
Sbjct: 248 PSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKC 307

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F S  + D+VSW SL++G   +G     + LF ++  +  KPD  T  ++LSAC +   +
Sbjct: 308 FHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAV 367

Query: 180 DKGLQ 184
             G Q
Sbjct: 368 KSGEQ 372



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 78/149 (52%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN +SWN++I+G+  +G   + +  F E R + + +D FT ++ +   G     + G+ +
Sbjct: 4   RNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLI 63

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HALI   G    V + N L+ MY  CG I+ A  VF S DE D VSWNSL+ G    G +
Sbjct: 64  HALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSN 123

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            E ++L  +M +  +  +       L AC
Sbjct: 124 DEMLRLLVKMLRHGLNLNSYALGSALKAC 152



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 89/163 (54%), Gaps = 7/163 (4%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG--VI 75
           V+ S    + +SWN++IAG+  +GS ++ L+   +M + G++++ + + S + A G    
Sbjct: 98  VFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFS 157

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S  + GK +H    K+G D +V V   L+  YA  G + DA K+F  M + ++V +N+++
Sbjct: 158 SSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMI 217

Query: 136 LG-----CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            G          ++ EA+ LF +MQ   +KP   TF  +L AC
Sbjct: 218 AGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKAC 260



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 20/202 (9%)

Query: 2   QILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           QI  Y++C         +   +  + +SW+ +I+     G  ++A+  F  M+ +GI  +
Sbjct: 392 QICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPN 451

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANK-V 119
           + T   ++ A       +EG +   ++ K  G   NV     +V +    G + +A   +
Sbjct: 452 HITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFI 511

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
             S  E D V W SLL  C  H  +    ++ E++   E++P+     V+L         
Sbjct: 512 MDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERV--IELEPEAAASYVLL--------- 560

Query: 180 DKGLQYFYLMRNDASLEPPRAE 201
                  Y + NDA ++ P  E
Sbjct: 561 -------YNIYNDAGIQMPATE 575



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 32/51 (62%)

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           M +R++VSWNSL+ G    G+  E + LF++ + ++++ D  TF   LS C
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVC 51


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 177/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C      Q +++ +  R+ + WN++I+G       E+A   F +MR+ G+    
Sbjct: 460 IDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTE 519

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            +  S++ +   +S   +G+Q+HA + K GYD NV+V + L+ MYA CG ++DA   F+ 
Sbjct: 520 SSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNC 579

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  +++V+WN ++ G A +G+  +AV+LFE M  T+ KPD  TF+ VL+ C H+G +D+ 
Sbjct: 580 MIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEA 639

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           + YF  M ++  +  P  EHYT ++  LGRAG   E  + I+ M       +++ LL+AC
Sbjct: 640 IAYFNSMESNYGIR-PLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAILWEVLLAAC 698

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            VH N E+   +AK +  L P +P+ YVLLSN+        DA  +R LM +RG+ K  G
Sbjct: 699 VVHHNAELGEFAAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRG 758

Query: 303 YSWV 306
           YSWV
Sbjct: 759 YSWV 762



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 86/152 (56%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN +SWN +IA      S  +AL+ +  M Q G+    FT+ S++ A G ++   +G++ 
Sbjct: 105 RNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRC 164

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H L  K+G D N FV+N L+ MY  CG++ DA ++F  M   + VS+ +++ G A  G  
Sbjct: 165 HGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAV 224

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
            +A++LF +M ++ I+ D      VL AC  A
Sbjct: 225 DDALRLFARMSRSAIRVDPVAVSSVLGACAQA 256



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 99/179 (55%), Gaps = 8/179 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D   ++  + + N++S+ A++ G    G+ + AL+ F+ M ++ I +D   +
Sbjct: 187 YTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAV 246

Query: 66  TSIVGAIG--------VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
           +S++GA          V    +  + +HAL+ + G+DS+  V N L+ MYA    +++A 
Sbjct: 247 SSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAM 306

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
           KVF SM    +VSWN L+ G    G    A+++ + MQ++  +P+  T+  +L++C  A
Sbjct: 307 KVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKA 365



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 106/209 (50%), Gaps = 2/209 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +   +  +WN +++G+      +  ++ F  M+   +  D  T+  I+     +  
Sbjct: 374 MFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGI 433

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + GKQ+H+   K+   +++FV + L+ MY+ CG +  A  +F+ M ERD+V WNS++ G
Sbjct: 434 LELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISG 493

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A H  + EA   F+QM++  + P  +++  ++++C     I +G Q    +  D   + 
Sbjct: 494 LAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQN 553

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSM 226
                 ++++ +  + G +++A  F N M
Sbjct: 554 VYVG--SSLIDMYAKCGNMDDARLFFNCM 580



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 35/167 (20%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+ S+ + + +SWN ++ G+  LG  E+AL+    M+++G + +  T ++++ +      
Sbjct: 308 VFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASC----- 362

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
                                ++ R          +  A  +F  + +  + +WN+LL G
Sbjct: 363 ---------------------IKAR---------DVPSARAMFDKISKPSVTTWNTLLSG 392

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
                  ++ ++LF +MQ   ++PD TT  V+LS C   G ++ G Q
Sbjct: 393 YGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQ 439



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 108/276 (39%), Gaps = 46/276 (16%)

Query: 56  AGIDIDYFTITSIVGAIGVISGFKEGKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAIN 114
           AG+  D F +  +V    +      G   HAL  F+     NV+  N  +      G + 
Sbjct: 39  AGLAADTFLLNRLVELYSL-----SGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLA 93

Query: 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC- 173
            A  +   M +R+ VSWN+++   A      EA++++  M +  + P   T   VLSAC 
Sbjct: 94  AARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACG 153

Query: 174 ----------CHA----------GFIDKGLQYFYLMRNDAS--------LEPPRAEHYTA 205
                     CH            F++ GL   Y      +        +  P    +TA
Sbjct: 154 AVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTA 213

Query: 206 IVGLLGRAGFLNEAESFINSMSRNP---GPSVYKALLSACQVHGNREIAVRSAKRVLDLW 262
           ++G L ++G +++A      MSR+     P    ++L AC      +  V  A R+    
Sbjct: 214 MMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQ-- 271

Query: 263 PNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
               +I+ L+  V K  D     G+    MY +G++
Sbjct: 272 ----SIHALV--VRKGFDSDQHVGNSLIDMYAKGMK 301


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 174/302 (57%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YSR  +    + ++S +  R+ ISW  +IA +       +AL  F+EM+  GID D  T+
Sbjct: 117 YSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTM 176

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +I+ A   +     GK++H    ++G+D +V++ + L+ MYA CG+++ +  VF  + +
Sbjct: 177 ATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRK 236

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++L  WNS++ G A HGY+ EA+ +F +MQ+ +IKP+G TF+ VL AC HAG +++G + 
Sbjct: 237 KNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKR 296

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D S+ PP  EHY  +V LLG+AG L +A   + SM   P   ++ ALL  C++H
Sbjct: 297 FLSMSRDFSI-PPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLH 355

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK-KPGYS 304
            N +IA  +      L PN+   Y LL N+    + W +  +IR  M   G+ K  PG S
Sbjct: 356 RNLKIAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSS 415

Query: 305 WV 306
           W+
Sbjct: 416 WI 417



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           M QA +    FT +S+V A  ++S    G+ +H  I+K G+DS+VFVQ  LV  Y   G 
Sbjct: 1   MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
           I +A +VF  M ERD+ +W +++   A  G    A QLF++M
Sbjct: 61  IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEM 102



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 100/229 (43%), Gaps = 13/229 (5%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
            A++  + N G   +A + F EM +     D F  T+++            +Q+    F 
Sbjct: 49  TALVDFYGNAGKIVEARRVFDEMSER----DVFAWTTMISVHARTGDMSSARQL----FD 100

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
                N    N ++  Y+    +  A  +FS M  RD++SW +++   + +   REA+ +
Sbjct: 101 EMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAV 160

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGL 209
           F +MQ   I PD  T   ++SAC H G +D G + + Y M     L+       +A++ +
Sbjct: 161 FNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIG---SALIDM 217

Query: 210 LGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258
             + G L+++      + R      + +++    VHG  E A+    R+
Sbjct: 218 YAKCGSLDKSLVVFFKL-RKKNLFCWNSIIEGLAVHGYAEEALAMFSRM 265


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 173/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +  + Q ++  +  +  +SWN+II+GF      E+A + FSEM   G+  D+FT 
Sbjct: 499 YCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTY 558

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++     ++  + GKQ+H  I K     + ++ + LV MYA CG + D+  +F    +
Sbjct: 559 ATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARK 618

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VSWN+++ G A HG   EA+++FE+MQ+  + P+  TF+ VL AC H G +D G QY
Sbjct: 619 LDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQY 678

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+LM +   L  P+ EH+  +V +LGR+    EA  FI SM       V+K LLS C++ 
Sbjct: 679 FHLMTSRYKL-VPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIR 737

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + E+A  +A  VL L P+D ++Y+LLSNV   +  W D    R LM    +RK+PG SW
Sbjct: 738 QDVEVAETAASNVLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEPGCSW 797

Query: 306 V 306
           +
Sbjct: 798 I 798



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 93/179 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C + ++   V+  +  R+ +SWNAIIA        E  +   +EM ++G++ D FT 
Sbjct: 398 YGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTY 457

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +   + G  +H    K G   + FV + +V MY  CGAI +A K+   +  
Sbjct: 458 GSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGG 517

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++LVSWNS++ G +    S EA + F +M    +KPD  T+  VL  C +   I+ G Q
Sbjct: 518 QELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQ 576



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 96/178 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  + +D +  +  +   N  + NA++ G    G G +A++ F  M ++G+  D  ++
Sbjct: 297 YAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISL 356

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + +  A   + G+ +G Q+H L  K G+D +V V+N ++ +Y  C A+ +A  VF  M++
Sbjct: 357 SGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQ 416

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           RD VSWN+++     +    + +    +M ++ ++PD  T+  VL AC     ++ GL
Sbjct: 417 RDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGL 474



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 106/215 (49%), Gaps = 5/215 (2%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +++ ++   + +SWN +I+G+C  G    ++    EM + G+ +D  T+  ++ + G + 
Sbjct: 106 SLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLD 165

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G Q+HAL  K G +++V   + LV MY  C +++DA + F  M ER+ VSW + + 
Sbjct: 166 DLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIA 225

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASL 195
           GC  +      ++LF QMQ+  +      +     +C     +    Q + + ++N  S 
Sbjct: 226 GCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSS 285

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRN 229
           +       TAIV +  +AG L +A  +FI     N
Sbjct: 286 DRVVG---TAIVDVYAKAGNLVDARRAFIGLPHHN 317



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 84/183 (45%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D    +  +  RN +SW A IAG        + ++ F +M++ G+ +     
Sbjct: 196 YGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAY 255

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S   +   +      +Q+HA   K  + S+  V   +V +YA  G + DA + F  +  
Sbjct: 256 ASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPH 315

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            ++ + N++++G    G   EA+QLF+ M ++ +  D  +   V SAC       +GLQ 
Sbjct: 316 HNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQV 375

Query: 186 FYL 188
             L
Sbjct: 376 HCL 378



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 91/236 (38%), Gaps = 47/236 (19%)

Query: 38  CNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNV 97
           C+ G+G  A   FS + Q             + A    S    G+  HA +   G+    
Sbjct: 8   CSAGAGFVATATFSHLYQ-------------LCASAGRSALTTGQAAHARMLVSGFMPTT 54

Query: 98  FVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH----------------- 140
           FV N L+ MYA CG    A+ VF +M  RD VSWN++L    H                 
Sbjct: 55  FVSNCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDP 114

Query: 141 --------------HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
                         HG  R +V L  +M +  +  D TT  V+L +C     +  G+Q  
Sbjct: 115 DVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIH 174

Query: 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            L          RA   +A+V + G+   L++A  F + M      S + A ++ C
Sbjct: 175 ALAVKTGLETDVRAG--SALVDMYGKCRSLDDALRFFHGMGERNSVS-WGAAIAGC 227


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 173/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +  S  D + +  S+  R  ++WN +IAG    G  E+ L  ++ M+ AG   D  T 
Sbjct: 239 YIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITF 298

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   ++   +G+Q+HA + K G  S + V + L+ MY+  G + D+ K F   + 
Sbjct: 299 VSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDREN 358

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+V W+S++     HG   EA++LF QM+  +++ +  TFL +L AC H+G  +KG +Y
Sbjct: 359 FDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEY 418

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM     L+ PR EHYT +V LLGRAG L EAE  I SM   P   ++K LL+AC++H
Sbjct: 419 FDLMVKKYKLK-PRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLH 477

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
              E+A R ++ ++ L P D A YVLLSN+  +   W +   IR  M +R +RK+PG SW
Sbjct: 478 KEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISW 537

Query: 306 V 306
           +
Sbjct: 538 L 538



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 128/248 (51%), Gaps = 7/248 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++  +  RN  +WNA+IAG       +QAL  F EM   G   D FT+ S++     +
Sbjct: 148 QKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGL 207

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+++HA + K G++ +  V + L  MY   G+++D  K+  SM  R +V+WN+L+
Sbjct: 208 RSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLI 267

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G A +G   E +  +  M+    +PD  TF+ VLSAC     + +G Q +  +++  AS
Sbjct: 268 AGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGAS 327

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
                    ++++ +  R+G L ++ ++F++    N    ++ ++++A   HG  E A+ 
Sbjct: 328 ---SVLAVVSSLISMYSRSGCLEDSIKAFVD--RENFDVVLWSSMIAAYGFHGRGEEALE 382

Query: 254 SAKRVLDL 261
              ++ DL
Sbjct: 383 LFHQMEDL 390



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 38/181 (20%)

Query: 27  QISWNAIIAGF---CNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           +IS +A +  F   CN G  +QA   F+    +   +    + S +  +G + G   GKQ
Sbjct: 28  KISSSASLQEFTSLCNDGRIKQAYDTFTSEIWSDPSLFSHLLQSCI-KLGSLFG---GKQ 83

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGA------------------------------- 112
           +H+LI   G   + F+ N L+  Y+  G                                
Sbjct: 84  VHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGD 143

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           +  A K+F  M ER++ +WN+++ G     ++++A+ LF++M      PD  T   VL  
Sbjct: 144 LESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRG 203

Query: 173 C 173
           C
Sbjct: 204 C 204



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 8/173 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSR     D    +      + + W+++IA +   G GE+AL+ F +M    ++ + 
Sbjct: 337 ISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANE 396

Query: 63  FTITSIVGAIGVISGFKE-GKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKV 119
            T  S++ A    SG KE G +   L+ K  Y     +++   +V +    G + +A  +
Sbjct: 397 VTFLSLLYACSH-SGLKEKGTEYFDLMVK-KYKLKPRIEHYTCVVDLLGRAGRLEEAEGM 454

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             SM  + D + W +LL  C  H  +  A ++ E++ K  + P      V+LS
Sbjct: 455 IRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIK--LDPLDAASYVLLS 505


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/291 (38%), Positives = 171/291 (58%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +N +  +  R+ +SW A+I G+  +   ++ L  F EM+ A I  D FT+ SI+ A   +
Sbjct: 306 RNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHL 365

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G+ + A I K     + FV N L+ MY  CG +  A ++F++M  RD +SW +++
Sbjct: 366 GALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVI 425

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A +GY  EA+ +F QM K  I PD  T + VL AC H+G +DKG ++F  M     +
Sbjct: 426 FGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGI 485

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           EP  A HY  +V LLGRAG L EA   I +M   P   V+ +LL AC+VH + E+A  +A
Sbjct: 486 EPNVA-HYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAA 544

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++L+L P + A+YVLL N+  A + W+   ++R LM +RGI+K PG S +
Sbjct: 545 QQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLI 595



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 109/209 (52%), Gaps = 2/209 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+ ++   N   WN +I G+  +G    A+  + EM + G+  D +T   ++      + 
Sbjct: 75  VFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTA 134

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K G+++H  I K+G+ SNVFVQN L+ +Y++ G ++ A  VF    + D+V+WN ++ G
Sbjct: 135 VKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISG 194

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
                   E+++LF++M++  + P   T + VLSAC     ++ G +    ++ D  +EP
Sbjct: 195 YNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVK-DLKIEP 253

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSM 226
            R     A++ +    G ++ A    ++M
Sbjct: 254 VRVLE-NALIDMYAACGDMDTALGIFDNM 281



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 31/186 (16%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           ++WN +I+G+      ++++K F EM +  +     T+ S++ A   +     GK++H  
Sbjct: 186 VTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRY 245

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS--- 144
           +  +  +    ++N L+ MYA CG ++ A  +F +M  RD++SW +++ G  + G     
Sbjct: 246 VKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLA 305

Query: 145 ----------------------------REAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
                                       +E + LF +MQ   IKPD  T + +L+AC H 
Sbjct: 306 RNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHL 365

Query: 177 GFIDKG 182
           G ++ G
Sbjct: 366 GALELG 371



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 4/167 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C +      +++++  R++ISW A+I G    G GE+AL  FS+M +A I  D  T 
Sbjct: 397 YFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTC 456

Query: 66  TSIVGAIGVISGFKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A        +GK+  A +  + G + NV     +V +    G + +A++V  +M 
Sbjct: 457 IGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMP 516

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
            + + + W SLL  C  H    E  ++  Q Q  E++P+     V+L
Sbjct: 517 VKPNSIVWGSLLGACRVH-RDEEMAEMAAQ-QILELEPENGAVYVLL 561


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 178/306 (58%), Gaps = 3/306 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C   +  + ++ S++ +++++WNA+I G+   G  E+A+K F +MR +    D 
Sbjct: 270 IHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQ 329

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+  I+ A   I     GKQ+     + G+  +V+V   LV MYA CG++++A +VF  
Sbjct: 330 ITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYG 389

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFID 180
           M +++ VSWN+++   A HG ++EA+ LF+ M  +   + P+  TF+ VLSAC HAG +D
Sbjct: 390 MPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVD 449

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +G + F++M +   L  P+ EHY+ +V L  RAG L EA  F+ +M   P   +  ALL 
Sbjct: 450 EGRRLFHMMSSSFGL-VPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLG 508

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           ACQ   N +I+ R  K +L+L P++   YV+ S +      WDD+  +R LM  +G+ K 
Sbjct: 509 ACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKT 568

Query: 301 PGYSWV 306
           PG SW+
Sbjct: 569 PGCSWI 574



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 144/277 (51%), Gaps = 11/277 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+RC    D + V+  +  ++ +SWN++I+G+  +    +A+  F EM +AG   + 
Sbjct: 169 ITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNE 228

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            ++ S++GA G +   K G  +   + +     N F+ + L+ MY  CG +  A ++F S
Sbjct: 229 MSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDS 288

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ++D V+WN+++ G A +G S EA++LF+ M+ +   PD  T + +LSAC   G +D G
Sbjct: 289 MKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLG 348

Query: 183 LQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
            Q    +   AS    + + Y  TA+V +  + G L+ A      M +    S + A++S
Sbjct: 349 KQ----VEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVS-WNAMIS 403

Query: 241 ACQVHGNREIAVRSAKRVLD----LWPNDPAIYVLLS 273
           A   HG  + A+   K +++    + PND     +LS
Sbjct: 404 ALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLS 440



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 117/237 (49%), Gaps = 6/237 (2%)

Query: 19  YSSVRTRNQISWNAIIAGFCNL-GSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +S++    + S+N +I G          AL+ +S M+  G+  +  T   +  A   +  
Sbjct: 83  FSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLA 142

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G+  H  + + G D +  V + L+ MYA CG + DA KVF  + ++DLVSWNS++ G
Sbjct: 143 VENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISG 202

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY-FYLMRNDASLE 196
            +   ++ EAV LF +M +   +P+  + + VL AC   G +  G     +++ N  +L 
Sbjct: 203 YSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLN 262

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
                  +A++ + G+ G L  A    +SM +    + + A+++    +G  E A++
Sbjct: 263 YFMG---SALIHMYGKCGDLVSARRIFDSMKKKDKVT-WNAMITGYAQNGMSEEAIK 315


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 180/305 (59%), Gaps = 8/305 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      +N++  +     +SWN +I+G+   G   +AL  FSEMR++ ++ D  T 
Sbjct: 353 YFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITF 412

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A   ++  ++G+++H LI +   D+N  V   L+ MYA CGA+++A  VF  + +
Sbjct: 413 TSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPK 472

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDLVSW S++     HG +  A++LF +M ++ +KPD  TFL +LSAC HAG +D+G  Y
Sbjct: 473 RDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYY 532

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNP----GPSVYKALLSA 241
           F  M N   +  PR EHY+ ++ LLGRAG L+EA   +    +NP       +   L SA
Sbjct: 533 FNQMVNVYGI-IPRVEHYSCLIDLLGRAGRLHEAYEILQ---QNPEIRDDVELLSTLFSA 588

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++H N ++    A+ ++D  P+D + Y+LLSN+  +   WD+   +R+ M   G++K P
Sbjct: 589 CRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNP 648

Query: 302 GYSWV 306
           G SW+
Sbjct: 649 GCSWI 653



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 130/275 (47%), Gaps = 5/275 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C        V+  +  +  ++WN++I+G+   G     ++ F  M   G+     T+
Sbjct: 252 YGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTL 311

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++      +   EGK +H    +    S+VF+ + L+ +Y  CG +  A  +F  + +
Sbjct: 312 SSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPK 371

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
             +VSWN ++ G    G   EA+ LF +M+K+ ++PD  TF  VL+AC     ++KG + 
Sbjct: 372 SKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEI 431

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             L+  +  L+        A++ +  + G ++EA S    + +    S + ++++A   H
Sbjct: 432 HNLII-EKKLDNNEVV-MGALLDMYAKCGAVDEAFSVFKCLPKRDLVS-WTSMITAYGSH 488

Query: 246 GNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
           G   +A+     +L  ++ P+      +LS    A
Sbjct: 489 GQAYVALELFAEMLQSNMKPDRVTFLAILSACGHA 523



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 99/187 (52%), Gaps = 1/187 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C++      +++ +  ++   WN +I+ +   G+ ++AL+ F  MR+ G + +  TI
Sbjct: 151 YAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTI 210

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+ + +   +     G ++H  +   G+  + F+ + LV MY  CG +  A +VF  M +
Sbjct: 211 TTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPK 270

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           + +V+WNS++ G    G S   +QLF++M    +KP  TT   ++  C  +  + +G   
Sbjct: 271 KTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFV 330

Query: 185 YFYLMRN 191
           + Y +RN
Sbjct: 331 HGYTIRN 337



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 119/245 (48%), Gaps = 9/245 (3%)

Query: 18  VYSSVRTRNQIS-WNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDIDYFTITSIVGAIGVI 75
           V+ ++    +IS WN ++AG+       +AL+ F ++     +  D +T  S++ A G +
Sbjct: 60  VFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGL 119

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             +  GK +H  + K G   ++ V + LV MYA C A   A  +F+ M E+D+  WN+++
Sbjct: 120 YKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVI 179

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
                 G  +EA++ F  M++   +P+  T    +S+C     +++G++    + N   L
Sbjct: 180 SCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFL 239

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALLSACQVHGNREIAVR 253
                   +A+V + G+ G L  A   I    + P  +V  + +++S   + G+    ++
Sbjct: 240 LDSFIS--SALVDMYGKCGHLEMA---IEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQ 294

Query: 254 SAKRV 258
             KR+
Sbjct: 295 LFKRM 299


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/281 (38%), Positives = 165/281 (58%), Gaps = 1/281 (0%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N  SWNA+I G    G  E+AL+  S M+ +G   +  TITS++ A   +   + GKQ+H
Sbjct: 279 NYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIH 338

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
             IF+  +  ++     LVFMYA CG +  + +VFS M +RD VSWN++++  + HG   
Sbjct: 339 GYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGE 398

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205
           EA+ LF +M  + ++P+  TF  VLS C H+  +D+GL  F  M  D S+EP  A+H++ 
Sbjct: 399 EALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPD-ADHHSC 457

Query: 206 IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265
           +V +L RAG L EA  FI  M   P    + ALL  C+V+ N E+   +A R+ ++  ++
Sbjct: 458 MVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDN 517

Query: 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           P  YVLLSN+  +   W +A + R LM +RG+ K PG SW+
Sbjct: 518 PGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWI 558



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 140/315 (44%), Gaps = 50/315 (15%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C  S   + V+  +  R+ ISW ++ + + N G   +AL  F +M   G   +  T+
Sbjct: 123 YGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTV 182

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+ A   +   K G+++H  + + G   NVFV + LV MYA C +I  A  VF SM  
Sbjct: 183 SSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSR 242

Query: 126 RDLVSWNSLLL-----------------------------------GCAHHGYSREAVQL 150
           RD VSWN L+                                    GC  +G + +A+++
Sbjct: 243 RDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEV 302

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN----DASLEPPRAEHYTA 205
             +MQ +  KP+  T   VL AC +   +  G Q + Y+ R+    D +         TA
Sbjct: 303 LSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTT-------TA 355

Query: 206 IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWP 263
           +V +  + G L  +    + M++    S +  ++ A  +HGN E A+   + ++D  + P
Sbjct: 356 LVFMYAKCGDLELSRRVFSMMTKRDTVS-WNTMIIATSMHGNGEEALLLFREMVDSGVRP 414

Query: 264 NDPAIYVLLSNVSKA 278
           N      +LS  S +
Sbjct: 415 NSVTFTGVLSGCSHS 429



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 5/228 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDID 61
           I  YS        ++++  +   +  +W  +I+     G   +A++ +++ R    ++ D
Sbjct: 18  IKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPD 77

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
              + S+  A   +      K++H    + G+ S+V + N L+ MY  C     A  VF 
Sbjct: 78  KLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFE 137

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M  RD++SW S+     + G  REA+  F +M     +P+  T   +L AC     +  
Sbjct: 138 GMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKS 197

Query: 182 GLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
           G + + +++RN            +A+V +      + +A+   +SMSR
Sbjct: 198 GREVHGFVVRNGMG---GNVFVSSALVNMYASCLSIRQAQLVFDSMSR 242



 Score = 44.3 bits (103), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 14/144 (9%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++C      + V+S +  R+ +SWN +I      G+GE+AL  F EM  +G+  + 
Sbjct: 357 VFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNS 416

Query: 63  FTITSIVGAIGVISGFKEGKQMHA--LIF-KIGYDSNVFV----QNRLVFMYAICGAIND 115
            T T      GV+SG    + +    LIF  +  D +V       + +V + +  G + +
Sbjct: 417 VTFT------GVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEE 470

Query: 116 ANKVFSSMD-ERDLVSWNSLLLGC 138
           A +    M  E    +W +LL GC
Sbjct: 471 AYEFIKKMPIEPTAGAWGALLGGC 494



 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 102 RLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ-KTEIK 160
           + + +Y+  G +  A  +F  + + DL +W  L+     HG S EA+Q +   + K  ++
Sbjct: 16  KFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVE 75

Query: 161 PDGTTFLVVLSAC 173
           PD    L V  AC
Sbjct: 76  PDKLLLLSVAKAC 88


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 173/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    + Q ++  +  +  +SWN+II+GF      E+A K FSEM   G+  D+FT 
Sbjct: 484 YCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTY 543

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++     ++  + GKQ+H  I K     + ++ + LV MYA CG + D+  +F    +
Sbjct: 544 ATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQK 603

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VSWN+++ G A HG   EA+++FE+MQ+  + P+  TF+ VL AC H G +D G +Y
Sbjct: 604 LDFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRY 663

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           FYLM +   LE P+ EH+  +V +LGR+    EA  FI SM       ++K LLS C++ 
Sbjct: 664 FYLMTSRYKLE-PQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIR 722

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + E+A  +A  VL L P+D ++Y+LLSNV   +  W D    R LM    ++K+PG SW
Sbjct: 723 QDVEVAETAASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSW 782

Query: 306 V 306
           +
Sbjct: 783 I 783



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 92/179 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C + ++   V+  +  R+ +SWNAIIA        E  +   +EM + G++ D FT 
Sbjct: 383 YGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTY 442

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +   + G  +H    K G   + FV + +V MY  CG I +A K+   +  
Sbjct: 443 GSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGG 502

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++LVSWNS++ G + +  S EA + F +M    +KPD  T+  VL  C +   I+ G Q
Sbjct: 503 QELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQ 561



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 16/213 (7%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++ DS +D +  + S+      + NA++ G    G G +AL+ F  M ++GI  D  +
Sbjct: 281 VYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVS 340

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++ +  A   + G+ +G Q+H L  K G+D +V V+N ++ +Y  C A+ +A  VF  M+
Sbjct: 341 LSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEME 400

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +RD VSWN+++     +    + +    +M +  ++PD  T+  VL AC        GLQ
Sbjct: 401 QRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKAC-------AGLQ 453

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLN 217
                    SLE     H  AI   LG   F++
Sbjct: 454 ---------SLEYGSVVHGKAIKSGLGLDAFVS 477



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 81/157 (51%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +++ ++   + +SWNA+++G+C  G    ++    EM + G+  D  T+  ++ A G + 
Sbjct: 91  SLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLE 150

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G Q+HA+  K G + +V   + LV MY  C ++ DA + F  M ER+ VSW + + 
Sbjct: 151 DLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIA 210

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           GC  +      ++LF QMQ+  +      +  V  +C
Sbjct: 211 GCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSC 247



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 85/179 (47%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D    +  +  RN +SW A IAG        + L+ F +M++ G+ +     
Sbjct: 181 YGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAY 240

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+  +   I+     +Q+HA   K  + ++  V   +V +YA   ++ DA + F S+  
Sbjct: 241 ASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPN 300

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             + + N++++G    G   EA+QLF+ M ++ I  D  +   V SAC       +GLQ
Sbjct: 301 HTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQ 359



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 34/198 (17%)

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S    G+  HA +   G+    FV N L+ MYA CG    A  VF  M  RD VSWN++L
Sbjct: 18  SALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTML 77

Query: 136 LGCAHHGYS-------------------------------REAVQLFEQMQKTEIKPDGT 164
              AH G +                               R++V L  +M +  + PD T
Sbjct: 78  TAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRT 137

Query: 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
           T  V+L AC     +  G+Q   +          RA   +A+V + G+   L +A  F +
Sbjct: 138 TLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAG--SALVDMYGKCRSLEDALRFFH 195

Query: 225 SMSRNPGPSVYKALLSAC 242
            M      S + A ++ C
Sbjct: 196 GMGERNSVS-WGAAIAGC 212


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 169/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS   S  D    + S    + +SW ++I G    G  E  L  F E+  +G   D FTI
Sbjct: 374 YSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTI 433

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + ++ A   ++  K G+Q+HA   K G  +   +QN  + MYA CG I+ AN  F     
Sbjct: 434 SIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKN 493

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VSW+ ++   A HG ++EAV LFE M+ + I P+  TFL VL AC H G +++GL+Y
Sbjct: 494 PDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRY 553

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M+ D  +  P  +H   IV LLGRAG L EAESFI        P ++++LLSAC+VH
Sbjct: 554 FEIMKKDHGI-TPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVH 612

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
              +   R A+RV++L P   A YVLL N+         A +IR LM +RG++K+PG SW
Sbjct: 613 KATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSW 672

Query: 306 V 306
           +
Sbjct: 673 I 673



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 5/185 (2%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGS-----GEQALKCFSEMRQAGID 59
           TY++     D   ++  +   N + +NA+IAGF  + +       +A+  F EM+  G+ 
Sbjct: 267 TYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMK 326

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
              FT +SI+ A   I  F+ GKQ+HA IFK    S+ F+ N LV +Y++ G+I D  K 
Sbjct: 327 PSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKC 386

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F S  + D+VSW SL++G   +G     + LF ++  +  KPD  T  ++LSAC +   +
Sbjct: 387 FHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAV 446

Query: 180 DKGLQ 184
             G Q
Sbjct: 447 KSGEQ 451



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 86/168 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C  +   + ++  +  RN +SWN++I+G+  +G   + +  F E R + + +D FT 
Sbjct: 64  YCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTF 123

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++ +   G     + G+ +HALI   G    V + N L+ MY  CG I+ A  VF S DE
Sbjct: 124 SNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADE 183

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            D VSWNSL+ G    G + E ++L  +M +  +  +       L AC
Sbjct: 184 LDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKAC 231



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 89/163 (54%), Gaps = 7/163 (4%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG--VI 75
           V+ S    + +SWN++IAG+  +GS ++ L+   +M + G++++ + + S + A G    
Sbjct: 177 VFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFS 236

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S  + GK +H    K+G D +V V   L+  YA  G + DA K+F  M + ++V +N+++
Sbjct: 237 SSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMI 296

Query: 136 LG-----CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            G          ++ EA+ LF +MQ   +KP   TF  +L AC
Sbjct: 297 AGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKAC 339



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 62/117 (52%)

Query: 57  GIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
           G+ +D  T T +V           GK  H  + K  +   +F+ N L++MY  CG  + A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            K+F  M +R++VSWNSL+ G    G+  E + LF++ + ++++ D  TF   LS C
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVC 130



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 20/202 (9%)

Query: 2   QILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           QI  Y++C         +   +  + +SW+ +I+     G  ++A+  F  M+ +GI  +
Sbjct: 471 QICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPN 530

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANK-V 119
           + T   ++ A       +EG +   ++ K  G   NV     +V +    G + +A   +
Sbjct: 531 HITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFI 590

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
             S  E D V W SLL  C  H  +    ++ E++   E++P+     V+L         
Sbjct: 591 MDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERV--IELEPEAAASYVLL--------- 639

Query: 180 DKGLQYFYLMRNDASLEPPRAE 201
                  Y + NDA ++ P  E
Sbjct: 640 -------YNIYNDAGIQMPATE 654


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 177/302 (58%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+   + Q ++ ++  ++ + W A+I+ +   G  E+ +  FS+MR+ G+  D  T 
Sbjct: 387 YAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATF 446

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A   ++    G+Q+H+L+ + G+ SNV+  + L+  YA CG + DA K F  M E
Sbjct: 447 ASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPE 506

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWN+L+   A +G     +  F+QM ++  KPD  +FL VLSAC H GF+++ L +
Sbjct: 507 RNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWH 566

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M     + P R EHYT++V +L R G  +EAE  +  M   P   ++ ++L++C++H
Sbjct: 567 FNSMTQIYEVTPKR-EHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIH 625

Query: 246 GNREIAVRSAKRVLDLWP-NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
            N E+A ++A R+ ++    D A Y+ +SN+      WD+   ++  M +RG+RK P YS
Sbjct: 626 KNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYS 685

Query: 305 WV 306
           WV
Sbjct: 686 WV 687



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 89/157 (56%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R  +SW  +I G+      ++A + +++MR+ GI+ DY T+ +++   G +
Sbjct: 94  RELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGEL 153

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                  Q+H  + K+GY+ N+ V N LV  Y     +  A+++F  M  +D V++NSL+
Sbjct: 154 ETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLM 213

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            G ++ G + EA++LF ++  + IKP   TF  +LSA
Sbjct: 214 TGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSA 250



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 83/154 (53%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  ++ +++N+++ G+ N G  E+A++ F E+  +GI    FT  +++ A   +  
Sbjct: 197 LFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDD 256

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K G+Q+H  + K  +  NVFV N L+  Y+    +++  K+F  M E D +S+N ++  
Sbjct: 257 TKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITS 316

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            A +G  +E+  LF ++Q T        F  +LS
Sbjct: 317 YAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLS 350



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 115/255 (45%), Gaps = 5/255 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+ D   +   ++  +   + IS+N +I  +   G  +++   F +++    D   F  
Sbjct: 286 YSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPF 345

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++         + G+Q+H     +G +    V+N LV MYA C    +A K+F ++  
Sbjct: 346 ATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIAC 405

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +  V W +++      G   E + +F  M++T +  D  TF  +L AC +   I  G Q 
Sbjct: 406 KSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQL 465

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSACQV 244
             L+     +    +   +A++    + G + +A +SF     RN     + AL+SA   
Sbjct: 466 HSLLIRSGFMSNVYSG--SALLDTYAKCGCMTDAIKSFGEMPERNSVS--WNALISAYAQ 521

Query: 245 HGNREIAVRSAKRVL 259
           +GN +  + S ++++
Sbjct: 522 NGNVDGTLNSFQQMI 536



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 121/295 (41%), Gaps = 20/295 (6%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           TY++C    D    +  +  RN +SWNA+I+ +   G+ +  L  F +M Q+G   D  +
Sbjct: 487 TYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVS 546

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC--GAINDANKVFSS 122
             S++ A     GF E    H       Y+     ++    +  +C  G  ++A K+ + 
Sbjct: 547 FLSVLSACSH-CGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTE 605

Query: 123 MD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           M  E   + W+S+L  C  H     A +  +++   E   D   ++ + +    AG  D 
Sbjct: 606 MPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDN 665

Query: 182 GLQYFYLMRNDASLEPP-----RAEHYTAIVGLLGRA-GFLNEAESFINSMSRNPGPSVY 235
             +    MR+    + P       +H T +     ++   + +    IN++S+      Y
Sbjct: 666 VAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGY 725

Query: 236 KALLSACQVHGNRE-IAVRSAKRVLDLWP------NDP--AIYVLLSNVSKATDC 281
           K   + C +H   E I + S K   + +       N P  +  V++ N+   TDC
Sbjct: 726 KP-DTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDC 779



 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 78  FKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            + G  +HA  +F      N    N ++  +   G ++ A ++F  M ER  VSW  L+ 
Sbjct: 54  LERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIG 113

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           G      S+EA +L+  M++  I+PD  T + +LS
Sbjct: 114 GYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLS 148


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 173/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  + + ++  +  ++ +SW  +I      G  ++    F ++  +G+  + +T 
Sbjct: 241 YGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTF 300

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   ++  + GK++H  + ++GYD   F  + LV +Y+ CG    A +VF+ M  
Sbjct: 301 AGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPR 360

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            DLVSW SL++G A +G    A+Q FE + ++  KPD  TF+ VLSAC HAG +D GL+Y
Sbjct: 361 PDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEY 420

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ ++    L    A+HY  ++ LL R+G   EAE+ I++M   P   ++ +LL  C++H
Sbjct: 421 FHSVKEKHGL-VHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIH 479

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+A R+AK + +L P +PA Y+ LSN+      W +   +R  M NRGI KKPG SW
Sbjct: 480 GNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSW 539

Query: 306 V 306
           +
Sbjct: 540 I 540



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 131/284 (46%), Gaps = 37/284 (13%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ------- 55
           I  Y++C S +D Q ++  +  ++  SWN +I+G+ N+G  EQA K F EM         
Sbjct: 105 IHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWN 164

Query: 56  -------------AGIDI------------DYFTITSIVGAIGVISGFKEGKQMHALIFK 90
                          +D+            + FT++S + A   IS  + GK++H  + +
Sbjct: 165 AVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIR 224

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
            G + +  V   L+ +Y  CG++N+A  +F  M ++D+VSW +++  C   G  +E   L
Sbjct: 225 SGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSL 284

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGL 209
           F  +  + ++P+  TF  VL+AC        G + + Y+ R       P +   +A+V +
Sbjct: 285 FRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYD---PFSFAASALVHV 341

Query: 210 LGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
             + G    A    N M R P    + +L+     +G  ++A++
Sbjct: 342 YSKCGNTETARRVFNQMPR-PDLVSWTSLIVGYAQNGQPDMALQ 384



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           +  II  FC     ++A+     + Q    +     ++++ A       + GK++HA   
Sbjct: 35  FEEIIELFCQQNRLKEAVDYLHRIPQPSPRL----YSTLIAACLRHRKLELGKRVHAHTK 90

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
              +   + + NRL+ MYA CG++ DA  +F  + ++DL SWN+++ G A+ G   +A +
Sbjct: 91  ASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARK 150

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           LF++M       D  ++  V+S     G+  + L  F +M+ + S
Sbjct: 151 LFDEMPHR----DNFSWNAVISGYVSQGWYMEALDLFRMMQENES 191


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 177/302 (58%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+   + Q ++ ++  ++ + W A+I+ +   G  E+ +  FS+MR+ G+  D  T 
Sbjct: 387 YAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATF 446

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A   ++    G+Q+H+L+ + G+ SNV+  + L+  YA CG + DA K F  M E
Sbjct: 447 ASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPE 506

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWN+L+   A +G     +  F+QM ++  KPD  +FL VLSAC H GF+++ L +
Sbjct: 507 RNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWH 566

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M     + P R EHYT++V +L R G  +EAE  +  M   P   ++ ++L++C++H
Sbjct: 567 FNSMTQIYEVTPKR-EHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIH 625

Query: 246 GNREIAVRSAKRVLDLWP-NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
            N E+A ++A R+ ++    D A Y+ +SN+      WD+   ++  M +RG+RK P YS
Sbjct: 626 KNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYS 685

Query: 305 WV 306
           WV
Sbjct: 686 WV 687



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 89/157 (56%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R  +SW  +I G+      ++A + +++MR+ GI+ DY T+ +++   G +
Sbjct: 94  RELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGEL 153

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                  Q+H  + K+GY+ N+ V N LV  Y     +  A+++F  M  +D V++NSL+
Sbjct: 154 ETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLM 213

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            G ++ G + EA++LF ++  + IKP   TF  +LSA
Sbjct: 214 TGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSA 250



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 83/154 (53%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  ++ +++N+++ G+ N G  E+A++ F E+  +GI    FT  +++ A   +  
Sbjct: 197 LFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDD 256

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K G+Q+H  + K  +  NVFV N L+  Y+    +++  K+F  M E D +S+N ++  
Sbjct: 257 TKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITS 316

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            A +G  +E+  LF ++Q T        F  +LS
Sbjct: 317 YAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLS 350



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 115/255 (45%), Gaps = 5/255 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+ D   +   ++  +   + IS+N +I  +   G  +++   F +++    D   F  
Sbjct: 286 YSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPF 345

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++         + G+Q+H     +G +    V+N LV MYA C    +A K+F ++  
Sbjct: 346 ATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIAC 405

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +  V W +++      G   E + +F  M++T +  D  TF  +L AC +   I  G Q 
Sbjct: 406 KSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQL 465

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSACQV 244
             L+     +    +   +A++    + G + +A +SF     RN     + AL+SA   
Sbjct: 466 HSLLIRSGFMSNVYSG--SALLDTYAKCGCMTDAIKSFGEMPERNSVS--WNALISAYAQ 521

Query: 245 HGNREIAVRSAKRVL 259
           +GN +  + S ++++
Sbjct: 522 NGNVDGTLNSFQQMI 536



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 121/295 (41%), Gaps = 20/295 (6%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           TY++C    D    +  +  RN +SWNA+I+ +   G+ +  L  F +M Q+G   D  +
Sbjct: 487 TYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVS 546

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC--GAINDANKVFSS 122
             S++ A     GF E    H       Y+     ++    +  +C  G  ++A K+ + 
Sbjct: 547 FLSVLSACSH-CGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTE 605

Query: 123 MD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           M  E   + W+S+L  C  H     A +  +++   E   D   ++ + +    AG  D 
Sbjct: 606 MPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDN 665

Query: 182 GLQYFYLMRNDASLEPP-----RAEHYTAIVGLLGRA-GFLNEAESFINSMSRNPGPSVY 235
             +    MR+    + P       +H T +     ++   + +    IN++S+      Y
Sbjct: 666 VAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGY 725

Query: 236 KALLSACQVHGNRE-IAVRSAKRVLDLWP------NDP--AIYVLLSNVSKATDC 281
           K   + C +H   E I + S K   + +       N P  +  V++ N+   TDC
Sbjct: 726 KP-DTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDC 779



 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 78  FKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            + G  +HA  +F      N    N ++  +   G ++ A ++F  M ER  VSW  L+ 
Sbjct: 54  LERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIG 113

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           G      S+EA +L+  M++  I+PD  T + +LS
Sbjct: 114 GYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLS 148


>gi|357512007|ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355501307|gb|AES82510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 650

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S      ++ S    + +S   I+  F   G  E+A++ F++M   G+++D   +
Sbjct: 296 YSKCGSLDAAWQIFESAEELDGVSLTVILVAFAQNGFEEEAIQIFTKMVALGMEVDANMV 355

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++G  GV +    GKQ+H+LI K  +  N FV N LV MY+ CG ++D+  VF  M +
Sbjct: 356 SAVLGVFGVGTYLALGKQIHSLIIKKNFCENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQ 415

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++ VSWNS++   A HG   +A+Q +E+M+   + P   TFL +L AC HAG ++KG++ 
Sbjct: 416 KNSVSWNSVIAAFARHGDGFKALQFYEEMRVEGVAPTDVTFLSLLHACSHAGLVEKGMEL 475

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M ND  +  PR+EHY  +V +LGRAG LNEA+ FI  +  + G  V++ALL AC +H
Sbjct: 476 LESMTNDHGIS-PRSEHYACVVDMLGRAGHLNEAKKFIEGLPEHGGVLVWQALLGACSIH 534

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E+   +A R+    P  PA YVL++N+  +   W +       M   G+ K+ G SW
Sbjct: 535 GDSEMGKYAADRLFSAAPASPAPYVLMANIYSSEGNWKERASSIKRMKEMGVAKEVGISW 594

Query: 306 V 306
           +
Sbjct: 595 I 595



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 138/279 (49%), Gaps = 6/279 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDID 61
           I +Y +C+     + V+  +  RN ++W A+I+G       E +L+ F++MR  G +  +
Sbjct: 191 ITSYFKCECFSQGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPN 250

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             T  S + A   +   ++G+++H L++K+G  S++ +++ L+ +Y+ CG+++ A ++F 
Sbjct: 251 VLTYLSSLMACSGLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQIFE 310

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           S +E D VS   +L+  A +G+  EA+Q+F +M    ++ D      VL       ++  
Sbjct: 311 SAEELDGVSLTVILVAFAQNGFEEEAIQIFTKMVALGMEVDANMVSAVLGVFGVGTYLAL 370

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G Q   L+      E P   +   +V +  + G L+++      M++    S + ++++A
Sbjct: 371 GKQIHSLIIKKNFCENPFVGN--GLVNMYSKCGDLSDSLLVFYQMTQKNSVS-WNSVIAA 427

Query: 242 CQVHGN--REIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
              HG+  + +      RV  + P D     LL   S A
Sbjct: 428 FARHGDGFKALQFYEEMRVEGVAPTDVTFLSLLHACSHA 466



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 131/268 (48%), Gaps = 20/268 (7%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG---IDIDY 62
           YS+C    +  NV+  +  R+ +SWN +I+GF   G  + + K F +M ++       D 
Sbjct: 87  YSKCGEFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESNRVCCRFDK 146

Query: 63  FTITSIV-GAIGVISGFKEG--KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            T+T+++ G  G+  G      + +H L+F  G++  + V N L+  Y  C   +   KV
Sbjct: 147 ATLTTMLSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITSYFKCECFSQGRKV 206

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT-EIKPDGTTFLVVLSACCHAGF 178
           F  M ER++V+W +++ G A + +  ++++LF QM+    + P+  T+L  L AC     
Sbjct: 207 FDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYLSSLMACSGLQV 266

Query: 179 IDKGLQYFYL-----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS 233
           +  G +   L     M++D  +E       +A++ L  + G L+ A     S     G S
Sbjct: 267 LRDGQKIHGLLWKLGMQSDLCIE-------SALMDLYSKCGSLDAAWQIFESAEELDGVS 319

Query: 234 VYKALLSACQVHGNREIAVRSAKRVLDL 261
           +   L++  Q +G  E A++   +++ L
Sbjct: 320 LTVILVAFAQ-NGFEEEAIQIFTKMVAL 346



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 11/125 (8%)

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFK----IGYDSN----VFVQNRLVFMYAICG 111
           +++  +TS++   G       G  +HA I K      +D +    +F+ N L+ MY+ CG
Sbjct: 32  LNHADLTSLLTLCGRDRNLTLGSSIHARIIKQPPSFDFDGSQRNALFIWNSLLSMYSKCG 91

Query: 112 AINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE---IKPDGTTFLV 168
              +A  VF  M  RD VSWN+++ G   +G    + + F+QM ++     + D  T   
Sbjct: 92  EFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESNRVCCRFDKATLTT 151

Query: 169 VLSAC 173
           +LS C
Sbjct: 152 MLSGC 156


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 171/304 (56%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++  S  D + V+  ++ R+ +SWN +I  F   G G +A   F +M+  G   D 
Sbjct: 272 VQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDA 331

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
               SI+ A       +  K++H      G + +V V   LV MY+  G+I+DA  VF  
Sbjct: 332 IMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDR 391

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  R++VSWN+++ G A HG  ++A+++F +M    +KPD  TF+ VLSAC HAG +D+G
Sbjct: 392 MKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEG 451

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
              +  M     +EP    H   +V LLGRAG L EA+ FI++M+ +P  + + ALL +C
Sbjct: 452 RSQYLAMTQVYGIEPD-VSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSC 510

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + +GN E+    AK  L L P + A YVLLSN+      WD    +RT+M  RGIRK+PG
Sbjct: 511 RTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPG 570

Query: 303 YSWV 306
            SW+
Sbjct: 571 RSWI 574



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 134/275 (48%), Gaps = 5/275 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  + + ++ ++   + ISW  +I  +   G+G++A +   +M Q G   +  T 
Sbjct: 174 YGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITY 233

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A       K  K++H      G + +V V   LV MYA  G+I+DA  VF  M  
Sbjct: 234 VSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKV 293

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWN ++   A HG   EA  LF QMQ    KPD   FL +L+AC  AG ++  ++ 
Sbjct: 294 RDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALE-WVKK 352

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            +    D+ LE       TA+V +  ++G +++A    + M      S + A++S    H
Sbjct: 353 IHRHALDSGLEVD-VRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVS-WNAMISGLAQH 410

Query: 246 GNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
           G  + A+   +R+    + P+      +LS  S A
Sbjct: 411 GLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHA 445



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 2/223 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y  C    + + V+ ++  ++  SWNA+IAG+      E A++ F EM   G+  +  T
Sbjct: 72  VYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGT 131

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
              I+ A   +S  K GK++HA I   G +S+V V   L+ MY  CG+IN+A ++F ++ 
Sbjct: 132 YMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLM 191

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             D++SW  ++   A  G  +EA +L  QM++   KP+  T++ +L+AC   G + K ++
Sbjct: 192 NHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGAL-KWVK 250

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
             +    DA LE       TA+V +  ++G +++A    + M 
Sbjct: 251 RVHRHALDAGLELD-VRVGTALVQMYAKSGSIDDARVVFDRMK 292



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 84/172 (48%), Gaps = 2/172 (1%)

Query: 55  QAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN 114
           Q G+  D F    ++            KQ+H  I K   + N  V N L+ +Y  CG + 
Sbjct: 21  QRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQ 80

Query: 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
           +A  VF ++ ++   SWN+++ G   H ++ +A++LF +M    ++P+  T++++L AC 
Sbjct: 81  EARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACA 140

Query: 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
               +  G +    +R+       R    TA++ + G+ G +NEA    +++
Sbjct: 141 SLSALKWGKEVHACIRHGGLESDVRVG--TALLRMYGKCGSINEARRIFDNL 190


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/291 (38%), Positives = 175/291 (60%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R  +SW  +I G+   G    AL  F EM+  GI+ D  ++ S++ A   +
Sbjct: 192 REVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQL 251

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + GK +H    K G+  N  V N LV MYA CG I++A  +F+ M E+D++SW++++
Sbjct: 252 GALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMI 311

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A+HG    A+++FE MQK  + P+G TF+ VLSAC HAG  ++GL+YF +MR D  L
Sbjct: 312 GGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHL 371

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           E P+ EHY  +V LLGR+G + +A   I  M   P    + +LLS+C++H N EIAV + 
Sbjct: 372 E-PQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAM 430

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++L L P +   YVLL+N+    D W+   ++R L+ ++ I+K PG S +
Sbjct: 431 EQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLI 481



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 121/280 (43%), Gaps = 38/280 (13%)

Query: 9   CD--SSLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFT 64
           CD  S +D+   ++  +   N  S+NAII  + +      A+  F++M        D FT
Sbjct: 49  CDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFT 108

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
              ++ +   +   + G+Q+HA + K G  ++   +N L+ MY  CG ++ A +V+  M 
Sbjct: 109 FPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMT 168

Query: 125 ERDLVSWNSLLLGCAH--------------------------HGYSR-----EAVQLFEQ 153
           ERD VSWNSL+ G                             +GY+R     +A+ +F +
Sbjct: 169 ERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFRE 228

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA 213
           MQ   I+PD  + + VL AC   G ++ G            L+   A  + A+V +  + 
Sbjct: 229 MQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLK--NAGVFNALVEMYAKC 286

Query: 214 GFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           G ++EA    N M      S +  ++     HG    A+R
Sbjct: 287 GCIDEAWGLFNQMIEKDVIS-WSTMIGGLANHGKGYAAIR 325



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 4/166 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    +   +++ +  ++ ISW+ +I G  N G G  A++ F +M++AG+  +  T 
Sbjct: 283 YAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTF 342

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVFSSM 123
             ++ A      + EG + +  + ++ Y     +++   LV +    G +  A      M
Sbjct: 343 VGVLSACAHAGLWNEGLR-YFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKM 401

Query: 124 D-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
             + D  +WNSLL  C  H     AV   EQ+ K E +  G   L+
Sbjct: 402 PMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLEPEESGNYVLL 447



 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           E K++HA I K+    + F+  +++ +      ++ A  +F  ++  ++ S+N+++    
Sbjct: 22  ELKKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYT 81

Query: 140 HHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSAC 173
           H+     A+ +F QM  T+   PD  TF  V+ +C
Sbjct: 82  HNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSC 116


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  + + +  ++ ++N ++WN +IAG    G  E+ L  ++ M+ AG   D  T 
Sbjct: 229 YMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITF 288

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   ++   +G+Q+HA + K G    V V + L+ MY+ CG +  + KVF   + 
Sbjct: 289 VSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECEN 348

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+V W+S++     HG   EA+ LF QM++ +++ +  TFL +L AC H G  +KG+++
Sbjct: 349 GDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKF 408

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM     ++ PR EHYT +V LLGR G + EAE+ I SM        +K LLSAC++H
Sbjct: 409 FDLMVEKYGVK-PRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIH 467

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
              E+A R ++ V  L P DP  YVLLSN+  +   WDD  D+R  M +R ++K+PG SW
Sbjct: 468 KKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISW 527

Query: 306 V 306
           +
Sbjct: 528 L 528



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 93/179 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R    +  + ++  +  RN  +WNA++AG       E+ L  FS M + G   D F +
Sbjct: 128 YFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFAL 187

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++     +     G+Q+H  + K G++ N+ V + L  MY  CG++ +  ++  +M  
Sbjct: 188 GSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPS 247

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++V+WN+L+ G A +GY  E +  +  M+    +PD  TF+ V+S+C     + +G Q
Sbjct: 248 QNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQ 306



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 31/124 (25%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN-------------------------- 114
           GKQ+H+LI   G  S+ F+ N L+ +Y+ CG ++                          
Sbjct: 71  GKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFR 130

Query: 115 -----DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV 169
                 A K+F  M ER++ +WN+++ G     ++ E + LF +M +    PD      V
Sbjct: 131 SGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSV 190

Query: 170 LSAC 173
           L  C
Sbjct: 191 LRGC 194



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC        V+      + + W+++IA +   G G +A+  F++M Q  ++ + 
Sbjct: 327 ISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEAND 386

Query: 63  FTITSIVGAIGVISGFKEG--KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
            T  S++ A     G KE   K    ++ K G    +     +V +    G++ +A  + 
Sbjct: 387 VTFLSLLYACSH-CGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALI 445

Query: 121 SSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            SM  + D+++W +LL  C  H  +  A ++ E++ +  + P      V+LS
Sbjct: 446 RSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFR--LDPRDPVPYVLLS 495


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 173/304 (56%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C +     N+++S+  +N +SWNAIIA    LG GE+ALK F +M+ AG  +D 
Sbjct: 491 ITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGNKLDR 550

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             +   + +   ++  +EG Q+H L  K G DS+ +V N  + MY  CG +N+  ++   
Sbjct: 551 VCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMNEMLQMVPD 610

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              R    WN+L+ G A +GY +EA + F+QM     KPD  TF+ +LSAC HAG +DKG
Sbjct: 611 QAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVALLSACSHAGLVDKG 670

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           + Y+  M +   + P   +H   IV LLGR G   EAE FI  M   P   ++++LLS+ 
Sbjct: 671 IDYYNSMASSFGVSPG-IKHCVCIVDLLGRLGRFAEAERFIEEMPVLPNDLIWRSLLSSS 729

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + H N EI  ++AK++L+L P D + YVLLSN+      W D   +R+ M    I K+P 
Sbjct: 730 RTHKNLEIGRKAAKKLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKTININKRPA 789

Query: 303 YSWV 306
            SW+
Sbjct: 790 CSWL 793



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 37/279 (13%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C+S  D + V+ S+ T + +S+N +I G+  L  G +A++ FS +R AGI  +Y
Sbjct: 389 ITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNY 448

Query: 63  FTITSIVGAIGVISGFKE-GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T+ +I G+    +     G+ +HA I + G+ S+ +V N L+ MYA CG +  +  +F+
Sbjct: 449 ITMINIHGSFTSSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFN 508

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           S+  +++VSWN+++   A  G+  EA++LF  MQ    K D       LS+C     +++
Sbjct: 509 SITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEE 568

Query: 182 GLQYFYL-------------------------------MRNDASLEPPRAEHYTAIVGLL 210
           G+Q   L                               M  D ++ P +   +  ++   
Sbjct: 569 GMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQQC--WNTLISGY 626

Query: 211 GRAGFLNEAESFIN---SMSRNPGPSVYKALLSACQVHG 246
            + G+  EAE       +M R P    + ALLSAC   G
Sbjct: 627 AKYGYFKEAEETFKQMVAMGRKPDYVTFVALLSACSHAG 665



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 106/218 (48%), Gaps = 8/218 (3%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +  RN +SW A++    + G  E+ L+ + +MR+ G+  +     ++V   G
Sbjct: 97  DARRLFWEMPERNVVSWTALMVALSSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCG 156

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +     G Q+ + +   G  + V V N L+ M+   G + DA K+F  M+E D +S N+
Sbjct: 157 SLENEVPGLQVASHVIVSGLQNQVSVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNA 216

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-MRN- 191
           ++   +H G   +   +F  M+   ++PD TT   ++S C  A     G     L +R+ 
Sbjct: 217 MISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSS 276

Query: 192 -DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
            D+S+         A+V +   AG L++AE    +MSR
Sbjct: 277 LDSSVTV-----INALVNMYSAAGKLSDAEFLFWNMSR 309



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 126/265 (47%), Gaps = 11/265 (4%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +   + IS NA+I+ + + G   +    FS+MR  G+  D  T+ S++    
Sbjct: 198 DAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCA 257

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
               F  G  +H+L  +   DS+V V N LV MY+  G ++DA  +F +M  RDL+SWN+
Sbjct: 258 SADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNT 317

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG-FIDKGLQYFYLMRND 192
           ++     +  S +A++   Q+  T   P+  TF   L AC   G  ID  + +  +++  
Sbjct: 318 MISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGKMVHAIVLQ-- 375

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV--HGNREI 250
            SL+        +++ + G+   + +AE    SM  +   S Y  L+    V   G + +
Sbjct: 376 LSLQRNLLVG-NSLITMYGKCNSMEDAEKVFQSMPTHDVVS-YNVLIGGYAVLEDGTKAM 433

Query: 251 AVRSAKRVLDLWPNDPAIYVLLSNV 275
            V S  R   + PN    Y+ + N+
Sbjct: 434 QVFSWIRSAGIKPN----YITMINI 454



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 84/162 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS      D + ++ ++  R+ ISWN +I+ +    +   ALK   ++       ++ T 
Sbjct: 291 YSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTF 350

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S +GA        +GK +HA++ ++    N+ V N L+ MY  C ++ DA KVF SM  
Sbjct: 351 SSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPT 410

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
            D+VS+N L+ G A      +A+Q+F  ++   IKP+  T +
Sbjct: 411 HDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMI 452



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 107/234 (45%), Gaps = 23/234 (9%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI---GVISGFKEG 81
           R   +W   ++G    G    A +    MR+ G+ +  F + S+V A    G   G   G
Sbjct: 4   RTPSTWYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRGRDEGIACG 63

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
             +HAL  + G   NV++   L+ +Y   G ++DA ++F  M ER++VSW +L++  + +
Sbjct: 64  AAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVALSSN 123

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY-----FYLMRNDASLE 196
           GY  E ++ + QM++  +  +   F  V+S C        GLQ         ++N  S+ 
Sbjct: 124 GYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVA 183

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSM------SRNPGPSVY--KALLSAC 242
                   +++ + G  G + +AE   + M      SRN   S+Y  + + S C
Sbjct: 184 -------NSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKC 230


>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 519

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/290 (38%), Positives = 182/290 (62%), Gaps = 2/290 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++     ++ +SWNA+IAG+   G  +QAL+ F+EM +AG+  D  T+ S++ A   +  
Sbjct: 227 LFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGD 286

Query: 78  FKEGKQMHALIFKIGYDS-NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            + GK++HA + +I     +  + N L+ MYA CG I ++  VF S+ ++D++SWNS+++
Sbjct: 287 LENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIV 346

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A HG+ +E++ LF+ MQ+T+I P+  TF+ VL AC HAG ID+G +YF LM ++  +E
Sbjct: 347 GMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIE 406

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
            P   H   +V +LGRAG L EA  FI+SM   P   +++ LL+AC+VHG+ E+A  + +
Sbjct: 407 -PNIRHCGCMVDMLGRAGLLKEAAKFIDSMKIEPNAIIWRTLLAACKVHGDVELAKVANE 465

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++  +  +    YVL+SN+  +   WD A  +R LM + G+ K  G S+V
Sbjct: 466 KLFSMRKDHSGDYVLMSNLYASRGEWDGAEKVRKLMDDSGVTKIRGSSFV 515



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 117/251 (46%), Gaps = 17/251 (6%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
             +++ +   +   +N +I G     +  +A+  ++EM +  +  D +T   ++ A   +
Sbjct: 62  HQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRL 121

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G  +H ++ ++G+ SN  V+N L+  +A CG +N A  +F    + D+V+W+SL+
Sbjct: 122 FWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLI 181

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A  G  + A +LF +M + ++     ++ V+++     G++ +G      M  D   
Sbjct: 182 AGYARRGDLKVARKLFNEMPERDL----VSWNVMIT-----GYVKQGEMESARMLFD--- 229

Query: 196 EPPRAE--HYTAIVGLLGRAGFLNEAESFINSMSRN---PGPSVYKALLSACQVHGNREI 250
           E P  +   + A++      G   +A    N M R    P      +LLSAC   G+ E 
Sbjct: 230 EAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLEN 289

Query: 251 AVRSAKRVLDL 261
             +   +V+++
Sbjct: 290 GKKVHAKVMEI 300



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 6/141 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +  +  +V+ S+  ++ ISWN++I G    G G+++L  F  M++  I  +  T 
Sbjct: 317 YAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITF 376

Query: 66  TSIVGAIGVISGFKEGKQMHALI---FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             ++ A        EG +   L+   +KI  + N+     +V M    G + +A K   S
Sbjct: 377 VGVLVACSHAGEIDEGYKYFDLMSSEYKI--EPNIRHCGCMVDMLGRAGLLKEAAKFIDS 434

Query: 123 MD-ERDLVSWNSLLLGCAHHG 142
           M  E + + W +LL  C  HG
Sbjct: 435 MKIEPNAIIWRTLLAACKVHG 455



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNV--------FVQNRLVFMYAICGAINDANKVF 120
           +G    +   K  KQ+HAL+   G+++NV         +   LV   A     N A+++F
Sbjct: 6   IGFKPTLPNLKTLKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLF 65

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           + + + D   +N ++ G +       A+ L+ +M +  +K D  TF  VL AC    +++
Sbjct: 66  AQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVN 125

Query: 181 KG 182
            G
Sbjct: 126 TG 127


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 176/305 (57%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC        ++  +  ++ ISWN+II+G C++   E+A     EM  +GI+ +Y
Sbjct: 453 ITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNY 512

Query: 63  FTITSIVGAIGVISGFKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            TI S++     ++  + GK+ H  +  +  +  ++ + N LV MYA  G + +A +VF 
Sbjct: 513 VTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFD 572

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + ERD +++ S++ G    G  + A++LFE+M   +IKPD  T + VLSAC H+G + +
Sbjct: 573 MLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQ 632

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G   F  MR+   L P   EH+  +  L GRAG LN+A+  I +M   P P+++  L+ A
Sbjct: 633 GQLLFEKMRSLYGLTP-HLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGA 691

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++H N EI   +A+++L++ P +P  YVL++N+  A  CW+    +R  M + G+RK P
Sbjct: 692 CRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRXFMRDLGVRKAP 751

Query: 302 GYSWV 306
           G +WV
Sbjct: 752 GCAWV 756



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 114/242 (47%), Gaps = 8/242 (3%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F ++++     N I WN I  G+   G+ + AL+  S+MR+ G  +D   +   +GA   
Sbjct: 364 FGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSH 423

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           I   K GK++H+   +  +     V+N L+ MY+ C  +  A  +F  M+ + L+SWNS+
Sbjct: 424 IGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSI 483

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + GC H   S EA  L  +M  + I+P+  T   VL  C     +  G ++   M     
Sbjct: 484 ISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRRED 543

Query: 195 LEPPRAEH---YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
            +    +H   + A+V +  R+G + EA    + +        Y ++++   + G  + A
Sbjct: 544 FK----DHLLLWNALVDMYARSGKVLEARRVFDMLGER-DKMTYTSMIAGYGMQGEGQAA 598

Query: 252 VR 253
           ++
Sbjct: 599 LK 600



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 95/222 (42%), Gaps = 9/222 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS  +  +D   +  +    +   WN +I+ +   G  ++AL  + +M + GI  D FT 
Sbjct: 219 YSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTY 278

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A G       GK++H  I       ++ V N L+ MY  CG +  A  +F  + E
Sbjct: 279 PSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPE 338

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSWNS++   A  G   EA +LF  M   +I+ +   +  +       G     L+ 
Sbjct: 339 RDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALEL 398

Query: 186 FYLMRNDASLEPPRAEHYTAIVGL-----LGRAGFLNEAESF 222
              MR   S      +    I+GL     +G A    E  SF
Sbjct: 399 LSQMRKXGS----HLDSVALIIGLGACSHIGDAKLGKEIHSF 436



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 4/171 (2%)

Query: 7   SRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR----QAGIDIDY 62
           + C++    Q  ++SV      S    +  F + G+   A K  S +R     A  D+  
Sbjct: 115 ASCNALESAQETFTSVDASMIDSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIV 174

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             I+S++ +   +    EG+Q+H  I  +G++ +  +  +LV  Y+    + DA+ +  +
Sbjct: 175 HPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITEN 234

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            +      WN L+     +G+ ++A+  ++QM K  I+PD  T+  VL AC
Sbjct: 235 SNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKAC 285


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 177/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +CD     Q V++ +R ++ +SW ++++G    G  +++L  F +M+   I+ D  T+
Sbjct: 56  YCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITL 115

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A        +GK +H LI K   + ++ ++  LV MYA CG+I+ A +VF  M  
Sbjct: 116 VGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRV 175

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++ +WN+++ G A HG+  +A+ LF+QM+  ++ PD  TF+ +L AC HAG +D+GL  
Sbjct: 176 RNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAM 235

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+N   +E PR EHY  +V LL RA  +++A +FI +M       ++  LL AC+  
Sbjct: 236 FQAMKNKFQIE-PRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSG 294

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ ++A +  +RV++L P+    YV+LSN+      WD A  +R  M N+GI K PG SW
Sbjct: 295 GHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSW 354

Query: 306 V 306
           +
Sbjct: 355 I 355



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 115/226 (50%), Gaps = 17/226 (7%)

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D  T+ S+V A   +   + GK +H+   ++G D N+ V N ++ MY  C  I  A +VF
Sbjct: 10  DEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEVF 69

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           + + E+D++SW S+L G A  GY +E++ LF +MQ  +I+PD  T + VLSAC   G +D
Sbjct: 70  NRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALD 129

Query: 181 KGLQYFYLMRN------DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
           +G +Y +L+ +      D  LE       TA+V +  + G ++ A      M R      
Sbjct: 130 QG-KYIHLLIDKFEINCDLVLE-------TALVDMYAKCGSIDLALQVFRRM-RVRNVFT 180

Query: 235 YKALLSACQVHGNRE--IAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
           + A++    +HG+ E  I++        L P+D     LL   S A
Sbjct: 181 WNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHA 226


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 178/305 (58%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           + +YS+  ++ +  +++  +  ++ +SW+A++  +   G  + A   F +M   G+  + 
Sbjct: 446 LASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNE 505

Query: 63  FTITSIVGAIGV-ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           FTI+S++ A     +G   G+Q HA+  K      + V + LV MYA  G+I  A  +F 
Sbjct: 506 FTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFE 565

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
              +RDLVSWNS+L G A HGYS++A+ +F QM+   I+ DG TFL V+  C HAG +++
Sbjct: 566 RQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEE 625

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G +YF  M  D  + P   EHY  +V L  RAG L+EA S I  MS   GP V++ LL A
Sbjct: 626 GQRYFDSMARDYGITPT-MEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGA 684

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+VH N E+   +A+++L L P D A YVLLSN+  A   W +  ++R LM  + ++K+ 
Sbjct: 685 CKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEA 744

Query: 302 GYSWV 306
           G SW+
Sbjct: 745 GCSWI 749



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 131/275 (47%), Gaps = 14/275 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +  S +D + V+ ++  RN ++W +++ G+   G+    ++ F  MR  G+  +  T 
Sbjct: 149 YMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTF 208

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++  +        G+++HA   K G  S VFV N L+ MYA CG + +A  VF  M+ 
Sbjct: 209 ASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMET 268

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWN+L+ G   +G+  EA+QLF   + +      +T+  V+  C +       ++ 
Sbjct: 269 RDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCAN-------IKQ 321

Query: 186 FYLMRNDASLEPPRAEH-----YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
             L R   S    R  H      TA++    +AG L  A      MS +     + A+++
Sbjct: 322 LGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMIN 381

Query: 241 ACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLS 273
            C  +G+  +A     R+ +  + PND     +L+
Sbjct: 382 GCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILT 416



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           ++N +SW A+I G    G    A   FS MR+ G+  + FT ++I+ A    S      Q
Sbjct: 370 SQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA----SVASLPPQ 425

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +HA + K  Y+    V   L+  Y+      +A  +F  +D++D+VSW+++L   A  G 
Sbjct: 426 IHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGD 485

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCH-AGFIDKGLQY 185
           S  A  +F +M    +KP+  T   V+ AC      +D G Q+
Sbjct: 486 SDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQF 528



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 2/144 (1%)

Query: 41  GSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYD-SNVF 98
           GS  QAL  F ++ R  G  +    +  ++   G +     GKQ+H L  + G+D  +V 
Sbjct: 81  GSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVG 140

Query: 99  VQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
           V   LV MY    ++ D  KVF +M +R++V+W SLL G    G   + ++LF +M+   
Sbjct: 141 VGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEG 200

Query: 159 IKPDGTTFLVVLSACCHAGFIDKG 182
           + P+  TF  VLS     G +D G
Sbjct: 201 VWPNSVTFASVLSVVASQGMVDLG 224


>gi|242096754|ref|XP_002438867.1| hypothetical protein SORBIDRAFT_10g027503 [Sorghum bicolor]
 gi|241917090|gb|EER90234.1| hypothetical protein SORBIDRAFT_10g027503 [Sorghum bicolor]
          Length = 610

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 107/294 (36%), Positives = 172/294 (58%), Gaps = 3/294 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C   +D Q V+  ++ RN +SW A++ G+C  G  E  L  F +M     D D++++
Sbjct: 291 YAKCGMMVDAQKVFDRMKVRNAVSWCALLGGYCQSGKHEMVLSLFRQMYTE--DDDWYSL 348

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ +   +S  K GK++H    ++    +V V++ LV +YA CGA+  A +VF     
Sbjct: 349 GTLLRSCAGLSAVKLGKEIHCRFMRMRGCGDVIVESALVDLYAKCGAVEYAYRVFRRSSV 408

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++++WN+++ GCA +G+   A+ LF++M + E+KPD  +F+ VL AC H G +++G  Y
Sbjct: 409 RNMITWNAMICGCAQNGHGERAISLFDEMVREEVKPDYVSFIGVLFACSHTGMVEEGRNY 468

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  + PP  EHY  IV LL R   L EAE  +N        S++ A+L AC  H
Sbjct: 469 FNSMSKDYGI-PPGIEHYNCIVDLLSRVELLEEAEDLVNKSQFRDDSSLWAAILGACATH 527

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
            N ++AVR AK++++L P     YVLL NV +    W+DA ++R LM +R I K
Sbjct: 528 TNPDVAVRVAKKMMELEPQYHLSYVLLENVYRTIGRWEDAVEVRRLMKSRKILK 581



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 115/254 (45%), Gaps = 18/254 (7%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFT 64
           Y    +  D +  +  +R  + I + ++I+ F      ++AL+ F  M    G+  D  T
Sbjct: 189 YGHSGAPGDARRAFEEMRAPDGICYTSLISAFVRNDWFDEALRWFQAMLATDGVYPDGCT 248

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++ A+G +   ++G++ HA +   G   NV V++  + MYA CG + DA KVF  M 
Sbjct: 249 FGSMMTALGNLKRARQGREAHAQVLTRGLCGNVIVESSTLDMYAKCGMMVDAQKVFDRMK 308

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            R+ VSW +LL G    G     + LF QM   +   D  +   +L +C     +  G +
Sbjct: 309 VRNAVSWCALLGGYCQSGKHEMVLSLFRQMYTED--DDWYSLGTLLRSCAGLSAVKLGKE 366

Query: 185 Y---FYLMR--NDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKAL 238
               F  MR   D  +E       +A+V L  + G +  A   F  S  RN     + A+
Sbjct: 367 IHCRFMRMRGCGDVIVE-------SALVDLYAKCGAVEYAYRVFRRSSVRN--MITWNAM 417

Query: 239 LSACQVHGNREIAV 252
           +  C  +G+ E A+
Sbjct: 418 ICGCAQNGHGERAI 431



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 7/161 (4%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID------YFTITSIVGAI 72
           +  +  R+ ++ ++++A F   G   +AL     M   G   D         +++   A 
Sbjct: 95  FDDLPRRDVVAHSSVLAAFLRAGLPRRALLQLRTMAAGGYGADDDVAPSAHALSASAKAC 154

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
            V+   + G  +H      GY  +  V + LV MY   GA  DA + F  M   D + + 
Sbjct: 155 AVLRDLRAGACVHGTTVVRGYADDGVVLSALVDMYGHSGAPGDARRAFEEMRAPDGICYT 214

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSA 172
           SL+     + +  EA++ F+ M  T+ + PDG TF  +++A
Sbjct: 215 SLISAFVRNDWFDEALRWFQAMLATDGVYPDGCTFGSMMTA 255


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 181/304 (59%), Gaps = 5/304 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSE--MRQAGIDIDYF 63
           Y++C       NV+  +  RN +SW+ +I G+  LG  +++L+ F    + +    ++ F
Sbjct: 166 YAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFKRFLVEEENEGVNDF 225

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T++S++   G  +  + G+ +H L FK  +DS+ FV + L+ +Y+ CG + +A  VF  +
Sbjct: 226 TLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEV 285

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKG 182
             R+L  WN++L+ CA H ++ +  +LF++M+    +K +  TFL VL AC HAG ++KG
Sbjct: 286 TVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKANFITFLCVLYACSHAGLVEKG 345

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF LM+ D  +EP   +HY+ +V LLGRAG LN+A   I  M   P  SV+ ALL+ C
Sbjct: 346 KYYFELMK-DYGIEPG-TQHYSTMVDLLGRAGKLNDAVKLIEEMPMEPTESVWGALLTGC 403

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN ++A   A RV +L      ++V+LSN   A   W++A   R +M +RGI+K+ G
Sbjct: 404 RLHGNTKLASYVADRVSELGSVSSGLHVMLSNAYAAAGRWEEAAKARKMMRDRGIKKETG 463

Query: 303 YSWV 306
            SWV
Sbjct: 464 LSWV 467



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 110/247 (44%), Gaps = 7/247 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+         ++     ++  +W+++I+ F        +L  F  M + G+  D    
Sbjct: 65  YSKTHLPYSSLQIFHDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIF 124

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S   + G++S     K +H    K  Y  ++FV + ++ MYA CG I  A+ VF  M  
Sbjct: 125 PSATKSCGILSSLPVAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPY 184

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV--VLSACCHAGFIDKGL 183
           R++VSW+ L+ G    G   E+++LF++    E       F +  VL  C  +  +  G 
Sbjct: 185 RNVVSWSGLIYGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMG- 243

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSAC 242
           +  + +    S +       ++++ L  + G + EA + F     RN G  ++ A+L AC
Sbjct: 244 RLIHGLSFKTSFDSS-CFVASSLISLYSKCGVVEEAYDVFEEVTVRNLG--MWNAMLIAC 300

Query: 243 QVHGNRE 249
             H + +
Sbjct: 301 AQHAHTD 307



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDID 61
           I  YS+C    +  +V+  V  RN   WNA++         ++  + F +M+   G+  +
Sbjct: 266 ISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKAN 325

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           + T   ++ A       ++GK    L+   G +      + +V +    G +NDA K+  
Sbjct: 326 FITFLCVLYACSHAGLVEKGKYYFELMKDYGIEPGTQHYSTMVDLLGRAGKLNDAVKLIE 385

Query: 122 SMDERDLVS-WNSLLLGCAHHGYSREA 147
            M      S W +LL GC  HG ++ A
Sbjct: 386 EMPMEPTESVWGALLTGCRLHGNTKLA 412


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 175/302 (57%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+        +  +  ++ ISWN+IIAG    G  ++ L  F  M +  +     + 
Sbjct: 272 YAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSF 331

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   ++    G+Q+H  I ++G+D N F+ + LV MYA CG I  A  VF  +D+
Sbjct: 332 SSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDK 391

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+V+W ++++GCA HG++ +AV LFE M +  ++P    F+ VL+AC HAG +D+G +Y
Sbjct: 392 RDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRY 451

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM-SRNPGPSVYKALLSACQV 244
           F  M  D  + P   EHY A+  LLGRAG L EA  FI++M    P  SV+  LL+AC+ 
Sbjct: 452 FNSMERDFGIAPG-LEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRA 510

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H + E+A +   ++L +   +   YVL+SN+  A   W DA  +R  M  +G++K P  S
Sbjct: 511 HKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACS 570

Query: 305 WV 306
           W+
Sbjct: 571 WI 572



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 2/179 (1%)

Query: 8   RCDSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTI 65
           R +S +D  + V+  +  R+ +SWN +IAGF   G   +AL    EM + G +  D FT+
Sbjct: 171 RGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTL 230

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+          +GK++H    + G+D +VF+ + L+ MYA C  +  + + F  +  
Sbjct: 231 SSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPR 290

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +D +SWNS++ GC  +G     +  F +M K  +KP   +F  V+ AC H   +  G Q
Sbjct: 291 KDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQ 349



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 17/180 (9%)

Query: 29  SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
           +W++II  + +      +   F+ MR   +  +     S++ A  ++   K    +HA  
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 89  FKIGYDSNVFVQNRLVFMYAI---CGAIND------------ANKVFSSMDERDLVSWNS 133
            ++G DS++++ N L+  YA     G + D              KVF  M  RD+VSWN+
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 134 LLLGCAHHGYSREAVQLFEQMQKT-EIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN 191
           ++ G A +G   EA+ +  +M K  ++KPD  T   +L        ++KG + + Y +RN
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN 256


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 176/305 (57%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           + +YS+  S+ D  +++  +  ++ ++W+A+++     G  E A   F++M   GI  + 
Sbjct: 442 LASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNE 501

Query: 63  FTITSIVGAIGVIS-GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           FTI+S++ A    S G  +G+Q HA+  K  Y   + V + LV MY+  G I+ A  VF 
Sbjct: 502 FTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFE 561

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
              +RDLVSWNS++ G A HGYS +A++ F QM+ + I+ DG TFL V+  C H G + +
Sbjct: 562 RQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVE 621

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G QYF  M  D  + P   EHY  +V L  RAG L+E  S I  M    G  V++ LL A
Sbjct: 622 GQQYFDSMVRDHKINPT-MEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGA 680

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+VH N E+   SA ++L L P+D + YVLLSN+  A   W +  ++R LM  R ++K+ 
Sbjct: 681 CRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEA 740

Query: 302 GYSWV 306
           G SW+
Sbjct: 741 GCSWI 745



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 128/267 (47%), Gaps = 14/267 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  +   V+  +  +N ++W +++ G  +     + +  F  MR  GI  + FT 
Sbjct: 145 YMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTF 204

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A+        G+++HA   K G  S+VFV N L+ MYA CG + DA  VF+ M+ 
Sbjct: 205 ASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMET 264

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWN+L+ G   +    EA+QLF + + T  K   +T+  V+  C +       L+ 
Sbjct: 265 RDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCAN-------LKQ 317

Query: 186 FYLMRNDASLEPPRAEH-----YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
             L R   S       H      TA+     + G L +A +  +  + +     + A++S
Sbjct: 318 LALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIIS 377

Query: 241 ACQVHGNREIAVRSAKRVLD--LWPND 265
            C  +G+  +AV    R+ +  + PN+
Sbjct: 378 GCIQNGDIPLAVVLFSRMREDRVMPNE 404



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 1/161 (0%)

Query: 23  RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGK 82
           R    +  N ++  +   G   + L  FS  R+ G+ +D  T++ ++ A   +     G+
Sbjct: 60  RRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGE 119

Query: 83  QMHALIFKIGYD-SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           Q+H L  K G+D   V     LV MY  CG++ +  +VF  M ++++V+W SLL GCAH 
Sbjct: 120 QLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHA 179

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
               E + LF +M+   I P+  TF  VLSA    G +D G
Sbjct: 180 QMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLG 220



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 8/183 (4%)

Query: 6   YSRCDSSLDFQNVYS-SVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS+C    D  N++S +  +RN +SW AII+G    G    A+  FS MR+  +  + FT
Sbjct: 347 YSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFT 406

Query: 65  ITSIVGA-IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            ++++ A + ++       Q+HA + K  Y     V   L+  Y+  G+  DA  +F  +
Sbjct: 407 YSAMLKASLSILP-----PQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMI 461

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-CHAGFIDKG 182
           +++D+V+W+++L   A  G    A  LF +M    IKP+  T   V+ AC C +  +D+G
Sbjct: 462 EQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQG 521

Query: 183 LQY 185
            Q+
Sbjct: 522 RQF 524


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 187/301 (62%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   V+ S++ ++ ++W++++AG+    + E+AL  +   ++  ++ + FT+
Sbjct: 199 YAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTL 258

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   ++   EGKQMHA+I K G+ SNVFV +  V MYA CG++ ++  +FS + E
Sbjct: 259 SSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQE 318

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++L  WN+++ G A H   +E + LFE+MQ+  + P+  TF  +LS C H G +++G ++
Sbjct: 319 KNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRF 378

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LMR    L  P   HY+ +V +LGRAG L+EA   I S+  +P  S++ +LL++C+V+
Sbjct: 379 FKLMRTTYGL-SPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVY 437

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+A  +A+++ +L P +   +VLLSN+  A   W++    R L+ +  ++K  G SW
Sbjct: 438 KNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSW 497

Query: 306 V 306
           +
Sbjct: 498 I 498



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 95/182 (52%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C      + V+  +  R+ +SWN +I  +       +AL  F EMR  G     
Sbjct: 95  INAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSE 154

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FTI+S++ A GV     E K++H L  K   D N++V   L+ +YA CG I DA +VF S
Sbjct: 155 FTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFES 214

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ++  V+W+S++ G   +    EA+ L+ + Q+  ++ +  T   V+ AC +   + +G
Sbjct: 215 MQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 274

Query: 183 LQ 184
            Q
Sbjct: 275 KQ 276



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           E K  H  I +I  + +V + N L+  Y+ CG +  A +VF  M ER LVSWN+++    
Sbjct: 71  EAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYT 130

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            +    EA+ +F +M+    K    T   VLSAC
Sbjct: 131 RNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 164


>gi|356504050|ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Glycine max]
          Length = 753

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 173/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S  +   ++ S    + +S   I+  F   G  E+A++ F  M + GI++D   +
Sbjct: 134 YSKCGSLEEAWEIFESAEELDDVSLTVILVAFMQNGLEEEAIQIFMRMVKLGIEVDPNMV 193

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++I+G  GV +    GKQ+H+LI K  +  N+FV N L+ MY+ CG + D+ +VF  M +
Sbjct: 194 SAILGVFGVGTSLTLGKQIHSLIIKKNFIQNLFVSNGLINMYSKCGDLYDSLQVFHEMTQ 253

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++ VSWNS++   A +G    A+Q ++ M+   I     TFL +L AC HAG ++KG+++
Sbjct: 254 KNSVSWNSVIAAYARYGDGFRALQFYDDMRVEGIALTDVTFLSLLHACSHAGLVEKGMEF 313

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M  D  L  PR+EHY  +V +LGRAG L EA+ FI  +  NPG  V++ALL AC +H
Sbjct: 314 LESMTRDHGLS-PRSEHYACVVDMLGRAGLLKEAKKFIEGLPENPGVLVWQALLGACSIH 372

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E+   +A ++    P+ PA YVL++N+  +   W +       M   G+ K+ G SW
Sbjct: 373 GDSEMGKYAANQLFLATPDSPAPYVLMANIYSSEGKWKERARSIKKMKEMGVAKEVGISW 432

Query: 306 V 306
           V
Sbjct: 433 V 433



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 89/162 (54%), Gaps = 3/162 (1%)

Query: 9   CDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           CD+    + V+  +  RN ++W A+I+G       E  L+ F +MR+  +  +  T  S 
Sbjct: 39  CDTG---RQVFDEMLERNVVTWTAVISGLAQNEFYEDGLRLFDQMRRGSVSPNSLTYLSA 95

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           + A   +    EG+++H L++K+G  S++ +++ L+ +Y+ CG++ +A ++F S +E D 
Sbjct: 96  LMACSGLQALLEGRKIHGLLWKLGMQSDLCIESALMDLYSKCGSLEEAWEIFESAEELDD 155

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           VS   +L+    +G   EA+Q+F +M K  I+ D      +L
Sbjct: 156 VSLTVILVAFMQNGLEEEAIQIFMRMVKLGIEVDPNMVSAIL 197



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 13/153 (8%)

Query: 114 NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +   +VF  M ER++V+W +++ G A + +  + ++LF+QM++  + P+  T+L  L AC
Sbjct: 40  DTGRQVFDEMLERNVVTWTAVISGLAQNEFYEDGLRLFDQMRRGSVSPNSLTYLSALMAC 99

Query: 174 CH-----AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
                   G    GL +   M++D  +E       +A++ L  + G L EA     S   
Sbjct: 100 SGLQALLEGRKIHGLLWKLGMQSDLCIE-------SALMDLYSKCGSLEEAWEIFESAEE 152

Query: 229 NPGPSVYKALLSACQVHGNREIAVRSAKRVLDL 261
               S+   L++  Q +G  E A++   R++ L
Sbjct: 153 LDDVSLTVILVAFMQ-NGLEEEAIQIFMRMVKL 184



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 5/112 (4%)

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
           MY+ CG + DA K+F  M  +D VSWN+++ G   +       Q+F++M +  +     T
Sbjct: 1   MYSKCGKLQDAIKLFDHMPVKDTVSWNAIISGFLRNRDCDTGRQVFDEMLERNV----VT 56

Query: 166 FLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLN 217
           +  V+S      F + GL+ F  MR   S+ P    + +A++   G    L 
Sbjct: 57  WTAVISGLAQNEFYEDGLRLFDQMRR-GSVSPNSLTYLSALMACSGLQALLE 107


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 117/301 (38%), Positives = 170/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    D +    ++ + N +S N  I+G    G  E AL+ F  MR AG++ +  T 
Sbjct: 111 YMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTF 170

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S V +   ++   +G+Q+HAL  K G D  V V   LV MY+ CG + D+ +V      
Sbjct: 171 VSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSG 230

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            DLV  ++++     HG+ ++AV LF+QM     +P+  TFL +L AC H+G  D+G+  
Sbjct: 231 TDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNC 290

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM     L+P   +HYT IV LLGR+G LNEAE  I SM   P   ++K LLSAC+  
Sbjct: 291 FELMTKTYGLQPS-VKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQ 349

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
              ++A R A+RV++L P+D A YVLLSN+   +  W+D   +R  M  + +RK+PG SW
Sbjct: 350 KKFDMAERIAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSW 409

Query: 306 V 306
           V
Sbjct: 410 V 410



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 123/260 (47%), Gaps = 7/260 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN  +WNA++AG  N G  E++L  F  MR+ G+  D + + S+      +
Sbjct: 20  RKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGL 79

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+HA + + G D ++ V + L  MY  CG + D      ++   ++VS N+ +
Sbjct: 80  RDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTI 139

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-MRNDAS 194
            G   +G +  A++ F  M+   ++ +  TF+  +++C     + +G Q   L ++    
Sbjct: 140 SGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVD 199

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
              P     T++V +  R G L ++E      S      +  A++SA   HG+ + AV  
Sbjct: 200 KVVPV---MTSLVHMYSRCGCLGDSERVCLEYS-GTDLVLCSAMISAYGFHGHGQKAVGL 255

Query: 255 AKRVL--DLWPNDPAIYVLL 272
            K+++     PN+     LL
Sbjct: 256 FKQMMAAGAEPNEVTFLTLL 275



 Score = 43.9 bits (102), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 16/133 (12%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
           N L+  Y   G +  A K+F  M  R++ +WN+++ G  + G + E++  F  M++  ++
Sbjct: 4   NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 63

Query: 161 PDGTTFLVVLSACCHAGFID--KGLQ-YFYLMRN----DASLEPPRAEHYTAIVGLLGRA 213
           PD    L  L  CC AG  D   G Q + Y++R+    D  +    A  Y        R 
Sbjct: 64  PD-EYGLGSLFRCC-AGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYM-------RC 114

Query: 214 GFLNEAESFINSM 226
           GFL + E+ + ++
Sbjct: 115 GFLRDGEAALRAL 127


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 187/301 (62%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   V+ S++ ++ ++W++++AG+    + E+AL  +   ++  ++ + FT+
Sbjct: 207 YAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTL 266

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   ++   EGKQMHA+I K G+ SNVFV +  V MYA CG++ ++  +FS + E
Sbjct: 267 SSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQE 326

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++L  WN+++ G A H   +E + LFE+MQ+  + P+  TF  +LS C H G +++G ++
Sbjct: 327 KNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRF 386

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LMR    L  P   HY+ +V +LGRAG L+EA   I S+  +P  S++ +LL++C+V+
Sbjct: 387 FKLMRTTYGL-SPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVY 445

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+A  +A+++ +L P +   +VLLSN+  A   W++    R L+ +  ++K  G SW
Sbjct: 446 KNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSW 505

Query: 306 V 306
           +
Sbjct: 506 I 506



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 95/182 (52%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C      + V+  +  R+ +SWN +I  +       +AL  F EMR  G     
Sbjct: 103 INAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSE 162

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FTI+S++ A GV     E K++H L  K   D N++V   L+ +YA CG I DA +VF S
Sbjct: 163 FTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFES 222

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ++  V+W+S++ G   +    EA+ L+ + Q+  ++ +  T   V+ AC +   + +G
Sbjct: 223 MQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 282

Query: 183 LQ 184
            Q
Sbjct: 283 KQ 284



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           E K  H  I +I  + +V + N L+  Y+ CG +  A +VF  M ER LVSWN+++    
Sbjct: 79  EAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYT 138

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            +    EA+ +F +M+    K    T   VLSAC
Sbjct: 139 RNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 172


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 177/306 (57%), Gaps = 3/306 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C   +  + ++ S++ +++++WNA+I G+   G  E+A+K F +MR +    D 
Sbjct: 270 IHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQ 329

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+  I+ A   I     GKQ+     + G+  +V+V   LV MYA CG++++A +VF  
Sbjct: 330 ITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYG 389

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFID 180
           M  ++ VSWN+++   A HG ++EA+ LF+ M  +   + P+  TF+ VLSAC HAG +D
Sbjct: 390 MPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVD 449

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +G + F++M +   L  P+ EHY+ +V L  RAG L EA  F+ +M   P   +  ALL 
Sbjct: 450 EGRRLFHMMSSSFGL-VPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLG 508

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           ACQ   N +I+ R  K +L+L P++   YV+ S +      WDD+  +R LM  +G+ K 
Sbjct: 509 ACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKT 568

Query: 301 PGYSWV 306
           PG SW+
Sbjct: 569 PGCSWI 574



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 143/277 (51%), Gaps = 11/277 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+RC    D + V+  +  ++ +SWN++I+G+  +    +A+  F EM +AG   + 
Sbjct: 169 ITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNE 228

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            ++ S++GA G +   K G  +   + +     N F+ + L+ MY  CG +  A ++F S
Sbjct: 229 MSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDS 288

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ++D V+WN+++ G A +G S EA++LF+ M+ +   PD  T + +LSAC   G +D G
Sbjct: 289 MKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLG 348

Query: 183 LQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
            Q    +   AS    + + Y  TA+V +  + G L+ A      M  N     + A++S
Sbjct: 349 KQ----VEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMP-NKNEVSWNAMIS 403

Query: 241 ACQVHGNREIAVRSAKRVLD----LWPNDPAIYVLLS 273
           A   HG  + A+   K +++    + PND     +LS
Sbjct: 404 ALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLS 440



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 117/237 (49%), Gaps = 6/237 (2%)

Query: 19  YSSVRTRNQISWNAIIAGFCNL-GSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +S++    + S+N +I G          AL+ +S M+  G+  +  T   +  A   +  
Sbjct: 83  FSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLA 142

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G+  H  + + G D +  V + L+ MYA CG + DA KVF  + ++DLVSWNS++ G
Sbjct: 143 VENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISG 202

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY-FYLMRNDASLE 196
            +   ++ EAV LF +M +   +P+  + + VL AC   G +  G     +++ N  +L 
Sbjct: 203 YSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLN 262

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
                  +A++ + G+ G L  A    +SM +    + + A+++    +G  E A++
Sbjct: 263 YFMG---SALIHMYGKCGDLVSARRIFDSMKKKDKVT-WNAMITGYAQNGMSEEAIK 315


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 179/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + V+S +  ++ ISW A+I G+   G+  ++++ F ++R++ I +D F +
Sbjct: 221 YVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFIL 280

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++G     +  ++GKQMHA   K+    ++ V N ++ MY  CG IN+A ++FS M  
Sbjct: 281 SSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPA 340

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+++SW  ++ G   HG  +EA++LF++MQ    +PD  T+L VL  C H+G ++KG +Y
Sbjct: 341 RNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEY 400

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  + +   ++  R EHY  +V LLGRAG L EA++ ++SM       +++ LLSAC+VH
Sbjct: 401 FSRLCSYHGIK-ARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVH 459

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E+       +L L   +P  YV++SN+      W +   IR L+ ++ ++K+ G SW
Sbjct: 460 GDLELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSW 519

Query: 306 V 306
           V
Sbjct: 520 V 520



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 131/255 (51%), Gaps = 15/255 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    +   ++  +  RN ISWNA+IAG+   G  E+AL  F +M++ G  +D FT 
Sbjct: 118 YSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTF 177

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIG--YDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           TS + A   +   KEG Q+HA +   G  Y  N  V   L+ +Y  CG +  A +VFS +
Sbjct: 178 TSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHI 237

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           +E+ ++SW +L+LG A  G   E+++LF Q++++ I+ DG     ++        + +G 
Sbjct: 238 EEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGK 297

Query: 184 QYFYLMRNDASLEPPRAEHYT---AIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKAL 238
           Q         +++ P     +   +I+ +  + G +NEAE   + M   P  +V  +  +
Sbjct: 298 QMHAF-----AIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEM---PARNVISWTVM 349

Query: 239 LSACQVHGNREIAVR 253
           ++    HG  + A+R
Sbjct: 350 ITGYGKHGLGKEAIR 364



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 102/182 (56%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y +C       +V+  +  RN +SW A++ G    G+  ++L  FS+M  +G+  + 
Sbjct: 14  IVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPND 73

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT ++ + A G+++G   G+Q+H +  K G+D    V N ++ MY+ CG IN+A  +F  
Sbjct: 74  FTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEV 133

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  R+L+SWN+++ G    G+  +A+ LF++MQ+     D  TF   L AC   G I +G
Sbjct: 134 MPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEG 193

Query: 183 LQ 184
            Q
Sbjct: 194 NQ 195



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%)

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
           +G+  ++ + N L+ MY  CG +  A  VF  M +R++VSW +L+ G   +G   E++ L
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           F +M  + +KP+  TF   L AC     +D G Q
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQ 94


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 176/305 (57%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           + +YS+  S+ D  +++  +  ++ ++W+A+++     G  E A   F++M   GI  + 
Sbjct: 442 LASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNE 501

Query: 63  FTITSIVGAIGVIS-GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           FTI+S++ A    S G  +G+Q HA+  K  Y   + V + LV MY+  G I+ A  VF 
Sbjct: 502 FTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFE 561

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
              +RDLVSWNS++ G A HGYS +A++ F QM+ + I+ DG TFL V+  C H G + +
Sbjct: 562 RQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVE 621

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G QYF  M  D  + P   EHY  +V L  RAG L+E  S I  M    G  V++ LL A
Sbjct: 622 GQQYFDSMVRDHKINPT-MEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGA 680

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+VH N E+   SA ++L L P+D + YVLLSN+  A   W +  ++R LM  R ++K+ 
Sbjct: 681 CRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEA 740

Query: 302 GYSWV 306
           G SW+
Sbjct: 741 GCSWI 745



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 128/267 (47%), Gaps = 14/267 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  +   V+  +  +N ++W +++ G  +     + +  F  MR  GI  + FT 
Sbjct: 145 YMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTF 204

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A+        G+++HA   K G  S+VFV N L+ MYA CG + DA  VF+ M+ 
Sbjct: 205 ASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMET 264

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWN+L+ G   +    EA+QLF + + T  K   +T+  V+  C +       L+ 
Sbjct: 265 RDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCAN-------LKQ 317

Query: 186 FYLMRNDASLEPPRAEH-----YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
             L R   S       H      TA+     + G L +A +  +  + +     + A++S
Sbjct: 318 LALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIIS 377

Query: 241 ACQVHGNREIAVRSAKRVLD--LWPND 265
            C  +G+  +AV    R+ +  + PN+
Sbjct: 378 GCIQNGDIPLAVVLFSRMREDRVMPNE 404



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 8/183 (4%)

Query: 6   YSRCDSSLDFQNVYS-SVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS+C    D  N++S +  +RN +SW AII+G    G    A+  FS MR+  +  + FT
Sbjct: 347 YSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFT 406

Query: 65  ITSIVGA-IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            ++++ A + ++       Q+HA + K  Y    FV   L+  Y+  G+  DA  +F  +
Sbjct: 407 YSAMLKASLSILP-----PQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMI 461

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-CHAGFIDKG 182
           +++D+V+W+++L   A  G    A  LF +M    IKP+  T   V+ AC C +  +D+G
Sbjct: 462 EQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQG 521

Query: 183 LQY 185
            Q+
Sbjct: 522 RQF 524



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 1/161 (0%)

Query: 23  RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGK 82
           R    +  N ++  +   G   + L  FS  R+ G+ +D  T++ ++ A   +     G+
Sbjct: 60  RRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGE 119

Query: 83  QMHALIFKIGYD-SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           Q+H L  K G+D   V     LV MY  CG++ +  +VF  M ++++V+W SLL GCAH 
Sbjct: 120 QLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHA 179

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
               E + LF +M+   I P+  TF  VLSA    G +D G
Sbjct: 180 QMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLG 220


>gi|296088921|emb|CBI38481.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 105/289 (36%), Positives = 169/289 (58%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  ++ ISWNA+IAG+   G  E+ L  + EMRQ+G+  D +T  S+  A   ++ 
Sbjct: 148 LFDDLSKKSLISWNAMIAGYVQKGLEEEGLNLYDEMRQSGLTPDQYTFASVFRACATLAT 207

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            ++GKQ H ++ K     NV V + L+ MY  C ++ D ++VF+    R++++W +L+ G
Sbjct: 208 LEKGKQAHCVMIKSQIKENVVVNSALMDMYFKCSSLYDGHRVFNKSLNRNVITWTALISG 267

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
              HG   E +  F +M+    +P+  TFL V+SAC H G +++G +YF  M  D  ++ 
Sbjct: 268 YGQHGRVAEVLVFFSKMKTEGFRPNYVTFLAVISACSHGGLVNEGWEYFMSMTRDYGIQ- 326

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           PR +HY A+V LLGRAG L+EA  F+ +        ++ ALL AC+VHGN ++   +AK+
Sbjct: 327 PRGQHYAAMVDLLGRAGRLHEAFEFVQNSPCGEHSVIWGALLGACRVHGNIDMLRFAAKK 386

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             DL P +   YV+LSN       WD+  ++R +M   G+RK PGYS +
Sbjct: 387 YFDLEPENAGKYVVLSNAYATFGLWDNVAEVRGVMRESGMRKDPGYSRI 435



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 86/165 (52%), Gaps = 3/165 (1%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN    +  + G C  G   + ++    + + G+ ++  T   ++        FK G+++
Sbjct: 57  RNSFHLDETLKGLCFSG---RVMEAVGLLCRTGLQVEPATYALLLQECIFKKEFKTGRRI 113

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA +  +GY  + +++ +L+ ++A  G ++ ++ +F  + ++ L+SWN+++ G    G  
Sbjct: 114 HAQMIVVGYYPDEYLKTKLLILHAKTGDLDTSHILFDDLSKKSLISWNAMIAGYVQKGLE 173

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
            E + L+++M+++ + PD  TF  V  AC     ++KG Q   +M
Sbjct: 174 EEGLNLYDEMRQSGLTPDQYTFASVFRACATLATLEKGKQAHCVM 218



 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 15/201 (7%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D   V++    RN I+W A+I+G+   G   + L  FS+M+  G   +Y T 
Sbjct: 237 YFKCSSLYDGHRVFNKSLNRNVITWTALISGYGQHGRVAEVLVFFSKMKTEGFRPNYVTF 296

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD- 124
            +++ A        EG +     + +    +  +Q R     A+   +  A ++  + + 
Sbjct: 297 LAVISACSHGGLVNEGWE-----YFMSMTRDYGIQPRGQHYAAMVDLLGRAGRLHEAFEF 351

Query: 125 ------ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS-ACCHAG 177
                     V W +LL  C  HG     +  F   +  +++P+     VVLS A    G
Sbjct: 352 VQNSPCGEHSVIWGALLGACRVHG--NIDMLRFAAKKYFDLEPENAGKYVVLSNAYATFG 409

Query: 178 FIDKGLQYFYLMRNDASLEPP 198
             D   +   +MR     + P
Sbjct: 410 LWDNVAEVRGVMRESGMRKDP 430


>gi|359481497|ref|XP_002273989.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37320-like [Vitis vinifera]
          Length = 510

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 170/301 (56%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        V+  +  +N +SW AIIAGF      +  L+ +S MR + +  +  T 
Sbjct: 158 YSKCGELCHAYRVFEEMPVKNVVSWTAIIAGFAQEWLVDGCLELYSRMRNSTLKPNDLTF 217

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T ++           G+  H    ++G+DS V V N L+ MY  CG + DA  +F  MD 
Sbjct: 218 TCLLSTCTGGGSLGRGRSAHCQTIEMGFDSYVHVANALISMYCKCGNVEDAYYIFERMDG 277

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+VSWNS++ G A HG + +A+ LFE+M+K ++KPD  TFL VLS+C H G + +G  Y
Sbjct: 278 KDIVSWNSMIAGHAQHGLAVQAIDLFEEMKKQKLKPDAITFLGVLSSCRHVGLVKQGQFY 337

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M        P  +H+  +V LLGRAG L EA  FI  M  +P   ++ +LLS+C++H
Sbjct: 338 FNSMVEHGV--KPELDHFACVVDLLGRAGLLEEARDFIVKMPIHPNAIIWGSLLSSCRLH 395

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+  + + +A+  L L P   A ++ L+++  +  CWD A  +R LM  +G++ +PG SW
Sbjct: 396 GSVWLGIEAAENRLLLEPECAATHLQLASLYASVGCWDQAARVRKLMKGKGLKTEPGCSW 455

Query: 306 V 306
           +
Sbjct: 456 I 456



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 54/96 (56%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K G Q H L  + G+  NV+V + L+  Y+ CG +  A +VF  M  +++VSW +++ G
Sbjct: 129 LKSGVQFHCLAIRTGFVGNVYVGSCLISFYSKCGELCHAYRVFEEMPVKNVVSWTAIIAG 188

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            A        ++L+ +M+ + +KP+  TF  +LS C
Sbjct: 189 FAQEWLVDGCLELYSRMRNSTLKPNDLTFTCLLSTC 224



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 81/198 (40%), Gaps = 4/198 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C +  D   ++  +  ++ +SWN++IAG    G   QA+  F EM++  +  D 
Sbjct: 256 ISMYCKCGNVEDAYYIFERMDGKDIVSWNSMIAGHAQHGLAVQAIDLFEEMKKQKLKPDA 315

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   ++ +   +   K+G+     + + G    +     +V +    G + +A      
Sbjct: 316 ITFLGVLSSCRHVGLVKQGQFYFNSMVEHGVKPELDHFACVVDLLGRAGLLEEARDFIVK 375

Query: 123 MD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD-GTTFLVVLSACCHAGFID 180
           M    + + W SLL  C  HG     ++  E   +  ++P+   T L + S     G  D
Sbjct: 376 MPIHPNAIIWGSLLSSCRLHGSVWLGIEAAE--NRLLLEPECAATHLQLASLYASVGCWD 433

Query: 181 KGLQYFYLMRNDASLEPP 198
           +  +   LM+       P
Sbjct: 434 QAARVRKLMKGKGLKTEP 451


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 174/301 (57%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D  +V+S ++ ++ ISWN +I G+       +AL  F+EM++     D  T+
Sbjct: 499 YAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTV 557

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             I+ A   ++   +G+++H    + GY  + +V N +V MY  CG +  A  +F  +  
Sbjct: 558 ACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPN 617

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +DLVSW  ++ G   HGY  EA+  F QM+ T I+PD  +F+ +L AC H+G +D+G + 
Sbjct: 618 KDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKI 677

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M+ +  +E P  EHY  +V LL R G L +A  FI +M   P  +++ ALL  C++H
Sbjct: 678 FNIMKKECQIE-PNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIH 736

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + ++A + A+R+ +L P +   YVLL+N+    + W++   +R  +  RG++K PG SW
Sbjct: 737 HDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSW 796

Query: 306 V 306
           +
Sbjct: 797 I 797



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 140/270 (51%), Gaps = 8/270 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        V+  +  +  +SW ++I G+   G  + A+K F EM+  G+  D + +
Sbjct: 398 YSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAV 457

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI+ A  +    K GK +H  I +   ++N FV N L  MYA CG++ DA+ VFS M +
Sbjct: 458 TSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKK 517

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D++SWN+++ G   +    EA+ LF +MQ+ E KPDGTT   +L AC     +DKG + 
Sbjct: 518 KDVISWNTMIGGYTKNSLPNEALTLFAEMQR-ESKPDGTTVACILPACASLAALDKGREI 576

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + Y +RN  S +        A+V +  + G L  A S  + M  N     +  +++   +
Sbjct: 577 HGYALRNGYSEDKYVT---NAVVDMYVKCGLLVLARSLFD-MIPNKDLVSWTVMIAGYGM 632

Query: 245 H--GNREIAVRSAKRVLDLWPNDPAIYVLL 272
           H  G+  I   +  R+  + P++ +   +L
Sbjct: 633 HGYGSEAINTFNQMRMTGIEPDEVSFISIL 662



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 109/216 (50%), Gaps = 5/216 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++  +  R+ ISWN++I+G+   G  ++ ++ F +M   G+DID  T+ ++  A   I
Sbjct: 306 QKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANI 365

Query: 76  SGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
                GK +H+   K    D  V   N L+ MY+ CG +N A +VF  MDE+ +VSW S+
Sbjct: 366 GTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSM 425

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQYFYLMRNDA 193
           + G    G S  A++LF++M+   + PD      +L+AC   G +  G + + Y+  N+ 
Sbjct: 426 ITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNL 485

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
                 +    A+  +  + G + +A    + M + 
Sbjct: 486 ETNSFVS---NALTDMYAKCGSMKDAHDVFSHMKKK 518



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 144/321 (44%), Gaps = 40/321 (12%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C    + + V+  +       WN +I+ +   G+  +++  F +M + GI  + 
Sbjct: 192 VFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNS 251

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T +SI+     ++  +EG+Q+H LI K+G++S   V N L+  Y +   +  A K+F  
Sbjct: 252 YTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDE 311

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG--FID 180
           + +RD++SWNS++ G   +G     +++F +M    +  D  T + V  AC + G   + 
Sbjct: 312 LTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLG 371

Query: 181 KGLQYFYL----------------------------MRNDASLEPPRAEHYTAIVGLLGR 212
           K L  + +                            +R    ++      +T+++    R
Sbjct: 372 KVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVR 431

Query: 213 AGFLNEAESFINSM-SRNPGPSVY--KALLSACQVHGNREIAVRSAKRVLD-LWPNDPAI 268
            G  + A    + M SR   P VY   ++L+AC ++GN    ++S K V D +  N+   
Sbjct: 432 EGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGN----LKSGKIVHDYIRENNLET 487

Query: 269 YVLLSNVSKATDCWDDAGDIR 289
              +SN    TD +   G ++
Sbjct: 488 NSFVSNA--LTDMYAKCGSMK 506



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 2/156 (1%)

Query: 34  IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY 93
           I  FC +G  + A++     + +  D+  +   SI+         ++G+++ ++I   G 
Sbjct: 124 IVEFCEVGDLKNAMELLCSSQNSNFDLGAYC--SILQLCAERKSIRDGRRVRSIIESSGV 181

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
             +  +  +LVFMY  CG + +   VF  + E  +  WN ++   +  G   E++ LF+Q
Sbjct: 182 MIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQ 241

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           M +  IKP+  TF  +L        +++G Q   L+
Sbjct: 242 MLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLI 277


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 177/301 (58%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D  +V+S ++ ++ +SWN +I G+       +AL  F EM Q     +  T+
Sbjct: 397 YAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSITM 455

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             I+ A   ++  + G+++H  I + G+  +  V N LV MY  CGA+  A  +F  + E
Sbjct: 456 ACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPE 515

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +DLVSW  ++ G   HGY  EA+  F +M+ + I+PD  +F+ +L AC H+G +D+G  +
Sbjct: 516 KDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGF 575

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +MRN+  +E P++EHY  IV LL RAG L++A  FI  M   P  +++ ALL  C+++
Sbjct: 576 FNMMRNNCCIE-PKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIY 634

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + ++A + A+ V +L P +   YVLL+N+    + W++   +R  +  RG+RK PG SW
Sbjct: 635 HDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSW 694

Query: 306 V 306
           +
Sbjct: 695 I 695



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 107/180 (59%), Gaps = 2/180 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+ ++  R+ +SW ++IAG+   G  + +++ F EM + GI  D FTIT+I+ A      
Sbjct: 308 VFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGL 367

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + GK +H  I +    S++FV N L+ MYA CG++ DA+ VFS M  +D+VSWN+++ G
Sbjct: 368 LENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGG 427

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLE 196
            + +    EA+ LF +MQ    KP+  T   +L AC     +++G + + +++RN  SL+
Sbjct: 428 YSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLD 486



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 90/167 (53%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R+ ISWN++I+G+ + G  E+ L  F +M   GI+ D  T+ S+V      
Sbjct: 205 RKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNT 264

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+ +H    K  +   + + N L+ MY+  G +N A +VF +M ER +VSW S++
Sbjct: 265 GMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMI 324

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            G A  G S  +V+LF +M+K  I PD  T   +L AC   G ++ G
Sbjct: 325 AGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENG 371



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 72/131 (54%), Gaps = 2/131 (1%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           +N  I  FC LG+  +A++  ++  +   D++  T  S++     +   ++G+++H++I 
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKP--DLELRTYCSVLQLCADLKSIQDGRRIHSIIQ 128

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
               + +  + ++LVFMY  CG + +  ++F  +    +  WN L+ G A  G  RE++ 
Sbjct: 129 SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLS 188

Query: 150 LFEQMQKTEIK 160
           LF++M++  I+
Sbjct: 189 LFKRMRELGIR 199


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 176/302 (58%), Gaps = 1/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     + + V+  +  R+ +S  AII+G+  LG  E+AL+ F  +++ G+  +Y T 
Sbjct: 156 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTY 215

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A+  ++    GKQ+H+ + +      V +QN L+ MY+ CG +N A K+F++M  
Sbjct: 216 ASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPV 275

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           R ++SWN++L+G + HG   E V+LF+ M ++ ++KPD  TFL VLS C H G  DKGL+
Sbjct: 276 RTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLE 335

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M N         EHY  ++ LLGRAG + EA   I  M   P  +++ +LL AC+V
Sbjct: 336 MFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRV 395

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N  I      R+L++ P +   YV+LSN+  +   W+D  ++R LM  + + K+PG S
Sbjct: 396 HSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRS 455

Query: 305 WV 306
           W+
Sbjct: 456 WI 457



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 137/248 (55%), Gaps = 9/248 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y++C+     ++V+  +R RN +SW A+I+G+   G   +AL  F +M ++  + + 
Sbjct: 52  IILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNE 111

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  +++ +    SGF+ G+Q+H+ IFK  Y++++FV + L+ MYA  G I++A  VF  
Sbjct: 112 FTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFEC 171

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ERD+VS  +++ G A  G   EA++LF ++Q+  +  +  T+  +L+A      +D G
Sbjct: 172 LPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHG 231

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALL 239
            Q + +++R +    P       +++ +  + G LN A    N+M   P  +V  + A+L
Sbjct: 232 KQVHSHVLRCEL---PFYVVLQNSLIDMYSKCGNLNYARKIFNNM---PVRTVISWNAML 285

Query: 240 SACQVHGN 247
                HG 
Sbjct: 286 VGYSKHGK 293



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 60/95 (63%)

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           +EG+++HA + K  Y   V++  RL+ +Y  C  +  A  VF  M ER++VSW +++ G 
Sbjct: 27  REGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGY 86

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +  G++ EA+ LF QM +++ +P+  TF  VLS+C
Sbjct: 87  SQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSC 121


>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 484

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 110/291 (37%), Positives = 171/291 (58%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +   +++SW A+I G    G  ++A+ CF  M + G++ DY T+ + + A   +
Sbjct: 157 REVFDEMPAPDKVSWTALIDGCVKNGRHDEAIDCFHSMLRDGVEPDYVTLVAAISACAEV 216

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G  +H  +     + NV V N L+ MYA CG ++ A +VF  + +R +VSWNS++
Sbjct: 217 GALGLGMWVHRFVVDKRLEHNVRVANSLIDMYARCGQVDFARQVFGRIRKRTVVSWNSMI 276

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           +G A +G   +AV+ FE M++   KPD  TF  VL+AC HAG  D+GL+Y+  MR +  +
Sbjct: 277 VGFAANGQYADAVEHFEAMRREGFKPDTVTFTGVLTACSHAGLTDEGLRYYDAMRTEHGI 336

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
              R EHY  +V LLGRAG L EA   + SM   P   V  ALL+ C++HG+ ++A +  
Sbjct: 337 A-ARMEHYGCVVDLLGRAGRLGEAMRVVESMPMRPNEVVLGALLAGCRMHGDVDLAEQLM 395

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +L+  P   + YVLLSN+  A   W  AG +R+LM +RG++K+PG S V
Sbjct: 396 QHLLEQDPGGDSNYVLLSNIYAAVGKWGGAGKVRSLMKSRGVKKRPGQSTV 446



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 6/169 (3%)

Query: 6   YSRCDSSLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y+RC   +DF + V+  +R R  +SWN++I GF   G    A++ F  MR+ G   D  T
Sbjct: 248 YARC-GQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPDTVT 306

Query: 65  ITSIVGAIGVISGFKEGKQMH-ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            T ++ A        EG + + A+  + G  + +     +V +    G + +A +V  SM
Sbjct: 307 FTGVLTACSHAGLTDEGLRYYDAMRTEHGIAARMEHYGCVVDLLGRAGRLGEAMRVVESM 366

Query: 124 DER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             R + V   +LL GC  HG    A QL + +   E  P G +  V+LS
Sbjct: 367 PMRPNEVVLGALLAGCRMHGDVDLAEQLMQHL--LEQDPGGDSNYVLLS 413



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +F    D +V   N ++      G +  A +VF  M   D VSW +L+ GC  +G   EA
Sbjct: 128 LFDSMPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRHDEA 187

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           +  F  M +  ++PD  T +  +SAC   G +  G+
Sbjct: 188 IDCFHSMLRDGVEPDYVTLVAAISACAEVGALGLGM 223


>gi|449441630|ref|XP_004138585.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Cucumis sativus]
          Length = 600

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 175/304 (57%), Gaps = 7/304 (2%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++ D+  D + V+  + TRN +SW  +I G+     G++A+K F  M +     D  T
Sbjct: 253 VYTKNDNLYDARKVFDEMPTRNSVSWTTMIVGYGQHEYGKEAVKLFRRMFRKDYCPDELT 312

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++ + G  SG  E  Q+H+ + K+G+++ + + N L++ Y+ CG I  A + F  + 
Sbjct: 313 FASVLSSCGFTSGASELMQVHSCLIKLGFEAFLSINNGLIYAYSKCGIIAAALQCFRLIA 372

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E DLV+W S++ G A  G  ++AV+LF++M    I+PD   FL VLSAC H GF+  GL 
Sbjct: 373 EPDLVTWTSIICGLALCGLEKDAVKLFDKMLSYGIRPDKIAFLGVLSACSHGGFVSMGLH 432

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF LM N   L P  +EH T ++ LLGRAG L++A   + SM +  GP   +A + AC+ 
Sbjct: 433 YFNLMTNQYQLVPD-SEHLTCLIDLLGRAGSLDQAFDLLKSMPKEAGPDALRAFIRACRT 491

Query: 245 HGNREIAVRSAKRVLDLW--PNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           HGN    +R AKR ++    P++P  Y L+SN+  +   W D   +R L+ +R  +K PG
Sbjct: 492 HGN----LRLAKRAMEFASEPDEPVNYSLVSNMYASEGRWSDVARMRKLINDRCEQKTPG 547

Query: 303 YSWV 306
            SWV
Sbjct: 548 LSWV 551



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 33/273 (12%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D +  +S +  R+ + WN ++          +A++ F  M+  G   D FT 
Sbjct: 153 YAKCGLYEDARLAFSCILYRDLVLWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGDDFTF 212

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ +       + GKQ+H L+ K  +D ++ V + LV +Y     + DA KVF  M  
Sbjct: 213 SSLLSSCKYKGSGELGKQLHCLLIKQSFDLDILVASSLVNVYTKNDNLYDARKVFDEMPT 272

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----------C 174
           R+ VSW ++++G   H Y +EAV+LF +M + +  PD  TF  VLS+C            
Sbjct: 273 RNSVSWTTMIVGYGQHEYGKEAVKLFRRMFRKDYCPDELTFASVLSSCGFTSGASELMQV 332

Query: 175 HAGFIDKGLQYFYLMRND------------ASLE------PPRAEHYTAIVGLLGRAGFL 216
           H+  I  G + F  + N             A+L+       P    +T+I+  L   G  
Sbjct: 333 HSCLIKLGFEAFLSINNGLIYAYSKCGIIAAALQCFRLIAEPDLVTWTSIICGLALCGLE 392

Query: 217 NEAESFINSMSR---NPGPSVYKALLSACQVHG 246
            +A    + M      P    +  +LSAC  HG
Sbjct: 393 KDAVKLFDKMLSYGIRPDKIAFLGVLSACS-HG 424



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 18/185 (9%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y +C      +N++  +  RN +S    +AG               EM    +D D  T
Sbjct: 69  VYVKCRDLDSARNLFDEMARRNVLS----MAGM--------------EMLMGLVDPDGIT 110

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
              +  +  V++  + G+Q+H+ + KIG+D + FV + +V  YA CG   DA   FS + 
Sbjct: 111 FNGLFRSCVVLNDVESGRQLHSFVMKIGFDLDCFVGSAVVDFYAKCGLYEDARLAFSCIL 170

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RDLV WN +L  C  +  SREA+++F  MQ    K D  TF  +LS+C + G  + G Q
Sbjct: 171 YRDLVLWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGDDFTFSSLLSSCKYKGSGELGKQ 230

Query: 185 YFYLM 189
              L+
Sbjct: 231 LHCLL 235


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 105/290 (36%), Positives = 178/290 (61%), Gaps = 2/290 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ S++ R+ ++W A+I G+   G    AL  F  M + G   + +T+ +++  I  ++ 
Sbjct: 368 IFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLAS 427

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-DERDLVSWNSLLL 136
              GKQ+HA+  ++   S+V V N L+ MY+  G+I DA K+F+ +   RD ++W S++L
Sbjct: 428 LDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMIL 487

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
             A HG   EA++LFE+M +  +KPD  T++ VLSAC H G +++G  YF LM+N  ++E
Sbjct: 488 SLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIE 547

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
           P  + HY  ++ LLGRAG L EA +FI +M   P    + +LLS+C+VH   ++A  +A+
Sbjct: 548 PT-SSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAE 606

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++L + PN+   Y+ L+N   A   W+DA  +R  M ++ ++K+ G+SWV
Sbjct: 607 KLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWV 656



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 4/184 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +   + +SW  +I G+ +LG  + A+  F  M  +GI    FT T+++ +    
Sbjct: 99  RRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAA 158

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                GK++H+ + K+G    V V N L+ MYA CG    A  VF  M  +D  +WN+++
Sbjct: 159 QALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMI 218

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
                      A+ LF+QM      PD  ++  +++  CH G+  + L+ F  M   +SL
Sbjct: 219 SMHMQFCQFDLALALFDQMT----DPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSL 274

Query: 196 EPPR 199
           +P +
Sbjct: 275 KPDK 278



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 120/274 (43%), Gaps = 40/274 (14%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVISGFKEGKQMHA 86
           +SWN+II G+C+ G   +AL+ FS M + + +  D FT+ S++ A       K GKQ+HA
Sbjct: 243 VSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHA 302

Query: 87  LIFKIGYDSNVFVQNRLVFMYAICGA---------------------------------I 113
            I +   D    V N L+ MYA  GA                                 I
Sbjct: 303 HIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDI 362

Query: 114 NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           + A  +F S+  RD+V+W ++++G A +G   +A+ LF  M +   KP+  T   VLS  
Sbjct: 363 DPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVI 422

Query: 174 CHAGFIDKGLQYFYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGP 232
                +D G Q   + +R +   E        A++ +  R+G + +A    N +      
Sbjct: 423 SSLASLDHGKQLHAVAIRLE---EVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDT 479

Query: 233 SVYKALLSACQVH--GNREIAVRSAKRVLDLWPN 264
             + +++ +   H  GN  I +      ++L P+
Sbjct: 480 LTWTSMILSLAQHGLGNEAIELFEKMLRINLKPD 513



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 46/87 (52%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
             F  N ++  +A  G ++ A +VF  + + D VSW ++++G  H G  + AV  F +M 
Sbjct: 78  TTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMV 137

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKG 182
            + I P   TF  VL++C  A  +D G
Sbjct: 138 SSGISPTQFTFTNVLASCAAAQALDVG 164


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 117/301 (38%), Positives = 170/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    D +    ++ + N +S N  I+G    G  E AL+ F  MR AG++ +  T 
Sbjct: 219 YMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTF 278

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S V +   ++   +G+Q+HAL  K G D  V V   LV MY+ CG + D+ +V      
Sbjct: 279 VSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSG 338

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            DLV  ++++     HG+ ++AV LF+QM     +P+  TFL +L AC H+G  D+G+  
Sbjct: 339 TDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNC 398

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM     L+P   +HYT IV LLGR+G LNEAE  I SM   P   ++K LLSAC+  
Sbjct: 399 FELMTKTYGLQPS-VKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQ 457

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
              ++A R A+RV++L P+D A YVLLSN+   +  W+D   +R  M  + +RK+PG SW
Sbjct: 458 KKFDMAERIAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSW 517

Query: 306 V 306
           V
Sbjct: 518 V 518



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 123/260 (47%), Gaps = 7/260 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN  +WNA++AG  N G  E++L  F  MR+ G+  D + + S+      +
Sbjct: 128 RKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGL 187

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+HA + + G D ++ V + L  MY  CG + D      ++   ++VS N+ +
Sbjct: 188 RDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTI 247

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-MRNDAS 194
            G   +G +  A++ F  M+   ++ +  TF+  +++C     + +G Q   L ++    
Sbjct: 248 SGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVD 307

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
              P     T++V +  R G L ++E      S      +  A++SA   HG+ + AV  
Sbjct: 308 KVVPV---MTSLVHMYSRCGCLGDSERVCLEYS-GTDLVLCSAMISAYGFHGHGQKAVGL 363

Query: 255 AKRVL--DLWPNDPAIYVLL 272
            K+++     PN+     LL
Sbjct: 364 FKQMMAAGAEPNEVTFLTLL 383



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 12/169 (7%)

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D FT   ++ A   +  F   + +   I K     NV   N L+  Y   G +  A K+F
Sbjct: 76  DRFTANHLLLAYADLGDFPTARGLFERIPK----RNVMSWNILIGGYVKNGDLETARKLF 131

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M  R++ +WN+++ G  + G + E++  F  M++  ++PD    L  L  CC AG  D
Sbjct: 132 DEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD-EYGLGSLFRCC-AGLRD 189

Query: 181 --KGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
              G Q + Y++R+    +       +++  +  R GFL + E+ + ++
Sbjct: 190 VVSGRQVHAYVVRSGLDRDMCVG---SSLAHMYMRCGFLRDGEAALRAL 235



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 5/116 (4%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           +Q+HA     G  ++ F  N L+  YA  G    A  +F  + +R+++SWN L+ G   +
Sbjct: 62  RQLHAFAATSGAAADRFTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKN 121

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
           G    A +LF++M    +     T+  +++   ++G  ++ L +F+ MR +  ++P
Sbjct: 122 GDLETARKLFDEMPARNV----ATWNAMVAGLTNSGLNEESLGFFFAMRREG-MQP 172


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 103/289 (35%), Positives = 171/289 (59%), Gaps = 1/289 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  +N ++W+ +I+G+      ++A++ +  ++  G+  +   + S++ +   +
Sbjct: 199 RKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHL 258

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G++ H  I +     N+ +   LV MYA CG+I+ A  VF  +  RD +SW +L+
Sbjct: 259 GALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLI 318

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HGY+ +A++ F +M+K  + P   TF  VLSAC H G +++GL+ F  M+ D  +
Sbjct: 319 AGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRI 378

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           E PR EHY  +V LLGRAG L EAE F+N M   P   ++ ALL AC++H N EIA R+ 
Sbjct: 379 E-PRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAG 437

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           K +++L P     YVLLSN+   T+ W++  +IR +M  RG+ K PGY+
Sbjct: 438 KTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYT 486



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 135/301 (44%), Gaps = 43/301 (14%)

Query: 13  LDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA 71
           LD+   V+  ++  N   +N+ I GF      +++   + + ++ G+  D  T   +V A
Sbjct: 63  LDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKA 122

Query: 72  IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN-------------- 117
                    G Q H  I + G+DS+V+VQN LV MY+  G I  A+              
Sbjct: 123 CTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSW 182

Query: 118 -----------------KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
                            K+F  M E++LV+W+ ++ G A + +  +A++L+  +Q   + 
Sbjct: 183 TSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVH 242

Query: 161 PDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
            + T  + V+++C H G ++ G + + Y++RN  ++        TA+V +  R G +++A
Sbjct: 243 ANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILG---TALVDMYARCGSIDKA 299

Query: 220 ESFINSMSRNPGPSV--YKALLSACQVHGNREIAVRSAKRV--LDLWPNDPAIYVLLSNV 275
               + +   PG     +  L++   +HG  E A+    R+    L P +     +LS  
Sbjct: 300 IWVFDQL---PGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSAC 356

Query: 276 S 276
           S
Sbjct: 357 S 357



 Score = 37.7 bits (86), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 49/103 (47%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           K +HA + +     +VF  + L+ +      ++ A +VF  +   +L  +NS + G +  
Sbjct: 32  KIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGS 91

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
               ++   + Q ++  + PD  T+  ++ AC   G +D G+Q
Sbjct: 92  KDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQ 134


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 105/283 (37%), Positives = 175/283 (61%), Gaps = 2/283 (0%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           ++ + W  +++G    G  E+ALK + EMR  G   D  T  +++    V+S  +EG+ +
Sbjct: 695 KSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAI 754

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER-DLVSWNSLLLGCAHHGY 143
           H+LIF + +D +    N L+ MYA CG +  +++VF  M  R ++VSWNSL+ G A +GY
Sbjct: 755 HSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGY 814

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY 203
           + +A+++F+ M+++ I PD  TFL VL+AC HAG +  G + F +M     +E  R +H 
Sbjct: 815 AEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEA-RVDHV 873

Query: 204 TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263
             +V LLGR G+L EA+ FI + +  P   ++ +LL AC++HG+      +A+R+++L P
Sbjct: 874 ACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDMRGEIAAERLIELEP 933

Query: 264 NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            + + YVLLSN+  +   W++A  +R  M +RG++K PGYSW+
Sbjct: 934 QNSSAYVLLSNIYASQGRWEEANALRKAMRDRGVKKVPGYSWI 976



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 4/222 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C+       V+ ++  RN + WNA+I G+ + G   + ++ F +M+ +G +ID FT 
Sbjct: 372 YSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTF 431

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++    V    + G Q H++I K     N+FV N LV MYA CGA+ DA ++F  M +
Sbjct: 432 TSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCD 491

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSWN+++ G        EA  LF +M    I  DG      L AC +   + +G Q 
Sbjct: 492 RDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQV 551

Query: 186 FYLMRNDASLEPPRAEHY-TAIVGLLGRAGFLNEAESFINSM 226
             L          R  H  ++++ +  + G + +A    +SM
Sbjct: 552 HCL---SVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSM 590



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 93/180 (51%), Gaps = 1/180 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +  D + ++  +  R+ +SWN II G+    +  +A   F  M   GI  D   +
Sbjct: 473 YAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACL 532

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + A   + G  +GKQ+H L  K G D  +   + L+ MY+ CG I DA KVFSSM E
Sbjct: 533 ASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPE 592

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
             +VS N+L+ G + +    EAV LF++M    + P   TF  ++ AC     +  G Q+
Sbjct: 593 WSVVSMNALIAGYSQNNL-EEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQF 651



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 102/183 (55%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I TY       D + ++  + + + ++WN +I+G    G    A++ F  MR++ +    
Sbjct: 268 INTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTR 327

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ AIG+++    G  +HA   K+G  SN++V + LV MY+ C  +  A KVF +
Sbjct: 328 STLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEA 387

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++ER+ V WN+++ G AH+G S + ++LF  M+ +    D  TF  +LS C  +  ++ G
Sbjct: 388 LEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMG 447

Query: 183 LQY 185
            Q+
Sbjct: 448 SQF 450



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 133/306 (43%), Gaps = 15/306 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    D + V+SS+   + +S NA+IAG+    + E+A+  F EM   G++   
Sbjct: 571 IDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQ-NNLEEAVVLFQEMLTKGVNPSE 629

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFS 121
            T  +IV A         G Q H  I K G+ S   ++   L+ +Y     + +A  +FS
Sbjct: 630 ITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFS 689

Query: 122 SMDE-RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            +   + +V W  ++ G + +G+  EA++ +++M+     PD  TF+ VL  C     + 
Sbjct: 690 ELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLR 749

Query: 181 KGLQ----YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYK 236
           +G       F+L  +   L          ++ +  + G +  +    + M R      + 
Sbjct: 750 EGRAIHSLIFHLAHDLDELTS------NTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWN 803

Query: 237 ALLSACQVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294
           +L++    +G  E A++   + R   + P++     +L+  S A    D       ++  
Sbjct: 804 SLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQ 863

Query: 295 RGIRKK 300
            GI  +
Sbjct: 864 YGIEAR 869



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 127/286 (44%), Gaps = 25/286 (8%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      +  ++S+  ++  +WN++++ + ++G   + L+ F  + +  I  + FT 
Sbjct: 105 YAKCAQVSYAEKQFNSLE-KDVTAWNSMLSMYSSIGQPGKVLRSFVSLFENLIFPNKFTF 163

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + ++      +  + G+Q+H  + K+G + N +    LV MYA C  + DA +VF  + +
Sbjct: 164 SIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVD 223

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            + V W  L  G    G   EAV +FE+M+    +PD   F+ V++     G +      
Sbjct: 224 PNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISLGKLKDARLL 283

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAG--------FLNEAESFINSMSRNPGPSVYKA 237
           F        +  P    +  ++   G+ G        FLN  +S + S     G     +
Sbjct: 284 F------GEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLG-----S 332

Query: 238 LLSACQVHGNREIA--VRSAKRVLDLWPNDPAIYVLLSNVSKATDC 281
           +LSA  +  N ++   V +    L L  N   IYV  S VS  + C
Sbjct: 333 VLSAIGIVANLDLGLVVHAEAIKLGLASN---IYVGSSLVSMYSKC 375



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 5/172 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I  Y++C        V+  +R R N +SWN++I G+   G  E ALK F  MRQ+ I  D
Sbjct: 774 IDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPD 833

Query: 62  YFTITSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
             T   ++ A        +G+++   +I + G ++ V     +V +    G + +A+   
Sbjct: 834 EITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFI 893

Query: 121 SSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            + + + D   W+SLL  C  HG         E++   E++P  ++  V+LS
Sbjct: 894 EAQNLKPDARLWSSLLGACRIHGDDMRGEIAAERL--IELEPQNSSAYVLLS 943



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK +H+    +G DS   + N +V +YA C  ++ A K F+S+ E+D+ +WNS+L   + 
Sbjct: 79  GKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLSMYSS 137

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G   + ++ F  + +  I P+  TF +VLS       ++ G Q
Sbjct: 138 IGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQ 181


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 170/291 (58%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++  +  RN ++W  ++ G+      E AL+ F+ M   GI  +  T    V A   +
Sbjct: 273 QELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNL 332

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +G  EG+Q+H +I K  +  + F+++ L+ +YA CG I  A KVF+   E+D++SWN ++
Sbjct: 333 AGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGMI 392

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
              AHHG   EA+ L+E+MQ+   KP+  T++ +LSAC H+G +D+GL+ F  M  D S+
Sbjct: 393 AAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSI 452

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
              R EHYT ++ L  RAG L +A+  I+ +   P  +V+ ALL  C  HGN  I   +A
Sbjct: 453 -AVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAA 511

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +L+  PN+   Y LL N+  +   W +A  IR+ M +RG++K+PG SW+
Sbjct: 512 RNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWI 562



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 15/169 (8%)

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           D D  + T++V A        + +   AL  +     NV     L+  YA  G +++A  
Sbjct: 63  DRDVVSWTALVAAYACQGMLHDAR---ALFDRPDARRNVVTWTALLSGYARAGRVDEAEA 119

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           +F  M ER++VSWN++L      G   +A  LF  M       D  ++ ++L+A   +G 
Sbjct: 120 LFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVR----DAGSWNILLAALVRSGN 175

Query: 179 IDKGLQYFYLMRNDASLEPPR-AEHYTAIVGLLGRAGFLNEAESFINSM 226
           IDK  + F  M       P R    +T +V  + R+G +NEA +  + M
Sbjct: 176 IDKARKLFDRM-------PERNVMAWTTMVAGIARSGSVNEARALFDGM 217



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 14/177 (7%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN ++W  ++AG    GS  +A   F  M +           ++V    +I
Sbjct: 180 RKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPE----------RNVVSWNAMI 229

Query: 76  SGFKEGK---QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           SG+       + H L  K+    ++   N ++  +     +  A ++F  M  R++V+W 
Sbjct: 230 SGYARNHMIDEAHDLFMKMPT-RDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWT 288

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           +++ G      S  A+QLF  M    I+P+  TFL  + AC +   + +G Q   ++
Sbjct: 289 TMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMI 345



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDIDYF 63
           Y+R     + + ++  +  RN +SWN ++  + + G    A   F+ M  R AG      
Sbjct: 108 YARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGS----- 162

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
              +I+ A  V SG  +  +    +F    + NV     +V   A  G++N+A  +F  M
Sbjct: 163 --WNILLAALVRSGNIDKARK---LFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGM 217

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
            ER++VSWN+++ G A +    EA  LF +M   +I
Sbjct: 218 PERNVVSWNAMISGYARNHMIDEAHDLFMKMPTRDI 253



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 73/145 (50%), Gaps = 14/145 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---DIDY 62
           Y++C   +  + V++  + ++ ISWN +IA + + G G +A+  + +M++ G    D+ Y
Sbjct: 364 YAKCGEIILARKVFNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTY 423

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR----LVFMYAICGAINDANK 118
             + S     G++    EG ++   + K   D ++ V++     L+ + +  G + DA +
Sbjct: 424 VGLLSACSHSGLVD---EGLRIFEYMVK---DRSIAVRDEHYTCLIDLCSRAGRLGDAKR 477

Query: 119 VFSSMD-ERDLVSWNSLLLGCAHHG 142
           +   +  E     WN+LL GC  HG
Sbjct: 478 LIHFLKVEPSSTVWNALLGGCNSHG 502



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 20/166 (12%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
           NR V   A  G ++DA ++F    +RD+VSW +L+   A  G   +A  LF+   + + +
Sbjct: 39  NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFD---RPDAR 95

Query: 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDASLEPPRAEHYTAIVGLLGRAGFLNE 218
            +  T+  +LS    AG +D+    F  M  RN  S      E YT+       +G + +
Sbjct: 96  RNVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWN-TMLEAYTS-------SGRVGD 147

Query: 219 AESFINSMS-RNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263
           A +  N M  R+ G   +  LL+A    GN    +  A+++ D  P
Sbjct: 148 ACTLFNGMPVRDAGS--WNILLAALVRSGN----IDKARKLFDRMP 187


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 117/299 (39%), Positives = 175/299 (58%), Gaps = 19/299 (6%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEM----------------RQAG-IDIDYFTITSI 68
           N +SW+A+IA F   G G + L  F EM                +Q G +  + FTI+  
Sbjct: 113 NVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCA 172

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           + A   ++  + G+Q+HA I +  +DS  ++V N L+ MYA  G I+ A  VF ++ +++
Sbjct: 173 LIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKN 232

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
            VSW SL+ G   HG  +EA+++F++M++  ++PDG T LVVL AC H+G ID+G+++F 
Sbjct: 233 FVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFN 292

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN 247
            M  +  + P + EHY  +V LLGRAG LNEA   I  M   P   V+ ALLS C++H N
Sbjct: 293 SMSKEFGVIPGQ-EHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHAN 351

Query: 248 REIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            E+   +AK++L+L   +   Y LLSN+      W D   +R+LM N GIRK+PG SWV
Sbjct: 352 VELGEHAAKQLLELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWV 410



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 77/131 (58%)

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D  ++ +++ A   +  +  GK +H +  + G   ++FV N LV MYA CG +++A+KVF
Sbjct: 12  DVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVF 71

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             + E+D+VSWN+++ G +  G   +A+ LFE+M++  I+ +  ++  V++A    G   
Sbjct: 72  DRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGC 131

Query: 181 KGLQYFYLMRN 191
           + L  F  M++
Sbjct: 132 ETLDVFREMQH 142



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 2/153 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+ +++ +N +SW +++ G+   G G++AL+ F EMR+ G+  D  T+  ++ A      
Sbjct: 224 VFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGM 283

Query: 78  FKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD-ERDLVSWNSLL 135
             +G +  +++  + G          +V +    G +N+A ++   M  E   + W +LL
Sbjct: 284 IDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALL 343

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
            GC  H          +Q+ +   + DG+  L+
Sbjct: 344 SGCRIHANVELGEHAAKQLLELNSENDGSYTLL 376


>gi|357129835|ref|XP_003566566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Brachypodium distachyon]
          Length = 614

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 168/301 (55%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D  +V+   R  ++IS   I+ GF   G  E+A + F+EM   GI ID   +
Sbjct: 268 YSKCGLMEDTLSVFRLCRQPDEISLTVILVGFAQNGLEEKAFELFAEMAGEGILIDTNMV 327

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++GA G  + F  GKQ+HAL+ K  +  N++V N L+ MY+ CG + ++ +VF+    
Sbjct: 328 SAVLGAFGASAPFALGKQIHALVIKKCFGRNIYVCNGLINMYSKCGELEESIQVFNETPS 387

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++ +SWNS++   A HG   E  +LFE M+     P   TFL +L  C H G   KGL+ 
Sbjct: 388 KNSISWNSIIAAFARHGQGSEVFKLFESMKADGANPTDVTFLSLLHGCSHVGSAKKGLEI 447

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M ++  +  PR EHY  +V +LGRAG L +A SFI          +++AL+ AC   
Sbjct: 448 LNSMSSEYGI-LPRVEHYACVVDMLGRAGLLEDARSFIEDGPFKDSALLWQALMGACSFR 506

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN EI   +A+++L L P+ PA YVLLSN+  +   WDD   +   M   G+RK  G SW
Sbjct: 507 GNSEIGKYAAEKLLHLDPDSPAAYVLLSNIYSSEGRWDDRARVMKSMREMGLRKDTGKSW 566

Query: 306 V 306
           +
Sbjct: 567 I 567



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 1/170 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y  C+S    +  +  +  RN I+W A+I+G       + ++  F +MR+  +D + 
Sbjct: 165 VTAYFECESPGSAERAFHGMAERNVITWTAMISGMAREELYKDSIVLFQQMRRT-VDANS 223

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T +S + A       KEG+Q+H L+ K G ++++ V++ L+ +Y+ CG + D   VF  
Sbjct: 224 ATYSSSLLACAGSLALKEGQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFRL 283

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
             + D +S   +L+G A +G   +A +LF +M    I  D      VL A
Sbjct: 284 CRQPDEISLTVILVGFAQNGLEEKAFELFAEMAGEGILIDTNMVSAVLGA 333



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 11/190 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI----- 60
           Y+RC    +   V+  +R R+ +SWN++I         E AL  F  M ++         
Sbjct: 65  YARCGRHAEAARVFDEMRIRDSVSWNSLIGS----SGAEDALSQFRRMLRSSSSPGGGVS 120

Query: 61  -DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            D+ T T+++ A    +       +H L+   G+++ V V N LV  Y  C +   A + 
Sbjct: 121 CDHATFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESPGSAERA 180

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M ER++++W +++ G A     ++++ LF+QM++T +  +  T+   L AC  +  +
Sbjct: 181 FHGMAERNVITWTAMISGMAREELYKDSIVLFQQMRRT-VDANSATYSSSLLACAGSLAL 239

Query: 180 DKGLQYFYLM 189
            +G Q   L+
Sbjct: 240 KEGQQIHGLV 249



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 21/131 (16%)

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYD----------SNVFVQ-NRLVFMYA 108
           +DY  ++ ++   G  +  + G  +H  I K               +V V  N LV MYA
Sbjct: 7   LDYAYLSGLLSRCGRAADHRLGAALHVTIVKNPSHFLLCPLRPSLRHVLVAWNALVSMYA 66

Query: 109 ICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP------D 162
            CG   +A +VF  M  RD VSWNSL+        + +A+  F +M ++   P      D
Sbjct: 67  RCGRHAEAARVFDEMRIRDSVSWNSLIGSSG----AEDALSQFRRMLRSSSSPGGGVSCD 122

Query: 163 GTTFLVVLSAC 173
             TF  VLSAC
Sbjct: 123 HATFTTVLSAC 133


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 115/305 (37%), Positives = 178/305 (58%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +++YS+  S+ +  +++  +  ++ +SW+A++  +   G    A   F +M   G+  + 
Sbjct: 398 MVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNE 457

Query: 63  FTITSIVGAIGV-ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           FTI+S + A     +G   G+Q HA+  K      + V + LV MYA  G+I +A  VF 
Sbjct: 458 FTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFE 517

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
              +RDL+SWNS+L G A HGYS++A+ +F QM+   I  DG TFL V+  C HAG +++
Sbjct: 518 RQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEE 577

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G QYF LM  D  + P   +HY  +V L  RAG L+E  S I  M    GP++++ALL A
Sbjct: 578 GQQYFDLMVRDYGITPT-MDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGA 636

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+VH N E+   +A+++L L P D A YVLLSN+  A   W +  ++R LM  + +RK+ 
Sbjct: 637 CRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEA 696

Query: 302 GYSWV 306
           G SW+
Sbjct: 697 GCSWI 701



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 134/281 (47%), Gaps = 15/281 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y    S LD + V+  +  RN ++W +++ G+   G     +  F  MR  G+  + FT 
Sbjct: 101 YMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTF 160

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++  +        G+ +HA   K G  S VFV N L+ MYA CG + +A  VF  M+ 
Sbjct: 161 SSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMET 220

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWN+L+ G   +G   EA+QLF   + +      +T+  V++ C +       L++
Sbjct: 221 RDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCAN-------LKH 273

Query: 186 FYLMRNDASLEPPRAEH-----YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
             L R   S       H      TA++    +AG L++A      MS +     + A++ 
Sbjct: 274 LGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMID 333

Query: 241 ACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKAT 279
            C  +G+  +A     R+ +  + PND     +L+ VS+A+
Sbjct: 334 GCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILT-VSEAS 373



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 7/177 (3%)

Query: 10  DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIV 69
           D +LD   + S   ++N +SW A+I G    G    A   FS MR+ G+  +  T ++I+
Sbjct: 310 DKALDVFLLMSG--SQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL 367

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
                +S      Q+HA + K  Y+    V   L+  Y+   +  +A  +F  +D++D+V
Sbjct: 368 ----TVSEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVV 423

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH-AGFIDKGLQY 185
           SW+++L   A  G    A   F +M    +KP+  T    + AC   A  +D G Q+
Sbjct: 424 SWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQF 480



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 2/141 (1%)

Query: 44  EQALKCFSEM-RQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYD-SNVFVQN 101
            QAL  F +  R+ G  +    +  I+   G +     GKQ+HAL  + G+D  ++ V  
Sbjct: 36  HQALDHFLDAHRRQGRCVGGGALLGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGT 95

Query: 102 RLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
            LV MY    ++ D  KVF  M +R++V+W SLL G    G   + + LF +M+   + P
Sbjct: 96  SLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWP 155

Query: 162 DGTTFLVVLSACCHAGFIDKG 182
           +  TF  VLS     G +D G
Sbjct: 156 NPFTFSSVLSMVASQGMVDLG 176


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 104/289 (35%), Positives = 171/289 (59%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+  SWNA+I G+   GSGE+ALK  S+M + G+  D+ T+ S++ A   ++ 
Sbjct: 255 LFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLAS 314

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            +EG++ H L+ K GY+S + + N L+ MY  CG+I D+   F  +D  D+VSWN+++  
Sbjct: 315 LQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAA 374

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG+   A+  F +M+   ++PDG TFL +LSAC HAG + + L +F  M     +  
Sbjct: 375 FARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIXSYKI-V 433

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
            R EH+  +V +L R G + +A   I  M       ++ ALL+AC VH N ++   +AK+
Sbjct: 434 XRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKK 493

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++L P +   YV+LSN+  A   W +   +R LM  +G++K+P YSW+
Sbjct: 494 IVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWM 542



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 114/269 (42%), Gaps = 44/269 (16%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           R D   +   ++  +  RN IS+ A++ G+  +G  EQA   F+ M Q           +
Sbjct: 152 RYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQ----------KN 201

Query: 68  IVGAIGVISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +V    +ISG+ E  +      +F+   D N+     ++  Y   G  + A  +F  +  
Sbjct: 202 VVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPC 261

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDL SWN+++ G A +G   EA++L  QM K  ++PD +T + VL+AC     + +G + 
Sbjct: 262 RDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKT 321

Query: 186 FYLMRN------------------------DASL-----EPPRAEHYTAIVGLLGRAGFL 216
             L+                          D+ L     + P    + A++    R GF 
Sbjct: 322 HVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFY 381

Query: 217 NEAESFINSMSRN---PGPSVYKALLSAC 242
           + A +    M  N   P    + +LLSAC
Sbjct: 382 DRALASFGEMRSNRVEPDGITFLSLLSAC 410



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 14/150 (9%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
            +Q H L  K+    +V+  N  +   A  G I  A +VF  M  RD VSWNS++ G   
Sbjct: 31  NRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWK 90

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDASLEPP 198
           +G   E+ +LF  M    +     ++  +++ C     ID+  QYF  M  RN AS    
Sbjct: 91  NGCFDESKRLFGLMPTKNV----VSWNSMIAGCIEDERIDEAWQYFQAMPQRNTAS---- 142

Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
               + A++  L R   + EA      M R
Sbjct: 143 ----WNAMISGLVRYDRVEEASRLFEEMPR 168



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 12/175 (6%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S LD +  +  +   + +SWNA+IA F   G  ++AL  F EMR   ++ D 
Sbjct: 341 ITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDG 400

Query: 63  FTITSIVGAIGVISGFKEGKQ-MHALI--FKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            T  S++ A G      E     +++I  +KI      F    LV + +  G +  A K+
Sbjct: 401 ITFLSLLSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFAC--LVDILSRGGQVEKAYKI 458

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLS 171
              M  E D   W +LL  C  H      V+L E   K   E++P  +   VVLS
Sbjct: 459 IQEMPFEADCGIWGALLAACHVHLN----VKLGELAAKKIVELEPQNSGAYVVLS 509



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 102/255 (40%), Gaps = 40/255 (15%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI--------------DID 61
           + V+  +  R+ +SWN+II G+   G  +++ + F  M    +               ID
Sbjct: 67  RQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERID 126

Query: 62  ----YFTITSIVGAI---GVISGFKEGKQMH--ALIFKIGYDSNVFVQNRLVFMYAICGA 112
               YF             +ISG     ++   + +F+     NV     +V  YA  G 
Sbjct: 127 EAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGE 186

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           I  A  +F+ M ++++VSW  ++ G   +G   EA  LFEQM    I         +++ 
Sbjct: 187 IEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNI----VAMTAMITG 242

Query: 173 CCHAGFIDKGLQYFYLM--RNDASLEPPRAEHYTAIVGLLGRAGFLNEA---ESFINSMS 227
            C  G  DK    F  +  R+ AS        + A++    + G   EA    S +  M 
Sbjct: 243 YCKEGKTDKAKILFDQIPCRDLAS--------WNAMITGYAQNGSGEEALKLHSQMLKMG 294

Query: 228 RNPGPSVYKALLSAC 242
             P  S   ++L+AC
Sbjct: 295 MQPDHSTLISVLTAC 309


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 179/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFT 64
           Y++C S  + + V+S +R ++ ISWN II G+       +AL  F+ +  +     D  T
Sbjct: 291 YAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERT 350

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +  ++ A   +S F +G+++H  I + GY S+  V N LV MYA CGA+  A+ +F  + 
Sbjct: 351 VACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA 410

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +DLVSW  ++ G   HG+ +EA+ LF QM++  I+ D  +F+ +L AC H+G +D+G +
Sbjct: 411 SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWR 470

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +F +MR++  +EP   EHY  IV +L R G L +A  FI +M   P  +++ ALL  C++
Sbjct: 471 FFNIMRHECKIEPT-VEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 529

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H + ++A + A++V +L P +   YVL++N+    + W+    +R  +  RG+RK PG S
Sbjct: 530 HHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 589

Query: 305 WV 306
           W+
Sbjct: 590 WI 591



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 106/188 (56%), Gaps = 2/188 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + V+  +  R+ +S+ ++IAG+   G   +A+K F EM + GI  D +T+
Sbjct: 190 YSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 249

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++          EGK++H  I +     ++FV N L+ MYA CG++ +A  VFS M  
Sbjct: 250 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 309

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFE-QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +D++SWN+++ G + + Y+ EA+ LF   +++    PD  T   VL AC      DKG +
Sbjct: 310 KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE 369

Query: 185 -YFYLMRN 191
            + Y+MRN
Sbjct: 370 IHGYIMRN 377



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 7/224 (3%)

Query: 4   LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           L   R DS+   + V+  +  R+ ISWN+II G+ + G  E+ L  F +M  +GI+ID  
Sbjct: 90  LKNQRVDSA---RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLA 146

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           TI S+            G+ +H++  K  +       N L+ MY+ CG ++ A  VF  M
Sbjct: 147 TIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREM 206

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            +R +VS+ S++ G A  G + EAV+LFE+M++  I PD  T   VL+ C     +D+G 
Sbjct: 207 SDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGK 266

Query: 184 Q-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           + + ++  ND   +   +    A++ +  + G + EAE   + M
Sbjct: 267 RVHEWIKENDLGFDIFVS---NALMDMYAKCGSMQEAELVFSEM 307



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           +  V+    + WN ++      G    ++  F +M  +G+++D +T + +  +   +   
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
             G+Q+H  I K G+     V N LV  Y     ++ A KVF  M ERD++SWNS++ G 
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             +G + + + +F QM  + I+ D  T + V + C  +  I  G
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 164


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 177/306 (57%), Gaps = 6/306 (1%)

Query: 6   YSRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ--AGIDID 61
           Y++C S+   + ++ SV  + R+ ++W  +I G+   G    AL+ FS M +    I  +
Sbjct: 553 YAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPN 612

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDS-NVFVQNRLVFMYAICGAINDANKVF 120
            FT++  + A   ++  + G+Q+HA + +  Y S  +FV N L+ MY+  G ++ A  VF
Sbjct: 613 DFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVF 672

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            +M +R+ VSW SL+ G   HG   +A+++F++M+K  + PDG TFLVVL AC H+G +D
Sbjct: 673 DNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVD 732

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
            G+ +F  M  D  ++P   EHY  +V L GRAG L EA   IN M   P P V+ ALLS
Sbjct: 733 HGINFFNRMSKDFGVDPG-PEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLS 791

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           AC++H N E+   +A R+L+L   +   Y LLSN+      W D   IR  M   GI+K+
Sbjct: 792 ACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKR 851

Query: 301 PGYSWV 306
           PG SW+
Sbjct: 852 PGCSWI 857



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 95/188 (50%), Gaps = 4/188 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTR---NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-DID 61
           Y +C +     N++  +  R   + +SWN++++ +        AL  F +M    +   D
Sbjct: 304 YGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPD 363

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             ++ +I+ A   ++    G+Q+H    + G   +VFV N +V MYA CG + +ANKVF 
Sbjct: 364 VISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQ 423

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M  +D+VSWN+++ G +  G    A+ LFE+M +  I+ D  T+  V++     G   +
Sbjct: 424 RMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCE 483

Query: 182 GLQYFYLM 189
            L  F  M
Sbjct: 484 ALDVFRQM 491



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 128/261 (49%), Gaps = 20/261 (7%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH-- 85
           ++W A+I G+   G G +AL  F +M   G   +  T+ S++ A   +     GK+ H  
Sbjct: 466 VTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCY 525

Query: 86  ALIFKIGYD------SNVFVQNRLVFMYAICGAINDANKVFSSMD--ERDLVSWNSLLLG 137
           A+ F +  D       ++ V N L+ MYA C +   A K+F S+   +RD+V+W  ++ G
Sbjct: 526 AIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGG 585

Query: 138 CAHHGYSREAVQLFEQMQKTE--IKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN-DA 193
            A HG +  A+QLF  M K +  IKP+  T    L AC     +  G Q + Y++RN   
Sbjct: 586 YAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYG 645

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           S+    A     ++ +  ++G ++ A+   ++M +    S + +L++   +HG  E A+R
Sbjct: 646 SVMLFVA---NCLIDMYSKSGDVDTAQIVFDNMPQRNAVS-WTSLMTGYGMHGRGEDALR 701

Query: 254 --SAKRVLDLWPNDPAIYVLL 272
                R + L P+     V+L
Sbjct: 702 VFDEMRKVPLVPDGITFLVVL 722



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 4/148 (2%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN +I    +LGS       + +M+  G   D++T   +  A   +S    G  +HA + 
Sbjct: 227 WNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVS 286

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER---DLVSWNSLLLGCAHHGYSRE 146
           + G+ SNVFV N +V MY  CGA+  A+ +F  +  R   DLVSWNS++        +  
Sbjct: 287 RSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANT 346

Query: 147 AVQLFEQMQKTEI-KPDGTTFLVVLSAC 173
           A+ LF +M    +  PD  + + +L AC
Sbjct: 347 ALALFHKMTTRHLMSPDVISLVNILPAC 374


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 170/304 (55%), Gaps = 2/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS C    D + V+  ++ ++ + WN++ +G+      E+AL  F E++ +    D 
Sbjct: 496 IAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDE 555

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT   +V A G ++  + G++ H  + K G + N ++ N L+ MYA CG+  DA+K F S
Sbjct: 556 FTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDS 615

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              RD+V WNS++   A+HG  R+A+Q+ E+M    I+P+  TF+ VLSAC HAG ++ G
Sbjct: 616 AASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDG 675

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+ F LM        P  EHY  +V LLGRAG LNEA   I  M   P   V+++LLS C
Sbjct: 676 LKQFELMLRFGI--EPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLSGC 733

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
              GN E+A  +A+  +   P D   + LLSN+  +   W DA  +R  M   G+ K+PG
Sbjct: 734 AKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIYASKGMWTDAKKVRERMKFEGVVKEPG 793

Query: 303 YSWV 306
            SW+
Sbjct: 794 RSWI 797



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 93/167 (55%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+ ++  ++ ++W  +I+G   +G    +L+ F ++ +  +  D + +++++ A  ++  
Sbjct: 205 VFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPF 264

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + GKQ+HA I + G++ +  + N L+  Y  CG +  A+K+F  M  ++++SW +LL G
Sbjct: 265 LEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSG 324

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
              +   +EA++LF  M K  +KPD      +L++C     ++ G Q
Sbjct: 325 YKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQ 371



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 138/280 (49%), Gaps = 12/280 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSG---EQALKCFSEMRQAGIDIDY 62
           Y++CD   + + V+      + + +NA+I G+  LG+      AL  F +MR   I    
Sbjct: 395 YAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSL 454

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S++ A   ++     KQ+H L+FK G + ++F  + L+ +Y+ C  + D+  VF  
Sbjct: 455 LTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDE 514

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  +DLV WNS+  G      + EA+ LF ++Q +  +PD  TF+ +++A  +   +  G
Sbjct: 515 MKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLG 574

Query: 183 LQYF-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLS 240
            ++   L++      P       A++ +  + G   +A ++F ++ SR+     + +++S
Sbjct: 575 QEFHCQLLKRGLECNPYIT---NALLDMYAKCGSPEDAHKAFDSAASRD--VVCWNSVIS 629

Query: 241 ACQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
           +   HG    A++  ++++   + PN      +LS  S A
Sbjct: 630 SYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHA 669



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 88/173 (50%), Gaps = 3/173 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y +C        ++  +  +N ISW  +++G+      ++A++ F+ M + G+  D 
Sbjct: 291 IDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDM 350

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F  +SI+ +   +   + G Q+HA   K    ++ +V N L+ MYA C  + +A KVF  
Sbjct: 351 FACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDI 410

Query: 123 MDERDLVSWNSLLLGCAHHGYSRE---AVQLFEQMQKTEIKPDGTTFLVVLSA 172
               D+V +N+++ G +  G   E   A+ +F  M+   I+P   TF+ +L A
Sbjct: 411 FAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRA 463



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 102/200 (51%), Gaps = 12/200 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFT 64
           YSR    +  + V+  +  RN ++W+ +++   + G  E++L  F +  R      + + 
Sbjct: 89  YSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYI 148

Query: 65  ITSIVGAIGVISGFKEGK----QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           ++S + A   + G   G+    Q+ + + K  +D +V+V   L+  Y   G I+ A  VF
Sbjct: 149 LSSFIQACSGLDG--SGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVF 206

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            ++ E+  V+W +++ GC   G S  ++QLF Q+ +  + PDG     VLSAC    F++
Sbjct: 207 DALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLE 266

Query: 181 KGLQ-YFYLMR----NDASL 195
            G Q + +++R     DASL
Sbjct: 267 GGKQIHAHILRYGHEKDASL 286



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 44/74 (59%)

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +H  I   G + + ++ N L+ +Y+  G +  A KVF  M ER+LV+W++++  C HHG+
Sbjct: 66  VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGF 125

Query: 144 SREAVQLFEQMQKT 157
             E++ +F    +T
Sbjct: 126 YEESLVVFLDFWRT 139


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 114/295 (38%), Positives = 175/295 (59%), Gaps = 5/295 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYFTITSIVGAIG 73
           ++++  +  RN +SW A+I+G+   G  EQAL  F EM Q G ++  ++ TI S++ A  
Sbjct: 267 EDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACA 326

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDLVSW 131
             +  + G+++H     IG   N  VQ  L  MYA C ++ +A   F  + +  ++L++W
Sbjct: 327 QSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAW 386

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
           N+++   A HG   EAV +FE M +  ++PD  TF+ +LS C H+G ID GL +F  M  
Sbjct: 387 NTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGT 446

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
             S+EP R EHY  +V LLGRAG L EA+  I+ M    GPSV+ ALL+AC+ H N EIA
Sbjct: 447 IHSVEP-RVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIA 505

Query: 252 VRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             +A+R+  L P++   YVLLSN+      W++   +R L+  +G++K PG SW+
Sbjct: 506 ELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWI 560



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 10/196 (5%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQA---LKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           V+  +   + + +N+II  +   G        L+ ++ M   G+  D FT+  ++ +   
Sbjct: 134 VFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCAD 193

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +S    G+ +H    ++G + + +V   L+ MY  CG I DA K+F  M  RD+ SWN+L
Sbjct: 194 LSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNAL 253

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + G    G    A  LFE+M+   I     ++  ++S     GF ++ L  F  M  D S
Sbjct: 254 IAGYMKEGEIGVAEDLFERMEHRNI----VSWTAMISGYTQNGFAEQALGLFDEMLQDGS 309

Query: 195 LEPPRAEHYTAIVGLL 210
              P   ++  IV +L
Sbjct: 310 EMKP---NWVTIVSVL 322



 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 3/99 (3%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K G+Q HA I   G   N F+  ++V MYA  G ++ A  VF  +D    + +NS++  
Sbjct: 93  IKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRA 152

Query: 138 CAHHG---YSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
              HG        ++ + +M    +  D  T   VL +C
Sbjct: 153 YTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSC 191


>gi|356565618|ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 619

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 112/290 (38%), Positives = 174/290 (60%), Gaps = 5/290 (1%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           NV+  +   + ++WNA+I G  ++G  + AL CF EM+  G+ ID  TI+SI+     + 
Sbjct: 331 NVFWRMDKSDVVTWNAMIFGLVDVGLVDLALDCFREMQGRGVGIDGRTISSIL----PVC 386

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             + GK++HA + K  +   + V N L+ MY+I G I  A  VFS+M  RDLVSWN+++ 
Sbjct: 387 DLRCGKEIHAYVRKCNFSGVIPVYNALIHMYSIRGCIAYAYSVFSTMVARDLVSWNTIIG 446

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G   HG  + A++L ++M  + ++PD  TF   LSAC H+G +++G++ FY M  D S+ 
Sbjct: 447 GFGTHGLGQTALELLQEMSGSGVRPDLVTFSCALSACSHSGLVNEGIELFYRMTKDFSMT 506

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
           P R EH++ +V +L RAG L +A  FIN M + P   V+ ALL+ACQ H N  +   +A+
Sbjct: 507 PAR-EHFSCVVDMLARAGRLEDAFHFINQMPQEPNNHVWGALLAACQEHQNISVGKLAAE 565

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++ L P++   YV LSN+      WDDA  +R +M   G+ K  G+S V
Sbjct: 566 KLISLEPHEAGHYVTLSNIYSRAGRWDDAARVRKMMDGHGLLKPSGHSLV 615



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 93/172 (54%), Gaps = 8/172 (4%)

Query: 14  DFQNVYSSVRTRNQIS------WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           D  ++ S+V   +QIS      + +I++     G G Q ++ ++E+R+ G+  D +    
Sbjct: 49  DSNDLRSAVTLLHQISHPNVFAFTSILSFHSRHGLGHQCIQTYAELRRNGVVPDGYVFPK 108

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           ++ A   +S F  G+ +H  +   G +SN+ V+N ++ MY+ CG +  A +VF  M ERD
Sbjct: 109 VLKACAQLSRFGSGRGVHKDVVVFGEESNLQVRNSVLDMYSKCGDVGSARQVFDEMSERD 168

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLSACCHAG 177
           + SWNS++ G   +G   +AV++   M+K     +PD  T+  V+ A C  G
Sbjct: 169 VFSWNSMMSGYVWNGLPHKAVEVLGVMKKDGCGCEPDVVTWNTVMDAYCRMG 220



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 5/173 (2%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYF 63
            Y R     +   V+  +   N ISW  +I+G+  +G  + +L  F +M   G +  D  
Sbjct: 215 AYCRMGQCCEASRVFGEIEDPNVISWTILISGYAGVGRHDVSLGIFRQMVNVGMVSPDVD 274

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR---LVFMYAICGAINDANKVF 120
            ++ ++ +   +     GK++H    KI    +VF ++    L+ +YA  G ++ A+ VF
Sbjct: 275 ALSGVLVSCRHLGALASGKEIHGYGLKI-MCGDVFYRSAGAALLMLYAGWGRLDCADNVF 333

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
             MD+ D+V+WN+++ G    G    A+  F +MQ   +  DG T   +L  C
Sbjct: 334 WRMDKSDVVTWNAMIFGLVDVGLVDLALDCFREMQGRGVGIDGRTISSILPVC 386



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 46/96 (47%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             + KQ+H  I   G   N F   +L+ +YA    +  A  +   +   ++ ++ S+L  
Sbjct: 18  LNQAKQLHHRILLTGSHHNHFFVTKLIQIYADSNDLRSAVTLLHQISHPNVFAFTSILSF 77

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            + HG   + +Q + ++++  + PDG  F  VL AC
Sbjct: 78  HSRHGLGHQCIQTYAELRRNGVVPDGYVFPKVLKAC 113



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 34/178 (19%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + V+  +  R+  SWN++++G+   G   +A++    M++ G        
Sbjct: 148 YSKCGDVGSARQVFDEMSERDVFSWNSMMSGYVWNGLPHKAVEVLGVMKKDGC------- 200

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
                                     G + +V   N ++  Y   G   +A++VF  +++
Sbjct: 201 --------------------------GCEPDVVTWNTVMDAYCRMGQCCEASRVFGEIED 234

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKG 182
            +++SW  L+ G A  G    ++ +F QM     + PD      VL +C H G +  G
Sbjct: 235 PNVISWTILISGYAGVGRHDVSLGIFRQMVNVGMVSPDVDALSGVLVSCRHLGALASG 292


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 169/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D   V++ + TRN +SW A+IAG+      ++ALK F EM   GI+ +  T+
Sbjct: 250 YSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTV 309

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS + A   +    +G+ +H  + +     N  +   LV MY+ CG +++A  VF  +  
Sbjct: 310 TSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPA 369

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+  W +++ G A  G +  ++ LF QM ++ ++P+G TFL VLSAC H G +D+GL+ 
Sbjct: 370 KDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLEL 429

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM  D  LE P  +HY  +V LLGRAG L EA  FI SM   P P V+ AL S C +H
Sbjct: 430 FRLMICDYRLE-PNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIH 488

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
              E+       ++ L P+    Y+LL+N+      W+ A ++R LM  +G+ K PG SW
Sbjct: 489 KAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSW 548

Query: 306 V 306
           +
Sbjct: 549 I 549



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 119/222 (53%), Gaps = 8/222 (3%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++     ++ +SW A+I G    G   +AL+CF EMR +G+++D  TI S++ A  ++
Sbjct: 158 RRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAML 217

Query: 76  SGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
                G+ +H    + G    +V+V + LV MY+ CG  +DA KVF+ M  R+LVSW +L
Sbjct: 218 RDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGAL 277

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQYFYLMRNDA 193
           + G       +EA+++F++M    I+P+ +T    L+AC   G +D+G   + Y+ R+  
Sbjct: 278 IAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKL 337

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVY 235
            L        TA+V +  + G ++EA   +    + P   VY
Sbjct: 338 GLNSKLG---TALVDMYSKCGCVDEA---LLVFEKLPAKDVY 373



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 1/143 (0%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN II GF      +  L  +S +R  G+  D  T   ++ A   +   +   Q +A I 
Sbjct: 72  WNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN-ENPFQFYAHIV 130

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
           K G D + FVQN LV  +A CG ++ + ++F    ++D+VSW +L+ GC  +G + EA++
Sbjct: 131 KFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALE 190

Query: 150 LFEQMQKTEIKPDGTTFLVVLSA 172
            F +M+ + ++ D  T + VL A
Sbjct: 191 CFVEMRSSGVEVDEVTIVSVLCA 213


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 178/305 (58%), Gaps = 8/305 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + ++  +     +SWN +I+G+   G    AL+ F EM ++ ++ D  T 
Sbjct: 353 YFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITF 412

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A   ++  ++G+++H LI +    +N  V   L+ MYA CGA+ +A  VF  + E
Sbjct: 413 TSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPE 472

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDLVSW S++     HG   EA++LF +M ++ +KPD  TFL +LSAC HAG +D GL +
Sbjct: 473 RDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYH 532

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS----VYKALLSA 241
           F  M N   +  PR EHY+ ++ LLGRAG L+EA   + S   NP  S    +   L SA
Sbjct: 533 FNQMINVYGI-IPRIEHYSCLITLLGRAGRLHEAYEILQS---NPEISDDFQLLSTLFSA 588

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++H N ++ V  A+ ++D  P+D + Y++LSN+  +   WD+   +R+ M + G++K P
Sbjct: 589 CRLHKNLDLGVEIAENLIDKDPDDSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNP 648

Query: 302 GYSWV 306
           G SW+
Sbjct: 649 GCSWI 653



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 108/225 (48%), Gaps = 4/225 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+       ++  +  ++   WN +I+ +   G  E+AL+ F  MR+ G + D  TI
Sbjct: 151 YAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTI 210

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+ + +   +     G+++H  +   G+  + FV   LV MY  CG +  A +VF  M  
Sbjct: 211 TTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPN 270

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH-AGFIDKGLQ 184
           + +V+WNS++ G    G     +QLF++M    +KP  TT    L AC   A  ++    
Sbjct: 271 KTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFV 330

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
           + Y++RN      P     ++++ L  + G +  AE+    M + 
Sbjct: 331 HGYIIRNRIQ---PDIFLNSSLMDLYFKCGKVESAETIFKLMPKT 372



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 127/277 (45%), Gaps = 9/277 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C        V+  +  +  ++WN++I G+   G G   ++ F  M   G+     T+
Sbjct: 252 YGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTL 311

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS + A    +   EGK +H  I +     ++F+ + L+ +Y  CG +  A  +F  M +
Sbjct: 312 TSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPK 371

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
              VSWN ++ G    G   +A++LF +M K+ ++PD  TF  VL+AC     ++KG + 
Sbjct: 372 TTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREI 431

Query: 186 FYLM--RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
             L+  RN  + E        A++ +  + G + EA      +      S + ++++A  
Sbjct: 432 HNLIVERNLGNNEVVMG----ALLDMYAKCGAVEEAFGVFKCLPERDLVS-WTSMITAYG 486

Query: 244 VHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
            HG    A+     +L  ++ P+      +LS  S A
Sbjct: 487 SHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHA 523



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 8/215 (3%)

Query: 16  QNVYSSVRTRNQISW-NAIIAGFCNLGSGEQALKCFSE-MRQAGIDIDYFTITSIVGAIG 73
           +NV+  +    +IS  N ++AG+      ++AL  F + M    +  D +T  S++ A G
Sbjct: 58  KNVFDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACG 117

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +     G+ +H  + K G   ++ V + LV MYA C     A K+F  M ++D+  WN+
Sbjct: 118 GLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNT 177

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++      G   EA++ F  M++   +PD  T    +S+C     +D+G +    + N  
Sbjct: 178 VISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSG 237

Query: 194 SLEPPRAEHYT--AIVGLLGRAGFLNEAESFINSM 226
                R + +   A+V + G+ G L  A      M
Sbjct: 238 F----RMDSFVSAALVDMYGKCGQLEMAIEVFEQM 268



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 16/229 (6%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW-NSLLL 136
            K+GK +H  +  +G  ++V+V   L+ +Y  C   + A  VF  ++    +S  N L+ 
Sbjct: 19  LKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLCNGLMA 78

Query: 137 GCAHHGYSREAVQLFEQ-MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           G   +    EA+ LF++ M    +KPD  T+  VL AC        GL+   L +   + 
Sbjct: 79  GYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKAC-------GGLRRVVLGQMIHTC 131

Query: 196 EPPRAEHYTAIVG--LLGRAGFLNEAESFINSMSRNPGPSV--YKALLSACQVHGNREIA 251
                     +VG  L+G     NE E  +      P   V  +  ++S     G  E A
Sbjct: 132 LVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEA 191

Query: 252 VR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
           +R     R     P+   I   +S+ ++  D  D   +I   + N G R
Sbjct: 192 LRYFGMMRRFGFEPDSVTITTAISSCARLLD-LDRGREIHKELVNSGFR 239


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 179/305 (58%), Gaps = 8/305 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + ++  +     +SWN +I+G+   G   +AL  FSEMR++ ++ D  T 
Sbjct: 353 YFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITF 412

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A   ++  ++GK++H LI +   D+N  V   L+ MYA CGA+++A  VF  + +
Sbjct: 413 TSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPK 472

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDLVSW S++     HG++  A++LF +M ++ +KPD   FL +LSAC HAG +D+G  Y
Sbjct: 473 RDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYY 532

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNP----GPSVYKALLSA 241
           F  M N   +  PR EHY+ ++ LLGRAG L+EA   +    +NP       +   L SA
Sbjct: 533 FNQMINVYGI-IPRVEHYSCLIDLLGRAGRLHEAYEILQ---QNPEIRDDVELLSTLFSA 588

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++H N ++    A+ ++D  P+D + Y+LLSN+  +   WD+   +R+ M   G++K P
Sbjct: 589 CRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNP 648

Query: 302 GYSWV 306
           G SW+
Sbjct: 649 GCSWI 653



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 130/275 (47%), Gaps = 5/275 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C        ++  +  +  ++WN++I+G+   G     ++ F  M   G+     T+
Sbjct: 252 YGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTL 311

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++      +   EGK +H    +     +VFV + L+ +Y  CG +  A K+F  + +
Sbjct: 312 SSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPK 371

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
             +VSWN ++ G    G   EA+ LF +M+K+ ++ D  TF  VL+AC     ++KG + 
Sbjct: 372 SKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEI 431

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             L+  +  L+        A++ +  + G ++EA S    + +    S + ++++A   H
Sbjct: 432 HNLII-EKKLDNNEVV-MGALLDMYAKCGAVDEAFSVFKCLPKRDLVS-WTSMITAYGSH 488

Query: 246 GNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
           G+   A+     +L  ++ P+  A   +LS    A
Sbjct: 489 GHAYGALELFAEMLQSNVKPDRVAFLAILSACGHA 523



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 96/187 (51%), Gaps = 1/187 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C++      +++ +  ++   WN +I+ +   G+ + AL+ F  MR+ G + +  TI
Sbjct: 151 YGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTI 210

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+ + +   +     G ++H  +   G+  + F+ + LV MY  CG +  A ++F  M +
Sbjct: 211 TTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPK 270

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           + +V+WNS++ G    G     +QLF++M    +KP  TT   ++  C  +  + +G   
Sbjct: 271 KTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFV 330

Query: 185 YFYLMRN 191
           + Y +RN
Sbjct: 331 HGYTIRN 337



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 4/214 (1%)

Query: 18  VYSSVRTRNQIS-WNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDIDYFTITSIVGAIGVI 75
           V+ ++    +IS WN ++AG+       +AL+ F ++     +  D +T  S+  A G +
Sbjct: 60  VFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGL 119

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             +  GK +H  + K G   ++ V + LV MY  C A   A  +F+ M E+D+  WN+++
Sbjct: 120 HRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVI 179

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
                 G  ++A++ F  M++   +P+  T    +S+C     +++G++    + N   L
Sbjct: 180 SCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFL 239

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
                   +A+V + G+ G L  A      M + 
Sbjct: 240 LDSFIS--SALVDMYGKCGHLEMAIEIFEQMPKK 271


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 179/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFT 64
           Y++C S  + + V+S +R ++ ISWN II G+       +AL  F+ +  +     D  T
Sbjct: 442 YAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERT 501

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +  ++ A   +S F +G+++H  I + GY S+  V N LV MYA CGA+  A+ +F  + 
Sbjct: 502 VACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA 561

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +DLVSW  ++ G   HG+ +EA+ LF QM++  I+ D  +F+ +L AC H+G +D+G +
Sbjct: 562 SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWR 621

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +F +MR++  +EP   EHY  IV +L R G L +A  FI +M   P  +++ ALL  C++
Sbjct: 622 FFNIMRHECKIEPT-VEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 680

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H + ++A + A++V +L P +   YVL++N+    + W+    +R  +  RG+RK PG S
Sbjct: 681 HHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 740

Query: 305 WV 306
           W+
Sbjct: 741 WI 742



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 106/188 (56%), Gaps = 2/188 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + V+  +  R+ +S+ ++IAG+   G   +A+K F EM + GI  D +T+
Sbjct: 341 YSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++          EGK++H  I +     ++FV N L+ MYA CG++ +A  VFS M  
Sbjct: 401 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 460

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFE-QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +D++SWN+++ G + + Y+ EA+ LF   +++    PD  T   VL AC      DKG +
Sbjct: 461 KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE 520

Query: 185 -YFYLMRN 191
            + Y+MRN
Sbjct: 521 IHGYIMRN 528



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 7/224 (3%)

Query: 4   LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           L   R DS+   + V+  +  R+ ISWN+II G+ + G  E+ L  F +M  +GI+ID  
Sbjct: 241 LKNQRVDSA---RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLA 297

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           TI S+            G+ +H++  K  +       N L+ MY+ CG ++ A  VF  M
Sbjct: 298 TIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREM 357

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            +R +VS+ S++ G A  G + EAV+LFE+M++  I PD  T   VL+ C     +D+G 
Sbjct: 358 SDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGK 417

Query: 184 Q-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           + + ++  ND   +   +    A++ +  + G + EAE   + M
Sbjct: 418 RVHEWIKENDLGFDIFVS---NALMDMYAKCGSMQEAELVFSEM 458



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 86/179 (48%)

Query: 4   LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           L Y+ C    +   V+  V+    + WN ++      G    ++  F +M  +G+++D +
Sbjct: 137 LMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSY 196

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T + +  +   +     G+Q+H  I K G+     V N LV  Y     ++ A KVF  M
Sbjct: 197 TFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEM 256

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            ERD++SWNS++ G   +G + + + +F QM  + I+ D  T + V + C  +  I  G
Sbjct: 257 TERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 315



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALK--CFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGK 82
           R+    N  +  FC  G+ E A+K  C S       DID  T+ S++         K+GK
Sbjct: 59  RSVTDANTQLRRFCESGNLENAVKLLCVS----GKWDIDPRTLCSVLQLCADSKSLKDGK 114

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           ++   I   G+  +  + ++L  MY  CG + +A++VF  +     + WN L+   A  G
Sbjct: 115 EVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSG 174

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVV 169
               ++ LF++M  + ++ D  TF  V
Sbjct: 175 DFSGSIGLFKKMMSSGVEMDSYTFSCV 201


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 110/296 (37%), Positives = 177/296 (59%), Gaps = 4/296 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      ++++  +  ++ ISWN +I G+ ++ S ++AL  F +M+Q+ ++ +  T 
Sbjct: 309 YSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK--IGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            SI+ A   +     GK +HA I K  +G  +N  +   L+ MYA CG I  A +VF+ M
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGL-TNTSLWTSLIDMYAKCGNIEAAKQVFAGM 427

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             + L SWN+++ G A HG++  A++LF QM+    +PD  TF+ VLSAC HAG ++ G 
Sbjct: 428 KPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGR 487

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           Q F  M  D  + P + +HY  ++ LLGRAG  +EAE+ + +M   P  +++ +LL AC+
Sbjct: 488 QCFSSMVEDYDISP-KLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACR 546

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           VHGN E+   +AK + +L P +P  YVLLSN+      WDD   IRT + ++G++K
Sbjct: 547 VHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 142/267 (53%), Gaps = 4/267 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +  R+ +SWNA+IAG+   G  E+AL  F EM++A +  +  T+ +++ A  
Sbjct: 216 DARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACA 275

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
                + G  + + I   G  SN+ + N L+ MY+ CG ++ A  +F  + E+D++SWN 
Sbjct: 276 QSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNV 335

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G +H    +EA+ LF +MQ++ ++P+  TF+ +L AC + G +D G ++ +   +  
Sbjct: 336 MIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG-KWIHAYIDKK 394

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            L       +T+++ +  + G +  A+     M      S + A++S   +HG+  +A+ 
Sbjct: 395 FLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS-WNAMISGLAMHGHANMALE 453

Query: 254 SAKRVLD--LWPNDPAIYVLLSNVSKA 278
             +++ D    P+D     +LS  S A
Sbjct: 454 LFRQMRDEGFEPDDITFVGVLSACSHA 480



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 31/196 (15%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ S+   NQ  WN +I G     S   A+  +  M   G++ + +T   ++ +   +  
Sbjct: 88  LFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGA 147

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYA----------------------------- 108
            +EGKQ+H  + K+G +S+ FV   L+ MYA                             
Sbjct: 148 TQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITG 207

Query: 109 --ICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
             + G ++DA ++F  +  RD VSWN+++ G A  G   EA+  F++M++  + P+ +T 
Sbjct: 208 YTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTM 267

Query: 167 LVVLSACCHAGFIDKG 182
           + VLSAC  +G ++ G
Sbjct: 268 VTVLSACAQSGSLELG 283



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 92/194 (47%), Gaps = 11/194 (5%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC--GAINDANKVFSSMDERDLVSWNSLL 135
           F+  KQ+H+ I K G  +  F  ++L+   AI   G ++ A  +F S+++ +   WN+++
Sbjct: 45  FQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMI 104

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G +       A+  + +M    ++P+  TF  +L +C   G   +G Q + ++++    
Sbjct: 105 RGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLE 164

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
            +P     +T+++ +  + G L  AE   +  S     S + AL++   + G     +  
Sbjct: 165 SDPFV---HTSLINMYAQNGELGYAELVFSKSSLRDAVS-FTALITGYTLRG----CLDD 216

Query: 255 AKRVLDLWPNDPAI 268
           A+R+ +  P   A+
Sbjct: 217 ARRLFEEIPVRDAV 230


>gi|449522624|ref|XP_004168326.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Cucumis sativus]
          Length = 616

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 175/304 (57%), Gaps = 7/304 (2%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++ D+  D + V+  + TRN +SW  +I G+     G++A+K F  M +     D  T
Sbjct: 269 VYAKNDNLYDARKVFDEMPTRNSVSWTTMIVGYGQHEYGKEAVKLFRRMLRKDYCPDELT 328

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++ + G  SG  E  Q+H+ + K+G+++ + + N L++ Y+ CG I  A + F  + 
Sbjct: 329 FASLLSSCGFTSGASELMQVHSCLIKLGFEAFLSINNGLIYAYSKCGIIAAALQCFRLVA 388

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E DLV+W S++ G A  G  ++AV+LF++M    I+PD   FL VLSAC H GF+  GL 
Sbjct: 389 EPDLVTWTSIICGLALCGLEKDAVKLFDKMLSYGIRPDKIAFLGVLSACSHGGFVSMGLH 448

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF LM N   L P  +EH T ++ LLGRAG L++A   + SM +  GP   +A + AC+ 
Sbjct: 449 YFNLMTNQYQLVPD-SEHLTCLIDLLGRAGSLDQAFDLLKSMPKEAGPDALRAFIRACRT 507

Query: 245 HGNREIAVRSAKRVLDLW--PNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           HGN    +R AKR ++    P++P  Y L+SN+  +   W D   +R L+ +R  +K PG
Sbjct: 508 HGN----LRLAKRAMEFASEPDEPVNYSLVSNMYASEGRWSDVARMRKLINDRCEQKTPG 563

Query: 303 YSWV 306
            SWV
Sbjct: 564 LSWV 567



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 14/280 (5%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQ-------ALKCFSEMRQAG 57
            Y +C      + ++  +  RN +SWN +I G  + G G +           F +M    
Sbjct: 60  VYVKCRDLDSARTLFDEMARRNVVSWNTVICGLVDGGYGGEFKMRQHSIFLYFKKMLMGL 119

Query: 58  IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
           +D D  T   +  +  V++  + G+Q+H+ + KIG+D + FV + +V  YA CG   DA 
Sbjct: 120 VDPDGITFNGLFRSCVVLNDVESGRQLHSFVMKIGFDLDCFVGSAVVDFYAKCGLYEDAR 179

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
             FS +  RDLV WN +L  C  +  SREA+++F  MQ    K D  TF  +LS C + G
Sbjct: 180 LAFSCILYRDLVLWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGDDFTFSSLLSLCKYKG 239

Query: 178 FIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYK 236
             + G Q +  L++    L+   A   +++V +  +   L +A    + M      S   
Sbjct: 240 SGELGKQLHCLLIKQSFDLDILVA---SSLVNVYAKNDNLYDARKVFDEMPTRNSVSWTT 296

Query: 237 ALLSACQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSN 274
            ++   Q    +E AV+  +R+L  D  P++     LLS+
Sbjct: 297 MIVGYGQHEYGKE-AVKLFRRMLRKDYCPDELTFASLLSS 335



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 33/273 (12%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D +  +S +  R+ + WN ++          +A++ F  M+  G   D FT 
Sbjct: 169 YAKCGLYEDARLAFSCILYRDLVLWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGDDFTF 228

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++         + GKQ+H L+ K  +D ++ V + LV +YA    + DA KVF  M  
Sbjct: 229 SSLLSLCKYKGSGELGKQLHCLLIKQSFDLDILVASSLVNVYAKNDNLYDARKVFDEMPT 288

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----------C 174
           R+ VSW ++++G   H Y +EAV+LF +M + +  PD  TF  +LS+C            
Sbjct: 289 RNSVSWTTMIVGYGQHEYGKEAVKLFRRMLRKDYCPDELTFASLLSSCGFTSGASELMQV 348

Query: 175 HAGFIDKGLQYFYLMRND------------ASLE------PPRAEHYTAIVGLLGRAGFL 216
           H+  I  G + F  + N             A+L+       P    +T+I+  L   G  
Sbjct: 349 HSCLIKLGFEAFLSINNGLIYAYSKCGIIAAALQCFRLVAEPDLVTWTSIICGLALCGLE 408

Query: 217 NEAESFINSMSR---NPGPSVYKALLSACQVHG 246
            +A    + M      P    +  +LSAC  HG
Sbjct: 409 KDAVKLFDKMLSYGIRPDKIAFLGVLSACS-HG 440



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 7/125 (5%)

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
           +++ A   ++       +H+L+ K+G  + + VQN+L+ +Y  C  ++ A  +F  M  R
Sbjct: 21  NVLKAAAPVNSIPRDTLLHSLVVKLGLINELSVQNKLLRVYVKCRDLDSARTLFDEMARR 80

Query: 127 DLVSWNSLLLGCAHHGYSRE-------AVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           ++VSWN+++ G    GY  E           F++M    + PDG TF  +  +C     +
Sbjct: 81  NVVSWNTVICGLVDGGYGGEFKMRQHSIFLYFKKMLMGLVDPDGITFNGLFRSCVVLNDV 140

Query: 180 DKGLQ 184
           + G Q
Sbjct: 141 ESGRQ 145


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 176/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S    + V+  +  +N ISW A+I G+   G GE+A++ FSEM+  GI  + FT+
Sbjct: 326 YSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTL 385

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   ++  +EG Q H +    G    + V + LV +Y  CG+I DA+++F  M  
Sbjct: 386 GSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPF 445

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VS+ +L+ G A  G ++E + LFE+M    +KP+G TF+ VLSAC  +G ++KG  Y
Sbjct: 446 HDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSY 505

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ M+ D  +     +HYT ++ L  R+G L EAE FI  M R P    +  LLSAC++ 
Sbjct: 506 FHSMQQDHGIV-LLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLR 564

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ EI   +A+ +L   P +PA YVLL ++  +   W +   +R  M +R ++K+PG SW
Sbjct: 565 GDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSW 624

Query: 306 V 306
           +
Sbjct: 625 I 625



 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 135/255 (52%), Gaps = 10/255 (3%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           RC    + + V+ ++  R+ I+W  ++ G    G   +AL  F  MR  G+ ID +T  S
Sbjct: 227 RCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGS 286

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           I+ A G ++  +EGKQ+HA   +  YD N+FV + LV MY+ C +I  A  VF  M  ++
Sbjct: 287 ILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKN 346

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
           ++SW ++++G   +G   EAV++F +MQ   IKP+  T   V+S+C +   +++G Q F+
Sbjct: 347 IISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQ-FH 405

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN 247
            M   + L  P     +A+V L G+ G + +A    + M  +   S Y AL+S     G 
Sbjct: 406 CMALVSGLR-PYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVS-YTALVSGYAQFGK 463

Query: 248 REIAVRSAKRVLDLW 262
                  AK  +DL+
Sbjct: 464 -------AKETIDLF 471



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID-------YFTIT 66
           D   +++S+  R+ +S+NA+IAGF   G+  +A   +  + +    +D         T++
Sbjct: 94  DMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMS 153

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
            +V A   +     G+Q+H  I ++G+ +  F  + LV MYA  G I DA +VF  M  +
Sbjct: 154 GMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVK 213

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
           ++V +N+++ G        EA  +FE M    +  D  T+  +++     G   + L  F
Sbjct: 214 NVVMYNTMITGLLRCKMVEEARGVFEAM----VDRDSITWTTMVTGLTQNGLQSEALDVF 269

Query: 187 YLMRND 192
             MR +
Sbjct: 270 RRMRAE 275



 Score = 44.3 bits (103), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 33/164 (20%), Positives = 70/164 (42%), Gaps = 14/164 (8%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C S  D   ++  +   +Q+S+ A+++G+   G  ++ +  F +M   G+  + 
Sbjct: 424 VTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNG 483

Query: 63  FTITSIVGAI---GVI----SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
            T   ++ A    G++    S F   +Q H ++     D +      ++ +Y+  G + +
Sbjct: 484 VTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVL---LDDHYTC---MIDLYSRSGRLKE 537

Query: 116 ANKVFSSMDE-RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
           A +    M    D + W +LL  C   G         E + KT+
Sbjct: 538 AEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTD 581



 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           +F    D N+F +N L+   A    + D +++F+SM +RD VS+N+L+ G
Sbjct: 67  LFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAG 116


>gi|413944451|gb|AFW77100.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 678

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 178/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC      + V+  +   + ISW A++  +   G  E+ L  F +M + G+    
Sbjct: 358 ITVYGRCGDINSAETVFYLMEENDIISWTALLTCYTQNGLDEEVLLFFRKMLRKGLGSPV 417

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F ITS++ A   IS    G Q+H+   K+G D +  VQN LV +YA CG++  A K+F+S
Sbjct: 418 FCITSVLRASSSISNLAVGLQIHSRTLKLGIDDDNSVQNALVTLYANCGSVQVALKIFNS 477

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD+V+WN+LL   + HG    A+QLF+ MQ+  I PD  TF+ +LS+C   G + +G
Sbjct: 478 MSNRDIVTWNALLTSFSQHGSEVAAIQLFDLMQEEGICPDAYTFVGLLSSCSRMGLVKEG 537

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M+   +LE P+  HYT +V LL RAG   +A  FI++M   P   +++ALL++C
Sbjct: 538 CEYFNEMKEKYNLE-PKMVHYTCMVDLLARAGRFCDAMDFIDAMPYEPDQILWEALLASC 596

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN  +   +AK++L++ P+D + Y++LS++  + D WD+    RT+   +  RK  G
Sbjct: 597 KVHGNLGLGRIAAKKILEITPHDYSAYIILSSIHASVDMWDEKYWNRTVFDTQRARKDTG 656

Query: 303 YSWV 306
            SW+
Sbjct: 657 RSWI 660



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 12/222 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-----I 60
           Y R     D + ++  +  RN +SW+ +I+G  + G   +A   FS M            
Sbjct: 51  YLRRQVPADARRLFDEMPRRNLVSWSVVISGSAHHGVLAEAFALFSHMLHGAGHGSWDRP 110

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D FT+ ++V           G Q+HA + K G D +  V   LV MYA CG ++ + + F
Sbjct: 111 DSFTLGALVAGCSRARDVDAGMQVHACVAKFGVDEDDSVAAALVDMYAKCGWVDSSWRAF 170

Query: 121 SSMDERDLVSWNSL---LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           +   +R ++SW S+   L+     GY   ++ LF++M   ++ P   T+  +L       
Sbjct: 171 TLAPQRSVLSWTSMIACLVNQGSSGYYDTSLLLFKKMLALKVWPTNATYSCILKVFDTPD 230

Query: 178 FIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218
            +  G+Q +  L++    ++       TA++ + GR G ++E
Sbjct: 231 LLSVGMQLHGCLLKMGTEVDTALG---TALMTMYGRCGGVDE 269



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 105/253 (41%), Gaps = 14/253 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    +   +   +R  + +S  A++  +   G   +A+  F EM    + ID   +
Sbjct: 261 YGRCGGVDEIPRLACRIR-HDALSRTALLGAYARTGYNAEAIGVFKEMIMKNMAIDQSAM 319

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T ++         +  +Q+H    K  +  +  + N  + +Y  CG IN A  VF  M+E
Sbjct: 320 TGMLQVCSSFGQLRMVRQVHCYALKTFFKLDTLLLNATITVYGRCGDINSAETVFYLMEE 379

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D++SW +LL     +G   E +  F +M +  +         VL A      +  GLQ 
Sbjct: 380 NDIISWTALLTCYTQNGLDEEVLLFFRKMLRKGLGSPVFCITSVLRASSSISNLAVGLQI 439

Query: 186 FYL-----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
                   + +D S++        A+V L    G +  A    NSMS N     + ALL+
Sbjct: 440 HSRTLKLGIDDDNSVQ-------NALVTLYANCGSVQVALKIFNSMS-NRDIVTWNALLT 491

Query: 241 ACQVHGNREIAVR 253
           +   HG+   A++
Sbjct: 492 SFSQHGSEVAAIQ 504



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 5/106 (4%)

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +H +  K+G   + F+ N L++ Y       DA ++F  M  R+LVSW+ ++ G AHHG 
Sbjct: 28  VHGVAIKLGCIVSTFLCNNLLYAYLRRQVPADARRLFDEMPRRNLVSWSVVISGSAHHGV 87

Query: 144 SREAVQLFEQM-----QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             EA  LF  M       +  +PD  T   +++ C  A  +D G+Q
Sbjct: 88  LAEAFALFSHMLHGAGHGSWDRPDSFTLGALVAGCSRARDVDAGMQ 133


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 179/303 (59%), Gaps = 4/303 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      +  +     +N + W+A+IAG+      +++LK F EM + G+     T+
Sbjct: 434 YAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTL 493

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIG--YDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            S++ A G ++    G  +H   F +G     +V ++N +V MYA CG+I+ A +VFS+M
Sbjct: 494 VSVLSACGQLTCLNLGDWIHQY-FVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTM 552

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            ER+L+SWN+++ G A +G +++A+ +F+QM+    +P+  TF+ +L+AC H G I +G 
Sbjct: 553 PERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGR 612

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           +YF  M     ++P R  HY  +V LLGR G L EA   I +M   P  + + ALL+AC+
Sbjct: 613 EYFDNMERKYGIKPERG-HYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACR 671

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
           +HGN E+A  SA  +L L P D  IYVLL+N       W D   +R+LM ++G++K PGY
Sbjct: 672 MHGNVELARLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGY 731

Query: 304 SWV 306
           S +
Sbjct: 732 SLI 734



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 89/167 (53%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
             +++ V   N   WN +I G+ N      A   F  M Q  +++D  +    + A    
Sbjct: 211 HTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQF 270

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               EG+ ++ +++K+G+D  + V+N L+  YA  G + +A +VF    ++D+V+W +++
Sbjct: 271 ETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMI 330

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            G A H  S EA+++FE M  + ++P+  T + V+SAC   G ++ G
Sbjct: 331 DGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMG 377



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 126/297 (42%), Gaps = 41/297 (13%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+     ++ ++W  +I G+      E+A++ F  M  + ++ +  T+ ++V A   +
Sbjct: 312 RQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDM 371

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + GK++H  + +     ++ + N L+ MY  C  + DA ++F  M  +D+ SW S++
Sbjct: 372 GNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMV 431

Query: 136 LGCAH--------------------------HGYS-----REAVQLFEQMQKTEIKPDGT 164
            G A                            GYS     +E+++LF +M +  + P   
Sbjct: 432 NGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEH 491

Query: 165 TFLVVLSACCHAGFIDKG---LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES 221
           T + VLSAC     ++ G    QYF +      + P       AIV +  + G ++ A  
Sbjct: 492 TLVSVLSACGQLTCLNLGDWIHQYFVV----GKIIPLSVTLENAIVDMYAKCGSIDAATE 547

Query: 222 FINSMSRNPGPSVYKALLSACQVHG--NREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276
             ++M      S +  +++    +G   + I V    R +   PN+     LL+  S
Sbjct: 548 VFSTMPERNLIS-WNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACS 603


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 174/304 (57%), Gaps = 2/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    D ++V+  +  ++ + WNA+  G+      E+ALK +S ++ +    + 
Sbjct: 382 IDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNE 441

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  +++ A   ++  + G+Q H  + K+G D   FV N LV MYA CG+I +A K+F+S
Sbjct: 442 FTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNS 501

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              RD+V WNS++   A HG + EA+ +F +M K  I+P+  TF+ VLSAC HAG ++ G
Sbjct: 502 SIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDG 561

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L +F  M        P  EHY  +V LLGR+G L EA+ FI  M   P   V+++LLSAC
Sbjct: 562 LNHFNSMPGFGI--KPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSAC 619

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++ GN E+   +A+  +   P D   Y+LLSN+  +   W D   +R  M +  + K+PG
Sbjct: 620 RIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPG 679

Query: 303 YSWV 306
            SW+
Sbjct: 680 RSWI 683



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 140/300 (46%), Gaps = 10/300 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++ +   D + V+  +  +N IS+NA+I G+ +     +AL+ F EMR         T 
Sbjct: 284 YAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTF 343

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++G    +   +  KQ+H LI K G   ++F  + L+ +Y+ C  + DA  VF  M+E
Sbjct: 344 VSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNE 403

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+V WN++  G   H  + EA++L+  +Q +  KP+  TF  +++A  +   +  G Q+
Sbjct: 404 KDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQF 463

Query: 186 F-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
              L++      P       A+V +  + G + EA    NS S       + +++S    
Sbjct: 464 HNQLVKMGLDFCPFVT---NALVDMYAKCGSIEEARKMFNS-SIWRDVVCWNSMISTHAQ 519

Query: 245 HGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           HG  E A+   + ++   + PN      +LS  S A    D      ++    G   KPG
Sbjct: 520 HGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSM---PGFGIKPG 576



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 93/165 (56%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+     + ++  +  +N ISW  +I+G+       +A+K F EM + G   D F  
Sbjct: 183 YTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFAC 242

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ + G +   ++G+Q+HA   K   +SN FV+N L+ MYA    + DA KVF  M E
Sbjct: 243 TSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAE 302

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           ++++S+N+++ G +      EA++LF +M+     P   TF+ +L
Sbjct: 303 QNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLL 347



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 140/283 (49%), Gaps = 8/283 (2%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  +  ++W  IIAG+   G    +L+ F++MR+  +  D + ++S++ A  ++  
Sbjct: 94  VFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEF 153

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + GKQ+HA + + G + +V V N L+  Y  C  +    K+F  M  ++++SW +++ G
Sbjct: 154 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 213

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLE 196
              + +  EA++LF +M +   KPDG     VL++C     +++G Q + Y ++  A+LE
Sbjct: 214 YMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIK--ANLE 271

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS--ACQVHGNREIAVRS 254
                    ++ +  ++  L +A+   + M+     S Y A++   + Q   +  + +  
Sbjct: 272 SNEFVK-NGLIDMYAKSNLLXDAKKVFDVMAEQNVIS-YNAMIEGYSSQEKLSEALELFH 329

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
             RV  L+P     +V L  VS +    + +  I  L+   G+
Sbjct: 330 EMRV-RLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGV 371



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 41  GSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFV 99
           G  E+AL  F ++ R++G   + F + S++ A   +   ++G Q+H  + + G+D +V+V
Sbjct: 15  GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 74

Query: 100 QNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
              L+  Y+  G I  A  VF  + E+  V+W +++ G    G S  +++LF QM++T +
Sbjct: 75  GTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNV 134

Query: 160 KPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLE 196
            PD      VLSAC    F++ G Q + Y++R    ++
Sbjct: 135 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMD 172


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 175/302 (57%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           +Y +C    D   V+      + +++ ++I  +   G GE+ALK +  M+   I  D F 
Sbjct: 434 SYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFI 493

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +S+  A   +S +++GKQ+H  + K G  S+VF  N LV MYA CG+I+DA+ +F+ + 
Sbjct: 494 FSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEIS 553

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            R +VSW++++ G A HG+ R+A+QLF QM K  I P+  T + VLSAC HAG + +  +
Sbjct: 554 WRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARR 613

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +F LM     + P + EHY  +V +LGR G L+EA   +  M      +V+ ALL A ++
Sbjct: 614 FFGLMEKLFGITPTQ-EHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARI 672

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N E+   +A+ +L L P     ++LL+N+  +T  WD+   +R  M N  ++K+PG S
Sbjct: 673 HKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMS 732

Query: 305 WV 306
           W+
Sbjct: 733 WI 734



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 140/277 (50%), Gaps = 9/277 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D + V+  +  ++ I WN+II+G+ N G   +A+  F+ M + G++ +  T+
Sbjct: 334 YSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTL 393

Query: 66  TSIVGAIG--VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           ++I+ +      +GF E  Q+H +  K GY  + +V N L+  Y  C  + DA KVF   
Sbjct: 394 STILKSTAGSQANGFCE--QVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVC 451

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
              DLV++ S++   + +G   EA++++ +MQ  +IKPD   F  + +AC +    ++G 
Sbjct: 452 PAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGK 511

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           Q    +     L    A +  ++V +  + G +++A    N +S   G   + A++    
Sbjct: 512 QIHVHVLKCGLLSDVFAGN--SLVNMYAKCGSIDDASCIFNEISWR-GIVSWSAMIGGLA 568

Query: 244 VHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
            HG+   A++   ++L   + PN   +  +LS  + A
Sbjct: 569 QHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHA 605



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 84/155 (54%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +   + +SWNA+IAG       + ALK   +M    +    FT++S + A   I  
Sbjct: 245 VFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGL 304

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K G+Q+H+ + K+  + + FV   L+ MY+ CG + DA  VF  M  +D++ WNS++ G
Sbjct: 305 VKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISG 364

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            ++ GY  EA+ LF  M K  ++ + TT   +L +
Sbjct: 365 YSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKS 399



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 109/262 (41%), Gaps = 44/262 (16%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + +       + +SW+A+I+G+   G GE+AL  + EM   G   + FT 
Sbjct: 92  YSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTF 151

Query: 66  TSIVGAIGVISGFKEGKQMHAL-------------------------------------- 87
           +S++    +    + GKQ+H +                                      
Sbjct: 152 SSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVH 211

Query: 88  --IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
             + K+GYDS+ F  N L+ MYA  G    A  VF  + + D+VSWN+++ GC  H  + 
Sbjct: 212 GYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKND 271

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYT 204
            A++L  +M    + P   T    L AC   G +  G Q +  LM+ D     P +    
Sbjct: 272 LALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDME---PDSFVGV 328

Query: 205 AIVGLLGRAGFLNEAESFINSM 226
            ++ +  + G L +A    + M
Sbjct: 329 GLIDMYSKCGLLQDARMVFDLM 350



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 38/81 (46%)

Query: 104 VFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG 163
           V +Y+ C     A K+     E DLVSW++L+ G   +G   EA+  + +M     K + 
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 164 TTFLVVLSACCHAGFIDKGLQ 184
            TF  VL  C     ++ G Q
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQ 169


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 181/301 (60%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++   + D +  ++ ++  + + W ++IAG+   G  E AL  +  M+  GI  +  T+
Sbjct: 358 YAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTM 417

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   ++ F +G+Q+HA   K G    V + + L  MYA CG + + N VF  M E
Sbjct: 418 ASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPE 477

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD++SWN+++ G + +GY +EA++LFE+M++ + KPD  TF+ VLSAC H G +D G  Y
Sbjct: 478 RDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLY 537

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M ++  L  P+ EHY  +V +L RAG L EA+ FI S + + G  +++ LL AC+ +
Sbjct: 538 FRMMFDEFGL-LPKVEHYACMVDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLGACRNY 596

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   + +++++L   + + YVLLS +  A    +D   +R++M  RG+ K+PG SW
Sbjct: 597 RNYELGAYAGEKLMELGSQESSAYVLLSGIYTALGRPEDVERVRSMMKVRGVSKEPGCSW 656

Query: 306 V 306
           +
Sbjct: 657 I 657



 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 100/182 (54%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++C S  D   V+     +N I+W+A+I G+   G   +ALK FS M  AGI+   
Sbjct: 254 VTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSE 313

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+  ++ A       +EGKQ+H  + K+G++S +++   LV MYA  G   DA K F+ 
Sbjct: 314 FTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNY 373

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + + DLV W S++ G   +G + +A+ L+ +MQ   I P+  T   VL AC +    D+G
Sbjct: 374 LQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQG 433

Query: 183 LQ 184
            Q
Sbjct: 434 RQ 435



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 152/301 (50%), Gaps = 12/301 (3%)

Query: 9   CDSSLDFQ--NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT 66
           C + L F+   V+  +  RN+++W  +I+G+       +A + F  MR+   D++ F  T
Sbjct: 157 CKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFT 216

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
           S++ A+ V      GKQ+H L  K G    + + N LV MYA CG+++D+ +VF   +++
Sbjct: 217 SVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDK 276

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-Y 185
           + ++W++++ G A  G S +A++LF +M    I P   T + VL+AC  A  +++G Q +
Sbjct: 277 NSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVH 336

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            YL++        +    TA+V +  ++G   +A    N + + P   ++ ++++    +
Sbjct: 337 NYLLKLGFE---SQLYIMTALVDMYAKSGVTEDARKGFNYL-QQPDLVLWTSMIAGYVQN 392

Query: 246 GNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKATDCWDDAGDI--RTLMYNRGIRKKP 301
           G  E A+    R+    + PN+  +  +L   S     +D    I  RT+ Y  G+    
Sbjct: 393 GENEDALSLYCRMQMEGILPNELTMASVLKACSNLA-AFDQGRQIHARTIKYGLGLEVTI 451

Query: 302 G 302
           G
Sbjct: 452 G 452



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 129/277 (46%), Gaps = 6/277 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQA--LKCFSEMRQAGIDIDYF 63
           Y++C      + V+  +  ++ ISWN +I G+   G    +  ++ F  MR   I  +  
Sbjct: 53  YAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAH 112

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T + I  A   +S    G+Q HA+  K+    +VFV + L+ MY   G + +A +VF  M
Sbjct: 113 TFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRM 172

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            ER+ V+W +++ G A    + EA ++FE M++ E   +   F  VLSA     F+D G 
Sbjct: 173 PERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGK 232

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           Q   L      L         A+V +  + G L+++   +  MS +     + A+++   
Sbjct: 233 QIHCLAVKTGLL--VFLSILNALVTMYAKCGSLDDSLQ-VFEMSNDKNSITWSAMITGYA 289

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATD 280
             G+   A++   R +     +P+ + L+  ++  +D
Sbjct: 290 QSGDSHKALKLFSR-MHFAGINPSEFTLVGVLNACSD 325



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 3/110 (2%)

Query: 78  FKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            ++G+ +HA I K+   S+ +++ N L+  YA C  +  A  VF  +  +D++SWN L+ 
Sbjct: 23  LQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLIN 82

Query: 137 GCAHHGYSREA--VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           G +  G +  +  ++LF++M+   I P+  TF  + +A  +   I  G Q
Sbjct: 83  GYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQ 132


>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 649

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 177/292 (60%), Gaps = 3/292 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++ +  +  +N ISWN IIAG+      + A+K FSEM+  G   D  T++S++     +
Sbjct: 359 KDFFERMPHKNLISWNTIIAGYEKNEDYKGAIKLFSEMQLEGERPDKHTLSSVISVSTGL 418

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD-ERDLVSWNSL 134
                GKQ+H L+ K     +  + N L+ MY+ CGAI DA  VF+ +   +D+++WN++
Sbjct: 419 VDLYLGKQLHQLVTKTVLPDSP-INNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAM 477

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + G A HG + EA++LF+ M++ +I P   TF+ VL+AC HAG +++G + F  M ND  
Sbjct: 478 IGGYASHGSAAEALELFKLMKRLKIHPTYITFISVLNACAHAGLVEEGWRQFKSMINDYG 537

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           +EP R EH+ ++V +LGR G L EA   IN+M   P  +V+ ALL AC+VH N E+A+ +
Sbjct: 538 IEP-RVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAVWGALLGACRVHNNVELALVA 596

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           A  ++ L P   A YVLL N+      WDDA  +R LM  + ++K+ GYSWV
Sbjct: 597 ADALIRLEPESSAPYVLLYNMYANLGQWDDAESVRVLMEEKNVKKQAGYSWV 648



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 98/227 (43%), Gaps = 19/227 (8%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN +SWN+++  +   G    A + F  M    ++ D  +  +++     IS  +E  ++
Sbjct: 275 RNVVSWNSMMMCYVKAGDIVFARELFDRM----VERDNCSWNTLISCYVQISNMEEASKL 330

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
               F+     +V   N ++   A  G +N A   F  M  ++L+SWN+++ G   +   
Sbjct: 331 ----FREMPSPDVLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWNTIIAGYEKNEDY 386

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP----PRA 200
           + A++LF +MQ    +PD  T   V+S       +  GL   YL +    L      P +
Sbjct: 387 KGAIKLFSEMQLEGERPDKHTLSSVIS-------VSTGLVDLYLGKQLHQLVTKTVLPDS 439

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN 247
               +++ +  R G + +A +  N +        + A++     HG+
Sbjct: 440 PINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGS 486



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 16/146 (10%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G I++A  +F SM  RD V+WNS++ G         A QLF++M + ++     ++ +++
Sbjct: 52  GRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMPRRDV----VSWNLIV 107

Query: 171 S---ACCHAGFIDKGLQYFYLMRNDASLEPPR-AEHYTAIVGLLGRAGFLNEAESFINSM 226
           S   +CC + F+++G + F LM       P R    +  ++    + G +++A    N+M
Sbjct: 108 SGYFSCCGSRFVEEGRRLFELM-------PQRDCVSWNTVISGYAKNGRMDQALKLFNAM 160

Query: 227 SRNPGPSVYKALLSACQVHGNREIAV 252
             +   S Y A+++   ++G+ E AV
Sbjct: 161 PEHNAVS-YNAVITGFLLNGDVESAV 185



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 124/296 (41%), Gaps = 27/296 (9%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++ S++ R+ ++WN++I+G+       +A + F EM +  +      ++      G  
Sbjct: 58  RTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMPRRDVVSWNLIVSGYFSCCG-- 115

Query: 76  SGF-KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           S F +EG+++    F++    +    N ++  YA  G ++ A K+F++M E + VS+N++
Sbjct: 116 SRFVEEGRRL----FELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPEHNAVSYNAV 171

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + G   +G    AV  F  M +     D T+   ++S     G +D          N   
Sbjct: 172 ITGFLLNGDVESAVGFFRTMPEH----DSTSLCALISGLVRNGELDLAAGILRECGNGDD 227

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-----NPGPSVYKA------LLSACQ 243
            +      Y  ++   G+ G + EA    + +       N G   ++        +  C 
Sbjct: 228 GKDDLVHAYNTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCY 287

Query: 244 VHGN-----REIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294
           V        RE+  R  +R    W    + YV +SN+ +A+  + +      L +N
Sbjct: 288 VKAGDIVFARELFDRMVERDNCSWNTLISCYVQISNMEEASKLFREMPSPDVLSWN 343


>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 108/292 (36%), Positives = 170/292 (58%), Gaps = 2/292 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++  +  RN +SW  ++ G       E AL+ F+ M   GI  +  T    V A   +
Sbjct: 277 QELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNL 336

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +G  EG+Q+H +I K  +  + F+++ L+ +YA CG I  A KVF    E+D++SWN ++
Sbjct: 337 AGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVISWNGMI 396

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
              AHHG   EA+ L+E+MQ+   KP+  T++ +LSAC H+G +D+GL+ F  M  D S+
Sbjct: 397 AAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKSI 456

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS-VYKALLSACQVHGNREIAVRS 254
              R EHY+ ++ L  RAG L++A+  IN +   P  S V+ ALL  C  HGN  I   +
Sbjct: 457 -AVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHGNESIGDLA 515

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           A+ +L+  P++   Y LLSN+  +   W +A  IR+ M +RG++K+PG SW+
Sbjct: 516 ARNLLEAEPDNAGTYTLLSNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWI 567



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 83/176 (47%), Gaps = 12/176 (6%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN +SW  +I+G    GS ++A   F  M +           ++V    +I
Sbjct: 184 RRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMPE----------RNVVSWNAMI 233

Query: 76  SGFKEGKQM-HAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           SG+    ++  AL +F    + +V   N ++  +     +  A ++F  M +R++VSW +
Sbjct: 234 SGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRNVVSWTT 293

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           ++ GC     S  A+Q+F  M    I+P+  TFL  + A  +   + +G Q   ++
Sbjct: 294 MMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMI 349



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 19/177 (10%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQA--LKCFSEMRQAGIDIDYFTITSIVGA 71
           D + ++     R+ +SW A++A +   G   +A  L    + R+           ++V  
Sbjct: 57  DARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASALLHRPDARR-----------NVVTW 105

Query: 72  IGVISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
             ++SG+   +++     +F    + NV   N ++  YA  G +  A  +F  M  RD  
Sbjct: 106 TALLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMPVRDAG 165

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
           SWN LL      G   EA +LFE+M +  +     ++  ++S    +G  D+    F
Sbjct: 166 SWNILLAALVRSGTMDEARRLFERMPERNV----MSWTTMISGLARSGSADEARALF 218



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 12/156 (7%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDIDYF 63
           Y+R     + + ++  +  RN +SWN ++  + + G    A   F  M  R AG      
Sbjct: 112 YARARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMPVRDAG------ 165

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           +   ++ A+       E ++    +F+   + NV     ++   A  G+ ++A  +F  M
Sbjct: 166 SWNILLAALVRSGTMDEARR----LFERMPERNVMSWTTMISGLARSGSADEARALFDGM 221

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
            ER++VSWN+++ G A +    EA+ LF  M + ++
Sbjct: 222 PERNVVSWNAMISGYARNLRIDEALDLFMNMPERDV 257



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 82/175 (46%), Gaps = 17/175 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM---RQAGIDIDY 62
           Y++C      + V+     ++ ISWN +IA + + G+G +A+  + +M   R    D+ Y
Sbjct: 368 YAKCGEIRLARKVFDLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTY 427

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR----LVFMYAICGAINDANK 118
             + S     G++    EG ++   + K   D ++ V++     L+ + +  G ++DA +
Sbjct: 428 VGLLSACSHSGLVD---EGLRIFEYMAK---DKSIAVRDEHYSCLIDLCSRAGRLDDAKR 481

Query: 119 VFSSMDERDLVS--WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           + + +  +   S  W++LL GC  HG   E++         E +PD      +LS
Sbjct: 482 LINGLKLKPTSSTVWSALLGGCNAHG--NESIGDLAARNLLEAEPDNAGTYTLLS 534



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 76/168 (45%), Gaps = 18/168 (10%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI---VGAIGVISGFKEG 81
           RN ++W A+++G+      ++A   F  M +  + + + T+       G +G      +G
Sbjct: 100 RNVVTWTALLSGYARARRVDEARALFDRMPERNV-VSWNTMLEAYASAGRMGAACALFDG 158

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
             +         D+  +  N L+      G +++A ++F  M ER+++SW +++ G A  
Sbjct: 159 MPVR--------DAGSW--NILLAALVRSGTMDEARRLFERMPERNVMSWTTMISGLARS 208

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           G + EA  LF+ M +  +     ++  ++S       ID+ L  F  M
Sbjct: 209 GSADEARALFDGMPERNV----VSWNAMISGYARNLRIDEALDLFMNM 252



 Score = 44.7 bits (104), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 3/104 (2%)

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
           A +F     S+V   NR +   A  G + DA ++F    +RD+VSW +++   A  G   
Sbjct: 28  AAVFSTDAFSHVQDPNRRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLH 87

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           EA  L   + + + + +  T+  +LS    A  +D+    F  M
Sbjct: 88  EASAL---LHRPDARRNVVTWTALLSGYARARRVDEARALFDRM 128


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 181/303 (59%), Gaps = 2/303 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C S  D   ++ S+  +N ++W++++AG+   G  E+AL  F   +  G D D F 
Sbjct: 188 VYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFM 247

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I+S V A   ++   EGKQ+HA+  K G+ SN++V + L+ MYA CG I +A  VF  + 
Sbjct: 248 ISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVL 307

Query: 125 E-RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           E R +V WN+++ G A H  + EA+ LFE+MQ+    PD  T++ VL+AC H G  ++G 
Sbjct: 308 EVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQ 367

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           +YF LM    +L P    HY+ ++ +LGRAG +++A   I  M  N   S++ +LL++C+
Sbjct: 368 KYFDLMVRQHNLSPS-VLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCK 426

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
           ++GN E A  +AK + ++ PN+   ++LL+N+  A   WD+    R L+    +RK+ G 
Sbjct: 427 IYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWDEVARARKLLRETDVRKERGT 486

Query: 304 SWV 306
           SW+
Sbjct: 487 SWI 489



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 89/179 (49%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      +  ++ +  ++ +SWN +I          +ALK   +M++ G   + FTI
Sbjct: 88  YSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTI 147

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++          E  Q+HA   K   DSN FV   L+ +YA C +I DA+++F SM E
Sbjct: 148 SSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPE 207

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++ V+W+S++ G   +G+  EA+ +F   Q      D       +SAC     + +G Q
Sbjct: 208 KNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQ 266



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 7/100 (7%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G+  HA I +IG + ++   N L+ MY+ C  ++ A K F+ M  + LVSWN+++     
Sbjct: 62  GRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQ 121

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTF--LVVLSACCHAGF 178
           +   REA++L  QMQ+     +GT F    + S  C+  F
Sbjct: 122 NAEDREALKLLIQMQR-----EGTPFNEFTISSVLCNCAF 156


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 109/292 (37%), Positives = 171/292 (58%), Gaps = 2/292 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN ++W  ++ G+      E AL  FS M  AG   +  T    + A   +
Sbjct: 280 RELFDEMPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDL 339

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +   EGKQ+H +I K  +  + FV++ L+ +YA CG I  A K+F    E+DL+SWN ++
Sbjct: 340 AALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSREKDLISWNGII 399

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
              AHHG   EA+ L+E+MQ+   +P+  T++V+LSAC H+G +D+GL+ F  M ND S+
Sbjct: 400 AAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSI 459

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGP-SVYKALLSACQVHGNREIAVRS 254
              R EHYT ++ L  RAG L++A+  I+ +   P   SV+ ALL  C  HGN  I   +
Sbjct: 460 -AVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLA 518

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           A+ +L   P++   Y LLSN+  +   W +A +IR+ M NRG++K+PG SW+
Sbjct: 519 ARNLLQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWI 570



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 19/197 (9%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           N +IA     G    A K F        D D  + T++V A       ++ ++   L  +
Sbjct: 46  NRLIAELAAAGRVWDARKLF----DGTPDWDVVSWTALVSAYARRGMLRDARE---LFDR 98

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
                NV     L+  YA    +++A  +F  M +R++VSWN++L   A  G   +A  L
Sbjct: 99  PDARRNVVTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACAL 158

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR-AEHYTAIVGL 209
           F++M       D  ++ ++L+    +G +DK  + F  M       P R    +T +V  
Sbjct: 159 FDRMPVR----DAGSWNILLATLVRSGSVDKARELFGRM-------PERDVMAWTTMVDG 207

Query: 210 LGRAGFLNEAESFINSM 226
           + R+G ++EA    +SM
Sbjct: 208 VARSGKVDEARVLFDSM 224



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDIDYF 63
           Y+R     + + ++  +  RN +SWN ++  +   G    A   F  M  R AG    + 
Sbjct: 115 YARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRMPVRDAG---SWN 171

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            + + +   G +   +E       +F    + +V     +V   A  G +++A  +F SM
Sbjct: 172 ILLATLVRSGSVDKARE-------LFGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSM 224

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
            ER++VSWN+++ G   +    EA+ LF +M + +I
Sbjct: 225 PERNVVSWNAMISGYTRNHRIDEALDLFMKMPERDI 260


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 181/301 (60%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C+   D   V++S+   + ++W + I G    G  E AL  F EM +  I  ++FT+
Sbjct: 248 YSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSISPNHFTL 307

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+ A   ++  + G+Q+HA+  K+G D N FV   L+ +Y  CG +  A  VF S+ E
Sbjct: 308 SSILHACSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTE 367

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VS N+++   A +G+  EA++LFE+++K  ++P+  TF+ +L AC +AG +++G Q 
Sbjct: 368 LDIVSINTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLACNNAGLVEEGCQI 427

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F L+RN+ S+E  R +HYT ++ LLGRA    EA   I    +NP    ++ LL+AC++H
Sbjct: 428 FSLIRNNHSIELTR-DHYTCMIDLLGRAKRFEEATMLIEE-GKNPDVIQWRTLLNACKIH 485

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G  E+A +  K++LD  P D   ++LL+N+  +   WD+  ++++   +  ++K P  SW
Sbjct: 486 GEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSW 545

Query: 306 V 306
           V
Sbjct: 546 V 546



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 1/178 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    + + ++  +  R+ ++WN++I+   + G  ++A++ +S M   G+  D +T 
Sbjct: 45  YIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTF 104

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYD-SNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++I  A   +   +EG++ H L   +G++ S+ FV   +V MYA  G + DA  VF  + 
Sbjct: 105 SAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVL 164

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++D+V + +L++G   HG   EA+++FE M  + IKP+  T   VL +C + G +  G
Sbjct: 165 DKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNG 222



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 126/260 (48%), Gaps = 3/260 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     D + V+  V  ++ + + A+I G+   G   +AL+ F +M  + I  + +T+
Sbjct: 147 YAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRIKPNEYTL 206

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ + G +     GK +H L+ K G +S V  Q  L+ MY+ C  + D+ KVF+S+  
Sbjct: 207 ASVLVSCGNLGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAY 266

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
              V+W S ++G   +G    A+ +F +M +  I P+  T   +L AC     ++ G Q 
Sbjct: 267 ASHVTWTSFIVGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAMLEAGEQ- 325

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV- 244
            + +     ++  +     A++ L G+ G + +A S  +S++     S+   + +  Q  
Sbjct: 326 IHAVTVKLGVDGNKFVD-AALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQNG 384

Query: 245 HGNREIAVRSAKRVLDLWPN 264
            G+  + +    + L L PN
Sbjct: 385 FGHEALELFERLKKLGLEPN 404



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 3/165 (1%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           K +H  I K G   + F  ++L+  Y  C  I +A K+F  M  R +V+WNS++      
Sbjct: 21  KSLHTHILKSGSLFSFF-GHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSR 79

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAE 201
           G ++EA++L+  M    + PD  TF  +  A    G   +G Q  + +      E     
Sbjct: 80  GKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREG-QKAHGLAVVLGFEVSDGF 138

Query: 202 HYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
             T IV +  + G + +A  F+     +    ++ AL+     HG
Sbjct: 139 VATGIVDMYAKFGKMKDAR-FVFDRVLDKDVVLFTALIVGYNQHG 182


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 114/295 (38%), Positives = 175/295 (59%), Gaps = 5/295 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYFTITSIVGAIG 73
           ++++  +  RN +SW A+I+G+   G  EQAL  F EM Q G ++  ++ TI S++ A  
Sbjct: 193 EDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACA 252

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDLVSW 131
             +  + G+++H     IG   N  VQ  L  MYA C ++ +A   F  + +  ++L++W
Sbjct: 253 QSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAW 312

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
           N+++   A HG   EAV +FE M +  ++PD  TF+ +LS C H+G ID GL +F  M  
Sbjct: 313 NTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGT 372

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
             S+EP R EHY  +V LLGRAG L EA+  I+ M    GPSV+ ALL+AC+ H N EIA
Sbjct: 373 IHSVEP-RVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIA 431

Query: 252 VRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             +A+R+  L P++   YVLLSN+      W++   +R L+  +G++K PG SW+
Sbjct: 432 ELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWI 486



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 7/164 (4%)

Query: 47  LKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFM 106
           L+ ++ M   G+  D FT+  ++ +   +S    G+ +H    ++G + + +V   L+ M
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 107 YAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
           Y  CG I DA K+F  M  RD+ SWN+L+ G    G    A  LFE+M+   I     ++
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNI----VSW 207

Query: 167 LVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLL 210
             ++S     GF ++ L  F  M  D S   P   ++  IV +L
Sbjct: 208 TAMISGYTQNGFAEQALGLFDEMLQDGSEMKP---NWVTIVSVL 248


>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
 gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
          Length = 507

 Score =  217 bits (552), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 177/304 (58%), Gaps = 3/304 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYF 63
            Y+RC    D +++++ +  RN ISW A+++G+   G  E+A++ F EM +  G+  +  
Sbjct: 160 AYARCGRVDDAESLFAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGVRPNEV 219

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T++S++ A   +     G+++       G  +NV+V N LV MYA CG+I  A  VF  +
Sbjct: 220 TVSSVLPACAAVGALALGRKVERYARGRGMLTNVYVANALVEMYAKCGSIRRAWMVFRGI 279

Query: 124 -DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             +RDL SWNS+++  A HG  RE + LF +++ T  KPDG TF+ V+ AC H G +D+G
Sbjct: 280 GKQRDLCSWNSMIMAFAVHGLWREVLGLFHKLRMTGAKPDGITFVGVILACTHGGLVDEG 339

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
              F  MR +  L+P R EHY  +V LLGRAG L EA+S I SM   P   ++ ALL AC
Sbjct: 340 KLLFNSMREEFGLKP-RIEHYGCMVDLLGRAGLLKEADSLIASMPMEPDAVIWGALLGAC 398

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
             HGN E+A  + ++++ L P + A  V+LSN+  +   WD    +  L+  +  +K  G
Sbjct: 399 SFHGNLELAEVAVEKLMRLEPQNTANLVILSNIYASHGKWDGVAQVWKLLKEKDHKKSAG 458

Query: 303 YSWV 306
           YS++
Sbjct: 459 YSFI 462



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 3/153 (1%)

Query: 95  SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
           S+   +N L+  YA CG ++DA  +F+ M +R+++SW +++ G A +G   EAV+ F +M
Sbjct: 149 SDAAARNALLSAYARCGRVDDAESLFAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLEM 208

Query: 155 -QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA 213
            +   ++P+  T   VL AC   G +  G +     R    L         A+V +  + 
Sbjct: 209 WEGCGVRPNEVTVSSVLPACAAVGALALGRKVERYARGRGMLTNVYVA--NALVEMYAKC 266

Query: 214 GFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
           G +  A      + +      + +++ A  VHG
Sbjct: 267 GSIRRAWMVFRGIGKQRDLCSWNSMIMAFAVHG 299


>gi|255571546|ref|XP_002526719.1| DNA-damage-inducible protein f, putative [Ricinus communis]
 gi|223533908|gb|EEF35633.1| DNA-damage-inducible protein f, putative [Ricinus communis]
          Length = 906

 Score =  217 bits (552), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 175/301 (58%), Gaps = 13/301 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D + V+  +  RN +SW+ +I G+  +G  E+AL+ F E     +D++ F  
Sbjct: 55  YAKCGELSDARKVFDEMPERNVVSWSGMIYGYAQVGEDEEALRLFKEALLEDLDVNDFIY 114

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++   G  +  + G+Q+  L  K  YDS+ FV + L+  Y+ CG +  A KVF  +  
Sbjct: 115 SSVIRVCGDSTLLELGRQIQGLCLKTSYDSSSFVGSSLISFYSRCGVVEAAFKVFDEVSI 174

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++L  WN++L+ CA H ++ +   LF++M+   +KP+  TFL +L AC HAG I+KG +Y
Sbjct: 175 KNLGMWNAMLIACAQHAHTEKVFYLFDKMKNVGMKPNFITFLCLLYACSHAGLIEKGQRY 234

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+ +  +EP  A+HY  +V LLGRAG L EA + I  M  +P  SV+ A L+ C++H
Sbjct: 235 FERMK-EYGIEPG-AQHYATLVDLLGRAGKLQEALAIIKGMPIDPTESVWGAFLTGCRLH 292

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+A  +A R+ +L P           VS A   + DA   R ++ +RG++K+ G SW
Sbjct: 293 GNTELAAFAADRIFELGP-----------VSSAAQRYGDAAKARKMLRDRGVKKETGLSW 341

Query: 306 V 306
           +
Sbjct: 342 I 342



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 5/170 (2%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK +H  + K GY+ NVFV +  V MYA CG ++DA KVF  M ER++VSW+ ++ G A 
Sbjct: 29  GKSVHGFVIKTGYNFNVFVGSSTVDMYAKCGELSDARKVFDEMPERNVVSWSGMIYGYAQ 88

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRA 200
            G   EA++LF++    ++  +   +  V+  C  +  ++ G Q   L    +       
Sbjct: 89  VGEDEEALRLFKEALLEDLDVNDFIYSSVIRVCGDSTLLELGRQIQGLCLKTSYDSSSFV 148

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMS-RNPGPSVYKALLSACQVHGNRE 249
              ++++    R G +  A    + +S +N G  ++ A+L AC  H + E
Sbjct: 149 G--SSLISFYSRCGVVEAAFKVFDEVSIKNLG--MWNAMLIACAQHAHTE 194


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 115/289 (39%), Positives = 166/289 (57%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ ++  RN ISWN++I GF   G    ALK    M Q G   D  T    + +   ++ 
Sbjct: 412 IFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAA 471

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + GKQ+H LI K GY +++FV N L+ MYA CG +  A KVF  ++  DL+SWNSL+ G
Sbjct: 472 LQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLISG 531

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +GY+ EA   FEQM      PD  TF+ +LSAC HAG  ++G+  F  M    ++E 
Sbjct: 532 YALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIE- 590

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P AEHY+ +V LLGR G L EA + +  M       ++ +LL+AC+VH N E+   +A R
Sbjct: 591 PLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRVHKNMELGKIAALR 650

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +L+L P++ + Y+ LSN+      W+D   +R LM  R   K PG SW+
Sbjct: 651 LLELEPHNASNYITLSNMHAEAGRWEDVERLRVLMRERRAGKLPGCSWI 699



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 112/241 (46%), Gaps = 23/241 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           ++R    ++ + ++  +  +N +SWNA+IA +      ++A+K F E        D  + 
Sbjct: 245 FARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYK----DCVSW 300

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++     +    E ++++    ++ Y  +V  +  L+      G I++A++VFS +++
Sbjct: 301 TTMINGYVRVGKLDEAREVYN---QMPY-KDVAAKTALMSGLIQNGRIDEASQVFSQLNK 356

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD + WNS++ G    G   EA+ LF QM       +  ++  ++S    AG +D+  + 
Sbjct: 357 RDAICWNSMIAGYCQSGRMSEALNLFRQMP----VKNAVSWNTMISGYAQAGEMDRATEI 412

Query: 186 FYLM--RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFI--NSMSRNPGPSVYKALLSA 241
           F  M  RN  S         + I G L    +L+  +S +      + P  S +   LS+
Sbjct: 413 FEAMGVRNVISWN-------SLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSS 465

Query: 242 C 242
           C
Sbjct: 466 C 466



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 41/203 (20%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+S +  R+ I WN++IAG+C  G   +AL  F +M           + + V    +ISG
Sbjct: 350 VFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQM----------PVKNAVSWNTMISG 399

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
                                        YA  G ++ A ++F +M  R+++SWNSL+ G
Sbjct: 400 -----------------------------YAQAGEMDRATEIFEAMGVRNVISWNSLITG 430

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
              +G   +A++    M +   KPD +TF   LS+C +   +  G Q   L+     +  
Sbjct: 431 FLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELILKSGYIND 490

Query: 198 PRAEHYTAIVGLLGRAGFLNEAE 220
               +  A++ +  + G +  AE
Sbjct: 491 LFVSN--ALIAMYAKCGGVQSAE 511



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 7/146 (4%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +  RN +SWN +IAG+ +    E+A K F  M +     D F+   ++    
Sbjct: 66  DARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAER----DNFSWALMITCYT 121

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
                ++ +++  L+     D+  +  N ++  YA  G  +DA KVF  M  +DLVS+NS
Sbjct: 122 RKGMLEKARELFELV-PDKLDTACW--NAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNS 178

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEI 159
           +L G   +G    A++ FE+M +  +
Sbjct: 179 MLAGYTQNGKMGLAMKFFERMAERNV 204



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 82/162 (50%), Gaps = 14/162 (8%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
           N +V ++A  G ++DA ++F  M +R+LVSWN+++ G  H+    EA +LF+ M +    
Sbjct: 52  NSMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAER--- 108

Query: 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEH--YTAIVGLLGRAGFLNE 218
            D  ++ ++++     G ++K  + F L+       P + +   + A++    + G  ++
Sbjct: 109 -DNFSWALMITCYTRKGMLEKARELFELV-------PDKLDTACWNAMIAGYAKKGRFDD 160

Query: 219 AESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260
           AE     M      S Y ++L+    +G   +A++  +R+ +
Sbjct: 161 AEKVFEKMPVKDLVS-YNSMLAGYTQNGKMGLAMKFFERMAE 201



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 28/213 (13%)

Query: 19  YSSVRTRNQISWNAIIAGF---CNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +  +  RN +SWN ++AGF   C+LGS   A + F ++             + V  + ++
Sbjct: 196 FERMAERNVVSWNLMVAGFVNNCDLGS---AWELFEKIPDP----------NAVSWVTML 242

Query: 76  SGF-KEGKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            GF + GK + A  +F      NV   N ++  Y     I++A K+F     +D VSW +
Sbjct: 243 CGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTT 302

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G    G   EA +++ QM   ++         ++S     G ID+  Q F      +
Sbjct: 303 MINGYVRVGKLDEAREVYNQMPYKDVAAK----TALMSGLIQNGRIDEASQVF------S 352

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
            L    A  + +++    ++G ++EA +    M
Sbjct: 353 QLNKRDAICWNSMIAGYCQSGRMSEALNLFRQM 385



 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 6/172 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C      + V+  +   + ISWN++I+G+   G   +A   F +M   G   D 
Sbjct: 498 IAMYAKCGGVQSAEKVFKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDE 557

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVF 120
            T   ++ A        +G  +   + + G+      ++   LV +    G + +A  + 
Sbjct: 558 VTFIGMLSACSHAGLTNQGVDLFKCMIE-GFAIEPLAEHYSCLVDLLGRMGRLEEAFNIV 616

Query: 121 SSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             M  + +   W SLL  C  H      +     ++  E++P   +  + LS
Sbjct: 617 RGMKVKANAGLWGSLLAACRVH--KNMELGKIAALRLLELEPHNASNYITLS 666


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 107/299 (35%), Positives = 173/299 (57%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C+   + + ++  +  R+ +SW +II+G       + +L+ F +M+ +G++ D   +
Sbjct: 248 YVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIIL 307

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A   +     G+ +   I + G + ++ +   LV MYA CG I  A  +F+ +  
Sbjct: 308 TSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPN 367

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++ +WN+LL G A HG+  EA++ FE M    I+P+  TFL +L+ACCH+G + +G  Y
Sbjct: 368 RNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSY 427

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           FY M +      PR EHY  ++ LL RAG L+EA  FI +M   P   ++ ALLSAC+ +
Sbjct: 428 FYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKAN 487

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           GN E++      +L+L   D  +YVLLSN+    + WDD   +R LM ++GIRK PG S
Sbjct: 488 GNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSS 546



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 130/272 (47%), Gaps = 12/272 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C        V+  +  R+ +SW  +I+G+   G  ++A+  F +M    +  +  T 
Sbjct: 150 YSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMD---VVPNVATF 206

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A G +     GK +H L++K  +   + V N LV MY  C  + +A K+F  + +
Sbjct: 207 VSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPD 266

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG--L 183
           RD+VSW S++ G       +++++LF  MQ + ++PD      VLSAC   G +D G  +
Sbjct: 267 RDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWV 326

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           Q  Y+ R     +       TA+V +  + G +  A    N +  N     + ALL    
Sbjct: 327 QE-YIERQGIEWDIHIG---TALVDMYAKCGCIEMALHIFNGIP-NRNIFTWNALLGGLA 381

Query: 244 VHGNREIAVRSAKRVL--DLWPNDPAIYVLLS 273
           +HG+   A++  + ++   + PN+     +L+
Sbjct: 382 MHGHGHEALKHFELMIGAGIRPNEVTFLAILT 413



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 5/173 (2%)

Query: 10  DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIV 69
           D + DF N   +      + +N +IA + +  + + A   +  +   G   D +T   ++
Sbjct: 55  DYAFDFLN--QTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVL 112

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
            A     G +EG+Q+H +  K+G+  +++VQN L+  Y++CG    A +VF  M  RD+V
Sbjct: 113 KACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVV 172

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           SW  L+ G    G   EA+ LF +M   ++ P+  TF+ VL AC   G++  G
Sbjct: 173 SWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMG 222


>gi|357508205|ref|XP_003624391.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499406|gb|AES80609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 709

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 105/284 (36%), Positives = 166/284 (58%), Gaps = 1/284 (0%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           +  +  ++  SW  +  G    G    AL   ++M++ G+  + FT+ + + A   ++  
Sbjct: 265 FDEIPHKDVCSWTQMADGCLQWGEPRMALAVIAKMKKMGVKPNKFTLATALNACACLASM 324

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           +EGKQ H L  K+G D +V V N L+ MYA CG ++ A  VF S + R +VSW ++++ C
Sbjct: 325 EEGKQFHGLRIKLGSDVDVCVDNALLDMYAKCGCMDSAWTVFRSTNSRSVVSWTTMIMAC 384

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP 198
           A +G   EA+Q+F++M++T ++P+  TF+ VL AC   GF+D+G +Y   M  D  + P 
Sbjct: 385 AQNGQPGEALQIFDEMKETSVEPNYITFICVLYACSQGGFVDEGWKYLSSMDKDYGIIPG 444

Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258
             +HY  +V +LGRAG + EA+  I  M  +PG  V++ LLSACQ+HG+ E    +A+  
Sbjct: 445 E-DHYICMVSILGRAGLIKEAKELILRMPFHPGVRVWQTLLSACQIHGDVETGKLAAEHA 503

Query: 259 LDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +    NDP+ YVLLSN+   T  WD    +R LM  R ++K PG
Sbjct: 504 IKHDKNDPSSYVLLSNMLAETSNWDCVVSLRELMETRNVKKVPG 547



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 1/169 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++ +   R+ ++WN ++ G+    S EQ    +  M + G+  D FT  S +  +  IS
Sbjct: 163 QIFETSPIRDTVTWNTMMGGYLEFSS-EQIPVFWRYMNREGVKPDEFTFASALTGLATIS 221

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             K G Q+HA + + GY  ++ V N LV MY     + +  K F  +  +D+ SW  +  
Sbjct: 222 SLKMGMQVHAQLVRSGYGDDICVGNSLVDMYLKNQKLEEGFKAFDEIPHKDVCSWTQMAD 281

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           GC   G  R A+ +  +M+K  +KP+  T    L+AC     +++G Q+
Sbjct: 282 GCLQWGEPRMALAVIAKMKKMGVKPNKFTLATALNACACLASMEEGKQF 330



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 4/181 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFT 64
           Y +C        ++  +  RN +SW++++ G  + G    AL  FS M + G +  + FT
Sbjct: 50  YIKCKDLTSALQLFDEMPERNVVSWSSVMTGCVHNGGASDALSLFSCMHREGFVKPNEFT 109

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S + A  +     +  Q+++L+ + G + NVF+ N  +      G + +A ++F +  
Sbjct: 110 FVSALQACSLSENVTQAYQIYSLVVRSGLECNVFLLNAFLTALVRNGKLTEALQIFETSP 169

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLF-EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            RD V+WN+++ G  +  +S E + +F   M +  +KPD  TF   L+       +  G+
Sbjct: 170 IRDTVTWNTMMGG--YLEFSSEQIPVFWRYMNREGVKPDEFTFASALTGLATISSLKMGM 227

Query: 184 Q 184
           Q
Sbjct: 228 Q 228



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S F +G  +HA   K      +F+QN L+ MY  C  +  A ++F  M ER++VSW+S++
Sbjct: 19  SNFLKGTAIHAYFIKGHIPFTLFLQNHLLNMYIKCKDLTSALQLFDEMPERNVVSWSSVM 78

Query: 136 LGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
            GC H+G + +A+ LF  M +   +KP+  TF+  L AC  +  + +  Q + L+
Sbjct: 79  TGCVHNGGASDALSLFSCMHREGFVKPNEFTFVSALQACSLSENVTQAYQIYSLV 133



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        V+ S  +R+ +SW  +I      G   +AL+ F EM++  ++ +Y T 
Sbjct: 353 YAKCGCMDSAWTVFRSTNSRSVVSWTTMIMACAQNGQPGEALQIFDEMKETSVEPNYITF 412

Query: 66  TSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAI---CGAINDANKVFS 121
             ++ A        EG K + ++    G    +  ++  + M +I    G I +A ++  
Sbjct: 413 ICVLYACSQGGFVDEGWKYLSSMDKDYGI---IPGEDHYICMVSILGRAGLIKEAKELIL 469

Query: 122 SMDERDLVS-WNSLLLGCAHHG 142
            M     V  W +LL  C  HG
Sbjct: 470 RMPFHPGVRVWQTLLSACQIHG 491


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  216 bits (551), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 108/279 (38%), Positives = 173/279 (62%), Gaps = 1/279 (0%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SW+++++G+   G  E  +K F  M    I +D  T+ +I+ A       + GKQ+HA 
Sbjct: 349 VSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAY 408

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           I KIG   + +V + L+ MY+  G+++DA  +F  + E ++V W S++ GCA HG  +EA
Sbjct: 409 IQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEA 468

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           + LFE M    I P+  TF+ VL+AC H G I++G +YF +M++   +  P  EHYT++V
Sbjct: 469 ISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHIN-PEVEHYTSMV 527

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267
            L GRAG L EA++FI   S +   SV+++ LS+C++H N  +    ++ +L   P+DP 
Sbjct: 528 NLYGRAGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPD 587

Query: 268 IYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            Y+LLSN+  +   WD+A  +R+LMY RG++K+PG SWV
Sbjct: 588 AYILLSNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQSWV 626



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 126/267 (47%), Gaps = 23/267 (8%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ +   ++ +SWN II G    G    AL+    M   G +    T +  +  +  +S 
Sbjct: 222 MFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSL 281

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-------------- 123
            + G+Q+H  +   G +S+ ++++ LV MY  CG ++ A+ +   +              
Sbjct: 282 VEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTC 341

Query: 124 --DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
              +  +VSW+S++ G   +G   + ++ F  M    I  D  T   ++SAC +AG ++ 
Sbjct: 342 KEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEF 401

Query: 182 GLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           G Q + Y+ +    ++       ++++ +  ++G L++A      + + P   ++ +++S
Sbjct: 402 GKQIHAYIQKIGLRIDAYVG---SSLIDMYSKSGSLDDALMIFEQI-KEPNVVLWTSMIS 457

Query: 241 ACQVHGNREIAVRSAKRVLDL--WPND 265
            C +HG  + A+   + +L+L   PN+
Sbjct: 458 GCALHGQGKEAISLFEGMLNLGIIPNE 484



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 6/189 (3%)

Query: 3   ILTYSRCDSSLDF-QNVYSSVRTRNQISWNAIIAGFCNL-GSGEQALKCFSEMRQAGIDI 60
           +LT     S+LD    ++  +  +N  +W  +I+GF    GS E     F EM+  G   
Sbjct: 73  LLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQADGACP 132

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           + +T++S++      +  + GK +HA I + G   +V ++N ++ +Y  C     A   F
Sbjct: 133 NQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFF 192

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M E+D+VSWN ++      G   +++++F      ++     ++  ++      G+  
Sbjct: 193 ELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDV----VSWNTIIDGLIQCGYER 248

Query: 181 KGLQYFYLM 189
             L+  Y M
Sbjct: 249 LALEQLYCM 257



 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 5/174 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+  S  D   ++  ++  N + W ++I+G    G G++A+  F  M   GI  +  T 
Sbjct: 428 YSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTF 487

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQN--RLVFMYAICGAINDA-NKVFSS 122
             ++ A   +   +EG +   ++ K  Y  N  V++   +V +Y   G + +A N +F +
Sbjct: 488 VGVLNACSHVGLIEEGCRYFRMM-KDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFEN 546

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQ-MQKTEIKPDGTTFLVVLSACCH 175
                   W S L  C  H        + E  +Q     PD    L  + +  H
Sbjct: 547 SISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNH 600



 Score = 40.8 bits (94), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 15/152 (9%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           + +H   FK G    +   N L+ +Y     ++ A+K+F  +  ++  +W  L+ G A  
Sbjct: 52  RALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARA 111

Query: 142 GYSREAV-QLFEQMQKTEIKPDGTTFLVVLSACCHAGFID--KGLQYFYLMRN----DAS 194
             S E V  LF +MQ     P+  T   VL  C     I   KG+ + +++RN    D  
Sbjct: 112 AGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGI-HAWILRNGVGGDVV 170

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           LE        +I+ L  +      AESF   M
Sbjct: 171 LE-------NSILDLYLKCKEFEYAESFFELM 195


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  216 bits (551), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 185/302 (61%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +  D + V+ ++  R+ +SW+A+I  +   G G +A + F  M+++ I+ D  T 
Sbjct: 405 YAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTY 464

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A G +     G +++    K    S+V + N L+ M A  G++  A  +F +M  
Sbjct: 465 INLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVR 524

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+++WN+++ G + HG +REA+ LF++M K   +P+  TF+ VLSAC  AGF+D+G ++
Sbjct: 525 RDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRF 584

Query: 186 F-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           F YL+     +  P  + Y  +V LLGRAG L+EAE  I SM   P  S++ +LL AC++
Sbjct: 585 FTYLLEGRGIV--PTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRI 642

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN ++A R+A+R L + P D A+YV LS++  A   W++   +R +M +RGIRK+ G +
Sbjct: 643 HGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCT 702

Query: 305 WV 306
           W+
Sbjct: 703 WI 704



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 146/279 (52%), Gaps = 7/279 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+ C S    + V+ +++ R+ +SW  +I G+   G+ E A   F+ M++ GI  D 
Sbjct: 301 IRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDR 360

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   I+ A  + +     +++H+ +   G+ +++ V   LV MYA CGAI DA +VF +
Sbjct: 361 ITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDA 420

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD+VSW++++     +GY  EA + F  M+++ I+PDG T++ +L+AC H G +D G
Sbjct: 421 MPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVG 480

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           ++ Y   ++ D     P      A++ +  + G +  A    ++M R    + + A++  
Sbjct: 481 MEIYTQAIKADLVSHVPLG---NALIIMNAKHGSVERARYIFDTMVRRDVIT-WNAMIGG 536

Query: 242 CQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
             +HGN   A+    R+L     PN      +LS  S+A
Sbjct: 537 YSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRA 575



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 96/171 (56%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS C +  + + ++ SV  +  ++WNA+IAG+  +G  ++A   F +M   G++   
Sbjct: 99  IKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSI 158

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S++ A    +G   GK++HA +   G+ S+  +   LV MY   G+++DA +VF  
Sbjct: 159 ITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDG 218

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +  RD+ ++N ++ G A  G   +A +LF +MQ+  +KP+  +FL +L  C
Sbjct: 219 LHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGC 269



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 6/225 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +  S  D + V+  +  R+  ++N ++ G+   G  E+A + F  M+Q G+  +  + 
Sbjct: 203 YVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISF 262

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+           GK +HA     G   ++ V   L+ MY  CG+I  A +VF +M  
Sbjct: 263 LSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKV 322

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSW  ++ G A +G   +A  LF  MQ+  I+PD  T++ +++AC     I   L +
Sbjct: 323 RDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACA----ISANLNH 378

Query: 186 FYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSR 228
              + +   +     +    TA+V +  + G + +A    ++M R
Sbjct: 379 AREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPR 423



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 78/146 (53%), Gaps = 2/146 (1%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GKQ+   I + G   N++  N L+ +Y+ICG + +A ++F S++ + +V+WN+L+ G A 
Sbjct: 76  GKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQ 135

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRA 200
            G+ +EA  LF QM    ++P   TFL VL AC     ++ G +    +     +   R 
Sbjct: 136 VGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRI 195

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSM 226
              TA+V +  + G +++A    + +
Sbjct: 196 G--TALVSMYVKGGSMDDARQVFDGL 219


>gi|255568478|ref|XP_002525213.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535510|gb|EEF37179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 501

 Score =  216 bits (551), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 178/309 (57%), Gaps = 12/309 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C    +   ++  +  RN ++W AII+GF      +  L+ FS MR + +  + 
Sbjct: 148 ITLYGKCGKLDNAHKLFHEMPVRNVVTWTAIISGFAQECQVDVCLELFSVMRNSTLKPND 207

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT TS++ A        +G   H  I ++G+ S + V N L+ MY   G+++DA  +F++
Sbjct: 208 FTFTSLLSACTGSGALGQGTSAHCQIIQMGFHSYLHVANALISMYCKSGSVHDAFYIFNN 267

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  +D+VSWNS++ G A HG + +A+ LFE+M K  +KPD  TFL VLSAC HAGF+  G
Sbjct: 268 IYSKDIVSWNSMISGYAQHGLAMQAIDLFEKMTKLGVKPDSITFLGVLSACRHAGFVQGG 327

Query: 183 LQYF-----YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
             YF     Y +R       P+ +HY+ +V LLGRAG + EA   I  M   P   ++ +
Sbjct: 328 RNYFNSMVEYHLR-------PQLDHYSCLVDLLGRAGLIEEALDIILRMPILPNAVIWGS 380

Query: 238 LLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
           LLS+C++HG+  I +++A++ L L P   A +V L+N+  +   WD A  +R +M + G+
Sbjct: 381 LLSSCRLHGSVWIGIQAAEQRLLLEPACAATHVQLANLYASVRYWDKAAKVRKVMKDTGL 440

Query: 298 RKKPGYSWV 306
           +  PGYSW+
Sbjct: 441 KTNPGYSWI 449



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 60/102 (58%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G Q H L    G+ SN +V + L+ +Y  CG +++A+K+F  M  R++V+W +++ G A 
Sbjct: 125 GIQFHCLAITSGFISNSYVGSSLITLYGKCGKLDNAHKLFHEMPVRNVVTWTAIISGFAQ 184

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
                  ++LF  M+ + +KP+  TF  +LSAC  +G + +G
Sbjct: 185 ECQVDVCLELFSVMRNSTLKPNDFTFTSLLSACTGSGALGQG 226


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  216 bits (551), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 174/304 (57%), Gaps = 2/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    D ++V+  +  ++ + WNA+  G+      E+ALK +S ++ +    + 
Sbjct: 474 IDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNE 533

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  +++ A   ++  + G+Q H  + K+G D   FV N LV MYA CG+I +A K+F+S
Sbjct: 534 FTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNS 593

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              RD+V WNS++   A HG + EA+ +F +M K  I+P+  TF+ VLSAC HAG ++ G
Sbjct: 594 SIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDG 653

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L +F  M        P  EHY  +V LLGR+G L EA+ FI  M   P   V+++LLSAC
Sbjct: 654 LNHFNSMPGFGI--KPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSAC 711

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++ GN E+   +A+  +   P D   Y+LLSN+  +   W D   +R  M +  + K+PG
Sbjct: 712 RIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPG 771

Query: 303 YSWV 306
            SW+
Sbjct: 772 RSWI 775



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 141/300 (47%), Gaps = 10/300 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++ +  +D + V+  +  +N IS+NA+I G+ +     +AL+ F EMR         T 
Sbjct: 376 YAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTF 435

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++G    +   +  KQ+H LI K G   ++F  + L+ +Y+ C  + DA  VF  M+E
Sbjct: 436 VSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNE 495

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+V WN++  G   H  + EA++L+  +Q +  KP+  TF  +++A  +   +  G Q+
Sbjct: 496 KDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQF 555

Query: 186 F-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
              L++      P       A+V +  + G + EA    NS S       + +++S    
Sbjct: 556 HNQLVKMGLDFCPFVT---NALVDMYAKCGSIEEARKMFNS-SIWRDVVCWNSMISTHAQ 611

Query: 245 HGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           HG  E A+   + ++   + PN      +LS  S A    D      ++    G   KPG
Sbjct: 612 HGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSM---PGFGIKPG 668



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 146/295 (49%), Gaps = 8/295 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+  +  + + V+  +  +  ++W  IIAG+   G    +L+ F++MR+  +  D + +
Sbjct: 174 YSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVV 233

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A  ++   + GKQ+HA + + G + +V V N L+  Y  C  +    K+F  M  
Sbjct: 234 SSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVV 293

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           ++++SW +++ G   + +  EA++LF +M +   KPDG     VL++C     +++G Q 
Sbjct: 294 KNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQV 353

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS--AC 242
           + Y ++  A+LE         ++ +  ++  L +A+   + M+     S Y A++   + 
Sbjct: 354 HAYTIK--ANLESDEFVK-NGLIDMYAKSNLLIDAKKVFDVMAEQNVIS-YNAMIEGYSS 409

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
           Q   +  + +    RV  L+P     +V L  VS +    + +  I  L+   G+
Sbjct: 410 QEKLSEALELFHEMRV-RLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGV 463



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 106/192 (55%), Gaps = 2/192 (1%)

Query: 7   SRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTI 65
           S+ D   + + V+  +  +N I+W+++++ +   G  E+AL  F ++ R++G   + F +
Sbjct: 73  SKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVL 132

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +   ++G Q+H  + + G+D +V+V   L+  Y+  G I +A  VF  + E
Sbjct: 133 ASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSE 192

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +  V+W +++ G    G S  +++LF QM++T + PD      VLSAC    F++ G Q 
Sbjct: 193 KTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQI 252

Query: 185 YFYLMRNDASLE 196
           + Y++R    ++
Sbjct: 253 HAYVLRRGTEMD 264



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           K +H  I   G  S+ F+ N L+ + +    +++A  VF  M  ++L++W+S++   +  
Sbjct: 47  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 106

Query: 142 GYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           GYS EA+ +F  +Q K+   P+      V+ AC   G ++KG Q
Sbjct: 107 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQ 150


>gi|356564808|ref|XP_003550640.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37320-like [Glycine max]
          Length = 501

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 172/304 (56%), Gaps = 2/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC    D   V+  +  RN +SW AIIAGF      +  L+ F +MR + +  +Y
Sbjct: 149 ISLYSRCAFLGDACRVFEEMPVRNVVSWTAIIAGFAQEWHVDMCLELFQQMRGSDLRPNY 208

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT TS++ A         G+  H  I ++G+ S + ++N L+ MY+ CGAI+DA  +F +
Sbjct: 209 FTYTSLLSACMGSGALGHGRCAHCQIIRMGFHSYLHIENALISMYSKCGAIDDALHIFEN 268

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD+V+WN+++ G A HG ++EA+ LFE+M K  + PD  T+L VLS+C H G + +G
Sbjct: 269 MVSRDVVTWNTMISGYAQHGLAQEAINLFEEMIKQGVNPDAVTYLGVLSSCRHGGLVKEG 328

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF  M        P  +HY+ IV LLGRAG L EA  FI +M   P   V+ +LLS+ 
Sbjct: 329 QVYFNSMVEHGV--QPGLDHYSCIVDLLGRAGLLLEARDFIQNMPIFPNAVVWGSLLSSS 386

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HG+  I + +A+  L + P   A    L+N+      W+    +R  M ++G++  PG
Sbjct: 387 RLHGSVPIGIEAAENRLLMEPGCSATLQQLANLYARVGWWNKVARVRKSMKDKGLKPNPG 446

Query: 303 YSWV 306
            SWV
Sbjct: 447 CSWV 450



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 72/128 (56%)

Query: 55  QAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN 114
           + G  +D F ++  V + G       G Q H L    G+ ++V+V + L+ +Y+ C  + 
Sbjct: 100 EQGFGVDVFFLSQAVSSCGSKRDLWGGIQYHCLAITTGFVASVYVGSSLISLYSRCAFLG 159

Query: 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
           DA +VF  M  R++VSW +++ G A   +    ++LF+QM+ ++++P+  T+  +LSAC 
Sbjct: 160 DACRVFEEMPVRNVVSWTAIIAGFAQEWHVDMCLELFQQMRGSDLRPNYFTYTSLLSACM 219

Query: 175 HAGFIDKG 182
            +G +  G
Sbjct: 220 GSGALGHG 227


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 177/306 (57%), Gaps = 6/306 (1%)

Query: 6   YSRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--D 61
           Y++C      + ++ S+  + R+ ++W  +I G+   G   +AL+  SEM +       +
Sbjct: 417 YAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPN 476

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDS-NVFVQNRLVFMYAICGAINDANKVF 120
            FTI+  + A   ++  + GKQ+HA   +   ++  +FV N L+ MYA CG+I+DA  VF
Sbjct: 477 AFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVF 536

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            +M  ++ V+W SL+ G   HGY  EA+ +F++M++   K DG T LVVL AC H+G ID
Sbjct: 537 DNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMID 596

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +G++YF  M+    + P   EHY  +V LLGRAG LN A   I  M   P P V+ A LS
Sbjct: 597 QGMEYFNRMKTVFGVSPG-PEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLS 655

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
            C++HG  E+   +A+++ +L  N    Y LLSN+      W D   IR+LM ++G++K+
Sbjct: 656 CCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKR 715

Query: 301 PGYSWV 306
           PG SWV
Sbjct: 716 PGCSWV 721



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 103/184 (55%), Gaps = 6/184 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           +  YSRC S  D + V+  +   + +SWN+II  +  LG  + AL+ FS M  + G   D
Sbjct: 169 VAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPD 228

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             T+ +++     +     GKQ+H          N+FV N LV MYA CG +++AN VFS
Sbjct: 229 NITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFS 288

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           +M  +D+VSWN+++ G +  G   +AV+LFE+MQ+ +IK D  T+   +S     G+  +
Sbjct: 289 NMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAIS-----GYAQR 343

Query: 182 GLQY 185
           GL Y
Sbjct: 344 GLGY 347



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 4/225 (1%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN++I  + + G   + L  F  M       D +T   +  A G IS  + G+  HAL  
Sbjct: 95  WNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSL 154

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
             G+ SNVFV N LV MY+ C +++DA KVF  M   D+VSWNS++   A  G  + A++
Sbjct: 155 VTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALE 214

Query: 150 LFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208
           +F +M  +   +PD  T + VL  C   G    G Q          ++     +   +V 
Sbjct: 215 MFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGN--CLVD 272

Query: 209 LLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           +  + G ++EA +  ++MS     S + A+++     G  E AVR
Sbjct: 273 MYAKCGMMDEANTVFSNMSVKDVVS-WNAMVAGYSQIGRFEDAVR 316



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 121/251 (48%), Gaps = 17/251 (6%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F+ +       + ++W+A I+G+   G G +AL    +M  +GI  +  T+ S++     
Sbjct: 318 FEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCAS 377

Query: 75  ISGFKEGKQMHALIFKI-------GYDSNVFVQNRLVFMYAICGAINDANKVFSSMD--E 125
           +     GK++H    K        G+     V N+L+ MYA C  ++ A  +F S+   E
Sbjct: 378 VGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKE 437

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           RD+V+W  ++ G + HG + +A++L  +M  +  + +P+  T    L AC     +  G 
Sbjct: 438 RDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGK 497

Query: 184 Q-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE-SFINSMSRNPGPSVYKALLSA 241
           Q + Y +RN  +  P    +   ++ +  + G +++A   F N M++N     + +L++ 
Sbjct: 498 QIHAYALRNQQNAVPLFVSN--CLIDMYAKCGSISDARLVFDNMMAKN--EVTWTSLMTG 553

Query: 242 CQVHGNREIAV 252
             +HG  E A+
Sbjct: 554 YGMHGYGEEAL 564


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 109/299 (36%), Positives = 173/299 (57%), Gaps = 4/299 (1%)

Query: 9   CDSSLDFQN---VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           C + LD  N   ++  V      SW ++IAG+   G  ++A+  F++M +AG+  +  T+
Sbjct: 171 CLNLLDLSNGRILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTV 230

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A   +     G ++H    + G+  NV + N L+ MY  CG + +A KVF  M+E
Sbjct: 231 VAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEE 290

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R +VSW++++ G A HG + EA++LF  M +  I+P+G TF+ +L AC H G I +G ++
Sbjct: 291 RTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRF 350

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  +  P+ EHY  +V LL RAG L+EA  FI +M   P   V+ ALL AC+VH
Sbjct: 351 FASMTRDYGI-IPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVH 409

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
            N E+A  + K +L+L P +   YV+LSN+      W+D   +R  M +R ++K PG+S
Sbjct: 410 KNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWS 468



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    +   V+  +  R  +SW+A+I G    G  E+AL+ FS+M Q GI+ +  T 
Sbjct: 272 YVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTF 331

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A   +    EG++  A + +  G    +     +V + +  G +++A++   +M 
Sbjct: 332 IGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMP 391

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            + + V W +LL  C  H     A +  + +   E+ P    + VVLS
Sbjct: 392 MKPNGVVWGALLGACRVHKNVEMAEEAIKHL--LELDPLNDGYYVVLS 437


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 177/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S +D +  +  ++  + + W ++I G+   G  E AL  +  M   GI  +  T+
Sbjct: 355 YAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTM 414

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   ++  ++GKQ+HA   K G+   V + + L  MYA CG + D   VF  M  
Sbjct: 415 ASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPA 474

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD++SWN+++ G + +G  +EA++LFE+MQ    KPD  TF+ +LSAC H G +++G  Y
Sbjct: 475 RDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGY 534

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M ++  ++ PR EHY  +V +L RAG L EA  F  S + + G  +++ +L AC+ +
Sbjct: 535 FRMMFDEFGMD-PRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNY 593

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   + +++++L   + + YVLLS++  A   W+D   +R +M  RG+ K+PG SW
Sbjct: 594 RNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSW 653

Query: 306 V 306
           +
Sbjct: 654 I 654



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 100/182 (54%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++C S  D    + +   +N I+W+A+I G+   G  ++ALK FS M  +GI    
Sbjct: 251 VTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSE 310

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT   ++ A   +    EGKQ+H  + K+G++S ++V   LV MYA C +I DA K F  
Sbjct: 311 FTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDY 370

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + E D+V W S++ G   +G + +A+ L+ +M+   I P+  T   VL AC     +++G
Sbjct: 371 LQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQG 430

Query: 183 LQ 184
            Q
Sbjct: 431 KQ 432



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 105/186 (56%), Gaps = 1/186 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +   + + + V+ ++  RN +SW  +I+G+ +     +AL  F  MR+     + F  
Sbjct: 153 YCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVF 212

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A+ +      GKQ+H +  K G  S V V N LV MYA CG+++DA + F +  +
Sbjct: 213 TSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSD 272

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           ++ ++W++++ G A  G S +A++LF  M  + I+P   TF+ V++AC   G   +G Q 
Sbjct: 273 KNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQV 332

Query: 185 YFYLMR 190
           + YL++
Sbjct: 333 HDYLLK 338



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 130/283 (45%), Gaps = 9/283 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLG--SGEQALKCFSEMRQAGIDIDYF 63
           Y++C    + + V+  ++ ++ +SWN II G+   G       ++ F  MR      +  
Sbjct: 50  YAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAH 109

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T   +  A   +     G+  HA+  K+    +VFV + L+ MY   G   +A KVF +M
Sbjct: 110 TFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTM 169

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            ER+ VSW +++ G A    + EA+ LF  M++ E   +   F  VLSA      ++ G 
Sbjct: 170 PERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGK 229

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSAC 242
           Q   +   +  L      +  A+V +  + G L++A ++F  S  +N     + A+++  
Sbjct: 230 QIHCIAVKNGLLSIVSVGN--ALVTMYAKCGSLDDALQTFETSSDKN--SITWSAMITGY 285

Query: 243 QVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWD 283
              G+ + A++  S+  +  + P++     +++  S     W+
Sbjct: 286 AQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWE 328



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            ++GK +HA I K    S V++ N LV +YA C  + +A  VF  +  +D+VSWN ++ G
Sbjct: 22  LQKGKALHAQIIK-SSSSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIING 80

Query: 138 CAHHGY--SREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            + HG   S   ++LF++M+     P+  TF  V +A
Sbjct: 81  YSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTA 117


>gi|242093006|ref|XP_002436993.1| hypothetical protein SORBIDRAFT_10g014210 [Sorghum bicolor]
 gi|241915216|gb|EER88360.1| hypothetical protein SORBIDRAFT_10g014210 [Sorghum bicolor]
          Length = 698

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 179/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC  +   + V++ +  ++ ISW A++  +   G  E+ L  F EM + G+    
Sbjct: 378 ITVYGRCGDTTSAETVFNLMEEQDIISWTALLTCYAQNGLDEEVLLFFREMLRRGLGSPV 437

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F +TS++ A    S    G Q+H+   K+G D +  V+N LV +YA CG++  A K+F+S
Sbjct: 438 FCMTSVLRACSRTSNLAIGLQIHSRTVKLGIDDDNSVENALVTLYANCGSVQVALKIFNS 497

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD+V+WN+LL   + HG    A+QLF+ MQ+ E+ PD  TF+ +LS+C   G + +G
Sbjct: 498 MSNRDIVTWNALLTSFSQHGNEVAAIQLFDLMQEEEVCPDDYTFVGLLSSCSRMGLVKEG 557

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M+   +LE P+  HYT +V L  RAG   +A  FI++M   P   +++ALL++C
Sbjct: 558 CEYFNEMKAKYNLE-PKMVHYTCMVDLFARAGRFCDAMDFIDAMPYEPDQILWEALLASC 616

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN  +   +AK++L++ P+D + Y+ LS++  + D WD+    RT+   +  RK  G
Sbjct: 617 KIHGNLGLGRIAAKKILEITPHDYSAYITLSSIHASVDMWDEKCWNRTVFDTQQARKDTG 676

Query: 303 YSWV 306
            SW+
Sbjct: 677 RSWI 680



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 120/279 (43%), Gaps = 16/279 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    +   +   +R  +  S  +++  +   G   +A+  F EM    + ID   +
Sbjct: 281 YGRCGGVDEIARLACRIR-HDVFSRTSLLGAYARNGYNAEAIGVFKEMILTNMAIDQSAM 339

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T ++     +   +  +++H    K  +  +  + N ++ +Y  CG    A  VF+ M+E
Sbjct: 340 TCLLQVCSSVGQLRMVREVHCYALKTFFKLDTLLLNAIITVYGRCGDTTSAETVFNLMEE 399

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D++SW +LL   A +G   E +  F +M +  +         VL AC     +  GLQ 
Sbjct: 400 QDIISWTALLTCYAQNGLDEEVLLFFREMLRRGLGSPVFCMTSVLRACSRTSNLAIGLQI 459

Query: 186 FYL-----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
                   + +D S+E        A+V L    G +  A    NSMS N     + ALL+
Sbjct: 460 HSRTVKLGIDDDNSVE-------NALVTLYANCGSVQVALKIFNSMS-NRDIVTWNALLT 511

Query: 241 ACQVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSK 277
           +   HGN   A++     +  ++ P+D     LLS+ S+
Sbjct: 512 SFSQHGNEVAAIQLFDLMQEEEVCPDDYTFVGLLSSCSR 550



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 12/212 (5%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR----QAGID-IDYFTITSIVG 70
           + ++  +  RN +SW+ +I+G    G   +A   FS M     Q   D  D F + ++V 
Sbjct: 81  RRLFDEMSRRNLVSWSVVISGSARHGVLAEAFALFSHMLHGAGQGSWDRPDSFMLGALVA 140

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
                     G Q+HA + K G D +  V   LV MYA CG ++ + + F+   +R ++S
Sbjct: 141 GCSRARHVDAGVQVHACVAKFGVDEDESVAAALVDMYAKCGWVDSSWRAFTLAPQRSVLS 200

Query: 131 WNSL---LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YF 186
           W S+   L+     GY   A+ LF++M   ++ P   TF  +L        +  G+Q + 
Sbjct: 201 WTSMIACLVNQGSSGYHDAAMLLFKKMLALKVWPTNVTFSCILKVFNTPDLLSVGMQIHG 260

Query: 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218
            L++    ++       +A++ + GR G ++E
Sbjct: 261 CLLKIGTEVDTALG---SALMTMYGRCGGVDE 289



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 9/239 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSG---EQALKCFSEMRQAGIDIDY 62
           Y++C         ++    R+ +SW ++IA   N GS    + A+  F +M    +    
Sbjct: 177 YAKCGWVDSSWRAFTLAPQRSVLSWTSMIACLVNQGSSGYHDAAMLLFKKMLALKVWPTN 236

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T + I+           G Q+H  + KIG + +  + + L+ MY  CG +++  ++   
Sbjct: 237 VTFSCILKVFNTPDLLSVGMQIHGCLLKIGTEVDTALGSALMTMYGRCGGVDEIARLACR 296

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +   D+ S  SLL   A +GY+ EA+ +F++M  T +  D +    +L  C   G +   
Sbjct: 297 I-RHDVFSRTSLLGAYARNGYNAEAIGVFKEMILTNMAIDQSAMTCLLQVCSSVGQLRMV 355

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
            + + Y ++    L+        AI+ + GR G    AE+  N M      S + ALL+
Sbjct: 356 REVHCYALKTFFKLDTLL---LNAIITVYGRCGDTTSAETVFNLMEEQDIIS-WTALLT 410



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H +  K+G  ++ F+ N L+  Y        A ++F  M  R+LVSW+ ++ G A HG  
Sbjct: 49  HGVAIKLGCIASTFLCNNLLHAYLSRSVPAHARRLFDEMSRRNLVSWSVVISGSARHGVL 108

Query: 145 REAVQLFEQM-----QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            EA  LF  M     Q +  +PD      +++ C  A  +D G+Q
Sbjct: 109 AEAFALFSHMLHGAGQGSWDRPDSFMLGALVAGCSRARHVDAGVQ 153


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 1011

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 108/279 (38%), Positives = 174/279 (62%), Gaps = 1/279 (0%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SW  +++G+   G  E  LK F  M +  + +D  T+T+I+ A       + G+ +HA 
Sbjct: 605 VSWGLMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAY 664

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
             KIG+  + +V + L+ MY+  G+++DA  +F   +E ++V W S++ GCA HG  ++A
Sbjct: 665 NHKIGHRIDAYVGSSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWTSMISGCALHGQGKQA 724

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           + LFE+M    I P+  TFL VL+ACCHAG +++G +YF +M+ DA    P  EH T++V
Sbjct: 725 ICLFEEMLNQGIIPNEVTFLGVLNACCHAGLLEEGCRYFRMMK-DAYCINPGVEHCTSMV 783

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267
            L GRAG L E ++FI     +   SV+K+ LS+C++H N E+    ++ +L + P+DP 
Sbjct: 784 DLYGRAGHLTETKNFIFENGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPG 843

Query: 268 IYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            YVLLSN+  +   WD+A  +R+LM+ RGI+K+PG SW+
Sbjct: 844 AYVLLSNMCASNHRWDEAARVRSLMHQRGIKKQPGQSWI 882



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 93/188 (49%), Gaps = 5/188 (2%)

Query: 3   ILTYSRCDSSLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           +LT     S++D  + ++  +  RN  +W  +I+GF   GS E   K F EMR  G   +
Sbjct: 330 LLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKGACPN 389

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +T++S+     +    + GK +HA + + G D++V + N ++ +Y  C     A +VF 
Sbjct: 390 QYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFE 449

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M+E D+VSWN ++      G   +++ +F ++   ++     ++  ++      G+  +
Sbjct: 450 LMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDV----VSWNTIVDGLMQFGYERQ 505

Query: 182 GLQYFYLM 189
            L+  Y M
Sbjct: 506 ALEQLYCM 513



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 133/285 (46%), Gaps = 25/285 (8%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           + I  Y R        +++  +  ++ +SWN I+ G    G   QAL+    M + G + 
Sbjct: 461 IMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQALEQLYCMVECGTEF 520

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
              T +  +     +S  + G+Q+H ++ K G+  + F+++ LV MY  CG +++A+ V 
Sbjct: 521 SVVTFSIALILSSSLSLVELGRQLHGMVLKFGFCRDGFIRSSLVEMYCKCGRMDNASIVL 580

Query: 121 SSMD----------------ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164
             +                 +  +VSW  ++ G   +G   + ++ F  M +  +  D  
Sbjct: 581 KDVPLDFLKNGNAGVTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVRELVVVDIR 640

Query: 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESF 222
           T   ++SAC +AG ++ G ++ +   +       R + Y  ++++ +  ++G L++A + 
Sbjct: 641 TVTTIISACANAGILEFG-RHVHAYNHKIG---HRIDAYVGSSLIDMYSKSGSLDDAWT- 695

Query: 223 INSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPND 265
           I   +  P    + +++S C +HG  + A+   + +L+  + PN+
Sbjct: 696 IFRQTNEPNIVFWTSMISGCALHGQGKQAICLFEEMLNQGIIPNE 740



 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +HAL  K G    +   N L+ +Y     ++ A K+F  + +R+  +W  L+ G +  G 
Sbjct: 311 LHALSVKNGSLQTLNSANYLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGS 370

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-----YFYLMRN 191
           S    +LF +M+     P+  T L  L  CC    +D  LQ     + +++RN
Sbjct: 371 SEVVFKLFREMRAKGACPNQYT-LSSLFKCCS---LDINLQLGKGVHAWMLRN 419



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 6/172 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+  S  D   ++      N + W ++I+G    G G+QA+  F EM   GI  +  T 
Sbjct: 684 YSKSGSLDDAWTIFRQTNEPNIVFWTSMISGCALHGQGKQAICLFEEMLNQGIIPNEVTF 743

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQN--RLVFMYAICGAINDA-NKVFSS 122
             ++ A       +EG +   ++ K  Y  N  V++   +V +Y   G + +  N +F +
Sbjct: 744 LGVLNACCHAGLLEEGCRYFRMM-KDAYCINPGVEHCTSMVDLYGRAGHLTETKNFIFEN 802

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
                   W S L  C  H        + E +   ++ P      V+LS  C
Sbjct: 803 GISHLTSVWKSFLSSCRLHKNVEMGKWVSEML--LQVAPSDPGAYVLLSNMC 852


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 111/287 (38%), Positives = 168/287 (58%), Gaps = 1/287 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  RN +SWN++I+GF        AL  F  MR+     D+ T  S + A   ++ 
Sbjct: 412 IFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRACANLAV 471

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G+Q+H L+ + G+ ++ F  N L+  YA CG I +A ++F  M  +D+VSWN+L+ G
Sbjct: 472 LHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQIFDEMVYKDIVSWNALIDG 531

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G   EA+ +F +M+   ++PD  TF+ +LSAC HAG ID+GL +FY M  +  L+P
Sbjct: 532 YASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLIDEGLFFFYSMTKEYLLKP 591

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
             AEHY  +V LLGRAG LNEA   +  M   P   V+ ALL AC +H N E+A  +A+R
Sbjct: 592 V-AEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACHMHKNHELAQLAAER 650

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           + +L P   + YVLLSN+S     WD++   R  +  +G+ K PG +
Sbjct: 651 LSELEPRKASNYVLLSNISAEAGKWDESEKARASIKEKGVNKPPGLA 697



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 18/209 (8%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  RN +SWNA+IA   + G    A   F  M       D F+ T +V        
Sbjct: 71  LFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRMPVR----DEFSWTVMVSCYARGGD 126

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            +  +    ++ ++  D      N ++  YA  G  +DA K+   M   DLVSWNS L G
Sbjct: 127 LELARD---VLDRMPGDKCTACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAG 183

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
               G    AVQ F++M K     D T++ ++L+     G ++    +F      A +E 
Sbjct: 184 LTQSGEMVRAVQFFDEMVK-----DMTSWNLMLAGFVRTGDLNAASSFF------AKIES 232

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           P    +  ++    RAG + +A    + M
Sbjct: 233 PNVISWVTLLNGYCRAGRIADARDLFDRM 261



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 35/212 (16%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R     D ++++  +  RN ++WN ++ G+ +L   E+A K F EM       +  + 
Sbjct: 245 YCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIK----NSISW 300

Query: 66  TSIVGAIGVISGFKEGKQ----------------MHALIFKIGYDS-----------NVF 98
           T+I+  +      +E K                 MH  + +   D            +  
Sbjct: 301 TTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARRIFDGMEVHDTV 360

Query: 99  VQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
             N ++  Y  CG + +A  +F  M  +D+VSWN+++ G A  G   +A+ +F +M +  
Sbjct: 361 CWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRR- 419

Query: 159 IKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
              +  ++  V+S           L +F LMR
Sbjct: 420 ---NTVSWNSVISGFVQNDRFVDALHHFMLMR 448



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 42/221 (19%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I TY++C   L+ + ++  +  ++ +SWNA+I G+ + G G +A+  F EM   G+  D 
Sbjct: 498 ISTYAKCGRILEAKQIFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDE 557

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA--INDANKVF 120
            T   I+ A        EG                     L F Y++     +    + +
Sbjct: 558 VTFVGILSACSHAGLIDEG---------------------LFFFYSMTKEYLLKPVAEHY 596

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           + M +         LLG A  G   EA +L + MQ   I+P+   +  +L AC     + 
Sbjct: 597 ACMVD---------LLGRA--GKLNEAFELVQGMQ---IQPNAGVWGALLGAC----HMH 638

Query: 181 KGLQYFYLMRNDAS-LEPPRAEHYTAIVGLLGRAGFLNEAE 220
           K  +   L     S LEP +A +Y  +  +   AG  +E+E
Sbjct: 639 KNHELAQLAAERLSELEPRKASNYVLLSNISAEAGKWDESE 679



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 83/204 (40%), Gaps = 54/204 (26%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SWN+ +AG    G   +A++ F EM +   D+  + +        +++GF     ++A 
Sbjct: 175 VSWNSALAGLTQSGEMVRAVQFFDEMVK---DMTSWNL--------MLAGFVRTGDLNAA 223

Query: 88  --IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
              F      NV     L+  Y   G I DA  +F  M ER++V+WN +L G  H     
Sbjct: 224 SSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIE 283

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205
           EA +LF++M                                  ++N  S        +T 
Sbjct: 284 EACKLFDEMP---------------------------------IKNSIS--------WTT 302

Query: 206 IVGLLGRAGFLNEAESFINSMSRN 229
           I+  L RAG L EA+  ++ MS N
Sbjct: 303 IISGLARAGKLQEAKDLLDKMSFN 326



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 12/157 (7%)

Query: 98  FVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157
           F  N+ +   A  G +  A ++F +M  R+ V++N++L   A HG   EA  LF+ M   
Sbjct: 19  FRSNKELTRLARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGR 78

Query: 158 EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAE-HYTAIVGLLGRAGFL 216
               +  ++  +++A    G +      F  M       P R E  +T +V    R G L
Sbjct: 79  ----NTVSWNAMIAALSDHGRVADARSLFDRM-------PVRDEFSWTVMVSCYARGGDL 127

Query: 217 NEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
             A   ++ M  +   + Y A++S    +G  + A++
Sbjct: 128 ELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAMK 164



 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 12/139 (8%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           N    N ++   A  G I++A  +F  M  R+ VSWN+++   + HG   +A  LF++M 
Sbjct: 48  NTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRMP 107

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF 215
                 D  ++ V++S     G ++        M  D          Y A++    + G 
Sbjct: 108 VR----DEFSWTVMVSCYARGGDLELARDVLDRMPGDKC-----TACYNAMISGYAKNGR 158

Query: 216 LNEAESFINSMSRNPGPSV 234
            ++A   +  M   P P +
Sbjct: 159 FDDAMKLLREM---PAPDL 174


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 178/302 (58%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C   L+ +NV+  ++ RN + W A++  +   G  E++L  F+ M + G   + +T 
Sbjct: 266 YGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTF 325

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   I+  + G  +HA + K+G+ ++V V+N L+ MY+  G+I+ +  VF+ M  
Sbjct: 326 AVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIY 385

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+++WN+++ G +HHG  ++A+Q+F+ M   E  P+  TF+ VLSA  H G + +G  Y
Sbjct: 386 RDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYY 445

Query: 186 F-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
             +LMRN   +EP   EHYT +V LL RAG L+EAE+F+ +         ++ LL+AC V
Sbjct: 446 LNHLMRN-FKIEPG-LEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHV 503

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N ++  R A+ VL + P+D   Y LLSN+      WD    IR LM  R I+K+PG S
Sbjct: 504 HRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGAS 563

Query: 305 WV 306
           W+
Sbjct: 564 WL 565



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 3/171 (1%)

Query: 6   YSRC---DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           YSRC   + +L   +        +  S+N+++      G GE+A++    M    +  D+
Sbjct: 162 YSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDH 221

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   ++G    I   + G ++HA + + G   + FV + L+ MY  CG + +A  VF  
Sbjct: 222 VTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDG 281

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +  R++V W +L+     +GY  E++ LF  M +    P+  TF V+L+AC
Sbjct: 282 LQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNAC 332



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 115/242 (47%), Gaps = 11/242 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDIDYF 63
           Y +C      +N++ ++  RN +SWN ++AG+ + G+  + L  F  M   Q     +Y 
Sbjct: 60  YVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEY- 118

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
             T+ + A       KEG Q H L+FK G   + +V++ LV MY+ C  +  A +V  ++
Sbjct: 119 VFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTV 178

Query: 124 DER---DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
                 D+ S+NS+L      G   EAV++  +M    +  D  T++ V+  C     + 
Sbjct: 179 PGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQ 238

Query: 181 KGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
            GL+ +  L+R     +       + ++ + G+ G +  A +  + + +N    V+ AL+
Sbjct: 239 LGLRVHARLLRGGLMFDEFVG---SMLIDMYGKCGEVLNARNVFDGL-QNRNVVVWTALM 294

Query: 240 SA 241
           +A
Sbjct: 295 TA 296



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 14/189 (7%)

Query: 81  GKQMHALIF---KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           GK MHA      +    S++   N LV +Y  CG +  A  +F +M  R++VSWN L+ G
Sbjct: 31  GKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAG 90

Query: 138 CAHHGYSREAVQLFEQMQKTEIK-PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
             H G   E + LF+ M   +   P+   F   LSAC H G + +G+Q   L+     + 
Sbjct: 91  YLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVC 150

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV-----YKALLSACQVHGNREIA 251
               +  +A+V +  R   +  A   ++++   PG  V     Y ++L+A    G  E A
Sbjct: 151 HQYVK--SALVHMYSRCSHVELALQVLDTV---PGEHVNDIFSYNSVLNALVESGRGEEA 205

Query: 252 VRSAKRVLD 260
           V   +R++D
Sbjct: 206 VEVLRRMVD 214


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 185/301 (61%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   V+ S++ ++ ++W++++AG+    + E+AL  +   ++  ++ + FT+
Sbjct: 209 YAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTL 268

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   ++   EGKQMHA+I K G+ SNVFV +  V MYA CG++ ++  +FS + E
Sbjct: 269 SSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQE 328

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++  WN+++ G A H   +E + LFE+MQ+  + P+  TF  +LS C H G +++G ++
Sbjct: 329 KNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRF 388

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LMR    L  P   HY+ +V +LGRAG L+EA   I S+   P  S++ +LL++C+V 
Sbjct: 389 FKLMRTTYGL-SPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVC 447

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+A  +AK++ +L P +   +VLLSN+  A   W++    R L+ +  ++K  G SW
Sbjct: 448 KNLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSW 507

Query: 306 V 306
           +
Sbjct: 508 I 508



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 97/189 (51%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C      + V+  +  R+ +SWN +I  +       +AL  F EMR  G     
Sbjct: 105 INAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSE 164

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FTI+S++ A G      E K++H L  K   D N++V   L+ +YA CG INDA +VF S
Sbjct: 165 FTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFES 224

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ++  V+W+S++ G        EA+ L+ + Q+  ++ +  T   V+ AC +   + +G
Sbjct: 225 MQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 284

Query: 183 LQYFYLMRN 191
            Q   ++R 
Sbjct: 285 KQMHAVIRK 293



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 15/171 (8%)

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D+  I  +    G +    E K  H    ++    +V + N L+  Y+ CG +  A +VF
Sbjct: 65  DFIEILQLCARNGAV---MEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVF 121

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC---CHAG 177
             M ER LVSWN+++     +    EA+ +F +M+    K    T   VLSAC   C A 
Sbjct: 122 DGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDAL 181

Query: 178 FIDKGLQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSM 226
              K     + +    SL+      Y  TA++ L  + G +N+A     SM
Sbjct: 182 ECKK----LHCLSMKTSLD---LNLYVGTALLDLYAKCGMINDAVQVFESM 225


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 168/301 (55%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C         ++ +  R+ +S+ AII+G+   G+ E+ L+ F EM+ +GI+ +  T+
Sbjct: 370 YAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATL 429

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   ++G   G   H      G+ ++  + N L+ MYA CG I+ A KVF  M +
Sbjct: 430 ASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHK 489

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R +VSWN++++    HG   EA+ LF+ MQ   +KPD  TF+ ++SAC H+G + +G  +
Sbjct: 490 RGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYW 549

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  +  PR EHY  +V LL RAG   E  SFI  M   P   V+ ALLSAC+V+
Sbjct: 550 FNAMTQDFGI-IPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVY 608

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+    +K++  L P     +VLLSN+  A   WDDA  +R     +G  K PG SW
Sbjct: 609 KNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSW 668

Query: 306 V 306
           +
Sbjct: 669 I 669



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 2/151 (1%)

Query: 23  RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGK 82
           R +N + WN +I  +   G  E+A+  + +M   GI  + FT   ++ A   +    EG+
Sbjct: 80  RPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGR 139

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA-HH 141
           ++H  I ++  +SNV+V   LV  YA CG ++DA +VF  M +RD+V+WNS++ G + H 
Sbjct: 140 EIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHE 199

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           G   E  +L  QMQ  ++ P+ +T + VL A
Sbjct: 200 GSYDEVARLLVQMQ-NDVSPNSSTIVGVLPA 229



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 109/228 (47%), Gaps = 10/228 (4%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI---DYFTITSIVGAIGVISGFKE 80
            +N+++W+A++  +       +AL+ F ++     D+      T+ +++     ++    
Sbjct: 284 VKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLST 343

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G  +H    K G+  ++ V N L+ MYA CG IN A + F+ MD RD VS+ +++ G   
Sbjct: 344 GTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQ 403

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRA 200
           +G S E +++F +MQ + I P+  T   VL AC H      GL Y       A +    A
Sbjct: 404 NGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLA----GLHYGSCSHCYAIICGFTA 459

Query: 201 EHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
           +     A++ +  + G ++ A    + M +  G   +  ++ A  +HG
Sbjct: 460 DTMICNALIDMYAKCGKIDTARKVFDRMHKR-GIVSWNTMIIAYGIHG 506



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 122/254 (48%), Gaps = 11/254 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGF-CNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C    D + V+  +  R+ ++WN++I+GF  + GS ++  +   +M Q  +  +  T
Sbjct: 164 YAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM-QNDVSPNSST 222

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I  ++ A+  ++  + GK++H    + G+  +V V   ++ +Y  C  I+ A ++F  M 
Sbjct: 223 IVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMG 282

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQ---MQKTEIKPDGTTFLVVLSACCHAGFID 180
             ++ V+W++++       + REA++LF Q   ++   I     T   V+  C +   + 
Sbjct: 283 IVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLS 342

Query: 181 KG-LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
            G   + Y +++   L+         ++ +  + G +N A  F N M      S + A++
Sbjct: 343 TGTCLHCYAIKSGFVLDLMVG---NTLLSMYAKCGIINGAMRFFNEMDLRDAVS-FTAII 398

Query: 240 SACQVHGNREIAVR 253
           S    +GN E  +R
Sbjct: 399 SGYVQNGNSEEGLR 412


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 179/304 (58%), Gaps = 2/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    D + V+  +  R+ + WNA+ +G+      E++LK + +++ + +  + 
Sbjct: 499 IDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNE 558

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  +++ A   I+  + G+Q H  + K+G D + FV N LV MYA CG+I +++K FSS
Sbjct: 559 FTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSS 618

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            ++RD+  WNS++   A HG + +A+++FE+M    +KP+  TF+ +LSAC HAG +D G
Sbjct: 619 TNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLG 678

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             +F  M +   +EP   +HY  +V LLGRAG + EA+ F+  M   P   V+++LLSAC
Sbjct: 679 FHHFESM-SKFGIEPG-IDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSAC 736

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +V G+ E+   +A+  +   P D   Y+LLSN+  +   W     +R  M    + K+PG
Sbjct: 737 RVSGHVELGTYAAEMAISCDPADSGSYILLSNIFASKGMWASVRMVREKMDMSRVVKEPG 796

Query: 303 YSWV 306
           +SW+
Sbjct: 797 WSWI 800



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 96/167 (57%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  ++ +  ++W AIIAG+  LG  E +LK F++MR+  +  D + I+S++ A  ++  
Sbjct: 211 IFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEF 270

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + GKQ+H  + + G+D +V V N ++  Y  C  +    K+F+ + ++D+VSW +++ G
Sbjct: 271 LEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAG 330

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           C  + +  +A+ LF +M +   KPD      VL++C     + KG Q
Sbjct: 331 CMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQ 377



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 135/275 (49%), Gaps = 5/275 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++CDS  + + V+  V   N +S+NA+I G+       +AL  F EMR +       T 
Sbjct: 401 YAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTF 460

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++G    +   +   Q+H LI K G   + F  + L+ +Y+ C  + DA  VF  + +
Sbjct: 461 VSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYD 520

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+V WN++  G +    + E+++L++ +Q + +KP+  TF  V++A  +   +  G Q+
Sbjct: 521 RDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQF 580

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              +      + P   +  ++V +  + G + E+    +S ++    + + +++S    H
Sbjct: 581 HNQVIKMGLDDDPFVTN--SLVDMYAKCGSIEESHKAFSSTNQR-DIACWNSMISTYAQH 637

Query: 246 GNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
           G+   A+   +R++   + PN      LLS  S A
Sbjct: 638 GDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHA 672



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 99/187 (52%), Gaps = 2/187 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSE-MRQAGIDIDYFT 64
           YS+ +   D Q ++ ++  RN ++W+++++ +   G   +AL  F   MR      + + 
Sbjct: 97  YSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYI 156

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + S+V A   +    +  Q+H  + K G+  +V+V   L+  YA  G +++A  +F  + 
Sbjct: 157 LASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLK 216

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +  V+W +++ G A  G S  +++LF QM++ ++ PD      VLSAC    F++ G Q
Sbjct: 217 VKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQ 276

Query: 185 -YFYLMR 190
            + Y++R
Sbjct: 277 IHGYVLR 283



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 88/162 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + +++ +  ++ +SW  +IAG         A+  F EM + G   D F  
Sbjct: 300 YLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGC 359

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ + G +   ++G+Q+HA   K+  D++ FV+N L+ MYA C ++ +A KVF  +  
Sbjct: 360 TSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAA 419

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
            ++VS+N+++ G +      EA+ LF +M+ +   P   TF+
Sbjct: 420 INVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFV 461



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 100/199 (50%), Gaps = 7/199 (3%)

Query: 82  KQMHALIFKIGY-DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           K++HA I  +G+   +VF+ N L+  Y+     +DA K+F +M  R+LV+W+S++     
Sbjct: 71  KKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQ 130

Query: 141 HGYSREAVQLFEQ-MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR 199
           HGYS EA+ LF + M+    KP+      V+ AC   G + + LQ    +     ++   
Sbjct: 131 HGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVY 190

Query: 200 AEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR--SAKR 257
               T+++    + G+++EA    + + +      + A+++     G  E++++  +  R
Sbjct: 191 VG--TSLIDFYAKRGYVDEARLIFDGL-KVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMR 247

Query: 258 VLDLWPNDPAIYVLLSNVS 276
             D++P+   I  +LS  S
Sbjct: 248 EGDVYPDRYVISSVLSACS 266


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 175/302 (57%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQIS-WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C  + D ++ +  +   + +  W A+I G    G  E+AL  +S M + G+   Y T
Sbjct: 371 YAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLT 430

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +TS++ A   ++  + GKQ+HA I K G+     V   L  MY+ CG + D+  VF  M 
Sbjct: 431 VTSVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMP 490

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +RD++SWNS++ G + HG  R+A+ LFE+M+   I PD  TF+ VL AC H G +D+G  
Sbjct: 491 DRDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLVDRGWF 550

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF  M  D  L  P+ +HY  IV +L RAG L EA+ FI S++ + G  +++ +L AC+ 
Sbjct: 551 YFRAMSKDYGL-IPKLDHYACIVDILSRAGQLKEAKDFIESITIDHGTCLWRIVLGACRS 609

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
             + ++   + +++++L   D + Y+LLSN+  A   W+D   +R LM  RG+ K PG S
Sbjct: 610 LRDFDVGAYAGEQLMELGTEDSSAYILLSNIYAAQRKWNDVERVRHLMRLRGVSKDPGCS 669

Query: 305 WV 306
           WV
Sbjct: 670 WV 671



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 1/183 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++ +       V+ S + RN I+W+A+I G+   G  + A   F +M  AG     
Sbjct: 267 VTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTE 326

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT   I+ A   +     GKQ H L+ K+G++  V+V++ LV MYA CG   DA   F  
Sbjct: 327 FTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQ 386

Query: 123 M-DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           + D  D+V W +++ G   +G   EA+ L+ +M K  + P   T   VL AC     ++ 
Sbjct: 387 LYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEP 446

Query: 182 GLQ 184
           G Q
Sbjct: 447 GKQ 449



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 135/278 (48%), Gaps = 7/278 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDIDYFT 64
           Y +  +  D + V+  +  RN +SW A+++G+      E+A + F  M Q   ++ + F 
Sbjct: 168 YCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFV 227

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            T+++ A+ V  G   G Q+H L+ K G    V V+N LV MYA    ++ A  VF S  
Sbjct: 228 ATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSK 287

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ER+ ++W++++ G A +G +  A  +F QM      P   TF+ +L+A    G +  G Q
Sbjct: 288 ERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQ 347

Query: 185 YFYLMRNDASLEPPRAEHY-TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
              LM     L   R  +  +A+V +  + G   +A+   + +       ++ A+++   
Sbjct: 348 AHGLM---VKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHV 404

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDC 281
            +G  E A+    R +D     P+ Y+ +++V +A  C
Sbjct: 405 QNGEHEEALMLYSR-MDKEGVMPS-YLTVTSVLRACAC 440



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT-----SIVGAIGVISGFK 79
           R+  SWN+++    N  S  Q L   S  R      D    T     ++  A   +    
Sbjct: 82  RDVASWNSLL----NPLSRHQPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSAS 137

Query: 80  EGKQMHALIFKIGYDS---NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            G   HA   K+   S   NVFV   L+ MY   GAI+DA +VF  M  R+ VSW +++ 
Sbjct: 138 AGAVAHAFACKLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVS 197

Query: 137 GCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSA 172
           G A    S EA +LF  M Q+  ++ +      VLSA
Sbjct: 198 GYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLSA 234


>gi|449442815|ref|XP_004139176.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Cucumis sativus]
          Length = 838

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/290 (35%), Positives = 170/290 (58%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++      + +S   I+AGF + G  E+A++ F +M + GI+ID   ++ ++G  G  +
Sbjct: 245 KIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADT 304

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             + G+Q+H+ + K  +  N FV N L+ MY+ CGA++++ KVF  M ER+ V+WNS++ 
Sbjct: 305 SLRLGQQVHSFVVKKNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSVTWNSMIA 364

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
             A HG + +A+QL+E MQ    KP   TFL +L AC HAG + KG+++   M  D  + 
Sbjct: 365 AFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKSMTKDHGMN 424

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
            PR+EH+  +V +LGRAG L+EA +FI  +   PG  V++ALL AC ++G+ +I   +A+
Sbjct: 425 -PRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLYGDSKIGKYAAE 483

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +    P+ P  YVLL+N+  +   W +       M   G  K+ G SW+
Sbjct: 484 HLFSETPDSPVPYVLLANIYSSEGNWKERARTIRKMKEVGTAKETGISWI 533



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 134/278 (48%), Gaps = 8/278 (2%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYF 63
           +Y +C        V+  +  RN I+W A+I+G    G  E +LK F EM   G ++ +  
Sbjct: 131 SYFKCGCVGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVEPNSL 190

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T  S++ A   +   KEG Q+H LI K+G  S++ + + L+ MY+  G I +A K+F   
Sbjct: 191 TYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIFELA 250

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           +E D+VS   +L G  H+G   EA+Q+F +M K  I+ DG    VVL        +  G 
Sbjct: 251 EELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQ 310

Query: 184 Q-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           Q + ++++ +    P  +     ++ +  + G L+E+    + M R      + ++++A 
Sbjct: 311 QVHSFVVKKNFICNPFVS---NGLINMYSKCGALDESMKVFDRM-RERNSVTWNSMIAAF 366

Query: 243 QVHGN--REIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
             HG+  + + +    ++    P D     LL   S A
Sbjct: 367 ARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHA 404



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 38/177 (21%)

Query: 81  GKQMHALIFKIGYDSN----VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
           G  +HA I K    SN    V + N L+ MY  CG + DA KVF  M  RD +SWN+L+ 
Sbjct: 64  GSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEMITRDTISWNALIG 123

Query: 137 GCAHHGYSR-------EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           G   +G S          +Q+F +M +  +     T+  V+S     G+ +  L+ F  M
Sbjct: 124 GFVRNGNSYFKCGCVGLGMQVFYEMGERNV----ITWTAVISGLAQNGYHEHSLKLFKEM 179

Query: 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
            +  S+EP    + + +    G                        +AL   CQ+HG
Sbjct: 180 MSYGSVEPNSLTYLSLLTACSG-----------------------LEALKEGCQIHG 213


>gi|297741017|emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/305 (34%), Positives = 175/305 (57%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC        ++  +  ++ I+WN+II+G C++   E+A     EM   GI+ +Y
Sbjct: 334 ITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNY 393

Query: 63  FTITSIVGAIGVISGFKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            TI S++     ++  + GK+ H  +  +  +  ++ + N LV MYA  G + +A +VF 
Sbjct: 394 VTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFD 453

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + ERD +++ S++ G    G  + A++LFE+M   +IKPD  T + VLSAC H+G + +
Sbjct: 454 MLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQ 513

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G   F  MR+   L P   EH+  +  L GRAG LN+A+  I +M   P P+++  L+ A
Sbjct: 514 GQLLFEKMRSLYGLTP-HLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGA 572

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++H N EI   +A+++L++ P +P  YVL++N+  A  CW+    +R  M + G+RK P
Sbjct: 573 CRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAP 632

Query: 302 GYSWV 306
           G +WV
Sbjct: 633 GCAWV 637



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 113/242 (46%), Gaps = 8/242 (3%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F ++++     N I WN I  G+   G+ + AL+  S+MR+ G  +D   +   +GA   
Sbjct: 245 FGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSH 304

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           I   K GK++H+   +  +     V+N L+ MY+ C  +  A  +F  M+ + L++WNS+
Sbjct: 305 IGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSI 364

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + GC H   S EA  L  +M    I+P+  T   VL  C     +  G ++   M     
Sbjct: 365 ISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRRED 424

Query: 195 LEPPRAEH---YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
            +    +H   + A+V +  R+G + EA    + +        Y ++++   + G  + A
Sbjct: 425 FK----DHLLLWNALVDMYARSGKVLEARRVFDMLGER-DKMTYTSMIAGYGMQGEGQAA 479

Query: 252 VR 253
           ++
Sbjct: 480 LK 481



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 4/171 (2%)

Query: 7   SRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR----QAGIDIDY 62
           + C++    Q  ++SV      S    +  F + G+   A K  S +R     A  D+  
Sbjct: 41  ASCNALESAQETFTSVDASMIDSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIV 100

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             I+S++ +   +    EG+Q+H  I  +G++ +  +  +LV  Y+    + DA+ +  +
Sbjct: 101 HPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITEN 160

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            +      WN L+     +G+ ++A+  ++QM K  I+PD  T+  VL AC
Sbjct: 161 SNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKAC 211



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 18/176 (10%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS  +  +D   +  +    +   WN +I+ +   G  ++AL  + +M + GI  D FT 
Sbjct: 145 YSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTY 204

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-- 123
            S++ A G       GK++H  I                 +YA  G  N+A ++F SM  
Sbjct: 205 PSVLKACGEELDLGFGKEVHESIN--------------ASLYASMGMWNEAFELFGSMWA 250

Query: 124 --DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
              E +++ WN++  G    G  + A++L  QM+K     D    ++ L AC H G
Sbjct: 251 EDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIG 306


>gi|449482847|ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 833

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+     +   ++      + +S   I+AGF + G  E+A++ F +M + GI+ID   +
Sbjct: 229 YSKSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVV 288

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + ++G  G  +  + G+Q+H+ + K  +  N FV N L+ MY+ CGA++++ KVF  M E
Sbjct: 289 SVVLGVFGADTSLRLGQQVHSFVVKRNFICNPFVSNGLINMYSKCGALDESMKVFDRMRE 348

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ V+WNS++   A HG + +A+QL+E MQ    KP   TFL +L AC HAG + KG+++
Sbjct: 349 RNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEF 408

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M  D  +  PR+EH+  +V +LGRAG L+EA +FI  +   PG  V++ALL AC ++
Sbjct: 409 LKSMTKDHGMN-PRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLY 467

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ +I   +A+ +    P+ P  YVLL+N+  +   W +       M   G  K+ G SW
Sbjct: 468 GDSKIGKYAAEHLFSETPDSPVPYVLLANIYSSEGNWKERARTIRKMKEVGTAKETGISW 527

Query: 306 V 306
           +
Sbjct: 528 I 528



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 130/266 (48%), Gaps = 8/266 (3%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIVGAIGVI 75
            V+  +  RN I+W A+I+G    G  E +LK F EM   G ++ +  T  S++ A   +
Sbjct: 138 QVFYEMGERNVITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVEPNSLTYLSLLTACSGL 197

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              KEG Q+H LI K+G  S++ + + L+ MY+  G I +A K+F   +E D+VS   +L
Sbjct: 198 EALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIFELAEELDMVSLTVIL 257

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G  H+G   EA+Q+F +M K  I+ DG    VVL        +  G Q + ++++ +  
Sbjct: 258 AGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQQVHSFVVKRNFI 317

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN--REIAV 252
             P  +     ++ +  + G L+E+    + M R      + ++++A   HG+  + + +
Sbjct: 318 CNPFVS---NGLINMYSKCGALDESMKVFDRM-RERNSVTWNSMIAAFARHGDALKALQL 373

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKA 278
               ++    P D     LL   S A
Sbjct: 374 YEDMQLEGAKPTDVTFLSLLHACSHA 399



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 33/172 (19%)

Query: 81  GKQMHALIFKIGYDSN----VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
           G  +HA I K    SN    V + N L+ MY  CG + DA KVF  M  RD +SWN+L+ 
Sbjct: 64  GSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEMVTRDTISWNALIG 123

Query: 137 GCAHHG--YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           G   +G  ++   +Q+F +M +  +     T+  V+S     G+ +  L+ F  M +  S
Sbjct: 124 GFVRNGKFFAGLGMQVFYEMGERNV----ITWTAVISGLAQNGYHEHSLKLFKEMMSYGS 179

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
           +EP    + + +    G                        +AL   CQ+HG
Sbjct: 180 VEPNSLTYLSLLTACSG-----------------------LEALKEGCQIHG 208


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 178/306 (58%), Gaps = 6/306 (1%)

Query: 6   YSRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDID 61
           Y++C S    ++++ S+  + +N ++W  +I G+   G    ALK F+++  ++  +  +
Sbjct: 422 YAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPN 481

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNV-FVQNRLVFMYAICGAINDANKVF 120
            FT++  + A   +   + G+Q+HA   +   +S V +V N L+ MY+  G I+ A  VF
Sbjct: 482 AFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVF 541

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            +M  R++VSW SL+ G   HG   EA+ LF+QMQK     DG TFLVVL AC H+G +D
Sbjct: 542 DNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVD 601

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +G+ YF+ M     + P  AEHY  +V LLGRAG LNEA   I +MS  P   V+ ALLS
Sbjct: 602 QGMIYFHDMVKGFGITPG-AEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLS 660

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           A ++H N E+   +A ++ +L   +   Y LLSN+      W D   IR+LM + GIRK+
Sbjct: 661 ASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKR 720

Query: 301 PGYSWV 306
           PG SW+
Sbjct: 721 PGCSWI 726



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTR---NQISWNAIIAGFCNLGSGEQALKCFSEM---RQA 56
           +  Y RC +  D   ++  V  R   + +SWN+I+A +   G    AL+    M      
Sbjct: 169 VAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSL 228

Query: 57  GIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
            +  D  T+ +I+ A   +   + GKQ+H    + G   +VFV N LV MYA C  +N+A
Sbjct: 229 KLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEA 288

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
           NKVF  + ++D+VSWN+++ G +  G    A+ LF+ MQ+ +IK D  T+  V++     
Sbjct: 289 NKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQK 348

Query: 177 GFIDKGLQYFYLMRNDASLEP 197
           G   + L  F  M+    LEP
Sbjct: 349 GHGFEALDVFRQMQL-YGLEP 368



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 123/238 (51%), Gaps = 15/238 (6%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           I+W+A+IAG+   G G +AL  F +M+  G++ +  T+ S++     +     GKQ HA 
Sbjct: 336 ITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAY 395

Query: 88  IFKIGYDSN-------VFVQNRLVFMYAICGAINDANKVFSSMDERD--LVSWNSLLLGC 138
           + K   + N       + V N L+ MYA C +   A  +F S++ +D  +V+W  ++ G 
Sbjct: 396 VIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGY 455

Query: 139 AHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASL 195
           A HG + +A++LF Q+  QKT +KP+  T    L AC   G +  G Q + Y +RN+   
Sbjct: 456 AQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENES 515

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           E     +   ++ +  ++G ++ A +  ++M      S + +L++   +HG  E A+ 
Sbjct: 516 EVLYVGN--CLIDMYSKSGDIDAARAVFDNMKLRNVVS-WTSLMTGYGMHGRGEEALH 570



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 6/161 (3%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WNA+I     LG  +  L  + +M++ G   D++T   ++ A G I   + G  +HA++ 
Sbjct: 95  WNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVC 154

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER---DLVSWNSLLLGCAHHGYSRE 146
             G  SNVF+ N +V MY  CGA++DA+++F  + ER   D+VSWNS+L      G SR 
Sbjct: 155 ANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRT 214

Query: 147 AVQLFEQM---QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           A+++  +M      +++PD  T + +L AC     +  G Q
Sbjct: 215 ALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQ 255


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 178/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + ++  +++R+ ++W+A+I+G+       +AL  FSEM+ A ++ +  T+
Sbjct: 265 YAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTM 324

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A  V+   + GK +H+ I +      + +   LV  YA CG I+DA + F SM  
Sbjct: 325 VSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPV 384

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++  +W +L+ G A +G  REA++LF  M+K  I+P   TF+ VL AC H+  +++G ++
Sbjct: 385 KNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRH 444

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  ++ PRAEHY  +V LLGRAG ++EA  FI +M   P   +++ALLS+C VH
Sbjct: 445 FDSMTQDYGIK-PRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVH 503

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N EI   + K+++ L P+    Y+LLSN+  +   W +A  IR  M +RGI K PG S 
Sbjct: 504 KNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSL 563

Query: 306 V 306
           +
Sbjct: 564 I 564



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 4/225 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+ C      Q ++ +V     + WNAII  +   G+  + ++ F  M + G+  D 
Sbjct: 161 IHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDE 220

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S+V A G I   K GK +   + + G   N  +   L+ MYA CG +  A ++F  
Sbjct: 221 ITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDG 280

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD+V+W++++ G       REA+ LF +MQ  E++P+  T + VLSAC   G ++ G
Sbjct: 281 MQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETG 340

Query: 183 -LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
              + Y+ R   SL        TA+V    + G +++A     SM
Sbjct: 341 KWVHSYIRRKRLSLTIILG---TALVDFYAKCGCIDDAVEAFESM 382



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 119/254 (46%), Gaps = 20/254 (7%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
           +N ++    + G  E AL  F EM   A +  D  T+   + +   +     G+ + A  
Sbjct: 86  YNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYA 145

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
            K G  ++ FV + L+ MYA C  +  A  +F +++E  +V WN+++     +G   E V
Sbjct: 146 VKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVV 205

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAG------FIDKGLQYFYLMRNDASLEPPRAEH 202
           ++F+ M +  +  D  T + V++AC   G      ++ + +    L+RN   +       
Sbjct: 206 EMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLM------- 258

Query: 203 YTAIVGLLGRAGFLNEAESFINSM-SRNPGPSVYKALLSA-CQVHGNRE-IAVRSAKRVL 259
            TA++ +  + G L +A    + M SR+     + A++S   Q    RE +A+ S  ++ 
Sbjct: 259 -TALIDMYAKCGELGKARRLFDGMQSRD--VVAWSAMISGYTQADQCREALALFSEMQLA 315

Query: 260 DLWPNDPAIYVLLS 273
           ++ PND  +  +LS
Sbjct: 316 EVEPNDVTMVSVLS 329


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 176/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    + Q V+  +  +N ISW+A+I GF   G+  +A+  F ++R++  ++D F +
Sbjct: 253 YAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVL 312

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + ++G    ++  ++GKQMH  I K+    ++ V N ++ MY  CG   +A ++FS M  
Sbjct: 313 SIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQV 372

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++VSW  ++ G   HG   +A+ LF +MQ   I+ D   +L +LSAC H+G I +  +Y
Sbjct: 373 RNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEY 432

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  + N+  ++ P  EHY  +V +LGRAG L EA++ I +M   P   +++ LLSAC+VH
Sbjct: 433 FSRLCNNHQMK-PNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVH 491

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN EI     + +  +  ++P  YV++SN+      W +   +R L+  +G++K+ G SW
Sbjct: 492 GNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSW 551

Query: 306 V 306
           V
Sbjct: 552 V 552



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 141/274 (51%), Gaps = 8/274 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C      + V++ +  RN +SWNA+IAG  + G+G ++L  F  M+  G   D 
Sbjct: 147 IDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDE 206

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNV--FVQNRLVFMYAICGAINDANKVF 120
           FT TS + A G +   + G Q+HA +   G+  ++   + + +V +YA CG + +A KVF
Sbjct: 207 FTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVF 266

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             +++++L+SW++L+ G A  G   EA+ LF Q++++    DG    +++        ++
Sbjct: 267 DRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVE 326

Query: 181 KGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           +G Q + Y+++  + L+   A    +I+ +  + G   EAE   + M      S +  ++
Sbjct: 327 QGKQMHCYILKVPSGLDISVA---NSIIDMYLKCGLTEEAERLFSEMQVRNVVS-WTVMI 382

Query: 240 SACQVHGNREIAVRSAKRV-LDLWPNDPAIYVLL 272
           +    HG  E A+    R+ LD    D   Y+ L
Sbjct: 383 TGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLAL 416



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 123/246 (50%), Gaps = 3/246 (1%)

Query: 3   ILTYSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I  Y +C S +D   +V+  +  RN +SW A++ G+   G+ + +L    EM  +G+  +
Sbjct: 46  IDMYGKC-SRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPN 104

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            FT ++ + A G +   + G Q+H +  K G++    V N  + MY+ CG I  A +VF+
Sbjct: 105 EFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFN 164

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M  R+LVSWN+++ G  H G  R+++ LF++MQ     PD  TF   L AC   G I  
Sbjct: 165 KMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRG 224

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G Q    +         R    +AIV L  + G+L EA+   + + +    S + AL+  
Sbjct: 225 GTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLIS-WSALIQG 283

Query: 242 CQVHGN 247
               GN
Sbjct: 284 FAQEGN 289



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 60/107 (56%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F +G Q+HA    +G+  ++ + N L+ MY  C  ++ A  VF  M ER++VSW +L+ G
Sbjct: 20  FDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCG 79

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
               G ++ ++ L  +M  + +KP+  TF   L AC   G ++ G+Q
Sbjct: 80  YLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 174/304 (57%), Gaps = 4/304 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +SRC      +  +  ++ R++ISW+A+I G+   G   +AL+ F +M++  I    
Sbjct: 243 ISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRK 302

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F + S++ A   +    +G+ +H    +     +  +   LV MYA CG I+ A +VF  
Sbjct: 303 FVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEK 362

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  +++ SWN+++ G A HG + +A+ LF +M   +I P+  TF+ VL+AC H G + KG
Sbjct: 363 MSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKG 419

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L  F  MR +  +EP + EHY  IV LLGRAG L EAE  ++S+   P P+V+ ALL AC
Sbjct: 420 LTIFNSMRKEYGVEP-QIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGAC 478

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + HGN E+  R  K +L+L P +   Y LLSN+      W++ G++R LM  RGI+  PG
Sbjct: 479 RKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPG 538

Query: 303 YSWV 306
            S +
Sbjct: 539 TSII 542



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 44/241 (18%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           + + WNA+I G+   G  E A + F  M                                
Sbjct: 203 DAVCWNAMIDGYLRFGEVEAARELFEGMPDR----------------------------- 233

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
                    S +   N ++  ++ CG +  A + F  M ERD +SW++++ G    G   
Sbjct: 234 ---------SMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFM 284

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYT 204
           EA+++F QMQK +I+P       VLSAC + G +D+G   + Y  RN   L+       T
Sbjct: 285 EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLG---T 341

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
           ++V +  + G ++ A      MS N   S + A++    +HG  E A+    + +D+ PN
Sbjct: 342 SLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAEDAIDLFSK-MDINPN 399

Query: 265 D 265
           +
Sbjct: 400 E 400



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICG-----AINDANKVFSSMDERDLVSWNSLLL 136
           KQ HALI + G+  + ++   LV  YA        +   + +VF  + + ++  WN ++ 
Sbjct: 51  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 110

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            C  +    +A+ L+ +M     +P+  T+  VL AC  AG + +G+Q
Sbjct: 111 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQ 158


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 177/304 (58%), Gaps = 7/304 (2%)

Query: 9   CDSSLD-FQNVYSS---VRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           CD +L+ F  +  S    R R N +SW+AII GF + G  ++AL+ F  M+ A I  +  
Sbjct: 260 CDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAV 319

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           TI++++     ++    G+++H  + +    +N+ V N LV MYA CG + + + +F   
Sbjct: 320 TISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKT 379

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           + +DL+SWNS++ G   HG    A++ F+QM K   KPDG TF+ VLS+C H+G + +G 
Sbjct: 380 ERKDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGR 439

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           + F  M     +E P+ EHY  +V LLGRAG L EA   + +M   P   V+ ALL++C+
Sbjct: 440 RLFDQMLKKYRIE-PQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCR 498

Query: 244 VHGNREIAVRSAKRVLDLWPND-PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +H N EIA  +A  + +L   +    Y+LLSN+  A+  W+D+  +RT    +G++K PG
Sbjct: 499 MHNNTEIAEETASHLFNLSHRETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKNPG 558

Query: 303 YSWV 306
            SW+
Sbjct: 559 QSWI 562



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 95/188 (50%), Gaps = 5/188 (2%)

Query: 9   CDSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           C+ +L+ FQ + S     N ++W ++I+ +   G  E+A++ F  MR  G+++    +  
Sbjct: 124 CNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAV 183

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           ++     +  F   K +H    K G++   FV++ L+ +Y   G +N A  +F  M  + 
Sbjct: 184 VISICADLGAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKS 243

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKT----EIKPDGTTFLVVLSACCHAGFIDKGL 183
           L SWN+L+   A  G   EA+++F Q++++     ++P+  ++  ++      G   + L
Sbjct: 244 LASWNALITSHAEAGLCDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEAL 303

Query: 184 QYFYLMRN 191
           + F  M++
Sbjct: 304 ELFRRMQH 311



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 78/138 (56%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           MR+ G   D FT   ++ A   +  F  GK +H  + ++G+ S++ V N L+ MYA  G 
Sbjct: 33  MRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGR 92

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           + DA  +F  M  R  +SWN+++   A +     A+++F++M+   ++P+  T+  ++S+
Sbjct: 93  MRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISS 152

Query: 173 CCHAGFIDKGLQYFYLMR 190
              +G+ ++ ++ F LMR
Sbjct: 153 YARSGWHEEAMELFGLMR 170



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    +   ++     ++ ISWN++I G+   G G  AL+ F +M + G   D  T 
Sbjct: 363 YAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTF 422

Query: 66  TSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +++ +        EG+++   ++ K   +  +     +V +    G + +A+++  +M 
Sbjct: 423 VAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMP 482

Query: 125 -ERDLVSWNSLLLGCAHH 141
              +   W +LL  C  H
Sbjct: 483 VAPNACVWGALLNSCRMH 500


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 177/300 (59%), Gaps = 1/300 (0%)

Query: 7   SRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT 66
           ++C    + + +++ ++ +N+ISW+A+I G+   G  ++AL+ F+ M++  I    F ++
Sbjct: 238 AKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLS 297

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
           S++ A   +    +G+ +HA +       +  +   LV MYA CG ++ A  VF  M+++
Sbjct: 298 SVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKK 357

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
           ++ +WN+++ G   HG + +A++LF +MQK + +P+G T L VLSAC H+G +D+GL+ F
Sbjct: 358 EVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIF 417

Query: 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
             M     +EP   EHY  +V LLGRAG L EAE  + SM   P  +V+ ALL AC+ HG
Sbjct: 418 NSMEEVYGIEPG-MEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHG 476

Query: 247 NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + E+  R  K +L+L P +   Y LLSN+      WDD  ++R LM  RG++   G S +
Sbjct: 477 DVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMI 536



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 5/161 (3%)

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           D NV   N +V   A CG I +A ++F+ M E++ +SW++++ G    GY +EA+++F  
Sbjct: 224 DKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNV 283

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGR 212
           MQ+ EI+P       VL+AC + G +D+G   + Y+  N  S +       TA+V +  +
Sbjct: 284 MQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLG---TALVDMYAK 340

Query: 213 AGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            G L+ A      M +      + A++    +HG  E A+ 
Sbjct: 341 CGRLDMAWDVFEKMEKKE-VFTWNAMICGLGMHGRAEDAIE 380



 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYA--ICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           KQ+HA+  + G+  + +V   LV  YA      +N A KVF  +   ++  +N ++ GC 
Sbjct: 47  KQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCL 106

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +    +A+  + +M     +P+  T+  +  AC  A   ++G+Q
Sbjct: 107 QNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQ 151


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/288 (36%), Positives = 168/288 (58%), Gaps = 1/288 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            +++ +  RN  SW ++I G+   G  ++A+  F EM  AG+  +  T+ +++ A   + 
Sbjct: 200 KLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMG 259

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G+++H    + GY+ N+ V N L+ MY  CG + DA ++F +M+ER +VSW++++ 
Sbjct: 260 NLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIA 319

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A HG + +A+ LF +M  T +KP+  TF+ +L AC H G ++KG +YF  M  D  + 
Sbjct: 320 GLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGI- 378

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
            PR EHY  +V L  RAG L EA  FI +M   P   V+ ALL  C+VH N ++A  + +
Sbjct: 379 VPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATR 438

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
            +  L P +   YV+LSN+      W+D   +R LM +RG++K PG+S
Sbjct: 439 HLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWS 486



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 41/290 (14%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQI-------SWNAIIAGFCNLGSGEQALKCFSEM 53
           L  L  SR  S   F + +S  +   Q+        WN  +  F    S   A+  F  +
Sbjct: 45  LSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRL 104

Query: 54  RQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113
           R+  I  D++T + ++ A   +   + GK +H  + K+G  SN+F+QN +V +YA+CG I
Sbjct: 105 REFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEI 164

Query: 114 NDANKVFSSMDERDLVSWN-------------------------------SLLLGCAHHG 142
             A KVF  M +RD+++WN                               S++ G A  G
Sbjct: 165 GVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCG 224

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEH 202
            S+EA+ LF +M+   + P+  T + VL AC   G +  G +  +   N +  E      
Sbjct: 225 KSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLG-RRIHDFSNRSGYE-KNIRV 282

Query: 203 YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
              ++ +  + G L +A    ++M      S + A+++    HG  E A+
Sbjct: 283 CNTLIDMYVKCGCLEDACRIFDNMEERTVVS-WSAMIAGLAAHGRAEDAL 331



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 5/196 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D   ++ ++  R  +SW+A+IAG    G  E AL  F++M   G+  +  T 
Sbjct: 290 YVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTF 349

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             I+ A   +   ++G++  A + +  G    +     +V +++  G + +A++   +M 
Sbjct: 350 IGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMP 409

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-CHAGFIDKG 182
              + V W +LL GC  H   + A +    + K +   DG  + VVLS     AG  +  
Sbjct: 410 IAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDG--YYVVLSNIYAEAGRWEDV 467

Query: 183 LQYFYLMRNDASLEPP 198
            +   LMR+    + P
Sbjct: 468 ARVRKLMRDRGVKKTP 483



 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 11/123 (8%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           E KQ+HA + K     +    +R+  + A   + + A  +F  +D  ++  WN+ L   A
Sbjct: 30  ELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFA 89

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA----------GFIDK-GLQYFYL 188
                 +A+ LF ++++ +I PD  T   VL AC             G+++K GLQ    
Sbjct: 90  EGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMF 149

Query: 189 MRN 191
           ++N
Sbjct: 150 LQN 152


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/305 (34%), Positives = 175/305 (57%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC        ++  +  ++ I+WN+II+G C++   E+A     EM   GI+ +Y
Sbjct: 379 ITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNY 438

Query: 63  FTITSIVGAIGVISGFKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            TI S++     ++  + GK+ H  +  +  +  ++ + N LV MYA  G + +A +VF 
Sbjct: 439 VTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFD 498

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + ERD +++ S++ G    G  + A++LFE+M   +IKPD  T + VLSAC H+G + +
Sbjct: 499 MLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQ 558

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G   F  MR+   L P   EH+  +  L GRAG LN+A+  I +M   P P+++  L+ A
Sbjct: 559 GQLLFEKMRSLYGLTP-HLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGA 617

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++H N EI   +A+++L++ P +P  YVL++N+  A  CW+    +R  M + G+RK P
Sbjct: 618 CRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAP 677

Query: 302 GYSWV 306
           G +WV
Sbjct: 678 GCAWV 682



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 113/242 (46%), Gaps = 8/242 (3%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F ++++     N I WN I  G+   G+ + AL+  S+MR+ G  +D   +   +GA   
Sbjct: 290 FGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSH 349

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           I   K GK++H+   +  +     V+N L+ MY+ C  +  A  +F  M+ + L++WNS+
Sbjct: 350 IGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSI 409

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + GC H   S EA  L  +M    I+P+  T   VL  C     +  G ++   M     
Sbjct: 410 ISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRRED 469

Query: 195 LEPPRAEH---YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
            +    +H   + A+V +  R+G + EA    + +        Y ++++   + G  + A
Sbjct: 470 FK----DHLLLWNALVDMYARSGKVLEARRVFDMLGER-DKMTYTSMIAGYGMQGEGQAA 524

Query: 252 VR 253
           ++
Sbjct: 525 LK 526



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 95/222 (42%), Gaps = 9/222 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS  +  +D   +  +    +   WN +I+ +   G  ++AL  + +M + GI  D FT 
Sbjct: 145 YSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTY 204

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A G       GK++H  I       ++ V N L+ MY  CG +  A  +F  + E
Sbjct: 205 PSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPE 264

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSWNS++   A  G   EA +LF  M   +I+ +   +  +       G     L+ 
Sbjct: 265 RDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALEL 324

Query: 186 FYLMRNDASLEPPRAEHYTAIVGL-----LGRAGFLNEAESF 222
              MR   S      +    I+GL     +G A    E  SF
Sbjct: 325 LSQMRKCGS----HLDSVALIIGLGACSHIGDAKLGKEIHSF 362



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 4/171 (2%)

Query: 7   SRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR----QAGIDIDY 62
           + C++    Q  ++SV      S    +  F + G+   A K  S +R     A  D+  
Sbjct: 41  ASCNALESAQETFTSVDASMIDSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIV 100

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             I+S++ +   +    EG+Q+H  I  +G++ +  +  +LV  Y+    + DA+ +  +
Sbjct: 101 HPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITEN 160

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            +      WN L+     +G+ ++A+  ++QM K  I+PD  T+  VL AC
Sbjct: 161 SNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKAC 211


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 115/332 (34%), Positives = 184/332 (55%), Gaps = 32/332 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWN-------------------------------AII 34
           Y++C S LD   V+  +  R+ ISWN                               A+I
Sbjct: 164 YTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMI 223

Query: 35  AGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYD 94
           +G+  LGS   AL  F +M+  G++ D  +I S++ A   +   + GK +H    + G  
Sbjct: 224 SGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLL 283

Query: 95  SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
               + N L+ MY+ CG I  A ++F  M + D++SW++++ G A+HG +REA++LF++M
Sbjct: 284 RKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRM 343

Query: 155 QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214
           +K +I+P+G TFL +LSAC HAGF ++GL YF  M  D  +E P  EHY  +V +LGRAG
Sbjct: 344 KKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIE-PEVEHYGCLVDILGRAG 402

Query: 215 FLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSN 274
            L++A   I  M   P   ++ +LLS+C+ H N +IA+ + + + +L P+D   YVLLSN
Sbjct: 403 RLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAMEHLEELEPDDTGNYVLLSN 462

Query: 275 VSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +      WD    +R L+ ++ ++K PG S +
Sbjct: 463 IYADLAKWDGVSRMRKLIKSKSMKKTPGSSLI 494



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 133/314 (42%), Gaps = 48/314 (15%)

Query: 9   CDSSLDF---QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-------RQAGI 58
           CD + D      ++  V+  N   +NA+I    +      A+  + EM        +  I
Sbjct: 56  CDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPI 115

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
             D FT   ++ +   +  +  GKQ+HA + K G  SN+ ++N L+ MY  C ++ DA+K
Sbjct: 116 FPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHK 175

Query: 119 VFSSMDERDLVSWNSLLLG--------------------------CAHHGYSR-----EA 147
           VF  M ERD +SWNS++ G                              GY+R     +A
Sbjct: 176 VFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADA 235

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAI 206
           + +F QMQ   ++PD  + + VL AC   G ++ G   + Y  RN       +     A+
Sbjct: 236 LYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLL---RKTSICNAL 292

Query: 207 VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV--LDLWPN 264
           + +  + G + +A    + MS+    S +  ++     HG    A+   KR+    + PN
Sbjct: 293 MEMYSKCGCIGQAYQLFDQMSKGDVIS-WSTMIGGLANHGKAREAIELFKRMKKAKIEPN 351

Query: 265 DPAIYVLLSNVSKA 278
                 LLS  + A
Sbjct: 352 GITFLGLLSACAHA 365


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 178/302 (58%), Gaps = 4/302 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++ ++  + + V+ ++  R+ +S  AII+G+   G  E+AL  F ++   G+  ++ T 
Sbjct: 156 YAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTF 215

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T++V A+  ++    GKQ+HALI +      V +QN L+ MY+ CG +  + +VF +M E
Sbjct: 216 TTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLE 275

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R +VSWN++L+G   HG   E + LF+ + K E+KPD  T L VLS C H G +D+GL  
Sbjct: 276 RSVVSWNAMLMGYGRHGLGHEVISLFKDLHK-EVKPDSVTLLAVLSGCSHGGLVDEGLDI 334

Query: 186 F-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           F  +++  ++L      HY  I+ LLGR+G L +A + I +M     PS++ +LL AC+V
Sbjct: 335 FDTVVKEQSAL--LHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRV 392

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N  +    A+++L++ P +   YV+LSN+  A   W D   +R LM  + + K+PG S
Sbjct: 393 HANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQS 452

Query: 305 WV 306
           W+
Sbjct: 453 WI 454



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 128/276 (46%), Gaps = 34/276 (12%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y RC +  D +NV   +  R+ +SW  +I+G+       +AL  F +M +AG   + 
Sbjct: 52  VTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNE 111

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T+ +++ +        +GKQ+H+L+ K  ++S++FV + L+ MYA    I +A +VF +
Sbjct: 112 YTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDT 171

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--------- 173
           + ERD+VS  +++ G A  G   EA+ LF Q+    ++ +  TF  +++A          
Sbjct: 172 LPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYG 231

Query: 174 --CHAGFIDKGLQYFYLMRN-------------------DASLEPPRAEHYTAIVGLLGR 212
              HA  + K L +F  ++N                   D  LE         ++G  GR
Sbjct: 232 KQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMG-YGR 290

Query: 213 AGFLNEAESFINSMSR--NPGPSVYKALLSACQVHG 246
            G  +E  S    + +   P      A+LS C  HG
Sbjct: 291 HGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCS-HG 325



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 59/110 (53%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           EG+Q+HA +    Y   VF+  RLV MY  CGA++DA  V   M ER +VSW +++ G +
Sbjct: 28  EGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYS 87

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
                 EA+ LF +M +    P+  T   VL++C     I +G Q   L+
Sbjct: 88  QTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLL 137


>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
          Length = 542

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 185/307 (60%), Gaps = 2/307 (0%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           + I  Y++       + ++  V  ++ ++WNA+IAG+      ++AL+ F  MR  G   
Sbjct: 215 VMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRP 274

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGY-DSNVFVQNRLVFMYAICGAINDANKV 119
           D  T+ SI+ A   +   + GK++H  IF +   D +V + N L+ MYA CG+I +A +V
Sbjct: 275 DDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEV 334

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M ++D  SWNS++ G A HG++ E++ LF++M + ++KP+  TF+ VL AC HAG +
Sbjct: 335 FQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKV 394

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
            +G  YF LM+N   +E P  +HY  +V +LGRAG L EA  FI++M   P   +++ LL
Sbjct: 395 REGRMYFNLMKNVFKIE-PNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLL 453

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
            AC+VHG+ E+  R+ +++L +  ++   YVLLSN+  +   WD    +R LM + G++K
Sbjct: 454 GACRVHGDVELGRRANEQLLKMRKDESGDYVLLSNIYASQGEWDGVQKVRKLMDDGGVKK 513

Query: 300 KPGYSWV 306
           K G+S +
Sbjct: 514 KVGHSLI 520



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 141/301 (46%), Gaps = 23/301 (7%)

Query: 12  SLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVG 70
           ++D+   +++ +   +   WN +I G         A+  +++M   G+  D FT + ++ 
Sbjct: 62  TMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLK 121

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
           A   +S  K G  +H  + K G+ SN FV+N L++ +A CG +  A  +F +  +R++V 
Sbjct: 122 ACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVP 181

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
           W++L  G A  G    A QLF++M   ++     ++ V+++A    G ++K  + F    
Sbjct: 182 WSALTAGYARRGKLDVARQLFDEMPMKDL----VSWNVMITAYAKHGEMEKARKLFD--- 234

Query: 191 NDASLEPPRAEHYT--AIVGLLGRAGFLNEAESFINSM---SRNPGPSVYKALLSACQVH 245
                E P+ +  T  A++     +    EA    ++M    + P      ++LSA    
Sbjct: 235 -----EVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADL 289

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDI-RTLMYNRGIRKKPGYS 304
           G+ EI  +  + + D+   D  + VLLSN     D +   G I   L   +G+RKK   S
Sbjct: 290 GDLEIGKKIHRSIFDMCCGD--LSVLLSNA--LIDMYAKCGSIGNALEVFQGMRKKDTSS 345

Query: 305 W 305
           W
Sbjct: 346 W 346



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 103/248 (41%), Gaps = 36/248 (14%)

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC--GAINDANKVFSSMDERDLVSWNS 133
           + F+  KQ+HA +   G +S   V   L+F+ AI   G ++ A+++F+ + + D+  WN+
Sbjct: 24  TNFRSLKQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPDIFMWNT 83

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-----------HAGFIDKG 182
           ++ G A       AV L+ QM+   ++PD  TF  VL AC            H   +  G
Sbjct: 84  MIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSG 143

Query: 183 LQYFYLMRND--------ASLEPPRAEH----------YTAIVGLLGRAGFLNEAESFIN 224
            Q    +RN           L   RA            ++A+     R G L+ A    +
Sbjct: 144 FQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVARQLFD 203

Query: 225 SMSRNPGPSVYKALLSACQVHGNREIAVR----SAKRVLDLWPNDPAIYVLLSNVSKATD 280
            M      S +  +++A   HG  E A +      K+ +  W    A YVL     +A +
Sbjct: 204 EMPMKDLVS-WNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALE 262

Query: 281 CWDDAGDI 288
            +D   D+
Sbjct: 263 MFDAMRDL 270


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 179/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    +   ++  V  R+ ++WN ++ GF      E+A   F  MR+ GI  D  + 
Sbjct: 392 YFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASF 451

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++ +   ++   +G  +H  I K+GY  N+ +   L+ MYA CG++ DA +VF  +++
Sbjct: 452 STVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIED 511

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            +++SW +++     HG + + ++LFE M    I+P   TF+ VLSAC H G +++GL +
Sbjct: 512 HNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAH 571

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+    + P   EHY  +V LLGRAG+L+EA+ FI SM   P PSV+ ALL AC+ +
Sbjct: 572 FNSMKKIHDMNPG-PEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKY 630

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN ++   +A+R+ ++ P +P  YVLL+N+   +   ++A ++R LM   G+RK+PG SW
Sbjct: 631 GNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSW 690

Query: 306 V 306
           +
Sbjct: 691 I 691



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 1/158 (0%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           ++W ++I    +     QAL  F++MR +G   + FT +SI+ A         G+Q+H+L
Sbjct: 211 VTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSL 270

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           I K G+D+N+FV   LV MYA C  ++ A +VF  M ER+LVSWNS+++G  H+     A
Sbjct: 271 IHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRA 330

Query: 148 VQLFEQ-MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           V +F+  +++  + P+  +   VLSAC + G ++ G Q
Sbjct: 331 VGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQ 368



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 92/178 (51%), Gaps = 1/178 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSE-MRQAGIDIDYFT 64
           Y++C        V+  +  RN +SWN++I GF +    ++A+  F + +R+  +  +  +
Sbjct: 290 YAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVS 349

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++S++ A   + G   G+Q+H ++ K G     +V N L+ MY  C   ++  K+F  + 
Sbjct: 350 VSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVG 409

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +RD+V+WN L++G   +    EA   F  M++  I PD  +F  VL +      + +G
Sbjct: 410 DRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQG 467



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDLVSWNSLL 135
            K   Q+H  I    Y S  F+ N L+ +YA CG +N A  +FS      + +V+W SL+
Sbjct: 158 LKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLI 217

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
              +H     +A+ LF QM+ +   P+  TF  +LSA      +  G Q   L+ 
Sbjct: 218 THLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIH 272



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 90/199 (45%), Gaps = 5/199 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S +D   V+  +   N ISW A+I+ +   G   Q ++ F  M   GI+  +
Sbjct: 490 ITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSH 549

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVF 120
            T   ++ A       +EG      + KI +D N   ++   +V +    G +++A +  
Sbjct: 550 VTFVCVLSACSHTGRVEEGLAHFNSMKKI-HDMNPGPEHYACMVDLLGRAGWLDEAKRFI 608

Query: 121 SSMDERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
            SM  +   S W +LL  C  +G  +   +  E++ + E    G  ++++ + C  +G +
Sbjct: 609 ESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPG-NYVLLANMCTRSGRL 667

Query: 180 DKGLQYFYLMRNDASLEPP 198
           ++  +   LM  +   + P
Sbjct: 668 EEANEVRRLMGVNGVRKEP 686


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 173/304 (56%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C   L  Q V+ +   +N +    I+  +    S E+AL  FS+M    +  + 
Sbjct: 279 INMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNE 338

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T    + +I  +S  K G  +H L+ K GY ++V V N LV MYA  G+I DA K FS 
Sbjct: 339 YTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSG 398

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD+V+WN+++ G +HHG  RE ++ F++M      P+  TF+ VL AC H GF+++G
Sbjct: 399 MTFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEIPNRITFIGVLQACSHVGFVEQG 458

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L YF  +    +++P   +HYT IVGLL +AG   +AE F+ +         ++ALL+AC
Sbjct: 459 LYYFNQLMKKFNVQPD-LQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRALLNAC 517

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            V  N  +  + A+  +  +PND  +YVLLSN+   +  W+   ++R+LM  RG++K+PG
Sbjct: 518 YVRRNFRLGKKVAEYAIYKYPNDSGVYVLLSNIHAKSREWEGVAEVRSLMNKRGVKKEPG 577

Query: 303 YSWV 306
            SW+
Sbjct: 578 VSWI 581



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 1/169 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-IDYFT 64
           Y +C  ++  + V+  +  RN +SW A++ G+ N G   + LK F  M  +     + F 
Sbjct: 79  YVKCGETVRARKVFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFV 138

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            T +  +       +EGKQ H    K G  S+ FV+N LV+MY++C    +A +V   + 
Sbjct: 139 ATVVFKSCSSSGRIEEGKQFHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIRVLDDLP 198

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
             DL  ++S L G    G  +E  ++  +M K ++  D  T+L  L  C
Sbjct: 199 YCDLSVFSSALSGYLECGAFKEGAEVLRRMAKEDLVLDNITYLSCLRLC 247



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 4/114 (3%)

Query: 76  SGFKEGKQMHALIFKIGYDS---NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           S  + G+ +H  +      S   +V+  N L+ +Y  CG    A KVF  M ER++VSW 
Sbjct: 45  SYLRTGESIHGHLIVTNQSSRAKDVYQINSLINLYVKCGETVRARKVFDLMPERNVVSWC 104

Query: 133 SLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++ G  + G+  E ++LF+ M    E +P+     VV  +C  +G I++G Q+
Sbjct: 105 AMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIEEGKQF 158



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 72/153 (47%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           +++ ++G+   G+ ++  +    M +  + +D  T  S +     +      +Q+H+ + 
Sbjct: 205 FSSALSGYLECGAFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMV 264

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
           ++G++S V     ++ MY  CG +  A +VF +   +++V   +++          EA+ 
Sbjct: 265 RLGFNSEVEASGAIINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEALN 324

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           LF +M   E+ P+  TF + L++      +  G
Sbjct: 325 LFSKMDTKEVPPNEYTFAISLNSIAELSLLKHG 357


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/310 (38%), Positives = 173/310 (55%), Gaps = 7/310 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGI 58
           I  YS+C S    ++++  +    RN ++W  +I G    G    ALK F EM     G+
Sbjct: 308 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 367

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIG-YDSNV-FVQNRLVFMYAICGAINDA 116
             + +TI+ I+ A   ++  + GKQ+HA + +   YDS+  FV N L+ MY+ CG ++ A
Sbjct: 368 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTA 427

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
             VF SM ++  +SW S++ G   HG   EA+ +F++M+K    PD  TFLVVL AC H 
Sbjct: 428 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 487

Query: 177 GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYK 236
           G +D+GL YF  M  D  L  PRAEHY   + LL R G L++A   +  M   P   V+ 
Sbjct: 488 GMVDQGLSYFDSMSADYGLT-PRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWV 546

Query: 237 ALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
           ALLSAC+VH N E+A  +  +++++   +   Y L+SN+      W D   IR LM   G
Sbjct: 547 ALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSG 606

Query: 297 IRKKPGYSWV 306
           I+K+PG SWV
Sbjct: 607 IKKRPGCSWV 616



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 135/277 (48%), Gaps = 23/277 (8%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F+N+       + ++W A+IAG+   G   +AL  F +M  +G   +  TI S++ A   
Sbjct: 209 FKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACAS 268

Query: 75  ISGFKEGKQMHALIFKI----------GYDSNVFVQNRLVFMYAICGAINDANKVFSS-- 122
           +  F +G ++HA   K           G D ++ V N L+ MY+ C +   A  +F    
Sbjct: 269 LGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIP 328

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFID 180
           ++ER++V+W  ++ G A +G S +A++LF +M  +   + P+  T   +L AC H   I 
Sbjct: 329 LEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIR 388

Query: 181 KGLQ-YFYLMRNDASLEPPRAEHYTA--IVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
            G Q + Y++R+    +   + ++ A  ++ +  + G ++ A    +SMS+    S + +
Sbjct: 389 IGKQIHAYVLRHH---QYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAIS-WTS 444

Query: 238 LLSACQVH--GNREIAVRSAKRVLDLWPNDPAIYVLL 272
           +++   +H  G+  + +    R     P+D    V+L
Sbjct: 445 MMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 481



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 9/202 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTR---NQISWNAIIAGFCNLGSGEQALKCFSEM------ 53
           +  YSRC S  +   ++  +  R   + ISWN+I++      +   AL  FS+M      
Sbjct: 52  VAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHE 111

Query: 54  RQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113
           +      D  +I +I+ A G +    + K++H    + G   +VFV N L+  YA CG +
Sbjct: 112 KPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLM 171

Query: 114 NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            +A KVF+ M+ +D+VSWN+++ G +  G  + A +LF+ M+K  I  D  T+  V++  
Sbjct: 172 ENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGY 231

Query: 174 CHAGFIDKGLQYFYLMRNDASL 195
              G   + L  F  M    SL
Sbjct: 232 SQRGCSHEALNVFRQMIFSGSL 253



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 73/130 (56%), Gaps = 9/130 (6%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           M +AG  +D+FT+  ++ A G +  ++ G   H LI   G++SNVF+ N LV MY+ CG+
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 113 INDANKVFSSMDER---DLVSWNSLLLGCAHHGYSREAVQLFEQM------QKTEIKPDG 163
           + +A+ +F  + +R   D++SWNS++        +  A+ LF +M      + T  + D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 164 TTFLVVLSAC 173
            + + +L AC
Sbjct: 121 ISIVNILPAC 130


>gi|297741511|emb|CBI32643.3| unnamed protein product [Vitis vinifera]
          Length = 1400

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 170/301 (56%), Gaps = 2/301 (0%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            YS+C        V+  +  +N +SW AIIAGF      +  L+ +S MR + +  +  T 
Sbjct: 1019 YSKCGELCHAYRVFEEMPVKNVVSWTAIIAGFAQEWLVDGCLELYSRMRNSTLKPNDLTF 1078

Query: 66   TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            T ++           G+  H    ++G+DS V V N L+ MY  CG + DA  +F  MD 
Sbjct: 1079 TCLLSTCTGGGSLGRGRSAHCQTIEMGFDSYVHVANALISMYCKCGNVEDAYYIFERMDG 1138

Query: 126  RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            +D+VSWNS++ G A HG + +A+ LFE+M+K ++KPD  TFL VLS+C H G + +G  Y
Sbjct: 1139 KDIVSWNSMIAGHAQHGLAVQAIDLFEEMKKQKLKPDAITFLGVLSSCRHVGLVKQGQFY 1198

Query: 186  FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            F  M        P  +H+  +V LLGRAG L EA  FI  M  +P   ++ +LLS+C++H
Sbjct: 1199 FNSMVEHGV--KPELDHFACVVDLLGRAGLLEEARDFIVKMPIHPNAIIWGSLLSSCRLH 1256

Query: 246  GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            G+  + + +A+  L L P   A ++ L+++  +  CWD A  +R LM  +G++ +PG SW
Sbjct: 1257 GSVWLGIEAAENRLLLEPECAATHLQLASLYASVGCWDQAARVRKLMKGKGLKTEPGCSW 1316

Query: 306  V 306
            +
Sbjct: 1317 I 1317



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 54/96 (56%)

Query: 78   FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             K G Q H L  + G+  NV+V + L+  Y+ CG +  A +VF  M  +++VSW +++ G
Sbjct: 990  LKSGVQFHCLAIRTGFVGNVYVGSCLISFYSKCGELCHAYRVFEEMPVKNVVSWTAIIAG 1049

Query: 138  CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
             A        ++L+ +M+ + +KP+  TF  +LS C
Sbjct: 1050 FAQEWLVDGCLELYSRMRNSTLKPNDLTFTCLLSTC 1085



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 4/190 (2%)

Query: 3    ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
            I  Y +C +  D   ++  +  ++ +SWN++IAG    G   QA+  F EM++  +  D 
Sbjct: 1117 ISMYCKCGNVEDAYYIFERMDGKDIVSWNSMIAGHAQHGLAVQAIDLFEEMKKQKLKPDA 1176

Query: 63   FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             T   ++ +   +   K+G+     + + G    +     +V +    G + +A      
Sbjct: 1177 ITFLGVLSSCRHVGLVKQGQFYFNSMVEHGVKPELDHFACVVDLLGRAGLLEEARDFIVK 1236

Query: 123  MD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD-GTTFLVVLSACCHAGFID 180
            M    + + W SLL  C  HG     ++  E   +  ++P+   T L + S     G  D
Sbjct: 1237 MPIHPNAIIWGSLLSSCRLHGSVWLGIEAAE--NRLLLEPECAATHLQLASLYASVGCWD 1294

Query: 181  KGLQYFYLMR 190
            +  +   LM+
Sbjct: 1295 QAARVRKLMK 1304


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 179/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    +   ++  V  R+ ++WN ++ GF      E+A   F  MR+ GI  D  + 
Sbjct: 157 YFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASF 216

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++ +   ++   +G  +H  I K+GY  N+ +   L+ MYA CG++ DA +VF  +++
Sbjct: 217 STVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIED 276

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            +++SW +++     HG + + ++LFE M    I+P   TF+ VLSAC H G +++GL +
Sbjct: 277 HNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAH 336

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+    + P   EHY  +V LLGRAG+L+EA+ FI SM   P PSV+ ALL AC+ +
Sbjct: 337 FNSMKKIHDMNPG-PEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKY 395

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN ++   +A+R+ ++ P +P  YVLL+N+   +   ++A ++R LM   G+RK+PG SW
Sbjct: 396 GNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSW 455

Query: 306 V 306
           +
Sbjct: 456 I 456



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 80/133 (60%), Gaps = 1/133 (0%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           MR +G   + FT +SI+ A         G+Q+H+LI K G+D+N+FV   LV MYA C  
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ-MQKTEIKPDGTTFLVVLS 171
           ++ A +VF  M ER+LVSWNS+++G  H+     AV +F+  +++  + P+  +   VLS
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 172 ACCHAGFIDKGLQ 184
           AC + G ++ G Q
Sbjct: 121 ACANMGGLNFGRQ 133



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 92/178 (51%), Gaps = 1/178 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSE-MRQAGIDIDYFT 64
           Y++C        V+  +  RN +SWN++I GF +    ++A+  F + +R+  +  +  +
Sbjct: 55  YAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVS 114

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++S++ A   + G   G+Q+H ++ K G     +V N L+ MY  C   ++  K+F  + 
Sbjct: 115 VSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVG 174

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +RD+V+WN L++G   +    EA   F  M++  I PD  +F  VL +      + +G
Sbjct: 175 DRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQG 232



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 90/199 (45%), Gaps = 5/199 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S +D   V+  +   N ISW A+I+ +   G   Q ++ F  M   GI+  +
Sbjct: 255 ITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSH 314

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVF 120
            T   ++ A       +EG      + KI +D N   ++   +V +    G +++A +  
Sbjct: 315 VTFVCVLSACSHTGRVEEGLAHFNSMKKI-HDMNPGPEHYACMVDLLGRAGWLDEAKRFI 373

Query: 121 SSMDERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
            SM  +   S W +LL  C  +G  +   +  E++ + E    G  ++++ + C  +G +
Sbjct: 374 ESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPG-NYVLLANMCTRSGRL 432

Query: 180 DKGLQYFYLMRNDASLEPP 198
           ++  +   LM  +   + P
Sbjct: 433 EEANEVRRLMGVNGVRKEP 451


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 172/307 (56%), Gaps = 7/307 (2%)

Query: 6   YSRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDID 61
           YS+C S    ++++  +    RN ++W  +I G    G    ALK F EM     G+  +
Sbjct: 418 YSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPN 477

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIG-YDSNV-FVQNRLVFMYAICGAINDANKV 119
            +TI+ I+ A   ++  + GKQ+HA + +   YDS+  FV N L+ MY+ CG ++ A  V
Sbjct: 478 AYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHV 537

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F SM ++  +SW S++ G   HG   EA+ +F++M+K    PD  TFLVVL AC H G +
Sbjct: 538 FDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMV 597

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           D+GL YF  M  D  L  PRAEHY   + LL R G L++A   +  M   P   V+ ALL
Sbjct: 598 DQGLSYFDSMSADYGLT-PRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALL 656

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           SAC+VH N E+A  +  +++++   +   Y L+SN+      W D   IR LM   GI+K
Sbjct: 657 SACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKK 716

Query: 300 KPGYSWV 306
           +PG SWV
Sbjct: 717 RPGCSWV 723



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 135/277 (48%), Gaps = 23/277 (8%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F+N+       + ++W A+IAG+   G   +AL  F +M  +G   +  TI S++ A   
Sbjct: 316 FKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACAS 375

Query: 75  ISGFKEGKQMHALIFKI----------GYDSNVFVQNRLVFMYAICGAINDANKVFS--S 122
           +  F +G ++HA   K           G D ++ V N L+ MY+ C +   A  +F    
Sbjct: 376 LGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIP 435

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFID 180
           ++ER++V+W  ++ G A +G S +A++LF +M  +   + P+  T   +L AC H   I 
Sbjct: 436 LEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIR 495

Query: 181 KGLQ-YFYLMRNDASLEPPRAEHYTA--IVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
            G Q + Y++R+    +   + ++ A  ++ +  + G ++ A    +SMS+    S + +
Sbjct: 496 IGKQIHAYVLRHH---QYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAIS-WTS 551

Query: 238 LLSACQVH--GNREIAVRSAKRVLDLWPNDPAIYVLL 272
           +++   +H  G+  + +    R     P+D    V+L
Sbjct: 552 MMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 588



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 9/202 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTR---NQISWNAIIAGFCNLGSGEQALKCFSEM------ 53
           +  YSRC S  +   ++  +  R   + ISWN+I++      +   AL  FS+M      
Sbjct: 159 VAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHE 218

Query: 54  RQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113
           +      D  +I +I+ A G +    + K++H    + G   +VFV N L+  YA CG +
Sbjct: 219 KPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLM 278

Query: 114 NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            +A KVF+ M+ +D+VSWN+++ G +  G  + A +LF+ M+K  I  D  T+  V++  
Sbjct: 279 ENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGY 338

Query: 174 CHAGFIDKGLQYFYLMRNDASL 195
              G   + L  F  M    SL
Sbjct: 339 SQRGCSHEALNVFRQMIFSGSL 360



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 90/180 (50%), Gaps = 9/180 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           + +Y  C ++     V   V     + WN +I      G  + A+     M +AG  +D+
Sbjct: 58  VASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDH 117

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+  ++ A G +  ++ G   H LI   G++SNVF+ N LV MY+ CG++ +A+ +F  
Sbjct: 118 FTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDE 177

Query: 123 MDER---DLVSWNSLLLGCAHHGYSREAVQLFEQM------QKTEIKPDGTTFLVVLSAC 173
           + +R   D++SWNS++        +  A+ LF +M      + T  + D  + + +L AC
Sbjct: 178 ITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPAC 237


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 173/307 (56%), Gaps = 7/307 (2%)

Query: 6   YSRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDID 61
           YS+C S    ++++  +    RN ++W  +I G    G    ALK F EM     G+  +
Sbjct: 456 YSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPN 515

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIG-YDSNV-FVQNRLVFMYAICGAINDANKV 119
            +TI+ I+ A   ++  + GKQ+HA + +   Y+S+  FV N L+ MY+ CG ++ A  V
Sbjct: 516 AYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHV 575

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F SM ++  +SW S++ G   HG   EA+ +F++M+K    PD  TFLVVL AC H G +
Sbjct: 576 FDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMV 635

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           D+GL YF  M  D  L  PRAEHY   + LL R+G L++A   +  M   P   V+ ALL
Sbjct: 636 DQGLSYFDSMSADYGLT-PRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALL 694

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           SAC+VH N E+A  +  +++++   +   Y L+SN+      W D   IR LM   GI+K
Sbjct: 695 SACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKK 754

Query: 300 KPGYSWV 306
           +PG SWV
Sbjct: 755 RPGCSWV 761



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 134/277 (48%), Gaps = 23/277 (8%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F+N+       + ++W A+IAG+   G   +AL  F +M  +G   +  TI S++ A   
Sbjct: 354 FKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACAS 413

Query: 75  ISGFKEGKQMHALIFKI----------GYDSNVFVQNRLVFMYAICGAINDANKVFS--S 122
           +  F +G ++HA   K           G D ++ V N L+ MY+ C +   A  +F    
Sbjct: 414 LGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIP 473

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFID 180
           ++ER++V+W  ++ G A +G S +A++LF +M  +   + P+  T   +L AC H   I 
Sbjct: 474 LEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIR 533

Query: 181 KGLQ-YFYLMRNDASLEPPRAEHYTA--IVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
            G Q + Y++R+        + ++ A  ++ +  + G ++ A    +SMS+    S + +
Sbjct: 534 IGKQIHAYVLRHH---RYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAIS-WTS 589

Query: 238 LLSACQVH--GNREIAVRSAKRVLDLWPNDPAIYVLL 272
           +++   +H  G+  + +    R     P+D    V+L
Sbjct: 590 MMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 626



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 9/202 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTR---NQISWNAIIAGFCNLGSGEQALKCFSEM------ 53
           +  YSRC S  +   ++  +  R   + ISWN+I++      +   AL  FS+M      
Sbjct: 197 VAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHE 256

Query: 54  RQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113
           +      D  +I +I+ A G +    + K++H    + G   +VFV N L+  YA CG +
Sbjct: 257 KPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLM 316

Query: 114 NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            +A KVF+ M+ +D+VSWN+++ G +  G    A +LF+ M+K  I  D  T+  V++  
Sbjct: 317 ENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGY 376

Query: 174 CHAGFIDKGLQYFYLMRNDASL 195
              G   + L  F  M    SL
Sbjct: 377 SQRGCSHEALNLFRQMIFSGSL 398



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 9/180 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           + +Y  C ++     V   V     + WN +I      G  + A+     M +AG   D+
Sbjct: 96  VASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDH 155

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+  ++ A G +  ++ G   H LI   G++SNVF+ N LV MY+ CG++ +A+ +F  
Sbjct: 156 FTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDE 215

Query: 123 MDER---DLVSWNSLLLGCAHHGYSREAVQLFEQM------QKTEIKPDGTTFLVVLSAC 173
           + +R   D++SWNS++        +  A+ LF +M      + T  + D  + + +L AC
Sbjct: 216 ITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPAC 275


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/281 (39%), Positives = 169/281 (60%), Gaps = 1/281 (0%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N   WN +I G       E+AL  F+EM+ +G+  D  T+ S++ A   +   + GK +H
Sbjct: 172 NLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLH 231

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
             I K   + +V +   LV MYA CG+I  A +VF  M E+D+++W +L++G A  G   
Sbjct: 232 VYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGL 291

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205
           +A++LF +MQ +E+KPD  TF+ VL+AC HAG +++G+ YF  M N   ++ P  EHY  
Sbjct: 292 KALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQ-PSIEHYGC 350

Query: 206 IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265
           +V +LGRAG + EAE  I +M   P   V   LLSAC++HGN  +A R+A+++++L P +
Sbjct: 351 MVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKN 410

Query: 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
              YVLLSN+  +   W+ A  +R LM  R I+K PG S +
Sbjct: 411 GGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAI 451



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 107/244 (43%), Gaps = 37/244 (15%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V++ +      + N+II G+ N     QA+  +  M   G+D D FT  S+  + GV+  
Sbjct: 34  VFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLC- 92

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             EGKQ+H    K+G+ S+ ++QN L+ MY+ CG +  A KVF  M  + +VSW +++  
Sbjct: 93  --EGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGA 150

Query: 138 CAHHGYSREAVQLFE--------------------------------QMQKTEIKPDGTT 165
            A      EA++LF                                 +MQ + +K D  T
Sbjct: 151 YAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVT 210

Query: 166 FLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINS 225
              +L AC H G ++ G ++ ++      +E   A   TA+V +  + G +  A      
Sbjct: 211 MASLLIACTHLGALELG-KWLHVYIEKEKIEVDVALG-TALVDMYAKCGSIESAMRVFQE 268

Query: 226 MSRN 229
           M   
Sbjct: 269 MPEK 272



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 2/165 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S      V+  +  ++ ++W A+I G    G G +AL+ F EM+ + +  D  T 
Sbjct: 253 YAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITF 312

Query: 66  TSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A        EG    +++  K G   ++     +V M    G I +A  +  +M 
Sbjct: 313 VGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMP 372

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
              D      LL  C  HG    A +  +Q+ + + K  GT  L+
Sbjct: 373 MAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLL 417


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 173/307 (56%), Gaps = 7/307 (2%)

Query: 6   YSRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDID 61
           YS+C S    ++++  +    RN ++W  +I G    G    ALK F EM     G+  +
Sbjct: 463 YSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPN 522

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIG-YDSNV-FVQNRLVFMYAICGAINDANKV 119
            +TI+ I+ A   ++  + GKQ+HA + +   Y+S+  FV N L+ MY+ CG ++ A  V
Sbjct: 523 AYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHV 582

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F SM ++  +SW S++ G   HG   EA+ +F++M+K    PD  TFLVVL AC H G +
Sbjct: 583 FDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMV 642

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           D+GL YF  M  D  L  PRAEHY   + LL R+G L++A   +  M   P   V+ ALL
Sbjct: 643 DQGLSYFDSMSADYGLT-PRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALL 701

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           SAC+VH N E+A  +  +++++   +   Y L+SN+      W D   IR LM   GI+K
Sbjct: 702 SACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKK 761

Query: 300 KPGYSWV 306
           +PG SWV
Sbjct: 762 RPGCSWV 768



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 134/277 (48%), Gaps = 23/277 (8%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F+N+       + ++W A+IAG+   G   +AL  F +M  +G   +  TI S++ A   
Sbjct: 361 FKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACAS 420

Query: 75  ISGFKEGKQMHALIFKI----------GYDSNVFVQNRLVFMYAICGAINDANKVFS--S 122
           +  F +G ++HA   K           G D ++ V N L+ MY+ C +   A  +F    
Sbjct: 421 LGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIP 480

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFID 180
           ++ER++V+W  ++ G A +G S +A++LF +M  +   + P+  T   +L AC H   I 
Sbjct: 481 LEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIR 540

Query: 181 KGLQ-YFYLMRNDASLEPPRAEHYTA--IVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
            G Q + Y++R+        + ++ A  ++ +  + G ++ A    +SMS+    S + +
Sbjct: 541 IGKQIHAYVLRHH---RYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAIS-WTS 596

Query: 238 LLSACQVH--GNREIAVRSAKRVLDLWPNDPAIYVLL 272
           +++   +H  G+  + +    R     P+D    V+L
Sbjct: 597 MMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 633



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 9/202 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTR---NQISWNAIIAGFCNLGSGEQALKCFSEM------ 53
           +  YSRC S  +   ++  +  R   + ISWN+I++      +   AL  FS+M      
Sbjct: 204 VAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHE 263

Query: 54  RQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113
           +      D  +I +I+ A G +    + K++H    + G   +VFV N L+  YA CG +
Sbjct: 264 KPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLM 323

Query: 114 NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            +A KVF+ M+ +D+VSWN+++ G +  G    A +LF+ M+K  I  D  T+  V++  
Sbjct: 324 ENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGY 383

Query: 174 CHAGFIDKGLQYFYLMRNDASL 195
              G   + L  F  M    SL
Sbjct: 384 SQRGCSHEALNLFRQMIFSGSL 405



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 9/180 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           + +Y  C ++     V   V     + WN +I      G  + A+     M +AG   D+
Sbjct: 103 VASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDH 162

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+  ++ A G +  ++ G   H LI   G++SNVF+ N LV MY+ CG++ +A+ +F  
Sbjct: 163 FTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDE 222

Query: 123 MDER---DLVSWNSLLLGCAHHGYSREAVQLFEQM------QKTEIKPDGTTFLVVLSAC 173
           + +R   D++SWNS++        +  A+ LF +M      + T  + D  + + +L AC
Sbjct: 223 ITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPAC 282


>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/292 (38%), Positives = 181/292 (61%), Gaps = 3/292 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
            +++  +  ++ +SWN++I+G+      + A+  F +M+  G   D  T++SI+ A   +
Sbjct: 371 HDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGL 430

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD-ERDLVSWNSL 134
                G Q+H L+ K  + +++ + N LV MY+ CGAI +A  VF  M+ +RD++SWN++
Sbjct: 431 VDLVLGTQIHQLVTK-AFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAM 489

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + G A+HG++ EA+QLF+ M++  ++P   TF+ VL+AC HAG I++G + F  M N   
Sbjct: 490 IGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHG 549

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           ++P + EHY A+V ++GR G L EA S INSM   P  +V+ ALL AC+VH N E+A  +
Sbjct: 550 IKP-QVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAA 608

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           A+ ++ L P   A YVLL N+      WDDA ++RT+M    ++K  GYS V
Sbjct: 609 AEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQKDAGYSRV 660



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 15/224 (6%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN ISWN++I  +   G    A + F +M    ++ D F+  +++     I   KE    
Sbjct: 287 RNVISWNSMIMCYVRAGDIVSARELFDKM----VERDTFSWNTMISGYVQILDMKEASN- 341

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
              +F    + +    N ++  ++  G++  A+ +F  + E+ LVSWNS++ G   +   
Sbjct: 342 ---LFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDY 398

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID--KGLQYFYLMRNDASLEPPRAEH 202
           + A+ +F QMQ    KPD  T   +LSAC  AG +D   G Q   L+      + P    
Sbjct: 399 KGAMNIFLQMQLEGKKPDRHTLSSILSAC--AGLVDLVLGTQIHQLVTKAFIADLPIN-- 454

Query: 203 YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
             ++V +  R G + EA    + M+       + A++     HG
Sbjct: 455 -NSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHG 497



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 6/143 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++ S    N I+WN +I  +       +A + F EM    I + +  + S  G I   
Sbjct: 77  RELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDI-VSWNLMLS--GYISCG 133

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             F E  +    +F    +++    N ++  YA  G ++ A ++F+ M ER++VSWN+++
Sbjct: 134 GKFVERARN---MFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMV 190

Query: 136 LGCAHHGYSREAVQLFEQMQKTE 158
            G   +G+  +A++ F+ M K +
Sbjct: 191 SGYLMNGHVEKAIEFFKLMPKRD 213



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 24/184 (13%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGA--INDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
           +F+   + ++   N ++  Y  CG   +  A  +F  M E D VSWN++L G A  G   
Sbjct: 110 LFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMD 169

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDASLEPPRAEHY 203
           +A +LF +M +  +     ++  ++S     G ++K +++F LM  R+ ASL        
Sbjct: 170 KAEELFNEMPERNV----VSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLR------- 218

Query: 204 TAIVGLLGRAGFLNEAESFINSMSRNPGP----SVYKALLSACQVHGNREIAVRSAKRVL 259
            A+V  L +   L EAE  +     N G       Y  L++    +G + +A   A+++ 
Sbjct: 219 -ALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAG---YGQKGMAY-EARKLF 273

Query: 260 DLWP 263
           D  P
Sbjct: 274 DRIP 277



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 40/208 (19%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ---------- 55
           Y++  +    + +++ +  RN +SWNA+++G+   G  E+A++ F  M +          
Sbjct: 162 YAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALV 221

Query: 56  ------------------------AGIDID-YFTITSIVGAIGVISGFKEGKQMHALIFK 90
                                    G  +D Y T+ +  G  G+    ++      L   
Sbjct: 222 SGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCD 281

Query: 91  IGYD-SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
            GY   NV   N ++  Y   G I  A ++F  M ERD  SWN+++ G       +EA  
Sbjct: 282 CGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASN 341

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           LF +M     +PD  ++ +++S     G
Sbjct: 342 LFSRMP----EPDTLSWNMMISGFSEIG 365



 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 17/146 (11%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G IN+A ++F S +  + ++WN ++          +A QLFE+M   +I     ++ ++L
Sbjct: 71  GRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDI----VSWNLML 126

Query: 171 SA--CCHAGFIDKGLQYFYLMRNDASLEPPRAE--HYTAIVGLLGRAGFLNEAESFINSM 226
           S    C   F+++    F  M        P  +   +  ++    ++G +++AE   N M
Sbjct: 127 SGYISCGGKFVERARNMFDQM--------PETDCVSWNTMLSGYAKSGTMDKAEELFNEM 178

Query: 227 SRNPGPSVYKALLSACQVHGNREIAV 252
                 S + A++S   ++G+ E A+
Sbjct: 179 PERNVVS-WNAMVSGYLMNGHVEKAI 203


>gi|296085266|emb|CBI28998.3| unnamed protein product [Vitis vinifera]
          Length = 732

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 178/298 (59%), Gaps = 5/298 (1%)

Query: 10  DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIV 69
           D S +F   ++ V   + +SW A+I+   + G   +A+   + +++AG   D F   SI 
Sbjct: 437 DDSFEF---FNGVERLDLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIF 493

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-RDL 128
                I+ +++ K +H+L+ K+GY+++VFV + ++  YA CG I +A +VF      RD+
Sbjct: 494 NCCAGIAAYRQTKSVHSLVVKMGYEAHVFVASAVIDAYAKCGDIENARRVFDQTSRFRDV 553

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL 188
           + +N++++  AHHG  REAV+ FE+M+   ++P   TF+ V+SAC H G +++G  +F  
Sbjct: 554 ILFNTMVMAYAHHGLVREAVETFEKMKLATLEPSQATFVSVISACSHLGLVEQGDIFFKS 613

Query: 189 MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
           M  D  ++P   ++Y  +V L  R GFL +A+  I +M   P P+++++LL+ C++HGN+
Sbjct: 614 MNLDYGMDPS-PDNYGCLVDLFSRNGFLEDAKHIIETMPFPPWPAIWRSLLNGCRIHGNK 672

Query: 249 EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           E+   +AK++L L P + A YVLLS V      W DA  +R  M  RG+ K PG SW+
Sbjct: 673 ELGEWAAKKLLQLVPENDAAYVLLSKVYSEEGSWSDAAKVRKGMIERGLWKDPGCSWI 730



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 6/192 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C        V+  +  +N +SW  +++G    G  E  L  + EM + G+  + 
Sbjct: 118 IRMYTKCGFLAGGLKVFGEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNE 177

Query: 63  FT---ITSIVGAIG---VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
           F    +T    A+G   V+     G+Q+H LI +     +  V N L+ MY   G    A
Sbjct: 178 FALGCVTKACAALGGCLVVGNLNFGRQIHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYA 237

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
            KVF  + ++D++SWN++  G +    +RE  + F ++  T +KP+  TF ++   C  A
Sbjct: 238 LKVFDRLQDKDIISWNTVFAGLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEA 297

Query: 177 GFIDKGLQYFYL 188
             +  GLQ+  L
Sbjct: 298 LDLVSGLQFHCL 309



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 137/307 (44%), Gaps = 16/307 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +SRC +      V+ S   ++  + N +I+G+       +AL  F  +   G++ D 
Sbjct: 326 INMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNLNGLGLEADE 385

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T +S + A       K G+QMH  I K G+ S  +V + L+  Y   G ++D+ + F+ 
Sbjct: 386 CTFSSALEACFRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVGFGLLDDSFEFFNG 445

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++  DLVSW +++    H GYS EA+ L  ++++   KPD   F  + + C        G
Sbjct: 446 VERLDLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIFNCC-------AG 498

Query: 183 LQYFYLMRNDASLEPPRAEH-----YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
           +  +   ++  SL             +A++    + G +  A    +  SR     ++  
Sbjct: 499 IAAYRQTKSVHSLVVKMGYEAHVFVASAVIDAYAKCGDIENARRVFDQTSRFRDVILFNT 558

Query: 238 LLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDC-WDDAGDI--RTLMYN 294
           ++ A   HG    AV + ++ + L   +P+    +S +S  +     + GDI  +++  +
Sbjct: 559 MVMAYAHHGLVREAVETFEK-MKLATLEPSQATFVSVISACSHLGLVEQGDIFFKSMNLD 617

Query: 295 RGIRKKP 301
            G+   P
Sbjct: 618 YGMDPSP 624



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 52/97 (53%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G Q+HA I K+G+ +++F QN L+ MY  CG +    KVF  M  ++LVSW  ++ G   
Sbjct: 95  GSQIHAQIIKLGFCNDIFSQNNLIRMYTKCGFLAGGLKVFGEMPMKNLVSWTLVVSGAVQ 154

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           +G     + ++ +M +T + P+      V  AC   G
Sbjct: 155 NGEFEMGLGVYLEMIRTGLVPNEFALGCVTKACAALG 191



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  ++ ++ ISWN + AG        +  + F ++   G+  +  T + +    G    
Sbjct: 240 VFDRLQDKDIISWNTVFAGLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALD 299

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G Q H L F+ G      V + L+ M++ CGA+  A  VF S   + + + N ++ G
Sbjct: 300 LVSGLQFHCLAFRFGISDEASVTSSLINMFSRCGAMRMACLVFDSAPFKSIHTCNEMISG 359

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
              + ++ EA+ LF  +    ++ D  TF   L AC
Sbjct: 360 YNLNCHNAEALNLFCNLNGLGLEADECTFSSALEAC 395


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 169/302 (55%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C        V+  +  ++ ++WN++I GF   G  E+AL  ++EM   GI  D FTI
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTI 225

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   I     GK+ H  + K+G   N+   N L+ +YA CG + +A  +F  M +
Sbjct: 226 VSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD 285

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++ VSW SL++G A +G  +EA++LF+ M+  E + P   TF+ +L AC H G + +G +
Sbjct: 286 KNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFE 345

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF  M  +  +E PR EH+  +V LL RAG + +A  +I  M   P   +++ LL AC V
Sbjct: 346 YFRRMSEEYKIE-PRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTV 404

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HG+ ++A  +  ++L L PN    YVLLSN+  +   W D   IR  M   G+RK PG+S
Sbjct: 405 HGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHS 464

Query: 305 WV 306
            V
Sbjct: 465 LV 466



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 123/215 (57%), Gaps = 8/215 (3%)

Query: 16  QNVYSSV-RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIVGAIG 73
             V+S + +  N   WN +I G+  +G+   A+  + EMR +G ++ D  T   ++ A+G
Sbjct: 73  HKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVG 132

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            ++  + G+ +H+++ + G+ S ++VQN L+ +YA CG +  A KVF  M E+DLV+WNS
Sbjct: 133 KMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNS 192

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY-FYLMRND 192
           ++ G A +G   EA+ L+ +M    IKPDG T + +LSAC   G +  G ++  Y+++  
Sbjct: 193 VINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVG 252

Query: 193 ASLEPPRAEHYT-AIVGLLGRAGFLNEAESFINSM 226
            +    R  H +  ++ L  R G + EA++  + M
Sbjct: 253 LT----RNLHSSNVLLDLYARCGRVEEAKTLFDEM 283


>gi|449527613|ref|XP_004170804.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like, partial [Cucumis sativus]
          Length = 315

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/292 (37%), Positives = 180/292 (61%), Gaps = 2/292 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  V  ++ ++WNA+IAG+      ++AL+ F  MR  G   D  T+ SI+ A   +
Sbjct: 3   RKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADL 62

Query: 76  SGFKEGKQMHALIFKIGY-DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
              + GK++H  IF +   D +V + N L+ MYA CG+I +A +VF  M ++D  SWNS+
Sbjct: 63  GDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSI 122

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + G A HG++ E++ LF++M + ++KP+  TF+ VL AC HAG + +G  YF LM+N   
Sbjct: 123 IGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNVFK 182

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           +E P  +HY  +V +LGRAG L EA  FI++M   P   +++ LL AC+VHG+ E+  R+
Sbjct: 183 IE-PNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGDVELGRRA 241

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +++L +  ++   YVLLSN+  +   WD    +R LM + G++KK G+S +
Sbjct: 242 NEQLLKMRKDESGDYVLLSNIYASQGEWDGVQKVRKLMDDGGVKKKVGHSLI 293



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 9/163 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S  +   V+  +R ++  SWN+II G    G  E+++  F EM +  +  + 
Sbjct: 92  IDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNE 151

Query: 63  FTITSIVGAIGVISGFKEGKQMHAL---IFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            T  +++ A       +EG+    L   +FKI  + N+     +V +    G + +A   
Sbjct: 152 ITFVAVLVACSHAGKVREGRMYFNLMKNVFKI--EPNIKHYGCMVDILGRAGLLIEAFDF 209

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHG---YSREAVQLFEQMQKTE 158
             +M+ E + + W +LL  C  HG     R A +   +M+K E
Sbjct: 210 IDTMEIEPNAIIWRTLLGACRVHGDVELGRRANEQLLKMRKDE 252



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 12/169 (7%)

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
           A K+F  + ++D+V+WN+++ G      ++EA+++F+ M+    +PD  T L +LSA   
Sbjct: 2   ARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASAD 61

Query: 176 AGFIDKGLQ----YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPG 231
            G ++ G +     F +   D S+         A++ +  + G +  A      M R   
Sbjct: 62  LGDLEIGKKIHRSIFDMCCGDLSVLLS-----NALIDMYAKCGSIGNALEVFQGM-RKKD 115

Query: 232 PSVYKALLSACQVHGNREIAVRSAKRVLDL--WPNDPAIYVLLSNVSKA 278
            S + +++    +HG+ E ++   + +L L   PN+     +L   S A
Sbjct: 116 TSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHA 164


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/298 (36%), Positives = 172/298 (57%), Gaps = 2/298 (0%)

Query: 10  DSSLDFQNVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           D++L+  N +   +   N ++W +IIA     G   +AL+ F +M+  G++ +  TI S+
Sbjct: 323 DTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSL 382

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           + A G IS    GK++H    + G   +V+V + L+ MYA CG I  A + F  M   +L
Sbjct: 383 IPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNL 442

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL 188
           VSWN+++ G A HG ++E +++F  M ++  KPD  TF  VLSAC   G  ++G + +  
Sbjct: 443 VSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNS 502

Query: 189 MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
           M  +  +E P+ EHY  +V LL R G L EA S I  M   P   V+ ALLS+C+VH N 
Sbjct: 503 MSEEHGIE-PKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNL 561

Query: 249 EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +   +A+++  L P +P  Y+LLSN+  +   WD+   IR +M ++G+RK PGYSW+
Sbjct: 562 SLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWI 619



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 106/220 (48%), Gaps = 35/220 (15%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID------ 59
           Y +CD  LD + ++  +  R+ + W+A+IAG+  LG  E+A + F EMR  G++      
Sbjct: 149 YLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSW 208

Query: 60  -----------------------------IDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
                                         D  T++ ++ A+G +     G Q+H  + K
Sbjct: 209 NGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIK 268

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
            G  S+ FV + ++ MY  CG + + ++VF  ++E ++ S N+ L G + +G    A+++
Sbjct: 269 QGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEV 328

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
           F + +  +++ +  T+  ++++C   G   + L+ F  M+
Sbjct: 329 FNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQ 368



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 81/161 (50%)

Query: 29  SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
           S++++I  F         L  FS +    +  D F + S + +   +     G+Q+HA  
Sbjct: 71  SFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFA 130

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
              G+ ++  V + L  MY  C  I DA K+F  M +RD+V W++++ G +  G   EA 
Sbjct: 131 AASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAK 190

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           +LF +M+   ++P+  ++  +L+   + GF D+ +  F +M
Sbjct: 191 ELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMM 231



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 2/138 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      +  +  +   N +SWNA++ G+   G  ++ ++ F  M Q+G   D  T 
Sbjct: 421 YAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTF 480

Query: 66  TSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           T ++ A       +EG +  +++  + G +  +     LV + +  G + +A  +   M 
Sbjct: 481 TCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMP 540

Query: 125 -ERDLVSWNSLLLGCAHH 141
            E D   W +LL  C  H
Sbjct: 541 FEPDACVWGALLSSCRVH 558


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 178/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    +   V+  +  ++ ISW+ II+ +C     ++A    S M + G   + 
Sbjct: 395 ITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNE 454

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F + S++   G ++  + GKQ+HA    IG D    V + L+ MY+  G + +A+K+F S
Sbjct: 455 FALASVLSVCGSMALLEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASKIFDS 514

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +   D+VSW +++ G A HGYS+EA+ LFE +    + PD  TF+ +L+AC HAG +D G
Sbjct: 515 IKNNDIVSWTAMINGYAEHGYSQEAISLFENISSVGLMPDYVTFIGILTACNHAGLVDLG 574

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             Y+ LM N+  + P + EHY  I+ LL RAG L+EAE  + +M       V+  LL AC
Sbjct: 575 FYYYKLMTNEYQIAPSK-EHYGCIIDLLCRAGRLSEAEHMVRNMPFPCDDVVWSTLLRAC 633

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + HG+ + A+ +A+++L L PN    ++ L+N+  A+   ++A  +R LM ++G+ K+PG
Sbjct: 634 RDHGDLDRAIWAAEQMLRLHPNSAGAHITLANIYSASGRREEAAHVRKLMKSKGVIKEPG 693

Query: 303 YSWV 306
           +SW+
Sbjct: 694 WSWI 697



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 122/248 (49%), Gaps = 5/248 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        ++  + T + +SW  +I  +  +G  E+AL  F  MR++ +  + +T 
Sbjct: 297 YSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTF 356

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   ++  K G+Q+H    ++G    + V N ++ +Y+ CG + +A+ VF  M  
Sbjct: 357 ASVISACANLAITKWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTR 416

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D++SW++++       +++EA      M +   KP+      VLS C     ++ G Q 
Sbjct: 417 KDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQV 476

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + Y +     L+     H +A++ +  R+G L EA    +S+  N   S + A+++    
Sbjct: 477 HAYALC--IGLDHETMVH-SALISMYSRSGNLQEASKIFDSIKNNDIVS-WTAMINGYAE 532

Query: 245 HGNREIAV 252
           HG  + A+
Sbjct: 533 HGYSQEAI 540



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 100/212 (47%), Gaps = 2/212 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +V+ ++ TRN +SW A+I G  + G     L  FSEM ++ +  D  T    + A     
Sbjct: 207 SVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESG 266

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               GK +HA   K G++   +V N L  MY+ C   +   ++F  M   D+VSW +L++
Sbjct: 267 LLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIM 326

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
                G    A+  F++M+K+++ P+  TF  V+SAC +      G Q          ++
Sbjct: 327 TYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVD 386

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
                +  +I+ L  + G L EA    + M+R
Sbjct: 387 ALSVSN--SIITLYSKCGLLQEASLVFDGMTR 416



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 1/168 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGV 74
           +++++ +  R++ISW  +IAG+ N  +  +AL  FS M   +G+  D F ++  + A  +
Sbjct: 104 RDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVSVALKACAL 163

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
                 G+ +H    K G  ++VFV + LV MY   G       VF +M  R++VSW ++
Sbjct: 164 GMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTAV 223

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++G  H G S + +  F +M ++++  D  TF V L A   +G +  G
Sbjct: 224 IVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYG 271



 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVV 169
           G I +A  +F+ M  RD +SW +L+ G  +   S EA+ LF  M   + ++ D     V 
Sbjct: 98  GKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVSVA 157

Query: 170 LSAC 173
           L AC
Sbjct: 158 LKAC 161


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 168/301 (55%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D   V++ + TRN +SW A+IAG+      ++ALK F EM   GI+ +  T+
Sbjct: 250 YSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTV 309

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS + A   +    +G+ +H  + +     N  +   LV MY+ CG +++A  VF  +  
Sbjct: 310 TSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPA 369

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+  W +++ G A  G +  ++ LF QM ++ ++P+G TFL VLSAC H G +D+GL+ 
Sbjct: 370 KDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLEL 429

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM  D  LE P  +HY  +V LLGRAG L EA  FI SM   P P V+ AL S C +H
Sbjct: 430 FRLMICDYRLE-PNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIH 488

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
              E+       ++ L P+    Y+LL+N+      W+ A ++R LM  +G+ K P  SW
Sbjct: 489 KAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSW 548

Query: 306 V 306
           +
Sbjct: 549 I 549



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 119/222 (53%), Gaps = 8/222 (3%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++     ++ +SW A+I G    G   +AL+CF EMR +G+++D  T+ S++ A  ++
Sbjct: 158 RRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAML 217

Query: 76  SGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
                G+ +H    + G    +V+V + LV MY+ CG  +DA KVF+ M  R+LVSW +L
Sbjct: 218 RDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGAL 277

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQYFYLMRNDA 193
           + G       +EA+++F++M    I+P+ +T    L+AC   G +D+G   + Y+ R+  
Sbjct: 278 IAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKL 337

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVY 235
            L        TA+V +  + G ++EA   +    + P   VY
Sbjct: 338 GLNSKLG---TALVDMYSKCGCVDEA---LLVFEKLPAKDVY 373



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 1/143 (0%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN I+  F      +  L  +S +R  G+  D  T   ++ A   +   +   Q +A I 
Sbjct: 72  WNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN-ENPFQFYAHIV 130

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
           K G D + FVQN LV  +A CG ++ + ++F    ++D+VSW +L+ GC  +G + EA++
Sbjct: 131 KFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALE 190

Query: 150 LFEQMQKTEIKPDGTTFLVVLSA 172
            F +M+ + ++ D  T + VL A
Sbjct: 191 CFVEMRSSGVEVDEVTVVSVLCA 213


>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/292 (38%), Positives = 181/292 (61%), Gaps = 3/292 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
            +++  +  ++ +SWN++I+G+      + A+  F +M+  G   D  T++SI+ A   +
Sbjct: 371 HDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGL 430

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD-ERDLVSWNSL 134
                G Q+H L+ K  + +++ + N LV MY+ CGAI +A  VF  M+ +RD++SWN++
Sbjct: 431 VDLVLGTQIHQLVTK-AFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAM 489

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + G A+HG++ EA+QLF+ M++  ++P   TF+ VL+AC HAG I++G + F  M N   
Sbjct: 490 IGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHG 549

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           ++P + EHY A+V ++GR G L EA S INSM   P  +V+ ALL AC+VH N E+A  +
Sbjct: 550 IKP-QVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAA 608

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           A+ ++ L P   A YVLL N+      WDDA ++RT+M    ++K  GYS V
Sbjct: 609 AEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQKDAGYSRV 660



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 15/224 (6%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN ISWN++I  +   G    A + F +M    ++ D F+  +++     I   KE    
Sbjct: 287 RNVISWNSMIMCYVRAGDIVSARELFDKM----VERDTFSWNTMISGYVQILDMKEASN- 341

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
              +F    + +    N ++  ++  G++  A+ +F  + E+ LVSWNS++ G   +   
Sbjct: 342 ---LFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDY 398

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID--KGLQYFYLMRNDASLEPPRAEH 202
           + A+ +F QMQ    KPD  T   +LSAC  AG +D   G Q   L+      + P    
Sbjct: 399 KGAMNIFLQMQLEGKKPDRHTLSSILSAC--AGLVDLVLGTQIHQLVTKAFIADLPIN-- 454

Query: 203 YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
             ++V +  R G + EA    + M+       + A++     HG
Sbjct: 455 -NSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHG 497



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 6/143 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++ S    N I+WN +I  +       +A + F EM    I + +  + S  G I   
Sbjct: 77  RELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDI-VSWNLMLS--GYISCG 133

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             F E  +    +F    +++    N ++  YA  G ++ A ++F+ M ER++VSWN+++
Sbjct: 134 GKFVERARN---MFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMV 190

Query: 136 LGCAHHGYSREAVQLFEQMQKTE 158
            G   +G+  +A++ F+ M K +
Sbjct: 191 SGYLMNGHVEKAIEFFKLMPKRD 213



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 24/184 (13%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGA--INDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
           +F+   + ++   N ++  Y  CG   +  A  +F  M E D VSWN++L G A  G   
Sbjct: 110 LFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMD 169

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDASLEPPRAEHY 203
           +A +LF +M +  +     ++  ++S     G ++K +++F LM  R+ ASL        
Sbjct: 170 KAEELFNEMPERNV----VSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLR------- 218

Query: 204 TAIVGLLGRAGFLNEAESFINSMSRNPGP----SVYKALLSACQVHGNREIAVRSAKRVL 259
            A++  L +   L EAE  +     N G       Y  L++    +G + +A   A+++ 
Sbjct: 219 -ALISGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAG---YGQKGMAY-EARKLF 273

Query: 260 DLWP 263
           D  P
Sbjct: 274 DRIP 277



 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 13/144 (9%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G IN+A ++F S +  + ++WN ++          +A QLFE+M   +I     ++ ++L
Sbjct: 71  GRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDI----VSWNLML 126

Query: 171 SA--CCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
           S    C   F+++    F  M     +       +  ++    ++G +++AE   N M  
Sbjct: 127 SGYISCGGKFVERARNMFDQMPETDCVS------WNTMLSGYAKSGMMDKAEELFNEMPE 180

Query: 229 NPGPSVYKALLSACQVHGNREIAV 252
               S + A++S   ++G+ E A+
Sbjct: 181 RNVVS-WNAMVSGYLMNGHVEKAI 203


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/305 (35%), Positives = 172/305 (56%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC        ++     +  I+WNA+++G+ ++   E+    F EM Q G++ +Y
Sbjct: 359 ITMYSRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNY 418

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFS 121
            TI S++     I+  + GK+ H  I K   ++  + + N LV MY+  G + +A KVF 
Sbjct: 419 VTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFD 478

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           S+ +RD V++ S++LG    G     ++LFE+M K EIKPD  T + VL+AC H+G + +
Sbjct: 479 SLTKRDEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQ 538

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G Q  +    D     PR EHY  +  L GRAG LN+A+ FI  M   P  +++  LL A
Sbjct: 539 G-QVLFKRMIDVHGIVPRLEHYACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLLGA 597

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++HGN E+   +A ++L++ P+    YVL++N+  A   W    ++RT M N G+RK P
Sbjct: 598 CRIHGNTEMGEWAAGKLLEMKPDHSGYYVLIANMYAAAGSWRKLAEVRTYMRNLGVRKAP 657

Query: 302 GYSWV 306
           G +WV
Sbjct: 658 GCAWV 662



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 91/191 (47%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+  +  +D Q V  S  T + + WN +I+ +   G   +AL  +  M    I+ D +T 
Sbjct: 126 YTNVNLLVDAQFVTESSNTLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTY 185

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A G    F  G ++H  I     + ++FV N LV MY   G +  A  +F +M  
Sbjct: 186 PSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPR 245

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSWN+++   A  G  +EA QLF  MQ+  ++ +   +  +   C H+G     LQ 
Sbjct: 246 RDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQL 305

Query: 186 FYLMRNDASLE 196
              MR    L+
Sbjct: 306 ISQMRTSIHLD 316



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 122/256 (47%), Gaps = 7/256 (2%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N I WN I  G  + G+   AL+  S+MR + I +D   +   + A   I   K GK++H
Sbjct: 282 NVIIWNTIAGGCLHSGNFRGALQLISQMRTS-IHLDAIAMVVGLNACSHIGAIKLGKEIH 340

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
               +  +D    V+N L+ MY+ C  +  A  +F   +E+ L++WN++L G AH     
Sbjct: 341 GHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYE 400

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF-YLMRNDASLEPPRAEHYT 204
           E   LF +M +  ++P+  T   VL  C     +  G ++  Y+M++    E      + 
Sbjct: 401 EVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLL--WN 458

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV--LDLW 262
           A+V +  R+G + EA    +S+++      Y +++    + G  E  ++  + +  L++ 
Sbjct: 459 ALVDMYSRSGRVLEARKVFDSLTKR-DEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIK 517

Query: 263 PNDPAIYVLLSNVSKA 278
           P+   +  +L+  S +
Sbjct: 518 PDHVTMVAVLTACSHS 533



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 4/199 (2%)

Query: 32  AIIAGFCNLGSGEQALKCFSEMRQ--AGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           A +  F   G    A K F +++   A   +    I S++ A        +GKQ+HA + 
Sbjct: 49  ASLKDFVTHGHLTNAFKTFFQIQHHAASSHLLLHPIGSLLLACTHFKSLSQGKQLHAQVI 108

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
            +G D N  + +RLV  Y     + DA  V  S +  D + WN L+     +G+  EA+ 
Sbjct: 109 SLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTLDPLHWNLLISAYVRNGFFVEALC 168

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL 209
           +++ M   +I+PD  T+  VL AC  +   + GL+    +   +S+E     H  A+V +
Sbjct: 169 VYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIE-ASSMEWSLFVH-NALVSM 226

Query: 210 LGRAGFLNEAESFINSMSR 228
            GR G L  A    ++M R
Sbjct: 227 YGRFGKLEIARHLFDNMPR 245


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/290 (36%), Positives = 175/290 (60%), Gaps = 2/290 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++ +  R+ ISW  +I  +       +AL  F+EM + GI  D  T+ +++ A   +  
Sbjct: 199 LFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGA 258

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              GK++H  I + G++ +V++ + L+ MYA CG+++ +  +F  + E++L  WNS++ G
Sbjct: 259 LDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEG 318

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HGY+ EA+ +F++M++ +IKP+G TF+ VLSAC HAG I++G + F  M  D S+ P
Sbjct: 319 LAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSI-P 377

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P  EHY  +V LL +AG L EA   I +M   P   ++ ALLS C++H N EIA  +A +
Sbjct: 378 PGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANK 437

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK-PGYSWV 306
           ++ L P +   Y LL N++   + W +A  IR  M  +G+ K+ PG SW+
Sbjct: 438 LMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWI 487



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 3/150 (2%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           T++R D ++     Y+ +   N   +NA+I GF       QAL+ + +M +A +    +T
Sbjct: 26  TFNRMDYAVL---AYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYT 82

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++ A G++S  +  + +H  +++ G+DS+VFVQ  LV  Y+  G I ++ +VF  M 
Sbjct: 83  FPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMP 142

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
           ERD+ +W +++ G    G    A +LF+ M
Sbjct: 143 ERDVFAWTTMVSGLVRVGDMSSAGRLFDMM 172



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 110/223 (49%), Gaps = 13/223 (5%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
            +++  + ++G  E++++ F EM +     D F  T++V  +  +       ++    F 
Sbjct: 119 TSLVDFYSSMGRIEESVRVFDEMPER----DVFAWTTMVSGLVRVGDMSSAGRL----FD 170

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
           +  D N+   N L+  YA    ++ A  +F+ M  RD++SW +++   + +   REA+ +
Sbjct: 171 MMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGV 230

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGL 209
           F +M K  I PD  T   V+SAC H G +D G + ++Y+M++  +L+       +A++ +
Sbjct: 231 FNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIG---SALIDM 287

Query: 210 LGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
             + G L+ +      + R      + +++    VHG  E A+
Sbjct: 288 YAKCGSLDRSLLMFFKL-REKNLFCWNSVIEGLAVHGYAEEAL 329



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 2/138 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S      ++  +R +N   WN++I G    G  E+AL  F +M +  I  +  T 
Sbjct: 288 YAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTF 347

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            S++ A       +EG++  A + +       V     +V + +  G + +A ++  +M 
Sbjct: 348 VSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMK 407

Query: 125 -ERDLVSWNSLLLGCAHH 141
            E + V W +LL GC  H
Sbjct: 408 LEPNAVIWGALLSGCKLH 425


>gi|359477774|ref|XP_002282129.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 691

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/294 (37%), Positives = 177/294 (60%), Gaps = 6/294 (2%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +++  +  R+  +WN II G      GE+ LK F +M++ G   D  T TS++     + 
Sbjct: 341 SIFELMPARDATAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTICSDLP 400

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G+Q+HA + K G++  V V N +V +YA CG  N A  +FS+M   D +SWNS++ 
Sbjct: 401 TLHLGRQIHAQVTKTGFNYFVAVSNAMVTLYARCGNSNSALLLFSAMRSHDFISWNSIIC 460

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G AH+G   EA+++FE+M+  +IKP+  TF+ VLSAC HAG +D+G  YF  M+    LE
Sbjct: 461 GLAHNGNGVEAIEVFEKMRSIDIKPNHITFVGVLSACSHAGLVDQGKYYFDFMKYKCCLE 520

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN----PGPSVYKALLSACQVHGNREIAV 252
           P   EHYT IV LLGR G ++EA SF+  M  N    P  SV+ A+L AC++H N ++  
Sbjct: 521 PT-IEHYTCIVDLLGRFGLIDEAMSFLRQMEANGVEVPA-SVWGAVLGACRIHKNMQVGE 578

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            + +R+L++ P++  +Y++L+ +  ++   +DA  +   M  +G++K+P  SW+
Sbjct: 579 IAGERILEIEPHNSGVYIILAEMYLSSGKREDAERVWVRMREKGVKKQPACSWM 632



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 112/277 (40%), Gaps = 41/277 (14%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI---GV 74
           ++  +  R+  SWN +I G       + A++ F EM Q        +  SIV  +   G+
Sbjct: 249 LFQKMPQRDFRSWNEMINGLVRNQRIQDAMRLFVEMPQKC----RRSWNSIVFGLIRNGL 304

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           I      K+ HA + K  +   V   N L+  Y   G ++ A  +F  M  RD  +WN +
Sbjct: 305 I------KEAHAFLEKSPFSDTVSWTN-LIVGYFETGEVDTAVSIFELMPARDATAWNVI 357

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-----------HAGFIDKGL 183
           + G   + +  E ++ F +M++    PD  TF  VL+ C            HA     G 
Sbjct: 358 IWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTICSDLPTLHLGRQIHAQVTKTGF 417

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            YF  + N             A+V L  R G  N A    ++M  +   S + +++    
Sbjct: 418 NYFVAVSN-------------AMVTLYARCGNSNSALLLFSAMRSHDFIS-WNSIICGLA 463

Query: 244 VHGN--REIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
            +GN    I V    R +D+ PN      +LS  S A
Sbjct: 464 HNGNGVEAIEVFEKMRSIDIKPNHITFVGVLSACSHA 500



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 53/213 (24%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++  +  RN +++NA+I G+   G   + +  F EM +                    
Sbjct: 61  QMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMPE-------------------- 100

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                               ++F  N ++      G IN A+++F  M  RD+VSWNS++
Sbjct: 101 -------------------RDIFSYNTMIAGLMKFGDINGASEIFQKMPFRDVVSWNSMI 141

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDA 193
            G   +G   EA+++F  M    +  D  ++ +V++     G +D   ++F  M  R+ A
Sbjct: 142 SGYVSNGLIGEALRVFSGM----VLKDVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRDIA 197

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           S        +T ++  L  AG + EA      M
Sbjct: 198 S--------WTTMISGLASAGRIVEARGLFEDM 222



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 7/174 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y+RC +S     ++S++R+ + ISWN+II G  + G+G +A++ F +MR   I  ++
Sbjct: 428 VTLYARCGNSNSALLLFSAMRSHDFISWNSIICGLAHNGNGVEAIEVFEKMRSIDIKPNH 487

Query: 63  FTITSIVGAIGVISGFKEGKQMHALI-FKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T   ++ A        +GK     + +K   +  +     +V +    G I++A     
Sbjct: 488 ITFVGVLSACSHAGLVDQGKYYFDFMKYKCCLEPTIEHYTCIVDLLGRFGLIDEAMSFLR 547

Query: 122 SMD----ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            M+    E     W ++L  C  H   +      E++   EI+P  +   ++L+
Sbjct: 548 QMEANGVEVPASVWGAVLGACRIHKNMQVGEIAGERI--LEIEPHNSGVYIILA 599



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 109/268 (40%), Gaps = 38/268 (14%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+S +  ++ +SWN +IAG   +G  + A + F EM       D  + T+++  +     
Sbjct: 156 VFSGMVLKDVVSWNLVIAGLVGVGKVDLAEEFFKEMGTR----DIASWTTMISGLASAGR 211

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             E + +    F+     +V   N ++  Y   G I     +F  M +RD  SWN ++ G
Sbjct: 212 IVEARGL----FEDMPVRDVRAWNTMIAGYIENGCIEIGEVLFQKMPQRDFRSWNEMING 267

Query: 138 CAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVV---LSACCHAGFIDKG----------- 182
              +   ++A++LF +M QK     +   F ++   L    HA F++K            
Sbjct: 268 LVRNQRIQDAMRLFVEMPQKCRRSWNSIVFGLIRNGLIKEAHA-FLEKSPFSDTVSWTNL 326

Query: 183 -LQYFYLMRNDAS-----LEPPR-AEHYTAIVGLLGRAGFLNEAESFINSMSRN---PGP 232
            + YF     D +     L P R A  +  I+  LG      E   F   M      P  
Sbjct: 327 IVGYFETGEVDTAVSIFELMPARDATAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDE 386

Query: 233 SVYKALLSACQ----VHGNREIAVRSAK 256
           + + ++L+ C     +H  R+I  +  K
Sbjct: 387 ATFTSVLTICSDLPTLHLGRQIHAQVTK 414



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 20/207 (9%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ +SWN++I+G+ + G   +AL+ FS M    +      I  +VG +G +  
Sbjct: 125 IFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSGMVLKDVVSWNLVIAGLVG-VGKVDL 183

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            +E        FK     ++     ++   A  G I +A  +F  M  RD+ +WN+++ G
Sbjct: 184 AEE-------FFKEMGTRDIASWTTMISGLASAGRIVEARGLFEDMPVRDVRAWNTMIAG 236

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
              +G       LF++M + + +    ++  +++       I   ++ F  M       P
Sbjct: 237 YIENGCIEIGEVLFQKMPQRDFR----SWNEMINGLVRNQRIQDAMRLFVEM-------P 285

Query: 198 PRAEH-YTAIVGLLGRAGFLNEAESFI 223
            +    + +IV  L R G + EA +F+
Sbjct: 286 QKCRRSWNSIVFGLIRNGLIKEAHAFL 312


>gi|225462555|ref|XP_002267326.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Vitis vinifera]
          Length = 708

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 178/298 (59%), Gaps = 5/298 (1%)

Query: 10  DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIV 69
           D S +F   ++ V   + +SW A+I+   + G   +A+   + +++AG   D F   SI 
Sbjct: 413 DDSFEF---FNGVERLDLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIF 469

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-RDL 128
                I+ +++ K +H+L+ K+GY+++VFV + ++  YA CG I +A +VF      RD+
Sbjct: 470 NCCAGIAAYRQTKSVHSLVVKMGYEAHVFVASAVIDAYAKCGDIENARRVFDQTSRFRDV 529

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL 188
           + +N++++  AHHG  REAV+ FE+M+   ++P   TF+ V+SAC H G +++G  +F  
Sbjct: 530 ILFNTMVMAYAHHGLVREAVETFEKMKLATLEPSQATFVSVISACSHLGLVEQGDIFFKS 589

Query: 189 MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
           M  D  ++P   ++Y  +V L  R GFL +A+  I +M   P P+++++LL+ C++HGN+
Sbjct: 590 MNLDYGMDPS-PDNYGCLVDLFSRNGFLEDAKHIIETMPFPPWPAIWRSLLNGCRIHGNK 648

Query: 249 EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           E+   +AK++L L P + A YVLLS V      W DA  +R  M  RG+ K PG SW+
Sbjct: 649 ELGEWAAKKLLQLVPENDAAYVLLSKVYSEEGSWSDAAKVRKGMIERGLWKDPGCSWI 706



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 86/179 (48%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        V+  +  +N +SW  +++G    G  E  L  + EM + G+  + F +
Sbjct: 2   YTKCGFLAGGLKVFGEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNEFAL 61

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             +  A   + G + G  +H    K+G + N FV + ++ MYA  G I DA +VF  MD 
Sbjct: 62  GCVTKACAALGGKELGLCVHCFALKVGMEKNPFVGSSILNMYAKLGDIEDAERVFECMDN 121

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             +  WN+++ G A   Y  E++++   MQ   I  D  TF+  L  C   G ++ G Q
Sbjct: 122 LVVGCWNAMIGGYAQCSYGFESLKIVSVMQYKGISMDAFTFINALKGCLVVGNLNFGRQ 180



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 90/183 (49%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     D + V+  +       WNA+I G+     G ++LK  S M+  GI +D FT 
Sbjct: 103 YAKLGDIEDAERVFECMDNLVVGCWNAMIGGYAQCSYGFESLKIVSVMQYKGISMDAFTF 162

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            + +    V+     G+Q+H LI +     +  V N L+ MY   G    A KVF  + +
Sbjct: 163 INALKGCLVVGNLNFGRQIHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQD 222

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D++SWN++  G +    +RE  + F ++  T +KP+  TF ++   C  A  +  GLQ+
Sbjct: 223 KDIISWNTVFAGLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQF 282

Query: 186 FYL 188
             L
Sbjct: 283 HCL 285



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 137/307 (44%), Gaps = 16/307 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +SRC +      V+ S   ++  + N +I+G+       +AL  F  +   G++ D 
Sbjct: 302 INMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNLNGLGLEADE 361

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T +S + A       K G+QMH  I K G+ S  +V + L+  Y   G ++D+ + F+ 
Sbjct: 362 CTFSSALEACFRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVGFGLLDDSFEFFNG 421

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++  DLVSW +++    H GYS EA+ L  ++++   KPD   F  + + C        G
Sbjct: 422 VERLDLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIFNCC-------AG 474

Query: 183 LQYFYLMRNDASLEPPRAEH-----YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
           +  +   ++  SL             +A++    + G +  A    +  SR     ++  
Sbjct: 475 IAAYRQTKSVHSLVVKMGYEAHVFVASAVIDAYAKCGDIENARRVFDQTSRFRDVILFNT 534

Query: 238 LLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDC-WDDAGDI--RTLMYN 294
           ++ A   HG    AV + ++ + L   +P+    +S +S  +     + GDI  +++  +
Sbjct: 535 MVMAYAHHGLVREAVETFEK-MKLATLEPSQATFVSVISACSHLGLVEQGDIFFKSMNLD 593

Query: 295 RGIRKKP 301
            G+   P
Sbjct: 594 YGMDPSP 600



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  ++ ++ ISWN + AG        +  + F ++   G+  +  T + +    G    
Sbjct: 216 VFDRLQDKDIISWNTVFAGLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALD 275

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G Q H L F+ G      V + L+ M++ CGA+  A  VF S   + + + N ++ G
Sbjct: 276 LVSGLQFHCLAFRFGISDEASVTSSLINMFSRCGAMRMACLVFDSAPFKSIHTCNEMISG 335

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
              + ++ EA+ LF  +    ++ D  TF   L AC
Sbjct: 336 YNLNCHNAEALNLFCNLNGLGLEADECTFSSALEAC 371



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 37/78 (47%)

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
           MY  CG +    KVF  M  ++LVSW  ++ G   +G     + ++ +M +T + P+   
Sbjct: 1   MYTKCGFLAGGLKVFGEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNEFA 60

Query: 166 FLVVLSACCHAGFIDKGL 183
              V  AC   G  + GL
Sbjct: 61  LGCVTKACAALGGKELGL 78


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 173/302 (57%), Gaps = 4/302 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +SRC      +  +  ++ R++ISW+A+I G+   G   +AL+ F +M++  I    
Sbjct: 244 ISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRK 303

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F + S++ A   +    +G+ +H    +     +  +   LV MYA CG I+ A +VF  
Sbjct: 304 FVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEK 363

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  +++ SWN+++ G A HG + +A+ LF +M   +I P+  TF+ VL+AC H G + KG
Sbjct: 364 MSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKG 420

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L  F  MR +  +EP + EHY  IV LLGRAG L EAE  ++S+   P P+V+ ALL AC
Sbjct: 421 LTIFNSMRKEYGVEP-QIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGAC 479

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + HGN E+  R  K +L+L P +   Y LLSN+      W++ G++R LM  RGI+  PG
Sbjct: 480 RKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPG 539

Query: 303 YS 304
            S
Sbjct: 540 TS 541



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 44/241 (18%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           + + WNA+I G+   G  E A + F  M                                
Sbjct: 204 DAVCWNAMIDGYLRFGEVEAARELFEGMPDR----------------------------- 234

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
                    S +   N ++  ++ CG +  A + F  M ERD +SW++++ G    G   
Sbjct: 235 ---------SMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFM 285

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYT 204
           EA+++F QMQK +I+P       VLSAC + G +D+G   + Y  RN   L+       T
Sbjct: 286 EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLG---T 342

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
           ++V +  + G ++ A      MS N   S + A++    +HG  E A+    + +D++PN
Sbjct: 343 SLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAEDAIDLFSK-MDIYPN 400

Query: 265 D 265
           +
Sbjct: 401 E 401



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICG-----AINDANKVFSSMDERDLVSWNSLLL 136
           KQ HALI + G+  + ++   LV  YA        +   + +VF  + + ++  WN ++ 
Sbjct: 52  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 111

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            C  +    +A+ L+ +M     +P+  T+  VL AC  +G + +G+Q
Sbjct: 112 VCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQ 159


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 178/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y  C+  +D + ++  VR ++ +SWN++I G+   G   ++L+ F  M   G   D 
Sbjct: 305 IEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQ 364

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  +++GA   I+  + G  +H+ + K G+D+N  V   LV MY+ CG++  + +VF  
Sbjct: 365 VTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDE 424

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ++ LVSW++++ G   HG  REA+ + + M+   + PD   F  +LSAC HAG + +G
Sbjct: 425 MPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEG 484

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + FY M  + +++P  + HY+ +V LLGRAG L+EA   I +M   P   ++ ALL+A 
Sbjct: 485 KEIFYKMEKEYNVKPALS-HYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTAS 543

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N ++A  SA++V D+ P   + Y+ LSN+  A   WDD   +R ++  +G++K PG
Sbjct: 544 RLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPG 603

Query: 303 YSWV 306
            S++
Sbjct: 604 CSFI 607



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 129/268 (48%), Gaps = 14/268 (5%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  R+  SWN +I+G+        A   F  M +AG+  D  T+  ++ A   +  
Sbjct: 218 VFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKA 277

Query: 78  FKEGKQMHALIFK--IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
            KEGK +H    +  IG + N F  N L+ MY  C  + DA ++F  +  +D VSWNS++
Sbjct: 278 VKEGKVIHGYAVRNSIG-NYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMI 336

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
           LG A +G + E+++LF +M      PD  TF+ VL AC     +  G+  + YL++    
Sbjct: 337 LGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFD 396

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALLSACQVHGN-RE-I 250
                    TA+V +  + G L  +    + M   P  S+  + A+++   +HG  RE I
Sbjct: 397 ANTIVG---TALVDMYSKCGSLACSRRVFDEM---PDKSLVSWSAMVAGYGLHGRGREAI 450

Query: 251 AVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
           ++    +   + P++     +LS  S A
Sbjct: 451 SILDGMKANSVIPDNGVFTSILSACSHA 478



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 1/187 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C      + ++  +  +N   WN +I G+ + G   ++L  + EM   G   D FT 
Sbjct: 105 YAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTY 164

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A G +   + G+++H+ +   G +S+++V N L+ MYA  G +  A  VF  M E
Sbjct: 165 PFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAE 224

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           RDL SWN+++ G A +  S  A  +F+ M K  +  D TT L +LSAC     + +G + 
Sbjct: 225 RDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVI 284

Query: 185 YFYLMRN 191
           + Y +RN
Sbjct: 285 HGYAVRN 291



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 78  FKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
           FK+G+Q+HA +      ++N ++  +L   YA CG ++ A  +F  +  ++   WN ++ 
Sbjct: 75  FKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIR 134

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           G A +G   +++ L+ +M     + D  T+  VL AC
Sbjct: 135 GYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKAC 171


>gi|356537365|ref|XP_003537198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Glycine max]
          Length = 722

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/291 (38%), Positives = 171/291 (58%), Gaps = 2/291 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++S V  ++ ISWN+II+GF   G   Q L+ FS +    +  + ++++ ++     +S
Sbjct: 431 QIFSGVPYKSLISWNSIISGFLMNGHPLQGLEQFSALLSTQVKPNAYSLSLVLSICSSMS 490

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               GKQ+H  I + G+ S V + N LV MYA CG+++ A +VF +M ERD ++WN+++ 
Sbjct: 491 AMSHGKQVHGYILRHGFSSEVSLGNALVTMYAKCGSLDKALRVFDAMVERDTITWNAIIS 550

Query: 137 GCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
             A HG   EAV  FE MQ +  IKPD  TF  VLSAC HAG +D G++ F  M      
Sbjct: 551 AYAQHGRGEEAVCCFEAMQTSPGIKPDQATFTSVLSACSHAGLVDDGIRIFDTMVKVYGF 610

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
             P  +H++ IV LLGR+G+L+EAE  I S       ++  +L SAC  HGN  +    A
Sbjct: 611 -VPSVDHFSCIVDLLGRSGYLDEAERVIKSGYFGAHSNICWSLFSACAAHGNLGLGRTVA 669

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +L+   N+P++YVLLSN+  A   W++A ++R +M   G  K+PG SW+
Sbjct: 670 RLILERDHNNPSVYVLLSNICAAAGQWEEAANLREMMREFGTIKQPGCSWI 720



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 137/277 (49%), Gaps = 12/277 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS     ++ QN++  +  R+ +SWN +++ F      E+A+  + +MR+ GI+ D FT 
Sbjct: 323 YSGFGEVIEVQNIFEGMEERDVVSWNIMVSMFLQENLEEEAMLSYLKMRREGIEPDEFTY 382

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A       +  + +H+L+ K G    + V N LV  Y   G I  A ++FS +  
Sbjct: 383 GSLLAAT---DSLQVVEMIHSLLCKSGL-VKIEVLNALVSAYCRHGKIKRAFQIFSGVPY 438

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           + L+SWNS++ G   +G+  + ++ F  +  T++KP+  +  +VLS C     +  G Q 
Sbjct: 439 KSLISWNSIISGFLMNGHPLQGLEQFSALLSTQVKPNAYSLSLVLSICSSMSAMSHGKQV 498

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + Y++R+  S E        A+V +  + G L++A    ++M      + + A++SA   
Sbjct: 499 HGYILRHGFSSEVSLG---NALVTMYAKCGSLDKALRVFDAMVERDTIT-WNAIISAYAQ 554

Query: 245 HGNREIAV---RSAKRVLDLWPNDPAIYVLLSNVSKA 278
           HG  E AV    + +    + P+      +LS  S A
Sbjct: 555 HGRGEEAVCCFEAMQTSPGIKPDQATFTSVLSACSHA 591



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 4/170 (2%)

Query: 7   SRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT 66
           ++ DS      V+  +   +   WNA+I G    G+ + A   F +M + G+  D +T  
Sbjct: 123 AKLDSVEHALKVFDGIPKGHIAVWNAVITGCAEKGNRDFAFGLFRDMNKMGVKADKYTFA 182

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE- 125
           +++ ++  +  F  G+ +H+++ K G+     V N L+ MY  CG + DA +VF   +E 
Sbjct: 183 TML-SLCSLELFDYGRHVHSVVIKSGFLGWTSVVNSLITMYFKCGCVVDACEVFEEAEEG 241

Query: 126 --RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
             RD VS+N+++ G A    S +A  +F  MQK    P   TF+ V+S+C
Sbjct: 242 GSRDYVSYNAMIDGFASVERSEDAFLIFRDMQKGCFDPTEVTFVSVMSSC 291



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 6/173 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID 59
           I  Y +C   +D   V+       +R+ +S+NA+I GF ++   E A   F +M++   D
Sbjct: 219 ITMYFKCGCVVDACEVFEEAEEGGSRDYVSYNAMIDGFASVERSEDAFLIFRDMQKGCFD 278

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
               T  S++ +    S  + G Q  +   K+G+   V V N ++ MY+  G + +   +
Sbjct: 279 PTEVTFVSVMSSC---SSLRAGCQAQSQAIKMGFVGCVAVNNAMMTMYSGFGEVIEVQNI 335

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           F  M+ERD+VSWN ++          EA+  + +M++  I+PD  T+  +L+A
Sbjct: 336 FEGMEERDVVSWNIMVSMFLQENLEEEAMLSYLKMRREGIEPDEFTYGSLLAA 388



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 97/203 (47%), Gaps = 12/203 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDID 61
           +  Y++C S      V+ ++  R+ I+WNAII+ +   G GE+A+ CF  M+ + GI  D
Sbjct: 518 VTMYAKCGSLDKALRVFDAMVERDTITWNAIISAYAQHGRGEEAVCCFEAMQTSPGIKPD 577

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVF 120
             T TS++ A        +G ++   + K+ G+  +V   + +V +    G +++A +V 
Sbjct: 578 QATFTSVLSACSHAGLVDDGIRIFDTMVKVYGFVPSVDHFSCIVDLLGRSGYLDEAERVI 637

Query: 121 SS--MDERDLVSWNSLLLGCAHH---GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
            S        + W SL   CA H   G  R   +L   +++    P  + ++++ + C  
Sbjct: 638 KSGYFGAHSNICW-SLFSACAAHGNLGLGRTVARLI--LERDHNNP--SVYVLLSNICAA 692

Query: 176 AGFIDKGLQYFYLMRNDASLEPP 198
           AG  ++      +MR   +++ P
Sbjct: 693 AGQWEEAANLREMMREFGTIKQP 715



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 33/179 (18%)

Query: 27  QISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHA 86
            I  N ++A         Q+LK F     +    D++ +++ + A         G Q+HA
Sbjct: 11  HIKLNHMLAALARSNQHTQSLKLFVH-AHSSFTPDHYILSTAITAAANARRAAFGAQLHA 69

Query: 87  LIFKIGYDSNVFVQNRLVFMYA-----------------------------ICG---AIN 114
           L  + G  ++  V N L+ +YA                              C    ++ 
Sbjct: 70  LAVRTGLGAHSHVANSLLSLYAKAHRDLASVKLTFQEIDCPDAYSWTTLLSACAKLDSVE 129

Query: 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            A KVF  + +  +  WN+++ GCA  G    A  LF  M K  +K D  TF  +LS C
Sbjct: 130 HALKVFDGIPKGHIAVWNAVITGCAEKGNRDFAFGLFRDMNKMGVKADKYTFATMLSLC 188


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 166/301 (55%), Gaps = 25/301 (8%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC    +  + +  +  +++I+WN +++GF   G  E+ALK F  M Q+G+  + FT 
Sbjct: 491 YARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTF 550

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + A   ++  K+GKQ+HA + K G+     V N L+ +Y  CG+  DA   FS M E
Sbjct: 551 VSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSE 610

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWN+++  C+ HG   EA+  F+QM+K                        +GL Y
Sbjct: 611 RNEVSWNTIITSCSQHGRGLEALDFFDQMKK------------------------EGLSY 646

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M +   +  PR +HY  ++ + GRAG L+ A+ F+  M       V++ LLSAC+VH
Sbjct: 647 FKSMSDKYGIR-PRPDHYACVIDIFGRAGQLDRAKKFVEEMPIAADAMVWRTLLSACKVH 705

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +AK +L+L P+D A YVLLSN    T  W +   +R +M +RG+RK+PG SW
Sbjct: 706 KNIEVGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMRDRGVRKEPGRSW 765

Query: 306 V 306
           +
Sbjct: 766 I 766



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 108/191 (56%), Gaps = 1/191 (0%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           L I  YS+    L  + V+  +  R+ +SW A+++G+   G GE+AL  + +M +AG+  
Sbjct: 82  LLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALWLYRQMHRAGVVP 141

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
             + ++S++ +      F +G+ +HA  +K G+ S  FV N L+ +Y  CG+   A +VF
Sbjct: 142 TPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERVF 201

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M  RD V++N+L+ G A   +   A+++FE+MQ + + PD  T   +L+AC   G + 
Sbjct: 202 YDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQ 261

Query: 181 KGLQ-YFYLMR 190
           KG Q + YL +
Sbjct: 262 KGTQLHSYLFK 272



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 5/232 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V   ++ ++ +SW ++IAG+      + AL  F EM++ GI  D   + S +     I
Sbjct: 400 RRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGI 459

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              ++G Q+HA ++  GY  +V + N LV +YA CG I +A   F  ++ +D ++WN L+
Sbjct: 460 KAMRQGLQIHARVYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLV 519

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G A  G   EA+++F +M ++ +K +  TF+  LSA  +   I +G Q +  +++   S
Sbjct: 520 SGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHS 579

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
            E    E   A++ L G+ G   +A+   + MS     S +  ++++C  HG
Sbjct: 580 FE---TEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS-WNTIITSCSQHG 627



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 98/186 (52%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC S    + V+  +  R+ +++N +I+G      GE AL+ F EM+ +G+  D 
Sbjct: 185 ITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDC 244

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            TI+S++ A   +   ++G Q+H+ +FK G  S+  ++  L+ +Y  CG +  A  +F+ 
Sbjct: 245 VTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNL 304

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            +  ++V WN +L+         ++ +LF QMQ   I+P+  T+  +L  C   G ID G
Sbjct: 305 GNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLG 364

Query: 183 LQYFYL 188
            Q   L
Sbjct: 365 EQIHSL 370



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 12/199 (6%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N + WN I+  F  +    ++ + F +M+ AGI  + FT   I+           G+Q+H
Sbjct: 309 NVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIH 368

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
           +L  K G++S+++V   L+ MY+  G +  A +V   + E+D+VSW S++ G   H Y +
Sbjct: 369 SLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCK 428

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-----YFYLMRNDASLEPPRA 200
           +A+  F++MQK  I PD       +S C     + +GLQ     Y      D S+     
Sbjct: 429 DALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSI----- 483

Query: 201 EHYTAIVGLLGRAGFLNEA 219
             + A+V L  R G + EA
Sbjct: 484 --WNALVNLYARCGRIREA 500



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 50/100 (50%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           ++HA     G   +  V N L+ +Y+  G +  A +VF  +  RD VSW ++L G A +G
Sbjct: 63  EIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              EA+ L+ QM +  + P       VLS+C  A    +G
Sbjct: 123 LGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG 162



 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 30/172 (17%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S  D +  +S +  RN++SWN II      G G +AL  F +M++ G  + Y
Sbjct: 589 ISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDFFDQMKKEG--LSY 646

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F       ++    G +     +A +  I               +   G ++ A K    
Sbjct: 647 FK------SMSDKYGIRPRPDHYACVIDI---------------FGRAGQLDRAKKFVEE 685

Query: 123 MD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLS 171
           M    D + W +LL  C  H    + +++ E   K   E++P  +   V+LS
Sbjct: 686 MPIAADAMVWRTLLSACKVH----KNIEVGELAAKHLLELEPHDSASYVLLS 733


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 170/299 (56%), Gaps = 4/299 (1%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           R D +  F   +  +  ++ + WN +I  F   G  E A+  F +M  +G   D  ++++
Sbjct: 530 RLDLAYQF---FRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSA 586

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
            + A         GK++H  + +  + S+ FV + L+ MY+ CG +  A  VF  MD ++
Sbjct: 587 TLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKN 646

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
            VSWNS++    +HG  RE + LF +M +  I+PD  TFLV++SAC HAG +D+G+ YF 
Sbjct: 647 EVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFR 706

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN 247
            M  +  +   R EH+  +V L GRAG L+EA   I SM   P    + +LL AC++HGN
Sbjct: 707 CMTEEYGI-CARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHGN 765

Query: 248 REIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            E+A  ++K +++L PN+   YVLLSNV      W+    +R+LM  +G++K PGYSW+
Sbjct: 766 VELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQKIPGYSWI 824



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 90/167 (53%), Gaps = 6/167 (3%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---DIDYFTITSIVG 70
           D + ++  +  R+ I WN ++ G+   G    AL  F EMR + +    + +  + S+  
Sbjct: 230 DAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCA 289

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
             G++   + G Q+H L+ + G++S+  V N ++ MY+ CG + DA K+F  M + D V+
Sbjct: 290 TRGIV---RAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVT 346

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           WN L+ G   +G++ EAV LF+ M  + +K D  TF   L +   +G
Sbjct: 347 WNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSG 393



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 110/225 (48%), Gaps = 4/225 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C S  D  N++  ++    + WN +I GF  LG  + AL  F  M  + +  D +T 
Sbjct: 121 YVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTF 180

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A G ++     K +H L   +G+  ++F+ + L+ +Y   G I+DA  +F  +  
Sbjct: 181 PYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPV 240

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD + WN +L G   +G    A+  F++M+ + +KP+  +F+ +LS C   G +  G+Q 
Sbjct: 241 RDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQL 300

Query: 186 FYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
             L +R+    +P  A     I+ +  + G L +A    + M + 
Sbjct: 301 HGLVIRSGFESDPTVA---NTIITMYSKCGNLFDARKIFDIMPQT 342



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 92/193 (47%), Gaps = 11/193 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C +  D + ++  +   + ++WN +IAG+   G  ++A+  F  M  +G+ +D 
Sbjct: 320 ITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDS 379

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S + ++      K  K++H+ I + G   +V++++ LV +Y   G +  A K F  
Sbjct: 380 ITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQ 439

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-------- 174
               D+    +++ G   +G + EA+ LF  + +  + P+  T   VL AC         
Sbjct: 440 NTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLG 499

Query: 175 ---HAGFIDKGLQ 184
              H   + KGL+
Sbjct: 500 KELHCDILKKGLE 512



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 74/143 (51%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
            A+I+G+   G   +AL  F  + Q G+  +  T+ S++ A   ++  K GK++H  I K
Sbjct: 449 TAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILK 508

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
            G ++   V + + +MYA  G ++ A + F  M  +D V WN +++  + +G    A+ L
Sbjct: 509 KGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDL 568

Query: 151 FEQMQKTEIKPDGTTFLVVLSAC 173
           F QM  +  K D  +    LSAC
Sbjct: 569 FRQMGTSGTKFDSVSLSATLSAC 591



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 5/174 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      ++V+  +  +N++SWN+IIA + N G   + L  F EM +AGI  D+ T 
Sbjct: 626 YSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTF 685

Query: 66  TSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             I+ A G      EG      +  + G  + +     +V +Y   G +++A     SM 
Sbjct: 686 LVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMP 745

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
              D  +W SLL  C  HG + E  +L  +    E+ P+ + + V+LS   HAG
Sbjct: 746 FTPDAGTWGSLLGACRLHG-NVELAKLASK-HLVELDPNNSGYYVLLSN-VHAG 796



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 49/95 (51%)

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           ++ +Q+HA +   G + ++ + +R++ MY +C +  D   +F  +     + WN L+ G 
Sbjct: 93  QQVRQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGF 152

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +  G    A+  F +M  + + PD  TF  V+ AC
Sbjct: 153 SMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKAC 187


>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 176/292 (60%), Gaps = 4/292 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIVGAIGVIS 76
           ++  +  +N ISW A+I G+      E+ALK FS+M + G +  +  T  SI+ A   ++
Sbjct: 286 LFDRMPQKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGTYVSILSACSDLA 345

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS--MDERDLVSWNSL 134
           G  EG+Q+H LI K  +  N  V + L+ MY+  G +  A K+F +  + +RDL+SWNS+
Sbjct: 346 GLVEGQQIHQLISKSVHQENEVVTSALINMYSKSGELIAARKMFDNGLVCQRDLISWNSM 405

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           +   AHHG+ +EA+++++QM+K   KP   T+L +L AC HAG ++KG+++F  +  D S
Sbjct: 406 IAVYAHHGHGKEAIEMYDQMRKHGFKPSEVTYLNLLFACSHAGLVEKGMEFFKELVRDES 465

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           L P R EHYT +V L GRAG L +  +FIN        S Y A+LSAC VH    IA   
Sbjct: 466 L-PLREEHYTCLVDLCGRAGRLKDVLNFINCDDARLSRSFYGAILSACNVHSEVSIAKEV 524

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            K+VL+   +D   YV++SN+  A+   + A ++R  M  +G++K+PG SWV
Sbjct: 525 VKKVLETGSDDAGTYVMMSNIYAASGKREKAAEMRMKMKEKGLKKQPGCSWV 576



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 15/176 (8%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R+ ++W  +I G+  LG+  +A + F  +          +  ++V    ++
Sbjct: 66  RKLFDGLPERDVVTWTDVITGYIKLGNMREARELFDRVD---------SRKNVVTWTAMV 116

Query: 76  SGFKEGKQMHA--LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           SG+   KQ+     +F+   + N+   N ++  YA  G I+ A ++F  M ER+ VSWN+
Sbjct: 117 SGYLRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKALELFDEMPERNTVSWNT 176

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           ++      G   EA+ LFE+M    IK D  ++  ++      G +D+  + F  M
Sbjct: 177 MIKALVQRGRIDEAMNLFERMP---IK-DVISWTAMVDGLAKNGKVDEARRLFDCM 228



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 105/252 (41%), Gaps = 49/252 (19%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           R D +L+    +  +  RN +SWN +I      G  ++A+  F  M           I  
Sbjct: 155 RIDKALEL---FDEMPERNTVSWNTMIKALVQRGRIDEAMNLFERM----------PIKD 201

Query: 68  IVGAIGVISGF-KEGKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++    ++ G  K GK   A  +F    + N+   N ++  Y     I++A+++F  M E
Sbjct: 202 VISWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYTYNNRIDEADQLFQVMPE 261

Query: 126 RDLVSWNSLLLGCAHH--------------------------GY-----SREAVQLFEQM 154
           RD  SWN+++ G   +                          GY     + EA+++F +M
Sbjct: 262 RDFASWNTMITGFIRNREINRACGLFDRMPQKNVISWTAMITGYVENKENEEALKVFSKM 321

Query: 155 QKTE-IKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA 213
            +   +KP+  T++ +LSAC     + +G Q   L+    S+        +A++ +  ++
Sbjct: 322 LRDGCVKPNVGTYVSILSACSDLAGLVEGQQIHQLI--SKSVHQENEVVTSALINMYSKS 379

Query: 214 GFLNEAESFINS 225
           G L  A    ++
Sbjct: 380 GELIAARKMFDN 391



 Score = 40.4 bits (93), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 47/185 (25%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ----------------- 153
           G + +A K+F  + ERD+V+W  ++ G    G  REA +LF++                 
Sbjct: 60  GKLAEARKLFDGLPERDVVTWTDVITGYIKLGNMREARELFDRVDSRKNVVTWTAMVSGY 119

Query: 154 MQKTEIKPDGTTFL-----------VVLSACCHAGFIDKGLQYFYLM--RNDASLEPPRA 200
           ++  ++    T F             ++     +G IDK L+ F  M  RN  S      
Sbjct: 120 LRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKALELFDEMPERNTVS------ 173

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALLSACQVHGNREIAVRSAKRV 258
             +  ++  L + G ++EA   +N   R P   V  + A++     +G     V  A+R+
Sbjct: 174 --WNTMIKALVQRGRIDEA---MNLFERMPIKDVISWTAMVDGLAKNGK----VDEARRL 224

Query: 259 LDLWP 263
            D  P
Sbjct: 225 FDCMP 229


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/299 (36%), Positives = 179/299 (59%), Gaps = 5/299 (1%)

Query: 7   SRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFTI 65
           S+ D++   Q V+ ++  R+ +SWN +I G+   G   +A++ +++M    G+     T 
Sbjct: 319 SKIDAA---QKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTF 375

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   + G ++G +MHAL  K G + +V+V   L+ +YA CG + +A  +F  M  
Sbjct: 376 VSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPR 435

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R    WN+++ G   HG+  +A+ LF QMQ+ EIKPD  TF+ +L+AC HAG +D+G  +
Sbjct: 436 RSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSF 495

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM+    +  P A+HYT +V +LGRAG L+EA  FI SM   P  +V+ ALL AC++H
Sbjct: 496 FDLMQTVYGIV-PIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIH 554

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           GN E+   +++ + +L P +   YVL+SN+      WD    +R+L+  + ++K PG+S
Sbjct: 555 GNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWS 613



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 137/267 (51%), Gaps = 11/267 (4%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  R+ ++WN+II+     G    A++ F  M ++G+  D  T+ S+  A+     
Sbjct: 225 VFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGD 284

Query: 78  FKEGKQMHALIFKIGYD-SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               K +H  + + G+D  ++   N +V MYA    I+ A KVF ++ +RD+VSWN+L+ 
Sbjct: 285 ELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLIT 344

Query: 137 GCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQYFYL-MRNDAS 194
           G   +G + EA++++  M   E +KP   TF+ VL A  + G + +G++   L ++   +
Sbjct: 345 GYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLN 404

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS-RNPGPSVYKALLSACQVHGN--REIA 251
           L+       T ++ L  + G L EA      M  R+ GP  + A+++   VHG+  + ++
Sbjct: 405 LD---VYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGP--WNAIIAGLGVHGHGAKALS 459

Query: 252 VRSAKRVLDLWPNDPAIYVLLSNVSKA 278
           + S  +  ++ P+      LL+  S A
Sbjct: 460 LFSQMQQEEIKPDHVTFVSLLAACSHA 486



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 80/175 (45%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y R     +   V+  +  R+  +WNA+++G C       A+     M   G+  D 
Sbjct: 109 VHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDA 168

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T++S++    V+        MH    K G    +FV N L+ +Y   G + +A+ VF  
Sbjct: 169 VTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGG 228

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           M  RDLV+WNS++      G    AV+LF  M ++ + PD  T + + SA    G
Sbjct: 229 MALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCG 283



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 102/241 (42%), Gaps = 18/241 (7%)

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGY-DSNVFVQNRLVFMYAICGAINDANKV 119
           D FT   +V A     G     Q+HA   ++G    NVF    LV  Y   G + +A +V
Sbjct: 68  DSFTFPPLVRAA---PGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRV 124

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M ERD+ +WN++L G   +  + +AV L  +M    +  D  T   VL  C   G  
Sbjct: 125 FDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLG-- 182

Query: 180 DKGL---QYFYLMRNDASLEPPRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
           D+ L    + Y +++  S      E +   A++ + G+ G L EA      M+       
Sbjct: 183 DRALALVMHVYAVKHGLS-----GELFVCNALIDVYGKLGMLTEAHWVFGGMALR-DLVT 236

Query: 235 YKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294
           + +++SA +  G    AV     +++     P +  L+S  S    C D+ G      Y 
Sbjct: 237 WNSIISANEQGGKVAAAVELFHGMMESGVC-PDVLTLVSLASAVAQCGDELGAKSVHCYV 295

Query: 295 R 295
           R
Sbjct: 296 R 296



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C   ++   ++  +  R+   WNAIIAG    G G +AL  FS+M+Q  I  D+ T 
Sbjct: 417 YAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTF 476

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            S++ A        +G+    L+  + G          +V M    G +++A +   SM 
Sbjct: 477 VSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMP 536

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            + D   W +LL  C  HG + E  ++  Q    E+ P+   + V++S
Sbjct: 537 IKPDSAVWGALLGACRIHG-NVEMGKVASQ-NLFELDPENVGYYVLMS 582


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 102/292 (34%), Positives = 169/292 (57%), Gaps = 1/292 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R+ +S  AII+G+  LG  E+AL+ F  +++ G+  +Y T TS++ A+  +
Sbjct: 214 RGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGL 273

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +    GKQ+H  + +    S V +QN L+ MY+ CG +  A ++F ++ ER ++SWN++L
Sbjct: 274 AALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAML 333

Query: 136 LGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           +G + HG  RE ++LF  M  + ++KPD  T L VLS C H G  DKG+  FY M +   
Sbjct: 334 VGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKI 393

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
              P ++HY  +V +LGRAG +  A  F+  M   P  +++  LL AC VH N +I    
Sbjct: 394 SVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFV 453

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             ++L + P +   YV+LSN+  +   W+D   +R LM  + + K+PG SW+
Sbjct: 454 GHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWI 505



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 138/250 (55%), Gaps = 6/250 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y +CDS  D ++V+  +  RN +SW A+I+ +   G   QAL  F +M ++G + + 
Sbjct: 100 IVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNE 159

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  +++ +    SGF  G+Q+H+ I K+ Y+++V+V + L+ MYA  G I++A  +F  
Sbjct: 160 FTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQC 219

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ERD+VS  +++ G A  G   EA++LF ++Q+  ++ +  T+  VL+A      +D G
Sbjct: 220 LPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHG 279

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            Q + +L+R++    P       +++ +  + G L  A    +++      S + A+L  
Sbjct: 280 KQVHNHLLRSEV---PSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVIS-WNAMLVG 335

Query: 242 CQVHGN-REI 250
              HG  RE+
Sbjct: 336 YSKHGEGREV 345



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 73/129 (56%), Gaps = 1/129 (0%)

Query: 52  EMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICG 111
            M   G+D ++    +++         +EG+++HA + K  Y   V+++ RL+  Y  C 
Sbjct: 48  HMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCD 107

Query: 112 AINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           ++ DA  VF  M ER++VSW +++   +  GY+ +A+ LF QM ++  +P+  TF  VL+
Sbjct: 108 SLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLT 167

Query: 172 ACC-HAGFI 179
           +C   +GF+
Sbjct: 168 SCIGSSGFV 176


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 178/302 (58%), Gaps = 4/302 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++ ++  + + V+ ++  R+ +S  AII+G+   G  E+AL  F ++   G+  ++ T 
Sbjct: 156 YAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTF 215

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T++V A+  ++    GKQ+HALI +      V +QN L+ MY+ CG +  + +VF +M E
Sbjct: 216 TTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLE 275

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R +VSWN++L+G   HG   E + LF+ + K E+KPD  T L VLS C H G +D+GL  
Sbjct: 276 RSVVSWNAMLMGYGRHGLGHEVISLFKDLHK-EVKPDSVTLLAVLSGCSHGGLVDEGLDI 334

Query: 186 F-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           F  +++  ++L      HY  I+ LLGR+G L +A + I +M     PS++ +LL AC+V
Sbjct: 335 FDTVVKEQSAL--LHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRV 392

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N  +    A+++L++ P +   YV+LSN+  A   W D   +R LM  + + K+PG S
Sbjct: 393 HANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQS 452

Query: 305 WV 306
           W+
Sbjct: 453 WI 454



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 128/276 (46%), Gaps = 34/276 (12%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y RC +  D +NV   +  R+ +SW  +I+G+       +AL  F +M +AG   + 
Sbjct: 52  VTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNE 111

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T+ +++ +        +GKQ+H+L+ K  ++S++FV + L+ MYA    I +A +VF +
Sbjct: 112 YTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDT 171

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--------- 173
           + ERD+VS  +++ G A  G   EA+ LF Q+    ++ +  TF  +++A          
Sbjct: 172 LPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYG 231

Query: 174 --CHAGFIDKGLQYFYLMRN-------------------DASLEPPRAEHYTAIVGLLGR 212
              HA  + K L +F  ++N                   D  LE         ++G  GR
Sbjct: 232 KQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMG-YGR 290

Query: 213 AGFLNEAESFINSMSR--NPGPSVYKALLSACQVHG 246
            G  +E  S    + +   P      A+LS C  HG
Sbjct: 291 HGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCS-HG 325



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 59/110 (53%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           EG+Q+HA +    Y   VF+  RLV MY  CGA++DA  V   M ER +VSW +++ G +
Sbjct: 28  EGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYS 87

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
                 EA+ LF +M +    P+  T   VL++C     I +G Q   L+
Sbjct: 88  QTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLL 137


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 174/301 (57%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++ +  +D + V+  +  +N IS+NA+I G+ +     +AL+ F EMR      + FT 
Sbjct: 398 YAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTF 457

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A   ++  + G+Q H  + K+G D   FV N LV MYA CG+I +A K+F+S   
Sbjct: 458 AALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIW 517

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+V WNS++   A HG + EA+ +F +M K  I+P+  TF+ VLSAC HAG ++ GL +
Sbjct: 518 RDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNH 577

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M        P  EHY  +V LLGR+G L EA+ FI  M   P   V+++LLSAC++ 
Sbjct: 578 FNSMPGFGI--KPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIA 635

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+   +A+  +   P D   Y+LLSN+  +   W D   +R  M +  + K+PG SW
Sbjct: 636 GNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSW 695

Query: 306 V 306
           +
Sbjct: 696 I 696



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 144/300 (48%), Gaps = 10/300 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+     + ++  +  +N ISW  +I+G+       +A+K F EM + G   D F  
Sbjct: 297 YTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFAC 356

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ + G     ++G+Q+HA   K   +S+ FV+N L+ MYA    + DA KVF  M E
Sbjct: 357 TSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAE 416

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++++S+N+++ G +      EA++LF +M+    KP+  TF  +++A  +   +  G Q+
Sbjct: 417 QNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQF 476

Query: 186 F-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
              L++      P       A+V +  + G + EA    NS S       + +++S    
Sbjct: 477 HNQLVKMGLDFCPFVT---NALVDMYAKCGSIEEARKMFNS-SIWRDVVCWNSMISTHAQ 532

Query: 245 HGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           HG  E A+   + ++   + PN      +LS  S A    D      ++    G   KPG
Sbjct: 533 HGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSM---PGFGIKPG 589



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 98/179 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+  +  + + V+  +  +  ++W  IIAG+   G    +L+ F++MR+  +  D + +
Sbjct: 196 YSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVV 255

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A  ++   + GKQ+HA + + G + +V V N L+  Y  C  +    K+F  M  
Sbjct: 256 SSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVV 315

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++++SW +++ G   + +  EA++LF +M +   KPDG     VL++C     +++G Q
Sbjct: 316 KNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQ 374



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 106/192 (55%), Gaps = 2/192 (1%)

Query: 7   SRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTI 65
           S+ D   + + V+  +  +N I+W+++++ +   G  E+AL  F ++ R++G   + F +
Sbjct: 95  SKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVL 154

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +   ++G Q+H  + + G+D +V+V   L+  Y+  G I +A  VF  + E
Sbjct: 155 ASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSE 214

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +  V+W +++ G    G S  +++LF QM++T + PD      VLSAC    F++ G Q 
Sbjct: 215 KTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQI 274

Query: 185 YFYLMRNDASLE 196
           + Y++R    ++
Sbjct: 275 HAYVLRRGTEMD 286



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           K +H  I   G  S+ F+ N L+ + +    +++A  VF  M  ++L++W+S++   +  
Sbjct: 69  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 128

Query: 142 GYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           GYS EA+ +F  +Q K+   P+      V+ AC   G ++KG Q
Sbjct: 129 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQ 172


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 179/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    + + V+  +  ++ +SW+ +I G+    + ++A+  F E+R++   +D F +
Sbjct: 152 YVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVL 211

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDS-NVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +SI+G     +  ++GKQMHA   K+ Y    + V N ++ MY  CG   +A+ +F  M 
Sbjct: 212 SSIIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREML 271

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ER++VSW  ++ G   HG   +AV+LF +MQ+  I+PD  T+L VLSAC H+G I +G +
Sbjct: 272 ERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKK 331

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF ++ ++  ++ P+ EHY  +V LLGR G L EA++ I  M   P   +++ LLS C++
Sbjct: 332 YFSILCSNQKIK-PKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRM 390

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HG+ E+  +  + +L    N+PA YV++SN+      W ++  IR  +  +G++K+ G S
Sbjct: 391 HGDVEMGKQVGEILLRREGNNPANYVMVSNMYAHAGYWKESEKIRETLKRKGLKKEAGRS 450

Query: 305 WV 306
           WV
Sbjct: 451 WV 452



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 65/105 (61%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           +GKQ+H ++ K+G+D    V N ++ MY+ CG + +A +VF+++  R+++SWN+++ G  
Sbjct: 22  QGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYT 81

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +     EA+ LF +M++    PDG T+   L AC  A    +G+Q
Sbjct: 82  NERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQ 126


>gi|225217042|gb|ACN85326.1| EMB2261 putative [Oryza brachyantha]
          Length = 626

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 180/301 (59%), Gaps = 3/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S ++ + V+  +  RN++SW A++ G+C  G  E+ +  F EM +   D D++++
Sbjct: 288 YAKCGSMVEARKVFDRMLVRNEVSWCALLGGYCQNGEYEKVVALFREMDKK--DGDWYSL 345

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A   +S  K GK++H    ++G   +V V++ LV +YA CGA++ A  VF +   
Sbjct: 346 GTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYAYTVFEASTV 405

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ ++WN+++ G A +G+   A+ LF++M +   +PD  +F+ VL AC H G +++G +Y
Sbjct: 406 RNTITWNAMIGGFAQNGHGERAINLFDRMVREGPRPDYISFVSVLFACSHTGMVEQGRKY 465

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M N+ ++ P   EHY  +V LL R   L EAE  IN        S++ A+L A   H
Sbjct: 466 FNSMSNNYTIAPG-IEHYNCMVDLLSRVELLEEAEDLINKSPFRGDSSLWAAILGASATH 524

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++A R AK++++L P     YVLL NV +    W+DA +IR LM +R ++K+PG SW
Sbjct: 525 SNPDVAERVAKKMMELQPQYHLSYVLLENVYRTVGRWEDALEIRRLMESRKVKKEPGMSW 584

Query: 306 V 306
           +
Sbjct: 585 I 585



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 3/180 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFT 64
           Y    +  D Q  +  +R  + I + ++I+ F      E+A++ F  M    G+  D  T
Sbjct: 186 YGHASAPSDAQKAFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCT 245

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++ A+G +    +G+Q HA +   G   NV V++  + MYA CG++ +A KVF  M 
Sbjct: 246 FGSMMTALGNLKRENQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGSMVEARKVFDRML 305

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            R+ VSW +LL G   +G   + V LF +M K +   D  +   VL AC     +  G +
Sbjct: 306 VRNEVSWCALLGGYCQNGEYEKVVALFREMDKKD--GDWYSLGTVLRACAGLSSVKPGKE 363



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 14/179 (7%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYFTITSIVGAIGVIS 76
           +  +  R+ ++ ++I+A F   G   +AL     M     D+  +    ++ V A  V+ 
Sbjct: 96  FDDLPRRDVVAHSSILAAFLRAGMPRRALASLRSMLAEADDVSPNAHAFSAAVKACSVLR 155

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G  +H  I   G+  +  V + LV MY    A +DA K F  M   D + + SL+ 
Sbjct: 156 DRNAGACLHGSILVRGFGDDDIVLSALVDMYGHASAPSDAQKAFEEMRAPDGICYTSLIS 215

Query: 137 GCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSAC-----------CHAGFIDKGL 183
               + +  EAV+ F  M     ++PDG TF  +++A             HA  + +GL
Sbjct: 216 AFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRENQGRQAHAQVVTRGL 274


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/294 (37%), Positives = 172/294 (58%), Gaps = 1/294 (0%)

Query: 13  LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           L  + V+     +N +SWNA+I G+ + G   + L  F +M+ AG+  D  T+ S++ A 
Sbjct: 192 LASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSAC 251

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
             +    +G+ +HA I K G   + FV   LV MY+ CG+I  A +VF+S   +D+ +WN
Sbjct: 252 AHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWN 311

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           S++ G + HG  + A+Q+F +M     KP+  TF+ VLSAC  AG +D+G + F LM + 
Sbjct: 312 SIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHV 371

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
             ++ P  EHY  +V LLGR G L EAE  +  M +     V+++LL AC+ HGN E+A 
Sbjct: 372 HGIQ-PTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAE 430

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           R A+++L+L P + + +V LSN+  +   W D  ++R  M  +G+RK PG S +
Sbjct: 431 RVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMI 484



 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 149/314 (47%), Gaps = 40/314 (12%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
            +++S +   N   WN II  + N  + E AL  F +M  A +  D +T T  + + G  
Sbjct: 62  HSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSF 121

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           SG +EG+Q+H  + K G   ++F+QN L+ +YA CG I DA  +   M ERD+VSWN+LL
Sbjct: 122 SGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALL 181

Query: 136 --------------------------------LGCAHHGYSREAVQLFEQMQKTEIKPDG 163
                                            G +H G   E + LFE MQ   +KPD 
Sbjct: 182 SAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDN 241

Query: 164 TTFLVVLSACCHAGFIDKG-LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESF 222
            T + VLSAC H G + +G   + Y+ +N  S++   A   TA+V +  + G + +A   
Sbjct: 242 CTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVA---TALVDMYSKCGSIEKALEV 298

Query: 223 INSMSRNPGPSVYKALLSACQVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATD 280
            NS  R    S + +++S    HG+ + A++  S   V    PN+     +LS  S+A  
Sbjct: 299 FNSCLRK-DISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRA-G 356

Query: 281 CWDDAGDIRTLMYN 294
             D+  ++  LM +
Sbjct: 357 LLDEGREMFNLMVH 370



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S      V++S   ++  +WN+II+G    GSG+ AL+ FSEM   G   +  T 
Sbjct: 286 YSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTF 345

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A        EG++M  L+  + G    +     +V +    G + +A ++   M 
Sbjct: 346 VCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMP 405

Query: 125 ERDL-VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           +++  V W SLL  C +HG    A ++ +++   E+ P  ++  V LS
Sbjct: 406 QKEASVVWESLLGACRNHGNVELAERVAQKL--LELSPQESSSFVQLS 451



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 16/199 (8%)

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI---CGAINDANKV 119
           F    I+    + +   E  Q HA I K G   + F  +RL+   +      AI  A+ +
Sbjct: 5   FPPPPILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSI 64

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           FS +   +   WN+++   A+      A+ +F QM    + PD  TF   L +C     +
Sbjct: 65  FSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGV 124

Query: 180 DKGLQ-YFYLMR----NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
           ++G Q + ++++    +D  ++         ++ L    G + +A   ++ M      S 
Sbjct: 125 EEGRQIHGHVLKTGLGDDLFIQ-------NTLIHLYASCGCIEDARHLLDRMLERDVVS- 176

Query: 235 YKALLSACQVHGNREIAVR 253
           + ALLSA    G  E+A R
Sbjct: 177 WNALLSAYAERGLMELASR 195


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C    +  ++++   +RN + W A++ G+        AL+ F  M +  +  +  ++
Sbjct: 284 YANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSL 343

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS + +   +     G+++HA+  K+G +S++FV N LV MY  CG IND   VF+ M  
Sbjct: 344 TSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSR 403

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++VSWNS+++GCA HG+ R A+ LF QM +T + PD  T   +LSAC H+G + KG  +
Sbjct: 404 KNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCF 463

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F     +  +E    EHY+++V LLGR G L EAE+ I+ M       V+ ALLS+   H
Sbjct: 464 FKHFGKNFGIEMTN-EHYSSMVDLLGRYGQLEEAEALIHIMPGKANYMVWLALLSSSINH 522

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +A R+AK VLDL PN  A Y LLSN+  +T  W +   IR  M + GI K+PG SW
Sbjct: 523 SNVHVAERAAKCVLDLQPNCSAAYTLLSNLYASTGKWTEVSKIRKKMKDEGILKQPGSSW 582

Query: 306 V 306
           +
Sbjct: 583 I 583



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 4/233 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   ++  +  RN ISW ++I G  + G   +AL  F +M  A       T+   + A  
Sbjct: 192 DAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKM-LASFKATSSTLACALTACA 250

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            I     G Q+H LI K GY  N ++   L+  YA C  I++A+ +F+    R++V W +
Sbjct: 251 NICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTA 310

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           LL G   +    +A+Q+F+ M +  + P+ ++    L++CC    +D+G +  + + +  
Sbjct: 311 LLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGRE-VHAVAHKL 369

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
            LE       + +V +  + G +N+  +    MSR    S + +++  C  HG
Sbjct: 370 GLESDIFVSNSLVV-MYTKCGHINDGIAVFTRMSRKNVVS-WNSIIVGCAQHG 420



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 78/160 (48%), Gaps = 9/160 (5%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   ++  +  ++ ISWN+++ G    G    A   F +M +  + + + TI + +   G
Sbjct: 99  DALKLFYEMPVKDLISWNSMLKGCLKCGDLTMACNMFDKMSERNV-VSWTTIINGLLEFG 157

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +       ++   +F++    +V   N +V  +   G + DA ++F  M  R+++SW S
Sbjct: 158 RV-------EVAECLFRVMPTKDVTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTS 210

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           ++ G  H+G S EA+ +F +M  +  K   +T    L+AC
Sbjct: 211 VIGGLDHNGRSFEALVVFHKMLAS-FKATSSTLACALTAC 249



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 42/80 (52%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ Y++C    D   V++ +  +N +SWN+II G    G G  AL  F++M +  +D D 
Sbjct: 382 VVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDE 441

Query: 63  FTITSIVGAIGVISGFKEGK 82
            T+  ++ A G      +G+
Sbjct: 442 ITLAGLLSACGHSGMLTKGR 461



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 107 YAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
           YA  G + DA K+F  M  +DL+SWNS+L GC   G    A  +F++M +  +
Sbjct: 91  YADEGRLEDALKLFYEMPVKDLISWNSMLKGCLKCGDLTMACNMFDKMSERNV 143


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 106/314 (33%), Positives = 181/314 (57%), Gaps = 14/314 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++ +   D + ++  ++ R+  SWNA++ G+      E  L  F ++ + G  +D+ ++
Sbjct: 479 YAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSL 538

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKI-------GYDSNVFVQNRLVFMYAICGAINDANK 118
           + ++ + G +   + GKQ HA++ K+         DS + + N L+ MY+ CG+I DA +
Sbjct: 539 SILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQ 598

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           VF  M+ +D+ SW +++ GCAHHG + EA+QLFE+M+   IKP+  TFL +L AC H G 
Sbjct: 599 VFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGL 658

Query: 179 IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGP------ 232
           + +G  YF  M ND  L P   EHY  ++ L GR+G  + A+S +        P      
Sbjct: 659 VQEGSYYFDSMYNDYGLSPS-IEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDIL 717

Query: 233 SVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLM 292
           +++K LL AC      ++ V +A ++L+L P D A Y+LL+N+  ++  W+DA  +R  M
Sbjct: 718 NLWKVLLGACHASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAM 777

Query: 293 YNRGIRKKPGYSWV 306
            ++G+RK+ G SW+
Sbjct: 778 RDKGLRKEVGCSWI 791



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 93/183 (50%), Gaps = 5/183 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR--QAGIDIDYF 63
           Y +C +      ++  +  ++ +SWNA+IA     G GE AL  F  M   +  +  +  
Sbjct: 269 YGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRV 328

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T  S++ A+  +S  + G+++HA IF++  + +  + N L+  Y+ C  +  A ++F  +
Sbjct: 329 TFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERL 388

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             RD++SWNS+L G   +        +F++M  + I+PD  +  ++ +A   A     GL
Sbjct: 389 LLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNA---ASRDSSGL 445

Query: 184 QYF 186
            YF
Sbjct: 446 IYF 448



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 6/175 (3%)

Query: 3   ILTYSRCDSSLDFQNVY--SSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-D 59
           I  YSRC    D Q V+  +S+   + + WN+IIA +   G   + L+ F +M   G+  
Sbjct: 163 ITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVA 222

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
               T  S+V A G     K G  +H  I K G ++   + N LV  Y  CG +  A+++
Sbjct: 223 PTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATN-LWNSLVTFYGKCGNLQHASQL 281

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE--IKPDGTTFLVVLSA 172
           F  +  +D+VSWN+++      G    A+ LF +M K E  ++P+  TFL +LSA
Sbjct: 282 FERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSA 336



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 129/269 (47%), Gaps = 13/269 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++ +   R+ ISW+A+IA +   G+  QA   F +M   G+  + F++ S++      
Sbjct: 75  QQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCST 134

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF--SSMDERDLVSWNS 133
                 +Q+H    + G+  +  ++   + MY+ CG + DA +VF  +S+   D++ WNS
Sbjct: 135 GEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNS 194

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKG-LQYFYLMRN 191
           ++     HG   E ++LF +M     + P   T+  V++AC  +G    G + +  +++ 
Sbjct: 195 IIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIK- 253

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
            A LE      + ++V   G+ G L  A      +SR    S + A+++A +  G  E A
Sbjct: 254 -AGLEATNL--WNSLVTFYGKCGNLQHASQLFERISRKDVVS-WNAMIAANEQRGEGENA 309

Query: 252 VRSAKRVLD----LWPNDPAIYVLLSNVS 276
           +   +R+L     + PN      LLS VS
Sbjct: 310 LGLFRRMLKVEPPVQPNRVTFLSLLSAVS 338



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 126/286 (44%), Gaps = 20/286 (6%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCF---SEMRQAGID 59
           I  YS+C      + ++  +  R+ ISWN+++AG+      EQ  +CF     M  +GI+
Sbjct: 369 ITFYSKCREVGKAREIFERLLLRDIISWNSMLAGY---EQNEQQGRCFDIFKRMMLSGIE 425

Query: 60  IDYFTITSIVGAIGVISG----FKEGKQMHALIFKIGYDSNVF--VQNRLVFMYAICGAI 113
            D  ++T I  A    S     F+ GK++H  I +      V   V N ++ MYA    I
Sbjct: 426 PDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRI 485

Query: 114 NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            DA K+F  M  RD  SWN+++ G + +    + + +F  + K     D  +  ++L++C
Sbjct: 486 ADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSC 545

Query: 174 CHAGFIDKGLQYFYLMR-----NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
                +  G Q+  ++       D   +        A++ +  + G + +A      M R
Sbjct: 546 GRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMER 605

Query: 229 NPGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLL 272
               S + A+++ C  HG    A++  +R+    + PN      LL
Sbjct: 606 KDVFS-WTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALL 650



 Score = 40.4 bits (93), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 35/69 (50%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C S  D   V+  +  ++  SW A+I G  + G   +AL+ F  M+  GI  + 
Sbjct: 584 ISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQ 643

Query: 63  FTITSIVGA 71
            T  +++ A
Sbjct: 644 VTFLALLMA 652



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 35/64 (54%)

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
           A ++F +   RD++SW++L+   +  G   +A  LF++M    ++P+G +   +L   C 
Sbjct: 74  AQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCS 133

Query: 176 AGFI 179
            G I
Sbjct: 134 TGEI 137


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 169/301 (56%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + ++  +  +N + WN++I G+C +GS  + ++   EM  + +  D FT+
Sbjct: 253 YVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTV 312

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + ++ A   +  F  G  +H    K G   +VF+   L+ MYA CG I  A KVF  M+E
Sbjct: 313 SGVLSACAQMGAFNLGNWVHRFAEKKGI-WDVFIGTALIDMYAKCGFIGAARKVFDQMNE 371

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++ +WN++L G A HG +  A++LF +M+++  +PD  TFL VL AC H+G ++ G QY
Sbjct: 372 RNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQY 431

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM     + PPR EHY  +V LLGRAG L EA   I  M   P   V+ ALLSAC +H
Sbjct: 432 FDLMLQYYKI-PPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIH 490

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN EI   +A  ++ L   D   YV+L+N+  +   ++    +R +M  +GI K  G S 
Sbjct: 491 GNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCSM 550

Query: 306 V 306
           +
Sbjct: 551 I 551



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 127/245 (51%), Gaps = 8/245 (3%)

Query: 11  SSLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFTITSI 68
           + LD+   V++  +  +   +NA+I  + +  +   A+  +++MR    I  D +T   +
Sbjct: 52  ACLDYATQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFV 111

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
             A       ++GK++H +I +IGY+ + F+Q+ L+  Y +CG I +A +VF   D +D+
Sbjct: 112 FKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDV 171

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YF 186
           V WN+L+ G A  G   ++  +F++M +  E++P+  T + ++ AC  +  +  G   + 
Sbjct: 172 VFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHG 231

Query: 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA-CQVH 245
           Y+M++    E  + E   A++ L  + G+L+ A    + +       V+ +L+   CQ+ 
Sbjct: 232 YMMKDMVLREGVKLE--AALINLYVKCGYLDGARKLFDEIPEK-NTVVWNSLICGYCQIG 288

Query: 246 GNREI 250
              E+
Sbjct: 289 SLNEV 293



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 6/250 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFT 64
           Y  C    + Q V+     ++ + WNA+I G+   G    +   F EM +   +  +  T
Sbjct: 150 YMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGT 209

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           +  ++ A       K G+ +H  + K +     V ++  L+ +Y  CG ++ A K+F  +
Sbjct: 210 MMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEI 269

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            E++ V WNSL+ G    G   E ++L  +M  + +KPD  T   VLSAC   G  + G 
Sbjct: 270 PEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGN 329

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
                       +       TA++ +  + GF+  A    + M+     + + A+LS   
Sbjct: 330 WVHRFAEKKGIWDVFIG---TALIDMYAKCGFIGAARKVFDQMNER-NVATWNAILSGYA 385

Query: 244 VHGNREIAVR 253
            HG  E A+ 
Sbjct: 386 SHGQAESAIE 395


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 178/302 (58%), Gaps = 4/302 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++ ++  + + V+ ++  R+ +S  AII+G+   G  E+AL  F ++   G+  ++ T 
Sbjct: 188 YAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTF 247

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T++V A+  ++    GKQ+HALI +      V +QN L+ MY+ CG +  + +VF +M E
Sbjct: 248 TTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLE 307

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R +VSWN++L+G   HG   E + LF+ + K E+KPD  T L VLS C H G +D+GL  
Sbjct: 308 RSVVSWNAMLMGYGRHGLGHEVISLFKDLHK-EVKPDSVTLLAVLSGCSHGGLVDEGLDI 366

Query: 186 F-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           F  +++  ++L      HY  I+ LLGR+G L +A + I +M     PS++ +LL AC+V
Sbjct: 367 FDTVVKEQSAL--LHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRV 424

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N  +    A+++L++ P +   YV+LSN+  A   W D   +R LM  + + K+PG S
Sbjct: 425 HANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQS 484

Query: 305 WV 306
           W+
Sbjct: 485 WI 486



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 102/187 (54%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y RC +  D +NV   +  R+ +SW  +I+G+       +AL  F +M +AG   + 
Sbjct: 84  VTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNE 143

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T+ +++ +        +GKQ+H+L+ K  ++S++FV + L+ MYA    I +A +VF +
Sbjct: 144 YTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDT 203

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ERD+VS  +++ G A  G   EA+ LF Q+    ++ +  TF  +++A      +D G
Sbjct: 204 LPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYG 263

Query: 183 LQYFYLM 189
            Q   L+
Sbjct: 264 KQVHALI 270



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 59/110 (53%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           EG+Q+HA +    Y   VF+  RLV MY  CGA++DA  V   M ER +VSW +++ G +
Sbjct: 60  EGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYS 119

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
                 EA+ LF +M +    P+  T   VL++C     I +G Q   L+
Sbjct: 120 QTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLL 169


>gi|224088569|ref|XP_002308477.1| predicted protein [Populus trichocarpa]
 gi|222854453|gb|EEE92000.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 108/292 (36%), Positives = 167/292 (57%), Gaps = 7/292 (2%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  RN ++WNA+I GF  +G  E+A+  F EM + G+    +T    + A   I+ 
Sbjct: 181 LFKQMPERNIVTWNAMIGGFSQMGQNEEAVNLFVEMIREGLVPCQYTFPCAIIAAANIAA 240

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G+  HA   K   + +VFV N L+  YA CG++ D+ ++F  + ER +VSWN+++ G
Sbjct: 241 LEMGRSFHACAIKTMGEFSVFVGNSLISFYAKCGSMEDSLRLFYELPERTIVSWNAVICG 300

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G    AV  +E+M+ T ++PD  T L +L AC HAG +DKG  YF    N A LE 
Sbjct: 301 FAQNGRGENAVDFYERMRNTGLRPDSVTLLGLLWACNHAGLVDKGYSYF----NRARLEH 356

Query: 198 P---RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           P   + +HY  +V LL R G   EA+ F+  +  NPG   +KALL  C++H N E+   +
Sbjct: 357 PSLLKPKHYACMVDLLSRCGCFKEAQEFLRDLPFNPGVGFWKALLGGCKIHSNTELGALA 416

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            + +LDL P D + Y++LSN   A   W DA  IR  ++ RG+++ P  SW+
Sbjct: 417 GRNILDLDPKDASSYIMLSNAHSAAGRWQDASVIRQEIHARGLKRIPASSWI 468



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 76/157 (48%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           IL    C  S +   V+ ++   + +S   II  F  L    +A++ FS M    +  + 
Sbjct: 34  ILKPEHCHFSRNALQVFDTIPDLDVVSATTIIGQFARLHQYREAIQLFSRMLFLNVTPNE 93

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  +++ +   +     G+Q  A   K+G +  VFV + ++  YA  G+I +A + F  
Sbjct: 94  FTFGTVIHSSTSLGDLNLGRQFQACAMKMGLNYMVFVGSAVLDSYAKLGSIQEAQRAFED 153

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
           +   ++VS+ +L+ G    G   EA +LF+QM +  I
Sbjct: 154 IQHPNIVSYTALIHGYLKKGRFEEAFELFKQMPERNI 190



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 14/144 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D   ++  +  R  +SWNA+I GF   G GE A+  +  MR  G+  D  T+
Sbjct: 270 YAKCGSMEDSLRLFYELPERTIVSWNAVICGFAQNGRGENAVDFYERMRNTGLRPDSVTL 329

Query: 66  TSIVGAI---GVI----SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
             ++ A    G++    S F   +  H  + K  + +       +V + + CG   +A +
Sbjct: 330 LGLLWACNHAGLVDKGYSYFNRARLEHPSLLKPKHYAC------MVDLLSRCGCFKEAQE 383

Query: 119 VFSSMDERDLVS-WNSLLLGCAHH 141
               +     V  W +LL GC  H
Sbjct: 384 FLRDLPFNPGVGFWKALLGGCKIH 407



 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 4/104 (3%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           +++H++ FK    SN F+ +  +     C    +A +VF ++ + D+VS  +++   A  
Sbjct: 16  RKIHSVAFK----SNHFLAHEYILKPEHCHFSRNALQVFDTIPDLDVVSATTIIGQFARL 71

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
              REA+QLF +M    + P+  TF  V+ +    G ++ G Q+
Sbjct: 72  HQYREAIQLFSRMLFLNVTPNEFTFGTVIHSSTSLGDLNLGRQF 115


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 178/304 (58%), Gaps = 30/304 (9%)

Query: 6   YSRCDSSLDFQ-NVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           Y++C  S+D+   VY     + RN   WN+I+AG+ N G  +++   F EM ++ I+ D 
Sbjct: 424 YAKC-GSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDV 482

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ +IV  +                          ++  LV MY+ CGAI  A  VF +
Sbjct: 483 LTMVTIVNLL-------------------------VLETALVDMYSKCGAITKARTVFDN 517

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+ +++VSWN+++ G + HG S+EA+ L+E+M K  + P+  TFL +LSAC H G +++G
Sbjct: 518 MNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEG 577

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+ F  M+ D ++E  +AEHYT +V LLGRAG L +A+ F+  M   P  S + ALL AC
Sbjct: 578 LRIFTSMQEDYNIEA-KAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGAC 636

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH + ++   +A+R+ +L P +P  YV++SN+  A   W +  DIR +M  +G++K PG
Sbjct: 637 RVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPG 696

Query: 303 YSWV 306
            SW+
Sbjct: 697 VSWI 700



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 142/273 (52%), Gaps = 10/273 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA--GIDI 60
           I  Y++CD       V+  +  RNQ++WN+II+     G    AL  F  M+++  GI  
Sbjct: 217 IDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQP 276

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D FT T+++          +G+Q+HA + +     N+ V+  LV MY+ CG +N A ++F
Sbjct: 277 DQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIF 336

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           + M ER+  SWNS++ G   +G ++EA++LF+QMQ   IKPD  +   +LS+C       
Sbjct: 337 NRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQ 396

Query: 181 KGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKAL 238
           KG + + +++RN    E         +V +  + G ++ A + +  ++ ++   +++ ++
Sbjct: 397 KGRELHNFIVRNTMEEEGILQ---VVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSI 453

Query: 239 LSACQVHGNREIAVRSAKRVLDLWPNDPAIYVL 271
           L+    + N+ +   S    L++  +D    VL
Sbjct: 454 LAG---YANKGLKKESFNHFLEMLESDIEYDVL 483



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 123/246 (50%), Gaps = 7/246 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN  +WN +I  +  +    +A   F  M + G+  D FT  S +   G +
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGAL 188

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                GKQ+H+ +   G+  + FV N L+ MYA C       KVF  M ER+ V+WNS++
Sbjct: 189 RSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSII 248

Query: 136 LGCAHHGYSREAVQLFEQMQKTE--IKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
              A  G+  +A+ LF +MQ++E  I+PD  TF  +L+ C +    ++G Q + +L+R +
Sbjct: 249 SAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRAN 308

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            +         T +V +    G LN A+   N M+     S + +++   Q +G  + A+
Sbjct: 309 ITKNIIVE---TELVHMYSECGRLNYAKEIFNRMAERNAYS-WNSMIEGYQQNGETQEAL 364

Query: 253 RSAKRV 258
           R  K++
Sbjct: 365 RLFKQM 370



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 3/135 (2%)

Query: 42  SGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQN 101
           +G  + K  S   +   D++    +S++      + F+ GK +H  +   GY+ + ++  
Sbjct: 51  NGPDSPKPTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMT 110

Query: 102 RLVFMYAICGAIND---ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
           +++ +YA  G ++D   A K+F  M ER+L +WN+++L  A      EA  +F++M K  
Sbjct: 111 KILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIG 170

Query: 159 IKPDGTTFLVVLSAC 173
           + PD  TF   L  C
Sbjct: 171 VCPDNFTFASALRVC 185


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/298 (35%), Positives = 171/298 (57%), Gaps = 1/298 (0%)

Query: 9   CDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           C   L  + ++  +  RN++SW+A+I G+      ++AL  F  M+ +GID D  T+  +
Sbjct: 220 CQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGV 279

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           + A   ++  + G   H  +   G+ ++  + N L+ MY+ CG I+ A +VF+ MD  D+
Sbjct: 280 LPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDI 339

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL 188
           VSWN++++G   HG   EA+ LF  +    +KPD  TF+ +LS+C H+G + +G  +F  
Sbjct: 340 VSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDA 399

Query: 189 MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
           M  D S+  PR EH   +V +LGRAG ++EA  FI +M   P   ++ ALLSAC++H N 
Sbjct: 400 MSRDFSI-VPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNI 458

Query: 249 EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           E+    +K++  L P     +VLLSN+  A   WDDA  IR    + G++K PG SW+
Sbjct: 459 ELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWI 516



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 92/168 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C+  +  + ++  +   + I WN II  +   G  + A+  +  M   G+  + +T 
Sbjct: 53  YLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTY 112

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   +   ++G ++H+     G +S+VFV   LV  YA CG + +A ++FSSM  
Sbjct: 113 PFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH 172

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           RD+V+WN+++ GC+ +G   +AVQL  QMQ+  I P+ +T + VL  C
Sbjct: 173 RDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTC 220



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 118/276 (42%), Gaps = 45/276 (16%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C   ++ Q ++SS+  R+ ++WNA+IAG    G  + A++   +M++ GI  +  TI
Sbjct: 154 YAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTI 213

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++                                        C  +  A K+F  M  
Sbjct: 214 VGVL--------------------------------------PTCQCLLYARKIFDVMGV 235

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL-Q 184
           R+ VSW++++ G       +EA+ +F  MQ + I PD TT L VL AC H   +  G   
Sbjct: 236 RNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCS 295

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + YL+    + +        A++ +  + G ++ A    N M R+   S + A++    +
Sbjct: 296 HGYLIVRGFATDTLIC---NALIDMYSKCGKISFAREVFNRMDRHDIVS-WNAMIIGYGI 351

Query: 245 H--GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
           H  G   + +      L L P+D     LLS+ S +
Sbjct: 352 HGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHS 387



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 95/199 (47%), Gaps = 9/199 (4%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             E K++H    K   +++  V ++L  +Y  C  +  A ++F  +    ++ WN ++  
Sbjct: 24  LTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRA 83

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G    A+ L+  M    ++P+  T+  VL AC     I+ G++    + + A +  
Sbjct: 84  YAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE----IHSHAKMFG 139

Query: 198 PRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
             ++ +  TA+V    + G L EA+   +SMS     + + A+++ C ++G  + AV+  
Sbjct: 140 LESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVA-WNAMIAGCSLYGLCDDAVQLI 198

Query: 256 KRVLD--LWPNDPAIYVLL 272
            ++ +  + PN   I  +L
Sbjct: 199 MQMQEEGICPNSSTIVGVL 217



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 16/174 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + V++ +   + +SWNA+I G+   G G +AL  F ++   G+  D  T 
Sbjct: 318 YSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITF 377

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNR----LVFMYAICGAINDANKVF 120
             ++ +        EG+    L F  +  D ++  +      +V +    G I++A+   
Sbjct: 378 ICLLSSCSHSGLVMEGR----LWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFI 433

Query: 121 SSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT--EIKPDGTTFLVVLS 171
            +M  E D+  W++LL  C  H    + ++L E++ K    + P+ T   V+LS
Sbjct: 434 RNMPFEPDVRIWSALLSACRIH----KNIELGEEVSKKIQSLGPESTGNFVLLS 483


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 172/302 (56%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYS-SVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS+        NV+      RN +S+  +I G+      E+ L  F E+R+ GI+ + FT
Sbjct: 187 YSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFT 246

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +S++ A    +  ++G Q+HA + KI +D + FV + LV MY  CG +  A + F  + 
Sbjct: 247 FSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIG 306

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +   ++WNSL+     HG  ++A+++FE+M    +KP+  TF+ +L+ C HAG +++GL 
Sbjct: 307 DPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLD 366

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YFY M     + P   EHY+ ++ LLGRAG L EA+ FIN M   P    + + L AC++
Sbjct: 367 YFYSMDKTYGVVPGE-EHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRI 425

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HG++E+   +A++++ L P +    VLLSN+      W+D   +R  M +  ++K PGYS
Sbjct: 426 HGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYS 485

Query: 305 WV 306
           WV
Sbjct: 486 WV 487



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 147/277 (53%), Gaps = 8/277 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C +  D   V+  +  ++++SW A+I G+  +G  E+AL  F +M    + ID   +
Sbjct: 86  YSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVL 145

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S +GA G +   K G+ +H+ + K+G++S++FV N L  MY+  G +  A+ VF    E
Sbjct: 146 CSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSE 205

Query: 126 -RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            R++VS+  L+ G        + + +F ++++  I+P+  TF  ++ AC +   +++G Q
Sbjct: 206 CRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQ 265

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            +  +M+ +   +P  +   + +V + G+ G L +A    + +  +P    + +L+S   
Sbjct: 266 LHAQVMKINFDEDPFVS---SILVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSLVSVFG 321

Query: 244 VHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
            HG  + A++  +R++D  + PN      LL+  S A
Sbjct: 322 QHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHA 358



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 76/149 (51%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN +SW A+I+G        +A++ F  MR  G     F  +S + A   +   + GKQM
Sbjct: 4   RNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQM 63

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H L  K G  S +FV + L  MY+ CGA+ DA KVF  M  +D VSW +++ G +  G  
Sbjct: 64  HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEF 123

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            EA+  F++M   E+  D       L AC
Sbjct: 124 EEALLAFKKMIDEEVTIDQHVLCSTLGAC 152


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/291 (36%), Positives = 174/291 (59%), Gaps = 3/291 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  + TR+ + WN+IIAGF   G G  A++ F  M+ AG   +  T+TS++ A   +
Sbjct: 234 RRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGM 293

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G+Q+HA + K  Y+ ++ + N L+ MY  CG++ DA  +F  M +RD++SW++++
Sbjct: 294 VMLEAGRQVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMI 351

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A +G S EA+++F+ M+   + P+  T + VL AC HAG ++ G  YF  M+    +
Sbjct: 352 SGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGI 411

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           +P R EH+  +V LLGRAG L+EA  FI  M+  P   +++ LL AC++H +  +A  +A
Sbjct: 412 QPER-EHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAA 470

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +L L P+D    VLLSN       W DA      M +RG++K+PG SW+
Sbjct: 471 REILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWI 521



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 11/242 (4%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNL-GSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           D   ++  +  RN ++W  ++A   N  G  E+AL+    M + G+  + +T +S++GA 
Sbjct: 133 DALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGAC 192

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           G          +HA   K+G DS+VFV++ L+  Y   G ++   +VF  M  RDLV WN
Sbjct: 193 GTPGVLA---ALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWN 249

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN 191
           S++ G A  G    A++LF +M+      +  T   VL AC     ++ G Q + ++++ 
Sbjct: 250 SIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLKY 309

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
           +  L       + A++ +  + G L +AE+  + M +    S +  ++S    +G    A
Sbjct: 310 ERDLIL-----HNALLDMYCKCGSLEDAEALFHRMPQRDVIS-WSTMISGLAQNGKSAEA 363

Query: 252 VR 253
           +R
Sbjct: 364 LR 365



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 92  GYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH-HGYSREAVQL 150
           G    +FV N LV MYA  G ++DA ++F  M ER++V+W +++   A+  G   EA++ 
Sbjct: 110 GAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRF 169

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
              M +  + P+  TF  VL AC   G +
Sbjct: 170 LVAMWRDGVAPNAYTFSSVLGACGTPGVL 198



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 10/171 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D + ++  +  R+ ISW+ +I+G    G   +AL+ F  M+  G+  +  T+
Sbjct: 323 YCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITM 382

Query: 66  TSIVGAIGVISGFKEG----KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             ++ A       ++G    + M  L    G        N +V +    G +++A +   
Sbjct: 383 VGVLFACSHAGLVEDGWYYFRSMKKL---FGIQPEREHHNCMVDLLGRAGKLDEAVEFIR 439

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            M+ E D V W +LL  C  H     A     ++ K E  PD     V+LS
Sbjct: 440 DMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLE--PDDQGARVLLS 488


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 108/295 (36%), Positives = 179/295 (60%), Gaps = 7/295 (2%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++S++  ++ I+WNA+IAG    G  E+AL  F  +++  +   ++T  +++ A   ++ 
Sbjct: 341 MFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLAD 400

Query: 78  FKEGKQMHALIFKIGY------DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
            + G+Q H+ + K G+      DS+VFV N L+ MY  CG++ +  +VF  M E+D VSW
Sbjct: 401 LQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSW 460

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
           N++++G A +G+  +A+++F +M ++   PD  T + VL AC HAG +D+G  YF  M  
Sbjct: 461 NAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTA 520

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
              L P + +HYT +V LLGRAG+L EA++ I  MS  P   V+ +LL+AC+VH N ++ 
Sbjct: 521 QHGLMPLK-DHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLG 579

Query: 252 VRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
               K++L++ P +   YVLLSN+      W +   +R LM  RG+ K+PG SW+
Sbjct: 580 EYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWI 634



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 109/211 (51%), Gaps = 32/211 (15%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      Q+V+  +  R+++SWN++I  +   G  ++ALK F EM + G++ D  T+
Sbjct: 196 YSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTL 255

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKV----- 119
            S+V A   IS  KEG+Q+HA + K   + +++ + N L+ MYA C  IN+A  +     
Sbjct: 256 ASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMP 315

Query: 120 --------------------------FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                                     FS+M  +D+++WN+L+ GC  +G + EA+ LF  
Sbjct: 316 IRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRL 375

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++  + P   TF  +L+AC +   +  G Q
Sbjct: 376 LKRESVWPTHYTFGNLLNACANLADLQLGRQ 406



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 96/171 (56%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D  +++  +   +Q SWN++I+GF   G  ++AL  F++M   G  ++ ++  S + A  
Sbjct: 103 DAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACA 162

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +   K G Q+H+L+++  Y S+V++ + LV MY+ CG +  A  VF  M  R  VSWNS
Sbjct: 163 GLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNS 222

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           L+     +G   EA+++F +M K  ++PD  T   V+SAC     I +G Q
Sbjct: 223 LITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQ 273



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 4/117 (3%)

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           ++  ++HA I K  + S  F+QNRL+ +Y  CG ++ A K+F  M ER++ SWNS++   
Sbjct: 36  RDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAF 95

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
              G+  +AV +FE+M +     D  ++  ++S     G  D+ L YF  M     L
Sbjct: 96  TKSGFLDDAVHIFEKMPQV----DQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFL 148



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 22/180 (12%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S  +   V+  +  ++ +SWNA+I G+   G G +AL+ F +M ++G   D+
Sbjct: 433 IDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDH 492

Query: 63  FTITSIVGAIGVISGFKEGK-------QMHALI-FKIGYDSNVFVQNRLVFMYAICGAIN 114
            T+  ++ A        EG+         H L+  K  Y   V +  R        G + 
Sbjct: 493 VTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGR-------AGYLE 545

Query: 115 DANKVFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT--EIKPDGTTFLVVLS 171
           +A  +   M  + D + W SLL  C  H      +QL E + K   E+ P+ +   V+LS
Sbjct: 546 EAKNLIEEMSMQPDAIVWGSLLAACKVH----RNIQLGEYVVKKLLEVDPENSGPYVLLS 601


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 179/301 (59%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C+   D   V++S+   + ++W + I G    G  E AL  F EM +  I  ++FT 
Sbjct: 248 YSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTF 307

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+ A   ++  + G+Q+HA+  K+G D N +V   L+ +Y  CG +  A  VF S+ E
Sbjct: 308 SSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTE 367

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VS N+++   A +G+  EA++LFE+M+K   KP+  TF+ +L AC +AG +++G Q 
Sbjct: 368 LDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQI 427

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F L+RN+ S+E  R +HYT ++ LLGRA    EA   I    +NP    ++ LL+AC++H
Sbjct: 428 FSLIRNNHSIELTR-DHYTCMIDLLGRAKRFEEAAMLIEE-GKNPDVIQWRTLLNACKIH 485

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G  E+A +  K++LD  P D   ++LL+N+  +   WD+  ++++   +  ++K P  SW
Sbjct: 486 GEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSW 545

Query: 306 V 306
           V
Sbjct: 546 V 546



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 109/223 (48%), Gaps = 2/223 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     D + V+  V  ++ + + A+I G+   G   +AL+ F +M  + I  + +T+
Sbjct: 147 YAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTL 206

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ + G +     GK +H L+ K G +S V  Q  L+ MY+ C  + D+ KVF+S+  
Sbjct: 207 ASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAY 266

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
              V+W S ++G   +G    A+ +F +M +  I P+  TF  +L AC     ++ G Q 
Sbjct: 267 ASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQI 326

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
             +            +   A++ L G+ G + +A S   S++ 
Sbjct: 327 HAVTVKLGVDGNKYVD--AALIHLYGKCGNVEKARSVFESLTE 367



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 134/262 (51%), Gaps = 6/262 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    + + ++  +  R+ ++WN++I+   + G  ++A++ +  M   G+  D +T 
Sbjct: 45  YIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTF 104

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYD-SNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++I  A   +   +EG++ H L   +G++ S+ FV   +V MYA  G + DA  VF  + 
Sbjct: 105 SAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVL 164

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++D+V + +L++G    G   EA+++FE M  + IKP+  T   VL +C + G +  G +
Sbjct: 165 DKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNG-K 223

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
             + +   + LE   A   T+++ +  +   + ++    NS++     +    ++   Q 
Sbjct: 224 LIHGLVVKSGLESVVASQ-TSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQ- 281

Query: 245 HGNREIAVRSAKRVL--DLWPN 264
           +G  EIA+   + ++   + PN
Sbjct: 282 NGREEIALSMFREMIRCSISPN 303



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           K +H  I K G   + F  ++L+  Y  C  I +A K+F  M  R +V+WNS++      
Sbjct: 21  KSLHTHILKSGSLFSFF-GHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSR 79

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           G ++EA++L++ M    + PD  TF  +  A    G   +G
Sbjct: 80  GKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREG 120


>gi|302143669|emb|CBI22530.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/257 (40%), Positives = 155/257 (60%), Gaps = 1/257 (0%)

Query: 50  FSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI 109
           F+E+   GI I  FT  S++     I    +G+Q+H  + K GY SN  + N L+ MY+ 
Sbjct: 195 FNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSR 254

Query: 110 CGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV 169
           CG I  A +VF+ M++R+++SW S++ G A HG++  A+++F QM +T  KP+  T++ V
Sbjct: 255 CGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHQMLETGTKPNEITYVAV 314

Query: 170 LSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
           LSAC H G I +G ++F  M  +  +  PR EHY  +V LLGR+G L EA  FINSM   
Sbjct: 315 LSACSHVGMISEGQKHFNSMYKEHGI-VPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 373

Query: 230 PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIR 289
               V++ LL AC VHGN E+   +A+ +L+  P+DPA Y+LLSN+  +   W D   IR
Sbjct: 374 ADALVWRTLLGACHVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIR 433

Query: 290 TLMYNRGIRKKPGYSWV 306
             M  R + K+ G SW+
Sbjct: 434 KSMKERNLIKEAGCSWI 450



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 4/171 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC +      V++ +  RN ISW ++I GF   G   +AL+ F +M + G   + 
Sbjct: 249 ISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHQMLETGTKPNE 308

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T  +++ A   +    EG K  +++  + G    +     +V +    G + +A +  +
Sbjct: 309 ITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFIN 368

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           SM    D + W +LL  C  HG +       E + + E  PD     ++LS
Sbjct: 369 SMPLMADALVWRTLLGACHVHGNTELGRHAAEMILEQE--PDDPAAYILLS 417


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 175/302 (57%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    +   ++S +  ++ + W A+I+ +   G  E  LK F EM++A I  D  T 
Sbjct: 445 YAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATY 504

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SIV A   ++    GKQ+H+ I   GY SNVF  + LV MYA CG+I DA ++F  M  
Sbjct: 505 ASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPV 564

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWN+L+   A +G     ++LFE+M ++ ++PD  + L +L AC H G +++GLQY
Sbjct: 565 RNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQY 624

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M     L  P+ EHY + + +L R G  +EAE  +  M   P   ++ ++L++C +H
Sbjct: 625 FDSMTRIYKL-VPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIH 683

Query: 246 GNREIAVRSAKRVLDLWP-NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
            N+E+A ++A ++ ++    D A YV +SN+  A   WD+ G ++  M  RG++K P YS
Sbjct: 684 KNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYS 743

Query: 305 WV 306
           WV
Sbjct: 744 WV 745



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 99/182 (54%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y +  +  + + ++ S+  R  ++W  +I G+       +A   F EM + GID D+
Sbjct: 139 IMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDH 198

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            ++ +++          E +Q+H+ + K+GYDS + V N L+  Y    ++  A ++F+ 
Sbjct: 199 VSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFND 258

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ERD V++N+LL G +  G++REA+ LF +MQ+   +P   TF  +L+A      I+ G
Sbjct: 259 IPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFG 318

Query: 183 LQ 184
            Q
Sbjct: 319 QQ 320



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 114/248 (45%), Gaps = 3/248 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+ D  ++   ++  +   + IS+N ++  +   G  +++L+ F E++  G D   F  
Sbjct: 344 YSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPF 403

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++    +      G+Q+H+        S + V N LV MYA CG   +AN++FS +  
Sbjct: 404 ATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAI 463

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +  V W +++      G   + ++LF +MQ+ +I  D  T+  ++ AC     +  G Q 
Sbjct: 464 QSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQL 523

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              +     +    +   +A+V +  + G + +A      M      S + AL+SA   +
Sbjct: 524 HSHIIGSGYISNVFSG--SALVDMYAKCGSIKDALQMFQEMPVRNSVS-WNALISAYAQN 580

Query: 246 GNREIAVR 253
           G+ +  +R
Sbjct: 581 GDGDCTLR 588



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 93/172 (54%), Gaps = 1/172 (0%)

Query: 13  LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           L FQ +++ +  R+ +++NA++ G+   G   +A+  F +M++ G     FT  +I+ A 
Sbjct: 251 LAFQ-LFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAG 309

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
             +   + G+Q+H  + K  +  NVFV N L+  Y+    + +A+K+F  M E D +S+N
Sbjct: 310 IQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYN 369

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            L+   A +G  +E+++LF+++Q T        F  +LS    +  +D G Q
Sbjct: 370 VLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQ 421



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           N+F  N ++  Y   G +++A  +F SM +R  V+W  L+ G A +   REA  LF +M 
Sbjct: 131 NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMG 190

Query: 156 KTEIKPDGTTFLVVLS 171
           +  I PD  +   +LS
Sbjct: 191 RHGIDPDHVSLATLLS 206



 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 72  IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
           +  ++  K    + A I K G++ N +  N LV  +   G +N A K+F  M  +++ S 
Sbjct: 76  VTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFST 135

Query: 132 NSLLLGCAHHGYSREAVQLFEQM-QKTEI 159
           N++++G    G   EA  LF+ M Q+T +
Sbjct: 136 NTMIMGYIKSGNLSEARTLFDSMFQRTAV 164


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 183/302 (60%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +  D + V+ ++  R+ +SW+A+I  +   G GE+A + F  M++  ++ D  T 
Sbjct: 409 YAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTY 468

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A G +     G +++    K    S++ V N L+ M    G+I  A  +F +M +
Sbjct: 469 INLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQ 528

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+V+WN ++ G + HG +REA+ LF++M K   +P+  TF+ VLSAC  AGF+++G ++
Sbjct: 529 RDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRF 588

Query: 186 F-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           F YL+  D     P  E Y  +V LLGRAG L+EAE  IN M   P  S++  LL+AC++
Sbjct: 589 FSYLL--DGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRI 646

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           +GN ++A R+A+R L   P D A+YV LS++  A   W++   +R +M +RG+RK+ G +
Sbjct: 647 YGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCT 706

Query: 305 WV 306
           W+
Sbjct: 707 WI 708



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 7/298 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y  C S    + V+  ++ R+ +SW  +I G+    + E A   F+ M++ GI  D 
Sbjct: 305 IRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDR 364

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   I+ A    +     +++H+ + + G+ +++ V   LV MYA CGAI DA +VF +
Sbjct: 365 ITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDA 424

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD+VSW++++     +G   EA + F  M++  ++PD  T++ +L+AC H G +D G
Sbjct: 425 MSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLG 484

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           ++ Y   ++ D     P      A++ +  + G +  A     +M +      +  ++  
Sbjct: 485 MEIYTQAIKADLVSHIPVG---NALINMNVKHGSIERARYIFENMVQRD-VVTWNVMIGG 540

Query: 242 CQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
             +HGN   A+    R+L     PN      +LS  S+A    +       L+  RGI
Sbjct: 541 YSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGI 598



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 95/171 (55%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +S C + L+ +  + SV  +  ++WNAIIAG+  LG  ++A   F +M    ++   
Sbjct: 103 IKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSI 162

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   ++ A    +G K GK+ HA + K+G+ S+  +   LV MY   G+++ A +VF  
Sbjct: 163 ITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDG 222

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           + +RD+ ++N ++ G A  G   +A QLF +MQ+   KP+  +FL +L  C
Sbjct: 223 LYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGC 273



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 24/224 (10%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+  ++N +I G+   G GE+A + F  M+Q G   +  +  SI+      
Sbjct: 217 RQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTP 276

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                GK +HA     G   +V V   L+ MY  CG+I  A +VF  M  RD+VSW  ++
Sbjct: 277 EALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMI 336

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-----------HAGFIDKGLQ 184
            G A +    +A  LF  MQ+  I+PD  T++ +++AC            H+  +  G  
Sbjct: 337 RGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFG 396

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
              L+              TA+V +  + G + +A    ++MSR
Sbjct: 397 TDLLVD-------------TALVHMYAKCGAIKDARQVFDAMSR 427



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 62/105 (59%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GKQ+   I + G   N++  N L+ +++ICG + +A + F S++ + +V+WN+++ G A 
Sbjct: 80  GKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQ 139

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            G+ +EA  LF QM    ++P   TFL+VL AC     +  G ++
Sbjct: 140 LGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEF 184


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 108/291 (37%), Positives = 171/291 (58%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+     +N +SWNA+I G+ + G   + L  F +M+ AG+  D  T+ S++ A   +
Sbjct: 225 RRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHV 284

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               +G+ +HA I K G   + FV   LV MY+ CG+I  A +VF+S   +D+ +WNS++
Sbjct: 285 GALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSII 344

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G + HG  + A+Q+F +M     KP+  TF+ VLSAC  AG +D+G + F LM +   +
Sbjct: 345 SGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGI 404

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           + P  EHY  +V LLGR G L EAE  +  M +     V+++LL AC+ HGN E+A R A
Sbjct: 405 Q-PTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVA 463

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++L+L P + + +V LSN+  +   W D  ++R  M  +G+RK PG S +
Sbjct: 464 QKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMI 514



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 9/168 (5%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
            +++S +   N   WN II  + N  + E AL  F +M  A +  D +T T  + + G  
Sbjct: 62  HSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSF 121

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           SG +EG+Q+H  + K G   ++F+QN L+ +YA CG I DA  +   M ERD+VSWN+LL
Sbjct: 122 SGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALL 181

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
              A  G    A  LF++M  TE   +   F++       +G++  GL
Sbjct: 182 SAYAERGLMELACHLFDEM--TERNVESWNFMI-------SGYVGVGL 220



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 131/295 (44%), Gaps = 47/295 (15%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+ C    D +++   +  R+ +SWNA+++ +   G  E A   F EM +  ++   
Sbjct: 150 IHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWN 209

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F I+  VG                                        G + +A +VF  
Sbjct: 210 FMISGYVGV---------------------------------------GLLEEARRVFGE 230

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              +++VSWN+++ G +H G   E + LFE MQ   +KPD  T + VLSAC H G + +G
Sbjct: 231 TPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQG 290

Query: 183 -LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
              + Y+ +N  S++   A   TA+V +  + G + +A    NS  R    S + +++S 
Sbjct: 291 EWVHAYIDKNGISIDGFVA---TALVDMYSKCGSIEKALEVFNSCLRK-DISTWNSIISG 346

Query: 242 CQVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294
              HG+ + A++  S   V    PN+     +LS  S+A    D+  ++  LM +
Sbjct: 347 LSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRA-GLLDEGREMFNLMVH 400



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S      V++S   ++  +WN+II+G    GSG+ AL+ FSEM   G   +  T 
Sbjct: 316 YSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTF 375

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A        EG++M  L+  + G    +     +V +    G + +A ++   M 
Sbjct: 376 VCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMP 435

Query: 125 ERDL-VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           +++  V W SLL  C +HG    A ++ +++   E+ P  ++  V LS
Sbjct: 436 QKEASVVWESLLGACRNHGNVELAERVAQKL--LELSPQESSSFVQLS 481



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI---CGAINDANKV 119
           F    I+    + +   E  Q HA I K G   + F  +RL+   +      AI  A+ +
Sbjct: 5   FPPPPILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSI 64

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           FS +   +   WN+++   A+      A+ +F QM    + PD  TF   L +C     +
Sbjct: 65  FSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGV 124

Query: 180 DKGLQ 184
           ++G Q
Sbjct: 125 EEGRQ 129


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 171/297 (57%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + V+  +  ++ +SW +II+G       ++AL+ F +M+ +GI+ D   +
Sbjct: 177 YVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIIL 236

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A   +     G+ +H  I +     ++ +   +V MYA CG I  + ++F+ M  
Sbjct: 237 TSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPH 296

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++++WN+LL G A HG++ + ++LFE+M +  ++P+  TFL +L+ACCH G +++G QY
Sbjct: 297 KNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQY 356

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+      PPR EHY  +V LL RA  L+EA     +M  +P   +  ALLSAC+ +
Sbjct: 357 FNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKEN 416

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           GN E+      R ++L  +D  +YVLLSN+      WDD   IR LM  +GI+K PG
Sbjct: 417 GNTELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPG 473



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 128/260 (49%), Gaps = 19/260 (7%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C    D   V+  +  R+ +SW  +I+G+   G  ++A+  F  M    ++ +  T 
Sbjct: 79  YSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRM---DVEPNAATF 135

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A G       GK +H L FK  +   + V N L+ MY  CG +  A +VF  + E
Sbjct: 136 VSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAE 195

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           +D+VSW S++ G       +EA++LF+ MQ + I+PDG     VLSAC   G +D G   
Sbjct: 196 KDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWV 255

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALLSAC 242
           + ++ R     +    +  TA+V +  + G +  +    N M   P  +V  + ALL+  
Sbjct: 256 HEHIDRKAIKWD---IQIGTAMVDMYAKCGCIEMSMQIFNGM---PHKNVLTWNALLNGL 309

Query: 243 QVHGNREIAVRSAKRVLDLW 262
            +HG+       A +VL+L+
Sbjct: 310 AMHGH-------AYKVLELF 322



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 86/153 (56%), Gaps = 3/153 (1%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           +NA+++G+      + A   +  + + G   D FT  +++ +     G  EG+Q+H +I 
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
           K+G+  N++V+N LV  Y++C    DA++VF  M  RD+VSW  ++ G    G   EAV 
Sbjct: 62  KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           LF +M   +++P+  TF+ VL AC   G++  G
Sbjct: 122 LFLRM---DVEPNAATFVSVLVACGRKGYLSVG 151


>gi|297597140|ref|NP_001043491.2| Os01g0600400 [Oryza sativa Japonica Group]
 gi|53791399|dbj|BAD53436.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|53793537|dbj|BAD52986.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222618803|gb|EEE54935.1| hypothetical protein OsJ_02490 [Oryza sativa Japonica Group]
 gi|255673429|dbj|BAF05405.2| Os01g0600400 [Oryza sativa Japonica Group]
          Length = 348

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 104/289 (35%), Positives = 173/289 (59%), Gaps = 2/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  ++ R+  SW  +++ +     GE+A++CF  M +     +  T+ + +     ++ 
Sbjct: 44  VFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLAC 103

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G Q+H+   K G++S+V V + LV MY  CG + DA  +F   D  DLV WN+++ G
Sbjct: 104 LGSGLQLHSYTIKSGWNSSV-VSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICG 162

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG+  +A++ F++M      PD  TF+ VLSAC HAG +D+G +YF L+ +   +  
Sbjct: 163 YAQHGHGYKALEAFQEMIDEGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGI-T 221

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P  EHY  +V +L +AG L EAES IN M   P  S++K +L AC++HGN EIA R+A++
Sbjct: 222 PTLEHYACMVDILAKAGKLAEAESLINEMPLTPDASLWKTILGACRMHGNIEIAERAAEK 281

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +  P+D +  +LLSN+      W+D   +R+++ +RG++K+PG SW+
Sbjct: 282 LFESQPDDISSCILLSNIYADLKRWNDVAKLRSMLVDRGVKKEPGCSWI 330



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 48/104 (46%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G Q+HA + K G+  +  V   L+ MY   G   +A  VF  + ERD+ SW  ++   A 
Sbjct: 6   GCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAK 65

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
                +A++ F  M +   +P+  T    LS C     +  GLQ
Sbjct: 66  TDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQ 109



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 12/172 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +  D + ++    T + + WN II G+   G G +AL+ F EM   G   D  T 
Sbjct: 132 YVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITF 191

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A        EG++   L+  + G    +     +V + A  G + +A  + + M 
Sbjct: 192 VGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEMP 251

Query: 125 -ERDLVSWNSLLLGCAHHG----YSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
              D   W ++L  C  HG      R A +LFE       +PD  +  ++LS
Sbjct: 252 LTPDASLWKTILGACRMHGNIEIAERAAEKLFES------QPDDISSCILLS 297


>gi|297744558|emb|CBI37820.3| unnamed protein product [Vitis vinifera]
          Length = 504

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 107/290 (36%), Positives = 179/290 (61%), Gaps = 3/290 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++++  +N +SWN++IAG+ N G  + A + + +M   G   D  T++S++      + 
Sbjct: 211 LFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAA 270

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD-ERDLVSWNSLLL 136
              G Q+H  I K     ++ + N L+ MY+ CGAI +A  +F  +  +++++SWN+++ 
Sbjct: 271 LHLGMQIHQQITKTVI-PDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIG 329

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A HG++ +A++LFE M++ +++P   TF+ VL+AC HAGF+ +G  +F  M  +  +E
Sbjct: 330 GYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIE 389

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
           P R EH+ ++V ++GR G L EA   INSM   P  +V+ ALL AC+VH N E+A  +A+
Sbjct: 390 P-RIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAE 448

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            ++ L P   A YVLL N+      WD+A ++R +M    IRK+PGYSWV
Sbjct: 449 ALMKLEPESSAPYVLLHNMYADVGQWDNATEMRMMMERNNIRKQPGYSWV 498



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 99/244 (40%), Gaps = 42/244 (17%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y +       + ++  ++ R+ ISWN +I+G+  +   E+A   F EM       D 
Sbjct: 134 IMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNP----DT 189

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S+      ISGF +                              G +  A  +F++
Sbjct: 190 LTWNSM------ISGFAQK-----------------------------GNLELARALFAT 214

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + +++LVSWNS++ G  ++G  + A +L+ QM     KPD  T   VLS C     +  G
Sbjct: 215 IPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLG 274

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           +Q    +      + P      +++ +  R G + EA +  + +        + A++   
Sbjct: 275 MQIHQQITKTVIPDIPIN---NSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGY 331

Query: 243 QVHG 246
             HG
Sbjct: 332 AFHG 335



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 58/210 (27%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ S++ RN +SWNA++ GF   G  E+A++ F  M +     D  +++++V  +     
Sbjct: 7   LFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPER----DSASLSALVAGLIQNGE 62

Query: 78  FKEGKQM---------------HAL-IFKIGY---------------------------- 93
             E K++               HA  I   GY                            
Sbjct: 63  LDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGR 122

Query: 94  -DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
            + NV   N ++  Y     I  A  +F  M ERD +SWN+++ G        EA  LF+
Sbjct: 123 FERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQ 182

Query: 153 QMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +M      PD  T+  ++S     GF  KG
Sbjct: 183 EMP----NPDTLTWNSMIS-----GFAQKG 203



 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/114 (20%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           +++A ++F SM ER++VSWN+++ G   +G    A++ F +M +     D  +   +++ 
Sbjct: 1   MDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPER----DSASLSALVAG 56

Query: 173 CCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
               G +D+  +     R     +      Y  ++   G+ G +++A    + +
Sbjct: 57  LIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQI 110


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 181/304 (59%), Gaps = 2/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC +    + ++  V+T++ ++W+A+I+ + +LG  + AL  + +M   G+  + 
Sbjct: 462 ISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNS 521

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ +   ++  + G+ +H+ +  +G + ++ +   LV MY  CG +  A K+F S
Sbjct: 522 ATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDS 581

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ERD+V+WN ++ G   HG + +A++LF  M++  +KP+  TFL +LSACCHAG +DKG
Sbjct: 582 MLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKG 641

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + F  M  + SLE P  +HY  +V LLG++G L EAE  +++M   P   ++  LL AC
Sbjct: 642 RELFTRME-EYSLE-PNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGAC 699

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N E+ +R AK+     P +   Y+L+SN   + + W++   +R +M N G+ K  G
Sbjct: 700 KMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIG 759

Query: 303 YSWV 306
           +S +
Sbjct: 760 WSTI 763



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 141/277 (50%), Gaps = 10/277 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++CDS+ D + ++  +  ++ +SW ++I  +C  G  E+A++ F  M ++G+  D   I
Sbjct: 260 YTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVI 319

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + ++  +G  +  + GK  HA I +  +  +V + N L+ MYA C  ++ A  VF  + +
Sbjct: 320 SCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQ 379

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQ---KTEIKPDGTTFLVVLSACCHAGFIDKG 182
           RD  SW+S+++     G   + ++L+ +MQ   K E + D  + + ++S+C   G +  G
Sbjct: 380 RDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLG 439

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
              + Y +++ A      A    A++ + GR G  + A   I  M +      + AL+S+
Sbjct: 440 QSAHCYSIKHLAGENSSVA---NALISMYGRCGNFDVARK-IFGMVKTKDVVTWSALISS 495

Query: 242 CQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVS 276
               G+ + A+    ++L   + PN   +  ++S+ +
Sbjct: 496 YSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCA 532



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 132/281 (46%), Gaps = 8/281 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR---QAGID 59
           I  Y++C        V+  +  R+  SW++++  +C  G   + L+ + EM+   +   +
Sbjct: 358 ISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFE 417

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            D  ++ SI+ +   +   + G+  H    K     N  V N L+ MY  CG  + A K+
Sbjct: 418 YDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKI 477

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  +  +D+V+W++L+   +H G+S++A+ L++QM    +KP+  T + V+S+C +   +
Sbjct: 478 FGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAAL 537

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           + G +  +    D  LE   +   TA+V +  + G L  A    +SM        +  ++
Sbjct: 538 EHG-ELIHSHVKDVGLECDLSI-CTALVDMYMKCGQLGIARKMFDSMLERD-VVTWNVMI 594

Query: 240 SACQVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKA 278
           S   +HG    A++  S     ++ PN      +LS    A
Sbjct: 595 SGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHA 635



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 4/174 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAG-FCNLGSGEQALKCFSEMRQAG---I 58
           +  Y+RC S  D   ++  +  R+ ++W A+I+G  CN   GE        +R AG    
Sbjct: 152 VYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGA 211

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
             +  T+ S + A GV+     G  +H    K G      V + L  MY  C +  DA  
Sbjct: 212 RPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARI 271

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           +F  + E+DLVSW SL+      G++ +AV+LF  M+++ ++PD      +L+ 
Sbjct: 272 LFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAG 325



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 7/160 (4%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN+++            L     MR +G     FT   +  A   +     G  +HA   
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 90  KIGY---DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSRE 146
           + G    D +V V + LV+MYA CG++ DA ++F  M ERD+V+W +++ GC  +G   E
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 147 AVQLFEQMQKTE----IKPDGTTFLVVLSACCHAGFIDKG 182
            +    +M ++      +P+  T    L AC   G +  G
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVG 234


>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial [Vitis vinifera]
          Length = 681

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 107/290 (36%), Positives = 179/290 (61%), Gaps = 3/290 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++++  +N +SWN++IAG+ N G  + A + + +M   G   D  T++S++      + 
Sbjct: 388 LFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAA 447

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD-ERDLVSWNSLLL 136
              G Q+H  I K     ++ + N L+ MY+ CGAI +A  +F  +  +++++SWN+++ 
Sbjct: 448 LHLGMQIHQQITKTVI-PDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIG 506

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A HG++ +A++LFE M++ +++P   TF+ VL+AC HAGF+ +G  +F  M  +  +E
Sbjct: 507 GYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIE 566

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
           P R EH+ ++V ++GR G L EA   INSM   P  +V+ ALL AC+VH N E+A  +A+
Sbjct: 567 P-RIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAE 625

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            ++ L P   A YVLL N+      WD+A ++R +M    IRK+PGYSWV
Sbjct: 626 ALMKLEPESSAPYVLLHNMYADVGQWDNATEMRMMMERNNIRKQPGYSWV 675



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 99/244 (40%), Gaps = 42/244 (17%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y +       + ++  ++ R+ ISWN +I+G+  +   E+A   F EM       D 
Sbjct: 311 IMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNP----DT 366

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S+      ISGF +                              G +  A  +F++
Sbjct: 367 LTWNSM------ISGFAQK-----------------------------GNLELARALFAT 391

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + +++LVSWNS++ G  ++G  + A +L+ QM     KPD  T   VLS C     +  G
Sbjct: 392 IPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLG 451

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           +Q    +      + P      +++ +  R G + EA +  + +        + A++   
Sbjct: 452 MQIHQQITKTVIPDIPIN---NSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGY 508

Query: 243 QVHG 246
             HG
Sbjct: 509 AFHG 512



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 93/209 (44%), Gaps = 10/209 (4%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ ++  RN ++WN++I G+       +A K F EM    +      I+  V   G    
Sbjct: 89  LFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCQG--RW 146

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            +EG+     +F    + +    N ++  Y   G +++A ++F SM ER++VSWN+++ G
Sbjct: 147 VEEGRH----LFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTG 202

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
              +G    A++ F +M +     D  +   +++     G +D+  +     R     + 
Sbjct: 203 FLQNGDVERAIEFFMRMPER----DSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKG 258

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSM 226
                Y  ++   G+ G +++A    + +
Sbjct: 259 DLVHAYNILLAGYGQNGRVDKARQLFDQI 287



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 58/222 (26%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+R     +   ++ S++ RN +SWNA++ GF   G  E+A++ F  M +     D  ++
Sbjct: 172 YTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPER----DSASL 227

Query: 66  TSIVGAIGVISGFKEGKQM---------------HAL-IFKIGY---------------- 93
           +++V  +       E K++               HA  I   GY                
Sbjct: 228 SALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQI 287

Query: 94  -------------DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
                        + NV   N ++  Y     I  A  +F  M ERD +SWN+++ G   
Sbjct: 288 PFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVR 347

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
                EA  LF++M      PD  T+  ++S     GF  KG
Sbjct: 348 MSDMEEAWMLFQEMP----NPDTLTWNSMIS-----GFAQKG 380



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 74/158 (46%), Gaps = 11/158 (6%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           +++  N+ +      G IN+A  +F +M +R++V+WNS++ G        +A +LF++M 
Sbjct: 66  DLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMP 125

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR-AEHYTAIVGLLGRAG 214
             ++       ++     C   ++++G   F  M       P R    +  ++    R+G
Sbjct: 126 DRDVV--SWNLMISGYVSCQGRWVEEGRHLFDEM-------PERDCVSWNTMISGYTRSG 176

Query: 215 FLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            ++EA    +SM      S + A+++    +G+ E A+
Sbjct: 177 RMDEALQLFDSMQERNVVS-WNAMVTGFLQNGDVERAI 213



 Score = 40.4 bits (93), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 72/147 (48%), Gaps = 18/147 (12%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++++  +  R+ +SWN +I+G+   G  ++AL+ F  M++           ++V    ++
Sbjct: 151 RHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQE----------RNVVSWNAMV 200

Query: 76  SGFKEGKQMHALI--FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-----DERDL 128
           +GF +   +   I  F    + +    + LV      G +++A ++  +      D+ DL
Sbjct: 201 TGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDL 260

Query: 129 V-SWNSLLLGCAHHGYSREAVQLFEQM 154
           V ++N LL G   +G   +A QLF+Q+
Sbjct: 261 VHAYNILLAGYGQNGRVDKARQLFDQI 287


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 106/292 (36%), Positives = 176/292 (60%), Gaps = 2/292 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++ S+R R+ ++W A+I G+   G  + A++ F  M + G   + +T+ +++     +
Sbjct: 366 RRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSL 425

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD-ERDLVSWNSL 134
           +    G+Q+HA   + G  S+V V N L+ MYA  G+INDA  VF+ +  +RD ++W S+
Sbjct: 426 ASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSM 485

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           ++  A HG   EA+ LFE+M +  IKPD  T++ VLSAC H G +++G  Y+ LM+N   
Sbjct: 486 IIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHK 545

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           +  P   HY  ++ L GRAG L EA +FI +M   P    + +LL++C+VH N E+A  +
Sbjct: 546 I-IPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVA 604

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           A+R+L + P +   Y  L+NV  A   W++A +IR  M ++G++K  G+SWV
Sbjct: 605 AERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWV 656



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 125/289 (43%), Gaps = 41/289 (14%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     +   V+  +   + +SW A+I G+  +G  E A+  F EM    +    FT+
Sbjct: 89  YAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTL 148

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD- 124
           T+++ +   +     G+++H+ + K G  S + V N L+ MYA  G    A  VF  M  
Sbjct: 149 TNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKL 208

Query: 125 ------------------------------ERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
                                         ERD+VSWN+++ G   HG+ REA+ +F +M
Sbjct: 209 KSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKM 268

Query: 155 -QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGR 212
              +  KPD  T    LSAC +   +  G Q + +++R +            A++ +  +
Sbjct: 269 LMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVG---NALISMYSK 325

Query: 213 AGFLNEAESFI-NSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260
           +G +  A+  I  SM  N     + ALL      G+    +  A+R+ D
Sbjct: 326 SGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGD----INPARRIFD 370



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 125/279 (44%), Gaps = 36/279 (12%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGV 74
           Q  +  +  R+ +SWNA+I+G+   G   +AL  FS+M   +    D FT+ S + A   
Sbjct: 231 QVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACAN 290

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA---------------------- 112
           +   K GKQ+HA I +  +D+   V N L+ MY+  G                       
Sbjct: 291 LENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFT 350

Query: 113 -----------INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
                      IN A ++F S+  RD+V+W ++++G   +G++++A++LF  M K   KP
Sbjct: 351 ALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKP 410

Query: 162 DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES 221
           +  T   +LS       +D G Q         +       +  A++ +  ++G +N+A  
Sbjct: 411 NNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSN--ALITMYAKSGSINDARW 468

Query: 222 FINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260
             N +        + +++ A   HG  E A+   +R+L+
Sbjct: 469 VFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLE 507



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 6/118 (5%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK +HA I K G    VF+ N L+  YA  G I DA++VF  M  + + SWN +L G A 
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP 198
            G   EA ++FE+M     +PD  ++  ++      G  +  +  F  M +D    PP
Sbjct: 92  GGRLEEAHRVFEEMP----EPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDV--PP 143


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 106/280 (37%), Positives = 161/280 (57%), Gaps = 2/280 (0%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SWN+II+G+      E A   F+ M + GI  D FT  +++     ++    GKQ+HA 
Sbjct: 527 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 586

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           + K    S+V++ + LV MY+ CG ++D+  +F     RD V+WN+++ G AHHG   EA
Sbjct: 587 VIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEA 646

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           +QLFE+M    IKP+  TF+ +L AC H G IDKGL+YFY+M+ D  L+ P+  HY+ +V
Sbjct: 647 IQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLD-PQLPHYSNMV 705

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR-EIAVRSAKRVLDLWPNDP 266
            +LG++G +  A   I  M       +++ LL  C +H N  E+A  +   +L L P D 
Sbjct: 706 DILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDS 765

Query: 267 AIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + Y LLSNV      W+   D+R  M    ++K+PG SWV
Sbjct: 766 SAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWV 805



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 89/168 (52%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++CD+  D Q ++      N+ S+NA+I G+     G +AL  F  +  +G+  D  ++
Sbjct: 284 YAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISL 343

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + +  A  ++ G  EG Q++ L  K     +V V N  + MY  C A+ +A +VF  M  
Sbjct: 344 SGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR 403

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           RD VSWN+++     +G   E + LF  M ++ I+PD  TF  VL AC
Sbjct: 404 RDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKAC 451



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 135/297 (45%), Gaps = 52/297 (17%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C +  +   V+  +R R+ +SWNAIIA     G G + L  F  M ++ I+ D 
Sbjct: 382 IDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDE 441

Query: 63  FTITSIVGA-IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           FT  S++ A  G   G+  G ++H+ I K G  SN  V   L+ MY+ CG I +A K+ S
Sbjct: 442 FTFGSVLKACTGGSLGY--GMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHS 499

Query: 122 ----------SMDERD----------LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
                     +M+E +           VSWNS++ G      S +A  LF +M +  I P
Sbjct: 500 RFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITP 559

Query: 162 DGTTFLVVLSACC-----------HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLL 210
           D  T+  VL  C            HA  I K LQ      +D  +        + +V + 
Sbjct: 560 DKFTYATVLDTCANLASAGLGKQIHAQVIKKELQ------SDVYIS-------STLVDMY 606

Query: 211 GRAGFLNEAE-SFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL--DLWPN 264
            + G L+++   F  S+ R+     + A++     HG  E A++  +R++  ++ PN
Sbjct: 607 SKCGDLHDSRLMFEKSLRRD--FVTWNAMICGYAHHGKGEEAIQLFERMILENIKPN 661



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 91/168 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++ ++ +     ++ +  R+ +SWN++++G+   G   ++++ F +M +AG + D  T 
Sbjct: 82  YAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTF 141

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             I+     +     G Q+H ++ ++G D++V   + L+ MYA      ++ +VF  + E
Sbjct: 142 AIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPE 201

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           ++ VSW++++ GC  +     A++ F++MQK       + +  VL +C
Sbjct: 202 KNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSC 249



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 116/243 (47%), Gaps = 5/243 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++    ++   V+  +  +N +SW+AIIAG         ALK F EM++    +     
Sbjct: 183 YAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIY 242

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   +S  + G Q+HA   K  + ++  V+   + MYA C  + DA  +F   + 
Sbjct: 243 ASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSEN 302

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            +  S+N+++ G +   +  +A+ LF ++  + +  D  +   V  AC     + +GLQ 
Sbjct: 303 LNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQI 362

Query: 186 FYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + L +++  SL+   A    A + + G+   L EA    + M R    S + A+++A + 
Sbjct: 363 YDLAIKSSLSLDVCVA---NAAIDMYGKCQALAEAFRVFDEMRRRDAVS-WNAIIAAHEQ 418

Query: 245 HGN 247
           +G 
Sbjct: 419 NGK 421



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 5/159 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D + ++     R+ ++WNA+I G+ + G GE+A++ F  M    I  ++ T 
Sbjct: 606 YSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTF 665

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            SI+ A   +    +G +   ++ +  G D  +   + +V +    G +  A ++   M 
Sbjct: 666 ISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMP 725

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
            E D V W +LL  C  H   R  V++ E+     ++ D
Sbjct: 726 FEADDVIWRTLLGVCTIH---RNNVEVAEEATAALLRLD 761



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 45/78 (57%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           +V   N+++  YA    +  A+  F+ M  RD+VSWNS+L G   +G + +++++F  M 
Sbjct: 71  DVVSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMG 130

Query: 156 KTEIKPDGTTFLVVLSAC 173
           +   + DG TF ++L  C
Sbjct: 131 RAGTEFDGRTFAIILKVC 148


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/291 (37%), Positives = 173/291 (59%), Gaps = 2/291 (0%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFTITSIVGAIG 73
           F+ V+  +  RN  SWN +I G+   G   + L+ F  M   G  I + FT+ +++ A  
Sbjct: 257 FEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACS 316

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +     GK +H     IGY  N+FV N L+ MYA CG I +A  VF+ +D +D++SWN+
Sbjct: 317 RLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNT 376

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G A HG++ +A+ +F++M+    +PDG TF+ +LSAC H G +  G  YF  M +  
Sbjct: 377 IINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHY 436

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           S+  P+ EHY  +V LLGRAG L++A +FI  M   P   ++ ALL AC+++ N EIA  
Sbjct: 437 SI-VPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAEL 495

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           + +R+++L PN+PA +V++SN+ K     +D   ++  M + G RK PG S
Sbjct: 496 ALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCS 546



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 68/135 (50%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I T SR       + ++  +   N  +WNA+  G+   G     +  F E+ +     + 
Sbjct: 51  ITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNC 110

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT   I+ + G + G +EG+++H    K G+ SN FV   L+ MY+  G + DA KVF  
Sbjct: 111 FTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGE 170

Query: 123 MDERDLVSWNSLLLG 137
           M ER++V W +++ G
Sbjct: 171 MHERNVVVWTAIING 185



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/227 (19%), Positives = 101/227 (44%), Gaps = 19/227 (8%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           ++   Q+ A I   G + N FV    +   +    I+ A K+F  + + +  +WN++  G
Sbjct: 25  YERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRG 84

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
              +G+ R+ V LF ++ +    P+  TF +++ +C     + +G +    +   A+   
Sbjct: 85  YLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEE----VHCCATKHG 140

Query: 198 PRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
            ++  +  T+++ +  + G + +A      M       V+ A+++   + G+    V S 
Sbjct: 141 FKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHER-NVVVWTAIINGYILCGD----VVSG 195

Query: 256 KRVLDLWPNDPAI--------YVLLSNVSKATDCWDDAGDIRTLMYN 294
           +R+ DL P    +        Y+   N++ A + +D   +  T+ +N
Sbjct: 196 RRLFDLAPERDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWN 242



 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 12/172 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    +   V++ +  ++ ISWN II G    G    AL  F  M+  G + D  T 
Sbjct: 350 YAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTF 409

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR-----LVFMYAICGAINDANKVF 120
             I+ A   +   K+G     L FK   D    V        +V +    G ++ A    
Sbjct: 410 VGILSACTHMGLVKDG----FLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFI 465

Query: 121 SSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             M  E D V W +LL  C    Y    +      +  E++P+     V++S
Sbjct: 466 RKMPIEPDAVIWAALLGAC--RLYKNVEIAELALQRLIELEPNNPANFVMVS 515


>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 115/285 (40%), Positives = 169/285 (59%), Gaps = 9/285 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVR--TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           I  Y++C +  D  +V+ ++R   R+ +SW AII+ +   G GE AL  F +M   GI  
Sbjct: 335 ISMYAKCGNVEDGSHVFRTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKP 394

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           +  T+TS++ A G +   K G+Q HALIFK+G+D+ +FV N L+ MY  CG   D   VF
Sbjct: 395 NQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVF 453

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M E DL++WN++L+GCA +G  +EA+++FEQM+   I PD  +FL VL AC HAG +D
Sbjct: 454 EEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVD 513

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +G  +F  M     +  P   HYT +V LLGRAG+L+EAE+ I +M   P   +++ALL 
Sbjct: 514 EGWAHFNSMTQKYGI-MPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLG 572

Query: 241 ACQVHGNREIAVRSAKRVLDL----WPNDPAIYVLLSNVSKATDC 281
           AC++H N E+   S K  +       PN   I + + N+    DC
Sbjct: 573 ACRIHRNNELLYHSEKLAVVFGILSTPNGSPIQI-IKNLRICGDC 616



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 3/190 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I  +++C    D   +Y  V  + N  SW A+IAGF       +AL+   E+ ++G    
Sbjct: 233 IAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQNEESREALELLIELHRSGSVPS 292

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             + TS + A   I   + G+ +H+L  K G   N +V N L+ MYA CG + D + VF 
Sbjct: 293 DSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFR 352

Query: 122 S--MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           +  M +RD+VSW +++      G+   A+ LF  M    IKP+  T   +LSAC + G I
Sbjct: 353 TIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAI 412

Query: 180 DKGLQYFYLM 189
             G Q+  L+
Sbjct: 413 KLGEQFHALI 422



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 99/244 (40%), Gaps = 60/244 (24%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+ S+  RN +SWNA+I+G+   G  + A K F EM +                    
Sbjct: 121 REVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPE-------------------- 160

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                               NV   N +V  Y  C  +++A ++F  M ER+ VSW  ++
Sbjct: 161 -------------------KNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMI 201

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G  H     EA  +F +M +T  +   TT +   + C   G +D  +Q +     +   
Sbjct: 202 SGYVHISDYWEAWDVFVKMCRTRNEYSWTTMIAAFAQC---GRLDDAIQLY-----ERVP 253

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAES-----FINSMSRN---PGPSVYKALLSACQVHGN 247
           E   +  + A++     AGF+   ES      +  + R+   P  S + + LSAC   G+
Sbjct: 254 EQTNSASWAAMI-----AGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGD 308

Query: 248 REIA 251
            EI 
Sbjct: 309 VEIG 312



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 18/168 (10%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE-GKQMHA-LI 88
           N  I     LG  E+A + F+EM Q            +V    +I+G+ + GK   A L+
Sbjct: 43  NTRIQELGRLGRVEEARRVFNEMIQ----------RDVVSWNSMINGYSQNGKVDEARLL 92

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
           F      N+     L+  YA  G I +A +VF SM ER++VSWN+++ G   +G  + A 
Sbjct: 93  FDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNAR 152

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDAS 194
           +LF++M +  +     ++  V++  CH   + +  + F  M  RN  S
Sbjct: 153 KLFDEMPEKNV----ASWNSVVTGYCHCYRMSEARELFDQMPERNSVS 196


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 172/302 (56%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYS-SVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS+        NV+      RN +S+  +I G+      E+ L  F E+R+ GI+ + FT
Sbjct: 252 YSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFT 311

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +S++ A    +  ++G Q+HA + KI +D + FV + LV MY  CG +  A + F  + 
Sbjct: 312 FSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIG 371

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +   ++WNSL+     HG  ++A+++FE+M    +KP+  TF+ +L+ C HAG +++GL 
Sbjct: 372 DPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLD 431

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YFY M     + P   EHY+ ++ LLGRAG L EA+ FIN M   P    + + L AC++
Sbjct: 432 YFYSMDKTYGVVPGE-EHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRI 490

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HG++E+   +A++++ L P +    VLLSN+      W+D   +R  M +  ++K PGYS
Sbjct: 491 HGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYS 550

Query: 305 WV 306
           WV
Sbjct: 551 WV 552



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 147/277 (53%), Gaps = 8/277 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C +  D   V+  +  ++++SW A+I G+  +G  E+AL  F +M    + ID   +
Sbjct: 151 YSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVL 210

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S +GA G +   K G+ +H+ + K+G++S++FV N L  MY+  G +  A+ VF    E
Sbjct: 211 CSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSE 270

Query: 126 -RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            R++VS+  L+ G        + + +F ++++  I+P+  TF  ++ AC +   +++G Q
Sbjct: 271 CRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQ 330

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            +  +M+ +   +P  +   + +V + G+ G L +A    + +  +P    + +L+S   
Sbjct: 331 LHAQVMKINFDEDPFVS---SILVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSLVSVFG 386

Query: 244 VHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
            HG  + A++  +R++D  + PN      LL+  S A
Sbjct: 387 QHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHA 423



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        ++ ++  RN +SW A+I+G        +A++ F  MR  G     F  
Sbjct: 50  YSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAF 109

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S + A   +   + GKQMH L  K G  S +FV + L  MY+ CGA+ DA KVF  M  
Sbjct: 110 SSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPC 169

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +D VSW +++ G +  G   EA+  F++M   E+  D       L AC
Sbjct: 170 KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGAC 217



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + GKQ+HAL+   GY    F+ N LV MY+ CG ++ A K+F +M +R+LVSW +++ G
Sbjct: 21  LRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISG 80

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL 188
            + +    EA++ F  M+     P    F   + AC   G I+ G Q   L
Sbjct: 81  LSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCL 131


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 181/304 (59%), Gaps = 2/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC +    + ++  V+T++ ++W+A+I+ + +LG  + AL  + +M   G+  + 
Sbjct: 462 ISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNS 521

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ +   ++  + G+ +H+ +  +G + ++ +   LV MY  CG +  A K+F S
Sbjct: 522 ATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDS 581

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ERD+V+WN ++ G   HG + +A++LF  M++  +KP+  TFL +LSACCHAG +DKG
Sbjct: 582 MLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKG 641

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + F  M  + SLE P  +HY  +V LLG++G L EAE  +++M   P   ++  LL AC
Sbjct: 642 RELFTRM-EEYSLE-PNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGAC 699

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N E+ +R AK+     P +   Y+L+SN   + + W++   +R +M N G+ K  G
Sbjct: 700 KMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIG 759

Query: 303 YSWV 306
           +S +
Sbjct: 760 WSTI 763



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 85/150 (56%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++CDS+ D + ++  +  ++ +SW ++I  +C  G  E+A++ F  M ++G+  D   I
Sbjct: 260 YTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVI 319

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + ++  +G  +  + GK  HA I +  +  +V + N L+ MYA C  ++ A  VF  + +
Sbjct: 320 SCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQ 379

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           RD  SW+S+++     G   + ++L+ +MQ
Sbjct: 380 RDTDSWSSMVVAYCKAGLDLKCLELYREMQ 409



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 5/227 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR---QAGID 59
           I  Y++C        V+  +  R+  SW++++  +C  G   + L+ + EM+   +   +
Sbjct: 358 ISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFE 417

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            D  ++ SI+ +   +   + G+  H    K     N  V N L+ MY  CG  + A K+
Sbjct: 418 YDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKI 477

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  +  +D+V+W++L+   +H G+S++A+ L++QM    +KP+  T + V+S+C +   +
Sbjct: 478 FGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAAL 537

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           + G +  +    D  LE   +   TA+V +  + G L  A    +SM
Sbjct: 538 EHG-ELIHSHVKDVGLECDLSI-CTALVDMYMKCGQLGIARKMFDSM 582



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAG-FCNLGSGEQALKCFSEMRQAG---I 58
           +  Y+RC S  D   ++  +  R+ ++W A+I+G  CN   GE        +R AG    
Sbjct: 152 VYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGA 211

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
             +  T+ S + A GV+     G  +H    K G      V + L  MY  C +  DA  
Sbjct: 212 RPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARI 271

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           +F  + E+DLVSW SL+      G++ +AV+LF  M+++ ++PD      +L+
Sbjct: 272 LFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLA 324



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 7/160 (4%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN+++            L     MR +G     FT   +  A   +     G  +HA   
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 90  KIGY---DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSRE 146
           + G    D +V V + LV+MYA CG++ DA ++F  M ERD+V+W +++ GC  +G   E
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 147 AVQLFEQMQKTE----IKPDGTTFLVVLSACCHAGFIDKG 182
            +    +M ++      +P+  T    L AC   G +  G
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVG 234


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 181/304 (59%), Gaps = 2/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC +    + ++  V+T++ ++W+A+I+ + +LG  + AL  + +M   G+  + 
Sbjct: 462 ISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNS 521

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ +   ++  + G+ +H+ +  +G + ++ +   LV MY  CG +  A K+F S
Sbjct: 522 ATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDS 581

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ERD+V+WN ++ G   HG + +A++LF  M++  +KP+  TFL +LSACCHAG +DKG
Sbjct: 582 MLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKG 641

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + F  M  + SLE P  +HY  +V LLG++G L EAE  +++M   P   ++  LL AC
Sbjct: 642 RELFTRM-EEYSLE-PNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGAC 699

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N E+ +R AK+     P +   Y+L+SN   + + W++   +R +M N G+ K  G
Sbjct: 700 KMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIG 759

Query: 303 YSWV 306
           +S +
Sbjct: 760 WSTI 763



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 85/150 (56%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++CDS+ D + ++  +  ++ +SW ++I  +C  G  E+A++ F  M ++G+  D   I
Sbjct: 260 YTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVI 319

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + ++  +G  +  + GK  HA I +  +  +V + N L+ MYA C  ++ A  VF  + +
Sbjct: 320 SCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQ 379

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           RD  SW+S+++     G   + ++L+ +MQ
Sbjct: 380 RDTDSWSSMVVAYCKAGLDLKCLELYREMQ 409



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 5/227 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR---QAGID 59
           I  Y++C        V+  +  R+  SW++++  +C  G   + L+ + EM+   +   +
Sbjct: 358 ISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFE 417

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            D  ++ SI+ +   +   + G+  H    K     N  V N L+ MY  CG  + A K+
Sbjct: 418 YDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKI 477

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  +  +D+V+W++L+   +H G+S++A+ L++QM    +KP+  T + V+S+C +   +
Sbjct: 478 FGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAAL 537

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           + G +  +    D  LE   +   TA+V +  + G L  A    +SM
Sbjct: 538 EHG-ELIHSHVKDVGLECDLSI-CTALVDMYMKCGQLGIARKMFDSM 582



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAG-FCNLGSGEQALKCFSEMRQAG---I 58
           +  Y+RC S  D   ++  +  R+ ++W A+I+G  CN   GE        +R AG    
Sbjct: 152 VYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGA 211

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
             +  T+ S + A GV+     G  +H    K G      V + L  MY  C +  DA  
Sbjct: 212 RPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARI 271

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           +F  + E+DLVSW SL+      G++ +AV+LF  M+++ ++PD      +L+
Sbjct: 272 LFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLA 324



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 7/151 (4%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN+++            L     MR +G     FT   +  A   +     G  +HA   
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 90  KIGY---DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSRE 146
           + G    D +V V + LV+MYA CG++ DA ++F  M ERD+V+W +++ GC  +G   E
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 147 AVQLFEQMQKTE----IKPDGTTFLVVLSAC 173
            +    +M ++      +P+  T    L AC
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEAC 225


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 176/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y +CD       V+    + + I++ ++I        GE A+K F EM + G+D D 
Sbjct: 446 IDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDP 505

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F ++S++ A   +S +++GKQ+HA + K  + S+VF  N LV+ YA CG+I DA+  FS 
Sbjct: 506 FVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSG 565

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + E+ +VSW++++ G A HG+ + A+ +F +M    I P+  T   VL AC HAG +D+ 
Sbjct: 566 LPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEA 625

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M+    +E    EHY  ++ LLGRAG L++A   +NSM      +V+ ALL+A 
Sbjct: 626 KRYFNSMKEMFGIERTE-EHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAAS 684

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH + E+   +A+++  L P     +VLL+N   +   WDD   +R LM +  ++K+P 
Sbjct: 685 RVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPA 744

Query: 303 YSWV 306
            SWV
Sbjct: 745 MSWV 748



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 122/225 (54%), Gaps = 10/225 (4%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN +SWN +++ +        A+K F EM   G+  + F  + +V A       + G+++
Sbjct: 165 RNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKV 224

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA++ + GYD +VF  N LV MY+  G I  A  VF  + E D+VSWN+ + GC  HG+ 
Sbjct: 225 HAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHD 284

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHY 203
           + A++L  QM+ + + P+  T   +L AC  +G  + G Q + ++++ +A      +++Y
Sbjct: 285 QHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANAD-----SDNY 339

Query: 204 TA--IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
            A  +V +  + G L++A+   + + +     ++ AL+S C  HG
Sbjct: 340 IAFGLVDMYAKHGLLDDAKKVFDWIPQRD-LVLWNALISGCS-HG 382



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 88/155 (56%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  V   + +SWNA I+G    G  + AL+   +M+ +G+  + FT++SI+ A      
Sbjct: 259 VFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGA 318

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F  G+Q+H  + K   DS+ ++   LV MYA  G ++DA KVF  + +RDLV WN+L+ G
Sbjct: 319 FNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISG 378

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           C+H     EA+ LF +M+K     + TT   VL +
Sbjct: 379 CSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKS 413



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 122/253 (48%), Gaps = 5/253 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + V+  +  R+ + WNA+I+G  +     +AL  F  MR+ G D++  T+ +++ +  
Sbjct: 356 DAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTA 415

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +    + +Q+HAL  K+G+ S+  V N L+  Y  C  +N A +VF      D++++ S
Sbjct: 416 SLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTS 475

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++   +   +  +A++LF +M +  + PD      +L+AC      ++G Q    +    
Sbjct: 476 MITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ 535

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            +    A    A+V    + G + +A+   + +    G   + A++     HG+ + A+ 
Sbjct: 536 FMSDVFAG--NALVYTYAKCGSIEDADLAFSGLPEK-GVVSWSAMIGGLAQHGHGKRALD 592

Query: 254 SAKRVLD--LWPN 264
              R++D  + PN
Sbjct: 593 VFHRMVDEHISPN 605



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 9/250 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + V+  +     +SW++++  + N      AL  F  MR   +  + F +
Sbjct: 47  YSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVL 106

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD- 124
             +V      +GF  G Q+HAL    G   ++FV N LV MY   G +++A  VF     
Sbjct: 107 P-VVLKCAPDAGF--GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGC 163

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ER+ VSWN L+     +     AV++F +M    ++P+   F  V++AC  +  ++ G +
Sbjct: 164 ERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRK 223

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            +  ++R     +   A    A+V +  + G +  A      +      S + A +S C 
Sbjct: 224 VHAMVIRTGYDKDVFTA---NALVDMYSKLGDIRMAAVVFGKVPETDVVS-WNAFISGCV 279

Query: 244 VHGNREIAVR 253
           +HG+ + A+ 
Sbjct: 280 LHGHDQHALE 289



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 9/179 (5%)

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           TI  ++          +G  +HA + K G  + VF +N L+  Y+ C     A +VF  +
Sbjct: 6   TIGPLLTRYAATQSLLQGAHIHAHLLKSGLFA-VF-RNHLLSFYSKCRLPGSARRVFDEI 63

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            +   VSW+SL+   +++   R+A+  F  M+   ++ +     VVL     AGF   G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGF---GT 120

Query: 184 QYFYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           Q   L M      +   A    A+V + G  GF++EA    +          +  L+SA
Sbjct: 121 QLHALAMATGLGGDIFVA---NALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSA 176


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 172/305 (56%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           I  YS+  + +  +  +  + TRN I+WNA++  +   G+ E  LK +S M  Q  +  D
Sbjct: 434 ITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD 493

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           + T  ++      I   K G Q+     K G   NV V N  + MY+ CG I++A K+F 
Sbjct: 494 WVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFD 553

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            ++ +D+VSWN+++ G + HG  ++A + F+ M     KPD  +++ VLS C H+G + +
Sbjct: 554 LLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQE 613

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G  YF +M     + P   EH++ +V LLGRAG L EA+  I+ M   P   V+ ALLSA
Sbjct: 614 GKLYFDMMTRVHGISPG-LEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSA 672

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++HGN E+A  +AK V +L   D   Y+LL+ +       DD+  +R LM ++GI+K P
Sbjct: 673 CKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNP 732

Query: 302 GYSWV 306
           GYSW+
Sbjct: 733 GYSWM 737



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 105/206 (50%), Gaps = 4/206 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S  + + V++S++ RN +SW  +I G        ++++ F++MR   + ID 
Sbjct: 302 IELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQ 361

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F + +++           G+Q+H+L  K G++  + V N L+ +YA CG + +A  VFSS
Sbjct: 362 FALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSS 421

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ERD+VSW S++   +  G   +A + F+ M       +  T+  +L A    G  + G
Sbjct: 422 MSERDIVSWTSMITAYSQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDG 477

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVG 208
           L+ +  M +   + P    + T   G
Sbjct: 478 LKMYSAMLSQKDVTPDWVTYVTLFRG 503



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 14/216 (6%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           +  +  R+ +SWN +IA     G   +AL    EM + G+ +D  T TS + A   +   
Sbjct: 217 FEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSL 276

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
             GKQ+HA + +     + +V + L+ +YA CG+  +A +VF+S+ +R+ VSW  L+ G 
Sbjct: 277 GWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGS 336

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP 198
             +    ++V+LF QM+   +  D      ++S C +   +  G Q   L          
Sbjct: 337 LQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCL-------- 388

Query: 199 RAEHYTAIV------GLLGRAGFLNEAESFINSMSR 228
           ++ H  AIV       L  + G L  AE   +SMS 
Sbjct: 389 KSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSE 424



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 4/132 (3%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
            +F +N ++  YA    I+ A + F  M ERD+VSWN ++   +  G  REA+ L  +M 
Sbjct: 193 TIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMH 252

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214
           +  ++ D TT+   L+AC     +  G Q +  ++R+   ++P  A   +A++ L  + G
Sbjct: 253 RKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA---SALIELYAKCG 309

Query: 215 FLNEAESFINSM 226
              EA+   NS+
Sbjct: 310 SFKEAKRVFNSL 321



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 84/178 (47%), Gaps = 25/178 (14%)

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF-SSMDERDL 128
           G+ G ++G    + +H  +  +G  S VF+QN L+  Y  CGA++DA ++  + + E ++
Sbjct: 31  GSRGALAG---ARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNV 87

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEI-----------KPDGTTFLVVLSACCHAG 177
           ++ N ++ G A  G   +A +LF++M + ++           +P G+        C    
Sbjct: 88  ITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELA 147

Query: 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVY 235
               GL + +    D  +E       TA+V +  R G+++ A    + + R   P+++
Sbjct: 148 PQLLGLFWKFDFWGDPDVE-------TALVDMFVRCGYVDFASRLFSQIER---PTIF 195


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 171/304 (56%), Gaps = 2/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS C    D + V+  ++ ++ + WN++ AG+      E+AL  F E++ +    D 
Sbjct: 496 IDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDE 555

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  ++V A G ++  + G++ H  + K G + N ++ N L+ MYA CG+  DA+K F S
Sbjct: 556 FTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDS 615

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              RD+V WNS++   A+HG  ++A+Q+ E+M    I+P+  TF+ VLSAC HAG ++ G
Sbjct: 616 AASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDG 675

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+ F LM        P  EHY  +V LLGRAG LN+A   I  M   P   V+++LLS C
Sbjct: 676 LKQFELMLRFGI--EPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGC 733

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
              GN E+A  +A+  +   P D   + +LSN+  +   W +A  +R  M   G+ K+PG
Sbjct: 734 AKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPG 793

Query: 303 YSWV 306
            SW+
Sbjct: 794 RSWI 797



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 139/280 (49%), Gaps = 12/280 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSG---EQALKCFSEMRQAGIDIDY 62
           Y++CD   D + V+      + + +NA+I G+  LG+     +AL  F +MR   I    
Sbjct: 395 YAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSL 454

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S++ A   ++     KQ+H L+FK G + ++F  + L+ +Y+ C  + D+  VF  
Sbjct: 455 LTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDE 514

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  +DLV WNS+  G      + EA+ LF ++Q +  +PD  TF  +++A  +   +  G
Sbjct: 515 MKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLG 574

Query: 183 LQYF-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLS 240
            ++   L++      P       A++ +  + G   +A ++F ++ SR+     + +++S
Sbjct: 575 QEFHCQLLKRGLECNPYIT---NALLDMYAKCGSPEDAHKAFDSAASRD--VVCWNSVIS 629

Query: 241 ACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
           +   HG  + A++  ++++   + PN      +LS  S A
Sbjct: 630 SYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHA 669



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 97/176 (55%), Gaps = 1/176 (0%)

Query: 10  DSSLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           D ++D+   V+ ++  ++ ++W  +I+G   +G    +L+ F ++ +  +  D + ++++
Sbjct: 196 DGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTV 255

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           + A  ++   + GKQ+HA I + G + +  + N L+  Y  CG +  A+K+F+ M  +++
Sbjct: 256 LSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNI 315

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +SW +LL G   +   +EA++LF  M K  +KPD      +L++C     +  G Q
Sbjct: 316 ISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQ 371



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 12/200 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-IDYFT 64
           YSR    +  + V+  +  RN +SW+ +++   + G  E++L  F E  +   D  + + 
Sbjct: 89  YSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYI 148

Query: 65  ITSIVGAIGVISGFKEGK----QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           ++S + A   + G   G+    Q+ + + K G+D +V+V   L+  Y   G I+ A  VF
Sbjct: 149 LSSFIQACSGLDG--RGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVF 206

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            ++ E+  V+W +++ GC   G S  ++QLF Q+ +  + PDG     VLSAC    F++
Sbjct: 207 DALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLE 266

Query: 181 KGLQYF-----YLMRNDASL 195
            G Q       Y +  DASL
Sbjct: 267 GGKQIHAHILRYGLEMDASL 286



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 89/173 (51%), Gaps = 3/173 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y +C   +    +++ +  +N ISW  +++G+      ++A++ F+ M + G+  D 
Sbjct: 291 IDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDM 350

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +  +SI+ +   +     G Q+HA   K    ++ +V N L+ MYA C  + DA KVF  
Sbjct: 351 YACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDI 410

Query: 123 MDERDLVSWNSLLLGCAHHGYS---REAVQLFEQMQKTEIKPDGTTFLVVLSA 172
               D+V +N+++ G +  G      EA+ +F  M+   I+P   TF+ +L A
Sbjct: 411 FAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRA 463



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +H  I   G + + ++ N L+ +Y+  G +  A KVF  M ER+LVSW++++  C HHG 
Sbjct: 66  VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125

Query: 144 SREAVQLFEQMQKT-EIKPDGTTFLVVLSAC 173
             E++ +F +  +T +  P+       + AC
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQAC 156


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 172/305 (56%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           I  YS+  + +  +  +  + TRN I+WNA++  +   G+ E  LK +S M  Q  +  D
Sbjct: 444 ITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD 503

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           + T  ++      I   K G Q+     K G   NV V N  + MY+ CG I++A K+F 
Sbjct: 504 WVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFD 563

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            ++ +D+VSWN+++ G + HG  ++A + F+ M     KPD  +++ VLS C H+G + +
Sbjct: 564 LLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQE 623

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G  YF +M     + P   EH++ +V LLGRAG L EA+  I+ M   P   V+ ALLSA
Sbjct: 624 GKLYFDMMTRVHGISPG-LEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSA 682

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++HGN E+A  +AK V +L   D   Y+LL+ +       DD+  +R LM ++GI+K P
Sbjct: 683 CKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNP 742

Query: 302 GYSWV 306
           GYSW+
Sbjct: 743 GYSWM 747



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 105/206 (50%), Gaps = 4/206 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S  + + V++S++ RN +SW  +I G        ++++ F++MR   + ID 
Sbjct: 312 IELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQ 371

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F + +++           G+Q+H+L  K G++  + V N L+ +YA CG + +A  VFSS
Sbjct: 372 FALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSS 431

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ERD+VSW S++   +  G   +A + F+ M       +  T+  +L A    G  + G
Sbjct: 432 MSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTR----NAITWNAMLGAYIQHGAEEDG 487

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVG 208
           L+ +  M +   + P    + T   G
Sbjct: 488 LKMYSAMLSQKDVTPDWVTYVTLFRG 513



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 14/216 (6%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           +  +  R+ +SWN +IA     G   +AL    EM + G+ +D  T TS + A   +   
Sbjct: 227 FEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSL 286

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
             GKQ+HA + +     + +V + L+ +YA CG+  +A +VF+S+ +R+ VSW  L+ G 
Sbjct: 287 GWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGS 346

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP 198
             +    ++V+LF QM+   +  D      ++S C +   +  G Q   L          
Sbjct: 347 LQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCL-------- 398

Query: 199 RAEHYTAIV------GLLGRAGFLNEAESFINSMSR 228
           ++ H  AIV       L  + G L  AE   +SMS 
Sbjct: 399 KSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSE 434



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 115/254 (45%), Gaps = 36/254 (14%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFT 64
           Y++  S  D + ++  +  R+  SWN +++G+         L+ F  M ++G  + + FT
Sbjct: 81  YAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFT 140

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS-- 122
              ++ + G +   +   Q+  L +K  +  +  V+  LV M+  CG ++ A+++FS   
Sbjct: 141 FCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIE 200

Query: 123 -----------------------------MDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                                        M ERD+VSWN ++   +  G  REA+ L  +
Sbjct: 201 RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVE 260

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGR 212
           M +  ++ D TT+   L+AC     +  G Q +  ++R+   ++P  A   +A++ L  +
Sbjct: 261 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA---SALIELYAK 317

Query: 213 AGFLNEAESFINSM 226
            G   EA+   NS+
Sbjct: 318 CGSFKEAKRVFNSL 331



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 82/199 (41%), Gaps = 41/199 (20%)

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV---------- 119
           G+ G ++G    + +H  +  +G  S VF+QN L+  Y  CGA++DA ++          
Sbjct: 15  GSRGALAG---ARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPNV 71

Query: 120 ----------------------FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157
                                 F  M  RD+ SWN+L+ G        + ++ F  M ++
Sbjct: 72  ITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRS 131

Query: 158 -EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFL 216
            +  P+  TF  V+ +C   G  +   Q   L         P  E  TA+V +  R G++
Sbjct: 132 GDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVE--TALVDMFVRCGYV 189

Query: 217 NEAESFINSMSRNPGPSVY 235
           + A    + + R   P+++
Sbjct: 190 DFASRLFSQIER---PTIF 205


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 172/305 (56%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           I  YS+  + +  +  +  + TRN I+WNA++  +   G+ E  LK +S M  Q  +  D
Sbjct: 444 ITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD 503

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           + T  ++      I   K G Q+     K G   NV V N  + MY+ CG I++A K+F 
Sbjct: 504 WVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFD 563

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            ++ +D+VSWN+++ G + HG  ++A + F+ M     KPD  +++ VLS C H+G + +
Sbjct: 564 LLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQE 623

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G  YF +M     + P   EH++ +V LLGRAG L EA+  I+ M   P   V+ ALLSA
Sbjct: 624 GKLYFDMMTRVHGISPG-LEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSA 682

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++HGN E+A  +AK V +L   D   Y+LL+ +       DD+  +R LM ++GI+K P
Sbjct: 683 CKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNP 742

Query: 302 GYSWV 306
           GYSW+
Sbjct: 743 GYSWM 747



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 105/206 (50%), Gaps = 4/206 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S  + + V++S++ RN +SW  +I G        ++++ F++MR   + ID 
Sbjct: 312 IELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQ 371

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F + +++           G+Q+H+L  K G++  + V N L+ +YA CG + +A  VFSS
Sbjct: 372 FALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSS 431

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ERD+VSW S++   +  G   +A + F+ M       +  T+  +L A    G  + G
Sbjct: 432 MSERDIVSWTSMITAYSQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDG 487

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVG 208
           L+ +  M +   + P    + T   G
Sbjct: 488 LKMYSAMLSQKDVTPDWVTYVTLFRG 513



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 14/216 (6%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           +  +  R+ +SWN +IA     G   +AL    EM + G+ +D  T TS + A   +   
Sbjct: 227 FEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSL 286

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
             GKQ+HA + +     + +V + L+ +YA CG+  +A +VF+S+ +R+ VSW  L+ G 
Sbjct: 287 GWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGS 346

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP 198
             +    ++V+LF QM+   +  D      ++S C +   +  G Q   L          
Sbjct: 347 LQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCL-------- 398

Query: 199 RAEHYTAIV------GLLGRAGFLNEAESFINSMSR 228
           ++ H  AIV       L  + G L  AE   +SMS 
Sbjct: 399 KSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSE 434



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 115/254 (45%), Gaps = 36/254 (14%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFT 64
           Y++  S  D + ++  +  R+  SWN +++G+         L+ F  M ++G  + + FT
Sbjct: 81  YAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFT 140

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS-- 122
              ++ + G +   +   Q+  L +K  +  +  V+  LV M+  CG ++ A+++FS   
Sbjct: 141 FCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIE 200

Query: 123 -----------------------------MDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                                        M ERD+VSWN ++   +  G  REA+ L  +
Sbjct: 201 RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVE 260

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGR 212
           M +  ++ D TT+   L+AC     +  G Q +  ++R+   ++P  A   +A++ L  +
Sbjct: 261 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA---SALIELYAK 317

Query: 213 AGFLNEAESFINSM 226
            G   EA+   NS+
Sbjct: 318 CGSFKEAKRVFNSL 331



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 82/199 (41%), Gaps = 41/199 (20%)

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK----------- 118
           G+ G ++G    + +H  +  +G  S VF+QN L+  Y  CGA++DA +           
Sbjct: 15  GSRGALAG---ARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNV 71

Query: 119 ---------------------VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157
                                +F  M  RD+ SWN+L+ G        + ++ F  M ++
Sbjct: 72  ITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRS 131

Query: 158 -EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFL 216
            +  P+  TF  V+ +C   G  +   Q   L         P  E  TA+V +  R G++
Sbjct: 132 GDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVE--TALVDMFVRCGYV 189

Query: 217 NEAESFINSMSRNPGPSVY 235
           + A    + + R   P+++
Sbjct: 190 DFASRLFSQIER---PTIF 205


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 105/292 (35%), Positives = 173/292 (59%), Gaps = 1/292 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ +S  AII+G+  LG  E+AL+ F  ++  G+  +Y T T ++ A+  +
Sbjct: 420 RTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGL 479

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +    GKQ+H  + +    S V +QN L+ MY+ CG +  + ++F +M ER ++SWN++L
Sbjct: 480 AALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAML 539

Query: 136 LGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           +G + HG  RE ++LF  M ++T++KPD  T L VLS C H G  DKGL  F  M +   
Sbjct: 540 VGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKI 599

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
              P+ EHY  +V LLGR+G + EA  FI  M   P  +++ +LL AC+VH N +I   +
Sbjct: 600 EVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFA 659

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +++L++ P +   YV+LSN+  +   W+D   +R LM  + + K+PG S +
Sbjct: 660 GQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSI 711



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 135/271 (49%), Gaps = 27/271 (9%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCF---SEMRQAGI- 58
           I+ Y++CDS  D  NV+  +  RN +SW A+I+ +   G   QAL  F    ++   G+ 
Sbjct: 285 IVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVY 344

Query: 59  -----------------DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQN 101
                            + + FT  +++ +     GF  G+Q+H+LI K+ Y+ +VFV +
Sbjct: 345 AIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGS 404

Query: 102 RLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
            L+ MYA  G I++A  VF  + ERD+VS  +++ G A  G   EA++LF ++Q   +K 
Sbjct: 405 SLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKS 464

Query: 162 DGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220
           +  T+  VL+A      +D G Q + +++R++    P       +++ +  + G L  + 
Sbjct: 465 NYVTYTGVLTALSGLAALDLGKQVHNHVLRSEI---PSFVVLQNSLIDMYSKCGNLTYSR 521

Query: 221 SFINSMSRNPGPSVYKALLSACQVHGN-REI 250
              ++M      S + A+L     HG  RE+
Sbjct: 522 RIFDTMYERTVIS-WNAMLVGYSKHGEGREV 551



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 22/150 (14%)

Query: 52  EMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICG 111
           +M   G ++ +    +I+        F+EG+++HA + K  Y  +VF++ RL+ +Y  C 
Sbjct: 233 QMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCD 292

Query: 112 AINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI------------ 159
           ++ DA+ VF  M ER++VSW +++   +  GY+ +A+ LF    K  +            
Sbjct: 293 SLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLS 352

Query: 160 ---------KPDGTTFLVVLSACCHA-GFI 179
                    +P+  TF  VL++C  + GFI
Sbjct: 353 NPNRPWVCTEPNEFTFATVLTSCTSSLGFI 382


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 175/302 (57%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C   LD  + ++S +  +++++WN++I+ F   G  ++AL  F +M   GI  +  T
Sbjct: 489 YAKC-GRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVT 547

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I+S + A   +     GK++H +I K    +++F ++ L+ MYA CG +  A +VF  M 
Sbjct: 548 ISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMP 607

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++ VSWNS++     HG  +E+V    +MQ+   KPD  TFL ++SAC HAG +++GLQ
Sbjct: 608 DKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQ 667

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M  +  L  PR EH+  +V L  R+G L++A  FI  M   P   ++ ALL AC+V
Sbjct: 668 LFQCMTKE-YLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRV 726

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N E+A  +++ +  L P +   YVL+SN++     WD    +R LM +  I K PGYS
Sbjct: 727 HRNVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYS 786

Query: 305 WV 306
           WV
Sbjct: 787 WV 788



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 127/276 (46%), Gaps = 32/276 (11%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      +N+Y + R  + +  + +I+G+   G  E+AL+ F  + +  I  +  T+
Sbjct: 388 YFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTV 447

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   IS    G+++H  + +  Y+   +V++ L+ MYA CG ++ ++ +FS M  
Sbjct: 448 ASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSL 507

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA--------- 176
           +D V+WNS++   + +G  +EA+ LF QM    IK +  T    LSAC            
Sbjct: 508 KDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEI 567

Query: 177 -GFIDKGLQYFYLMRNDASLE------------------PPRAE-HYTAIVGLLGRAGFL 216
            G I KG     +    A ++                  P + E  + +I+   G  G +
Sbjct: 568 HGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLV 627

Query: 217 NEAESFINSMSR---NPGPSVYKALLSACQVHGNRE 249
            E+ SF++ M      P    + AL+SAC   G  E
Sbjct: 628 KESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVE 663



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 1/190 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS      D ++ +  +  R+ + WN ++ G+   G    A++ F  MR +G + ++
Sbjct: 183 IKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNF 242

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+   +      +    G Q+H+L  K G +  V V N L+ MYA C  ++DA ++F  
Sbjct: 243 ATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFEL 302

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +   DLV+WN ++ GC  +G   EA+ LF  M ++  +PD  T + +L A      + +G
Sbjct: 303 LPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQG 362

Query: 183 LQ-YFYLMRN 191
            + + Y++RN
Sbjct: 363 KEVHGYIIRN 372



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 99/187 (52%), Gaps = 1/187 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   ++  +   + ++WN +I+G    G  ++AL  F +M ++G   D  T+
Sbjct: 287 YAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTL 346

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A+  ++G K+GK++H  I +     + F+ + LV +Y  C  +  A  ++ +   
Sbjct: 347 VSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARA 406

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            D+V  ++++ G   +G S +A+Q+F  + +  IKP+  T   VL AC     +  G + 
Sbjct: 407 IDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEI 466

Query: 185 YFYLMRN 191
           + Y++RN
Sbjct: 467 HGYVLRN 473



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 2/165 (1%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           + + WN +I GF   G    A+  + +M    A    D  T+  +V +   +     G+ 
Sbjct: 103 SSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRL 162

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +H      G  S+V+V + L+ MY+  G + DA   F  M  RD V WN ++ G    G 
Sbjct: 163 VHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGD 222

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL 188
              AV+LF  M+ +  +P+  T    LS C     +  G+Q   L
Sbjct: 223 VGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSL 267



 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 14/156 (8%)

Query: 81  GKQMHALIFKIGYDSN---VFVQNRLVFMYAICGAINDANKVFSSMDER---DLVSWNSL 134
           G Q+HA     G  SN   + +  RL+ MY +     DA  VFS++        + WN L
Sbjct: 51  GLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPWNWL 110

Query: 135 LLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           + G    G+   AV  + +M        PD  T   V+ +C   G +  G     L+   
Sbjct: 111 IRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLG----RLVHRT 166

Query: 193 ASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSM 226
           A      ++ Y  +A++ +   AG L +A    + M
Sbjct: 167 ARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGM 202


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 173/289 (59%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+ ++  R+ +SW ++IAG+   G  + +++ F EM +  +  +  T+  I+ A   ++ 
Sbjct: 281 VFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAA 340

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G+++H  I + G+  +  V N LV MY  CGA+  A  +F  + E+DLVSW  ++ G
Sbjct: 341 LERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAG 400

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
              HGY  EA+  F +M+ + I+PD  +F+ +L AC H+G +D+G  +F +MRN+  +E 
Sbjct: 401 YGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIE- 459

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P++EHY  IV LL RAG L++A  FI  M   P  +++ ALL  C+++ + ++A + A+ 
Sbjct: 460 PKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEH 519

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           V +L P +   YVLL+N+    + W++   +R  +  RG+RK PG SW+
Sbjct: 520 VFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWI 568



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 28/182 (15%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R+ ISWN++I+G+ + G  E+ L  F +M   GI+ D  T+ S+       
Sbjct: 205 RKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV------- 257

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                                + + N L+ MY+  G +N A +VF +M ER +VSW S++
Sbjct: 258 --------------------ELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMI 297

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G A  G S  +V+LF +M+K ++ P+  T   +L AC     +++G + + +++RN  S
Sbjct: 298 AGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFS 357

Query: 195 LE 196
           L+
Sbjct: 358 LD 359



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 121/265 (45%), Gaps = 25/265 (9%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           +N  I  FC LG+  +A++  ++  +   D++  T  S++     +   ++G+++H++I 
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKP--DLELRTYCSVLQLCADLKSIQDGRRIHSIIQ 128

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
               + +  + ++LVFMY  CG + +  ++F  +    +  WN L+ G A  G  RE++ 
Sbjct: 129 SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLS 188

Query: 150 LFEQMQKTEIK--------------PDGTTFLVVLSACCHAGFIDKGLQYFYLM------ 189
           LF++M++  I+               D  ++  ++S     G  +KGL  F  M      
Sbjct: 189 LFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGIN 248

Query: 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNRE 249
            + A++          ++ +  ++G LN A     +M      S + ++++     G  +
Sbjct: 249 TDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVS-WTSMIAGYAREGLSD 307

Query: 250 IAVRSAKRV--LDLWPNDPAIYVLL 272
           ++VR    +   DL+PN   +  +L
Sbjct: 308 MSVRLFHEMEKEDLFPNSITMACIL 332


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 104/289 (35%), Positives = 173/289 (59%), Gaps = 2/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  ++ R+  SW  +++ +     GE+A++CF  M +     +  T+ + +     ++ 
Sbjct: 521 VFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLAC 580

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G Q+H+   K G++S+V V + LV MY  CG + DA  +F   D  DLV WN+++ G
Sbjct: 581 LGSGLQLHSYTIKSGWNSSV-VSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICG 639

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG+  +A++ F++M      PD  TF+ VLSAC HAG +D+G +YF L+ +   + P
Sbjct: 640 YAQHGHGYKALEAFQEMIDEGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITP 699

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
              EHY  +V +L +AG L EAES IN M   P  S++K +L AC++HGN EIA R+A++
Sbjct: 700 T-LEHYACMVDILAKAGKLAEAESLINEMPLTPDASLWKTILGACRMHGNIEIAERAAEK 758

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +  P+D +  +LLSN+      W+D   +R+++ +RG++K+PG SW+
Sbjct: 759 LFESQPDDISSCILLSNIYADLKRWNDVAKLRSMLVDRGVKKEPGCSWI 807



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 81/145 (55%), Gaps = 2/145 (1%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
            R+ +SWNA++  +   G   + +  F ++ ++G +I  +T+ +++     +   K G+ 
Sbjct: 224 VRSDVSWNALLNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQA 283

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC-AHHG 142
           +H L+ K G +++  + N L+ MY+ C +  DA +VF+ +DE D+V   SL++ C   H 
Sbjct: 284 VHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHC-SLMISCFDRHD 342

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFL 167
            + EA  +F QM    +KP+  TF+
Sbjct: 343 MAPEAFDIFMQMSDMGVKPNQYTFV 367



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 73/156 (46%)

Query: 29  SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
           SWN +++GF +  + E  L+ F E+   G+  + +T   I+     +   + G Q+HA +
Sbjct: 431 SWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACV 490

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
            K G+  +  V   L+ MY   G   +A  VF  + ERD+ SW  ++   A      +A+
Sbjct: 491 LKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAI 550

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           + F  M +   +P+  T    LS C     +  GLQ
Sbjct: 551 ECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQ 586



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 82/177 (46%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D ++V+  +  R+ ++W A+++     G    AL+ F+EM + G+  + F +
Sbjct: 105 YCKCGRLADARSVFDGMPHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFAL 164

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            + + A  V S      Q+HA   K+    + +V + LV  Y  CG ++ A +       
Sbjct: 165 AAALKACTVGSDLGFTPQVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPV 224

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           R  VSWN+LL   A  G   + + +F+++ ++  +    T   VL  C   G    G
Sbjct: 225 RSDVSWNALLNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSG 281



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 51/97 (52%)

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             + GK +HA + + G   + F+ + L+ MY  CG + DA  VF  M  RD+V+W +++ 
Sbjct: 75  ALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMPHRDVVAWTAMVS 134

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
                G +  A++LF +M +  + P+G      L AC
Sbjct: 135 AITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKAC 171



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 75/171 (43%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C S+ D   V++ +   + +  + +I+ F       +A   F +M   G+  + 
Sbjct: 304 IEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQ 363

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T   +             + +HA I K G+     V + +V MY   GA+ DA   F  
Sbjct: 364 YTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDL 423

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           M   D+ SWN+LL G          +++F+++    +  +  T++ +L  C
Sbjct: 424 MQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCC 474



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 12/172 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +  D + ++    T + + WN II G+   G G +AL+ F EM   G   D  T 
Sbjct: 609 YVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITF 668

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A        EG++   L+  + G    +     +V + A  G + +A  + + M 
Sbjct: 669 VGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEMP 728

Query: 125 -ERDLVSWNSLLLGCAHHG----YSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
              D   W ++L  C  HG      R A +LFE       +PD  +  ++LS
Sbjct: 729 LTPDASLWKTILGACRMHGNIEIAERAAEKLFES------QPDDISSCILLS 774


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/290 (34%), Positives = 177/290 (61%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           N++S +  +N ++WN+II+ +C     + ++  FS++ +  +  D  + TS++ AI  ++
Sbjct: 499 NIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVA 558

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
              +GK +H  + ++    ++ V+N L+ MY  CG +  A  +F  + E++LV+WNS++ 
Sbjct: 559 ALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIG 618

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G   HG   +A++LF++M+ + IKPD  TFL +LS+C H+G I++GL  F +M+    +E
Sbjct: 619 GYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIE 678

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
            PR EHY  IV L GRAG L +A SF+ +M   P  S++ +LL +C++H N E+    A 
Sbjct: 679 -PRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLELGEMVAN 737

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++L++ P+  + YV L N+    + WD   ++R  M  +G++K PG SW+
Sbjct: 738 KLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRASMKEKGLKKTPGCSWI 787



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 137/274 (50%), Gaps = 7/274 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + V++ V  +    WNA+I+ +   G    AL+ + +M+   +  D FTI
Sbjct: 286 YGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTI 345

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ +  +   +  G+ +H  I K    S++ +Q+ L+ MY+  G  N AN +FS+M E
Sbjct: 346 LNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKE 405

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RD+V+W S++ G   +   +EA+  F  M+   +KPD      ++SAC     +D G   
Sbjct: 406 RDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTI 465

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + +++++   L+   A   ++++ +  + GF   A +  + M        + +++S    
Sbjct: 466 HGFVIKSGLQLDVFVA---SSLLDMYSKFGFPERAGNIFSDMPLK-NLVAWNSIISCYCR 521

Query: 245 HGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVS 276
           +   ++++    +VL  DL+P+  +   +L+ +S
Sbjct: 522 NNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAIS 555



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 114/229 (49%), Gaps = 7/229 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I TY +C    + + ++  ++ R N ++WN +I GF   G  E +L+ +   +   + + 
Sbjct: 181 IDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVV 240

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             + T  + A G       GKQ+H    K+G++ + +V   L+ MY  C  I  A KVF+
Sbjct: 241 SSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFN 300

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + ++++  WN+L+     +GY+ +A+++++QM+   +  D  T L VL++   AG  D 
Sbjct: 301 EVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDL 360

Query: 182 GLQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSR 228
           G     L+  +    P ++     +A++ +  + G  N A S  ++M  
Sbjct: 361 G----RLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKE 405



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 126/272 (46%), Gaps = 7/272 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+   S    +++S+++ R+ ++W ++I+GFC     ++AL  F  M    +  D   +
Sbjct: 387 YSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIM 446

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A   +     G  +H  + K G   +VFV + L+ MY+  G    A  +FS M  
Sbjct: 447 ASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPL 506

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           ++LV+WNS++     +     ++ LF Q+ + ++ PD  +F  VL+A      + KG   
Sbjct: 507 KNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSV 566

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + YL+R      P   +    ++ +  + G L  A+     +S       + +++     
Sbjct: 567 HGYLVR---LWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEK-NLVAWNSMIGGYGS 622

Query: 245 HG--NREIAVRSAKRVLDLWPNDPAIYVLLSN 274
           HG  ++ I +    R   + P+D     LLS+
Sbjct: 623 HGECSKAIELFDEMRSSGIKPDDVTFLSLLSS 654



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 114/259 (44%), Gaps = 29/259 (11%)

Query: 6   YSRCDSSLDFQNVY-----SSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           Y +C +  D   V+     S V   +   WN+II G+   G  E+ +  F  M+      
Sbjct: 98  YVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQS----- 152

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
                          SG+KEGKQ+H+ I +   + + F++  L+  Y  CG   +A  +F
Sbjct: 153 ---------------SGYKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLF 197

Query: 121 SSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
             + +R ++V+WN ++ G   +G    +++ +   +   +K   ++F   LSAC    F+
Sbjct: 198 KKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFV 257

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
             G Q           + P    +T+++ + G+   +  AE   N +  +    ++ AL+
Sbjct: 258 SFGKQVHCDAIKVGFEDDPYV--HTSLLTMYGKCQMIESAEKVFNEVP-DKEIELWNALI 314

Query: 240 SACQVHGNREIAVRSAKRV 258
           SA   +G    A+R  K++
Sbjct: 315 SAYVGNGYAYDALRIYKQM 333



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 2/138 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      Q+++  +  +N ++WN++I G+ + G   +A++ F EMR +GI  D  T 
Sbjct: 589 YIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTF 648

Query: 66  TSIVGAIGVISGFKEGKQMHALI-FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            S++ +       +EG  +  ++  K G +  +     +V +Y   G + DA     +M 
Sbjct: 649 LSLLSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMP 708

Query: 125 -ERDLVSWNSLLLGCAHH 141
            E D   W SLL  C  H
Sbjct: 709 VEPDRSIWLSLLCSCKIH 726



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)

Query: 45  QALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLV 104
           +ALK ++   ++ +    FT  S++ A   +S  + GK +H+ I   G  S+ ++ + L+
Sbjct: 39  EALKLYT---KSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLI 95

Query: 105 FMYAICGAINDANKVFSSMDER-----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
            +Y  CG   DA KVF  + +      D+  WNS++ G    G   E +  F +MQ +  
Sbjct: 96  NIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGY 155

Query: 160 K 160
           K
Sbjct: 156 K 156


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 115/316 (36%), Positives = 173/316 (54%), Gaps = 26/316 (8%)

Query: 16  QNVYSSVRTRNQISW----NAIIAGFCNLGSGEQA------------LKCFSEMRQAGID 59
           + V++ V   NQ +     NA+++ +   G  E+A            + C +E R A +D
Sbjct: 379 RQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMISCITEGRDAPLD 438

Query: 60  ---------IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC 110
                    I   T  S++ A   +    +G+Q+HA+  K G+ S+ FV N LV MY+ C
Sbjct: 439 HRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRC 498

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G + DA + F+ + +R+++SW S++ G A HGY+  A+ LF  M  T +KP+  T++ VL
Sbjct: 499 GYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVL 558

Query: 171 SACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNP 230
           SAC H G + +G +YF  M+ D  L  PR EHY  +V LL R+G + EA  FIN M    
Sbjct: 559 SACSHVGLVREGKEYFRSMQRDHGL-IPRMEHYACMVDLLARSGLVKEALEFINEMPLKA 617

Query: 231 GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRT 290
              V+K LL AC+ H N E+   +AK V++L P DPA YVLLSN+      WD+   IR+
Sbjct: 618 DALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRS 677

Query: 291 LMYNRGIRKKPGYSWV 306
            M +  + K+ G SW+
Sbjct: 678 AMRDNNLNKETGLSWM 693



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 111/218 (50%), Gaps = 12/218 (5%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  +  + W  +I+ +      E+A++ F +  + G + D +T++S++ A   +
Sbjct: 208 RKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTEL 267

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA---ICGAINDANKVFSSMDERDLVSWN 132
              + G Q+H+L  ++G+ S+  V   LV MYA   I  A++ ANKVF  M + D++SW 
Sbjct: 268 GSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWT 327

Query: 133 SLLLGCAHHGYSREAVQ-LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMR 190
           +L+ G    G     V  LF +M    IKP+  T+  +L AC +    D G Q + ++++
Sbjct: 328 ALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIK 387

Query: 191 NDASLEPPRAEHYT--AIVGLLGRAGFLNEAESFINSM 226
           ++ +     A H    A+V +   +G + EA    N +
Sbjct: 388 SNQA-----AAHTVGNALVSMYAESGCMEEARRVFNQL 420



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 17/295 (5%)

Query: 7   SRCDSSLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGE-QALKCFSEMRQAGIDIDYFT 64
           S  + ++D+ N V+  +R  + ISW A+I+G+   G  E + +  F EM    I  ++ T
Sbjct: 302 SNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHIT 361

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +SI+ A   IS    G+Q+HA + K    +   V N LV MYA  G + +A +VF+ + 
Sbjct: 362 YSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLY 421

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ER ++S       C   G  R+A  L  ++ + ++    +TF  ++SA    G + KG Q
Sbjct: 422 ERSMIS-------CITEG--RDA-PLDHRIGRMDMGISSSTFASLISAAASVGMLTKG-Q 470

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
             + M   A     R     ++V +  R G+L +A    N + ++     + +++S    
Sbjct: 471 QLHAMTLKAGFGSDRFVS-NSLVSMYSRCGYLEDACRSFNEL-KDRNVISWTSMISGLAK 528

Query: 245 HG--NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
           HG   R +++     +  + PND     +LS  S      +     R++  + G+
Sbjct: 529 HGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGL 583



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 92/186 (49%), Gaps = 3/186 (1%)

Query: 6   YSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YSRC +    +NV+  +R  R+ +SW A+ +     G+  ++L    EM ++G+  + +T
Sbjct: 94  YSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEMLESGLLPNAYT 153

Query: 65  ITSIVGAIGVISGF-KEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           + ++  A      +   G  +  L+ K+G + +++ V + L+ M A  G +  A KVF  
Sbjct: 154 LCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVFDG 213

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + E+ +V W  L+        + EAV++F    +   +PD  T   ++SAC   G +  G
Sbjct: 214 LIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLG 273

Query: 183 LQYFYL 188
           LQ   L
Sbjct: 274 LQLHSL 279



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 95/201 (47%), Gaps = 27/201 (13%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---DIDY 62
           YSRC    D    ++ ++ RN ISW ++I+G    G  E+AL  F +M   G+   D+ Y
Sbjct: 495 YSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTY 554

Query: 63  FTITSIVGAIGVISGFKEGKQM-------HALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
             + S    +G++   +EGK+        H LI ++ + +       +V + A  G + +
Sbjct: 555 IAVLSACSHVGLV---REGKEYFRSMQRDHGLIPRMEHYAC------MVDLLARSGLVKE 605

Query: 116 ANKVFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT--EIKP-DGTTFLVVLS 171
           A +  + M  + D + W +LL  C  H    + +++ E   K   E++P D   ++++ +
Sbjct: 606 ALEFINEMPLKADALVWKTLLGACRSH----DNIEVGEIAAKNVIELEPRDPAPYVLLSN 661

Query: 172 ACCHAGFIDKGLQYFYLMRND 192
               AG  D+  +    MR++
Sbjct: 662 LYADAGLWDEVARIRSAMRDN 682


>gi|225217011|gb|ACN85298.1| EMB2261 putative [Oryza coarctata]
          Length = 621

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 177/301 (58%), Gaps = 3/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C   ++ + V+  ++ RN +SW A++ G+C  G  E+ +  F EM +   D D++++
Sbjct: 283 YAKCRMIVEARKVFDRMQVRNAVSWCALLGGYCQNGEYEKVVALFREMDKD--DDDWYSL 340

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A   +S    GK++H    ++G   NV V++ LV +YA CGA++ A  VF +   
Sbjct: 341 GTVLRACAGLSSVNPGKEIHCRFLRMGGWRNVVVESALVDLYAKCGAVDYAYGVFEASIV 400

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ ++WN+++ G A +G+   A+ LF++M K   +PD  +F+ VL AC H G +++G +Y
Sbjct: 401 RNTITWNAMIGGFAQNGHGERAIDLFDRMVKEGPRPDYISFVGVLFACSHTGMVEQGRKY 460

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D S+ P   EHY  +V LL R   L EAE  IN        S++ A+L A   H
Sbjct: 461 FNSMSKDYSITPG-IEHYNCMVDLLSRVELLEEAEDLINKSPFRDDSSLWAAILGASATH 519

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++A R AK+ ++L P     YVLL NV +    W+DA DIR+LM +R ++K+PG SW
Sbjct: 520 SNPDVAERVAKKTMELEPQYHLSYVLLENVYRTVGRWEDALDIRSLMKSRKVKKEPGMSW 579

Query: 306 V 306
           +
Sbjct: 580 I 580



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 3/180 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFT 64
           Y    +  D +  +  +RT + I + ++I+ F      E+A++    M    G+  D  T
Sbjct: 181 YGHAAAPGDARKAFEEMRTPDGICYTSLISAFVRNDWFEEAVRWSRSMLMLNGVRPDGCT 240

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++ A+G +     G+Q HA +   G   NV V++  + MYA C  I +A KVF  M 
Sbjct: 241 FGSMMTALGNLKMGNRGRQAHAQVVTRGLCGNVIVESSTLDMYAKCRMIVEARKVFDRMQ 300

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            R+ VSW +LL G   +G   + V LF +M K +   D  +   VL AC     ++ G +
Sbjct: 301 VRNAVSWCALLGGYCQNGEYEKVVALFREMDKDD--DDWYSLGTVLRACAGLSSVNPGKE 358



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 3/169 (1%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYFTITSIVGAIGVIS 76
           +  +  R+ ++ ++I+A F   G   +AL     M     D+  +    ++ V A  V+ 
Sbjct: 91  FDDLPRRDVVAHSSILAAFLRAGMPRRALSSLRSMLAGADDVSPNAHAFSAAVKACAVLR 150

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G  +H  I   G+  +  V + LV MY    A  DA K F  M   D + + SL+ 
Sbjct: 151 DRNAGACLHGSILVRGFGDDDIVLSALVDMYGHAAAPGDARKAFEEMRTPDGICYTSLIS 210

Query: 137 GCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQ 184
               + +  EAV+    M     ++PDG TF  +++A  +    ++G Q
Sbjct: 211 AFVRNDWFEEAVRWSRSMLMLNGVRPDGCTFGSMMTALGNLKMGNRGRQ 259


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 105/281 (37%), Positives = 167/281 (59%), Gaps = 1/281 (0%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           ++ +WNA+I G    G  E+A++ F +M++ G   +  TI+SI+ A       + GK++H
Sbjct: 365 DEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIH 424

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
             +F+     ++     L++MYA CG +N +  VF  M  +D+V+WN++++  A HG  +
Sbjct: 425 CYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGK 484

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205
           EA+ LF++M  + ++P+  TF  VLS C H+  +++G+Q F  M  D  +EP  A HY+ 
Sbjct: 485 EALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPD-ANHYSC 543

Query: 206 IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265
           +V +  RAG LNEA  FI  M   P  S + ALL+AC+V+ N E+A  SAK++ ++ PN+
Sbjct: 544 VVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNN 603

Query: 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           P  YV L N+      W +A  +R LM  RGI K PG SW+
Sbjct: 604 PGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWL 644



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 125/281 (44%), Gaps = 40/281 (14%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C      + V+  +  R+ +SW ++ + +   G   + +  F EM  +G+  + 
Sbjct: 206 IHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNP 265

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T++SI+ A   +   K GK++H    + G   N+FV + LV +YA C ++ +A  VF  
Sbjct: 266 MTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDL 325

Query: 123 MDERDLVSWNSLLL-----------------------------------GCAHHGYSREA 147
           M  RD+VSWN +L                                    GC  +G S EA
Sbjct: 326 MPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEA 385

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAI 206
           V++F +MQK   KP+  T   +L AC  +  +  G + + Y+ R+    +       TA+
Sbjct: 386 VEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRH---WKVGDLTSTTAL 442

Query: 207 VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN 247
           + +  + G LN + +  + M R      +  ++ A  +HGN
Sbjct: 443 LYMYAKCGDLNLSRNVFDMMRRK-DVVAWNTMIIANAMHGN 482



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 78/167 (46%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++ ++   +  + + +I+     G   +A+K +S +++ GI  D     +   A  V 
Sbjct: 118 RQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVS 177

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                 K++H    + G  S+VFV N L+  Y  C  +  A +VF  +  RD+VSW SL 
Sbjct: 178 GDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLS 237

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
                 G+ R+ + +F +M  + +KP+  T   +L AC     +  G
Sbjct: 238 SCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSG 284



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query: 102 RLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
           RL+ +    G  N A ++F ++ + D  + ++L+     HG S EA++++  +Q+  IKP
Sbjct: 103 RLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKP 162

Query: 162 DGTTFLVVLSACCHAG 177
           D   FL    AC  +G
Sbjct: 163 DMPVFLAAAKACAVSG 178


>gi|414584791|tpg|DAA35362.1| TPA: hypothetical protein ZEAMMB73_898339 [Zea mays]
          Length = 605

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 173/300 (57%), Gaps = 2/300 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +     D    ++ +R ++ +SW  + AG  + G   +A+    +M   G+  + +T 
Sbjct: 295 YMKSKCLADGVMAFAEIRCKDVVSWTGLAAGCLHCGEPAKAIGILGQMMLDGVMPNNYTF 354

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +   A   ++   EG+++H  + K+G DS+V V N L+ MYA CG++  A+KVF SM +
Sbjct: 355 ATSANACASLTDLDEGRKVHGYVIKLGDDSDVGVNNALIDMYAKCGSVACAHKVFQSMQQ 414

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R ++SW ++++  AH+G +REAV++F+ M    + P+  T + VL AC   GF+D+G  Y
Sbjct: 415 RPVISWTAMIMAFAHNGRAREAVEVFDDMLLRGVAPNRVTLVCVLYACSQGGFVDEGWIY 474

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M++   ++P   +HY  +V LLG+AG + EAE  I+ M   PG  V++ALL AC +H
Sbjct: 475 FNAMKDKFGIQPGE-DHYACMVDLLGKAGQIEEAEELISGMPFRPGVLVWQALLGACHLH 533

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN  +  R+A+  L L  +DP+ Y+LL N       WD A  +R LM ++ + K PG SW
Sbjct: 534 GNEAVGRRAAEHALALENDDPSTYMLLCNTLAGQHDWDGARSVRVLMGSQTL-KLPGSSW 592



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 2/183 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ Y +C        V   +  RN +SW+A IAG         AL  F  MR AG   + 
Sbjct: 90  LIAYFKCRLPHLGLRVLDEMPRRNAVSWSAAIAGLTQGDRARDALALFRRMRLAGCPPNE 149

Query: 63  FTITSIVGAIGVIS-GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           F + S +GAI +   G    +Q++AL  ++G+ S+VF+ N  +   A    + DA ++F 
Sbjct: 150 FALASALGAISLAPVGTGHARQLYALSVRLGFGSSVFLTNAFLAAMARHLQLEDAVRLFD 209

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
               RD+VSWN+LL   A H +S +   L+ +M +  +  DG +F  +LS       +  
Sbjct: 210 GASARDIVSWNTLLAAFARH-WSVQGWILWRRMVREAVGADGFSFSTILSGLAVTASLAG 268

Query: 182 GLQ 184
           GLQ
Sbjct: 269 GLQ 271



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 9/220 (4%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   ++     R+ +SWN ++A F    S  Q    +  M +  +  D F+ ++I+  + 
Sbjct: 203 DAVRLFDGASARDIVSWNTLLAAFARHWS-VQGWILWRRMVREAVGADGFSFSTILSGLA 261

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           V +    G Q+HA + K G+  +V V N LV MY     + D    F+ +  +D+VSW  
Sbjct: 262 VTASLAGGLQVHAQLVKSGFCDDVCVGNSLVEMYMKSKCLADGVMAFAEIRCKDVVSWTG 321

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ---YFYLMR 190
           L  GC H G   +A+ +  QM    + P+  TF    +AC     +D+G +   Y   + 
Sbjct: 322 LAAGCLHCGEPAKAIGILGQMMLDGVMPNNYTFATSANACASLTDLDEGRKVHGYVIKLG 381

Query: 191 NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNP 230
           +D+ +         A++ +  + G +  A     SM + P
Sbjct: 382 DDSDVGV-----NNALIDMYAKCGSVACAHKVFQSMQQRP 416



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 37/78 (47%)

Query: 95  SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
           S+VF+ N L+  Y  C   +   +V   M  R+ VSW++ + G      +R+A+ LF +M
Sbjct: 81  SHVFLHNHLLIAYFKCRLPHLGLRVLDEMPRRNAVSWSAAIAGLTQGDRARDALALFRRM 140

Query: 155 QKTEIKPDGTTFLVVLSA 172
           +     P+       L A
Sbjct: 141 RLAGCPPNEFALASALGA 158


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 172/291 (59%), Gaps = 2/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++V++++ + + +SW  II+       G +A++ F  M       +   +T ++G  G +
Sbjct: 504 RDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNL 563

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G+Q+H +  K+G DS + V N LV MY  C +  D+ KVF SM+ERD+ +WN+++
Sbjct: 564 GAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSA-DSLKVFDSMEERDIFTWNTII 622

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG  REA+++++ M    + P+  TF+ +L AC H+G +D+G Q+F  M +D  L
Sbjct: 623 TGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGL 682

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
            P   EHY  +V LLGRAG +  AE FI  M   P   ++ ALL AC++H N EI  R+A
Sbjct: 683 TP-LLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAA 741

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++  + P++   YV+LSN+  +   WD+   +R LM  RG+ K PG SW+
Sbjct: 742 EKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWM 792



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 96/199 (48%), Gaps = 6/199 (3%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +++++ +  RN ISW  +IAG+   G  EQAL     + + G+     ++TS   A   I
Sbjct: 372 EDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNI 431

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + GKQ+H+L  K G   N +V N L+ +Y    +I    ++F  M  +D VS+NS +
Sbjct: 432 EALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFM 491

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
                +    EA  +F  M      PD  ++  ++SAC  A   ++ ++ F  M ++  L
Sbjct: 492 SALVQNNLFDEARDVFNNMP----SPDVVSWTTIISACAQADQGNEAVEIFRSMLHEREL 547

Query: 196 EPPRAEHYTAIVGLLGRAG 214
             P     T ++GL G  G
Sbjct: 548 --PNPPILTILLGLSGNLG 564



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 19/213 (8%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFTITSIVGAIGV 74
           + V+ S+  R+ I+WN++I  +CN G           M  AG  + D  +  ++     +
Sbjct: 53  REVFDSMPFRDIIAWNSMIFAYCNNG-----------MPDAGRSLADAISGGNLRTGTIL 101

Query: 75  ISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           +SG+    ++     +F      N    N +V  Y   G I  A K+F +M  RD+ SWN
Sbjct: 102 LSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSWN 161

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           ++L G  H     EA  LFE+M +     +G ++ V++S         +    F  M  +
Sbjct: 162 TMLTGYCHSQLMEEARNLFERMPER----NGVSWTVMISGYVLIEQHGRAWDMFRTMLCE 217

Query: 193 A-SLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
             + E P      + V  LG+ G L      ++
Sbjct: 218 GMTPEQPNLVSVLSAVRHLGKPGILESIHVLVH 250



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 13/221 (5%)

Query: 9   CDSSL--DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT 66
           C S L  + +N++  +  RN +SW  +I+G+  +    +A   F  M   G+  +   + 
Sbjct: 168 CHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLV 227

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI-CGAINDANKVFSSMDE 125
           S++ A+  +      + +H L+ K G++ +V V   ++  Y      ++ A K F  M  
Sbjct: 228 SVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAA 287

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+  +W++++   +  G   +A  ++++     + P  T+ L  L+     G ID     
Sbjct: 288 RNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSV-PSRTSMLTGLA---RYGRIDDAKIL 343

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           F        +  P    + A++    +   ++EAE   N M
Sbjct: 344 F------DQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRM 378



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 15/173 (8%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C SS D   V+ S+  R+  +WN II G+   G G +A++ +  M  AG+  +  T 
Sbjct: 595 YFKC-SSADSLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTF 653

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVFSSM 123
             ++ A        EG Q    +    Y     +++   +V +    G +  A      M
Sbjct: 654 VGLLHACSHSGLVDEGHQFFKSMSS-DYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDM 712

Query: 124 D-ERDLVSWNSLLLGCAHHGY----SREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             E D V W++LL  C  H       R A +LF       I+P      V+LS
Sbjct: 713 PIEPDSVIWSALLGACKIHKNVEIGRRAAEKLF------SIEPSNAGNYVMLS 759


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 105/289 (36%), Positives = 171/289 (59%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ ++   N +SWN+IIA     G   + +  F++MR+ GI+ D  TI +++ A   +  
Sbjct: 194 LFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGV 253

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K  + +H L+F  G+ + + +   L+  YA  G ++ +  VF+ +   D V+W ++L G
Sbjct: 254 GKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAG 313

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG  REA++LFE M    ++PD  TF  +LSAC H+G +++G  YF +M     +E 
Sbjct: 314 YAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIE- 372

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           PR +HY+ +V LLGR G LN+A   I +M   P   V+ ALL AC+VHGN E+    A+ 
Sbjct: 373 PRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEH 432

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++++ P DP  Y++LSN+  A+  W DA  +R L+  RG+++ PGYS +
Sbjct: 433 LINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSI 481



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 6/178 (3%)

Query: 2   QILT-YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGID 59
           Q++T Y++   + D   ++  +  ++ +SWN++I+GF        +L  F  M+ +  + 
Sbjct: 79  QLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSR--CLHMSLTAFYTMKFEMSVK 136

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            +  TI S++ A         GK +H    K+G    V V N L+ MY   G +  A ++
Sbjct: 137 PNEVTILSMISACS--GALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRL 194

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           F ++ + + VSWNS++     +G +RE +  F +M++  I+ D  T L +L AC H G
Sbjct: 195 FEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLG 252



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           TY++         V++ V   ++++W A++AG+   G G +A+K F  M   G++ D+ T
Sbjct: 282 TYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVT 341

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            T ++ A        EGK    ++ ++ G +  V   + +V +   CG +NDA +V  +M
Sbjct: 342 FTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNM 401

Query: 124 D-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
             E +   W +LL  C  HG      ++ E +   E
Sbjct: 402 PMEPNAGVWGALLGACRVHGNIELGKEVAEHLINME 437



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 93/187 (49%), Gaps = 16/187 (8%)

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +++++ A+         +++HA +FK     + F+ ++LV  Y   G   DA K+F  M 
Sbjct: 42  VSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMP 101

Query: 125 ERDLVSWNSLLLG---CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            +DLVSWNSL+ G   C H   +      FE      +KP+  T L ++SAC  +G +D 
Sbjct: 102 HKDLVSWNSLISGFSRCLHMSLTAFYTMKFEM----SVKPNEVTILSMISAC--SGALDA 155

Query: 182 GLQYF--YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           G +Y   + ++   +LE   A    +++ + G++G L  A     ++  +P    + +++
Sbjct: 156 G-KYIHGFGIKVGGTLEVKVA---NSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSII 210

Query: 240 SACQVHG 246
           +A   +G
Sbjct: 211 AAQVTNG 217


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 107/289 (37%), Positives = 165/289 (57%), Gaps = 1/289 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  ++ +SWN +IA + N     +A+  F +M    +D D  +I S++ A G +
Sbjct: 260 KEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDL 319

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S    G+++H  + +     N+ ++N L+ MYA CG +  A +VF  M  RD+VSW S++
Sbjct: 320 SALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMI 379

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
                +G  R+AV LF +MQ   + PD   F+ VLSAC HAG +D+G  YF LM  +  +
Sbjct: 380 SAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKI 439

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
             PR EH+  +V LLGRAG ++EA  FI  M   P   V+ ALLSAC+V+ N  I + +A
Sbjct: 440 V-PRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAA 498

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
            ++  L P     YVLLSN+      W+D   +R++M  +GI+K PG S
Sbjct: 499 DQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVS 547



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 90/168 (53%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y+ C      ++++  +  +N + +N +I  + N      AL  F  M   GID D++T
Sbjct: 80  AYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYT 139

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
              ++ A         G Q+HA + ++G D NVFV N L+ MY  CG + +A +V   M 
Sbjct: 140 YPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMP 199

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            RD+VSWNSL+ GCA +G   +A+++ ++M+   +KPD  T   +L A
Sbjct: 200 CRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA 247



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 114/289 (39%), Gaps = 60/289 (20%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C   ++   V   +  R+ +SWN+++AG    G  + AL+   EM   G+  D 
Sbjct: 179 ISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDA 238

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ A+                      +N  + N           ++   ++F  
Sbjct: 239 GTMASLLPAV----------------------TNTCLDN-----------VSFVKEMFMK 265

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--------- 173
           +  + LVSWN ++    ++    EAV +F QM+   + PD  +   VL AC         
Sbjct: 266 LANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLG 325

Query: 174 --CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPG 231
              H   + K LQ   L+ N             A++ +  + G L  A    + M     
Sbjct: 326 RRIHEYVVRKRLQPNLLLEN-------------ALIDMYAKCGCLEYAREVFDQMKFRDV 372

Query: 232 PSVYKALLSACQVHGNREIAVRSAKRVLDLW--PNDPAIYVLLSNVSKA 278
            S + +++SA  ++G    AV    R+ DL   P+  A   +LS  S A
Sbjct: 373 VS-WTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHA 420



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 32/225 (14%)

Query: 82  KQMHALIFKIGYD--SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           K++H+ I  I +D  SN  +  +L+  YA+CG       +F  + ++++V +N ++    
Sbjct: 55  KKLHSKIC-IDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYV 113

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----------CHAGFIDKGLQYFYL 188
           ++    +A+ +F+ M    I PD  T+  VL A             HA  +  GL     
Sbjct: 114 NNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVF 173

Query: 189 MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
           + N              ++ + G+ G L EA   ++ M      S + +L++ C  +G  
Sbjct: 174 VGN-------------GLISMYGKCGCLVEACRVLDQMPCRDVVS-WNSLVAGCARNGQF 219

Query: 249 EIAVRSAK--RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTL 291
           + A+   K   +L L P+   +  LL  V+    C D+   ++ +
Sbjct: 220 DDALEVCKEMELLGLKPDAGTMASLLPAVTNT--CLDNVSFVKEM 262


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 172/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +    +  +  ++ +  ISW+++I G+   G   +A+  F  +++    ID F +
Sbjct: 620 YVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVL 679

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+G     +  ++GKQM AL+ K+       V N LV MY  CG +++A K F+ M  
Sbjct: 680 SSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQL 739

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D++SW  ++ G   HG  ++AV +F +M +  I+PD   +L VLSAC H+G I +G + 
Sbjct: 740 KDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEEL 799

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  +     ++ PR EHY  +V LLGRAG L EA+  +++M   P   +++ LLS C+VH
Sbjct: 800 FSKLLETQGIK-PRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVH 858

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E+     K +L +   +PA YV++SN+      W++ G+ R L   +G++K+ G SW
Sbjct: 859 GDIELGKEVGKILLRIDGKNPANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSW 918

Query: 306 V 306
           V
Sbjct: 919 V 919



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 112/216 (51%), Gaps = 2/216 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C   L    V+ S+  RN +SW A+++G    G    +L  F+EM + GI  + FT 
Sbjct: 414 YCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPNEFTF 473

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++ + A G+++  ++G Q+H    KIG++  V V N LV MY+ CG IN+A KVF  M  
Sbjct: 474 STNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVG 533

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK--PDGTTFLVVLSACCHAGFIDKGL 183
           R L+SWN+++ G  H GY   A+  F  MQ+ +IK  PD  T   +L AC   G I  G 
Sbjct: 534 RSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGK 593

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
           Q    +       P  A    ++V L  + G L  A
Sbjct: 594 QIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSA 629



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 4/136 (2%)

Query: 92  GYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLF 151
           G   N+   N L+ MY  C     A KVF SM ER++VSW +L+ G   +G    ++ LF
Sbjct: 399 GSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLF 458

Query: 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLL 210
            +M +  I P+  TF   L AC     ++KGLQ + + ++    +     E   ++V + 
Sbjct: 459 TEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEM---MVEVGNSLVDMY 515

Query: 211 GRAGFLNEAESFINSM 226
            + G +NEAE     M
Sbjct: 516 SKCGRINEAEKVFRWM 531


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 171/301 (56%), Gaps = 8/301 (2%)

Query: 13  LDFQNVYSSVR------TRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTI 65
           +D  NV  +++       RN +SWNA++AG+      + AL+ F  M R+A +  +  T+
Sbjct: 185 MDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTL 244

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++     +S    GKQ+H    K+    N+ V   LV MY  CG ++ A  +F  M  
Sbjct: 245 SSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHT 304

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+V+WN+++ G A HG  +EA+ LFE+M+   ++P+  TF+VVL+AC H G  D G+Q 
Sbjct: 305 RDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQC 364

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+    +E PR +HY+ +V LL RAG L  A  FI SM   P PS Y  LL+AC+V+
Sbjct: 365 FEGMQELYGIE-PRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVY 423

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E A  +A ++++  P     YV L+N+    + WDD   +R  M +  + K PGYSW
Sbjct: 424 KNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSW 483

Query: 306 V 306
           +
Sbjct: 484 I 484



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 117/265 (44%), Gaps = 21/265 (7%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + +++S+  R+  SWN +++G    G+ E+A   F  M           + + V    ++
Sbjct: 100 RRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAM----------PVRNSVSWNAMV 149

Query: 76  SGFKEGKQM---HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           SGF     M              +  +   +V  Y   G +  A K F +M  R+LVSWN
Sbjct: 150 SGFACSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWN 209

Query: 133 SLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMR 190
           +++ G   + ++ +A++LF  M ++  ++P+ +T   VL  C +   +  G Q + + M+
Sbjct: 210 AVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMK 269

Query: 191 NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREI 250
              S         T++V +  + G L+ A      M        + A++S    HG+ + 
Sbjct: 270 LLLSRNLTVG---TSLVSMYCKCGDLSSACILFGEM-HTRDVVAWNAMISGYAQHGDGKE 325

Query: 251 AVRSAKRVLD--LWPNDPAIYVLLS 273
           A+   +R+ D  + PN     V+L+
Sbjct: 326 AINLFERMKDEGVEPNWITFVVVLT 350



 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 37/66 (56%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C        ++  + TR+ ++WNA+I+G+   G G++A+  F  M+  G++ ++ T 
Sbjct: 286 YCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITF 345

Query: 66  TSIVGA 71
             ++ A
Sbjct: 346 VVVLTA 351



 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
           +V   N L+  +   G  + A ++F+SM  RD+ SWN+++ G +  G   EA  +F  M
Sbjct: 79  DVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAM 137


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 104/285 (36%), Positives = 172/285 (60%), Gaps = 5/285 (1%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R+ ISWN++I+G+   G  ++A+ C   M  +   +D+ T + ++ A   ++  + G +M
Sbjct: 651 RDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEM 710

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA   +   +S+V V++ LV MY+ CG I+ A+KVF SM +++  SWNS++ G A HG  
Sbjct: 711 HAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLG 770

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
           R+A+++FE+MQ++   PD  TF+ VLSAC HAG +++GL YF LM +   L  PR EHY+
Sbjct: 771 RKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELMEDYGIL--PRIEHYS 828

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR---EIAVRSAKRVLDL 261
            ++ LLGRAG L++ + ++  M   P   +++ +L ACQ   +R   ++   +++ +L+L
Sbjct: 829 CVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLEL 888

Query: 262 WPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            P +P  YVL S    A   W+D    R  M    ++K+ G SWV
Sbjct: 889 EPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWV 933



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 26/226 (11%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFTITSIVGAIGV 74
           +++Y  ++ RN ++ N +IAG      GE A + F   R  A +++D + +  ++ AI  
Sbjct: 333 KDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVV--LLSAIAE 390

Query: 75  IS----GFKEGKQMHALIFKIGYD-SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
            S    G ++G+++HA + + G+    + V N LV MYA CGAI+ A +VF  M+ RD +
Sbjct: 391 FSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRI 450

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY---- 185
           SWN+++     +GY   A+  +  M++  I P     +  LS+C   G +  G Q     
Sbjct: 451 SWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDA 510

Query: 186 ----FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
                YL   D S+         A+V + G  G ++E     NSMS
Sbjct: 511 VKWGLYL---DTSVS-------NALVKMYGECGRMSECWEIFNSMS 546



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 3/223 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +      V+  +  R++ISWN II      G  E A+  +  MRQ  I    F  
Sbjct: 428 YAKCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAA 487

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + +   +     G+Q+H    K G   +  V N LV MY  CG +++  ++F+SM  
Sbjct: 488 ISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSA 547

Query: 126 RDLVSWNSLL-LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            D+VSWNS++ +  +      E+VQ+F  M K+ + P+  TF+  L+A      ++ G Q
Sbjct: 548 HDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQ 607

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
              +M      E    ++  A++    ++G ++  E   + MS
Sbjct: 608 IHSVMLKHGVTEDNAVDN--ALMSCYAKSGDVDSCERLFSRMS 648



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 102/221 (46%), Gaps = 23/221 (10%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYFTITSIVGAIG 73
           + V+  +  RN +SW  +I+G    G  E A   F  M + G       FT  S++ A  
Sbjct: 120 RRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQ 179

Query: 74  VISGFKEG--KQMHALIFKIGYDSNVFVQNRLVFMYAIC--GAINDANKVFSSMDERDLV 129
                + G   Q+H L+ K  + SN  V N L+ MY  C  G    A +VF +   RDL+
Sbjct: 180 DSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLI 239

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQ----KTEIKPDGTTFLVVLSAC----CHAGFIDK 181
           +WN+L+   A  G +     LF  MQ      E++P   TF  +++A     C  G +D+
Sbjct: 240 TWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQ 299

Query: 182 GLQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAE 220
              +  ++++  S     ++ Y  +A+V    R G L+EA+
Sbjct: 300 --LFVRVLKSGCS-----SDLYVGSALVSAFARHGMLDEAK 333



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 40/202 (19%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        V+ S+  +N+ SWN++I+G+   G G +AL+ F EM+++G   D+ T 
Sbjct: 733 YSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTF 792

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A             HA + + G D    +++     Y I   I   + V      
Sbjct: 793 VSVLSACS-----------HAGLVERGLDYFELMED-----YGILPRIEHYSCVI----- 831

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC---CHAGFIDKG 182
            DL+            G + E  ++ E M++  +KP+   +  VL AC    H   ID G
Sbjct: 832 -DLL------------GRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLG 878

Query: 183 LQYFYLMRNDASLEPPRAEHYT 204
            +   ++     LEP    +Y 
Sbjct: 879 TEASRML---LELEPQNPVNYV 897



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           + +H  + K G   ++F+ N LV  YA    ++ A +VF  M  R+ VSW  L+ G    
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 142 GYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAG 177
           G   +A  LF  M  +    +P   TF  VL AC  +G
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSG 182


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 105/289 (36%), Positives = 171/289 (59%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ ++   N +SWN+IIA     G   + +  F++MR+ GI+ D  TI +++ A   +  
Sbjct: 194 LFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGV 253

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K  + +H L+F  G+ + + +   L+  YA  G ++ +  VF+ +   D V+W ++L G
Sbjct: 254 GKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAG 313

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG  REA++LFE M    ++PD  TF  +LSAC H+G +++G  YF +M     +E 
Sbjct: 314 YAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIE- 372

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           PR +HY+ +V LLGR G LN+A   I +M   P   V+ ALL AC+VHGN E+    A+ 
Sbjct: 373 PRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEH 432

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++++ P DP  Y++LSN+  A+  W DA  +R L+  RG+++ PGYS +
Sbjct: 433 LINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSI 481



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 6/178 (3%)

Query: 2   QILT-YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGID 59
           Q++T Y++   + D   ++  +  ++ +SWN++I+GF        +L  F  M+ +  + 
Sbjct: 79  QLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSR--CLHMSLTAFYTMKFEMSVK 136

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            +  TI S++ A         GK +H    K+G    V V N L+ MY   G +  A ++
Sbjct: 137 PNEVTILSMISACN--GALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRL 194

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           F ++ + + VSWNS++     +G +RE +  F +M++  I+ D  T L +L AC H G
Sbjct: 195 FEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLG 252



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           TY++         V++ V   ++++W A++AG+   G G +A+K F  M   G++ D+ T
Sbjct: 282 TYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVT 341

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            T ++ A        EGK    ++ ++ G +  V   + +V +   CG +NDA +V  +M
Sbjct: 342 FTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNM 401

Query: 124 D-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
             E +   W +LL  C  HG      ++ E +   E
Sbjct: 402 PMEPNAGVWGALLGACRVHGNIELGKEVAEHLINME 437



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 16/187 (8%)

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +++++ A+         +++HA +FK     + F+ ++LV  Y   G   DA K+F  M 
Sbjct: 42  VSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMP 101

Query: 125 ERDLVSWNSLLLG---CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            +DLVSWNSL+ G   C H   +      FE      +KP+  T L ++SAC   G +D 
Sbjct: 102 HKDLVSWNSLISGFSRCLHMSLTAFYTMKFEM----SVKPNEVTILSMISAC--NGALDA 155

Query: 182 GLQYF--YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           G +Y   + ++   +LE   A    +++ + G++G L  A     ++  +P    + +++
Sbjct: 156 G-KYIHGFGIKVGGTLEVKVA---NSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSII 210

Query: 240 SACQVHG 246
           +A   +G
Sbjct: 211 AAQVTNG 217


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 170/291 (58%), Gaps = 2/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +N + ++ +R+ +SW  II+ + +     +A+  F  M       +   +T ++G  G +
Sbjct: 505 RNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSL 564

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              K G+Q+H +  K+G DS + V N L+ MY  CG   D+ ++F  M+ERD+ +WN+++
Sbjct: 565 GASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCA-DSRRIFDLMEERDIFTWNTII 623

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG  REA+++++ M+   + P+  TF+ +L+AC HAG +D+G ++F  M  D  L
Sbjct: 624 TGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGL 683

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
             P  EHY  +V LLGR G +  AE FI  M   P   ++ ALL AC++H N EI  R+A
Sbjct: 684 -TPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAA 742

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++  + P++   YV+LSN+  +   W +  ++R +M  +G+ K+PG SW 
Sbjct: 743 EKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWT 793



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 98/199 (49%), Gaps = 6/199 (3%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN ISW  +IAG+   G  E+AL    E+ ++G+     ++TSI  A   I
Sbjct: 373 KELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNI 432

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G Q+H+L  K+G   N F  N L+ MY  C  +  A +VFS M  +D+VSWNS L
Sbjct: 433 VALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFL 492

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
                +    EA   F+ M    +  D  ++  ++SA  HA   ++ +  F  M  +  L
Sbjct: 493 AALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL 548

Query: 196 EPPRAEHYTAIVGLLGRAG 214
             P +   T ++G+ G  G
Sbjct: 549 --PNSPILTILLGVCGSLG 565



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 99/215 (46%), Gaps = 11/215 (5%)

Query: 13  LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           +D +N++  +  RN +SW  +I+G+  + +  +A   F +M + G+  D     S + A+
Sbjct: 175 VDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAV 234

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND-ANKVFSSMDERDLVSW 131
             +      + +  L  K G++ +V +   ++ +Y+   ++ D A K F SM ER+  +W
Sbjct: 235 KGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTW 294

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
           ++++   +H G    A+ ++E+     I    T  +  L+ C   G ID     F     
Sbjct: 295 STMIAALSHGGRIDAAIAVYERDPVKSIACR-TALITGLAQC---GRIDDARILF----- 345

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
              +  P    + A++    + G +NEA+   + M
Sbjct: 346 -EQIPEPIVVSWNALITGYMQNGMVNEAKELFDKM 379



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 88/187 (47%), Gaps = 13/187 (6%)

Query: 5   TYSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
            YSR  S LD     + S+  RN+ +W+ +IA   + G  + A+  +          +  
Sbjct: 268 VYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVY----------ERD 317

Query: 64  TITSIVGAIGVISGFKEGKQMH--ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            + SI     +I+G  +  ++    ++F+   +  V   N L+  Y   G +N+A ++F 
Sbjct: 318 PVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFD 377

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M  R+ +SW  ++ G A +G S EA+ L +++ ++ + P  ++   +  AC +   ++ 
Sbjct: 378 KMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALET 437

Query: 182 GLQYFYL 188
           G Q   L
Sbjct: 438 GTQVHSL 444



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 12/146 (8%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+ ++  R+ I+WN++I+ +C+ G  + A   +  +    +           GAI ++
Sbjct: 54  REVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR---------TGAI-LL 103

Query: 76  SGF-KEGKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           SG+ + G+ + A  +F    + N    N ++  Y   G I  A ++F +M  RD+ SWNS
Sbjct: 104 SGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNS 163

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEI 159
           +L G  H     +A  LFE+M +  +
Sbjct: 164 MLTGYCHSLQMVDARNLFEKMPERNL 189



 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 5/171 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C  + D + ++  +  R+  +WN II G+   G G +A+K +  M  AG+  + 
Sbjct: 593 ISMYFKCGCA-DSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNE 651

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T   ++ A        EG K   ++    G          +V +    G +  A +   
Sbjct: 652 VTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIY 711

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            M  E D V W++LL  C  H  +    +  E++ +  I+P      V+LS
Sbjct: 712 DMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFR--IEPSNAGNYVMLS 760



 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 17/175 (9%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G + +A +VF +M  RD+++WNS++    H+G    A  L++ +    ++    T  ++L
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR----TGAILL 103

Query: 171 SACCHAGFIDKGLQYF--YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
           S     G + +  + F   L RN  +        + A++    + G +  A    ++M  
Sbjct: 104 SGYGRLGRVLEARRVFDGMLERNTVA--------WNAMISCYVQNGDITMARRLFDAMPS 155

Query: 229 NPGPSVYKALLSAC---QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATD 280
               S    L   C   Q+   R +  +  +R L  W    + Y  + N  KA D
Sbjct: 156 RDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWD 210


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 171/302 (56%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYS-SVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS+        NV+      RN +S+  +I G+      E+ L  F E+R+ GI+ + FT
Sbjct: 252 YSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFT 311

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +S++ A    +  ++G Q+HA + KI +D + FV + LV MY  CG +  A + F  + 
Sbjct: 312 FSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIG 371

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +   ++WNSL+     HG  ++A++ FE+M    +KP+  TF+ +L+ C HAG +++GL 
Sbjct: 372 DPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLD 431

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YFY M     + P   EHY+ ++ LLGRAG L EA+ FIN M   P    + + L AC++
Sbjct: 432 YFYSMDKTYGVVPGE-EHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRI 490

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HG++E+   +A++++ L P +    VLLSN+      W+D   +R  M +  ++K PGYS
Sbjct: 491 HGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYS 550

Query: 305 WV 306
           WV
Sbjct: 551 WV 552



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 146/277 (52%), Gaps = 8/277 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C +  D   V+  +  ++++SW A+I G+  +G  E+AL  F +M    + ID   +
Sbjct: 151 YSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVL 210

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S +GA G +   K G+ +H+ + K+G++S++FV N L  MY+  G +  A+ VF    E
Sbjct: 211 CSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSE 270

Query: 126 -RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            R++VS+  L+ G        + + +F ++++  I+P+  TF  ++ AC +   +++G Q
Sbjct: 271 CRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQ 330

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            +  +M+ +   +P  +   + +V + G+ G L  A    + +  +P    + +L+S   
Sbjct: 331 LHAQVMKINFDEDPFVS---SILVDMYGKCGLLEHAIQAFDEIG-DPTEIAWNSLVSVFG 386

Query: 244 VHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
            HG  + A++  +R++D  + PN      LL+  S A
Sbjct: 387 QHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHA 423



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        ++ ++  RN +SW A+I+G        +A++ F  MR  G     F  
Sbjct: 50  YSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAF 109

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S + A   +   + GKQMH L  K G  S +FV + L  MY+ CGA+ DA KVF  M  
Sbjct: 110 SSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPC 169

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +D VSW +++ G +  G   EA+  F++M   E+  D       L AC
Sbjct: 170 KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGAC 217



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + GKQ+HAL+   GY    F+ N LV MY+ CG ++ A K+F +M +R+LVSW +++ G
Sbjct: 21  LRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISG 80

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL 188
            + +    EA++ F  M+     P    F   + AC   G I+ G Q   L
Sbjct: 81  LSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCL 131


>gi|222632633|gb|EEE64765.1| hypothetical protein OsJ_19621 [Oryza sativa Japonica Group]
          Length = 656

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 169/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +CD   +   V+  +  +N +SW AI+  +      E AL+ F +M   G+  + FT 
Sbjct: 228 YGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTY 287

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              + +   ++  K G  + A   K G+   + V N L+ MY+  G++ DA +VF SM  
Sbjct: 288 AVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPC 347

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWNS+++G AHHG +REA++ F  M   E  P   TF+ VLSAC   G +D+G  Y
Sbjct: 348 RDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYY 407

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             +M  +  ++P + EHYT +VGLL R G L+EAE FI S         +++LLS+CQV+
Sbjct: 408 LNIMMKEVGVKPGK-EHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVY 466

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +  R A+++  L P D   YVLLSN+    + WD    +R LM   G+RK+PG SW
Sbjct: 467 RNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSW 526

Query: 306 V 306
           +
Sbjct: 527 I 527



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 72/143 (50%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           +A++  +C     ++A+K   +  +    +    I  ++G          G Q+H    K
Sbjct: 152 SAVLHMYCQCAHMDEAVKYSKKHGEKCRAMGSCVICRVLGHCASTKEVVLGSQVHTQALK 211

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
              + NV+V + LV MY  C   ++AN+VF  + E+++VSW +++     +    +A+QL
Sbjct: 212 RRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQL 271

Query: 151 FEQMQKTEIKPDGTTFLVVLSAC 173
           F  M+   ++P+  T+ V L++C
Sbjct: 272 FLDMEMEGVRPNEFTYAVALNSC 294



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 3/158 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C      + V+ ++ +RN +S N +++G+ + G    AL   + +R A   ++ 
Sbjct: 57  IALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASSGRHRDAL---ALLRVADFGLNE 113

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           + ++S V A   +  +  G+Q H    K G   + +V + ++ MY  C  +++A K    
Sbjct: 114 YVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKYSKK 173

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
             E+     + ++     H  S + V L  Q+    +K
Sbjct: 174 HGEKCRAMGSCVICRVLGHCASTKEVVLGSQVHTQALK 211



 Score = 41.6 bits (96), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK +HA + +     +V   N L+ +Y  CG +  A +VF +M  R+ VS N L+ G A 
Sbjct: 35  GKAVHARVVRAA-RFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYAS 93

Query: 141 HGYSREAVQLF 151
            G  R+A+ L 
Sbjct: 94  SGRHRDALALL 104


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/280 (37%), Positives = 161/280 (57%), Gaps = 2/280 (0%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SWN+II+G+      E A   F+ M + GI  D FT  +++     ++    GKQ+HA 
Sbjct: 569 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 628

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           + K    S+V++ + LV MY+ CG ++D+  +F     RD V+WN+++ G AHHG   EA
Sbjct: 629 VIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEA 688

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           +QLFE+M    IKP+  TF+ +L AC H G IDKGL+YFY+M+ D  L+ P+  HY+ +V
Sbjct: 689 IQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLD-PQLPHYSNMV 747

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR-EIAVRSAKRVLDLWPNDP 266
            +LG++G +  A   I  M       +++ LL  C +H N  E+A  +   +L L P D 
Sbjct: 748 DILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDS 807

Query: 267 AIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + Y LLSNV      W+   D+R  M    ++K+PG SWV
Sbjct: 808 SAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWV 847



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 90/168 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++CD+  D Q ++ +    N+ S+NA+I G+     G +AL  F  +  +G+  D  ++
Sbjct: 326 YAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISL 385

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + +  A  ++ G  EG Q++ L  K     +V V N  + MY  C A+ +A +VF  M  
Sbjct: 386 SGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR 445

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           RD VSWN+++     +G   E + LF  M ++ I+PD  TF  +L AC
Sbjct: 446 RDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKAC 493



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 98/211 (46%), Gaps = 34/211 (16%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +  +   V+  +R R+ +SWNAIIA     G G + L  F  M ++ I+ D FT 
Sbjct: 427 YGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTF 486

Query: 66  TSIVGA-IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS--- 121
            SI+ A  G   G+  G ++H+ I K G  SN  V   L+ MY+ CG I +A K+ S   
Sbjct: 487 GSILKACTGGSLGY--GMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFF 544

Query: 122 -------SMDERD----------LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164
                  +M+E +           VSWNS++ G      S +A  LF +M +  I PD  
Sbjct: 545 QRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKF 604

Query: 165 TFLVVLSACC-----------HAGFIDKGLQ 184
           T+  VL  C            HA  I K LQ
Sbjct: 605 TYATVLDTCANLASAGLGKQIHAQVIKKELQ 635



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 90/168 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+ +      + ++ +  R+ +SWN++++G+   G   ++++ F +M + GI+ D  T 
Sbjct: 124 YSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTF 183

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             I+     +     G Q+H ++ ++G D++V   + L+ MYA      ++ +VF  + E
Sbjct: 184 AIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPE 243

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           ++ VSW++++ GC  +     A++ F++MQK       + +  VL +C
Sbjct: 244 KNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSC 291



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 117/243 (48%), Gaps = 5/243 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++    ++   V+  +  +N +SW+AIIAG         ALK F EM++    +     
Sbjct: 225 YAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIY 284

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   +S  + G Q+HA   K  + ++  V+   + MYA C  + DA  +F + + 
Sbjct: 285 ASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSEN 344

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            +  S+N+++ G +   +  +A+ LF ++  + +  D  +   V  AC     + +GLQ 
Sbjct: 345 LNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQI 404

Query: 186 FYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + L +++  SL+   A    A + + G+   L EA    + M R    S + A+++A + 
Sbjct: 405 YGLAIKSSLSLDVCVA---NAAIDMYGKCQALAEAFRVFDEMRRRDAVS-WNAIIAAHEQ 460

Query: 245 HGN 247
           +G 
Sbjct: 461 NGK 463



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           +V   N+++  Y+    +  AN  F+ M  RD+VSWNS+L G   +G S +++++F  M 
Sbjct: 113 DVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMG 172

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +  I+ DG TF ++L  C        G+Q
Sbjct: 173 REGIEFDGRTFAIILKVCSFLEDTSLGMQ 201



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 5/159 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D + ++     R+ ++WNA+I G+ + G GE+A++ F  M    I  ++ T 
Sbjct: 648 YSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTF 707

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            SI+ A   +    +G +   ++ +  G D  +   + +V +    G +  A ++   M 
Sbjct: 708 ISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMP 767

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
            E D V W +LL  C  H   R  V++ E+     ++ D
Sbjct: 768 FEADDVIWRTLLGVCTIH---RNNVEVAEEATAALLRLD 803


>gi|147767158|emb|CAN71514.1| hypothetical protein VITISV_021786 [Vitis vinifera]
          Length = 690

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 177/304 (58%), Gaps = 10/304 (3%)

Query: 12  SLDFQNVYSSVRTRNQISW-----NAIIAGFCNLGSGEQA---LKCFSEMRQAGIDIDYF 63
           SL+   ++ ++ ++N ++      NA+++ F   G  EQA   L+ F E+  + +  + +
Sbjct: 386 SLEIVKMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQGLEQFYELLMSTLKPNAY 445

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T++ ++     IS  + GKQ+H  I + G  S   + N L+ MYA CG ++ + ++F+ M
Sbjct: 446 TLSIVLSICASISALRHGKQIHGYILRSGVFSVTSLGNALITMYAKCGDLDWSLRIFNVM 505

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKG 182
           + RD+VSWN+++   A HG  +EAV  F+ MQ +  +KPD  TF  VLSAC HAG +D G
Sbjct: 506 NGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGGVKPDQATFTAVLSACSHAGLVDDG 565

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + F  M ND   EP  A+H + IV LLGRAG+L EAE  INS       S++  L SAC
Sbjct: 566 TRIFNSMVNDYGFEPG-ADHLSCIVDLLGRAGYLEEAERLINSKHLKIVSSIWWTLFSAC 624

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
             HGN  +    A  +L++  NDPA+YVLLSN+  A   W++A + R LM    + K+PG
Sbjct: 625 AAHGNLRLGRIVAGFLLEIEQNDPAVYVLLSNIYAAAGQWEEAANTRDLMQKTRVAKQPG 684

Query: 303 YSWV 306
            SW+
Sbjct: 685 CSWI 688



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 3/151 (1%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           + WNAII G       E AL  F EM Q G+  D +T  S++ ++  +     G+++H L
Sbjct: 157 VVWNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVL-SLCSLELLDFGREVHTL 215

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDLVSWNSLLLGCAHHGYSR 145
           + K G+     V N L+ MY   G + DA +VF   +    D +++N ++ G A  G   
Sbjct: 216 VIKTGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDE 275

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
           EA+ +F++MQ+  ++P   TF+ V+S+C  A
Sbjct: 276 EALIMFKEMQEACLRPTELTFVSVMSSCSSA 306



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 22/158 (13%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F+   S+V   + I++N +I G  ++G  E+AL  F EM++A +     T  S++ +   
Sbjct: 248 FEEAESTVH--DDITFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSC-- 303

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
            S  +   Q+HA   K+G+++   V N  + MY+ CG ++  + VF  +           
Sbjct: 304 -SSARVSHQVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLG---------- 352

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
                   + R A+  F QMQ+  I+PD  T   +L++
Sbjct: 353 -------NFYRLAILAFLQMQRAGIEPDEFTIGSLLAS 383



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 81/195 (41%), Gaps = 34/195 (17%)

Query: 13  LDFQNVYSSVRTRNQ--ISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIV 69
           +++ N+  + +   +  I  N ++A          +++ F ++  +  +  D+FT++S +
Sbjct: 7   MEYINIVKTTKNAAEQLIKINQLLAELTRSHHNSASVQLFVQIHSSNYLKPDHFTLSSTL 66

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
            A   +     G Q+HA   + G  +   V N L+  YA    +    +VF+ ++  D+ 
Sbjct: 67  TACANLRYAASGNQLHAYSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQRVFNEIENPDVY 126

Query: 130 SWNSLL-------------------------------LGCAHHGYSREAVQLFEQMQKTE 158
           SW +LL                                GCA + ++  A+ LF +M +  
Sbjct: 127 SWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREMHQLG 186

Query: 159 IKPDGTTFLVVLSAC 173
           ++ D  TF  VLS C
Sbjct: 187 VRHDKYTFASVLSLC 201



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 76/147 (51%), Gaps = 5/147 (3%)

Query: 3   ILTYSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDI 60
           I  Y++C   LD+   +++ +  R+ +SWNA+I+ +   G G++A+  F  M+ + G+  
Sbjct: 486 ITMYAKC-GDLDWSLRIFNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGGVKP 544

Query: 61  DYFTITSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           D  T T+++ A        +G ++ ++++   G++      + +V +    G + +A ++
Sbjct: 545 DQATFTAVLSACSHAGLVDDGTRIFNSMVNDYGFEPGADHLSCIVDLLGRAGYLEEAERL 604

Query: 120 FSSMDERDLVS-WNSLLLGCAHHGYSR 145
            +S   + + S W +L   CA HG  R
Sbjct: 605 INSKHLKIVSSIWWTLFSACAAHGNLR 631


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 170/291 (58%), Gaps = 2/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +N + ++ +R+ +SW  II+ + +     +A+  F  M       +   +T ++G  G +
Sbjct: 505 RNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSL 564

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              K G+Q+H +  K+G DS + V N L+ MY  CG   D+ ++F  M+ERD+ +WN+++
Sbjct: 565 GASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCA-DSRRIFDLMEERDIFTWNTII 623

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG  REA+++++ M+   + P+  TF+ +L+AC HAG +D+G ++F  M  D  L
Sbjct: 624 TGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGL 683

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
             P  EHY  +V LLGR G +  AE FI  M   P   ++ ALL AC++H N EI  R+A
Sbjct: 684 -TPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAA 742

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++  + P++   YV+LSN+  +   W +  ++R +M  +G+ K+PG SW 
Sbjct: 743 EKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWT 793



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 98/199 (49%), Gaps = 6/199 (3%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN ISW  +IAG+   G  E+AL    E+ ++G+     ++TSI  A   I
Sbjct: 373 KELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNI 432

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G Q+H+L  K+G   N F  N L+ MY  C  +  A +VFS M  +D+VSWNS L
Sbjct: 433 VALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFL 492

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
                +    EA   F+ M    +  D  ++  ++SA  HA   ++ +  F  M  +  L
Sbjct: 493 AALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL 548

Query: 196 EPPRAEHYTAIVGLLGRAG 214
             P +   T ++G+ G  G
Sbjct: 549 --PNSPILTILLGVCGSLG 565



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 99/215 (46%), Gaps = 11/215 (5%)

Query: 13  LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           +D +N++  +  RN +SW  +I+G+  + +  +A   F +M + G+  D     S + A+
Sbjct: 175 VDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAV 234

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND-ANKVFSSMDERDLVSW 131
             +      + +  L  K G++ +V +   ++ +Y+   ++ D A K F SM ER+  +W
Sbjct: 235 KGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTW 294

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
           ++++   +H G    A+ ++E+     I    T  +  L+ C   G ID     F     
Sbjct: 295 STMIAALSHGGRIDAAIAVYERDPVKSIACR-TALITGLAQC---GRIDDARILF----- 345

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
              +  P    + A++    + G +NEA+   + M
Sbjct: 346 -EQIPEPIVVSWNALITGYMQNGMVNEAKELFDKM 379



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 88/187 (47%), Gaps = 13/187 (6%)

Query: 5   TYSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
            YSR  S LD     + S+  RN+ +W+ +IA   + G  + A+  +          +  
Sbjct: 268 VYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVY----------ERD 317

Query: 64  TITSIVGAIGVISGFKEGKQMH--ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            + SI     +I+G  +  ++    ++F+   +  V   N L+  Y   G +N+A ++F 
Sbjct: 318 PVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFD 377

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M  R+ +SW  ++ G A +G S EA+ L +++ ++ + P  ++   +  AC +   ++ 
Sbjct: 378 KMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALET 437

Query: 182 GLQYFYL 188
           G Q   L
Sbjct: 438 GTQVHSL 444



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 12/146 (8%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+ ++  R+ I+WN++I+ +C+ G  + A   +  +    +           GAI ++
Sbjct: 54  REVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR---------TGAI-LL 103

Query: 76  SGF-KEGKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           SG+ + G+ + A  +F    + N    N ++  Y   G I  A ++F +M  RD+ SWNS
Sbjct: 104 SGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNS 163

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEI 159
           +L G  H     +A  LFE+M +  +
Sbjct: 164 MLTGYCHSLQMVDARNLFEKMPERNL 189



 Score = 44.3 bits (103), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 5/171 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C  + D + ++  +  R+  +WN II G+   G G +A+K +  M  AG+  + 
Sbjct: 593 ISMYFKCGCA-DSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNE 651

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T   ++ A        EG K   ++    G          +V +    G +  A +   
Sbjct: 652 VTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIY 711

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            M  E D V W++LL  C  H  +    +  E++ +  I+P      V+LS
Sbjct: 712 DMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFR--IEPSNAGNYVMLS 760



 Score = 37.7 bits (86), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 17/175 (9%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G + +A +VF +M  RD+++WNS++    H+G    A  L++ +    ++    T  ++L
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR----TGAILL 103

Query: 171 SACCHAGFIDKGLQYF--YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
           S     G + +  + F   L RN  +        + A++    + G +  A    ++M  
Sbjct: 104 SGYGRLGRVLEARRVFDGMLERNTVA--------WNAMISCYVQNGDITMARRLFDAMPS 155

Query: 229 NPGPSVYKALLSAC---QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATD 280
               S    L   C   Q+   R +  +  +R L  W    + Y  + N  KA D
Sbjct: 156 RDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWD 210


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 180/310 (58%), Gaps = 7/310 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C    D   ++  +R ++  SWN+I++     G  +  L+    M  AGI  D 
Sbjct: 279 IDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDL 338

Query: 63  FTITSIVGAIGVISGFKEGKQMHA--LIFKIGYDS----NVFVQNRLVFMYAICGAINDA 116
            T+T+++ A   ++    G+++H   ++  +G D     +V ++N ++ MYA CG++ DA
Sbjct: 339 VTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDA 398

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
           + VF  M  +D+ SWN +++G   HGY  EA+++F +M + ++KPD  TF+ VLSAC HA
Sbjct: 399 HLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHA 458

Query: 177 GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYK 236
           GF+ +G  +   M++   +  P  EHYT ++ +LGRAG L+EA     +M     P V++
Sbjct: 459 GFVSQGRNFLVQMKSKYDVA-PTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWR 517

Query: 237 ALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
           ALL+AC++H +  +A  +A+RV +L P     YVL+SNV  A   +++  ++R  M  + 
Sbjct: 518 ALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQN 577

Query: 297 IRKKPGYSWV 306
           +RK PG SW+
Sbjct: 578 VRKTPGCSWI 587



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 123/269 (45%), Gaps = 7/269 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q  +  +  R+ + WNA++ G+  +G  E  L+ F  M    +    FT+T  +    V+
Sbjct: 191 QVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVM 250

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+ +H    K+GYDS V V N L+ MY  C  I DA ++F  M E+D+ SWNS++
Sbjct: 251 GDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIV 310

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
                 G     ++L ++M    I+PD  T   VL AC H   +  G + + Y++ +   
Sbjct: 311 SVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLG 370

Query: 195 LEPPRAEHY---TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
            +    +      A++ +  + G + +A      MS N   + +  ++    +HG    A
Sbjct: 371 KDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMS-NKDVASWNIMIMGYGMHGYGNEA 429

Query: 252 VRSAKRV--LDLWPNDPAIYVLLSNVSKA 278
           +    R+  + L P++     +LS  S A
Sbjct: 430 LEMFSRMCEVQLKPDEVTFVGVLSACSHA 458



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N  ++NAII+GF   G  E+  + + +MR  G+  D FT      AI       E K++H
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPC---AIKACLDVLEIKKIH 159

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
            L+FK G + +VF+ + LV  Y   G +  A   F  +  RD+V WN+++ G A  G   
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFE 219

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             ++ F +M    + P   T    LS     G ++ G
Sbjct: 220 MVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNG 256


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 109/294 (37%), Positives = 169/294 (57%), Gaps = 4/294 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGV 74
           + V++ +  +N +SW  +I G+   G  E ALK F EM +  G   +  T  +++GA   
Sbjct: 213 RKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSD 272

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS--MDERDLVSWN 132
           ++G  EG+Q+H LI K  Y    FV + L+ MY+ CG ++ A K+F    + +RDLV WN
Sbjct: 273 MAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWN 332

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
            ++   AHHG   EA++LFE MQ    KP+  +++ +LSAC HAG +D+GL YF  +  D
Sbjct: 333 GMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRD 392

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            S++  R +H+  +V L GRAG L EA  FI  +      S++  LL+ C  HG+ EI  
Sbjct: 393 NSIQL-REDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHGDLEIGQ 451

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +AK +    P +   Y+LLSN+  +   W +A  +R  M  +G++K+PG SW+
Sbjct: 452 LAAKELEKEDPENAGTYLLLSNIYASGRKWREASRVRLKMKEKGLKKQPGCSWI 505



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 128/288 (44%), Gaps = 29/288 (10%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM----------------RQAGID-- 59
           V+  +  RN +SWNA+IA     G  E+A + F EM                R   +D  
Sbjct: 91  VFERMHERNMVSWNAVIAALVQCGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEA 150

Query: 60  ---IDYFTITSIVGAIGVISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAIN 114
               D     ++V    +++G+ +  ++     +F+   + N+   N ++  +   G + 
Sbjct: 151 RKVFDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELA 210

Query: 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT-EIKPDGTTFLVVLSAC 173
            A KVF+ M E+++VSW +++ G    G S  A+++F +M K    +P+  TF+ VL AC
Sbjct: 211 WARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGAC 270

Query: 174 CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS 233
                + +G Q   L+    S+   R    +A++ +  + G L+ A    + +  +    
Sbjct: 271 SDMAGLGEGQQVHLLI--SKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDL 328

Query: 234 V-YKALLSACQVH--GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
           V +  +++A   H  G   I +    + L   PND +   LLS  S A
Sbjct: 329 VLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHA 376



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 82/160 (51%), Gaps = 13/160 (8%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRT-RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I  Y +C   +D + ++  V   ++ ++W A+++G+  L   E+A + F  M        
Sbjct: 13  ISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLFEVM-------- 64

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALI--FKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
              + ++V    +I G+ + +++   I  F+  ++ N+   N ++     CG + +A + 
Sbjct: 65  --PVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEEARRR 122

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
           F  M +RD++SW ++++G A  G   EA ++F++M +  +
Sbjct: 123 FDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNV 162



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 17/177 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R     + + ++  +  +N +SWN +I G+      ++A++ F  M +  +     + 
Sbjct: 48  YVRLKRIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNM----VSW 103

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A+      +E ++    + K     +V     +V   A  G +++A KVF  M E
Sbjct: 104 NAVIAALVQCGRVEEARRRFDEMPK----RDVISWTTMVMGLARSGRVDEARKVFDRMPE 159

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           R++VSWN+++ G A +    EA  LFE+M +  +    T            GFI  G
Sbjct: 160 RNVVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMI---------TGFIQNG 207



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 15/167 (8%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R+ ++W A+I+G+   G    A + F  +           I  +V    ++SG+   K++
Sbjct: 4   RDVVTWTAVISGYIKCGLIVDARRLFDRVD---------AIKDVVTWTAMLSGYVRLKRI 54

Query: 85  HAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
                +F++    NV   N ++  Y     ++ A +VF  M ER++VSWN+++      G
Sbjct: 55  EEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCG 114

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
              EA + F++M K ++     ++  ++     +G +D+  + F  M
Sbjct: 115 RVEEARRRFDEMPKRDV----ISWTTMVMGLARSGRVDEARKVFDRM 157


>gi|356533529|ref|XP_003535316.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g56570-like [Glycine max]
          Length = 691

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 119/303 (39%), Positives = 170/303 (56%), Gaps = 8/303 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C  + + + ++S +  ++ I+WN +IAGF  L S E +L  FS M   G   D F+ 
Sbjct: 217 YCKCHCASEEKQLFSEMTHKDTITWNTLIAGFEALDSRE-SLCIFSXMVSEGFSPDCFSF 275

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS VGA   ++    G+Q+H +I   G D N+ + N L++MYA CG I D++ +FS M  
Sbjct: 276 TSAVGACANLAVLYCGQQLHGVIVHRGLD-NLEISNALIYMYAKCGNIADSHNIFSKMLX 334

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
              VSW S+++    HGY +EAV+LF ++ ++ IKPD   F+ VLSAC H G +D+G++Y
Sbjct: 335 HKFVSWTSMMIEYGDHGYGKEAVELFNEIVRSGIKPDKMVFMAVLSACSHTGLVDEGMRY 394

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM +   +  P  E Y  +V LLGRAG + EA   I SM  NP  S++ ALL AC+VH
Sbjct: 395 FILMTSYYDV-TPDIEVYECVVDLLGRAGRVKEAYQLIESMPFNPNESIWAALLGACKVH 453

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK--PGY 303
                 +  A R LD+ PN    Y LLSN+  A   W D      L   R I+ K   G 
Sbjct: 454 KQPCGQISRALRALDMKPNSAGTYALLSNIYAAEGNWADFASSTKL---RSIKNKSESGX 510

Query: 304 SWV 306
            W+
Sbjct: 511 EWI 513



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 120/273 (43%), Gaps = 33/273 (12%)

Query: 6   YSRCDSSLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y+ C + +D  + V+  + T+  ++    I G+ + G     L+ FS+M      +  F+
Sbjct: 115 YATCCNRMDHARMVFDDITTKTDVTRTTFITGYTHRGGAXGGLQVFSQMFLDEGALSLFS 174

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +    A   I     GKQ++A + K G++SN+ V N ++ MY  C   ++  ++FS M 
Sbjct: 175 FSIAAKACASIGSGILGKQVNAAVVKHGFESNLPVMNSILDMYCKCHCASEEKQLFSEMT 234

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC---------- 174
            +D ++WN+L+ G      SRE++ +F  M      PD  +F   + AC           
Sbjct: 235 HKDTITWNTLIAGFEALD-SRESLCIFSXMVSEGFSPDCFSFTSAVGACANLAVLYCGQQ 293

Query: 175 -HAGFIDKGLQ---------YFYL----MRNDASLEPPRAEH----YTAIVGLLGRAGFL 216
            H   + +GL          Y Y     + +  ++      H    +T+++   G  G+ 
Sbjct: 294 LHGVIVHRGLDNLEISNALIYMYAKCGNIADSHNIFSKMLXHKFVSWTSMMIEYGDHGYG 353

Query: 217 NEAESFINSMSRN---PGPSVYKALLSACQVHG 246
            EA    N + R+   P   V+ A+LSAC   G
Sbjct: 354 KEAVELFNEIVRSGIKPDKMVFMAVLSACSHTG 386



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 6/162 (3%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  RN ++W A+ +G  ++     A   F +M + G++   FTI+S + A   +  
Sbjct: 29  VFDXMSHRNVVTWTAMXSGNNHM----SAWSVFPQMLRDGVNPTAFTISSFLKACKGLKA 84

Query: 78  FKEGKQMHALIFKIGYD-SNVFVQNRLVFMYAI-CGAINDANKVFSSMDERDLVSWNSLL 135
              G+ +HAL FKIG   S++++ N L+ MYA  C  ++ A  VF  +  +  V+  + +
Sbjct: 85  LPCGQLVHALAFKIGVQGSSIYIDNALMDMYATCCNRMDHARMVFDDITTKTDVTRTTFI 144

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
            G  H G +   +Q+F QM   E      +F +   AC   G
Sbjct: 145 TGYTHRGGAXGGLQVFSQMFLDEGALSLFSFSIAAKACASIG 186



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 81/172 (47%), Gaps = 6/172 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C +  D  N++S +     +SW +++  + + G G++A++ F+E+ ++GI  D 
Sbjct: 313 IYMYAKCGNIADSHNIFSKMLXHKFVSWTSMMIEYGDHGYGKEAVELFNEIVRSGIKPDK 372

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYD--SNVFVQNRLVFMYAICGAINDANKVF 120
               +++ A        EG +   L+    YD   ++ V   +V +    G + +A ++ 
Sbjct: 373 MVFMAVLSACSHTGLVDEGMRYFILMTSY-YDVTPDIEVYECVVDLLGRAGRVKEAYQLI 431

Query: 121 SSMDERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            SM      S W +LL  C  H   +   Q+   ++  ++KP+      +LS
Sbjct: 432 ESMPFNPNESIWAALLGACKVH--KQPCGQISRALRALDMKPNSAGTYALLS 481


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 179/307 (58%), Gaps = 7/307 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D   ++  +R ++  SWN+I++     G  +  L+    M  AGI  D  T+
Sbjct: 282 YGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTV 341

Query: 66  TSIVGAIGVISGFKEGKQMHA--LIFKIGYD----SNVFVQNRLVFMYAICGAINDANKV 119
           T+++ A   ++    G+++H   ++  +G D     +V ++N ++ MYA CG++ DA+ V
Sbjct: 342 TTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLV 401

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M  +D+ SWN +++G   HGY  EA+++F +M + ++KPD  TF+ VLSAC HAGF+
Sbjct: 402 FERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFV 461

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
            +G  +   M++   +  P  EHYT ++ +LGRAG L+EA     +M     P V++ALL
Sbjct: 462 SQGRNFLVQMKSKYDV-APTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALL 520

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           +AC++H +  +A  +A+RV +L P     YVL+SNV  A   +++  ++R  M  + +RK
Sbjct: 521 AACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRK 580

Query: 300 KPGYSWV 306
            PG SW+
Sbjct: 581 TPGCSWI 587



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 124/269 (46%), Gaps = 7/269 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q  +  +  R+ + WNA++ G+  +G  E  L+ F  M    +    FT+T ++    V+
Sbjct: 191 QVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVM 250

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+ +H    K+GYDS V V N L+ MY  C  I DA ++F  M E+D+ SWNS++
Sbjct: 251 GDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIV 310

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
                 G     ++L ++M    I+PD  T   VL AC H   +  G + + Y++ +   
Sbjct: 311 SVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLG 370

Query: 195 LEPPRAEHY---TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
            +    +      A++ +  + G + +A      MS N   + +  ++    +HG    A
Sbjct: 371 KDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMS-NKDVASWNIMIMGYGMHGYGNEA 429

Query: 252 VRSAKRV--LDLWPNDPAIYVLLSNVSKA 278
           +    R+  + L P++     +LS  S A
Sbjct: 430 LEMFSRMCEVQLKPDEVTFVGVLSACSHA 458



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 4/178 (2%)

Query: 6   YSRCDSSLDFQNVYSS-VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS+C+      +++S      N  ++NAII+GF   G  E+  + + +MR  G+  D FT
Sbjct: 82  YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFT 141

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
                 AI       E K++H L+FK G + +VF+ + LV  Y   G +  A   F  + 
Sbjct: 142 FPC---AIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELP 198

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            RD+V WN+++ G A  G     ++ F +M    + P   T   VLS     G ++ G
Sbjct: 199 IRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNG 256



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 99/229 (43%), Gaps = 16/229 (6%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS-MDERDLVSWNSLLL 136
             +GK++H+ +   G+ ++      L+ MY+ C  +N A  +FS    E ++ ++N+++ 
Sbjct: 53  LSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIIS 112

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK--GLQYFYLMRNDAS 194
           G   +G+  E  + +++M+   + PD  TF   + AC     I K  GL + + +  D  
Sbjct: 113 GFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIKKIHGLLFKFGLELDVF 172

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           +        +A+V    + G +  A+     +       ++ A+++     G  E+ + +
Sbjct: 173 IG-------SALVNCYLKFGLMEHAQVAFEELPIR-DVVLWNAMVNGYAQIGQFEMVLET 224

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
            +R+     ND ++      V+     +   GD+       G   K GY
Sbjct: 225 FRRM-----NDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGY 268


>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
 gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
          Length = 546

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 182/308 (59%), Gaps = 3/308 (0%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           + I  Y +     + + ++     ++ ++WN +IAG+   G   QAL+ F EMR  G   
Sbjct: 215 VMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECP 274

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGY-DSNVFVQNRLVFMYAICGAINDANKV 119
           D  T+ S++ A   +   + G+++H  I ++   D +V + N LV MYA CG+I  A +V
Sbjct: 275 DEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSVLLGNALVDMYAKCGSIEIALQV 334

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGF 178
           F  M E+D+ +WNS++ G A HG++ E+++LF +MQ  + IKP+  TF+ V+ AC HAG 
Sbjct: 335 FKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVGVIVACSHAGN 394

Query: 179 IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
           +++G +YF LMR    +EP    H+  +V LLGRAG L+EA   I  M   P   +++ L
Sbjct: 395 VEEGRRYFKLMRERYDIEPNMI-HHGCMVDLLGRAGLLSEAFELIAKMEIEPNAIIWRTL 453

Query: 239 LSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
           L AC+VHGN E+   + +R+L L  ++   YVLLSN+  +   WD A ++R LM + G+R
Sbjct: 454 LGACRVHGNVELGRLANERLLKLRRDESGDYVLLSNIYASAGEWDGAEEVRKLMDDGGVR 513

Query: 299 KKPGYSWV 306
           K+ G S +
Sbjct: 514 KEAGRSLI 521



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 129/293 (44%), Gaps = 16/293 (5%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
             V++ +   +   WN ++ G     +  + +  +++M   G+  D FT + ++     +
Sbjct: 67  HQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRL 126

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              K G  +H  + K G++ N FV+N L++ ++ CG +  A  +F  + ER +VSW++L 
Sbjct: 127 EWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALT 186

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A  G    A Q+F++M   ++     ++ V+++     G ++     F     D + 
Sbjct: 187 AGYARRGELGVARQIFDEMPVKDL----VSWNVMITGYVKNGEMENARTLF-----DEAP 237

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESF--INSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           E       T I G + R       E F  + ++   P      +LLSAC   G+ ++  +
Sbjct: 238 EKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRK 297

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIR-TLMYNRGIRKKPGYSW 305
               + ++   D  + VLL N     D +   G I   L   + +R+K   +W
Sbjct: 298 LHCSISEMTRGD--LSVLLGNA--LVDMYAKCGSIEIALQVFKKMREKDVTTW 346



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYA--ICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           KQ+HA +   G++SN      L+F  A  I GAIN A++VF+ + E D+  WN+++ G +
Sbjct: 30  KQIHATLIIKGFNSNRAALRELIFAGAMTISGAINYAHQVFAQITEPDIFMWNTMMRGSS 89

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
                 + V L+ QM+   +KPD  TF  +L  C
Sbjct: 90  QSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGC 123



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 108/255 (42%), Gaps = 49/255 (19%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +S C   +  ++++  +  R+ +SW+A+ AG+   G    A + F EM         
Sbjct: 155 IYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFDEM--------- 205

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             +  +V    +I+G                    +V+N         G + +A  +F  
Sbjct: 206 -PVKDLVSWNVMITG--------------------YVKN---------GEMENARTLFDE 235

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             E+D+V+WN+++ G    G  R+A+++FE+M+     PD  T L +LSAC   G +  G
Sbjct: 236 APEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVG 295

Query: 183 LQYF----YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
            +       + R D S+         A+V +  + G +  A      M R    + + ++
Sbjct: 296 RKLHCSISEMTRGDLSVLLG-----NALVDMYAKCGSIEIALQVFKKM-REKDVTTWNSV 349

Query: 239 LSACQVHGNREIAVR 253
           +     HG+ E +++
Sbjct: 350 IGGLAFHGHAEESIK 364


>gi|224124454|ref|XP_002330027.1| predicted protein [Populus trichocarpa]
 gi|222871452|gb|EEF08583.1| predicted protein [Populus trichocarpa]
          Length = 502

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 122/301 (40%), Positives = 178/301 (59%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    + +  ++ +  ++ I+WN +IAG+    S E  L  FS+M   G   + FT 
Sbjct: 190 YCRCGCLSEAKEYFNEMSEKDLITWNTLIAGYERSDSIE-PLFIFSQMESEGFSPNCFTF 248

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS+V A    +  + G+Q+H  IF+ G D N+ + N L+ MYA CG I D+ K FS M  
Sbjct: 249 TSLVAACANAAALQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMSC 308

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            +LVSW S+++G   HGY +EAV+LF++M ++ I+PD   F+ VL AC HAG +D+GL+Y
Sbjct: 309 TNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAGLVDQGLRY 368

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M +D  ++P + E Y  +VGLLGRAG + EA   I SM      SV+ ALL AC+ H
Sbjct: 369 FNCMLDDYHIKPNQ-EIYGCVVGLLGRAGRVEEAYHLIRSMPFMADESVWGALLGACKAH 427

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
              ++   +AK+ L L PN    YV+LSN+  A   W +A  +R LM   G +K+ G SW
Sbjct: 428 NLSKLGKLAAKKALALKPNMVETYVMLSNIYAAEGKWGEAERMRKLMKRAGSKKEAGRSW 487

Query: 306 V 306
           +
Sbjct: 488 I 488



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 139/294 (47%), Gaps = 34/294 (11%)

Query: 6   YSRCDSSL-DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y+ C  ++ D   V+  ++ +N +SW  +IAG+ + G+G +A++ F E+   G +++  +
Sbjct: 88  YATCGVTMRDACVVFHDIKEKNVVSWTTLIAGYTHRGNGSRAVQVFREISLEGAELNPHS 147

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I+  V A   +     G+Q+H  + K G++S++ V N ++ MY  CG +++A + F+ M 
Sbjct: 148 ISIAVRACASVGSNILGRQIHTAVIKHGFESDLPVMNSILDMYCRCGCLSEAKEYFNEMS 207

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC----------- 173
           E+DL++WN+L+ G      S E + +F QM+     P+  TF  +++AC           
Sbjct: 208 EKDLITWNTLIAG-YERSDSIEPLFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQ 266

Query: 174 CHAGFIDKGL------------------QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF 215
            H G   +GL                        +N + +       +T+++   G  G+
Sbjct: 267 VHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGY 326

Query: 216 LNEAESFINSMSRN---PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDP 266
             EA    + M R+   P   V+ A+L AC   G  +  +R    +LD +   P
Sbjct: 327 GKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAGLVDQGLRYFNCMLDDYHIKP 380



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 107/210 (50%), Gaps = 11/210 (5%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           R+ ++  A+I+G+ +     QA   F +M +   +  + FTI+S++ A   ++    G  
Sbjct: 4   RDVVALTAMISGYTHCNEYTQAWSVFVDMVKNDNVPPNAFTISSVLKACKGMNSVFCGGL 63

Query: 84  MHALIFKIGY-DSNVFVQNRLVFMYAICG-AINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           +H L  K  + +  ++V N L+ MYA CG  + DA  VF  + E+++VSW +L+ G  H 
Sbjct: 64  VHGLAIKRRFVEGFIYVDNALMDMYATCGVTMRDACVVFHDIKEKNVVSWTTLIAGYTHR 123

Query: 142 GYSREAVQLFEQ--MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPP 198
           G    AVQ+F +  ++  E+ P   +  + + AC   G    G Q +  ++++    + P
Sbjct: 124 GNGSRAVQVFREISLEGAELNPHSIS--IAVRACASVGSNILGRQIHTAVIKHGFESDLP 181

Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
                 +I+ +  R G L+EA+ + N MS 
Sbjct: 182 V---MNSILDMYCRCGCLSEAKEYFNEMSE 208


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 169/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +CD   +   V+  +  +N +SW AI+  +      E AL+ F +M   G+  + FT 
Sbjct: 259 YGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTY 318

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              + +   ++  K G  + A   K G+   + V N L+ MY+  G++ DA +VF SM  
Sbjct: 319 AVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPC 378

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWNS+++G AHHG +REA++ F  M   E  P   TF+ VLSAC   G +D+G  Y
Sbjct: 379 RDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYY 438

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             +M  +  ++P + EHYT +VGLL R G L+EAE FI S         +++LLS+CQV+
Sbjct: 439 LNIMMKEVGVKPGK-EHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVY 497

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +  R A+++  L P D   YVLLSN+    + WD    +R LM   G+RK+PG SW
Sbjct: 498 RNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSW 557

Query: 306 V 306
           +
Sbjct: 558 I 558



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 87/177 (49%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    +   V+ +V + N  ++N++I GF + G  + +      M +     D+ + 
Sbjct: 158 YCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQWDHVSY 217

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++G          G Q+H    K   + NV+V + LV MY  C   ++AN+VF  + E
Sbjct: 218 VAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPE 277

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +++VSW +++     +    +A+QLF  M+   ++P+  T+ V L++C     +  G
Sbjct: 278 KNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNG 334



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 84/171 (49%), Gaps = 3/171 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C      + V+ ++ +RN +S N +++G+ + G    AL   + +R A   ++ 
Sbjct: 57  IALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASSGRHRDAL---ALLRVADFGLNE 113

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           + ++S V A   +  +  G+Q H    K G   + +V + ++ MY  C  +++A KVF +
Sbjct: 114 YVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDN 173

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +   ++ ++NS++ G    G    +  +   M +   + D  +++ VL  C
Sbjct: 174 VSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHC 224



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 16/197 (8%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK +HA + +     +V   N L+ +Y  CG +  A +VF +M  R+ VS N L+ G A 
Sbjct: 35  GKAVHARVVRAA-RFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYAS 93

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRA 200
            G  R+A+ L   ++  +   +       ++A  H    D G Q      +  +++   A
Sbjct: 94  SGRHRDALAL---LRVADFGLNEYVLSSAVAATAHVRSYDMGRQC-----HGYAIKAGLA 145

Query: 201 EH---YTAIVGLLGRAGFLNEA-ESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRS 254
           EH    +A++ +  +   ++EA + F N  S N     S+    L   Q+ G+  I VRS
Sbjct: 146 EHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSI-VRS 204

Query: 255 AKRVLDLWPNDPAIYVL 271
             R +  W +   + VL
Sbjct: 205 MVRNVGQWDHVSYVAVL 221


>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
 gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
          Length = 705

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 103/296 (34%), Positives = 171/296 (57%), Gaps = 2/296 (0%)

Query: 11  SSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVG 70
           S L+    Y  ++  N I+W+AII GF + G GE++L+ F +M+ A +  +  TI S++ 
Sbjct: 365 SQLEKMEAYPEMKP-NVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIASVLS 423

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
              +++    G++MH  + +   D NV V N L+ MY  CG+      VF  ++ RD +S
Sbjct: 424 ICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLENRDSIS 483

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
           WNS++ G   HG  ++A+  F  M K+  +PDG TF+  LSAC HAG + +G   F  MR
Sbjct: 484 WNSMIAGYGTHGLGKDALATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFSQMR 543

Query: 191 NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREI 250
            +  +E P  EHY  +V LLGRAG + EA + I  M   P   ++ +LL++C++H + ++
Sbjct: 544 QNFKIE-PEIEHYACMVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLNSCRMHKDTDL 602

Query: 251 AVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           A  +A ++ +L       ++LLSN+  A+  W+D+  +R     +G++K PG+SW+
Sbjct: 603 AEEAAAKISNLNSKITGSHMLLSNIFAASCRWEDSARVRISARAKGLKKVPGWSWI 658



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 5/218 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTR---NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           YSR     D + V+ S       N + WN+II      G   +AL+ + +MR  G+  D 
Sbjct: 80  YSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGVLGDG 139

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT   ++ A   +  F   K +H  + + G+ +++ V N L+ MYA    ++DA KVF  
Sbjct: 140 FTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDK 199

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  + +VSWN+++ G A++     A ++F QM+   ++P+  T+  +LS+    G +++ 
Sbjct: 200 MRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEET 259

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220
           +  F  MR       P AE    ++ +      LN  +
Sbjct: 260 MVLFCKMRMKGV--GPTAEMLAVVLSVCADLATLNSGQ 295



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 1/158 (0%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N ++W ++++     G  E+ +  F +MR  G+      +  ++     ++    G+ +H
Sbjct: 239 NPVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIH 298

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
             + K G++  +F +N L+ +Y   G + DA K+F  M  ++LVSWN+L+   A  G   
Sbjct: 299 GYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYD 358

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           +A++L  Q++K E  P+    ++  SA    GF  KGL
Sbjct: 359 KALELLSQLEKMEAYPEMKPNVITWSAII-CGFASKGL 395



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 3/105 (2%)

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD---ERDLVSWN 132
           +G +  KQ+H+     G   + FV  RLV +Y+  G ++DA KVF S       + + WN
Sbjct: 49  NGIQHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWN 108

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           S++    +HGY  EA+QL+ +M+   +  DG TF ++L A  + G
Sbjct: 109 SIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNLG 153



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 8/178 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S      V+  +  R+ ISWN++IAG+   G G+ AL  F+ M ++G   D 
Sbjct: 457 INMYTKCGSFKPGFMVFEKLENRDSISWNSMIAGYGTHGLGKDALATFNHMIKSGYRPDG 516

Query: 63  FTITSIVGAIGVISGFKEGKQMHALI---FKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            T  + + A        EG  + + +   FKI  +  +     +V +    G + +A+ +
Sbjct: 517 VTFIAALSACSHAGLVAEGHWLFSQMRQNFKI--EPEIEHYACMVDLLGRAGLVEEASNI 574

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV--VLSACC 174
              M  E +   W+SLL  C  H  +  A +   ++     K  G+  L+  + +A C
Sbjct: 575 IKGMPMEPNAYIWSSLLNSCRMHKDTDLAEEAAAKISNLNSKITGSHMLLSNIFAASC 632


>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
 gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
          Length = 756

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 113/282 (40%), Positives = 167/282 (59%), Gaps = 1/282 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +++  ++ RN +SWN+II+GF   G   +AL+ F  MR+     D+ T    + A   ++
Sbjct: 405 SIFRKMKRRNTVSWNSIISGFVQNGLFVEALQHFMLMRRDAKSADWCTYACCLSASANLA 464

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             + G+Q H+L+ + G+ S+    N L+  YA CG + +A +VF  M  +D+VSWN+L+ 
Sbjct: 465 TLQIGRQFHSLLVRTGFISDSSPGNALISAYAKCGRMLEARQVFDEMVVQDIVSWNALID 524

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A +G   E + +F +M+   ++PD  T +VVLSAC HAG ID+GL +F  M    SL+
Sbjct: 525 GYASNGNGSEVIAVFREMEANSVRPDEITLVVVLSACSHAGLIDEGLHFFNSMIKLYSLK 584

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
           P  AEHYT +V LLGRAG L EA   +  M   P   V+ ALL AC+VH N EIA  +A+
Sbjct: 585 PV-AEHYTCMVDLLGRAGRLREAFELVQGMQIQPNAGVWGALLGACRVHKNHEIAWLAAE 643

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
           ++ +L P   + YVLLSN+      WDDA  +R LM    +R
Sbjct: 644 KLFELEPCKASNYVLLSNICVEAGKWDDADKVRVLMKESILR 685



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 86/177 (48%), Gaps = 12/177 (6%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           N++  +  +N ISW  +++GF   G  ++A    S+M    +       T+++      +
Sbjct: 281 NLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMPSDNVGAK----TALMHGYLKSN 336

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
              + +Q+   I       +    N ++  Y  CG +++A  +F  M  +D++SWN+++ 
Sbjct: 337 LIDDARQLFDGIVV----RDAVCWNTMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIA 392

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           GCA  G  R+A  +F +M++     +  ++  ++S     G   + LQ+F LMR DA
Sbjct: 393 GCAQGGQIRKAASIFRKMKRR----NTVSWNSIISGFVQNGLFVEALQHFMLMRRDA 445



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 12/159 (7%)

Query: 95  SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
           S VF  N+ +   A  G +  A ++F  M  R++VS+N+++   AHHG   EA +LF++M
Sbjct: 9   SAVFRSNQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEM 68

Query: 155 QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEH-YTAIVGLLGRA 213
            +     +  ++  ++ AC   G ++     F  M       P R E+ +T +V    RA
Sbjct: 69  PRR----NPVSWNTMMVACSQHGRVEDARGLFDAM-------PARNEYSWTIMVSCYVRA 117

Query: 214 GFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
           G L  A   ++ M      + Y  ++S    +G  E A+
Sbjct: 118 GELTLARELLDRMPGEKCAACYNTMISGYAKNGRFEDAI 156



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 106/244 (43%), Gaps = 46/244 (18%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C   L+ + V+  +  ++ +SWNA+I G+ + G+G + +  F EM    +  D 
Sbjct: 492 ISAYAKCGRMLEARQVFDEMVVQDIVSWNALIDGYASNGNGSEVIAVFREMEANSVRPDE 551

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+  ++ A             HA +     D  +   N ++ +Y    ++    + ++ 
Sbjct: 552 ITLVVVLSACS-----------HAGLI----DEGLHFFNSMIKLY----SLKPVAEHYTC 592

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M +         LLG A  G  REA +L + MQ   I+P+   +  +L AC     + K 
Sbjct: 593 MVD---------LLGRA--GRLREAFELVQGMQ---IQPNAGVWGALLGAC----RVHKN 634

Query: 183 LQYFYLMRNDA-SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            +  +L       LEP +A +Y  +  +   AG  ++A+     M         +++L +
Sbjct: 635 HEIAWLAAEKLFELEPCKASNYVLLSNICVEAGKWDDADKVRVLMK--------ESILRS 686

Query: 242 CQVH 245
           C +H
Sbjct: 687 CNIH 690



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 87/211 (41%), Gaps = 17/211 (8%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN +SWN ++      G  E A   F  M  A  +  +  + S     G +
Sbjct: 62  RRLFDEMPRRNPVSWNTMMVACSQHGRVEDARGLFDAM-PARNEYSWTIMVSCYVRAGEL 120

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  +E      L+ ++  +      N ++  YA  G   DA  +   M   D+VSWNS+L
Sbjct: 121 TLARE------LLDRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVL 174

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G   +     +VQ F++M   ++     ++ ++L     AG +D    +F      + +
Sbjct: 175 GGLIRNEEISRSVQFFDEMPDKDL----VSWNLMLEGYVRAGDLDVASAFF------SRI 224

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
             P    +  +V    +AG + EA    + M
Sbjct: 225 PSPNVISWVNLVNGYCQAGRMGEARELFDRM 255



 Score = 43.9 bits (102), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 47/237 (19%), Positives = 95/237 (40%), Gaps = 34/237 (14%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGS------------GEQALKCFSEM-------- 53
           D + ++ ++  RN+ SW  +++ +   G             GE+   C++ M        
Sbjct: 91  DARGLFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRMPGEKCAACYNTMISGYAKNG 150

Query: 54  --RQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI--FKIGYDSNVFVQNRLVFMYAI 109
               A   +       IV    V+ G    +++   +  F    D ++   N ++  Y  
Sbjct: 151 RFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEMPDKDLVSWNLMLEGYVR 210

Query: 110 CGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV 169
            G ++ A+  FS +   +++SW +L+ G    G   EA +LF++M +  +      + V+
Sbjct: 211 AGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNV----VAWNVL 266

Query: 170 LSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           LS       ++     F  M    S+       +T +V    R+G L EA+  ++ M
Sbjct: 267 LSGYVQFSQVEAAYNLFIEMPEKNSIS------WTTMVSGFVRSGKLQEAKDVLSKM 317


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  213 bits (543), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 177/306 (57%), Gaps = 6/306 (1%)

Query: 6   YSRC---DSSLDFQNVYSSVRTRNQISWNAIIAGFC-NLGSGEQALKCFSEMRQAGIDID 61
           YS+C   D   D + V+  + + + + WN +I+G+  N    E+A+K F +M++ G   D
Sbjct: 285 YSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPD 344

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVF 120
             +   +  A   +S   +GKQ+H L  K    SN + V N L+ +Y   G + DA +VF
Sbjct: 345 DCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVF 404

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M E + VS+N ++ G A HG+  EA++L+++M  + I P+  TF+ +LSAC H G +D
Sbjct: 405 DRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVD 464

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +G +YF  M+    +EP  AEHY+ ++ LLGRAG L EAE FI++M   PG   + ALL 
Sbjct: 465 EGQKYFNTMKETFKIEP-EAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLG 523

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           AC+ H N  +A R+AK ++ + P     YV+L+N+      W++   +R  M  + IRKK
Sbjct: 524 ACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGKRIRKK 583

Query: 301 PGYSWV 306
           PG SW+
Sbjct: 584 PGCSWI 589



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 131/255 (51%), Gaps = 8/255 (3%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R+++SWN++I  +     G +AL  + EM   G  ID FT+ S++ A+  +     G+Q 
Sbjct: 203 RDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQF 262

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICG---AINDANKVFSSMDERDLVSWNSLLLGCA-H 140
           H  + K G+  N  V + L+  Y+ CG    ++D+ KVF  +   DLV WN+++ G + +
Sbjct: 263 HGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMN 322

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRA 200
             +S EAV+ F QMQ+   +PD  +F+ V SAC +     +G Q  + +   +++   R 
Sbjct: 323 EEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQ-IHGLAIKSNIPSNRI 381

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260
               A++ L  ++G L +A    + M      S +  ++     HG+   A+R  +R+LD
Sbjct: 382 SVNNALISLYYKSGNLLDARRVFDRMPELNAVS-FNCMIKGYAQHGHGTEALRLYQRMLD 440

Query: 261 --LWPNDPAIYVLLS 273
             + PN+     +LS
Sbjct: 441 SGIAPNNITFVAILS 455



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 11/165 (6%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA----IGVISGFKEG 81
           + +S+N +I+G+ +      A+  F  MR+ G ++D FT++ ++ A    + +I      
Sbjct: 104 DTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGLIAACCDRVDLI------ 157

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-RDLVSWNSLLLGCAH 140
           KQ+H      G+DS   V N  V  Y+  G + +A  VF  MD  RD VSWNS+++    
Sbjct: 158 KQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQ 217

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           H    +A+ L+++M     K D  T   VL+A      +  G Q+
Sbjct: 218 HKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQF 262



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 6/143 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +  + LD + V+  +   N +S+N +I G+   G G +AL+ +  M  +GI  + 
Sbjct: 388 ISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNN 447

Query: 63  FTITSIVGAIGVISGFKEGKQMHALI---FKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            T  +I+ A        EG++    +   FKI  ++  +  + ++ +    G + +A + 
Sbjct: 448 ITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHY--SCMIDLLGRAGKLEEAERF 505

Query: 120 FSSMDERD-LVSWNSLLLGCAHH 141
             +M  +   V+W +LL  C  H
Sbjct: 506 IDAMPYKPGSVAWAALLGACRKH 528



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 4/133 (3%)

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           + NVF  N +V  YA    I+ A ++F    + D VS+N+L+ G A    +  A+ LF++
Sbjct: 71  EPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKR 130

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA 213
           M++   + DG T   +++ACC    + K L  F +     S          A V    + 
Sbjct: 131 MRELGFEVDGFTLSGLIAACCDRVDLIKQLHCFAVSGGFDSYSSVN----NAFVTYYSKG 186

Query: 214 GFLNEAESFINSM 226
           G L EA S    M
Sbjct: 187 GLLREAVSVFYGM 199


>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g35030, mitochondrial; Flags: Precursor
 gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
 gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
 gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 172/292 (58%), Gaps = 4/292 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVIS 76
           ++  +  +N ISW  +I G+      E+AL  FS+M R   +  +  T  SI+ A   ++
Sbjct: 286 LFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLA 345

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS--MDERDLVSWNSL 134
           G  EG+Q+H LI K  +  N  V + L+ MY+  G +  A K+F +  + +RDL+SWNS+
Sbjct: 346 GLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSM 405

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           +   AHHG+ +EA++++ QM+K   KP   T+L +L AC HAG ++KG+++F  +  D S
Sbjct: 406 IAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDES 465

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           L P R EHYT +V L GRAG L +  +FIN        S Y A+LSAC VH    IA   
Sbjct: 466 L-PLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACNVHNEVSIAKEV 524

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            K+VL+   +D   YVL+SN+  A    ++A ++R  M  +G++K+PG SWV
Sbjct: 525 VKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWV 576



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 86/176 (48%), Gaps = 15/176 (8%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R+ ++W  +I G+  LG   +A + F  +          +  ++V    ++
Sbjct: 66  RKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVD---------SRKNVVTWTAMV 116

Query: 76  SGFKEGKQMH--ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           SG+   KQ+    ++F+   + NV   N ++  YA  G I+ A ++F  M ER++VSWNS
Sbjct: 117 SGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNS 176

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           ++      G   EA+ LFE+M + ++     ++  ++      G +D+  + F  M
Sbjct: 177 MVKALVQRGRIDEAMNLFERMPRRDV----VSWTAMVDGLAKNGKVDEARRLFDCM 228



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 89/190 (46%), Gaps = 15/190 (7%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           R D +L+   ++  +  RN +SWN+++      G  ++A+  F  M +     D  + T+
Sbjct: 155 RIDKALE---LFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRR----DVVSWTA 207

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           +V  +       E +++    F    + N+   N ++  YA    I++A+++F  M ERD
Sbjct: 208 MVDGLAKNGKVDEARRL----FDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERD 263

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
             SWN+++ G   +    +A  LF++M +  +     ++  +++        ++ L  F 
Sbjct: 264 FASWNTMITGFIRNREMNKACGLFDRMPEKNV----ISWTTMITGYVENKENEEALNVFS 319

Query: 188 LMRNDASLEP 197
            M  D S++P
Sbjct: 320 KMLRDGSVKP 329



 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 43/183 (23%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE------------------ 152
           G I +A K+F  + ERD+V+W  ++ G    G  REA +LF+                  
Sbjct: 60  GKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGY 119

Query: 153 ----QMQKTEI------KPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDASLEPPRA 200
               Q+   E+      + +  ++  ++     +G IDK L+ F  M  RN  S      
Sbjct: 120 LRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVS------ 173

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260
             + ++V  L + G ++EA +    M R    S + A++     +G     V  A+R+ D
Sbjct: 174 --WNSMVKALVQRGRIDEAMNLFERMPRRDVVS-WTAMVDGLAKNGK----VDEARRLFD 226

Query: 261 LWP 263
             P
Sbjct: 227 CMP 229


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 105/281 (37%), Positives = 167/281 (59%), Gaps = 1/281 (0%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           ++ +WNA+I G    G  E+A++ F +M++ G   +  TI+SI+ A       + GK++H
Sbjct: 279 DEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIH 338

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
             +F+     ++     L++MYA CG +N +  VF  M  +D+V+WN++++  A HG  +
Sbjct: 339 CYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGK 398

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205
           EA+ LF++M  + ++P+  TF  VLS C H+  +++G+Q F  M  D  +EP  A HY+ 
Sbjct: 399 EALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPD-ANHYSC 457

Query: 206 IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265
           +V +  RAG LNEA  FI  M   P  S + ALL+AC+V+ N E+A  SAK++ ++ PN+
Sbjct: 458 VVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNN 517

Query: 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           P  YV L N+      W +A  +R LM  RGI K PG SW+
Sbjct: 518 PGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWL 558



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 139/314 (44%), Gaps = 42/314 (13%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C      + V+  +  R+ +SW ++ + +   G   + +  F EM  +G+  + 
Sbjct: 120 IHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNP 179

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T++SI+ A   +   K GK++H    + G   N+FV + LV +YA C ++ +A  VF  
Sbjct: 180 MTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDL 239

Query: 123 MDERDLVSWNSLLL-----------------------------------GCAHHGYSREA 147
           M  RD+VSWN +L                                    GC  +G S EA
Sbjct: 240 MPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEA 299

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAI 206
           V++F +MQK   KP+  T   +L AC  +  +  G + + Y+ R+    +       TA+
Sbjct: 300 VEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRH---WKVGDLTSTTAL 356

Query: 207 VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL--DLWPN 264
           + +  + G LN + +  + M R      +  ++ A  +HGN + A+    ++L   + PN
Sbjct: 357 LYMYAKCGDLNLSRNVFDMMRRK-DVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPN 415

Query: 265 DPAIYVLLSNVSKA 278
                 +LS  S +
Sbjct: 416 SVTFTGVLSGCSHS 429



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++ ++   +  + + +I+     G   +A+K +S +++ GI  D     +   A  V 
Sbjct: 32  RQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVS 91

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                 K++H    + G  S+VFV N L+  Y  C  +  A +VF  +  RD+VSW SL 
Sbjct: 92  GDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLS 151

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
                 G+ R+ + +F +M  + +KP+  T   +L AC
Sbjct: 152 SCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPAC 189



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query: 102 RLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
           RL+ +    G  N A ++F ++ + D  + ++L+     HG S EA++++  +Q+  IKP
Sbjct: 17  RLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKP 76

Query: 162 DGTTFLVVLSACCHAG 177
           D   FL    AC  +G
Sbjct: 77  DMPVFLAAAKACAVSG 92


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 106/289 (36%), Positives = 171/289 (59%), Gaps = 1/289 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  R  +SW  +I G+  +G    AL  F EM+  GI+ D  +I +++ A   +
Sbjct: 197 RELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQL 256

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + GK +H    K G+     + N L+ MYA CG I++A  +F  + E+D++SW++++
Sbjct: 257 GALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMI 316

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A+HG   EA+QLFE+M K  + P+  TFL VL AC H G  D+GL+YF +M     +
Sbjct: 317 GGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHI 376

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           E P  EHY  ++ LLGR+G L +A   I+ M   P   ++ +LLS+C++H N +IAV + 
Sbjct: 377 E-PEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAV 435

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           K++++L P +   YVLL+N+      W+D  +IR L+ N+ I+K PG S
Sbjct: 436 KQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSS 484



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 34/199 (17%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID---IDYFTITSIVGAIGV 74
           ++  +   N  ++NAII  + +      A+  F +M     +    D FT   ++ +   
Sbjct: 64  LFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTG 123

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           I   + G Q+H L++K G D +   +N L+ MY   G + +A KVF  M  RD++SWNSL
Sbjct: 124 ILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSL 183

Query: 135 LLGCAH--------------------------HGYSR-----EAVQLFEQMQKTEIKPDG 163
           + G                              GY R     +A+ +F +MQ   I+PD 
Sbjct: 184 IFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDE 243

Query: 164 TTFLVVLSACCHAGFIDKG 182
            + + VL AC   G ++ G
Sbjct: 244 ISIIAVLPACAQLGALEVG 262


>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
          Length = 396

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 184/301 (61%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +  D + V+  +  R+ + W+A+IAG+   G   +AL+ F  M+ A I  +  T+
Sbjct: 51  YVKCGAVDDGRLVFDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTL 110

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +   + G+++ + +   G  SNV+V + L+ MY+ CG I  A ++F  + +
Sbjct: 111 VSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQ 170

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD V+WNS+++G A +G++ +A+ L+ +M++ E+KP+  TF+ +L+AC HAG ++ GL++
Sbjct: 171 RDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELGLEF 230

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  MR+D ++  P  EH+  IV L  R+G L +A  FI  M   P   ++  LLSA ++H
Sbjct: 231 FRSMRSDHNI-SPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIH 289

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+A  + K++L+L P++   YV+LSN+  +   W +A  +R LM ++ ++K   YSW
Sbjct: 290 LNVELAELAGKKLLELEPDNSGNYVILSNIYASASRWQEALKVRKLMKDKRVQKAAAYSW 349

Query: 306 V 306
           V
Sbjct: 350 V 350



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 111/220 (50%), Gaps = 5/220 (2%)

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           B  T+ +++     +   + G ++  L       SN+ V   ++ MY  CGA++D   VF
Sbjct: 5   BEITLATVLSICAKLGDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVF 64

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M  RD+V W++++ G A +G S EA++LFE M+  +IKP+  T + VLSAC   G ++
Sbjct: 65  DHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGSVE 124

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
            G +    + +   +        +A++G+  + G + +A    + + +    + + +++ 
Sbjct: 125 TGERIGSYVESRGLISNVYVA--SALLGMYSKCGNIIKARQIFDKLPQRDNVT-WNSMIM 181

Query: 241 ACQVHGNRE--IAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
              ++G  E  IA+ +  + +++ PN+     LL+  + A
Sbjct: 182 GLAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHA 221


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 174/305 (57%), Gaps = 3/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+ C        +++   T+N + W A++  +      + AL+ F +M + G   + 
Sbjct: 244 ITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQ 303

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T +  + A   +    +GK++H +  K+G +++VFV N LV MY  CG +N A  VF +
Sbjct: 304 STFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRN 363

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++E+D+VSWNS+++G A HG+   A+  F QM +  + P+  TF  +LSAC  +G + KG
Sbjct: 364 INEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKG 423

Query: 183 LQYF-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
             +F Y+ R  +++  P  +HY  +V +LGR G L+EAE  +  M       ++ ALLSA
Sbjct: 424 RCFFEYISRYKSNVLRP--QHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSA 481

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+VH N E+A R+AK +LDL PN  + YVLLSN+  +   W D   +R  M   G+ K+P
Sbjct: 482 CRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQP 541

Query: 302 GYSWV 306
           G SWV
Sbjct: 542 GSSWV 546



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 86/165 (52%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ ISW ++I G    G  E+AL  F +M ++G++  + T   ++ A      
Sbjct: 158 LFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVE 217

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F  G Q+H  + K+G   + F+   L+  YA C  I  A+K+F+    +++V W +LL  
Sbjct: 218 FNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTA 277

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              +   ++A+++F  M K    P+ +TF + L ACC    +DKG
Sbjct: 278 YVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKG 322



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 94/182 (51%), Gaps = 8/182 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+R D   D   ++  +  R+ +SWN++I G  + G+   A + F EM +  + I +
Sbjct: 50  IAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNV-ISW 108

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ +     G +       ++   +F   +  +V   N +V  Y   G + +  ++F  
Sbjct: 109 TTMVNGYLKFGRV-------ELAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEE 161

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD++SW S++ G   +G S EA+ +F++M ++ ++P  +TF  VLSAC +A   + G
Sbjct: 162 MPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLG 221

Query: 183 LQ 184
           +Q
Sbjct: 222 VQ 223



 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 81/202 (40%), Gaps = 48/202 (23%)

Query: 87  LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSRE 146
           LIF      N+ +  +++  Y     + DA K+F  M  RD+VSWNS++ GC   G    
Sbjct: 33  LIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDCGNLGM 92

Query: 147 AVQLFEQMQKTEIKPDGTTF-----------------------LVVLSACCHAGF----I 179
           A +LF++M +  +    T                         +   +A  H  F    +
Sbjct: 93  ATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMVHGYFENGRV 152

Query: 180 DKGLQYFYLMRNDASLEPPR-AEHYTAIVGLLGRAGFLNEAESFINSMSRN---PGPSVY 235
           ++G++ F  M       P R    +T+++G L   G   EA      M R+   P  S +
Sbjct: 153 EEGVRLFEEM-------PVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTF 205

Query: 236 KALLSAC----------QVHGN 247
             +LSAC          QVHG+
Sbjct: 206 ACVLSACANAVEFNLGVQVHGH 227


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 106/280 (37%), Positives = 161/280 (57%), Gaps = 2/280 (0%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SWN+II+G+      E A   F+ M + GI  D FT  +++     ++    GKQ+HA 
Sbjct: 527 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 586

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           + K    S+V++ + LV MY+ CG ++D+  +F     RD V+WN+++ G AHHG   EA
Sbjct: 587 VIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEA 646

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           +QLFE+M    IKP+  TF+ +L AC H G IDKGL+YFY+M+ D  L+ P+  HY+ +V
Sbjct: 647 IQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLD-PQLPHYSNMV 705

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR-EIAVRSAKRVLDLWPNDP 266
            +LG++G +  A   I  M       +++ LL  C +H N  E+A  +   +L L P D 
Sbjct: 706 DILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDS 765

Query: 267 AIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + Y LLSNV      W+   D+R  M    ++K+PG SWV
Sbjct: 766 SAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWV 805



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 90/168 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++CD+  D Q ++ +    N+ S+NA+I G+     G +AL  F  +  +G+  D  ++
Sbjct: 284 YAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISL 343

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + +  A  ++ G  EG Q++ L  K     +V V N  + MY  C A+ +A +VF  M  
Sbjct: 344 SGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR 403

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           RD VSWN+++     +G   E + LF  M ++ I+PD  TF  +L AC
Sbjct: 404 RDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKAC 451



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 99/214 (46%), Gaps = 34/214 (15%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C +  +   V+  +R R+ +SWNAIIA     G G + L  F  M ++ I+ D 
Sbjct: 382 IDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDE 441

Query: 63  FTITSIVGA-IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           FT  SI+ A  G   G+  G ++H+ I K G  SN  V   L+ MY+ CG I +A K+ S
Sbjct: 442 FTFGSILKACTGGSLGY--GMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHS 499

Query: 122 ----------SMDERD----------LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
                     +M+E +           VSWNS++ G      S +A  LF +M +  I P
Sbjct: 500 RFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITP 559

Query: 162 DGTTFLVVLSACC-----------HAGFIDKGLQ 184
           D  T+  VL  C            HA  I K LQ
Sbjct: 560 DKFTYATVLDTCANLASAGLGKQIHAQVIKKELQ 593



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 90/168 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+ +      + ++ +  R+ +SWN++++G+   G   ++++ F +M + GI+ D  T 
Sbjct: 82  YSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTF 141

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             I+     +     G Q+H ++ ++G D++V   + L+ MYA      ++ +VF  + E
Sbjct: 142 AIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPE 201

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           ++ VSW++++ GC  +     A++ F++MQK       + +  VL +C
Sbjct: 202 KNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSC 249



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 117/243 (48%), Gaps = 5/243 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++    ++   V+  +  +N +SW+AIIAG         ALK F EM++    +     
Sbjct: 183 YAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIY 242

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   +S  + G Q+HA   K  + ++  V+   + MYA C  + DA  +F + + 
Sbjct: 243 ASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSEN 302

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            +  S+N+++ G +   +  +A+ LF ++  + +  D  +   V  AC     + +GLQ 
Sbjct: 303 LNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQI 362

Query: 186 FYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + L +++  SL+   A    A + + G+   L EA    + M R    S + A+++A + 
Sbjct: 363 YGLAIKSSLSLDVCVA---NAAIDMYGKCQALAEAFRVFDEMRRRDAVS-WNAIIAAHEQ 418

Query: 245 HGN 247
           +G 
Sbjct: 419 NGK 421



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           +V   N+++  Y+    +  AN  F+ M  RD+VSWNS+L G   +G S +++++F  M 
Sbjct: 71  DVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMG 130

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +  I+ DG TF ++L  C        G+Q
Sbjct: 131 REGIEFDGRTFAIILKVCSFLEDTSLGMQ 159



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 5/159 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D + ++     R+ ++WNA+I G+ + G GE+A++ F  M    I  ++ T 
Sbjct: 606 YSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTF 665

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            SI+ A   +    +G +   ++ +  G D  +   + +V +    G +  A ++   M 
Sbjct: 666 ISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMP 725

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
            E D V W +LL  C  H   R  V++ E+     ++ D
Sbjct: 726 FEADDVIWRTLLGVCTIH---RNNVEVAEEATAALLRLD 761


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 175/301 (58%), Gaps = 3/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      +NV+++ R ++++S+N +I G+       Q+L  FSEMR  G   D  + 
Sbjct: 359 YAKCGCLHSARNVFNTSR-KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSF 417

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   ++  K+GK++H +  +    S++FV N L+  Y  CG I+ A ++F+ +  
Sbjct: 418 VGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILF 477

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+ SWN+++LG    G    A+ +FE M+   ++ D  +++ VLSAC H G +++G QY
Sbjct: 478 KDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQY 537

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M   A    P   HYT +V LLGRAGF+ EA   I  +   P  +++ ALL AC+++
Sbjct: 538 FSEML--AQRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIY 595

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+  R+A+ + +L P     Y+LLSN+   T  WD+A  IR LM +RG +K PG SW
Sbjct: 596 GNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSW 655

Query: 306 V 306
           V
Sbjct: 656 V 656



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 98/177 (55%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S      V++    +N++SWN+II G    G    AL  F  M  AG   +  TI
Sbjct: 157 YGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTI 216

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+  +  +  FK GK++H    ++G ++++F+ N L+ MYA  G   +A+ +F ++D 
Sbjct: 217 SSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDR 276

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           R++VSWN+++   A +    EA++   QMQ+T   P+  TF  VL AC   GF+  G
Sbjct: 277 RNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPG 333



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 101/177 (57%), Gaps = 1/177 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++   S +   ++ ++  RN +SWNA+IA +       +A++   +M++ G   +  T 
Sbjct: 258 YAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTF 317

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++ A   +     GK++HA+  +IG  S++FV N L+ MYA CG ++ A  VF++   
Sbjct: 318 TNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SR 376

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +D VS+N L++G +      +++ LF +M+    KPD  +F+ V+SAC +   + +G
Sbjct: 377 KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQG 433



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           M + G+ +D  T   ++          +G ++H ++FK+G+D++V+V N L+ +Y  CG 
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 113 INDANKVFSSMDERDLVSWNSLL-LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           +NDA ++F  M ERD+VSWN+++ L   +  Y+      F  + ++ IKP+  + + +L
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLL 119



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 101/228 (44%), Gaps = 5/228 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           ++ Y  C    D + ++  +  R+ +SWN II      G   +A   +  M  ++ I  +
Sbjct: 52  LMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPN 111

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             ++ S++     +   +  +++H    K+G DS V   N LV  Y  CG++    +VF+
Sbjct: 112 LVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFN 171

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
              E++ VSWNS++ G A  G   +A+  F  M     +P+  T   +L           
Sbjct: 172 ETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKA 231

Query: 182 GLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
           G + + + MR     +   A    +++ +  ++G   EA +  +++ R
Sbjct: 232 GKEIHGFSMRMGTETDIFIA---NSLIDMYAKSGHSTEASTIFHNLDR 276


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 173/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D    ++ +  R+  +W  II  +     GE+AL  F +M+Q G+  + FT+
Sbjct: 561 YAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTL 620

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              +     ++  + G+Q+H+++FK G+ S++FV + LV MYA CG + +A  +F ++  
Sbjct: 621 AGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIR 680

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD ++WN+++ G A +G   +A+  F  M    I PDG TF  +LSAC H G +++G ++
Sbjct: 681 RDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEH 740

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  + P   +H   +V +LGR G  +E E FI  M  +    +++ +L A ++H
Sbjct: 741 FNSMYRDFGISPT-VDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMH 799

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +  ++A ++ +L P + + Y+LLSN+      WDD   +R+LM ++G++K+PG SW
Sbjct: 800 NNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSW 859

Query: 306 V 306
           V
Sbjct: 860 V 860



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 130/271 (47%), Gaps = 5/271 (1%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C  S   + V + +  R+ +SW A+I G    G    ++  F EM+  GI  + FT
Sbjct: 156 VYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFT 215

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + + + A  +      GKQMHA  FK+G   ++FV + LV +YA CG I  A+K+F  M 
Sbjct: 216 LATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP 275

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E++ V+WN LL G A  G     ++LF  M + ++K +  T   VL  C ++  + +G Q
Sbjct: 276 EQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQG-Q 334

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
             + +      E         +V +  + G   +A     ++ + P   V+ AL++    
Sbjct: 335 VIHSLIIKCGYEGNEFIG-CGLVDMYSKCGLAIDAIGVFKTI-KKPDIVVWSALITCLDQ 392

Query: 245 HGNREIAVR--SAKRVLDLWPNDPAIYVLLS 273
            G  E +++     R+ D  PN   I  LLS
Sbjct: 393 QGQSEESIKLFHLMRLGDTLPNQYTICSLLS 423



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 104/215 (48%), Gaps = 2/215 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   +Y S+  R+ ISWNA ++G  + G  ++ L  F  M + G   + +T  SI+G+  
Sbjct: 468 DGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +     G+Q+HA I K   D N FV   L+ MYA C  + DA+  F+ +  RDL +W  
Sbjct: 528 CLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTV 587

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++   A      +A+  F QMQ+  +KP+  T    LS C     ++ G Q   ++    
Sbjct: 588 IITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSG 647

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
            +        +A+V +  + G + EAE+   ++ R
Sbjct: 648 HVSDMFVG--SALVDMYAKCGCMEEAEALFEALIR 680



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C  ++D   V+ +++  + + W+A+I      G  E+++K F  MR      + +TI
Sbjct: 359 YSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTI 418

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A       + G+ +HA ++K G++++V V N LV MY   G ++D  K++ SM +
Sbjct: 419 CSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVD 478

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RDL+SWN+ L G    G     + +F  M +    P+  TF+ +L +C     +  G Q 
Sbjct: 479 RDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQV 538

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
           + ++++N            TA++ +  +  +L +A+   N +S
Sbjct: 539 HAHIIKNQLDDNNFVC---TALIDMYAKCMYLEDADVAFNRLS 578



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 92/177 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        ++  +  +N ++WN ++ G+   G     LK F  M +  +  + FT+
Sbjct: 258 YAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTL 317

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++         K+G+ +H+LI K GY+ N F+   LV MY+ CG   DA  VF ++ +
Sbjct: 318 TTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKK 377

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            D+V W++L+      G S E+++LF  M+  +  P+  T   +LSA  + G +  G
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG 434



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 81  GKQMHALIFK--IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
            K +H LI K  I  DS+++V   LV +YA C     A  V + M +RD+VSW +L+ G 
Sbjct: 131 AKAIHGLIVKDVINPDSHLWVS--LVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGL 188

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
              G++ +++ LF++MQ   I P+  T    L AC     +D G Q
Sbjct: 189 VAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234


>gi|302793743|ref|XP_002978636.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
 gi|300153445|gb|EFJ20083.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
          Length = 438

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 104/277 (37%), Positives = 171/277 (61%), Gaps = 1/277 (0%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WNA+IA +   G   QA++ F E+    I+ +  T+  ++ A   ++  ++GK++HA+  
Sbjct: 34  WNAMIAAYVQHGDSRQAIRLFDELLARRIEPNSVTLMEVLDACASLAALRDGKRVHAIAR 93

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
             G DS V V   +V MY+ CG +++A + F+ ++  D VSW ++L   A HG+   A+ 
Sbjct: 94  DHGVDSEVAVATAIVDMYSKCGCLDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDRALA 153

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL 209
            F++MQ+   KP+  TF+ +LSAC H G +++G +YF LM     + P  A+HY  +V L
Sbjct: 154 TFQRMQEQGHKPNYVTFVHLLSACSHKGLVEEGRKYFDLMTARYGIAPD-AQHYACMVDL 212

Query: 210 LGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIY 269
           LGRAG+L+EAE F+N M   P  +V K+LLSAC+ + + +   R AKR+L+ + ++   Y
Sbjct: 213 LGRAGYLDEAEDFLNRMPGAPHAAVLKSLLSACRSYKDVDRGERIAKRMLESFWDESMPY 272

Query: 270 VLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           V+L+++ +A   W++A  IR+LM  RG+RK PG S +
Sbjct: 273 VVLASIYRAAGKWEEAARIRSLMVERGVRKDPGRSAI 309



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 80/152 (52%), Gaps = 3/152 (1%)

Query: 107 YAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
           +A  G ++ A ++F+  D   +  WN+++     HG SR+A++LF+++    I+P+  T 
Sbjct: 10  FAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLARRIEPNSVTL 69

Query: 167 LVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           + VL AC     +  G +   + R D  ++   A   TAIV +  + G L+EA      +
Sbjct: 70  MEVLDACASLAALRDGKRVHAIAR-DHGVDSEVAV-ATAIVDMYSKCGCLDEAVEAFARI 127

Query: 227 SRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258
            R+   S + A+L+A   HG+ + A+ + +R+
Sbjct: 128 ERHDTVS-WTAMLAAFAQHGHIDRALATFQRM 158



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 66/177 (37%), Gaps = 33/177 (18%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    +    ++ +   + +SW A++A F   G  ++AL  F  M++ G   +Y T 
Sbjct: 111 YSKCGCLDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTF 170

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A       +EG++   L                  M A  G   DA      +D 
Sbjct: 171 VHLLSACSHKGLVEEGRKYFDL------------------MTARYGIAPDAQHYACMVD- 211

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
                    LLG A  GY  EA     +M      P       +LSAC     +D+G
Sbjct: 212 ---------LLGRA--GYLDEAEDFLNRMPGA---PHAAVLKSLLSACRSYKDVDRG 254


>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 548

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 184/304 (60%), Gaps = 7/304 (2%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           +C      + ++     ++ ++WNA+I+G+ N G  ++AL  F EMR AG   D  TI S
Sbjct: 221 KCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIFKEMRDAGEHPDVVTILS 280

Query: 68  IVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQ----NRLVFMYAICGAINDANKVFSS 122
           ++ A  V+   + GK++H  I +     S+++V     N L+ MYA CG+I+ A +VF  
Sbjct: 281 LLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRG 340

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M +RDL +WN+L++G A H ++  +V++FE+MQ+ ++ P+  TF+ V+ AC H+G +D+G
Sbjct: 341 MKDRDLSTWNTLIVGLALH-HAEGSVEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEG 399

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF LMR+  ++EP   +HY  +V +LGRAG L EA  F+ SM   P   V++ LL AC
Sbjct: 400 RKYFSLMRDMYNIEP-NIKHYGCMVDMLGRAGLLEEAFMFVESMKIEPNAIVWRTLLGAC 458

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +++GN E+   + +++L +  ++   YVLLSN+  +T  WD    +R +  +  ++K  G
Sbjct: 459 KIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTG 518

Query: 303 YSWV 306
            S +
Sbjct: 519 ISLI 522



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 121/279 (43%), Gaps = 14/279 (5%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           N ++ G       E+ +  ++EM + G+  D +T T ++ A   +     G  +H  + +
Sbjct: 81  NHVLRGSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIHGKVVR 140

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
            G+  N +V+N L+  +A CG +  A+++F    +   V+W+S+  G A  G   EA++L
Sbjct: 141 HGFLLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRL 200

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLL 210
           F++M       D   + V+++ C     +D   + F     D   E         I G +
Sbjct: 201 FDEMP----DKDQVAWNVMITGCLKCREMDSARELF-----DRFTEKDVVTWNAMISGYV 251

Query: 211 GRAGFLNEAESFINSM---SRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267
              G+  EA S    M     +P      +LLSAC V G+ E   R    +L+      +
Sbjct: 252 N-CGYPKEALSIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSS 310

Query: 268 IYVLLSNVSKATDCWDDAGDI-RTLMYNRGIRKKPGYSW 305
           IYV     +   D +   G I R +   RG++ +   +W
Sbjct: 311 IYVGTPIWNALIDMYAKCGSIDRAIEVFRGMKDRDLSTW 349



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFM--YAICGAINDANKVFSSMDERDLVSWNSLL 135
           F+   Q+HA +   G  SN+ V   L++    ++ GA+  A+K+F  + + D+   N +L
Sbjct: 25  FRTLMQIHAFMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFEEIPKPDVSICNHVL 84

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            G A      + V L+ +M+K  + PD  TF  VL AC
Sbjct: 85  RGSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKAC 122


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 169/304 (55%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC  +   + ++  +  RN ++W+ +I+G+      E+A++ F  ++  G+  + 
Sbjct: 190 IAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANE 249

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             +  ++ +   +     G++ H  + +     N+ +   +V MYA CG +  A  VF  
Sbjct: 250 TVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQ 309

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + E+D++ W +L+ G A HGY+ +A+  F +M K    P   TF  VL+AC HAG +++G
Sbjct: 310 LPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERG 369

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+ F  M+ D  +E PR EHY  +V LLGRAG L +AE F+  M   P   +++ALL AC
Sbjct: 370 LEIFESMKRDHGVE-PRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGAC 428

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N E+  R  K +L++ P     YVLLSN+    + W D   +R +M ++G+RK PG
Sbjct: 429 RIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPG 488

Query: 303 YSWV 306
           YS +
Sbjct: 489 YSLI 492



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 117/269 (43%), Gaps = 40/269 (14%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V S ++  N   +NA+I G     + E +   + +  + G+  D  T   +V A   +  
Sbjct: 73  VASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLEN 132

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS---------------- 121
              G Q H    K G++ + +VQN LV MYA  G IN A  VF                 
Sbjct: 133 APMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAG 192

Query: 122 ---------------SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
                           M ER+LV+W++++ G A +    +AV+ FE +Q   +  + T  
Sbjct: 193 YHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVM 252

Query: 167 LVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINS 225
           + V+S+C H G +  G + + Y+MRN  SL        TA+V +  R G + +A      
Sbjct: 253 VGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILG---TAVVDMYARCGNVEKAVMVFEQ 309

Query: 226 MSRNPGPSV--YKALLSACQVHGNREIAV 252
           +   P   V  + AL++   +HG  E A+
Sbjct: 310 L---PEKDVLCWTALIAGLAMHGYAEKAL 335


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 173/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D    ++ +  R+  +W  II  +     GE+AL  F +M+Q G+  + FT+
Sbjct: 561 YAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTL 620

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              +     ++  + G+Q+H+++FK G+ S++FV + LV MYA CG + +A  +F ++  
Sbjct: 621 AGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIR 680

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD ++WN+++ G A +G   +A+  F  M    I PDG TF  +LSAC H G +++G ++
Sbjct: 681 RDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEH 740

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  + P   +H   +V +LGR G  +E E FI  M  +    +++ +L A ++H
Sbjct: 741 FNSMYRDFGISPT-VDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMH 799

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +  ++A ++ +L P + + Y+LLSN+      WDD   +R+LM ++G++K+PG SW
Sbjct: 800 NNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSW 859

Query: 306 V 306
           V
Sbjct: 860 V 860



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 130/271 (47%), Gaps = 5/271 (1%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C  S   + V + +  R+ +SW A+I G    G    ++  F EM+  GI  + FT
Sbjct: 156 VYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFT 215

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + + + A  +      GKQMHA  FK+G   ++FV + LV +YA CG I  A+K+F  M 
Sbjct: 216 LATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP 275

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E++ V+WN LL G A  G     ++LF  M + ++K +  T   VL  C ++  + +G Q
Sbjct: 276 EQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQG-Q 334

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
             + +      E         +V +  + G   +A     ++ + P   V+ AL++    
Sbjct: 335 VIHSLIIKCGYEGNEFIG-CGLVDMYSKCGLAIDAIGVFKTI-KKPDIVVWSALITCLDQ 392

Query: 245 HGNREIAVR--SAKRVLDLWPNDPAIYVLLS 273
            G  E +++     R+ D  PN   I  LLS
Sbjct: 393 QGQSEESIKLFHLMRLGDTLPNQYTICSLLS 423



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 104/215 (48%), Gaps = 2/215 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   +Y S+  R+ ISWNA ++G  + G  ++ L  F  M + G   + +T  SI+G+  
Sbjct: 468 DGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +     G+Q+HA I K   D N FV   L+ MYA C  + DA+  F+ +  RDL +W  
Sbjct: 528 CLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTV 587

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++   A      +A+  F QMQ+  +KP+  T    LS C     ++ G Q   ++    
Sbjct: 588 IITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSG 647

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
            +        +A+V +  + G + EAE+   ++ R
Sbjct: 648 HVSDMFVG--SALVDMYAKCGCMEEAEALFEALIR 680



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C  ++D   V+ +++  + + W+A+I      G  E+++K F  MR      + +TI
Sbjct: 359 YSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTI 418

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A       + G+ +HA ++K G++++V V N LV MY   G ++D  K++ SM +
Sbjct: 419 CSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVD 478

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RDL+SWN+ L G    G     + +F  M +    P+  TF+ +L +C     +  G Q 
Sbjct: 479 RDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQV 538

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
           + ++++N            TA++ +  +  +L +A+   N +S
Sbjct: 539 HAHIIKNQLDDNNFVC---TALIDMYAKCMYLEDADVAFNRLS 578



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 92/177 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        ++  +  +N ++WN ++ G+   G     LK F  M +  +  + FT+
Sbjct: 258 YAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTL 317

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++         K+G+ +H+LI K GY+ N F+   LV MY+ CG   DA  VF ++ +
Sbjct: 318 TTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKK 377

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            D+V W++L+      G S E+++LF  M+  +  P+  T   +LSA  + G +  G
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG 434



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 81  GKQMHALIFK--IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
            K +H LI K  I  DS+++V   LV +YA C     A  V + M +RD+VSW +L+ G 
Sbjct: 131 AKAIHGLIVKDVINPDSHLWVS--LVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGL 188

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
              G++ +++ LF++MQ   I P+  T    L AC     +D G Q
Sbjct: 189 VAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 173/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     D    +  +  R+  SW  II+G+      E+A+K F +M++ GI  + +T+
Sbjct: 298 YAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTL 357

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S +     ++  + G+Q+HA+  K G+  ++FV + LV +Y  CG +  A  +F  +  
Sbjct: 358 ASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLIS 417

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWN+++ G + HG   +A++ F  M    I PD  TF+ VLSAC   G +++G + 
Sbjct: 418 RDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKR 477

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M     + P   EHY  +V +LGRAG  NE + FI  M+  P   +++ +L AC++H
Sbjct: 478 FDSMSKIYGINPS-IEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLH 536

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN +   ++AK++ ++ P   + Y+LLSN+  +   WDD  +IR LM +RGI+K+PG SW
Sbjct: 537 GNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSW 596

Query: 306 V 306
           V
Sbjct: 597 V 597



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 91/168 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C +  D   V++ +R  + ++W+A+I G    G G++A + F  MR+ G   + FT+
Sbjct: 96  YSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTL 155

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S+V     +   + G+ +H  I K G++S+  V N L+ MY     + D NKVF +M  
Sbjct: 156 SSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTN 215

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            DLVSWN+LL G           ++F QM     KP+  TF+ VL +C
Sbjct: 216 PDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSC 263



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 131/282 (46%), Gaps = 17/282 (6%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y +     D   V+ ++   + +SWNA+++GF +  +  +  + F +M   G   + 
Sbjct: 194 IMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNM 253

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  S++ +   +   + GKQ+HA I K   D + FV   LV MYA    + DA   F  
Sbjct: 254 FTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDR 313

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  RD+ SW  ++ G A    + +AV+ F QMQ+  IKP+  T    LS C H   ++ G
Sbjct: 314 LVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENG 373

Query: 183 LQYFYLMRNDASLEPPRAEHY------TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYK 236
            Q   +          +A H+      +A+V L G+ G +  AE+    +      S + 
Sbjct: 374 RQLHAV--------AVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVS-WN 424

Query: 237 ALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVS 276
            ++S    HG  E A+ + + +L   + P++     +LS  S
Sbjct: 425 TIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACS 466



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 93/162 (57%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  +N +SWNA++ G+  LG G++ LK F +M++       FT+++++      
Sbjct: 5   ERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANT 64

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              +EGK +HAL  + G + + F+   LV MY+ CG + DA KVF+ +   D+V+W++++
Sbjct: 65  GSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMI 124

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
            G    G+ +EA +LF  M++   +P+  T   ++S   + G
Sbjct: 125 TGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMG 166



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 14/177 (7%)

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
           A ++F  M E++ VSWN+LL G A  G  ++ ++LF +M++ E K    T   VL  C +
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 176 AGFIDKG-LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
            G + +G + +   +R+   ++        ++V +  + G + +A      + RNP    
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLG---CSLVDMYSKCGTVYDALKVFTKI-RNPDVVA 119

Query: 235 YKALLSAC--QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIR 289
           + A+++    Q HG     +    R     PN    + L S VS AT    + GD+R
Sbjct: 120 WSAMITGLDQQGHGQEAAELFHLMRRKGARPNQ---FTLSSLVSTAT----NMGDLR 169


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/310 (35%), Positives = 182/310 (58%), Gaps = 7/310 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++  +  D Q V+  +  +N ++WN +IA + +    E+AL+ F  +++  +   +
Sbjct: 322 ITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTH 381

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGY------DSNVFVQNRLVFMYAICGAINDA 116
           +T  +++ A   ++  + G+Q H  + K G+      +S+VFV N LV MY   G+I+D 
Sbjct: 382 YTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDG 441

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
            KVF  M  RD VSWN++++G A +G +++A+ LFE+M  +  +PD  T + VLSAC H+
Sbjct: 442 AKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHS 501

Query: 177 GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYK 236
           G + +G +YF  M  D  + P R +HYT ++ LLGRAG L E E  I +M   P   ++ 
Sbjct: 502 GLVKEGRRYFQSMTEDHGIIPTR-DHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWA 560

Query: 237 ALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
           +LL AC++H N ++   +A ++ +L P++   YVLLSN+      W D   +R  M +RG
Sbjct: 561 SLLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRG 620

Query: 297 IRKKPGYSWV 306
           + K+PG SW+
Sbjct: 621 VSKQPGCSWI 630



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 13/227 (5%)

Query: 7   SRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT 66
           +R   + D   ++ ++   +Q S+NA++A     G G  AL+  + M      ++ ++  
Sbjct: 92  ARLGRADDALALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFA 151

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
           S + A       + G+Q+HAL+ K  + S+V++   LV MYA C    +A KVF +M ER
Sbjct: 152 SALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPER 211

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
           ++VSWNSL+     +G   EA+ LF +M K    PD  T   V+SAC       +G Q  
Sbjct: 212 NIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVH 271

Query: 187 YLM------RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
             M      R D  L         A+V +  + G   EA+   + M+
Sbjct: 272 TRMVKSDRFREDMVLN-------NALVDMYAKCGRTWEAKCVFDRMA 311



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 102/211 (48%), Gaps = 32/211 (15%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+   + Q V+ ++  RN +SWN++I  +   G  ++AL  F  M + G   D  T+
Sbjct: 192 YAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTL 251

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGA------------ 112
            S++ A   ++  +EG+Q+H  + K   +  ++ + N LV MYA CG             
Sbjct: 252 ASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMA 311

Query: 113 -------------------INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                              + DA  VF  M E+++V+WN L+   AH+    EA++LF +
Sbjct: 312 IRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVR 371

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++  + P   T+  VL+AC +   +  G Q
Sbjct: 372 LKRESVWPTHYTYGNVLNACANLANLQLGQQ 402



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 4/100 (4%)

Query: 93  YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
           +    F+ N L+  YA  G+++DA +VF  M  R+  S+N+LL  CA  G + +A+ LF 
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105

Query: 153 QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
            +      PD  ++  V++A    G     L++   M  D
Sbjct: 106 AIP----DPDQCSYNAVVAALAQHGRGGDALRFLAAMHAD 141



 Score = 40.8 bits (94), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 4/129 (3%)

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           + F + +++ A   +    + ++    +F      N F  N L+   A  G  +DA  +F
Sbjct: 49  ETFLLNTLLSAYARLGSLHDARR----VFDGMPHRNTFSYNALLSACARLGRADDALALF 104

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            ++ + D  S+N+++   A HG   +A++    M   +   +  +F   LSAC       
Sbjct: 105 GAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASR 164

Query: 181 KGLQYFYLM 189
            G Q   L+
Sbjct: 165 TGEQVHALV 173


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 175/301 (58%), Gaps = 3/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      +NV+++ R ++++S+N +I G+       Q+L  FSEMR  G   D  + 
Sbjct: 508 YAKCGCLHSARNVFNTSR-KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSF 566

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   ++  K+GK++H +  +    S++FV N L+  Y  CG I+ A ++F+ +  
Sbjct: 567 VGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILF 626

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+ SWN+++LG    G    A+ +FE M+   ++ D  +++ VLSAC H G +++G QY
Sbjct: 627 KDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQY 686

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M   A    P   HYT +V LLGRAGF+ EA   I  +   P  +++ ALL AC+++
Sbjct: 687 FSEML--AQRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIY 744

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E+  R+A+ + +L P     Y+LLSN+   T  WD+A  IR LM +RG +K PG SW
Sbjct: 745 GNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSW 804

Query: 306 V 306
           V
Sbjct: 805 V 805



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 98/177 (55%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S      V++    +N++SWN+II G    G    AL  F  M  AG   +  TI
Sbjct: 306 YGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTI 365

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+  +  +  FK GK++H    ++G ++++F+ N L+ MYA  G   +A+ +F ++D 
Sbjct: 366 SSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDR 425

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           R++VSWN+++   A +    EA++   QMQ+T   P+  TF  VL AC   GF+  G
Sbjct: 426 RNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPG 482



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 101/177 (57%), Gaps = 1/177 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++   S +   ++ ++  RN +SWNA+IA +       +A++   +M++ G   +  T 
Sbjct: 407 YAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTF 466

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++ A   +     GK++HA+  +IG  S++FV N L+ MYA CG ++ A  VF++   
Sbjct: 467 TNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SR 525

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +D VS+N L++G +      +++ LF +M+    KPD  +F+ V+SAC +   + +G
Sbjct: 526 KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQG 582



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 89/167 (53%), Gaps = 15/167 (8%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           T+  C ++     +++++   + I+WN    GF          + ++ M + G+ +D  T
Sbjct: 116 TFQNCRTAF----LWNTLIRAHSIAWNGTFDGF----------ETYNRMVRRGVQLDDHT 161

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
              ++          +G ++H ++FK+G+D++V+V N L+ +Y  CG +NDA ++F  M 
Sbjct: 162 FPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMP 221

Query: 125 ERDLVSWNSLL-LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           ERD+VSWN+++ L   +  Y+      F  + ++ IKP+  + + +L
Sbjct: 222 ERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLL 268



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 101/228 (44%), Gaps = 5/228 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           ++ Y  C    D + ++  +  R+ +SWN II      G   +A   +  M  ++ I  +
Sbjct: 201 LMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPN 260

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             ++ S++     +   +  +++H    K+G DS V   N LV  Y  CG++    +VF+
Sbjct: 261 LVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFN 320

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
              E++ VSWNS++ G A  G   +A+  F  M     +P+  T   +L           
Sbjct: 321 ETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKA 380

Query: 182 GLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
           G + + + MR     +   A    +++ +  ++G   EA +  +++ R
Sbjct: 381 GKEIHGFSMRMGTETDIFIA---NSLIDMYAKSGHSTEASTIFHNLDR 425


>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
 gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
          Length = 605

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 175/302 (57%), Gaps = 6/302 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +    Q ++  +  RN +SW+A++A +C+ G  E+A+  F EM++    +D ++ 
Sbjct: 309 YGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMKE----VDLYSF 364

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A   ++    GK++H    + G   +V V++ LV +YA CG IN A +VF  M  
Sbjct: 365 GTVIRACAGLAAVTPGKEIHCQYIRKGGWRDVIVESALVDLYAKCGCINFAYRVFDRMPT 424

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+L++WNS++ G A +G S  A+Q+FE M K  IKPD  +F+ +L AC H G +D+   Y
Sbjct: 425 RNLITWNSMIHGFAQNGSSGIAIQIFEAMIKEGIKPDCISFIGLLFACSHTGLVDQARHY 484

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM     ++P   EHY  +V LLGRAG L EAE+ I +       S++  LL AC   
Sbjct: 485 FDLMTGKYGIKPG-VEHYNCMVDLLGRAGLLEEAENLIENAECRNDSSLWLVLLGACTTT 543

Query: 246 -GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
             N   A R AK++++L P     YV L+NV +A   WDDA  +R LM NR ++K PG S
Sbjct: 544 CTNSATAERIAKKLMELEPQCYLSYVHLANVYRAVGRWDDAVKVRELMKNRQLKKMPGQS 603

Query: 305 WV 306
           W+
Sbjct: 604 WM 605



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 8/226 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFS-EMRQAGIDIDYFT 64
           Y R   S D + ++  +   + + W  +I+ F      E+AL  F  + R   +  D +T
Sbjct: 207 YGRNSVSSDARQLFDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNYT 266

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++ A G +   ++G+++HA +   G+  NV  ++ LV MY  CGA+  + ++F  M 
Sbjct: 267 FGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMS 326

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            R+ VSW++LL    H+G   +AV LF +M++ ++   GT    V+ AC     +  G +
Sbjct: 327 NRNSVSWSALLAVYCHNGDYEKAVNLFREMKEVDLYSFGT----VIRACAGLAAVTPGKE 382

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM-SRN 229
                           E  +A+V L  + G +N A    + M +RN
Sbjct: 383 IHCQYIRKGGWRDVIVE--SALVDLYAKCGCINFAYRVFDRMPTRN 426



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 18/260 (6%)

Query: 12  SLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA 71
           SL  + V+  +  ++ +SW ++I G+   G    A++ F +M  +GI+ + FT+++++ A
Sbjct: 112 SLLTRRVFDGLFVKDVVSWASMITGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKA 171

Query: 72  IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
              I     GK  H ++ + G+DSN  + + L+ MY      +DA ++F  + E D V W
Sbjct: 172 CSEIGNLVLGKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCW 231

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQYF---- 186
            +++     +    EA+  F    +   + PD  TF  VL+AC + G + +G +      
Sbjct: 232 TTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVI 291

Query: 187 -YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            Y    +   E       +++V + G+ G + +++   + MS N     + ALL+    +
Sbjct: 292 AYGFSGNVVTE-------SSLVDMYGKCGAVEKSQRLFDRMS-NRNSVSWSALLAVYCHN 343

Query: 246 GNREIAV---RSAKRVLDLW 262
           G+ E AV   R  K V DL+
Sbjct: 344 GDYEKAVNLFREMKEV-DLY 362



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 8/243 (3%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           + +     C SS   QN   S     ++S    I  FC  G    AL   + +      I
Sbjct: 1   MMLFLKRHCSSSFTSQNFKYSTHPSIKLSQ---ILQFCKSGLLNDALHLLNSIDLYDSRI 57

Query: 61  DY-FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN-DANK 118
           +      S++     +  F  G+Q HA + K G +++ FV N L+ +Y   G+ +    +
Sbjct: 58  NKPLLYASLLQTCIKVDSFTRGRQFHAHVVKSGLETDRFVGNSLLSLYFKLGSDSLLTRR 117

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           VF  +  +D+VSW S++ G    G S  A++LF  M  + I+P+G T   V+ AC   G 
Sbjct: 118 VFDGLFVKDVVSWASMITGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSEIGN 177

Query: 179 IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
           +  G  +  ++        P     ++++ + GR    ++A    + +   P P  +  +
Sbjct: 178 LVLGKCFHGVVVRRGFDSNPVI--LSSLIDMYGRNSVSSDARQLFDEL-LEPDPVCWTTV 234

Query: 239 LSA 241
           +SA
Sbjct: 235 ISA 237


>gi|242093560|ref|XP_002437270.1| hypothetical protein SORBIDRAFT_10g023920 [Sorghum bicolor]
 gi|241915493|gb|EER88637.1| hypothetical protein SORBIDRAFT_10g023920 [Sorghum bicolor]
          Length = 597

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 176/301 (58%), Gaps = 3/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C   +D + V+  ++ RN +SW A++ G+C  G  E+ L  F +M     D D+++ 
Sbjct: 293 YAKCGMMVDARKVFDRMKVRNAVSWCALLGGYCQSGMHEKVLSLFRQMYME--DDDWYSF 350

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ +   +S  K GK++H    ++    +V V++ LV +YA CG +  A +VF     
Sbjct: 351 GTLLRSCSGLSAVKLGKEIHCRFMRMRGCRDVIVESALVDLYAKCGVVEYAYRVFERSSV 410

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++++WN+++ GCA +G++  A+ LF +M +  +KPD  +F+ VL AC H G +++G  Y
Sbjct: 411 RNMITWNAMICGCAQNGHAERAISLFNEMLREGVKPDYISFIGVLFACSHTGMVEEGRNY 470

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M     + PP  EHY  IV LL R  FL EAE  +N        S++ A+L AC  H
Sbjct: 471 FNSMSKVYGI-PPGIEHYNCIVDLLSRVEFLEEAEDLVNKSPFRDDSSLWAAILGACATH 529

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++AVR AK++++L P+    YVLL NV +    W+DA ++R +M +R ++K+ G S 
Sbjct: 530 TNPDVAVRVAKKMMELEPHFHLSYVLLENVYRTIGRWEDAVEVRRVMKSRKVKKEAGTSR 589

Query: 306 V 306
           +
Sbjct: 590 I 590



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 116/254 (45%), Gaps = 18/254 (7%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFT 64
           Y    +  D +  +  +R  + I + ++I+ F       +AL  F  M  A G+  D  T
Sbjct: 191 YGHSGAPGDARRAFEEMRAPDGICYTSLISAFVRNDWFNEALLWFRAMVVADGVWPDGCT 250

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++ A+G +   ++G++ HA +   G   NV V++  + MYA CG + DA KVF  M 
Sbjct: 251 FGSVMTALGNLKRARQGREAHAQVVTRGLCGNVIVESSTLDMYAKCGMMVDARKVFDRMK 310

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            R+ VSW +LL G    G   + + LF QM   +   D  +F  +L +C     +  G +
Sbjct: 311 VRNAVSWCALLGGYCQSGMHEKVLSLFRQMYMED--DDWYSFGTLLRSCSGLSAVKLGKE 368

Query: 185 Y---FYLMR--NDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKAL 238
               F  MR   D  +E       +A+V L  + G +  A   F  S  RN     + A+
Sbjct: 369 IHCRFMRMRGCRDVIVE-------SALVDLYAKCGVVEYAYRVFERSSVRN--MITWNAM 419

Query: 239 LSACQVHGNREIAV 252
           +  C  +G+ E A+
Sbjct: 420 ICGCAQNGHAERAI 433



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 9/165 (5%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG--------IDIDYFTITSI 68
             +  +  R+ ++ ++++A F   G   +AL     M   G        +      +++ 
Sbjct: 93  KAFDDLPRRDVVAHSSVLAAFLRAGLPRRALLQLRTMASGGCGTDDDDDVAPRAHALSAS 152

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
             A  V+   + G  +H  +   GY  +  V + LV MY   GA  DA + F  M   D 
Sbjct: 153 AKACAVLRDLRAGACVHGTVVVRGYGDDGVVLSALVDMYGHSGAPGDARRAFEEMRAPDG 212

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSA 172
           + + SL+     + +  EA+  F  M   + + PDG TF  V++A
Sbjct: 213 ICYTSLISAFVRNDWFNEALLWFRAMVVADGVWPDGCTFGSVMTA 257


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/287 (38%), Positives = 162/287 (56%), Gaps = 1/287 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  +N ++W  II+GF   G  ++A   +++M  AG+  D  T+ SI+ A      
Sbjct: 273 LFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGL 332

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              GK++HA I KI    +V V N LV MYA CG ++ A  +F+ M  RDLVSWN +L G
Sbjct: 333 LVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQG 392

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG+  +A+QLF +MQ+   KPD  T + +L AC HAGF+D+GL YF  M  D  +  
Sbjct: 393 LAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGI-V 451

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P  EHY  ++ LLGR G L EA   + SM   P   ++  LL AC+VH    +A +   R
Sbjct: 452 PHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDR 511

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           ++ L  +DP  Y +LSN+  A   W+   ++R  M + G++K  G S
Sbjct: 512 LITLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGAS 558



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 25/259 (9%)

Query: 3   ILTYSRCDS-SLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           I +YS+C    +++   ++  +  ++ +SWN++I G    G   +A K F EM +     
Sbjct: 163 IDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAE----- 217

Query: 61  DYFTITSIVGAIGVISGF-KEGKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
                   V    ++ G+ K G+   A  +F+   + NV   + +V  Y   G +  A  
Sbjct: 218 -----RDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARM 272

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           +F  M  ++LV+W  ++ G A  G ++EA  L+ QM+   +KPD  T + +L+AC  +G 
Sbjct: 273 LFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGL 332

Query: 179 IDKGLQYFYLMRNDASLEPPRAE----HYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
           +  G +        AS++  R +       A+V +  + G +++A S  N MS     S 
Sbjct: 333 LVLGKKVH------ASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVS- 385

Query: 235 YKALLSACQVHGNREIAVR 253
           +  +L    +HG+ E A++
Sbjct: 386 WNCMLQGLAMHGHGEKAIQ 404



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 111/274 (40%), Gaps = 34/274 (12%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +S C       NV++ ++  N   +N +I          +A   F +M++ G+  D 
Sbjct: 62  ISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADN 121

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICG--AINDANKVF 120
           FT   ++ A          + +H  + K G+  ++FV N L+  Y+ CG   +N A K+F
Sbjct: 122 FTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLF 181

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M E+DLVSWNS++ G    G    A +LF++M +     D  ++  +L     AG + 
Sbjct: 182 MEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAER----DAVSWNTILDGYVKAGEMS 237

Query: 181 KGLQYFYLM--RNDAS-------------LEPPRA----------EHYTAIVGLLGRAGF 215
           +    F  M  RN  S             +E  R             +T I+      G 
Sbjct: 238 QAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGL 297

Query: 216 LNEAESFINSMSR---NPGPSVYKALLSACQVHG 246
             EA +  N M      P      ++L+AC   G
Sbjct: 298 AKEATTLYNQMEAAGLKPDDGTLISILAACAESG 331



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 14/161 (8%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C       ++++ +  R+ +SWN ++ G    G GE+A++ FS+M+Q G   D  T+
Sbjct: 362 YAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTL 421

Query: 66  TSIVGAIGV-------ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
            +I+ A          +S F   ++ H ++  I +         ++ +    G + +A +
Sbjct: 422 IAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEH------YGCMIDLLGRGGRLEEAFR 475

Query: 119 VFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
           +  SM  E + V W +LL  C  H     A ++ +++   E
Sbjct: 476 LVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLE 516



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 55/104 (52%)

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           + F   K++HA I K    ++++V  +L+  +++C  +N A  VF+ + + ++  +N+L+
Sbjct: 34  TDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLI 93

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
                +  S +A   F  MQK  +  D  T+  +L AC   G++
Sbjct: 94  RAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWL 137


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 171/293 (58%), Gaps = 5/293 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDIDYFTITSIVGAIGVI 75
           ++  +  RN +SW  +I+G+   G  +QAL  F EM    +G+  ++ TI S++ A   +
Sbjct: 259 IFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQL 318

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD--ERDLVSWNS 133
           S  + G+Q+H L  ++G +SN  V   L  MYA CG++ DA   F  ++  E++L++WN+
Sbjct: 319 STLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNT 378

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++   A +G+  +AV  F +M +  I+PD  TF  +LS C H+G +D GL+YF  M    
Sbjct: 379 MITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTY 438

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           S+ P R EHY  +  LLGRAG L EA   +  M    GPS++ +LL+AC+ H N E+A  
Sbjct: 439 SINP-RVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAET 497

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +A+++  L P +   YVLLSN+      W +   +R ++ ++G +K PG SW+
Sbjct: 498 AARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWI 550



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 145/310 (46%), Gaps = 51/310 (16%)

Query: 10  DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIV 69
           DSS+   +V++ +   + + +N++I  +   G  E+ +  +  M   G   DYFT   ++
Sbjct: 122 DSSV---SVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVL 178

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
            +   +     GK +H LI +IG   +++V   L+ +Y  CG INDA KVF +M  RD+ 
Sbjct: 179 KSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVS 238

Query: 130 SWNSLLL-----GC--------------------------AHHGYSREAVQLFEQMQKTE 158
           SWN+LL      GC                          +  G +++A+ LF++M K +
Sbjct: 239 SWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKED 298

Query: 159 --IKPDGTTFLVVLSACCHAGFIDKGLQYFYL-----MRNDASLEPPRAEHYTAIVGLLG 211
             ++P+  T + VL AC     +++G Q   L     + ++AS+         A+  +  
Sbjct: 299 SGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASV-------LIALTAMYA 351

Query: 212 RAGFLNEAESFINSMSRNPGPSV-YKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAI 268
           + G L +A +  + ++RN    + +  +++A   +G+   AV + + ++   + P+D   
Sbjct: 352 KCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITF 411

Query: 269 YVLLSNVSKA 278
             LLS  S +
Sbjct: 412 TGLLSGCSHS 421



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 26/162 (16%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K G Q+HA +   G      V +++V  YA  G I+ +  VF+ + E   + +NS++  
Sbjct: 86  LKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRA 145

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA-----------CCHAGFIDKGLQY- 185
            A +G++   V  +  M       D  TF  VL +           C H   +  GLQ+ 
Sbjct: 146 YARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFD 205

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
            Y+               T+++ L G+ G +N+A    ++M+
Sbjct: 206 LYVA--------------TSLIILYGKCGEINDAGKVFDNMT 233


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 179/307 (58%), Gaps = 7/307 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D   ++  +R ++  SWN+I++     G  +  L+    M  AGI  D  T+
Sbjct: 282 YGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTV 341

Query: 66  TSIVGAIGVISGFKEGKQMHA--LIFKIGYD----SNVFVQNRLVFMYAICGAINDANKV 119
           T+++ A   ++    G+++H   ++  +G D     +V ++N ++ MYA CG++ DA+ V
Sbjct: 342 TTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLV 401

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M  +D+ SWN +++G   HGY  EA+++F +M + ++KPD  TF+ VLSAC HAGF+
Sbjct: 402 FERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFV 461

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
            +G  +   M++   +  P  EHYT ++ +LGRAG L+EA     +M     P V++ALL
Sbjct: 462 SQGRNFLVQMKSKYDV-APTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALL 520

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           +AC++H +  +A  +A+RV +L P     YVL+SNV  A   +++  ++R  M  + +RK
Sbjct: 521 AACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRK 580

Query: 300 KPGYSWV 306
            PG SW+
Sbjct: 581 TPGCSWI 587



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 124/269 (46%), Gaps = 7/269 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q  +  +  R+ + WNA++ G+  +G  E  L+ F  M    +    FT+T ++    V+
Sbjct: 191 QVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVM 250

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+ +H    K+GYDS V V N L+ MY  C  I DA ++F  M E+D+ SWNS++
Sbjct: 251 GDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIV 310

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
                 G     ++L ++M    I+PD  T   VL AC H   +  G + + Y++ +   
Sbjct: 311 SVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLG 370

Query: 195 LEPPRAEHY---TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
            +    +      A++ +  + G + +A      MS N   + +  ++    +HG    A
Sbjct: 371 KDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMS-NKDVASWNIMIMGYGMHGYGNEA 429

Query: 252 VRSAKRV--LDLWPNDPAIYVLLSNVSKA 278
           +    R+  + L P++     +LS  S A
Sbjct: 430 LEMFSRMCEVQLKPDEVTFVGVLSACSHA 458



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 4/178 (2%)

Query: 6   YSRCDSSLDFQNVYS-SVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS+C+      +++S      N  ++NAII+GF   G  E+  + + +MR  G+  D FT
Sbjct: 82  YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFT 141

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
                 AI       E K++H L+FK G + +VF+ + LV  Y   G +  A   F  + 
Sbjct: 142 FPC---AIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELP 198

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            RD+V WN+++ G A  G     ++ F +M    + P   T   VLS     G ++ G
Sbjct: 199 IRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNG 256



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 99/227 (43%), Gaps = 16/227 (7%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS-SMDERDLVSWNSLLLGC 138
           +GK++H+ +   G+ ++      L+ MY+ C  +N A  +FS    E ++ ++N+++ G 
Sbjct: 55  KGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGF 114

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK--GLQYFYLMRNDASLE 196
             +G+  E  + +++M+   + PD  TF   + AC     I K  GL + + +  D  + 
Sbjct: 115 ITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIKKIHGLLFKFGLELDVFIG 174

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
                  +A+V    + G +  A+     +       ++ A+++     G  E+ + + +
Sbjct: 175 -------SALVNCYLKFGLMEHAQVAFEELPIR-DVVLWNAMVNGYAQIGQFEMVLETFR 226

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
           R+     ND ++      V+     +   GD+       G   K GY
Sbjct: 227 RM-----NDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGY 268


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 171/293 (58%), Gaps = 5/293 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDIDYFTITSIVGAIGVI 75
           ++  +  RN +SW  +I+G+   G  +QAL  F EM    +G+  ++ TI S++ A   +
Sbjct: 222 IFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQL 281

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD--ERDLVSWNS 133
           S  + G+Q+H L  ++G +SN  V   L  MYA CG++ DA   F  ++  E++L++WN+
Sbjct: 282 STLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNT 341

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++   A +G+  +AV  F +M +  I+PD  TF  +LS C H+G +D GL+YF  M    
Sbjct: 342 MITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTY 401

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           S+ P R EHY  +  LLGRAG L EA   +  M    GPS++ +LL+AC+ H N E+A  
Sbjct: 402 SINP-RVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAET 460

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +A+++  L P +   YVLLSN+      W +   +R ++ ++G +K PG SW+
Sbjct: 461 AARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWI 513



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 121/259 (46%), Gaps = 48/259 (18%)

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           DYFT   ++ +   +     GK +H LI +IG   +++V   L+ +Y  CG INDA KVF
Sbjct: 133 DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVF 192

Query: 121 SSMDERDLVSWNSLLL-----GC--------------------------AHHGYSREAVQ 149
            +M  RD+ SWN+LL      GC                          +  G +++A+ 
Sbjct: 193 DNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALS 252

Query: 150 LFEQMQKTE--IKPDGTTFLVVLSACCHAGFIDKGLQYFYL-----MRNDASLEPPRAEH 202
           LF++M K +  ++P+  T + VL AC     +++G Q   L     + ++AS+       
Sbjct: 253 LFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASV------- 305

Query: 203 YTAIVGLLGRAGFLNEAESFINSMSRNPGPSV-YKALLSACQVHGNREIAVRSAKRVLD- 260
             A+  +  + G L +A +  + ++RN    + +  +++A   +G+   AV + + ++  
Sbjct: 306 LIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQA 365

Query: 261 -LWPNDPAIYVLLSNVSKA 278
            + P+D     LLS  S +
Sbjct: 366 GIQPDDITFTGLLSGCSHS 384


>gi|334186610|ref|NP_193380.3| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|223635634|sp|O23491.2|PP315_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g16470
 gi|332658358|gb|AEE83758.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 501

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/289 (35%), Positives = 170/289 (58%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ S++ R+ I WNA+I+G+   G  ++ L  + +MRQ  I  D +T  S+  A   +  
Sbjct: 165 LFRSLKIRDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDR 224

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + GK+ HA++ K    SN+ V + LV MY  C + +D ++VF  +  R++++W SL+ G
Sbjct: 225 LEHGKRAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISG 284

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
             +HG   E ++ FE+M++   +P+  TFLVVL+AC H G +DKG ++FY M+ D  +E 
Sbjct: 285 YGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHFYSMKRDYGIE- 343

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P  +HY A+V  LGRAG L EA  F+        P V+ +LL AC++HGN ++   +A +
Sbjct: 344 PEGQHYAAMVDTLGRAGRLQEAYEFVMKSPCKEHPPVWGSLLGACRIHGNVKLLELAATK 403

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            L+L P +   YV+ +N   +    + A  +R  M N G++K PGYS +
Sbjct: 404 FLELDPTNGGNYVVFANGYASCGLREAASKVRRKMENAGVKKDPGYSQI 452



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 80/158 (50%), Gaps = 3/158 (1%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R     +  + G C  G  ++A+     +  +G+ ++  T   ++        + +GK++
Sbjct: 74  RKTEKLDKTLKGLCVTGRLKEAVGL---LWSSGLQVEPETYAVLLQECKQRKEYTKGKRI 130

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA +F +G+  N +++ +L+ +YA+ G +  A  +F S+  RDL+ WN+++ G    G  
Sbjct: 131 HAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRSLKIRDLIPWNAMISGYVQKGLE 190

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +E + ++  M++  I PD  TF  V  AC     ++ G
Sbjct: 191 QEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHG 228



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 6/141 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D   V+  + TRN I+W ++I+G+   G   + LKCF +M++ G   +  T 
Sbjct: 254 YFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTF 313

Query: 66  TSIVGAI---GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK-VFS 121
             ++ A    G++   K  +  +++    G +        +V      G + +A + V  
Sbjct: 314 LVVLTACNHGGLVD--KGWEHFYSMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEFVMK 371

Query: 122 SMDERDLVSWNSLLLGCAHHG 142
           S  +     W SLL  C  HG
Sbjct: 372 SPCKEHPPVWGSLLGACRIHG 392


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 175/302 (57%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C   LD  + ++S +  +++++WN++I+ F   G  E+AL  F EM   G+     T
Sbjct: 494 YAKC-GRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVT 552

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I+S++ A   +     GK++H ++ K    +++F ++ L+ MY  CG +  A++VF SM 
Sbjct: 553 ISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMP 612

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E++ VSWNS++     +G  +E+V L   MQ+   K D  TFL ++SAC HAG + +GL+
Sbjct: 613 EKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLR 672

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M  +  +  PR EH+  +V L  RAG L++A   I  M   P   ++ ALL AC+V
Sbjct: 673 LFRCMTEEYQIA-PRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRV 731

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N E+A  +++ +  L P++   YVL+SN++     WD    +R LM +  ++K PGYS
Sbjct: 732 HRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYS 791

Query: 305 WV 306
           WV
Sbjct: 792 WV 793



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 1/179 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + V+  +  R+ + WN ++ G+   GS   A++ F +MR +G + ++ T+   +    
Sbjct: 199 DARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSA 258

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
             S    G Q+H L  K G +S V V N LV MYA C  ++D  K+F  M   DLV+WN 
Sbjct: 259 TESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNG 318

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN 191
           ++ GC  +G+  +A+ LF  MQK+ I+PD  T + +L A       ++G + + Y++RN
Sbjct: 319 MISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRN 377



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 115/223 (51%), Gaps = 6/223 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +    Q+VY S +  + +  + +I+G+   G  ++A+K F  + + GI  +   I
Sbjct: 393 YFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAI 452

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   ++  K G+++H+   K  Y+   +V++ L+ MYA CG ++ ++ +FS +  
Sbjct: 453 ASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISA 512

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D V+WNS++   A +G   EA+ LF +M    +K    T   VLSAC     I  G + 
Sbjct: 513 KDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEI 572

Query: 186 FYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSM 226
             ++       P RA+ +  +A++ + G+ G L  A     SM
Sbjct: 573 HGVVIKG----PIRADLFAESALIDMYGKCGNLEWAHRVFESM 611



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 102/187 (54%), Gaps = 1/187 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   ++  +   + ++WN +I+G    G  +QAL  F +M+++GI  D  T+
Sbjct: 292 YAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTL 351

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A+  ++GF +GK++H  I +     +VF+ + LV +Y  C A+  A  V+ S   
Sbjct: 352 VSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKA 411

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            D+V  ++++ G   +G S+EAV++F  + +  I+P+      VL AC     +  G + 
Sbjct: 412 IDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQEL 471

Query: 185 YFYLMRN 191
           + Y ++N
Sbjct: 472 HSYALKN 478



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 2/146 (1%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           + WN +I G    G    AL  + +M    +    D  T   +V +   +     G+ +H
Sbjct: 110 LPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVH 169

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
                +G D ++FV + L+ MYA  G + DA +VF  M ERD V WN ++ G    G   
Sbjct: 170 RTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVS 229

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLS 171
            AV+LF  M+ +  +P+  T    LS
Sbjct: 230 SAVELFGDMRASGCEPNFATLACFLS 255



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 81  GKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD---LVSWNSLLL 136
           G Q+H      G + ++  +Q RLV MY +     DA  VFSS+        + WN L+ 
Sbjct: 58  GLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIR 117

Query: 137 GCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           G    G  R A+  + +M    +   PD  TF  V+ +C   G I  G
Sbjct: 118 GLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALG 165


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/291 (35%), Positives = 170/291 (58%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++++  +  R+ +SW A+I G+       +AL+ F EM+ + +  D FT+ S++ A   +
Sbjct: 209 RDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQL 268

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G+ +   + + G   + FV N L+ MY+ CG+I  A  VF  M  RD  +W +++
Sbjct: 269 GALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAII 328

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           LG A +GY  EA+++F +M +    PD  TF+ VL+AC HAG +DKG ++F  M    ++
Sbjct: 329 LGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNI 388

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
             P   HY  I+ LLGRAG + EA   I+ M   P  +++  LL+AC+VHGN EI    A
Sbjct: 389 -APNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVA 447

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +R+L+L P +  +Y+LLSN+    + W+D   +R  +  +GI+K+PG S +
Sbjct: 448 ERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLI 498



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 113/267 (42%), Gaps = 41/267 (15%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE---GKQM 84
           ++WNA+I+G    G   ++   F +M +AG      T  S++ A G   G ++   G Q+
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACG--KGTRDVLLGMQV 145

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H  +   G   ++ V+N LV MYA C  +  A KVF  M  R +VSW SLL G A  G  
Sbjct: 146 HGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQV 205

Query: 145 -------------------------------REAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
                                          REA+++F +MQ + +  D  T + V++AC
Sbjct: 206 DEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITAC 265

Query: 174 CHAGFIDKG-LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGP 232
              G ++ G     Y+ R    ++   A    A++ +  + G +  A      M      
Sbjct: 266 AQLGALEMGEWVRVYMSRQGIKMD---AFVGNALIDMYSKCGSIERALDVFKGMHHRD-K 321

Query: 233 SVYKALLSACQVHGNREIAVRSAKRVL 259
             + A++    V+G  E A+    R++
Sbjct: 322 FTWTAIILGLAVNGYEEEAIEMFHRMI 348



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S     +V+  +  R++ +W AII G    G  E+A++ F  M +     D  T 
Sbjct: 300 YSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTF 359

Query: 66  TSIVGAIGVISGFKEGKQMH-ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A        +G++   ++I       NV     ++ +    G I +A      M 
Sbjct: 360 IGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMP 419

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
              +   W +LL  C  HG S     + E++   E+ P+ +   ++LS
Sbjct: 420 MTPNSTIWGTLLAACRVHGNSEIGELVAERL--LELDPENSMVYILLS 465



 Score = 41.2 bits (95), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 44  EQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG----FKEGKQMHALIFKIGYDSNVFV 99
           E A+  ++ M   G   D +T  +++ A+   +G        + +HA + ++G   N  V
Sbjct: 1   EDAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHV 60

Query: 100 QNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
            + LV  Y   G    A  +    D    V+WN+L+ G    G   E+   F  M +   
Sbjct: 61  ASSLVAAYTAGGDGAAARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGA 118

Query: 160 KPDGTTFLVVLSAC 173
            P   T++ VLSAC
Sbjct: 119 APTPVTYVSVLSAC 132


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/289 (37%), Positives = 165/289 (57%), Gaps = 1/289 (0%)

Query: 16   QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
            + ++  +  ++ +SWN +IA + N     +A+  F +M    +D D  +I S++ A G +
Sbjct: 1249 KEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDL 1308

Query: 76   SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
            S    G+++H  + +     N+ ++N L+ MYA CG +  A +VF  M  RD+VSW S++
Sbjct: 1309 SALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMI 1368

Query: 136  LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
                 +G  R+AV LF +MQ   + PD   F+ VLSAC HAG +D+G  YF LM  +  +
Sbjct: 1369 SAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKI 1428

Query: 196  EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
              PR EH+  +V LLGRAG ++EA  FI  M   P   V+ ALLSAC+V+ N  I + +A
Sbjct: 1429 V-PRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAA 1487

Query: 256  KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
             ++  L P     YVLLSN+      W+D   +R++M  +GI+K PG S
Sbjct: 1488 DQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVS 1536



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 90/167 (53%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            Y+ C      ++++  +  +N + +N +I  + N      AL  F  M   GID D++T 
Sbjct: 1070 YAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTY 1129

Query: 66   TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              ++ A         G Q+HA + ++G D NVFV N L+ MY  CG + +A +V   M  
Sbjct: 1130 PCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPC 1189

Query: 126  RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            RD+VSWNSL+ GCA +G   +A+++ ++M+   +KPD  T   +L A
Sbjct: 1190 RDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA 1236



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 114/289 (39%), Gaps = 60/289 (20%)

Query: 3    ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
            I  Y +C   ++   V   +  R+ +SWN+++AG    G  + AL+   EM   G+  D 
Sbjct: 1168 ISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDA 1227

Query: 63   FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             T+ S++ A+                      +N  + N           ++   ++F  
Sbjct: 1228 GTMASLLPAV----------------------TNTCLDN-----------VSFVKEMFMK 1254

Query: 123  MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--------- 173
            +  + LVSWN ++    ++    EAV +F QM+   + PD  +   VL AC         
Sbjct: 1255 LANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLG 1314

Query: 174  --CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPG 231
               H   + K LQ   L+ N             A++ +  + G L  A    + M     
Sbjct: 1315 RRIHEYVVRKRLQPNLLLEN-------------ALIDMYAKCGCLEYAREVFDQMKFRDV 1361

Query: 232  PSVYKALLSACQVHGNREIAVRSAKRVLDLW--PNDPAIYVLLSNVSKA 278
             S + +++SA  ++G    AV    R+ DL   P+  A   +LS  S A
Sbjct: 1362 VS-WTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHA 1409



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 98/227 (43%), Gaps = 36/227 (15%)

Query: 82   KQMHALIFKIGYD--SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
            K++H+ I  I +D  SN  +  +L+  YA+CG       +F  + ++++V +N ++    
Sbjct: 1044 KKLHSKIC-IDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYV 1102

Query: 140  HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-----------HAGFIDKGLQYFYL 188
            ++    +A+ +F+ M    I PD  T+  VL A             HA  +  GL     
Sbjct: 1103 NNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVF 1162

Query: 189  MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALLSACQVHG 246
            + N              ++ + G+ G L EA   ++ M   P   V  + +L++ C  +G
Sbjct: 1163 VGN-------------GLISMYGKCGCLVEACRVLDZM---PCRDVVSWNSLVAGCARNG 1206

Query: 247  NREIAVRSAK--RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTL 291
              + A+   K   +L L P+   +  LL  V+    C D+   ++ +
Sbjct: 1207 QFDDALEVCKEMELLGLKPDAGTMASLLPAVTNT--CLDNVSFVKEM 1251


>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 518

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 183/307 (59%), Gaps = 2/307 (0%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           + I  Y++       + ++     ++ +SWNA+I G+       +AL+ F EM   G   
Sbjct: 209 VMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEMCGVGECP 268

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDS-NVFVQNRLVFMYAICGAINDANKV 119
           D  T+ S++ A   +   + G+++HA I ++     +  + N LV MYA CG I  A +V
Sbjct: 269 DEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKAVRV 328

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  + ++D+VSWNS++ G A HG++ E++ LF +M+ T++ PD  TF+ VL+AC HAG +
Sbjct: 329 FWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTFVGVLAACSHAGNV 388

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           D+G +YF+LM+N   +EP    H   +V +LGRAG L EA +FI SM   P   V+++LL
Sbjct: 389 DEGNRYFHLMKNKYKIEPT-IRHCGCVVDMLGRAGLLKEAFNFIASMKIEPNAIVWRSLL 447

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
            AC+VHG+ E+A R+ +++L +  +    YVLLSNV  +   WD A ++R LM + G+ K
Sbjct: 448 GACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYASQGEWDGAENVRKLMDDNGVTK 507

Query: 300 KPGYSWV 306
             G S+V
Sbjct: 508 NRGSSFV 514



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 126/295 (42%), Gaps = 24/295 (8%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++ +   +   WN  I G         A+  +++M Q  +  D FT   ++ A   +  
Sbjct: 63  MFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFW 122

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G  +H  + ++G+ SNV V+N L+  +A CG +  A  +F   D+ D+V+W++L+ G
Sbjct: 123 VNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAG 182

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A  G    A +LF++M K ++     ++ V+++     G ++   + F         E 
Sbjct: 183 YAQRGDLSVARKLFDEMPKRDL----VSWNVMITVYTKHGEMESARRLFD--------EA 230

Query: 198 PRAE--HYTAIVGLLGRAGFLNEAESFINSM---SRNPGPSVYKALLSACQVHGNREIAV 252
           P  +   + A++G         EA    + M      P      +LLSAC   G+ E   
Sbjct: 231 PMKDIVSWNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGE 290

Query: 253 RSAKRVLDLWPNDPAIYVLLSN--VSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           +   +++++  N   +  LL N  V     C +    +R       IR K   SW
Sbjct: 291 KVHAKIIEM--NKGKLSTLLGNALVDMYAKCGNIGKAVRVFWL---IRDKDVVSW 340



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 39/180 (21%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ +++C       +++      + ++W+A+IAG+   G    A K F EM +       
Sbjct: 149 LVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMPK------- 201

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
                                            ++   N ++ +Y   G +  A ++F  
Sbjct: 202 --------------------------------RDLVSWNVMITVYTKHGEMESARRLFDE 229

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              +D+VSWN+L+ G      +REA++LF++M      PD  T L +LSAC   G ++ G
Sbjct: 230 APMKDIVSWNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESG 289



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAIC--------GAINDANKVFSSMDERDLVSWNS 133
           KQ+HAL+   G  SNV    +LV   A+           I  A ++F+ + + D   WN+
Sbjct: 18  KQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDTFMWNT 77

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            + G +       AV L+ QM +  +KPD  TF  VL AC    +++ G
Sbjct: 78  YIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTG 126


>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
 gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
          Length = 551

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/289 (37%), Positives = 166/289 (57%), Gaps = 2/289 (0%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVISG 77
           + ++  RN +SWNA++AG+      + AL+ F  M R+A +  +  T++S++     +S 
Sbjct: 197 FEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSA 256

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              GKQ+H    K+    N+ V   LV MY  CG ++ A K+F  M  RD+V+WN+++ G
Sbjct: 257 LGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISG 316

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG  +EA+ LFE+M+   ++P+  TF+ VL+AC H G  D G++ F  M+    +E 
Sbjct: 317 YAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIE- 375

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           PR +HY+ +V LL RAG L  A   I SM   P PS Y  LL+AC+V+ N E A  +A +
Sbjct: 376 PRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGK 435

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++  P     YV L+N+    + WDD   +R  M +  + K PGYSW+
Sbjct: 436 LIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWI 484



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 117/252 (46%), Gaps = 23/252 (9%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + +++S+  R+ +SWN +++G    G+ E+A   F  M           + + V    ++
Sbjct: 100 RRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAM----------PVRNSVSWNAMV 149

Query: 76  SGFKEGKQMHAL--IFKIGYDS-NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           SGF   + M A    F+   +  +  +   +V  Y   G +  A + F +M  R+LVSWN
Sbjct: 150 SGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWN 209

Query: 133 SLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
           +++ G   + ++ +A++LF  M ++  ++P+ +T   VL  C +   +  G Q      +
Sbjct: 210 AVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQI-----H 264

Query: 192 DASLEPPRAEHY---TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
              ++ P + +    T++V +  + G L+ A      M        + A++S    HG+ 
Sbjct: 265 QWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEM-HTRDVVAWNAMISGYAQHGDG 323

Query: 249 EIAVRSAKRVLD 260
           + A+   +R+ D
Sbjct: 324 KEAINLFERMKD 335



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 38/66 (57%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C        ++  + TR+ ++WNA+I+G+   G G++A+  F  M+  G++ ++ T 
Sbjct: 286 YCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITF 345

Query: 66  TSIVGA 71
            +++ A
Sbjct: 346 VAVLTA 351



 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
           N L+  +   G  + A ++F+SM  RD+VSWN+++ G +  G   EA  +F  M
Sbjct: 84  NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAM 137


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 175/302 (57%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C   LD  + ++S +  +++++WN++I+ F   G  E+AL  F EM   G+     T
Sbjct: 494 YAKC-GRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVT 552

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I+S++ A   +     GK++H ++ K    +++F ++ L+ MY  CG +  A++VF SM 
Sbjct: 553 ISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMP 612

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E++ VSWNS++     +G  +E+V L   MQ+   K D  TFL ++SAC HAG + +GL+
Sbjct: 613 EKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLR 672

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M  +  +  PR EH+  +V L  RAG L++A   I  M   P   ++ ALL AC+V
Sbjct: 673 LFRCMTEEYQIA-PRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRV 731

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N E+A  +++ +  L P++   YVL+SN++     WD    +R LM +  ++K PGYS
Sbjct: 732 HRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYS 791

Query: 305 WV 306
           WV
Sbjct: 792 WV 793



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 136/262 (51%), Gaps = 7/262 (2%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + V+  +  R+ + WN ++ G+   GS   A++ F +MR +G + ++ T+   +    
Sbjct: 199 DARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSA 258

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
             S    G Q+H L  K G +S V V N LV MYA C  ++D  K+F  M   DLV+WN 
Sbjct: 259 TESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNG 318

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
           ++ GC  +G+  +A+ LF  MQK+ I+PD  T + +L A       ++G + + Y++RN 
Sbjct: 319 MISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNC 378

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
             ++       +A+V +  +   +  A+S  +S S+     +   ++S   ++G  + AV
Sbjct: 379 VHMD---VFLVSALVDIYFKCRAVRMAQSVYDS-SKAIDVVIGSTMISGYVLNGMSQEAV 434

Query: 253 RSAKRVLD--LWPNDPAIYVLL 272
           +  + +L+  + PN  AI  +L
Sbjct: 435 KMFRYLLEQGIRPNAVAIASVL 456



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +    Q+VY S +  + +  + +I+G+   G  ++A+K F  + + GI  +   I
Sbjct: 393 YFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAI 452

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   ++  K G+++H+   K  Y+   +V++ L+ MYA CG ++ ++ +FS +  
Sbjct: 453 ASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISA 512

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D V+WNS++   A +G   EA+ LF +M    +K    T   VLSAC     I  G + 
Sbjct: 513 KDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEI 572

Query: 186 FYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRN 229
             ++       P RA+ +  +A++ + G+ G L  A     SM   
Sbjct: 573 HGVVIKG----PIRADLFAESALIDMYGKCGNLEWAHRVFESMPEK 614



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 102/187 (54%), Gaps = 1/187 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   ++  +   + ++WN +I+G    G  +QAL  F +M+++GI  D  T+
Sbjct: 292 YAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTL 351

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A+  ++GF +GK++H  I +     +VF+ + LV +Y  C A+  A  V+ S   
Sbjct: 352 VSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKA 411

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            D+V  ++++ G   +G S+EAV++F  + +  I+P+      VL AC     +  G + 
Sbjct: 412 IDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQEL 471

Query: 185 YFYLMRN 191
           + Y ++N
Sbjct: 472 HSYALKN 478



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 2/146 (1%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           + WN +I G    G    AL  + +M    +    D  T   +V +   +     G+ +H
Sbjct: 110 LPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVH 169

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
                +G D ++FV + L+ MYA  G + DA +VF  M ERD V WN ++ G    G   
Sbjct: 170 RTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVS 229

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLS 171
            AV+LF  M+ +  +P+  T    LS
Sbjct: 230 SAVELFGDMRASGCEPNFATLACFLS 255



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 81  GKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD---LVSWNSLLL 136
           G Q+H      G + ++  +Q RLV MY +     DA  VFSS+        + WN L+ 
Sbjct: 58  GLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIR 117

Query: 137 GCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           G    G  R A+  + +M    +   PD  TF  V+ +C   G I  G
Sbjct: 118 GLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALG 165


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 174/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C        ++  +  +    WNAIIA     G GE+ALK    MR AGI+ D 
Sbjct: 507 ITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVRMRSAGIEFDQ 566

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F  ++ +     ++  +EG+Q+H    K+G++ + F+ N  + MY  CG ++DA ++   
Sbjct: 567 FNFSTALSVAADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKCGELDDALRILPQ 626

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             +R  +SWN+L+   A HG   +A + F  M K  +KP+  +F+ +LSAC H G +D+G
Sbjct: 627 PTDRSRLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLSACSHGGLVDEG 686

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L Y+  M +   ++P   EH   ++ LLGR+G L EAE+FI  M   P   V+++LL++C
Sbjct: 687 LAYYASMTSVYGIQPG-IEHCVCMIDLLGRSGRLVEAEAFITEMPIPPNDLVWRSLLASC 745

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +++ N ++  ++AK +L+L P+D + YVL SNV      W+D  D+R  M    I+KKP 
Sbjct: 746 RIYRNLDLGRKAAKHLLELDPSDDSAYVLYSNVFATIGRWEDVEDVRGQMGAHKIQKKPA 805

Query: 303 YSWV 306
           +SWV
Sbjct: 806 HSWV 809



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 87/167 (52%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q +++ +  RN +SW +++  + + GS ++ +  +  MR  GI  +   I  ++ + G +
Sbjct: 114 QKMFNEMPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFL 173

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G Q+     K G ++ V   N L+FM+  CG IN+A  +F+ M+ERD +SWNS++
Sbjct: 174 MDIILGHQLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSII 233

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              A +    E+ + F  M+    + + TT  ++LS C    ++  G
Sbjct: 234 SANAQNTLHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWG 280



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 129/285 (45%), Gaps = 21/285 (7%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-ID 61
           I  Y +C    + + V+  +   ++++WNA+I GF N     +A+  F  MR+     +D
Sbjct: 404 ITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVD 463

Query: 62  YFTITSIVGAIGVISGF-KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           Y TI +I+G+        K G  +HA     G+D +  VQ+ L+ MYA CG ++ ++ +F
Sbjct: 464 YITIVNILGSCLTHEDLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIF 523

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             +  +    WN+++   A +G+  EA++L  +M+   I+ D   F   LS       ++
Sbjct: 524 DQLVFKTSSVWNAIIAANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLE 583

Query: 181 KGLQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPS----- 233
           +G Q    +           +H+   A + + G+ G L++A   +      P P+     
Sbjct: 584 EGQQ----LHGSTIKLGFELDHFIINAAMDMYGKCGELDDALRIL------PQPTDRSRL 633

Query: 234 VYKALLSACQVHGNREIAVRSAKRVLDLW--PNDPAIYVLLSNVS 276
            +  L+S    HG    A  +   +L L   PN  +   LLS  S
Sbjct: 634 SWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLSACS 678



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 92/180 (51%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +  C    +  ++++ +  R+ ISWN+II+        E++ + F  MR    +I+Y
Sbjct: 202 IFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINY 261

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T++ ++   G +   K GK +H L  K G +SN+ + N L+ +Y+  G   DA  +F  
Sbjct: 262 TTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRR 321

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ERDL+SWNS+L      G    A+++F +M   + + +  TF   L+AC    F   G
Sbjct: 322 MPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNG 381



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q V+  +  RN+ SWN +++G+  +GS  +A+  F ++   GI    F I S+V A    
Sbjct: 12  QLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMIASLVTACNKS 71

Query: 76  SGF-KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           S   KEG Q H    K G   +VFV    V  YA  G +++A K+F+ M +R++VSW SL
Sbjct: 72  SIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSL 131

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI-DKGLQYFYLMRNDA 193
           ++  + +G  +E +  +++M+   I  +     +V+S+C   GF+ D  L +  L     
Sbjct: 132 MVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSC---GFLMDIILGHQLLGHALK 188

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
                +     +++ + G  G +NEA S  N M+     S + +++SA
Sbjct: 189 FGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTIS-WNSIISA 235



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 2/181 (1%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            YS    S D + ++  +  R+ ISWN+++A +   G    ALK F+EM     +I+Y T
Sbjct: 305 VYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVT 364

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            TS + A      F  GK +H  +  +G    + + N L+  Y  C  + +A KVF  M 
Sbjct: 365 FTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMP 424

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFLVVLSAC-CHAGFIDKG 182
           + D V+WN+L+ G A++    EAV  F+ M++      D  T + +L +C  H   I  G
Sbjct: 425 KLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYG 484

Query: 183 L 183
           +
Sbjct: 485 I 485



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
           MY+  G IN A  VF  M ER+  SWN ++ G    G   EAV  F  +    IKP G  
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 166 FLVVLSACCHAGFIDK-GLQY 185
              +++AC  +  + K G Q+
Sbjct: 61  IASLVTACNKSSIMAKEGFQF 81


>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 178/292 (60%), Gaps = 3/292 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++ +  +  +N ISWN+IIAG+      + A++ FS M+  G   D  T++S++     +
Sbjct: 357 KDFFERMPLKNLISWNSIIAGYEKNEDYKGAIQLFSRMQFEGERPDRHTLSSVMSVCTGL 416

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD-ERDLVSWNSL 134
                GKQ+H L+ KI    +  + N L+ MY+ CGAI DA  VF+ +   +D+++WN++
Sbjct: 417 VNLYLGKQIHQLVTKIVIPDSP-INNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAM 475

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + G A HG + EA++LF+ M++ +I P   TF+ V++AC HAG +++G + F  M ND  
Sbjct: 476 IGGYASHGLAAEALELFKLMKRLKIHPTYITFISVMNACAHAGLVEEGRRQFKSMINDYG 535

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           +E  R EH+ ++V +LGR G L EA   IN+M   P  +V+ ALLSAC+VH N E+A+ +
Sbjct: 536 IER-RVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAVWGALLSACRVHNNVELALVA 594

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           A  ++ L P   A YVLL N+      WDDA  +R LM  + ++K+ GYSWV
Sbjct: 595 ADALIRLEPESSAPYVLLYNIYANLGQWDDAESVRVLMEEKNVKKQAGYSWV 646



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 11/222 (4%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN +SWN+++  +   G    A + F  M    ++ D  +  +++     IS  +E  ++
Sbjct: 273 RNVVSWNSMMMCYVKAGDIVSARELFDRM----VEQDTCSWNTMISGYVQISNMEEASKL 328

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
               F+     +V   N +V  +A  G +N A   F  M  ++L+SWNS++ G   +   
Sbjct: 329 ----FREMPIPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEKNEDY 384

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
           + A+QLF +MQ    +PD  T   V+S C     +  G Q   L+     +  P +    
Sbjct: 385 KGAIQLFSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLV---TKIVIPDSPINN 441

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
           +++ +  R G + +A +  N +        + A++     HG
Sbjct: 442 SLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHG 483



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 76/147 (51%), Gaps = 18/147 (12%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G +++A  +F SM  RD V+WNS++ G  H      A QLF++M + ++     ++ +++
Sbjct: 53  GRLSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEMPRRDV----VSWNLIV 108

Query: 171 S---ACCHAGFIDKGLQYFYLMRNDASLEPPR-AEHYTAIVGLLGRAGFLNEAESFINSM 226
           S   +C  + F+++G + F LM       P R    +  ++    + G +++A    N+M
Sbjct: 109 SGYFSCRGSRFVEEGRRLFELM-------PQRDCVSWNTVISGYAKNGRMDQALKLFNAM 161

Query: 227 -SRNPGPSVYKALLSACQVHGNREIAV 252
             RN   S   AL++   ++G+ + AV
Sbjct: 162 PERNAVSS--NALITGFLLNGDVDSAV 186



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 118/279 (42%), Gaps = 30/279 (10%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ S++ R+ ++WN++I G+ +     +A + F EM +  + + +  I S   +      
Sbjct: 61  LFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEMPRRDV-VSWNLIVSGYFSCRGSRF 119

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            +EG+++    F++    +    N ++  YA  G ++ A K+F++M ER+ VS N+L+ G
Sbjct: 120 VEEGRRL----FELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPERNAVSSNALITG 175

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN-DASLE 196
              +G    AV  F  M +       T+   ++S     G +D          N D  L 
Sbjct: 176 FLLNGDVDSAVDFFRTMPEHY----STSLSALISGLVRNGELDMAAGILCECGNGDDDL- 230

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGP----------------SVYKALLS 240
                 Y  ++   G+ G + EA    + +  + G                 S+    + 
Sbjct: 231 ---VHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMMMCYVK 287

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKAT 279
           A  +   RE+  R  ++    W    + YV +SN+ +A+
Sbjct: 288 AGDIVSARELFDRMVEQDTCSWNTMISGYVQISNMEEAS 326


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 167/289 (57%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ +SWN++IAGF   G    ALK F+ M   G   D  +    + +   I+ 
Sbjct: 372 IFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSCATIAA 431

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G Q+H ++ K GY + + V N L+ MYA CG I +A  VF+ +   D++SWNSL+ G
Sbjct: 432 LQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGLVFNGICHADVISWNSLIGG 491

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +GY +EA++LFE+M    + PD  TF+ +LSAC HAG +D GL+ F  M    ++EP
Sbjct: 492 YAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMSKVYAIEP 551

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
             AEHY  +V LLGR G L+EA   +  M       V+ ALL AC+ HGN E+   +A +
Sbjct: 552 L-AEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACRAHGNLELGRLAAHK 610

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +  P+  + YVLLSN+    + W++  ++R LM      K+PG SWV
Sbjct: 611 LSEFEPHKTSNYVLLSNIHAEANRWNEVQEVRMLMNASSTVKEPGCSWV 659



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 94/184 (51%), Gaps = 12/184 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           ++R  + L+ + ++  + +RN +SWNA+I+ +      ++A + F EM +     D  + 
Sbjct: 205 FARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPER----DSVSW 260

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++     I    E ++   L+ ++ Y  N+  Q  ++  Y  C  +++A + F  +  
Sbjct: 261 TTMINGYVRIGKLDEARE---LLNEMPY-RNIGAQTAMISGYIQCNKVDEARRFFDEIGT 316

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+V WN+++ G AHHG   EA+ L ++M    +  D  T+  ++S     G +D+ ++ 
Sbjct: 317 WDVVCWNAMIAGYAHHGRINEALCLSKRM----VNKDMVTWNTMISCYAQVGQMDRAVKI 372

Query: 186 FYLM 189
           F  M
Sbjct: 373 FEEM 376



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 24/200 (12%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGID------ 59
           RC+   +   ++  +  R+ +SW  +I G+  +G  ++A +  +EM  R  G        
Sbjct: 239 RCEID-EASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISG 297

Query: 60  -------------IDYFTITSIVGAIGVISGF-KEGKQMHAL-IFKIGYDSNVFVQNRLV 104
                         D      +V    +I+G+   G+   AL + K   + ++   N ++
Sbjct: 298 YIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMI 357

Query: 105 FMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164
             YA  G ++ A K+F  M ERDLVSWNSL+ G   +G + +A++ F  M     KPD  
Sbjct: 358 SCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQL 417

Query: 165 TFLVVLSACCHAGFIDKGLQ 184
           +F   LS+C     +  G Q
Sbjct: 418 SFACGLSSCATIAALQVGNQ 437



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 99/215 (46%), Gaps = 16/215 (7%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +N++  +  RN +SWN +++G+ + G  ++A K F  M +     D F+ T ++      
Sbjct: 26  RNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRR----DLFSWTLMITCYTRN 81

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              ++ +++   +    Y   V   N ++  Y   G +N+A ++F  M  ++L+SWNS+L
Sbjct: 82  GEVEKARELFDSL-PCSYRKGVACWNAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSML 140

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G   +   R  ++ F +M + ++     ++ +++      G +D   ++F         
Sbjct: 141 AGYTQNRKMRLGLEFFNEMDERDV----VSWNLMVDGFIQVGDLDSAWKFF------QET 190

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSM-SRN 229
           + P    +  ++    R G + E+    + M SRN
Sbjct: 191 QKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRN 225



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 12/138 (8%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           ++ +  R+ +SWN ++ GF  +G  + A K F E ++           ++V  + ++SGF
Sbjct: 156 FNEMDERDVVSWNLMVDGFIQVGDLDSAWKFFQETQKP----------NVVSWVTMLSGF 205

Query: 79  -KEGKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            + G  + +  +F      N+   N ++  Y     I++A+++F  M ERD VSW +++ 
Sbjct: 206 ARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPERDSVSWTTMIN 265

Query: 137 GCAHHGYSREAVQLFEQM 154
           G    G   EA +L  +M
Sbjct: 266 GYVRIGKLDEARELLNEM 283



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 6/172 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C   L+   V++ +   + ISWN++I G+   G G++ALK F EM   G+  D 
Sbjct: 458 ITMYAKCGRILEAGLVFNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDE 517

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVF 120
            T   I+ A         G ++   + K+ Y      ++   +V +    G +++A ++ 
Sbjct: 518 VTFIGILSACNHAGMVDHGLKLFKCMSKV-YAIEPLAEHYACMVDLLGRVGRLDEAFEIV 576

Query: 121 SSMDERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             M  +     W +LL  C  HG + E  +L    + +E +P  T+  V+LS
Sbjct: 577 RGMKVKATAGVWGALLGACRAHG-NLELGRLAAH-KLSEFEPHKTSNYVLLS 626



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           + N    N ++ +YA  G IN A  +F  M  R+LVSWN+++ G  H+G   EA +LF  
Sbjct: 3   EKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVI 62

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
           M + ++     ++ ++++     G ++K  + F
Sbjct: 63  MPRRDL----FSWTLMITCYTRNGEVEKARELF 91



 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 20/145 (13%)

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E++ V++NS++   A +G    A  LF++M +  +     ++  ++S   H G  D+ 
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNL----VSWNTMVSGYLHNGKFDEA 56

Query: 183 LQYFYLMRNDASLEPPRAE--HYTAIVGLLGRAGFLNEAESFINSM--SRNPGPSVYKAL 238
            + F +M        PR +   +T ++    R G + +A    +S+  S   G + + A+
Sbjct: 57  YKLFVIM--------PRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAM 108

Query: 239 LSACQVHGNREIAVRSAKRVLDLWP 263
           +S     G     V  AKR+ D  P
Sbjct: 109 ISGYVKKGR----VNEAKRLFDEMP 129


>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 544

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 175/306 (57%), Gaps = 6/306 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +   + + + V+  + TRN ++WNA+IAG+  +G  EQAL+ F  M Q  +  D 
Sbjct: 224 VTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDE 283

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ A   +   ++GK++H  I +     N FV N L+ MYA CG +  A  +F S
Sbjct: 284 FTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDS 343

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  ++   WN+++   A HG S EA+ LF QM+++  KP+  T L VL AC H GF+D+G
Sbjct: 344 MRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEG 403

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           LQ F  +  DA       EHY  +V LLGRAG L EA   +N+MS  P   ++ +LL AC
Sbjct: 404 LQIFNKL--DAYGVEAGVEHYGCLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGSLLGAC 461

Query: 243 QVHGNREIAVRSAKRVLDLW----PNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
           +VH + E++    + +L L      ++ A Y++L+N+  A++ W+ A  +R  M  RG+ 
Sbjct: 462 RVHRDAEMSRLVTEEILRLHSFHASSNDAEYIMLANIMAASERWEQAEQMRRKMARRGVE 521

Query: 299 KKPGYS 304
           K PG S
Sbjct: 522 KTPGCS 527



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 118/275 (42%), Gaps = 34/275 (12%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +  D +  +  +  RN IS+NA++AG+   G  + AL  F  MR +   + + T+
Sbjct: 101 YCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMDGALALFGGMR-SWTHVTWATL 159

Query: 66  T------------------------SIVGAIGVISGFKEGKQMHAL--IFKIGYDSNVFV 99
                                    ++V    ++ G+     M     +F      N FV
Sbjct: 160 IRGFAEKGDMAEARRWFEATPPGMRTVVTWTVLVQGYVCAGDMETAREVFDRMPARNAFV 219

Query: 100 QNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
            + +V  Y   G   +A  VF  +  R+LV+WN+L+ G A  G S +A++ F  M +  +
Sbjct: 220 WSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERV 279

Query: 160 KPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT--AIVGLLGRAGFLN 217
           KPD  T   +LSAC   G +++G +    +      E  R  H+    ++ +  + G L 
Sbjct: 280 KPDEFTMASLLSACAQLGSLEQGKKVHDFINQ----EHIRKNHFVMNGLIDMYAKCGDLA 335

Query: 218 EAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            A    +SM R      +  ++SA   HG  + A+
Sbjct: 336 HARYIFDSM-RWKNNECWNTMISALASHGQSDEAL 369



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK +HA   K  +  ++ V   +V MY  CGA+ DA + F  M +R+++S+N+LL G A 
Sbjct: 75  GKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAV 134

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            G    A+ LF  M+         ++  V  A    GF +KG
Sbjct: 135 AGDMDGALALFGGMR---------SWTHVTWATLIRGFAEKG 167


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 180/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D +  +  V+  + + W +II G+   G  E  L  + +M+   +  +  T+
Sbjct: 365 YAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTM 424

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   ++   +GKQMHA I K G+   V + + L  MY  CG+++D   +F  M  
Sbjct: 425 ASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPS 484

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD++SWN+++ G + +G+  +A++LFE+M    IKPD  TF+ +LSAC H G +D+G +Y
Sbjct: 485 RDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEY 544

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M ++ ++  P  EHY  +V +L RAG LNEA+ FI S + + G  +++ LL AC+ H
Sbjct: 545 FKMMFDEFNI-APMVEHYACMVDILSRAGKLNEAKEFIESATVDHGLCLWRILLGACKNH 603

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+ V + +++++L   + + YVLLS++  A    ++   +R +M  RG+ K+PG SW
Sbjct: 604 RNYELGVYAGEKLVELGSPESSAYVLLSSIYTALGDRENVERVRRIMKARGVNKEPGCSW 663

Query: 306 V 306
           +
Sbjct: 664 I 664



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 141/280 (50%), Gaps = 13/280 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++C S  D    +     +N I+W+A++ G+   G  ++ALK F++M  +G+    
Sbjct: 261 VTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSE 320

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+  ++ A   +    EGKQMH+  FK+G+   ++V + +V MYA CG++ DA K F  
Sbjct: 321 FTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFEC 380

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + + D+V W S++ G   +G     + L+ +MQ   + P+  T   VL AC     +D+G
Sbjct: 381 VQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQG 440

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALL 239
            Q +  +++    LE P     +A+  +  + G L++         R P   V  + A++
Sbjct: 441 KQMHARIIKYGFKLEVPIG---SALSAMYTKCGSLDDGYLIF---WRMPSRDVISWNAMI 494

Query: 240 SACQV--HGNREIAVRSAKRVLDLWPNDPAIYV-LLSNVS 276
           S      HGN+ + +   K +L+    DP  +V LLS  S
Sbjct: 495 SGLSQNGHGNKALELFE-KMLLEGIKPDPVTFVNLLSACS 533



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 99/179 (55%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +     D + ++  +  RN +SW  +I+G+ +    ++A++ F  MR+     + F +
Sbjct: 163 YCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFAL 222

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A+        G+Q+H+L  K G  + V V N LV MYA CG+++DA + F    +
Sbjct: 223 TSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGD 282

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++ ++W++++ G A  G S +A++LF +M  + + P   T + V++AC     + +G Q
Sbjct: 283 KNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQ 341



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 6/199 (3%)

Query: 25  RNQISWNAIIAGFCN---LGSGEQALKCFSEMRQAGIDI-DYFTITSIVGAIGVISGFKE 80
           ++ +SWN++I  F       S   A+  F  M +A   I +  T+  +  A   +S    
Sbjct: 77  KDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVA 136

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GKQ H++  K G   +V+V + L+ MY   G + DA K+F  M ER+ VSW +++ G A 
Sbjct: 137 GKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYAS 196

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRA 200
              + +AV++FE M++ E   +      VLSA     F+  G Q   L   +  L     
Sbjct: 197 SDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSV 256

Query: 201 EHYTAIVGLLGRAGFLNEA 219
            +  A+V +  + G L++A
Sbjct: 257 AN--ALVTMYAKCGSLDDA 273



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 6/111 (5%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM--DERDLVSWNSLLLG 137
           +G+ +HA I K G  S+++V N  + +YA    ++ A  +F S+  +++D VSWNSL+  
Sbjct: 29  KGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINA 88

Query: 138 CAHHGYSRE---AVQLFEQMQKT-EIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            + +  S     A+ LF +M +   + P+  T   V SA  +   +  G Q
Sbjct: 89  FSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQ 139


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 177/301 (58%), Gaps = 2/301 (0%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            Y++C S  +   V+S +  ++ +SWN +I G+       +ALK F+EM++     D  T+
Sbjct: 800  YAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITM 858

Query: 66   TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              ++ A G ++  + G+ +H  I + GY S + V N L+ MY  CG++  A  +F  + E
Sbjct: 859  ACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPE 918

Query: 126  RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            +DL++W  ++ GC  HG   EA+  F++M+   IKPD  TF  +L AC H+G +++G  +
Sbjct: 919  KDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGF 978

Query: 186  FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            F  M ++ ++E P+ EHY  +V LL R G L++A + I +M   P  +++ ALL  C++H
Sbjct: 979  FNSMISECNME-PKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIH 1037

Query: 246  GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
             + E+A + A+ V +L P++   YVLL+N+    + W++   +R  +  RG++K PG SW
Sbjct: 1038 HDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSW 1097

Query: 306  V 306
            +
Sbjct: 1098 I 1098



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 135/270 (50%), Gaps = 8/270 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C +  D    +  +  +  +SW ++IA +   G  + A++ F EM   G+  D +++
Sbjct: 699 YSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSM 758

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A    +   +G+ +H  I K      + V N L+ MYA CG++ +A  VFS +  
Sbjct: 759 TSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPV 818

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D+VSWN+++ G + +    EA++LF +MQK E +PDG T   +L AC     ++ G   
Sbjct: 819 KDIVSWNTMIGGYSKNSLPNEALKLFAEMQK-ESRPDGITMACLLPACGSLAALEIGRGI 877

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +  ++RN  S E   A    A++ +  + G L  A    + M        +  ++S C +
Sbjct: 878 HGCILRNGYSSELHVA---NALIDMYVKCGSLVHARLLFD-MIPEKDLITWTVMISGCGM 933

Query: 245 H--GNREIAVRSAKRVLDLWPNDPAIYVLL 272
           H  GN  IA     R+  + P++     +L
Sbjct: 934 HGLGNEAIATFQKMRIAGIKPDEITFTSIL 963



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 4/218 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I TY +         ++  +  R+ +SWN++I+G    G    AL+ F +M    + +D 
Sbjct: 595 IATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDL 654

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ + V A   +     G+ +H    K  +   V   N L+ MY+ CG +NDA + F  
Sbjct: 655 ATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEK 714

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ++ +VSW SL+      G   +A++LF +M+   + PD  +   VL AC     +DKG
Sbjct: 715 MGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKG 774

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
              + Y+ +N+ +L  P +    A++ +  + G + EA
Sbjct: 775 RDVHNYIRKNNMALCLPVS---NALMDMYAKCGSMEEA 809



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 99/181 (54%), Gaps = 1/181 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQI-SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           +  Y  C +  + + ++  + + N++  WN +++ +  +G   +++  F +M++ GI  +
Sbjct: 493 VFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGN 552

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +T + I+     +    E K++H  ++K+G+ S   V N L+  Y   G ++ A+K+F 
Sbjct: 553 SYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFD 612

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + +RD+VSWNS++ GC  +G+S  A++ F QM    +  D  T +  ++AC + G +  
Sbjct: 613 ELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSL 672

Query: 182 G 182
           G
Sbjct: 673 G 673



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 11  SSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVG 70
           S LD     + V    ++  N  I  FC +G    A++     +++ +D++ ++  SI+ 
Sbjct: 402 SYLDVPRSSTRVGAFAKLDENTKICKFCEVGDLRNAVELLRMSQKSELDLNAYS--SILQ 459

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS-MDERDLV 129
                   +EGK +H++I   G      +  +LVFMY  CGA+ +  ++F   + +  + 
Sbjct: 460 LCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVF 519

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
            WN ++   A  G  RE++ LF++MQK  I  +  TF  +L
Sbjct: 520 LWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCIL 560


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 177/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      +  + +   +  +SW A+I G    G  E+AL+ F  MR+AG+  D  T 
Sbjct: 386 YSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATF 445

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S + A   ++    G+Q+H+ + + G+ S+VF  + L+ MY  CG +++A + F  M E
Sbjct: 446 SSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPE 505

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ +SWN+++   AH+G ++ A+++FE M     KPD  TFL VLSAC H G  ++ ++Y
Sbjct: 506 RNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKY 565

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM  +  + P + EHY+ ++  LGR G  ++ +  +  M     P ++ ++L +C+ H
Sbjct: 566 FELMEYEYGISPWK-EHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTH 624

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN+++A  +A+++  +   D   YV+LSN+      W+DA  ++ +M +RG+RK+ GYSW
Sbjct: 625 GNQDLARVAAEKLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSW 684

Query: 306 V 306
           V
Sbjct: 685 V 685



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 122/249 (48%), Gaps = 5/249 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+CD   + + ++  +  R+ +S+N +IAG+         L+ F EM+    D      
Sbjct: 285 YSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPY 344

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++   G +     GKQ+HA +  +G  S   V N L+ MY+ CG ++ A   F + ++
Sbjct: 345 ASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKND 404

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +  VSW +++ GC  +G   EA+QLF  M++  + PD  TF   + A  +   I  G Q 
Sbjct: 405 KTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQL 464

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + YL+R   S         +A++ +  + G L+EA    + M      S + A++SA   
Sbjct: 465 HSYLIR---SGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSIS-WNAVISAYAH 520

Query: 245 HGNREIAVR 253
           +G  + A++
Sbjct: 521 YGQAKNAIK 529



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 121/250 (48%), Gaps = 28/250 (11%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ +++NA++ G    GS  +AL  F+ MR+ G+    FT ++++     +
Sbjct: 195 RRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGV 254

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+H L+ +    SNVFV N L+  Y+ C  +++  K+F  M ERD VS+N ++
Sbjct: 255 GDLCLGRQVHGLVAR-ATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMI 313

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----------CHAGFIDKGLQ 184
            G A +  +   ++LF +MQ          +  +LS              HA  +  GL 
Sbjct: 314 AGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLS 373

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES-FINSMSRNPGPSVYKALLSACQ 243
              L+ N             A++ +  + G L+ A++ FIN   +  G S + A+++ C 
Sbjct: 374 SEDLVGN-------------ALIDMYSKCGMLDAAKTNFINKNDKT-GVS-WTAMITGCV 418

Query: 244 VHGNREIAVR 253
            +G +E A++
Sbjct: 419 QNGQQEEALQ 428



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 20  SSVRTRNQISWNAIIAGFCNL--GSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           S    R+ ++W  +I  F +        A+  F +M + G+  D  T+ +++       G
Sbjct: 92  SPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGG 151

Query: 78  FKEG---KQMHALIFKIGY-DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
                    +H    K+G   SNV V N L+  Y   G +  A +VF  M  RD V++N+
Sbjct: 152 TAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNA 211

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++GC+  G   EA+ LF  M++  +     TF  VL+     G +  G Q
Sbjct: 212 MMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQ 262



 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDLVSWNSLL--LGC 138
           Q  AL  ++ + +N F  NR++  Y+  G ++ A+ +F S     RD V+W  ++     
Sbjct: 52  QARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFAS 111

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           A    + +AV LF  M +  + PD  T   VL+
Sbjct: 112 APGARASDAVSLFRDMLREGVAPDRVTVATVLN 144


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 175/302 (57%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+   + + ++ S+  R  +SW A+I+G+   G     LK F++MR + +  D  T 
Sbjct: 396 YAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTF 455

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A    +    GKQ+HA I + G   NVF  + LV MYA CG+I DA +VF  M +
Sbjct: 456 ATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPD 515

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+ VSWN+L+   A +G    A+  F +M ++ ++PD  + L VL+AC H GF+++G +Y
Sbjct: 516 RNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEY 575

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M     +  P+ +HY  ++ LLGR G   EAE  ++ M   P   ++ ++L+AC++H
Sbjct: 576 FQAMSPIYGI-TPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIH 634

Query: 246 GNREIAVRSAKRVLDLWP-NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
            N+ +A R+A+++  +    D A YV +SN+  A   W+   D++  M  RGI+K P YS
Sbjct: 635 KNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYS 694

Query: 305 WV 306
           WV
Sbjct: 695 WV 696



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 131/278 (47%), Gaps = 6/278 (2%)

Query: 2   QILT-YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           QIL  YS+ D  L+ + ++  +   + +S+N +I+ +      E +L  F EM+  G D 
Sbjct: 290 QILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDR 349

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
             F   +++     +S  + G+Q+H        DS + V N LV MYA C    +A  +F
Sbjct: 350 RNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIF 409

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            S+ +R  VSW +L+ G    G     ++LF +M+ + ++ D +TF  VL A      + 
Sbjct: 410 KSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLL 469

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
            G Q    +    +LE       + +V +  + G + +A      M      S + AL+S
Sbjct: 470 LGKQLHAFIIRSGNLE--NVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVS-WNALIS 526

Query: 241 ACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVS 276
           A   +G+ E A+ +  ++++  L P+  +I  +L+  S
Sbjct: 527 AHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 2/184 (1%)

Query: 3   ILTYSRCD-SSLDFQNV-YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           +L  S C+   LD   V +  +  ++ +++N +I G+   G   +++  F +MRQ+G   
Sbjct: 189 VLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQP 248

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
             FT + ++ A+  +  F  G+Q+HAL    G+  +  V N+++  Y+    + +   +F
Sbjct: 249 SDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLF 308

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M E D VS+N ++   +       ++  F +MQ          F  +LS   +   + 
Sbjct: 309 DEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQ 368

Query: 181 KGLQ 184
            G Q
Sbjct: 369 MGRQ 372



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDI-DYFTITSIVGAIG 73
           ++++ ++  R  ++W  ++  +      ++A K F +M R +   + D+ T T+++    
Sbjct: 99  RDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCN 158

Query: 74  VISGFKEGKQMHALIFKIGYDSNVF--VQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
                    Q+HA   K+G+D+N F  V N L+  Y     ++ A  +F  + E+D V++
Sbjct: 159 DAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTF 218

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           N+L+ G    G   E++ LF +M+++  +P   TF  VL A
Sbjct: 219 NTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259



 Score = 40.8 bits (94), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F + +++ A I K G+D++    N +V      G ++ A KV+  M  ++ VS N+++ G
Sbjct: 29  FLDTRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISG 88

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGT--TFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
               G    A  LF+ M      PD T  T+ +++         D+  + F  M   +S 
Sbjct: 89  HVKTGDVSSARDLFDAM------PDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSC 142

Query: 196 EPPRAEHYTAIV 207
             P    +T ++
Sbjct: 143 TLPDHVTFTTLL 154


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 185/301 (61%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +  D + V+  +  R+ ++W+A+IAG+   G   +AL+ F  M+ A I  +  T+
Sbjct: 273 YVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTL 332

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +   + G+++ + +   G  SNV+V + L+ MY+ CG I  A ++F  + +
Sbjct: 333 VSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQ 392

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD V+WNS+++G A +G++ +A+ L+ +M++ E+KP+  TF+ +++AC HAG ++ GL++
Sbjct: 393 RDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEF 452

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  MR+D ++  P  EH+  IV L  R+G L +A  FI  M   P   ++  LLSA ++H
Sbjct: 453 FRSMRSDHNIS-PNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIH 511

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+A  + K++L+L P++   YV+LSN+  +   W +A  +R LM ++ ++K   YSW
Sbjct: 512 LNVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQKAAAYSW 571

Query: 306 V 306
           V
Sbjct: 572 V 572



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 139/278 (50%), Gaps = 5/278 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSR    L  + ++  +R R+ +SWNA+I+ +   G   +    F  M+    + + 
Sbjct: 169 ISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNE 228

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ +++     +   + G ++  L       SN+ V   ++ MY  CGA++D   VF  
Sbjct: 229 ITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDH 288

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD+V+W++++ G A +G S EA++LFE M+  +IKP+  T + VLSAC   G ++ G
Sbjct: 289 MARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETG 348

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +    + +   +        +A++G+  + G + +A    + + +    + + +++   
Sbjct: 349 ERIGSYVESRGLISNVYVA--SALLGMYSKCGNIIKARQIFDKLPQRDNVT-WNSMIMGL 405

Query: 243 QVHGNRE--IAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
            ++G  E  IA+ +  + +++ PN+     L++  + A
Sbjct: 406 AINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHA 443



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 124/291 (42%), Gaps = 36/291 (12%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +   +Q    + I  +  L    +AL+ F  M Q  + I  FTI  I  +   +
Sbjct: 50  RQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASL 109

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC------------------------- 110
                GKQ+H+L+ + G+ S+VF QN L+  YA                           
Sbjct: 110 LAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLI 169

Query: 111 ------GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164
                 G +  A ++F  M +R +VSWN+++   A +G   +   +F++MQ    +P+  
Sbjct: 170 SAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEI 229

Query: 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
           T   VLS C   G ++ GL+   L  ND           TA++ +  + G +++     +
Sbjct: 230 TLATVLSICAKLGDLEMGLRIKKL--NDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFD 287

Query: 225 SMSRNPGPSVYKALLSACQVHG--NREIAVRSAKRVLDLWPNDPAIYVLLS 273
            M+R    + + A+++    +G  N  + +    +   + PND  +  +LS
Sbjct: 288 HMARRDVVT-WSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLS 337


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/289 (37%), Positives = 166/289 (57%), Gaps = 2/289 (0%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVISG 77
           + ++  RN +SWNA++AG+      + AL+ F  M R+A +  +  T++S++     +S 
Sbjct: 197 FEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSA 256

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              GKQ+H    K+    N+ V   LV MY  CG ++ A K+F  M  RD+V+WN+++ G
Sbjct: 257 LGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISG 316

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG  +EA+ LFE+M+   ++P+  TF+ VL+AC H G  D G++ F  M+    +E 
Sbjct: 317 YAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIE- 375

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           PR +HY+ +V LL RAG L  A   I SM   P PS Y  LL+AC+V+ N E A  +A +
Sbjct: 376 PRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGK 435

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++  P     YV L+N+    + WDD   +R  M +  + K PGYSW+
Sbjct: 436 LIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWI 484



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 117/252 (46%), Gaps = 23/252 (9%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + +++S+  R+ +SWN +++G    G+ E+A   F  M           + + V    ++
Sbjct: 100 RRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAM----------PVRNSVSWNAMV 149

Query: 76  SGFKEGKQMHAL--IFKIGYDS-NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           SGF   + M A    F+   +  +  +   +V  Y   G +  A + F +M  R+LVSWN
Sbjct: 150 SGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWN 209

Query: 133 SLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
           +++ G   + ++ +A++LF  M ++  ++P+ +T   VL  C +   +  G Q      +
Sbjct: 210 AVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQI-----H 264

Query: 192 DASLEPPRAEHY---TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
              ++ P + +    T++V +  + G L+ A      M        + A++S    HG+ 
Sbjct: 265 QWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEM-HTRDVVAWNAMISGYAQHGDG 323

Query: 249 EIAVRSAKRVLD 260
           + A+   +R+ D
Sbjct: 324 KEAINLFERMKD 335



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 38/66 (57%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C        ++  + TR+ ++WNA+I+G+   G G++A+  F  M+  G++ ++ T 
Sbjct: 286 YCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITF 345

Query: 66  TSIVGA 71
            +++ A
Sbjct: 346 VAVLTA 351



 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
           N L+  +   G  + A ++F+SM  RD+VSWN+++ G +  G   EA  +F  M
Sbjct: 84  NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAM 137


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/289 (37%), Positives = 166/289 (57%), Gaps = 2/289 (0%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVISG 77
           + ++  RN +SWNA++AG+      + AL+ F  M R+A +  +  T++S++     +S 
Sbjct: 246 FEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSA 305

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              GKQ+H    K+    N+ V   LV MY  CG ++ A K+F  M  RD+V+WN+++ G
Sbjct: 306 LGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISG 365

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG  +EA+ LFE+M+   ++P+  TF+ VL+AC H G  D G++ F  M+    +E 
Sbjct: 366 YAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIE- 424

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           PR +HY+ +V LL RAG L  A   I SM   P PS Y  LL+AC+V+ N E A  +A +
Sbjct: 425 PRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGK 484

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++  P     YV L+N+    + WDD   +R  M +  + K PGYSW+
Sbjct: 485 LIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWI 533



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 117/252 (46%), Gaps = 23/252 (9%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + +++S+  R+ +SWN +++G    G+ E+A   F  M           + + V    ++
Sbjct: 149 RRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAM----------PVRNSVSWNAMV 198

Query: 76  SGFKEGKQMHAL--IFKIGYDS-NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           SGF   + M A    F+   +  +  +   +V  Y   G +  A + F +M  R+LVSWN
Sbjct: 199 SGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWN 258

Query: 133 SLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
           +++ G   + ++ +A++LF  M ++  ++P+ +T   VL  C +   +  G Q      +
Sbjct: 259 AVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQI-----H 313

Query: 192 DASLEPPRAEHY---TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
              ++ P + +    T++V +  + G L+ A      M        + A++S    HG+ 
Sbjct: 314 QWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMISGYAQHGDG 372

Query: 249 EIAVRSAKRVLD 260
           + A+   +R+ D
Sbjct: 373 KEAINLFERMKD 384



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 38/66 (57%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C        ++  + TR+ ++WNA+I+G+   G G++A+  F  M+  G++ ++ T 
Sbjct: 335 YCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITF 394

Query: 66  TSIVGA 71
            +++ A
Sbjct: 395 VAVLTA 400



 Score = 38.1 bits (87), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
           N L+  +   G  + A ++F+SM  RD+VSWN+++ G +  G   EA  +F  M
Sbjct: 133 NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAM 186


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/289 (37%), Positives = 168/289 (58%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ ++R +N +SWN++IAGF        ALK    M + G   D  T    + A   ++ 
Sbjct: 412 IFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAA 471

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G Q+H  I K GY +++FV N L+ MYA CG +  A +VF  ++  DL+SWNSL+ G
Sbjct: 472 LQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISG 531

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +GY+ +A + FEQM    + PD  TF+ +LSAC HAG  ++GL  F  M  D ++E 
Sbjct: 532 YALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIE- 590

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P AEHY+ +V LLGR G L EA + +  M       ++ +LL AC+VH N E+   +A+R
Sbjct: 591 PLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAER 650

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +L P++ + Y+ LSN+      W++   +R LM  +   K+PG SW+
Sbjct: 651 LFELEPHNASNYITLSNMHAEAGRWEEVERVRMLMRGKRAGKQPGCSWI 699



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 99/213 (46%), Gaps = 17/213 (7%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  +  RN +SWN +IAG+ +    E+A + F  M +     D F+   ++    
Sbjct: 66  DARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPER----DNFSWALMITCYT 121

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
                ++ +++  L+     D+  +  N ++  YA  G  NDA KVF  M  +DLVS+NS
Sbjct: 122 RKGKLEKARELLELV-PDKLDTACW--NAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNS 178

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           +L G   +G    A+Q FE M +  +     ++ ++++    +G +    Q F  + N  
Sbjct: 179 MLAGYTQNGKMHLALQFFESMTERNV----VSWNLMVAGYVKSGDLSSAWQLFEKIPN-- 232

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
               P A  +  ++  L + G + EA    + M
Sbjct: 233 ----PNAVSWVTMLCGLAKYGKMAEARELFDRM 261



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 97/198 (48%), Gaps = 24/198 (12%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR---------------QAGIDIDY 62
           ++  +  ++ +SW  II G+  +G  ++A + +++M                Q G   + 
Sbjct: 288 LFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEA 347

Query: 63  FTITSIVGAIGV------ISGF-KEGKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAIN 114
             + S +GA  V      I+G+ + G+   AL +F+     N    N ++  YA  G ++
Sbjct: 348 DQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMD 407

Query: 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
            A ++F +M E+++VSWNSL+ G   +    +A++    M K   KPD +TF   LSAC 
Sbjct: 408 RATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACA 467

Query: 175 HAGFIDKGLQ-YFYLMRN 191
           +   +  G Q + Y++++
Sbjct: 468 NLAALQVGNQLHEYILKS 485



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 22/199 (11%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI- 88
           WNA+IAG+   G    A K F +M              +V    +++G+ +  +MH  + 
Sbjct: 145 WNAMIAGYAKKGQFNDAKKVFEQM----------PAKDLVSYNSMLAGYTQNGKMHLALQ 194

Query: 89  -FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
            F+   + NV   N +V  Y   G ++ A ++F  +   + VSW ++L G A +G   EA
Sbjct: 195 FFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEA 254

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
            +LF++M    +     ++  +++       +D+ ++ F  M +  S+       +T I+
Sbjct: 255 RELFDRMPSKNV----VSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVS------WTTII 304

Query: 208 GLLGRAGFLNEAESFINSM 226
               R G L+EA    N M
Sbjct: 305 NGYIRVGKLDEARQVYNQM 323



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 12/168 (7%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           + S+  RN +SWN ++AG+   G    A + F ++      + + T+   +   G ++  
Sbjct: 196 FESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNA-VSWVTMLCGLAKYGKMAEA 254

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           +E       +F      NV   N ++  Y     +++A K+F  M  +D VSW +++ G 
Sbjct: 255 RE-------LFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGY 307

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
              G   EA Q++ QM   +I    T    ++S     G ID+  Q F
Sbjct: 308 IRVGKLDEARQVYNQMPCKDI----TAQTALMSGLIQNGRIDEADQMF 351



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 19/185 (10%)

Query: 74  VISGFKEGKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           +I   K GK   A+ IF      N+   N ++ + A    I DA ++F  M  R+LVSWN
Sbjct: 24  IIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWN 83

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA--GFIDKGLQYFYLMR 190
           +++ G  H+    EA +LF+ M      P+   F   L   C+   G ++K  +   L+ 
Sbjct: 84  TMIAGYLHNNMVEEASELFDVM------PERDNFSWALMITCYTRKGKLEKARELLELV- 136

Query: 191 NDASLEPPRAEH--YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
                 P + +   + A++    + G  N+A+     M      S Y ++L+    +G  
Sbjct: 137 ------PDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVS-YNSMLAGYTQNGKM 189

Query: 249 EIAVR 253
            +A++
Sbjct: 190 HLALQ 194



 Score = 44.3 bits (103), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 34/169 (20%), Positives = 74/169 (43%), Gaps = 16/169 (9%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           + F  NR +      G + +A ++F +M  ++LV++NS++   A +   R+A QLF+QM 
Sbjct: 16  HAFNHNRQIIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMS 75

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAE-HYTAIVGLLGRAG 214
              +     ++  +++   H   +++  + F +M       P R    +  ++    R G
Sbjct: 76  LRNL----VSWNTMIAGYLHNNMVEEASELFDVM-------PERDNFSWALMITCYTRKG 124

Query: 215 FLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263
            L +A   +  +      + + A+++     G        AK+V +  P
Sbjct: 125 KLEKARELLELVPDKLDTACWNAMIAGYAKKGQ----FNDAKKVFEQMP 169


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 2/298 (0%)

Query: 10  DSSLDFQNVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           D +L+   ++   +   N +SW +IIAG    G   +AL+ F EM+ AG+  +  TI S+
Sbjct: 335 DKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSM 394

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           + A G I+    G+  H    ++    +V V + L+ MYA CG I  +  VF+ M  ++L
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNL 454

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL 188
           V WNSL+ G + HG ++E + +FE + +T +KPD  +F  +LSAC   G  D+G +YF +
Sbjct: 455 VCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNM 514

Query: 189 MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
           M  +  ++ PR EHY+ +V LLGRAG L EA   I  +   P   V+ ALL++C++  N 
Sbjct: 515 MSEEYGIK-PRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNV 573

Query: 249 EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++A  +A+++  L P +P  YVL+SN+  A   W +   IR  M + G++K PG SW+
Sbjct: 574 DLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWI 631



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 94/189 (49%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +YS  +   D   +  S+      S++++I          Q++  FS M   G+  D 
Sbjct: 57  IASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDT 116

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             + ++      +S FK GKQ+H +    G D + FVQ  L  MY  CG + DA KVF  
Sbjct: 117 HVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDR 176

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E+D+V+ ++LL G A  G   E V++  +M+K+ I+P+  ++  +LS    +G+  + 
Sbjct: 177 MSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEA 236

Query: 183 LQYFYLMRN 191
           +  F  M +
Sbjct: 237 VIMFQKMHH 245



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 35/183 (19%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N +SWN I++GF   G  ++A+  F +M   G   D  T++S++ ++G       G+Q+H
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIH 275

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD--------------------- 124
             + K G   +  V + ++ MY   G +    K+F   +                     
Sbjct: 276 GYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVD 335

Query: 125 --------------ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
                         E ++VSW S++ GCA +G   EA++LF +MQ   +KP+  T   +L
Sbjct: 336 KALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSML 395

Query: 171 SAC 173
            AC
Sbjct: 396 PAC 398



 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 63/135 (46%), Gaps = 2/135 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      Q V++ + T+N + WN+++ G+   G  ++ +  F  + +  +  D+ + 
Sbjct: 433 YAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISF 492

Query: 66  TSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           TS++ A G +    EG K  + +  + G    +   + +V +    G + +A  +   + 
Sbjct: 493 TSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIP 552

Query: 125 -ERDLVSWNSLLLGC 138
            E D   W +LL  C
Sbjct: 553 FEPDSCVWGALLNSC 567


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/289 (36%), Positives = 168/289 (58%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  RN +SWN++IAG        +A++ F  M+  G+   + T+T+I+     ++ 
Sbjct: 235 VFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTA 294

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              GK++HA+I K     +  V N LV MYA CGA++   +VF+ M  +DL SWN+L+ G
Sbjct: 295 LGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITG 354

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G   EA++ F++M  +   PDG TF+ +LS C HAG  D G + F +M+ D  + P
Sbjct: 355 YAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDYGISP 414

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
              EHY  +V +LGRAG + EA   + +M   P  S++ +LL++C++HGN  +A   AKR
Sbjct: 415 T-VEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKR 473

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +L PN+   YV+LSN+      W+    +R  M  RG+ K+ G SW+
Sbjct: 474 LFELEPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWL 522



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 107/251 (42%), Gaps = 5/251 (1%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           W A+  G+   G  ++AL  + EM      +  F  +  + A   +   + G+ +HA + 
Sbjct: 146 WVAMGIGYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVL 205

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
           K   D +  V N L+ +Y+  G  ++A +VF  M  R++VSWNSL+ G        EA++
Sbjct: 206 KATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIE 265

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL 209
            F  MQ   +     T   +L  C     +  G +   ++    S   P A    ++V +
Sbjct: 266 AFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVK--STAKPDAPVLNSLVDM 323

Query: 210 LGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL--DLWPNDPA 267
             + G ++      N M +    + +  L++   ++G    A+ S + ++     P+   
Sbjct: 324 YAKCGAMDYCRRVFNGM-QGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGIT 382

Query: 268 IYVLLSNVSKA 278
              LLS  S A
Sbjct: 383 FIALLSGCSHA 393



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 10/171 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +    + V++ ++ ++  SWN +I G+   G   +A++ F EM  +G   D  T 
Sbjct: 324 YAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITF 383

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVFSSM 123
            +++          +G ++  ++ K+ Y  +  V++   LV +    G I +A ++  +M
Sbjct: 384 IALLSGCSHAGLADDGCRLFEMM-KMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNM 442

Query: 124 DERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKT--EIKPDGTTFLVVLS 171
             +   S W SLL  C  HG     V L E + K   E++P+     V+LS
Sbjct: 443 PFKPTGSIWGSLLNSCRLHG----NVPLAEAVAKRLFELEPNNAGNYVMLS 489



 Score = 37.7 bits (86), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 95  SNVFVQNRLVFMYAICGAINDANKVFSSMDER-DLVS--WNSLLLGCAHHGYSREAVQLF 151
           +N  ++ +L+ ++++C  +++A +VF    E  DL    W ++ +G + +GY +EA+ L+
Sbjct: 107 NNPTLKGKLITLFSVCRRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLLY 166

Query: 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            +M     +     F + L AC   G +  G
Sbjct: 167 YEMVCQFGQLGNFAFSMALKACSDLGDLQTG 197


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 181/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +  + ++   V+ S+  ++ ++W+A++ G       E+A++ F ++ + G+  + +T 
Sbjct: 449 YVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTF 508

Query: 66  TSIVGAIGVISGFKE-GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +S++ A    +   E GKQ+HA   K G  + + V + L+ MY+  G I  A KVF+  +
Sbjct: 509 SSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQE 568

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ERD+VSWNS++ G   HG +++A+++F+ MQ   +  D  TF+ VL+AC HAG +++G +
Sbjct: 569 ERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEK 628

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF +M  D  ++  + EHY+ +V L  RAG  ++A   IN M     P++++ LL+AC+V
Sbjct: 629 YFNIMIKDYHID-KKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRV 687

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N E+   +A++++ L PND   YVLLSN+      W++   +R LM  R ++K+ G S
Sbjct: 688 HRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCS 747

Query: 305 WV 306
           W+
Sbjct: 748 WI 749



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 97/191 (50%), Gaps = 11/191 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y + +   D + ++  +  +N +SW ++++G+   G  ++ +   ++M+  G++ + FT 
Sbjct: 149 YMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTF 208

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++GA+   S  + G Q+HA+I K G++   FV N L+ MY     + DA  VF SM  
Sbjct: 209 ATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVV 268

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC----------- 174
           RD V+WN ++ G A  G+  E  Q+F +M+   +K   T F   L  C            
Sbjct: 269 RDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQL 328

Query: 175 HAGFIDKGLQY 185
           H G +  G ++
Sbjct: 329 HCGVVKNGYEF 339



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 101/184 (54%), Gaps = 6/184 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSV-RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           ++TYS+C S  +   ++S      N ++W A+I GF    + ++A+  F +M + G+  +
Sbjct: 348 MVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPN 407

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           +FT ++++   G  S      Q+HA I K  Y+    V   L+  Y   G + ++ +VF 
Sbjct: 408 HFTYSTVLA--GKPSSLLS--QLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFY 463

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-CHAGFID 180
           S+  +D+V+W+++L G A    S +A+++F Q+ K  +KP+  TF  V++AC   A  ++
Sbjct: 464 SIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVE 523

Query: 181 KGLQ 184
            G Q
Sbjct: 524 HGKQ 527



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           +N ++  F       +AL  F ++  +G+ +D  T++  +   GV+     G+Q+H    
Sbjct: 72  YNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSL 131

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
           K G+  +V V   LV MY       D   +F  M  +++VSW SLL G A +G + E + 
Sbjct: 132 KSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIH 191

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           L  QMQ   + P+G TF  VL A      I+ G+Q
Sbjct: 192 LINQMQMEGVNPNGFTFATVLGALADESIIEGGVQ 226



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 94/174 (54%), Gaps = 7/174 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y + +   D + V+ S+  R+ ++WN +I G+  +G   +  + F  MR AG+ +  
Sbjct: 247 ICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKL-- 304

Query: 63  FTITSIVGAIGVISGFKE---GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            + T    A+ + S  +E    KQ+H  + K GY+    ++  L+  Y+ C ++++A K+
Sbjct: 305 -SRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKL 363

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           FS  D   ++V+W +++ G   +  +++AV LF QM +  ++P+  T+  VL+ 
Sbjct: 364 FSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAG 417


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/281 (39%), Positives = 163/281 (58%), Gaps = 1/281 (0%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N +SW ++IA     G   +AL+ F EM+  G+  +  TI  ++ A G I+    GK  H
Sbjct: 308 NVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAH 367

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
               + G  ++V+V + L+ MYA CG +  +   F  M  R+LVSWNSL+ G A HG + 
Sbjct: 368 CFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTF 427

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205
           EA+ +FE MQ+   KPD  +F  VLSAC   G  ++G  YF  M  +  +E  R EHY+ 
Sbjct: 428 EAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVE-ARMEHYSC 486

Query: 206 IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265
           +V LLGR+G L EA + I  M   P   V+ ALLS+C+VH   ++   +AKRV +L P +
Sbjct: 487 MVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRN 546

Query: 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           P  Y+LLSN+  +   W +   +R +M +RG++K PGYSW+
Sbjct: 547 PGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWI 587



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 33/181 (18%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N +SWN +I+GF   GS   A+  F  M   G+  D  +++S++ A+G +     G Q+H
Sbjct: 174 NLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIH 233

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD------------------ 127
             + K G   + FV + L+ MY  C   ++ + VF+ MDE D                  
Sbjct: 234 CYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVD 293

Query: 128 ---------------LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
                          +VSW S++  C+ +G   EA++LF +MQ   +KP+  T   +L A
Sbjct: 294 NALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPA 353

Query: 173 C 173
           C
Sbjct: 354 C 354



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 93/240 (38%), Gaps = 43/240 (17%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           +  IS    I  F  L      ++ FS M   GI  D   + +++     +S  + GKQM
Sbjct: 37  KTGISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQM 96

Query: 85  H--ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD------------------ 124
           H  AL+  +G DS V   + L+ MY     + DA  VF  +                   
Sbjct: 97  HCFALVSGLGLDSVVL--SSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKG 154

Query: 125 -----------------ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
                            E +LVSWN ++ G    G   +AV +F+ M    +KPDGT+  
Sbjct: 155 RVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVS 214

Query: 168 VVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
            VL A         G+Q + Y+++       P     +A++ + G+    +E     N M
Sbjct: 215 SVLPAVGDLDMPLMGIQIHCYVIKQGLG---PDKFVVSALIDMYGKCACASEMSGVFNEM 271



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C   L  +  +  +  RN +SWN+++AG+   G   +A+  F  M++ G   D+ + 
Sbjct: 389 YAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSF 448

Query: 66  TSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           T ++ A       +EG     ++    G ++ +   + +V +    G + +A  +   M 
Sbjct: 449 TCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMP 508

Query: 125 -ERDLVSWNSLLLGCAHH 141
            E D   W +LL  C  H
Sbjct: 509 FEPDSCVWGALLSSCRVH 526


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 177/309 (57%), Gaps = 9/309 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D   ++  +  ++  SWN+II+     G  +  L+ F +M  +GI  D  TI
Sbjct: 256 YGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTI 315

Query: 66  TSIVGAIGVISGFKEGKQMHA--LIFKIGYDS------NVFVQNRLVFMYAICGAINDAN 117
           T+++ A   ++    G+++H   +I  +G D       N+ V N ++ MYA CG++N+A 
Sbjct: 316 TTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNAL 375

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           K+F SM ++D+ SWN +++G   HGY+ EA+ +F QM + E KP+  T + VLSAC HAG
Sbjct: 376 KIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAG 435

Query: 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
           F+  G  +   M +   +  P  EHYT ++ +LGRAG L +A   +  M     P V++A
Sbjct: 436 FVSHGRLFLAQMESTFGV-IPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRA 494

Query: 238 LLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
           LL AC++HGN E+A  +A++VL L P     YVL+SNV      +++  ++R  M  + +
Sbjct: 495 LLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNV 554

Query: 298 RKKPGYSWV 306
           +K PG SW+
Sbjct: 555 KKTPGCSWI 563



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 6/230 (2%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           TY +  S  D Q V+  +  R+ + WNA+I G+  +G  ++AL+ F  M   G+    FT
Sbjct: 154 TYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFT 213

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           IT I+           GK +H ++ K+GYDS V V N L+ MY  C  I DA  +F  ++
Sbjct: 214 ITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMIN 273

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E+D+ SWNS++      G     ++LF++M  + I PD  T   VL AC H   +  G +
Sbjct: 274 EKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGRE 333

Query: 185 YFYLM------RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
               M      ++D +          A++ +  + G +N A    +SMS+
Sbjct: 334 IHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSK 383



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 10/181 (5%)

Query: 6   YSRC----DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           YS+C    ++ L F   Y     RN  ++NAII+GF + G   +  + + +MR  G+  D
Sbjct: 56  YSKCGQMGEAILVF---YDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPD 112

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +T   +V     +    E K++H  + K+G + +VFV + LV  Y   G++ DA KVF 
Sbjct: 113 KYTFPCVVRTCCEV---MEVKKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFG 169

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            +  RD+V WN+++ G A  G   EA+++F +M    + P   T   +LS     G +D 
Sbjct: 170 ELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDN 229

Query: 182 G 182
           G
Sbjct: 230 G 230



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 1/105 (0%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF-SSMDERDLVSWNSLLL 136
             +GKQ+H+L+   G+  +      L+ MY+ CG + +A  VF     ER++ ++N+++ 
Sbjct: 27  LNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIIS 86

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           G   +G + +  Q +++M+   + PD  TF  V+  CC    + K
Sbjct: 87  GFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKK 131


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 178/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C    + + V+S  + ++ + W A++ G+   G  E AL  F+EM    I+ D 
Sbjct: 263 IAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDS 322

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T++S+V +   ++    G+ +H      G ++N+ V + L+ MY+ CG I+DA  VF+ 
Sbjct: 323 YTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNL 382

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  R++VSWN++++GCA +G+ ++A++LFE M + + KPD  TF+ +LSAC H  +I++G
Sbjct: 383 MPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQG 442

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  + N   + P   +HY  +V LLGR G + +A + I +M+ +P   ++  LLS C
Sbjct: 443 QEYFDSISNQHGMTPT-LDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSIC 501

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
              G+   A  +A+ + +L P     Y++LSN+  +   W D   +R LM ++ ++K  G
Sbjct: 502 STKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAG 561

Query: 303 YSWV 306
           +SW+
Sbjct: 562 FSWI 565



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 96/181 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  S  + +  +  +  R+ +S+N  IAGF      +++L+ F  M++ G +   +TI
Sbjct: 99  YAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTI 158

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A   +   + GKQ+H  I    +  NVF+ N L  MYA CG I  A  +F  + +
Sbjct: 159 VSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTK 218

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++LVSWN ++ G A +G   + + L  QM+ +   PD  T   +++A C  G +D+  + 
Sbjct: 219 KNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRV 278

Query: 186 F 186
           F
Sbjct: 279 F 279



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 117/261 (44%), Gaps = 52/261 (19%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + ++  +  +N +SWN +I+G+   G  E+ +    +MR +G   D  T+
Sbjct: 200 YAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTM 259

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++I+ A                                   Y  CG +++A +VFS   E
Sbjct: 260 STIIAA-----------------------------------YCQCGRVDEARRVFSEFKE 284

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-----HAGFID 180
           +D+V W ++++G A +G   +A+ LF +M    I+PD  T   V+S+C      H G   
Sbjct: 285 KDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAV 344

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKAL 238
            G      + N+  +        +A++ +  + GF+++A S  N M   P  +V  + A+
Sbjct: 345 HGKSILAGLNNNLLVS-------SALIDMYSKCGFIDDARSVFNLM---PTRNVVSWNAM 394

Query: 239 LSACQVHGNREIAVRSAKRVL 259
           +  C  +G+ + A+   + +L
Sbjct: 395 IVGCAQNGHDKDALELFENML 415



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +F      + F  N L+  YA  G+I +    F  M  RD VS+N+ + G + +   +E+
Sbjct: 80  LFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQES 139

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSA 172
           ++LF++MQ+   +P   T + +L+A
Sbjct: 140 LELFKRMQREGFEPTEYTIVSILNA 164


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 168/301 (55%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    + + V  ++ +   +S+N  IAG    G  E AL+ FS MR   +  D  T 
Sbjct: 219 YMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTF 278

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S +     ++   +G+Q+HA + K G D  V V   LV MY+ CG + D+ +V+     
Sbjct: 279 VSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCG 338

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            DL   ++++  C  HG   +AV+LF+QM     +P+  TFL +L AC H+G  D+GL++
Sbjct: 339 LDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEF 398

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM      +P   +HY  IV LLGR+G L+EAE+ I SM       ++K LLSAC+  
Sbjct: 399 FELMTKTYGFQPS-VKHYNCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQ 457

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++A R A+RV++  P D A YVLLSN+   +  W D  ++R +M  + IRK+PG SW
Sbjct: 458 KNFDMAERIAERVIESDPRDSAPYVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSW 517

Query: 306 V 306
           V
Sbjct: 518 V 518



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 132/268 (49%), Gaps = 11/268 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  + TRN  +WNA++AG  N+G  E +L+ F  MR+ G+  D F + S+      +
Sbjct: 128 RELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGL 187

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+HA + + G DS++ V N L  MY  CG + +   V  ++    +VS+N+ +
Sbjct: 188 LDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTI 247

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G   +G S  A++ F  M+  E+ PD  TF+  +S C     + +G Q +  +++    
Sbjct: 248 AGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVD 307

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVY--KALLSACQVHGNREIAV 252
              P     T++V +  R G L ++E   +      G  ++   A++SAC  HG    AV
Sbjct: 308 KVVPV---ITSLVHMYSRCGCLGDSERVYDGYC---GLDLFLLSAMISACGFHGQGHKAV 361

Query: 253 RSAKRVLD--LWPNDPAIYVLLSNVSKA 278
              K++++    PN+     LL   S +
Sbjct: 362 ELFKQMMNGGAEPNEVTFLALLYACSHS 389



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 4/112 (3%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           +Q+HA     G  ++ F  N L+  YA  G +  A  +F  + +R+++SWN L+ GC  +
Sbjct: 62  RQLHAFAATSGAAADRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCIKN 121

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           G    A +LF++M    +     T+  +++   + G  +  LQ+F  MR + 
Sbjct: 122 GDLGSARELFDKMPTRNV----ATWNAMVAGLTNVGLDEDSLQFFLAMRREG 169



 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D FT  +++ A   +      + +   I K     NV   N L+      G +  A ++F
Sbjct: 76  DRFTTNNLLLAYADLGDLPTARHLFEGISK----RNVMSWNILIGGCIKNGDLGSARELF 131

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M  R++ +WN+++ G  + G   +++Q F  M++  + PD      V   C  AG +D
Sbjct: 132 DKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCC--AGLLD 189


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 172/302 (56%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + ++ ++     +SWN +I+G   +G+  QAL  +  M++  +  D  T 
Sbjct: 353 YFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTF 412

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S + A   ++   +G+++H  I     ++N  V   L+ MYA CG +++A K+F  + +
Sbjct: 413 SSTLSACSQLAALDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPK 472

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RDLVSW S++     HG + EA++LF++MQK  ++ D  TFL VLSAC HAG +D+G  Y
Sbjct: 473 RDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMY 532

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSACQV 244
           F  M     ++P   EHY+ ++ LLGRAG L+EA E    S        +   L SAC +
Sbjct: 533 FNEMVVQYDIKPG-IEHYSCLIDLLGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACLL 591

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N  + ++  K ++++ P+DP+ Y+LLSN+  + + WD+   +R  M   G++K PG S
Sbjct: 592 HNNFVLGIQIGKMLIEVDPDDPSTYILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCS 651

Query: 305 WV 306
           W+
Sbjct: 652 WI 653



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 3/248 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + V+  +  +N I+WNA+I G+   G     ++    M   G      T+
Sbjct: 252 YGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTL 311

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI+ A       + GK +H  I +   D ++F+   L+  Y  CG ++ A  +F ++ +
Sbjct: 312 TSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISK 371

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            ++VSWN ++ G    G   +A+ +++ M++  +KPD  TF   LSAC     +DKG + 
Sbjct: 372 NEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGREL 431

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            Y + N   LE        A++ +  + G ++EA    + + +    S + +++ A   H
Sbjct: 432 HYCIINH-KLEANEIV-MGALLDMYAKCGDVDEARKLFHQLPKRDLVS-WTSMIFAYGSH 488

Query: 246 GNREIAVR 253
           G    A+R
Sbjct: 489 GQASEALR 496



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 113/225 (50%), Gaps = 4/225 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++CD  +D   ++     R+   WNA+I+ +   G  E ALK F +M++ G + +  T 
Sbjct: 151 YAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTF 210

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T +V +   +   + GK++H  + +     + FV + LV MY  CG +  A +VF  +  
Sbjct: 211 TVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPR 270

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           ++ ++WN+++ G +  G SR  ++L  +M     KP   T   ++ A   +  +  G   
Sbjct: 271 KNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFI 330

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
           + Y++RN   ++        +++    + G+++ AE+   ++S+N
Sbjct: 331 HGYILRNRIDVDIFID---VSLIDFYFKCGYVSSAETIFRTISKN 372



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
           WNA+++ + N     +AL+ F ++   + +  D++T   ++ A G +     G+++H  +
Sbjct: 73  WNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHL 132

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
            K G   +VFV + L+ MYA C    DA K+F    +RD+  WN+++      G +  A+
Sbjct: 133 LKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMAL 192

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIV 207
           + F++M++   +P+  TF VV+S+C     +++G + +  L+     L+   A   +A+V
Sbjct: 193 KTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLD---AFVLSALV 249

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260
            + G+ G L  A+     + R    + + A+++   + G+    +    R+ D
Sbjct: 250 DMYGKCGCLEMAKEVFEKIPRKNAIT-WNAMITGYSLKGDSRSCIELLMRMND 301



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 2/116 (1%)

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           +DY T+ S +         K+GK +H  IF  G+ SN+ +   L+  Y  C     A  V
Sbjct: 1   MDYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELV 60

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSAC 173
           F + D   D+  WN+LL    ++    EA+QLF+Q+   + ++PD  T+ VVL AC
Sbjct: 61  FQTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKAC 116


>gi|357127969|ref|XP_003565649.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37320-like [Brachypodium distachyon]
          Length = 567

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 181/307 (58%), Gaps = 8/307 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---D 59
           I  Y+RC    +   V+ ++  RN +SW A+I+G+      E  L+ F  MRQ+     D
Sbjct: 222 ISLYARCYQLENAYQVFQNMPVRNVVSWTALISGYAQDNQVEPCLQVFQLMRQSACRPND 281

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           I + TI S+     ++     G+ +H L  ++G+D  V + N L+ MYA CG+I++A  +
Sbjct: 282 ITFATIFSVCTNHALLG---LGRSVHGLELRMGFDLCVHILNALISMYAKCGSIDEAQFI 338

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F S+  +DLVSWNS++ G + +G +   ++L ++M+K  I PD  +FL +LS+C HA  +
Sbjct: 339 FQSIACKDLVSWNSMIFGYSQYGLAEHCLKLLKEMEKEHIVPDVISFLGILSSCRHACLV 398

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           ++G + F  M     +EP   +HY+ +V LLGRAG L+EA   I++MS  P   ++ +LL
Sbjct: 399 EEGRRCFKAMLK-LGIEP-ELDHYSCMVDLLGRAGLLDEACDLIHTMSMTPNAVIWGSLL 456

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           SAC+++GN  I + +A+  L L P+  A +V L+N+  + DCW D   +R +M  RG++ 
Sbjct: 457 SACRMYGNIPIGIHAAEHRLKLEPSCAATHVQLANLYASIDCWSDVARVRKMMKERGLKT 516

Query: 300 KPGYSWV 306
             G SW+
Sbjct: 517 NTGCSWI 523



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 4/185 (2%)

Query: 44  EQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRL 103
           E      +EMR+ GI  D     S +    V    + G Q+HAL+ K+GYD  V     L
Sbjct: 162 ENKFMLLAEMRRRGISADVSIFASAISFCAVKQSIRGGGQLHALLVKVGYDLAVLSGTSL 221

Query: 104 VFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG 163
           + +YA C  + +A +VF +M  R++VSW +L+ G A        +Q+F+ M+++  +P+ 
Sbjct: 222 ISLYARCYQLENAYQVFQNMPVRNVVSWTALISGYAQDNQVEPCLQVFQLMRQSACRPND 281

Query: 164 TTFLVVLSACCHAGFIDKGLQYFYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESF 222
            TF  + S C +   +  G     L +R    L         A++ +  + G ++EA+  
Sbjct: 282 ITFATIFSVCTNHALLGLGRSVHGLELRMGFDL---CVHILNALISMYAKCGSIDEAQFI 338

Query: 223 INSMS 227
             S++
Sbjct: 339 FQSIA 343


>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
 gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
          Length = 450

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/293 (36%), Positives = 179/293 (61%), Gaps = 3/293 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +     ++WN II    + G   +AL+ FS M + GI+ D  T   I+ A   +
Sbjct: 143 RQLFEEIPNPELVAWNIIIDCHVSCGKFNEALEMFSRMLKFGIEPDEATFVVILSACSAL 202

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+ +H+ I  IG+     V N L+ MYA CGA+ +A ++F+ M++++ V+WN+++
Sbjct: 203 GALDFGRWVHSCISNIGHGCITEVNNSLLDMYAKCGALQEAFEIFNGMNKKNTVTWNTMI 262

Query: 136 LGCAHHGYSREAVQLFEQMQKTEI-KPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           LG A HGY+ EA+ LF  M + ++  PD  TFLVVLSAC H G +DKG ++F +M+ +  
Sbjct: 263 LGLASHGYANEALALFSNMLEQKLWAPDDITFLVVLSACSHGGMVDKGWRFFDIMKKEYH 322

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           ++P   +HY  +V +LGRAGF+ EA   I++M       V++ LL+AC++HGN E+  + 
Sbjct: 323 IQPT-IKHYGCMVDILGRAGFVEEAYRLISNMPMQCNAIVWRTLLAACRLHGNVELGKQV 381

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK-KPGYSWV 306
            K++L+L P+  + YVLL+N   +   W++A  +R  M+ RG++K +PG S V
Sbjct: 382 RKQLLELEPDHSSDYVLLANTYASAGRWNEAMRVRKTMHKRGVQKPEPGNSVV 434



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 122/263 (46%), Gaps = 6/263 (2%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +V+  +   +   +N +I GF       +A   +  M++ G+  D FT + ++   G + 
Sbjct: 43  SVFEKIGDPDAFIFNTMIRGFGKANDPRKAFDYYKRMQERGLVSDSFTFSFLLKVCGQLG 102

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G+ MH    K G +S+VFV+N LV MY     I  + ++F  +   +LV+WN ++ 
Sbjct: 103 LVLLGRLMHCSTLKRGLNSHVFVRNTLVHMYGTFKDIEASRQLFEEIPNPELVAWNIIID 162

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
                G   EA+++F +M K  I+PD  TF+V+LSAC   G +D G      + N     
Sbjct: 163 CHVSCGKFNEALEMFSRMLKFGIEPDEATFVVILSACSALGALDFGRWVHSCISNIG--H 220

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG--NREIAVRS 254
               E   +++ +  + G L EA    N M++      +  ++     HG  N  +A+ S
Sbjct: 221 GCITEVNNSLLDMYAKCGALQEAFEIFNGMNKK-NTVTWNTMILGLASHGYANEALALFS 279

Query: 255 AKRVLDLW-PNDPAIYVLLSNVS 276
                 LW P+D    V+LS  S
Sbjct: 280 NMLEQKLWAPDDITFLVVLSACS 302



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 34/202 (16%)

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC--GAINDANKVFSSMDERDLVSWNSLLL 136
           K+ KQ+HA + ++G++ N FV  +++   A    G +N A  VF  + + D   +N+++ 
Sbjct: 2   KDLKQIHARVIQLGFEQNRFVVGKVIVFCAAAEHGDMNYAVSVFEKIGDPDAFIFNTMIR 61

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTF-----------LVVLSACCHAGFIDKGLQY 185
           G       R+A   +++MQ+  +  D  TF           LV+L    H   + +GL  
Sbjct: 62  GFGKANDPRKAFDYYKRMQERGLVSDSFTFSFLLKVCGQLGLVLLGRLMHCSTLKRGLNS 121

Query: 186 FYLMRN------------DAS------LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
              +RN            +AS      +  P    +  I+      G  NEA    + M 
Sbjct: 122 HVFVRNTLVHMYGTFKDIEASRQLFEEIPNPELVAWNIIIDCHVSCGKFNEALEMFSRML 181

Query: 228 R---NPGPSVYKALLSACQVHG 246
           +    P  + +  +LSAC   G
Sbjct: 182 KFGIEPDEATFVVILSACSALG 203



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 87/175 (49%), Gaps = 17/175 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI----DID 61
           Y++C +  +   +++ +  +N ++WN +I G  + G   +AL  FS M +  +    DI 
Sbjct: 234 YAKCGALQEAFEIFNGMNKKNTVTWNTMILGLASHGYANEALALFSNMLEQKLWAPDDIT 293

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKV 119
           +  + S     G++    +G +    I K  Y     +++   +V +    G + +A ++
Sbjct: 294 FLVVLSACSHGGMVD---KGWRFFD-IMKKEYHIQPTIKHYGCMVDILGRAGFVEEAYRL 349

Query: 120 FSSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKT--EIKPDGTTFLVVLS 171
            S+M  + + + W +LL  C  HG     V+L +Q++K   E++PD ++  V+L+
Sbjct: 350 ISNMPMQCNAIVWRTLLAACRLHG----NVELGKQVRKQLLELEPDHSSDYVLLA 400


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 178/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C    + + V+S  + ++ + W A++ G+   G  E AL  F+EM    I+ D 
Sbjct: 263 IAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDS 322

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T++S+V +   ++    G+ +H      G ++N+ V + L+ MY+ CG I+DA  VF+ 
Sbjct: 323 YTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNL 382

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  R++VSWN++++GCA +G+ ++A++LFE M + + KPD  TF+ +LSAC H  +I++G
Sbjct: 383 MPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQG 442

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  + N   + P   +HY  +V LLGR G + +A + I +M+ +P   ++  LLS C
Sbjct: 443 QEYFDSITNQHGMTPT-LDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSIC 501

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
              G+   A  +A+ + +L P     Y++LSN+  +   W D   +R LM ++ ++K  G
Sbjct: 502 STKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAG 561

Query: 303 YSWV 306
           +SW+
Sbjct: 562 FSWI 565



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 97/181 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  S  + +  +  +  R+ +S+N  IAGF      +++L+ F  M++ G +   +TI
Sbjct: 99  YAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTI 158

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A   +S  + GKQ+H  I    +  NVF+ N L  MYA CG I  A  +F  + +
Sbjct: 159 VSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTK 218

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++LVSWN ++ G A +G   + + L  QM+ +   PD  T   +++A C  G +D+  + 
Sbjct: 219 KNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRV 278

Query: 186 F 186
           F
Sbjct: 279 F 279



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 117/261 (44%), Gaps = 52/261 (19%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + ++  +  +N +SWN +I+G+   G  E+ +    +MR +G   D  T+
Sbjct: 200 YAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTM 259

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++I+ A                                   Y  CG +++A +VFS   E
Sbjct: 260 STIIAA-----------------------------------YCQCGRVDEARRVFSEFKE 284

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-----HAGFID 180
           +D+V W ++++G A +G   +A+ LF +M    I+PD  T   V+S+C      H G   
Sbjct: 285 KDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAV 344

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKAL 238
            G      + N+  +        +A++ +  + GF+++A S  N M   P  +V  + A+
Sbjct: 345 HGKSILAGLNNNLLVS-------SALIDMYSKCGFIDDARSVFNLM---PTRNVVSWNAM 394

Query: 239 LSACQVHGNREIAVRSAKRVL 259
           +  C  +G+ + A+   + +L
Sbjct: 395 IVGCAQNGHDKDALELFENML 415



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 50/97 (51%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +F      ++F  N L+  YA  G+I +    F  M  RD VS+N+ + G + +   +E+
Sbjct: 80  LFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQES 139

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++LF++MQ+   +P   T + +L+A      +  G Q
Sbjct: 140 LELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQ 176


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 181/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +  + ++   V+ S+  ++ ++W+A++ G       E+A++ F ++ + G+  + +T 
Sbjct: 449 YVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTF 508

Query: 66  TSIVGAIGVISGFKE-GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +S++ A    +   E GKQ+HA   K G  + + V + L+ MY+  G I  A KVF+  +
Sbjct: 509 SSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQE 568

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ERD+VSWNS++ G   HG +++A+++F+ MQ   +  D  TF+ VL+AC HAG +++G +
Sbjct: 569 ERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEK 628

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF +M  D  ++  + EHY+ +V L  RAG  ++A   IN M     P++++ LL+AC+V
Sbjct: 629 YFNIMIKDYHID-KKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRV 687

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N E+   +A++++ L PND   YVLLSN+      W++   +R LM  R ++K+ G S
Sbjct: 688 HRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCS 747

Query: 305 WV 306
           W+
Sbjct: 748 WI 749



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 97/191 (50%), Gaps = 11/191 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y + +   D + ++  +  +N +SW ++++G+   G  ++ +   ++M+  G++ + FT 
Sbjct: 149 YMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTF 208

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++GA+   S  + G Q+HA+I K G++   FV N L+ MY     + DA  VF SM  
Sbjct: 209 ATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVV 268

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC----------- 174
           RD V+WN ++ G A  G+  E  Q+F +M+   +K   T F   L  C            
Sbjct: 269 RDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQL 328

Query: 175 HAGFIDKGLQY 185
           H G +  G ++
Sbjct: 329 HCGVVKNGYEF 339



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 101/184 (54%), Gaps = 6/184 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSV-RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           ++TYS+C S  +   ++S      N ++W A+I GF    + E+A+  F +M + G+  +
Sbjct: 348 MVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPN 407

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           +FT ++++   G  S      Q+HA I K  Y+    V   L+  Y   G + ++ +VF 
Sbjct: 408 HFTYSTVLA--GKPSSLL--SQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFY 463

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-CHAGFID 180
           S+  +D+V+W+++L G A    S +A+++F Q+ K  +KP+  TF  V++AC   A  ++
Sbjct: 464 SIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVE 523

Query: 181 KGLQ 184
            G Q
Sbjct: 524 HGKQ 527



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           +N ++  F       +AL  F ++  +G+ +D  T++  +   GV+     G+Q+H    
Sbjct: 72  YNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSL 131

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
           K G+  +V V   LV MY       D   +F  M  +++VSW SLL G A +G + E + 
Sbjct: 132 KSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIH 191

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           L  QMQ   + P+G TF  VL A      I+ G+Q
Sbjct: 192 LINQMQMEGVNPNGFTFATVLGALADESIIEGGVQ 226



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 93/174 (53%), Gaps = 7/174 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y + +   D + V+ S+  R+ ++WN +I G+  +G   +  + F  MR AG+ +  
Sbjct: 247 ICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKL-- 304

Query: 63  FTITSIVGAIGVISGFKE---GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            + T    A+ + S  +E    KQ+H  + K GY+    ++  L+  Y+ C ++++A K+
Sbjct: 305 -SRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKL 363

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           FS  D   ++V+W +++ G   +  + +AV LF QM +  ++P+  T+  VL+ 
Sbjct: 364 FSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAG 417


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 104/293 (35%), Positives = 176/293 (60%), Gaps = 5/293 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++ +  ++ +SW+A+I+G+   G  E+AL  F EM   G+ +D   + S++ A   +S 
Sbjct: 220 LFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSI 279

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYA----ICGAINDANKVFSSMDERDLVSWNS 133
            K GK +H L+ ++G +S V +QN L+ MY+     CG + +A +VF+ M+E+ + SWN+
Sbjct: 280 VKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNA 339

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           L++G A +G    ++ +F +M+   + P+  TF+ VL AC H G +D+G  +F  M    
Sbjct: 340 LIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKH 399

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            +EP   +HY  +V LLGRAG LNEAE  I SM   P  + + ALL AC+ HG+ E+  R
Sbjct: 400 GIEP-NVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGER 458

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             +++++L P+    +VLLSN+  +   W+D  ++R +M  +G+ K PG S +
Sbjct: 459 VGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLI 511



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 35/205 (17%)

Query: 13  LDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA 71
           LD+   ++  +   N   WN ++  +    S E+AL  +  M +  +  D +T   +V A
Sbjct: 79  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 138

Query: 72  IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN-------------- 117
             V      GK++H  + K+G+DS+V+VQN L+ MYA+CG + DA               
Sbjct: 139 CAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSW 198

Query: 118 --------------------KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157
                               K+F+ MDE+D+VSW++L+ G   +G   EA+ +F +M   
Sbjct: 199 NSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNAN 258

Query: 158 EIKPDGTTFLVVLSACCHAGFIDKG 182
            ++ D    + VLSAC H   +  G
Sbjct: 259 GMRLDEVVVVSVLSACAHLSIVKTG 283



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    +   V++ +  +   SWNA+I G    G  E++L  FSEM+  G+  +  T 
Sbjct: 313 YMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITF 372

Query: 66  TSIVGAIGVISGFKEGK-QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++GA   +    EG+    ++I K G + NV     +V +    G +N+A K+  SM 
Sbjct: 373 MGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMP 432

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
              D+ +W +LL  C  HG +    ++  ++   E++PD   F V+LS
Sbjct: 433 MAPDVATWGALLGACKKHGDTEMGERVGRKL--IELQPDHDGFHVLLS 478


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/291 (36%), Positives = 165/291 (56%), Gaps = 2/291 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFTITSIVGAIGVI 75
            ++  +   + + WNA+IA +   G G+QAL  +  M     +     T  +++     +
Sbjct: 252 ELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAEL 311

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S  K+G+ +HA +    +D+N+ V N LV MY  CG +++A  VF SM  +D +SWN+++
Sbjct: 312 SALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTII 371

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
              A+HG+S +A+ L+++M    +KP   TF+ +LSAC H G +  GL YFY M++D  +
Sbjct: 372 SSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRI 431

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           +P    H+  I+ LLGR G L EAE  + SM        + +LL AC+ HG+ +  VR+A
Sbjct: 432 KPS-VPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAA 490

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +V+D  P     YVLLSN+  A   W D   IR +M  RG++K PG SW+
Sbjct: 491 DQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWI 541



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 121/289 (41%), Gaps = 43/289 (14%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           L I  Y +C      + ++ S+ +RN  +W   +A F + G   +AL  F  M Q+G   
Sbjct: 102 LLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERP 161

Query: 61  DYFTITSIV--GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           D  T + I+   A    +   +G+++H      G   NV V   ++ MY  CG ++DA  
Sbjct: 162 DRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARA 221

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ----------------------- 155
            F  +  ++ V+WN+++      G  REA++LF +M                        
Sbjct: 222 AFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQA 281

Query: 156 ---------KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN---DASLEPPRAEHY 203
                     T++ P   TF+ V+  C     + +G      +R    DA+L        
Sbjct: 282 LDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVS----- 336

Query: 204 TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            A+V + G+ G L+EA    +SM      S +  ++S+   HG+ + A+
Sbjct: 337 NALVHMYGKCGCLDEALDVFHSMKLKDEIS-WNTIISSYAYHGHSDQAL 384



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 6/192 (3%)

Query: 39  NLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN-- 96
           + G  E   K    +    +++D     +++   G  +     +++H+ I  + + ++  
Sbjct: 37  SFGERESLHKSIQLLESRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQP 96

Query: 97  VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
            F+ N L+ MY  CG +  A ++F SM  R++ +W   +   +H+G   EA+  F +M +
Sbjct: 97  PFLANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQ 156

Query: 157 TEIKPDGTTFLVVL--SACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214
           +  +PD  TF V+L   A   A  ID+G +     R    L  P     TA++ + G+ G
Sbjct: 157 SGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLL--PNVVVGTAVISMYGKCG 214

Query: 215 FLNEAESFINSM 226
            L++A +    +
Sbjct: 215 RLDDARAAFEEL 226



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 24/162 (14%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    +  +V+ S++ +++ISWN II+ +   G  +QAL  + EM   G+     T 
Sbjct: 343 YGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTF 402

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR------------LVFMYAICGAI 113
             ++ A             H  +   G D    +Q+             ++ +    G +
Sbjct: 403 VGLLSACS-----------HGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRL 451

Query: 114 NDANKVFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
            +A  V  SM  + + V W SLL  C  HG  +  V+  +Q+
Sbjct: 452 AEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQV 493


>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
 gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
          Length = 590

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 171/299 (57%), Gaps = 1/299 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+R     + ++++  +  RN ISW+ +I G    G  ++AL+ F  M + GI  D    
Sbjct: 255 YARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRPDRVAA 314

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              V A   +   ++G+ +H+ + K    S+V VQ  L+ MY  CG ++ A  +F SM E
Sbjct: 315 VGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMPE 374

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R +V+WN +++G   HGY  +AV LF +M+   +  D  + L +L+AC HAG + +GL+ 
Sbjct: 375 RSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEGLEI 434

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ M+ D  ++ P+ EHY A+V LLGRAG L++A   I +M   P P ++ +LL+AC+ H
Sbjct: 435 FHRMKKDFGID-PKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRSH 493

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
              E+A  S +R+ +L  +D  +YVLLSN+      W D   IR LM + G+RK  G S
Sbjct: 494 SCVELAELSVERLANLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRS 552



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 83/159 (52%), Gaps = 6/159 (3%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           +R+ +SWN+++AG+   G    A + F EM Q     D F+  +++   G   G   G  
Sbjct: 178 SRDLVSWNSMVAGYVGCGEMGLAQELFDEMPQR----DAFSWGALIDGYGKQGG--AGVD 231

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
               +F    + ++   N ++  YA  G +++A  +F  M ER+++SW+ ++ G    G 
Sbjct: 232 RARELFDQMTERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGE 291

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++EA++ F+ M +  I+PD    +  +SAC   G +++G
Sbjct: 292 AKEALEHFQSMLRCGIRPDRVAAVGAVSACAQLGALEQG 330



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 9/140 (6%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
            R+   WN  I      G    AL  F+ MR  G+  D +T  +++ A G   G + G  
Sbjct: 76  ARDPFPWNTAIR-LHAPGRPRAALLYFARMRSCGVRPDAYTFPAVLKACGCAPGCRAGLL 134

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD--ERDLVSWNSLL---LGC 138
           +HA   + G  +++F  N L+  Y          KVF       RDLVSWNS++   +GC
Sbjct: 135 VHAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGVSRDLVSWNSMVAGYVGC 194

Query: 139 AHHGYSREAVQLFEQMQKTE 158
              G ++E   LF++M + +
Sbjct: 195 GEMGLAQE---LFDEMPQRD 211



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 12/108 (11%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAIC---GAINDANKVFSSMDE---RDLVSWNSLLL 136
           Q HAL+   G+ +   ++   + + AI    GA   A+ VF+ + E   RD   WN+ + 
Sbjct: 28  QCHALLLTSGHLAASPLRLSNLLLLAIASVPGAAPLADAVFARLPEPAARDPFPWNTAIR 87

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----CHAGFI 179
             A  G  R A+  F +M+   ++PD  TF  VL AC     C AG +
Sbjct: 88  LHAP-GRPRAALLYFARMRSCGVRPDAYTFPAVLKACGCAPGCRAGLL 134


>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 544

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 175/306 (57%), Gaps = 6/306 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +   + + + V+  + TRN ++WNA+IAG+  +G  EQAL+ F  M Q  +  D 
Sbjct: 224 VTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDE 283

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ A   +   ++GK++H  I +     N FV N L+ MYA CG +  A  +F S
Sbjct: 284 FTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDS 343

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  ++   WN+++   A HG S EA+ LF QM+++  KP+  T L VL AC H GF+D+G
Sbjct: 344 MRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEG 403

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           LQ F  +  DA       EHY  +V LLGRAG L EA   +N+MS  P   ++ +LL AC
Sbjct: 404 LQIFNKL--DAYGVGAGVEHYGCLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGSLLGAC 461

Query: 243 QVHGNREIAVRSAKRVLDLW----PNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
           +VH + E++    + +L L      ++ A Y++L+N+  A++ W+ A  +R  M  RG+ 
Sbjct: 462 RVHRDAEMSRLVTEEILRLHSFHASSNDAEYIMLANIMAASERWEQAEQMRRKMARRGVE 521

Query: 299 KKPGYS 304
           K PG S
Sbjct: 522 KTPGCS 527



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 118/275 (42%), Gaps = 34/275 (12%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +  D +  +  +  RN IS+NA++AG+   G  + AL  F  MR +   + + T+
Sbjct: 101 YCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMDGALALFGGMR-SWTHVTWATL 159

Query: 66  T------------------------SIVGAIGVISGFKEGKQMHAL--IFKIGYDSNVFV 99
                                    ++V    ++ G+     M     +F      N FV
Sbjct: 160 IRGFAEKGDMAEARRWFEATPPGMRTVVTWTVLVQGYVCAGDMETAREVFDRMPARNAFV 219

Query: 100 QNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
            + +V  Y   G   +A  VF  +  R+LV+WN+L+ G A  G S +A++ F  M +  +
Sbjct: 220 WSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERV 279

Query: 160 KPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT--AIVGLLGRAGFLN 217
           KPD  T   +LSAC   G +++G +    +      E  R  H+    ++ +  + G L 
Sbjct: 280 KPDEFTMASLLSACAQLGSLEQGKKVHDFINQ----EHIRKNHFVMNGLIDMYAKCGDLA 335

Query: 218 EAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            A    +SM R      +  ++SA   HG  + A+
Sbjct: 336 HARYIFDSM-RWKNNECWNTMISALASHGQSDEAL 369



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK +HA   K  +  ++ V   +V MY  CGA+ DA + F  M +R+++S+N+LL G A 
Sbjct: 75  GKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAV 134

Query: 141 HGYSREAVQLFEQMQ 155
            G    A+ LF  M+
Sbjct: 135 AGDMDGALALFGGMR 149


>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g56570
 gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
 gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 611

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 174/303 (57%), Gaps = 4/303 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    + ++ +  +  ++ I+WN +I+      S E AL  F      G   + +T 
Sbjct: 258 YCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSDSSE-ALLMFQRFESQGFVPNCYTF 316

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-D 124
           TS+V A   I+    G+Q+H  IF+ G++ NV + N L+ MYA CG I D+ +VF  + D
Sbjct: 317 TSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVD 376

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            R+LVSW S+++G   HGY  EAV+LF++M  + I+PD   F+ VLSAC HAG ++KGL+
Sbjct: 377 RRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLK 436

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF +M ++  + P R + Y  +V LLGRAG + EA   +  M   P  S + A+L AC+ 
Sbjct: 437 YFNVMESEYGINPDR-DIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKA 495

Query: 245 HGNREIAVR-SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
           H +  +  R +A++V++L P     YV+LS +  A   W D   +R +M   G +K+ G 
Sbjct: 496 HKHNGLISRLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKKEAGM 555

Query: 304 SWV 306
           SW+
Sbjct: 556 SWI 558



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 98/180 (54%), Gaps = 2/180 (1%)

Query: 6   YSRCDSSLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y+ C  +++    ++  ++ +N ++W  +I GF +LG G   LK + +M     ++  + 
Sbjct: 156 YATCSVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYC 215

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           IT  V A   I     GKQ+HA + K G+ SN+ V N ++ +Y  CG +++A   F  M+
Sbjct: 216 ITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEME 275

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++DL++WN+L+        S EA+ +F++ +     P+  TF  +++AC +   ++ G Q
Sbjct: 276 DKDLITWNTLISELERSD-SSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQ 334



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 109/223 (48%), Gaps = 25/223 (11%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++++  +  R+ ++W A+I G+ +     +A +CF EM + G   + FT++S++ +   +
Sbjct: 65  RSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRNM 124

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN-KVFSSMDERDLVSWNSL 134
                G  +H ++ K+G + +++V N ++ MYA C    +A   +F  +  ++ V+W +L
Sbjct: 125 KVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTL 184

Query: 135 LLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSAC---------CHAGFIDKGL 183
           + G  H G     +++++QM  +  E+ P   T  V  SA           HA  I +G 
Sbjct: 185 ITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGF 244

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           Q    + N             +I+ L  R G+L+EA+ + + M
Sbjct: 245 QSNLPVMN-------------SILDLYCRCGYLSEAKHYFHEM 274



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 103 LVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
           L+  Y   G + +A  +F  M +RD+V+W +++ G A   Y+  A + F +M K    P+
Sbjct: 51  LIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPN 110

Query: 163 GTTFLVVLSAC 173
             T   VL +C
Sbjct: 111 EFTLSSVLKSC 121


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/292 (35%), Positives = 169/292 (57%), Gaps = 2/292 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN ++W  ++ G+      E +L  F  M  +GI  +  T    + A   +
Sbjct: 278 RKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDL 337

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +   EGKQ+H +I K  +  + FV + L+ +YA CG +  A K+F    E+DL+SWN ++
Sbjct: 338 ATLCEGKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGII 397

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
              AHHG   EA+ L+E+MQ    +P+  T++V+LSAC H+G +D+GL+ F  M ND S+
Sbjct: 398 AAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSI 457

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGP-SVYKALLSACQVHGNREIAVRS 254
              R EHYT ++ L  RAG L++A+  I+ +   P   SV+ ALL  C  HGN  I   +
Sbjct: 458 -AVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLA 516

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           A+ ++   P++   Y LLSN+  +   W +A +IR+ M NRG++K+PG SW+
Sbjct: 517 ARNLIQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWI 568



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 39/172 (22%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ S+  RN +SWNA+I+G+      ++AL  F++M    I      IT           
Sbjct: 218 LFDSMPERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITG---------- 267

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
                               F+QN+          +  A K+F  M ER++V+W +++ G
Sbjct: 268 --------------------FIQNK---------DLKRARKLFDEMPERNVVTWTTMMNG 298

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
                 S  ++ LF  M  + I+P+  TFL  L AC     + +G Q   ++
Sbjct: 299 YLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMI 350



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 12/132 (9%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           NV     L+  YA  G +++A  +F  M +R++VSWN++L   A  G + +A  LF++M 
Sbjct: 102 NVVTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMP 161

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR-AEHYTAIVGLLGRAG 214
                 D  ++ ++L+    +G +DK  + F  M       P R    +T +V  + R+G
Sbjct: 162 VR----DAGSWNILLAMLVRSGSVDKARELFGRM-------PERDVMAWTTMVDGVARSG 210

Query: 215 FLNEAESFINSM 226
            ++EA    +SM
Sbjct: 211 NVDEARLLFDSM 222



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
           NRL+   A  G + DA K+F    ERD+VSW +L+   A  G  R+A  LF+   +++ +
Sbjct: 44  NRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFD---RSDAR 100

Query: 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
            +  T+  +LS    AG +D+    F  M
Sbjct: 101 RNVVTWTALLSGYARAGLVDEAEVLFQRM 129



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDIDYF 63
           Y+R     + + ++  +  RN +SWN ++  +   G    A   F  M  R AG    + 
Sbjct: 113 YARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAG---SWN 169

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            + +++   G +   +E       +F    + +V     +V   A  G +++A  +F SM
Sbjct: 170 ILLAMLVRSGSVDKARE-------LFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSM 222

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
            ER++VSWN+++ G   +    EA+ LF +M   +I
Sbjct: 223 PERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDI 258



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 80/176 (45%), Gaps = 17/176 (9%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---DID 61
            Y++C      + ++   R ++ ISWN IIA + + G G +A+  + +M+  G    D+ 
Sbjct: 368 VYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVT 427

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR----LVFMYAICGAINDAN 117
           Y  + S     G++    EG ++   +     D ++ V++     L+ + +  G ++DA 
Sbjct: 428 YVVLLSACSHSGLVD---EGLKIFESMVN---DRSIAVRDEHYTCLIDLCSRAGRLDDAK 481

Query: 118 KVFSSMDERDLVS--WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           ++   +  +      W++LL GC  HG   E++         + +PD      +LS
Sbjct: 482 RLIHYLKIKPASGSVWSALLGGCNAHG--NESIGNLAARNLIQAEPDNAGTYTLLS 535


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 176/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y +C    D   V+    + + I+  ++I        GE A+K F EM + G++ D 
Sbjct: 446 IDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDP 505

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F ++S++ A   +S +++GKQ+HA + K  + S+ F  N LV+ YA CG+I DA   FSS
Sbjct: 506 FVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSS 565

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ER +VSW++++ G A HG+ + A++LF +M    I P+  T   VL AC HAG +D+ 
Sbjct: 566 LPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEA 625

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M+    ++    EHY+ ++ LLGRAG L++A   +NSM      SV+ ALL A 
Sbjct: 626 KRYFNSMKEMFGIDRTE-EHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGAS 684

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH + E+   +A+++  L P     +VLL+N   ++  W++   +R LM +  I+K+P 
Sbjct: 685 RVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPA 744

Query: 303 YSWV 306
            SWV
Sbjct: 745 MSWV 748



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN +SWN +++ +        A++ F EM  +GI    F  + +V A         G+Q+
Sbjct: 165 RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQV 224

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA++ ++GY+ +VF  N LV MY   G ++ A+ +F  M + D+VSWN+L+ GC  +G+ 
Sbjct: 225 HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHY 203
             A++L  QM+ + + P+      +L AC  AG  D G Q + ++++ +A      ++ Y
Sbjct: 285 HRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANAD-----SDDY 339

Query: 204 TAI--VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNRE 249
             +  V +  +  FL++A    + MS      ++ AL+S C  HG R 
Sbjct: 340 IGVGLVDMYAKNHFLDDAMKVFDWMSHRD-LILWNALISGCS-HGGRH 385



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 86/155 (55%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +   + +SWNA+I+G    G   +A++   +M+ +G+  + F ++SI+ A      
Sbjct: 259 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGA 318

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F  G+Q+H  + K   DS+ ++   LV MYA    ++DA KVF  M  RDL+ WN+L+ G
Sbjct: 319 FDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISG 378

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           C+H G   EA  +F  ++K  +  + TT   VL +
Sbjct: 379 CSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 413



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 133/277 (48%), Gaps = 15/277 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + V+  +     +SW++++  + N G    A++ F  MR  G+  + F +
Sbjct: 47  YSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFAL 106

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-D 124
             +   +  +   + G Q+HA+    G+ S+VFV N LV MY   G ++DA +VF     
Sbjct: 107 PVV---LKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGS 163

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ER+ VSWN L+     +    +A+Q+F +M  + I+P    F  V++AC  +  ID G Q
Sbjct: 164 ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQ 223

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            +  ++R     +   A    A+V +  + G ++ A      M  +   S + AL+S C 
Sbjct: 224 VHAMVVRMGYEKDVFTA---NALVDMYVKMGRVDIASVIFEKMPDSDVVS-WNALISGCV 279

Query: 244 V--HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
           +  H +R I +    +   L PN      +LS++ KA
Sbjct: 280 LNGHDHRAIELLLQMKSSGLVPN----VFMLSSILKA 312



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 122/248 (49%), Gaps = 5/248 (2%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   V+  +  R+ I WNA+I+G  + G  ++A   F  +R+ G+ ++  T+ +++ +  
Sbjct: 356 DAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTA 415

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +      +Q+HAL  KIG+  +  V N L+  Y  C  ++DA +VF      D+++  S
Sbjct: 416 SLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTS 475

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
           ++   +   +   A++LF +M +  ++PD      +L+AC      ++G Q + +L++  
Sbjct: 476 MITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ 535

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
              +   A    A+V    + G + +AE   +S+    G   + A++     HG+ + A+
Sbjct: 536 FMSD---AFAGNALVYTYAKCGSIEDAELAFSSLPER-GVVSWSAMIGGLAQHGHGKRAL 591

Query: 253 RSAKRVLD 260
               R++D
Sbjct: 592 ELFGRMVD 599



 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 29/197 (14%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           MR AG      TI+  +           G  +HA + K G+ +++  +N L+  Y+ C  
Sbjct: 1   MRSAG------TISQQLTRYAAAQALLPGAHLHANLLKSGFLASL--RNHLISFYSKCRR 52

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS- 171
              A +VF  + +   VSW+SL+   +++G  R A+Q F  M+   +  +     VVL  
Sbjct: 53  PCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC 112

Query: 172 -------ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
                  A  HA  +  G      + N             A+V + G  GF+++A    +
Sbjct: 113 VPDAQLGAQVHAMAMATGFGSDVFVAN-------------ALVAMYGGFGFMDDARRVFD 159

Query: 225 SMSRNPGPSVYKALLSA 241
                     +  L+SA
Sbjct: 160 EAGSERNAVSWNGLMSA 176


>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
 gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  S  D    +S +  ++ IS+N++I G       E++ + F EMR +GI  D  T+
Sbjct: 353 YAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTL 412

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   ++    G   H      GY  N  + N L+ MY  CG ++ A +VF +M +
Sbjct: 413 LGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHK 472

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWN++L G   HG  +EA+ LF  MQ+T + PD  T L +LSAC H+G +D+G Q 
Sbjct: 473 RDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQL 532

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M        PR +HY  +  LL RAG+L+EA  F+N M   P   V   LLSAC  +
Sbjct: 533 FNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTY 592

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+    +K++  L     ++ VLLSN   A + W+DA  IR +   RG+ K PGYSW
Sbjct: 593 KNAELGNEVSKKMQSLGETTESL-VLLSNTYSAAERWEDAARIRMIQKKRGLLKTPGYSW 651

Query: 306 V 306
           V
Sbjct: 652 V 652



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 125/284 (44%), Gaps = 52/284 (18%)

Query: 2   QILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           + + Y+R    LDF+        +N+++W+A+I G+      ++A + F +M    ++ +
Sbjct: 254 KCIIYARRVFDLDFK--------KNEVTWSAMIGGYVENEMIKEAGEVFFQML---VNDN 302

Query: 62  YFTITSIVGAIGVI-------SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN 114
              +T +  AIG+I            G+ +H    K G+  ++ VQN ++  YA  G++ 
Sbjct: 303 VAMVTPV--AIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLC 360

Query: 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
           DA + FS +  +D++S+NSL+ GC  +    E+ +LF +M+ + I+PD TT L VL+AC 
Sbjct: 361 DAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACS 420

Query: 175 HAGFIDKGL-----------------------QYFYLMRNDASLEPPRAEHYTAIVGL-- 209
           H   +  G                         Y    + D +       H   IV    
Sbjct: 421 HLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNT 480

Query: 210 ----LGRAGFLNEAESFINSMSR---NPGPSVYKALLSACQVHG 246
                G  G   EA S  NSM     NP      A+LSAC   G
Sbjct: 481 MLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSG 524



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 85/158 (53%), Gaps = 1/158 (0%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N I+W+ +I  + +    E+AL  + +M  +G+    +T   ++ A   +    +GK +H
Sbjct: 67  NPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIH 126

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
           + +    + ++++V   LV  YA CG +  A KVF  M +RD+V+WN+++ G + H    
Sbjct: 127 SHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLT 186

Query: 146 EAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKG 182
           + + LF  M++ + + P+ +T + +  A   AG + +G
Sbjct: 187 DVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREG 224



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 79/150 (52%), Gaps = 1/150 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFT 64
           Y++C        V+  +  R+ ++WNA+I+GF         +  F +MR+  G+  +  T
Sbjct: 148 YAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLST 207

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I  +  A+G     +EGK +H    ++G+ +++ V+  ++ +YA    I  A +VF    
Sbjct: 208 IVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDF 267

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
           +++ V+W++++ G   +   +EA ++F QM
Sbjct: 268 KKNEVTWSAMIGGYVENEMIKEAGEVFFQM 297


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 167/301 (55%), Gaps = 26/301 (8%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQA-----------------------GID--IDYFTI 65
           NA+++ +   G  E+A K F ++ +                        G+D  +  FT 
Sbjct: 390 NALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKIEGMDDGVSTFTF 449

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +    +G+++HAL  K G+ S+  + N LV MYA CG + DA + F  M +
Sbjct: 450 ASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKD 509

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            +++SW S++ G A HGY+++A+ +F  M    +KP+  T++ VLSAC H G + +G ++
Sbjct: 510 HNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEH 569

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+ D  L  PR EHY  IV LL R+G + EA  FIN M       V+K LLSAC+ +
Sbjct: 570 FRSMQKDHGL-LPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTY 628

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN EI   +A  V++L P DPA YVLLSN+      WD+   IR+LM ++ + K+ G SW
Sbjct: 629 GNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLSW 688

Query: 306 V 306
           +
Sbjct: 689 M 689



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 85/173 (49%), Gaps = 4/173 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q V+  +  R  + W  +I  +   G   + ++ F  M   G + D ++++S++ A   +
Sbjct: 200 QRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTEL 259

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA---ICGAINDANKVFSSMDERDLVSWN 132
              + G+Q+H++  ++G  S+  V   LV MYA   +  ++  A KVF +M   +++SW 
Sbjct: 260 GSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWT 319

Query: 133 SLLLGCAHHGYSREAVQ-LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +L+ G    G     V  LF +M    I+P+  T+  +L AC +    D G Q
Sbjct: 320 ALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQ 372



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 123/290 (42%), Gaps = 22/290 (7%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQ-ALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           + V+ ++   N +SW A+I+G+   G  E   +  F EM    I  ++ T ++++ A   
Sbjct: 304 RKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACAN 363

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +S    G+Q+HA + K        V N LV MYA  G + +A K F  + E +++S +  
Sbjct: 364 LSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPD 423

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-----M 189
           +         R       +++  +      TF  +LSA    G + KG +   L      
Sbjct: 424 V------ETERNNASCSSKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGF 477

Query: 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNRE 249
           R+D  +         ++V +  R G+L +A    + M  +   S + +++S    HG  +
Sbjct: 478 RSDQGIS-------NSLVSMYARCGYLEDACRAFDEMKDHNVIS-WTSIISGLAKHGYAK 529

Query: 250 IAVRSAKRVL--DLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
            A+     ++   + PND     +LS  S      +     R++  + G+
Sbjct: 530 QALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGL 579



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 20/148 (13%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---DIDY 62
           Y+RC    D    +  ++  N ISW +II+G    G  +QAL  F +M  AG+   D+ Y
Sbjct: 491 YARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTY 550

Query: 63  FTITSIVGAIGVISGFKEGKQM-------HALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
             + S    +G++   KEGK+        H L+ ++ + + +      V + A  G + +
Sbjct: 551 IAVLSACSHVGLV---KEGKEHFRSMQKDHGLLPRMEHYACI------VDLLARSGLVEE 601

Query: 116 ANKVFSSMD-ERDLVSWNSLLLGCAHHG 142
           A +  + M  + D + W +LL  C  +G
Sbjct: 602 ARQFINEMPCKADALVWKTLLSACRTYG 629



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 3/182 (1%)

Query: 6   YSRCDSSLDFQNVYSSV-RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS+C +    + V+  +   R+ +SW A+ +     G+  ++L+   EM + G+  + FT
Sbjct: 86  YSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFT 145

Query: 65  ITSIVGAIGVISGFK-EGKQMHALIFKIGY-DSNVFVQNRLVFMYAICGAINDANKVFSS 122
           + +   A      F+  G  +   + K G+  ++V V   L+ M+A  G +  A +VF  
Sbjct: 146 LCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDG 205

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ER  V W  L+      G + + V+LF  M     +PDG +   ++SAC   G +  G
Sbjct: 206 LIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLG 265

Query: 183 LQ 184
            Q
Sbjct: 266 QQ 267



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 2/98 (2%)

Query: 78  FKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSM-DERDLVSWNSLL 135
            + G+ +H  + +    D++  V N L+ MY+ CGA+  A +VF  M   RDLVSW ++ 
Sbjct: 56  LRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMA 115

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
              A +G  RE+++L  +M +  ++P+  T      AC
Sbjct: 116 SCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARAC 153


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 176/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y +C    D   V+    + + I+  ++I        GE A+K F EM + G++ D 
Sbjct: 353 IDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDP 412

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F ++S++ A   +S +++GKQ+HA + K  + S+ F  N LV+ YA CG+I DA   FSS
Sbjct: 413 FVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSS 472

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ER +VSW++++ G A HG+ + A++LF +M    I P+  T   VL AC HAG +D+ 
Sbjct: 473 LPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEA 532

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M+    ++    EHY+ ++ LLGRAG L++A   +NSM      SV+ ALL A 
Sbjct: 533 KRYFNSMKEMFGIDRTE-EHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGAS 591

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH + E+   +A+++  L P     +VLL+N   ++  W++   +R LM +  I+K+P 
Sbjct: 592 RVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPA 651

Query: 303 YSWV 306
            SWV
Sbjct: 652 MSWV 655



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN +SWN +++ +        A++ F EM  +GI    F  + +V A         G+Q+
Sbjct: 72  RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQV 131

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA++ ++GY+ +VF  N LV MY   G ++ A+ +F  M + D+VSWN+L+ GC  +G+ 
Sbjct: 132 HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 191

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHY 203
             A++L  QM+ + + P+      +L AC  AG  D G Q + ++++ +A      ++ Y
Sbjct: 192 HRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANAD-----SDDY 246

Query: 204 TAI--VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNRE 249
             +  V +  +  FL++A    + MS      ++ AL+S C  HG R 
Sbjct: 247 IGVGLVDMYAKNHFLDDAMKVFDWMSHRD-LILWNALISGCS-HGGRH 292



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 86/155 (55%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +   + +SWNA+I+G    G   +A++   +M+ +G+  + F ++SI+ A      
Sbjct: 166 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGA 225

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F  G+Q+H  + K   DS+ ++   LV MYA    ++DA KVF  M  RDL+ WN+L+ G
Sbjct: 226 FDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISG 285

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           C+H G   EA  +F  ++K  +  + TT   VL +
Sbjct: 286 CSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 320



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 119/247 (48%), Gaps = 3/247 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   V+  +  R+ I WNA+I+G  + G  ++A   F  +R+ G+ ++  T+ +++ +  
Sbjct: 263 DAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTA 322

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +      +Q+HAL  KIG+  +  V N L+  Y  C  ++DA +VF      D+++  S
Sbjct: 323 SLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTS 382

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++   +   +   A++LF +M +  ++PD      +L+AC      ++G Q    +    
Sbjct: 383 MITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ 442

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            +    A +  A+V    + G + +AE   +S+    G   + A++     HG+ + A+ 
Sbjct: 443 FMSDAFAGN--ALVYTYAKCGSIEDAELAFSSLPER-GVVSWSAMIGGLAQHGHGKRALE 499

Query: 254 SAKRVLD 260
              R++D
Sbjct: 500 LFGRMVD 506



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 15/230 (6%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           MR  G+  + F +  +   +  +   + G Q+HA+    G+ S+VFV N LV MY   G 
Sbjct: 1   MRAEGVCCNEFALPVV---LKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 113 INDANKVFSSM-DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           ++DA +VF     ER+ VSWN L+     +    +A+Q+F +M  + I+P    F  V++
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 172 ACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNP 230
           AC  +  ID G Q +  ++R     +   A    A+V +  + G ++ A      M  + 
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTA---NALVDMYVKMGRVDIASVIFEKMPDSD 174

Query: 231 GPSVYKALLSACQV--HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
             S + AL+S C +  H +R I +    +   L PN      +LS++ KA
Sbjct: 175 VVS-WNALISGCVLNGHDHRAIELLLQMKSSGLVPN----VFMLSSILKA 219


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/291 (38%), Positives = 166/291 (57%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  +N +SW  ++ GF   G  E+AL+ F  M + G   + +TI S + A   I
Sbjct: 261 KELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKI 320

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G ++H  +   G+  N+ +   LV MYA CG I  A KVF    E+ L+ W+ ++
Sbjct: 321 GALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMI 380

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG+ R+A+Q FE M+ T  KPD   FL VL+AC H+G +++GL++F  MR    +
Sbjct: 381 WGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLI 440

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           EP   +HYT +V +LGRAG L+EA  FI +M   P   V+ AL  AC+ H N E+A  ++
Sbjct: 441 EPS-MKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELAS 499

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           K++L L P  P  YV LSN   +   WDDA  +R  M + G  K PG+S++
Sbjct: 500 KKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFI 550



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 104/240 (43%), Gaps = 44/240 (18%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F     SV+  + + WN +I G+C +G   +A + F  M +                   
Sbjct: 198 FDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPK------------------- 238

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
               K+    ++LI       N F++          G +  A ++F  M E+++VSW ++
Sbjct: 239 ----KDTGSWNSLI-------NGFMK---------MGDMGRAKELFVKMPEKNVVSWTTM 278

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDA 193
           + G + +G   +A++ F  M +   +P+  T +  LSAC   G +D GL+ + YL  N  
Sbjct: 279 VNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGF 338

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            L        TA+V +  + G +  AE   +  ++  G  ++  ++    +HG+   A++
Sbjct: 339 KLNLVIG---TALVDMYAKCGNIEHAEKVFHE-TKEKGLLIWSVMIWGWAIHGHFRKALQ 394



 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 40/196 (20%), Positives = 82/196 (41%), Gaps = 5/196 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +    + V+   + +  + W+ +I G+   G   +AL+ F  M+  G   D    
Sbjct: 352 YAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVF 411

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGY--DSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            +++ A        EG +    + + GY  + ++     +V M    G +++A K   +M
Sbjct: 412 LAVLNACSHSGQVNEGLKFFDNM-RRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAM 470

Query: 124 D-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
               D V W +L   C  H     A    +++ + E K  G +++ + +A    G  D  
Sbjct: 471 PITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPG-SYVFLSNAYASVGRWDDA 529

Query: 183 LQYFYLMRNDASLEPP 198
            +    MR+  + + P
Sbjct: 530 ERVRVSMRDHGAHKDP 545



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 19/124 (15%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMY-AICGAINDAN---KVFSSMDERDLVSWNSLLLG 137
           +Q+H  +    Y  NVF  +R+V  + + C ++N  +    +F   + ++   +N+L+ G
Sbjct: 59  RQIHGQL----YRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRG 114

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-----------HAGFIDKGLQYF 186
            A +     ++  F  M K +I PD  TF  VL +             H G +  GL++ 
Sbjct: 115 LAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFD 174

Query: 187 YLMR 190
             +R
Sbjct: 175 SFVR 178


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 176/302 (58%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        ++  +  R+ +SWN++I       +   A+  F +M  +GI  D  +I
Sbjct: 486 YAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSI 545

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++ + A   +     GK +H  + K    S+V+ ++ L+ MYA CG +  A  VF +M E
Sbjct: 546 SAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKE 605

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++VSWNS++  C +HG  ++++ LF +M +K+ I+PD  TFL ++S+CCH G +D+G++
Sbjct: 606 KNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVR 665

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +F  M  D  ++P + EHY  +V L GRAG L EA   + SM   P   V+  LL AC++
Sbjct: 666 FFRSMTEDYGIQP-QQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRL 724

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N E+A  ++ +++DL P++   YVL+SN       W+    +R+LM  R ++K PGYS
Sbjct: 725 HKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYS 784

Query: 305 WV 306
           W+
Sbjct: 785 WI 786



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 122/247 (49%), Gaps = 7/247 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C      QN++S   + + + + A+I+G+ + G    +L+ F  + +  I  + 
Sbjct: 382 IDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNE 441

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ SI+  IG++   K G+++H  I K G+D+   +   ++ MYA CG +N A ++F  
Sbjct: 442 ITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFER 501

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH--AGFID 180
           + +RD+VSWNS++  CA       A+ +F QM  + I  D  +    LSAC +  +    
Sbjct: 502 LSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFG 561

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           K +  F +  + AS         + ++ +  + G L  A +   +M      S + ++++
Sbjct: 562 KAIHGFMIKHSLAS----DVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVS-WNSIIA 616

Query: 241 ACQVHGN 247
           AC  HG 
Sbjct: 617 ACGNHGK 623



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 1/181 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++  V  ++ + WN ++ G+   G+ +  +K FS MR   I  +  T   ++       
Sbjct: 194 KLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKL 253

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G Q+H L+   G D    ++N L+ MY+ CG  +DA+K+F  M   D V+WN ++ 
Sbjct: 254 LIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMIS 313

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASL 195
           G    G   E++  F +M  + + PD  TF  +L +      ++   Q + Y+MR+  SL
Sbjct: 314 GYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISL 373

Query: 196 E 196
           +
Sbjct: 374 D 374



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 87/165 (52%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D   ++  +   + ++WN +I+G+   G  E++L  F EM  +G+  D  T 
Sbjct: 284 YSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITF 343

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ ++      +  KQ+H  I +     ++F+ + L+  Y  C  ++ A  +FS  + 
Sbjct: 344 SSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNS 403

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
            D+V + +++ G  H+G   +++++F  + K +I P+  T + +L
Sbjct: 404 VDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSIL 448



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 4/225 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQI--SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           Y+ C S  D   ++  +  R      WN+II+ F   G   QAL  + +M   G+  D  
Sbjct: 80  YAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVS 139

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T   +V A   +  FK    +   +  +G D N FV + L+  Y   G I+  +K+F  +
Sbjct: 140 TFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRV 199

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            ++D V WN +L G A  G     ++ F  M+  +I P+  TF  VLS C     ID G+
Sbjct: 200 LQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGV 259

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
           Q   L+    S          +++ +  + G  ++A      MSR
Sbjct: 260 QLHGLVV--VSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSR 302



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 2/98 (2%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER--DLVSWNSLL 135
            ++GKQ+HA +       + +   R++ MYA+CG+ +D  K+F  +D R   +  WNS++
Sbjct: 51  LRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSII 110

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
                +G   +A+  + +M    + PD +TF  ++ AC
Sbjct: 111 SSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKAC 148


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 171/302 (56%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C +  D  NV+  +    N +SWNAI++         +A + F  M  +    D  T
Sbjct: 428 YTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDNIT 487

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           IT+I+G    +   + G Q+H    K G   +V V NRL+ MYA CG +  A  VF S  
Sbjct: 488 ITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGLLKHARYVFDSTQ 547

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             D+VSW+SL++G A  G  +EA+ LF  M+   ++P+  T+L VLSAC H G +++G  
Sbjct: 548 NPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACSHIGLVEEGWH 607

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            +  M  +  + PP  EH + +V LL RAG L EAE+FI     +P  +++K LL++C+ 
Sbjct: 608 LYNTMEIELGI-PPTREHVSCMVDLLARAGCLYEAENFIKKTGFDPDITMWKTLLASCKT 666

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN +IA R+A+ +L L P++ A  VLLSN+  +   W +   +R LM   G++K PG S
Sbjct: 667 HGNVDIAERAAENILKLDPSNSAALVLLSNIHASAGNWKEVARLRNLMKQMGVQKVPGQS 726

Query: 305 WV 306
           W+
Sbjct: 727 WI 728



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 1/169 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D +  + +++ R+ +SW  +I+G+   G    A+  + +M ++G   D  T 
Sbjct: 125 YGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTF 184

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A  +      G Q+H  + K GYD ++  QN L+ MY   G I  A+ VF+ +  
Sbjct: 185 GSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMIST 244

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI-KPDGTTFLVVLSAC 173
           +DL+SW S++ G    GY  EA+ LF  M +  + +P+   F  V SAC
Sbjct: 245 KDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSAC 293



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 131/280 (46%), Gaps = 15/280 (5%)

Query: 7   SRCDSSLDFQNVYSSVRTRNQI------SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           S CD    F  + S+ R   QI      SWNAIIA   N    E A+  F +M   G+  
Sbjct: 323 SLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAIIAALANSDVNE-AIYFFCQMIHMGLMP 381

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D  T  +++ A G      +G Q+H+ I K+G D    V N L+ MY  C  ++DA  VF
Sbjct: 382 DDITFLNLLCACGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVF 441

Query: 121 SSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
             + E  +LVSWN++L  C+ H    EA +LF+ M  +E KPD  T   +L  C     +
Sbjct: 442 KDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVSL 501

Query: 180 DKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
           + G Q + + +++   ++   +     ++ +  + G L  A    +S ++NP    + +L
Sbjct: 502 EVGNQVHCFSVKSGLVVDVSVSNR---LIDMYAKCGLLKHARYVFDS-TQNPDIVSWSSL 557

Query: 239 LSACQVHGNREIAVRSAK--RVLDLWPNDPAIYVLLSNVS 276
           +      G  + A+   +  R L + PN+     +LS  S
Sbjct: 558 IVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACS 597



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 131/265 (49%), Gaps = 8/265 (3%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVI 75
           +V++ + T++ ISW ++I GF  LG   +AL  F +M RQ     + F   S+  A   +
Sbjct: 237 DVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSL 296

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G+Q+  +  K G   NVF    L  MYA  G +  A + F  ++  DLVSWN+++
Sbjct: 297 LKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAII 356

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
              A+   + EA+  F QM    + PD  TFL +L AC     +++G+Q + Y+++    
Sbjct: 357 AALANSDVN-EAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHSYIIK--MG 413

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           L+   A    +++ +  +   L++A +    +S N     + A+LSAC  H     A R 
Sbjct: 414 LDKVAAV-CNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEAFRL 472

Query: 255 AKRVL--DLWPNDPAIYVLLSNVSK 277
            K +L  +  P++  I  +L   ++
Sbjct: 473 FKLMLFSENKPDNITITTILGTCAE 497



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 1/180 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFS-EMRQAGIDIDYFT 64
           ++R  S   +   Y +     ++S N+ I   C      +AL  F+  ++ + I ++  T
Sbjct: 23  WNRIQSCDAYGESYDTNYHGGELSTNSYINLMCKQQHYREALDTFNFHLKNSSIQLEPST 82

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             +++ A   +   K GK++H  I K     ++ +QN ++ MY  CG++ DA K F +M 
Sbjct: 83  YVNLILACTNVRSLKYGKRIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQ 142

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            R +VSW  ++ G + +G   +A+ ++ QM ++   PD  TF  ++ ACC AG ID G Q
Sbjct: 143 LRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQ 202


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 164/301 (54%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++ ++ +D + V+  +  RN ++WN +I GF N G G + +K   EM + G   D  TI
Sbjct: 315 YAKSENIIDARRVFDEMSIRNVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTI 374

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+ + G  S   E  Q+HA   K+     + V N L+  Y+ CG+I  A K F    +
Sbjct: 375 SSIISSCGYASAITETLQVHAFAVKLSCQDFLSVANSLISAYSKCGSITSAFKCFELTSQ 434

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            DLV+W SL+   A HG + ++ ++FE+M    IKPD   FL VLSAC H G + KGL Y
Sbjct: 435 PDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKGLHY 494

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM N   +  P +EHYT +V LLGR G +NEA   + SM          A + +C++H
Sbjct: 495 FKLMTNAYQI-VPDSEHYTCLVDLLGRYGLINEAFEILRSMPIEVDSDTLGAFIGSCKLH 553

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+A  +A+++  + P     Y ++SN+  +   W D   IR  M ++   K PG SW
Sbjct: 554 SNMELAKLAAEKLFLIEPEKSVNYAVMSNIFASQKHWYDVERIRKTMEDKRDAKVPGCSW 613

Query: 306 V 306
           +
Sbjct: 614 I 614



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 103/181 (56%), Gaps = 2/181 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    + + V+  V  R+ + WN +++ +      E+A + F+ MR   ++ D FT 
Sbjct: 212 YAKCGFVENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTF 271

Query: 66  TSIVGAIG--VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           +S++  I    +  +  GKQ+H+L+ +  +DS+V V + L+ MYA    I DA +VF  M
Sbjct: 272 SSLLSVISDDALEYYDFGKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEM 331

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             R++V+WN++++G  +HG   E ++L ++M +    PD  T   ++S+C +A  I + L
Sbjct: 332 SIRNVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETL 391

Query: 184 Q 184
           Q
Sbjct: 392 Q 392



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 16/194 (8%)

Query: 2   QILT-YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFC-----NLGSGEQALKCFSEMRQ 55
           QIL+ Y +C  + D + ++  +  RN +SWN +I         N  SG +   CFS  R+
Sbjct: 100 QILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASVGRNDENESSGMRL--CFSYFRR 157

Query: 56  AGIDI---DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
             +++   D+ T   ++      +  + G Q+H    K+G+D + FV   LV +YA CG 
Sbjct: 158 MLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGF 217

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           + +A +VF  +  RDLV WN ++     +    EA ++F  M+   +  D  TF  +LS 
Sbjct: 218 VENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSV 277

Query: 173 CCHAGFIDKGLQYF 186
                  D  L+Y+
Sbjct: 278 -----ISDDALEYY 286



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 10/147 (6%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           EGKQ+HA + K G+   + +QN+++ +Y  C    DA K+F  +  R++VSWN ++    
Sbjct: 78  EGKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASV 137

Query: 140 HHGYSREAVQL------FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
                 E+  +      F +M    + PD  TF  ++  C     I+ G+Q + + ++  
Sbjct: 138 GRNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVG 197

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEA 219
             L+        A+VGL  + GF+  A
Sbjct: 198 FDLDCFVG---CALVGLYAKCGFVENA 221


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 169/304 (55%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +++C      + ++  +  +N ++W+ +I+G+      ++A++ F  ++  G+  + 
Sbjct: 192 IRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANE 251

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             + S++ +   +   + G++ H  + K G   N+ +   LV MYA CG+I+ A  VF  
Sbjct: 252 TVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFED 311

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ERD +SW +L+ G A HGYS  +++ F  M +  + P   TF  VLSAC H G +++G
Sbjct: 312 LPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERG 371

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            Q F  M+ D  +E PR EHY  +V LLGRAG L EAE F+  M   P   V+ ALL AC
Sbjct: 372 FQIFESMKRDHRVE-PRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGAC 430

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N EI  R  K ++ L P     YVLLSN+      W+   ++R +M  +G++K PG
Sbjct: 431 RIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPG 490

Query: 303 YSWV 306
           +S +
Sbjct: 491 HSLI 494



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 138/293 (47%), Gaps = 38/293 (12%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++S ++  N   +NA+I G     + +QA   + + ++ G+  D  T   +V +   +  
Sbjct: 75  IFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHC 134

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI---------------------------- 109
              G Q H  I K G++ +V+VQN LV MYA                             
Sbjct: 135 ISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRG 194

Query: 110 ---CGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
              CG +  A K+F  M E++LV+W++++ G A + +  +AV+LF+ +Q   ++ + T  
Sbjct: 195 FNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVM 254

Query: 167 LVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINS 225
           + V+S+C H G ++ G + + Y+++N  +L        TA+V +  R G +++A      
Sbjct: 255 VSVISSCAHLGALELGERAHDYVVKNGMTLNLILG---TALVDMYARCGSIDKAVWVFED 311

Query: 226 MSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVS 276
           +      S + AL++   +HG  E +++    +++  L P D     +LS  S
Sbjct: 312 LPERDTLS-WTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACS 363


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 175/305 (57%), Gaps = 3/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y++         ++  + +++ ++W A++ G+   G  ++AL+ F +M+  G++ D 
Sbjct: 216 IVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDE 275

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGY--DSNVFVQNRLVFMYAICGAINDANKVF 120
            T+  ++ A   +   K    +  +  + G+    NV V + L+ MY+ CG+ ++A KVF
Sbjct: 276 VTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVF 335

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M ER++ S++S++LG A HG +  A+QLF  M KTEI+P+  TF+ +LSAC HAG ++
Sbjct: 336 EVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVE 395

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +G Q F  M     +  P  +HY  +V LLGRAG L EA   + +M   P   V+ ALL 
Sbjct: 396 QGRQLFAKMEKFFGV-APSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLG 454

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           AC++HGN +IA  +A  +  L PN    Y+LLSN+  +   W++   +R ++  +G +K 
Sbjct: 455 ACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKN 514

Query: 301 PGYSW 305
           PG SW
Sbjct: 515 PGCSW 519



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 127/296 (42%), Gaps = 37/296 (12%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  V   N   W A+I G+   G   ++   ++ MR+ G+    FT +++  A G    
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 78  FKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN---- 132
              GKQ+HA    IG + S+++V N ++ +Y  CG +  A KVF  M ERD+VSW     
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 133 ---------------------------SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
                                      +++ G A +G  +EA++ F++MQ   ++ D  T
Sbjct: 218 AYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277

Query: 166 FLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP-RAEHYTAIVGLLGRAGFLNEAESFIN 224
              V+SAC   G + K   +   +   +   P       +A++ +  + G  +EA     
Sbjct: 278 LAGVISACAQLGAV-KHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFE 336

Query: 225 SMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
            M      S Y +++    +HG    A++    +L  ++ PN      +LS  S A
Sbjct: 337 VMKERNVFS-YSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHA 391


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 169/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    + + V   + + + +S N IIAG    G  E AL+ F  MR  G+  D  T 
Sbjct: 280 YMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTF 339

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + +   ++   +G+Q+H  + K G D  V V   LV MY+ CG + D+ +VF     
Sbjct: 340 VSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCG 399

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D    ++++     HG+ ++A++LF+QM     +P   TFL +L AC H+G  ++G+  
Sbjct: 400 SDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDC 459

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM     ++P   +HYT +V LLGR+G L+EAE+ I SM   P   ++K LLSAC+  
Sbjct: 460 FELMTKTYGMQPS-VKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQ 518

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++A R AKRV++L P+D A YVLLSN+   +  W D  ++R  M +  +RK+PG SW
Sbjct: 519 KNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSW 578

Query: 306 V 306
           V
Sbjct: 579 V 579



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 130/277 (46%), Gaps = 13/277 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN  +WNA++AG  NLG  E++L  F +MR+ G+  D F + S+      +
Sbjct: 189 RKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGL 248

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+HA + + G D ++ V + L  MY  CG + +   V   +    +VS N+++
Sbjct: 249 RDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTII 308

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G   +G S  A++ F  M+   +  D  TF+  +S+C     + +G Q +  +M+    
Sbjct: 309 AGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVD 368

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
              P     T +V +  R G L ++E             +  A++SA   HG+ + A+  
Sbjct: 369 KVVPV---MTCLVHMYSRCGCLGDSERVFFGYC-GSDTFLLSAMISAYGFHGHGQKAIEL 424

Query: 255 AKRVLD--LWPNDPAIYVLLSNVS------KATDCWD 283
            K++++    P+D     LL   S      +  DC++
Sbjct: 425 FKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFE 461



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           +Q+HA     G  ++ F  N L+  YA  G +  A ++F  +  R+++SWN L  G   +
Sbjct: 123 RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKN 182

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           G    A +LF++M +  +     T+  +++   + GF ++ L +F  MR +
Sbjct: 183 GDLGGARKLFDEMPERNV----ATWNAMVAGLTNLGFDEESLGFFLDMRRE 229



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 86/204 (42%), Gaps = 12/204 (5%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMR----QAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           + W+     F +L    +AL+   ++      +G   D FT   ++ A   +      ++
Sbjct: 100 VLWSDAARLFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARE 159

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +   I +     NV   N L   Y   G +  A K+F  M ER++ +WN+++ G  + G+
Sbjct: 160 LFERIPR----RNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGF 215

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEH 202
             E++  F  M++  + PD      V   C     +  G Q + Y++R+    +      
Sbjct: 216 DEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVG-- 273

Query: 203 YTAIVGLLGRAGFLNEAESFINSM 226
            +++  +  R G L E E+ +  +
Sbjct: 274 -SSLAHMYMRCGCLQEGEAVLRML 296


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 177/302 (58%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS+C   LD  + ++S +  +++++WN++I+ F   G  E+AL  F +M   G+  +  T
Sbjct: 495 YSKC-GRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVT 553

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I+SI+ A   +     GK++H +I K    +++F ++ L+ MY  CG +  A +VF  M 
Sbjct: 554 ISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMP 613

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E++ VSWNS++     HG  +E+V L   MQ+   K D  TFL ++SAC HAG + +GL+
Sbjct: 614 EKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLR 673

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M  +  +E P+ EH + +V L  RAG L++A  FI  M   P   ++ ALL AC+V
Sbjct: 674 LFRCMTEEYHIE-PQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRV 732

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N E+A  +++ +  L P++   YVL+SN++     WD    +R LM ++ ++K PGYS
Sbjct: 733 HRNVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMKDKKVQKIPGYS 792

Query: 305 WV 306
           WV
Sbjct: 793 WV 794



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 1/182 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ + WN ++ G+   G    A+  F  MR +G D ++ T+   +      
Sbjct: 202 REVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAE 261

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +    G Q+H L  K G +  V V N LV MYA C  + +A ++F  M   DLV+WN ++
Sbjct: 262 ADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMI 321

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            GC  +G   +A++LF  MQK+ ++PD  T   +L A        +G + + Y++RN A 
Sbjct: 322 SGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAH 381

Query: 195 LE 196
           ++
Sbjct: 382 VD 383



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 120/243 (49%), Gaps = 7/243 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      QNV+ + ++ + +  + +I+G+      E A+K F  +   GI  +   +
Sbjct: 394 YFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMV 453

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + A   ++  + G+++H  + K  Y+   +V++ L+ MY+ CG ++ ++ +FS M  
Sbjct: 454 ASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSA 513

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D V+WNS++   A +G   EA+ LF QM    +K +  T   +LSAC     I  G + 
Sbjct: 514 KDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEI 573

Query: 186 FYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
             ++       P RA+ +  +A++ + G+ G L  A      M      S + +++SA  
Sbjct: 574 HGIIIKG----PIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVS-WNSIISAYG 628

Query: 244 VHG 246
            HG
Sbjct: 629 AHG 631



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    +   ++  +   + ++WN +I+G    G  + AL+ F +M+++G+  D  T+
Sbjct: 293 YAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTL 352

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A+  ++GFK+GK++H  I +     +VF+ + LV +Y  C  +  A  VF +   
Sbjct: 353 ASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKS 412

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            D+V  ++++ G   +  S  AV++F  +    IKP+       L AC     +  G + 
Sbjct: 413 IDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQEL 472

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
           + Y+++N       R    +A++ +  + G L+ +    + MS
Sbjct: 473 HGYVLKNAYE---GRCYVESALMDMYSKCGRLDLSHYMFSKMS 512



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 102/228 (44%), Gaps = 5/228 (2%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           + WN +I GF   G    A+  + +M    +    D  T+  +V +   +     G+ +H
Sbjct: 111 LPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVH 170

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
                +G D +++V + L+ MYA  G ++ A +VF  MDERD V WN ++ G    G   
Sbjct: 171 RTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVA 230

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205
            AV LF  M+ +   P+  T    LS C     +  G+Q  + +     LEP  A   T 
Sbjct: 231 SAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQ-LHTLAVKYGLEPEVAVANT- 288

Query: 206 IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           +V +  +   L EA      M R+     +  ++S C  +G  + A+R
Sbjct: 289 LVSMYAKCQCLEEAWRLFGLMPRD-DLVTWNGMISGCVQNGLVDDALR 335



 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 9/134 (6%)

Query: 99  VQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQM- 154
           +Q RLV MY +     DA  VFSS+        + WN L+ G    G+ R AV  + +M 
Sbjct: 78  LQTRLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMW 137

Query: 155 -QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY-TAIVGLLGR 212
              +  +PDG T   V+ +C   G +  G     + R   +L   R  +  +A++ +   
Sbjct: 138 AHPSSPRPDGHTLPYVVKSCAALGALHLGR---LVHRTTRALGLDRDMYVGSALIKMYAD 194

Query: 213 AGFLNEAESFINSM 226
           AG L+ A    + M
Sbjct: 195 AGLLDGAREVFDGM 208


>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 168/301 (55%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R     D   V+  +  +N ISW A+I GF      E+AL+CF EM+ +G+  DY T+
Sbjct: 171 YMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTV 230

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A   +     G  +H L+    + +NV V N L+ MY+ CG I+ A +VF  M +
Sbjct: 231 IAVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQ 290

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R LVSWNS+++G A +G + EA+  F  MQ+   KPDG ++   L AC HAG I +GL+ 
Sbjct: 291 RTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRI 350

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+    +  PR EHY  +V L  RAG L EA + + +M   P   +  +LL+AC+  
Sbjct: 351 FEHMKRVRRIL-PRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQ 409

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN  +A      +++L     + YVLLSN+  A   WD A  +R  M  RGI+KKPG+S 
Sbjct: 410 GNIGLAENVMNYLIELDSGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSS 469

Query: 306 V 306
           +
Sbjct: 470 I 470



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 114/286 (39%), Gaps = 67/286 (23%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI---SGFKEGKQM 84
           +SW   IA +C  G   +A   F +MR+A I+ ++ T  +++ A       S    G  +
Sbjct: 57  VSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTAI 116

Query: 85  HALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG- 142
           HA + K+G D N V V   L+ MYA CG +  A   F  M  R+LVSWN+++ G   +G 
Sbjct: 117 HAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGK 176

Query: 143 ------------------------------YSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
                                         Y  EA++ F +MQ + + PD  T + V++A
Sbjct: 177 FEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAA 236

Query: 173 CCHAGFIDKGLQYFYLM-----RNDASLEPPRAEHYT----------------------- 204
           C + G +  GL    L+     RN+  +     + Y+                       
Sbjct: 237 CANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSW 296

Query: 205 -AIVGLLGRAGFLNEAESFINSMSR---NPGPSVYKALLSACQVHG 246
            +I+      G  +EA S+ NSM      P    Y   L AC   G
Sbjct: 297 NSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAG 342



 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
           +VSW + +      G+  +A   F QM++  I+P+  TF+ +LSAC H
Sbjct: 56  IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAH 103


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 175/305 (57%), Gaps = 3/305 (0%)

Query: 3   ILTYSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           I +Y +C   LD+   V+   R+ + IS   ++        GE A+K F +M + G++ D
Sbjct: 451 IDSYWKC-GQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPD 509

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            F ++S++ A   +S +++GKQ+HA + K  + S+VF  N LV+ YA CG+I DA+  FS
Sbjct: 510 SFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFS 569

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + ER +VSW++++ G A HG+ + A+ LF +M    + P+  T   VLSAC HAG +D 
Sbjct: 570 GLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDD 629

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
             +YF  M+    ++    EHY  ++ +LGRAG L +A   +N+M      +V+ ALL A
Sbjct: 630 AKKYFESMKETFGIDRTE-EHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGA 688

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
            +VH + E+   +A+++  L P     +VLL+N   +   WD+   +R LM +  ++K+P
Sbjct: 689 SRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEP 748

Query: 302 GYSWV 306
             SWV
Sbjct: 749 AMSWV 753



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 126/264 (47%), Gaps = 12/264 (4%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN +SWN +I+ +        A+  F EM  +G   + F  + +V A       + G+Q+
Sbjct: 168 RNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQV 227

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H  + + GY+ +VF  N LV MY+  G I  A  VF  M   D+VSWN+ + GC  HG+ 
Sbjct: 228 HGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHD 287

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHY 203
             A++L  QM+ + + P+  T   VL AC  AG  + G Q + ++++  A  +   A   
Sbjct: 288 HRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVA--- 344

Query: 204 TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV-----RSAKRV 258
             +V +  + GFL++A    + M R     ++ AL+S C  H  R   V     R  K  
Sbjct: 345 VGLVDMYAKHGFLDDARKVFDFMPRRD-LILWNALISGCS-HDGRHGEVLSLFHRMRKEG 402

Query: 259 LDLWPNDPAIY-VLLSNVSKATDC 281
           LDL  N   +  VL S  S    C
Sbjct: 403 LDLDVNRTTLASVLKSTASSEAIC 426



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 8/167 (4%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +   + +SWNA I+G    G   +AL+   +M+ +G+  + FT++S++ A     
Sbjct: 261 TVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAG 320

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            F  G+Q+H  + K   D + FV   LV MYA  G ++DA KVF  M  RDL+ WN+L+ 
Sbjct: 321 AFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALIS 380

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPD--GTTFLVVL------SACCH 175
           GC+H G   E + LF +M+K  +  D   TT   VL       A CH
Sbjct: 381 GCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICH 427



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 131/270 (48%), Gaps = 9/270 (3%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY--FTITSIVGA 71
           D + V+  +  R+ I WNA+I+G  + G   + L  F  MR+ G+D+D    T+ S++ +
Sbjct: 359 DARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKS 418

Query: 72  IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
                     +Q+HAL  KIG  S+  V N L+  Y  CG ++ A KVF      D++S 
Sbjct: 419 TASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISS 478

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMR 190
            +++   +   +  +A++LF QM +  ++PD      +L+AC      ++G Q + +L++
Sbjct: 479 TTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIK 538

Query: 191 NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREI 250
              + +        A+V    + G + +A+   + +    G   + A++     HG+ + 
Sbjct: 539 RQFTSDVFAG---NALVYAYAKCGSIEDADMAFSGLPER-GIVSWSAMIGGLAQHGHGKR 594

Query: 251 AVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
           A+    R+LD  + PN   +  +LS  + A
Sbjct: 595 ALDLFHRMLDEGVAPNHITLTSVLSACNHA 624



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 119/260 (45%), Gaps = 17/260 (6%)

Query: 2   QILT-YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
            +LT YSRC      + V+  +     +SW++++  + N G    AL  F  MR  G+  
Sbjct: 42  HLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPC 101

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           + F +  +   +      + G Q+HAL        +VFV N LV +Y   G +++A ++F
Sbjct: 102 NEFALPVV---LKCAPDVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMF 158

Query: 121 SSM----DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
                   ER+ VSWN+++     +  S +A+ +F +M  +  +P+   F  V++AC  +
Sbjct: 159 DEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGS 218

Query: 177 GFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV- 234
             ++ G Q +  ++R     +   A    A+V +  + G +  A +    M   P   V 
Sbjct: 219 RDLEAGRQVHGAVVRTGYEKDVFTA---NALVDMYSKLGDIEMAATVFEKM---PAADVV 272

Query: 235 -YKALLSACQVHGNREIAVR 253
            + A +S C  HG+   A+ 
Sbjct: 273 SWNAFISGCVTHGHDHRALE 292



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           TI S +   G       G  +H+ + K G  +     N L+ +Y+ C   + A  VF  +
Sbjct: 6   TIGSALARFGTSRSLFAGAHLHSHLLKSGLLAGF--SNHLLTLYSRCRLPSAARAVFDEI 63

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
            +   VSW+SL+   +++G  R+A+  F  M+   +  +     VVL
Sbjct: 64  PDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVL 110


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 168/304 (55%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+ C    D   V+      N + W A++ G+      E ALK F EM + G+  + 
Sbjct: 229 ITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQ 288

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            + TS + +   +     G+++H    K+G +++VFV N L+ MY  CG +ND   +F  
Sbjct: 289 SSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKR 348

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ++++VSWNS+++GCA HG    A+  F QM ++ ++PD  TF  +LSAC H+G   KG
Sbjct: 349 ISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKG 408

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
              F     + S E  + +HY  +V +LGR+G L EAE  I +M       V+  LLSAC
Sbjct: 409 RCLFKYFSENKSAE-VKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSAC 467

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            +H   E+A R+AK ++DL P+  + YVLLSN+  +   W D   IR  M  RGI K+PG
Sbjct: 468 TMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPG 527

Query: 303 YSWV 306
            SW+
Sbjct: 528 RSWI 531



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 113/235 (48%), Gaps = 5/235 (2%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT--SIVGA 71
           D   ++  +  RN ISW ++I G    G  E+AL  F +M   G+++   + T   ++ A
Sbjct: 137 DGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITA 196

Query: 72  IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
               S   +G Q+HA +FK+GY  + ++   L+  YA C  + D+ +VF      ++V W
Sbjct: 197 CANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIW 256

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
            +L+ G   +    +A+++F +M +  + P+ ++F   L++CC    +D G +  +    
Sbjct: 257 TALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGRE-IHTAAV 315

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
              LE       + IV +  R G LN+       +S+    S + +++  C  HG
Sbjct: 316 KLGLETDVFVGNSLIV-MYYRCGNLNDGVVIFKRISKKNIVS-WNSVIVGCAQHG 368



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 89/173 (51%), Gaps = 16/173 (9%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++  +  ++ +SWN++I G  +      A K F EM +           S+V    +I+
Sbjct: 47  QLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPE----------RSVVSWTTMIN 96

Query: 77  GFKEGKQMH---ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           GF +  ++     L +K+ +  ++   N +++ Y   G + D  ++F  M  R+++SW S
Sbjct: 97  GFLQFGKIEVAEGLFYKMPF-RDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTS 155

Query: 134 LLLGCAHHGYSREAVQLFEQMQ--KTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++ G   HG S EA+ LF QM     E+KP  +T+  V++AC +A  + +G+Q
Sbjct: 156 MIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQ 208


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/288 (36%), Positives = 170/288 (59%), Gaps = 1/288 (0%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           +  +  R+ +SW A+I G+  L   ++AL  F EM+ + I  D FT+ S++ A   +   
Sbjct: 220 FHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGAL 279

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           + G+ +   I K    ++ FV N L+ MY  CG +  A  +F+++ +RD  +W ++++G 
Sbjct: 280 ELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGL 339

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP 198
           A +G   EA+ +F QM K  + PD  T++ VLSAC H G +D+G ++F  M     +EP 
Sbjct: 340 AINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPN 399

Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258
            A HY  +V LLG+AG L EA   I +M   P   V+ ALL AC++H + E+A R+ +++
Sbjct: 400 IA-HYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQI 458

Query: 259 LDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           L+L PN+ A+YVL  N+  A + WD   ++R +M +RGI+K PG S +
Sbjct: 459 LELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLI 506



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 48/215 (22%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++ ++   +  SWN +  G+  +   +  +  + EM +  +  D +T   +       
Sbjct: 68  RQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRS 127

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI---------------------- 113
              + G+++H  + K G DSNVF  N L+ MY++CG I                      
Sbjct: 128 VALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMI 187

Query: 114 --------------------------NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
                                     + A K F  M ERD VSW +++ G       +EA
Sbjct: 188 SGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEA 247

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + LF +MQ ++IKPD  T + VL+AC   G ++ G
Sbjct: 248 LMLFREMQTSKIKPDEFTMVSVLTACAQLGALELG 282



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 82/166 (49%), Gaps = 4/166 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +     ++++++  R++ +W A++ G    G GE+AL  FS+M +A +  D  T 
Sbjct: 308 YFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTY 367

Query: 66  TSIVGAIGVISGFKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A        EGK+  A +  + G + N+     +V +    G + +A+++  +M 
Sbjct: 368 VGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMP 427

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV 169
            + + + W +LL  C  H  +  A +  EQ+   E++P+     V+
Sbjct: 428 MKPNSIVWGALLGACRIHKDAEMAERAIEQI--LELEPNNGAVYVL 471



 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 8/90 (8%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAIC-----GAINDANKVFSSMDERDLVSWNSLLL 136
           KQ+H+   K G   N  +QN+++   + C     G +  A ++F ++ E  + SWN +  
Sbjct: 31  KQIHSRTIKTGIICNPIIQNKIL---SFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFK 87

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
           G +     +  V L+ +M +  +KPD  T+
Sbjct: 88  GYSRIACPKLGVSLYLEMLERNVKPDCYTY 117


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 177/302 (58%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  +    + +++ +R R+ ++W A+I G+   G    AL+ F  M   G + + +T+
Sbjct: 353 YTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTL 412

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD- 124
            +++     ++  + GKQ+HA   K G  S   V N L+ MYA  G IN A +VF   + 
Sbjct: 413 AAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNG 472

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++++VSW S+++  A HG  +EA+ LFE+M    +KPD  T++ VLSAC H G +++G +
Sbjct: 473 KKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRK 532

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           Y+ +M     +EP  + HY  ++ L GRAG L EA  FI SM   P    + +LL++C++
Sbjct: 533 YYNMMTEVHEIEPTLS-HYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKI 591

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N ++A  +A+R+L + P +   Y+ L+NV  A   W++A   R LM +RG+RK+ G S
Sbjct: 592 HKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGIS 651

Query: 305 WV 306
           W+
Sbjct: 652 WI 653



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 134/309 (43%), Gaps = 48/309 (15%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           + +SW AII G+   G  + A+  F++M    +    FT+++++ +         G+++H
Sbjct: 106 DPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIH 165

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV-------------------------- 119
           + + K+G  S V V   L+ MYA CG    A  V                          
Sbjct: 166 SFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFE 225

Query: 120 -----FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSAC 173
                F  M +RD+VSWNS++ G +  GY+ EA+ +F +M  +  +KPD  T   +LSAC
Sbjct: 226 LAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSAC 285

Query: 174 CHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFI-NSMSRNPG 231
            +   ++ G Q + Y++R +            A++ +  ++G +  A   + ++ + N  
Sbjct: 286 ANLEKLNIGKQIHAYILRAETETSGAVG---NALISMYAKSGGVEIARLIVEHNRTSNLN 342

Query: 232 PSVYKALLSACQVHGN----REIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGD 287
              + +LL      GN    REI  +   R +  W      YV           W+DA +
Sbjct: 343 IIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYV-------QNGLWNDALE 395

Query: 288 IRTLMYNRG 296
           +  LM N G
Sbjct: 396 LFRLMVNEG 404



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 120/277 (43%), Gaps = 36/277 (12%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVISG 77
           +  +  R+ +SWN++I+G+   G   +AL  FS+M  +  +  D FT+ SI+ A   +  
Sbjct: 231 FEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEK 290

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI------------------------ 113
              GKQ+HA I +   +++  V N L+ MYA  G +                        
Sbjct: 291 LNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLL 350

Query: 114 ---------NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164
                      A ++F+ + +RD+V+W ++++G   +G   +A++LF  M     +P+  
Sbjct: 351 DGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSY 410

Query: 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
           T   +LS       ++ G Q             P   +  A++ +  + G +N A+   +
Sbjct: 411 TLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVAKRVFD 468

Query: 225 SMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDL 261
             +       + +++ A   HG  + A+   +R+L +
Sbjct: 469 LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSV 505



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G+ +H  I K G    V++ N L+  YA  G++  A+ VF  M  +   SWN+L+ G A 
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
            G    + +L  +M       D  ++  ++      G  D  +  F  M
Sbjct: 89  QGNFEVSRRLLYEMPDC----DPVSWTAIIVGYNQFGLFDNAIWMFAKM 133


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 169/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    + + V   + + + +S N IIAG    G  E AL+ F  MR  G+  D  T 
Sbjct: 284 YMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTF 343

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + +   ++   +G+Q+H  + K G D  V V   LV MY+ CG + D+ +VF     
Sbjct: 344 VSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCG 403

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D    ++++     HG+ ++A++LF+QM     +P   TFL +L AC H+G  ++G+  
Sbjct: 404 SDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDC 463

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM     ++P   +HYT +V LLGR+G L+EAE+ I SM   P   ++K LLSAC+  
Sbjct: 464 FELMTKTYGMQPS-VKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQ 522

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++A R AKRV++L P+D A YVLLSN+   +  W D  ++R  M +  +RK+PG SW
Sbjct: 523 KNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSW 582

Query: 306 V 306
           V
Sbjct: 583 V 583



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 130/277 (46%), Gaps = 13/277 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN  +WNA++AG  NLG  E++L  F +MR+ G+  D F + S+      +
Sbjct: 193 RKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGL 252

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+HA + + G D ++ V + L  MY  CG + +   V   +    +VS N+++
Sbjct: 253 RDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTII 312

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G   +G S  A++ F  M+   +  D  TF+  +S+C     + +G Q +  +M+    
Sbjct: 313 AGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVD 372

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
              P     T +V +  R G L ++E             +  A++SA   HG+ + A+  
Sbjct: 373 KVVPV---MTCLVHMYSRCGCLGDSERVFFGYC-GSDTFLLSAMISAYGFHGHGQKAIEL 428

Query: 255 AKRVLD--LWPNDPAIYVLLSNVS------KATDCWD 283
            K++++    P+D     LL   S      +  DC++
Sbjct: 429 FKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFE 465



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           +Q+HA     G  ++ F  N L+  YA  G +  A ++F  +  R+++SWN L  G   +
Sbjct: 127 RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKN 186

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           G    A +LF++M +  +     T+  +++   + GF ++ L +F  MR +
Sbjct: 187 GDLGGARKLFDEMPERNV----ATWNAMVAGLTNLGFDEESLGFFLDMRRE 233



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 9/169 (5%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMR----QAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           + W+     F +L    +AL+   ++      +G   D FT   ++ A   +      ++
Sbjct: 104 VLWSDAARLFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARE 163

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +   I +     NV   N L   Y   G +  A K+F  M ER++ +WN+++ G  + G+
Sbjct: 164 LFERIPR----RNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGF 219

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN 191
             E++  F  M++  + PD      V   C     +  G Q + Y++R+
Sbjct: 220 DEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRS 268


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 178/307 (57%), Gaps = 7/307 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D   ++  +R ++  SWN+I +     G  +  L+    M  AGI  D  T+
Sbjct: 202 YGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTV 261

Query: 66  TSIVGAIGVISGFKEGKQMHA--LIFKIGYD----SNVFVQNRLVFMYAICGAINDANKV 119
           T+++ A   ++    G+++H   ++  +G D     +V ++N ++ MYA CG++ DA+ V
Sbjct: 262 TTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLV 321

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  M  +D+ SWN +++G   HGY  EA+++F +M + ++KPD  TF+ VLSAC HAGF+
Sbjct: 322 FERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFV 381

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
            +G  +   M++   +  P  EHYT ++ +LGRAG L+EA     +M     P V++ALL
Sbjct: 382 SQGRNFLAQMKSKYDV-APTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALL 440

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           +AC++H +  +A  +A+RV +L P     YVL+SNV  A   +++  ++R  M  + +RK
Sbjct: 441 AACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRK 500

Query: 300 KPGYSWV 306
            PG SW+
Sbjct: 501 TPGCSWI 507



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 122/269 (45%), Gaps = 7/269 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q  +  +  R+ + WNA++ G+  +G  E  L+ F  M    +    FT+T I+    V+
Sbjct: 111 QVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVM 170

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+ +H    K+GYDS V V N L+ MY  C  I DA ++F  M E+D+ SWNS+ 
Sbjct: 171 GDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIX 230

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
                 G     ++L ++M    I+PD  T   VL AC H   +  G + + Y++ +   
Sbjct: 231 SVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLG 290

Query: 195 LEPPRAEHY---TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
            +    +      A++ +  + G + +A      M  N   + +  ++    +HG    A
Sbjct: 291 KDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMX-NKDVASWNIMIMGYGMHGYGNEA 349

Query: 252 VRSAKRV--LDLWPNDPAIYVLLSNVSKA 278
           +    R+  + L P++     +LS  S A
Sbjct: 350 LEMFSRMCEVQLKPDEVTFVGVLSACSHA 378



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 4/178 (2%)

Query: 6   YSRCDSSLDFQNVYSS-VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS+C+      +++S      N  ++NAII+GF   G  E+  + + +MR  G+  D FT
Sbjct: 2   YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFT 61

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
                 AI       E K++H L+FK G + +VF+ + LV  Y   G +  A   F  + 
Sbjct: 62  FPC---AIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELP 118

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            RD+V WN+++ G A  G     ++ F +M    + P   T   +LS     G ++ G
Sbjct: 119 IRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNG 176


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 177/302 (58%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  +    + +++ +R R+ ++W A+I G+   G    AL+ F  M   G + + +T+
Sbjct: 353 YTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTL 412

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD- 124
            +++     ++  + GKQ+HA   K G  S   V N L+ MYA  G IN A +VF   + 
Sbjct: 413 AAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNG 472

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++++VSW S+++  A HG  +EA+ LFE+M    +KPD  T++ VLSAC H G +++G +
Sbjct: 473 KKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRK 532

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           Y+ +M     +EP  + HY  ++ L GRAG L EA  FI SM   P    + +LL++C++
Sbjct: 533 YYNMMTEVHEIEPTLS-HYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKI 591

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N ++A  +A+R+L + P +   Y+ L+NV  A   W++A   R LM +RG+RK+ G S
Sbjct: 592 HKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGIS 651

Query: 305 WV 306
           W+
Sbjct: 652 WI 653



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 134/309 (43%), Gaps = 48/309 (15%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           + +SW AII G+   G  + A+  F++M    +    FT+++++ +         G+++H
Sbjct: 106 DPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIH 165

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV-------------------------- 119
           + + K+G  S V V   L+ MYA CG    A  V                          
Sbjct: 166 SFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFE 225

Query: 120 -----FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSAC 173
                F  M +RD+VSWNS++ G +  GY+ EA+ +F +M  +  +KPD  T   +LSAC
Sbjct: 226 LAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSAC 285

Query: 174 CHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFI-NSMSRNPG 231
            +   ++ G Q + Y++R +            A++ +  ++G +  A   + ++ + N  
Sbjct: 286 ANLEKLNIGKQIHAYILRAETETSGAVG---NALISMYAKSGGVEIARLIVEHNRTSNLN 342

Query: 232 PSVYKALLSACQVHGN----REIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGD 287
              + +LL      GN    REI  +   R +  W      YV           W+DA +
Sbjct: 343 IIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYV-------QNGLWNDALE 395

Query: 288 IRTLMYNRG 296
           +  LM N G
Sbjct: 396 LFRLMVNEG 404



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 120/277 (43%), Gaps = 36/277 (12%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVISG 77
           +  +  R+ +SWN++I+G+   G   +AL  FS+M  +  +  D FT+ SI+ A   +  
Sbjct: 231 FEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEK 290

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI------------------------ 113
              GKQ+HA I +   +++  V N L+ MYA  G +                        
Sbjct: 291 LNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLL 350

Query: 114 ---------NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164
                      A ++F+ + +RD+V+W ++++G   +G   +A++LF  M     +P+  
Sbjct: 351 DGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSY 410

Query: 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
           T   +LS       ++ G Q             P   +  A++ +  + G +N A+   +
Sbjct: 411 TLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVAKRVFD 468

Query: 225 SMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDL 261
             +       + +++ A   HG  + A+   +R+L +
Sbjct: 469 LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSV 505



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G+ +H  I K G    V++ N L+  YA  G++  A+ VF  M  +   SWN+L+ G A 
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
            G    + +L  +M       D  ++  ++      G  D  +  F  M
Sbjct: 89  QGNFEVSRRLLYEMPDC----DPVSWTAIIVGYNQFGLFDNAIWMFAKM 133


>gi|222626043|gb|EEE60175.1| hypothetical protein OsJ_13106 [Oryza sativa Japonica Group]
          Length = 628

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 169/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    + + V   + + + +S N IIAG    G  E AL+ F  MR  G+  D  T 
Sbjct: 218 YMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTF 277

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + +   ++   +G+Q+H  + K G D  V V   LV MY+ CG + D+ +VF     
Sbjct: 278 VSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCG 337

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D    ++++     HG+ ++A++LF+QM     +P   TFL +L AC H+G  ++G+  
Sbjct: 338 SDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDC 397

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM     ++P   +HYT +V LLGR+G L+EAE+ I SM   P   ++K LLSAC+  
Sbjct: 398 FELMTKTYGMQPS-VKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQ 456

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++A R AKRV++L P+D A YVLLSN+   +  W D  ++R  M +  +RK+PG SW
Sbjct: 457 KNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSW 516

Query: 306 V 306
           V
Sbjct: 517 V 517



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 130/277 (46%), Gaps = 13/277 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN  +WNA++AG  NLG  E++L  F +MR+ G+  D F + S+      +
Sbjct: 127 RKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGL 186

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+HA + + G D ++ V + L  MY  CG + +   V   +    +VS N+++
Sbjct: 187 RDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTII 246

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G   +G S  A++ F  M+   +  D  TF+  +S+C     + +G Q +  +M+    
Sbjct: 247 AGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVD 306

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
              P     T +V +  R G L ++E             +  A++SA   HG+ + A+  
Sbjct: 307 KVVPV---MTCLVHMYSRCGCLGDSERVFFGYC-GSDTFLLSAMISAYGFHGHGQKAIEL 362

Query: 255 AKRVLD--LWPNDPAIYVLLSNVS------KATDCWD 283
            K++++    P+D     LL   S      +  DC++
Sbjct: 363 FKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFE 399



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 4/112 (3%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           +Q+HA     G  ++ F  N L+  YA  G +  A ++F  +  R+++SWN L  G   +
Sbjct: 61  RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKN 120

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           G    A +LF++M +  +     T+  +++   + GF ++ L +F  MR + 
Sbjct: 121 GDLGGARKLFDEMPERNV----ATWNAMVAGLTNLGFDEESLGFFLDMRREG 168



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 20/208 (9%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMR----QAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           + W+     F +L    +AL+   ++      +G   D FT   ++ A   +      ++
Sbjct: 38  VLWSDAARLFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARE 97

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +   I +     NV   N L   Y   G +  A K+F  M ER++ +WN+++ G  + G+
Sbjct: 98  LFERIPR----RNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGF 153

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN----DASLEPP 198
             E++  F  M++  + PD      V   C     +  G Q + Y++R+    D  +   
Sbjct: 154 DEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSS 213

Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSM 226
            A  Y        R G L E E+ +  +
Sbjct: 214 LAHMYM-------RCGCLQEGEAVLRML 234


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/283 (36%), Positives = 172/283 (60%), Gaps = 1/283 (0%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           T N +SW A+I+G    G+   +LK F++M+Q G+  +  +IT ++ A   +S  ++GK+
Sbjct: 503 TPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKE 562

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +H L  + G+  +VFV   L+ MY+   ++ +A+KVF  +  + L SWN +++G A  G 
Sbjct: 563 IHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGL 622

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY 203
            +EA+ +F +MQK  + PD  TF  +LSAC ++G I +G +YF  M  D  +  PR EHY
Sbjct: 623 GKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRI-VPRLEHY 681

Query: 204 TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263
             +V LLGRAG+L+EA   I++M   P  +++ ALL +C++H N + A  +AK +  L P
Sbjct: 682 CCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEP 741

Query: 264 NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           N+ A Y+L+ N+    + W+D   +R LM   G+R +  +SW+
Sbjct: 742 NNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWI 784



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 7/232 (3%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F  + SS    + ++WN +++G    G  E+ L     M+  G   +  ++TS++ AI  
Sbjct: 323 FYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISE 382

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +     GK+ H  + + G+D +V+V   L+ MY    ++  A  VF +M  R++ +WNSL
Sbjct: 383 LGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSL 442

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + G +  G   +A++L  QM+K  IKPD  T+  ++S     G    G +   ++    S
Sbjct: 443 VSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGC---GKEALAVLHQTKS 499

Query: 195 LE-PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN---PGPSVYKALLSAC 242
           L   P    +TA++    +AG   ++  F   M +    P  +    LL AC
Sbjct: 500 LGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRAC 551



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 6/226 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSG--EQALKCFSEMRQAGIDIDYF 63
           Y RC        V+  +     + WN  I    NL S   ++ ++ F +M+ + +  +  
Sbjct: 178 YGRCWGLEKANQVFHEMPNPEALLWNEAI--ILNLQSEKLQKGVELFRKMQFSFLKAETA 235

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           TI  ++ A G +      KQ+H  +F+ G DS+V + N L+ MY+  G +  A +VF SM
Sbjct: 236 TIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSM 295

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           + R+  SWNS++   A  G+  +A  LF +++ +++KPD  T+  +LS     G+ ++ L
Sbjct: 296 ENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVL 355

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
                M+ +     P +   T+++  +   GFLN  +     + RN
Sbjct: 356 NILQRMQGEGF--KPNSSSMTSVLQAISELGFLNMGKETHGYVLRN 399



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 122/288 (42%), Gaps = 35/288 (12%)

Query: 25  RNQISWNAIIAGF-CNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           RN + WN+ +  F  + GS    L+ F E+   G+  D    +  +     +     G +
Sbjct: 95  RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGME 154

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +H  + K G+D +V+++  L+  Y  C  +  AN+VF  M   + + WN  ++       
Sbjct: 155 IHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEK 214

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMR----NDASLEPP 198
            ++ V+LF +MQ + +K +  T + VL AC   G ++   Q + Y+ R    +D SL  P
Sbjct: 215 LQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNP 274

Query: 199 RAEHYT------------------------AIVGLLGRAGFLNEAESF---INSMSRNPG 231
               Y+                        +++      GFLN+A S    + S    P 
Sbjct: 275 LISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPD 334

Query: 232 PSVYKALLSACQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSK 277
              +  LLS   +HG +E  +   +R+      PN  ++  +L  +S+
Sbjct: 335 IVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISE 382



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 106/279 (37%), Gaps = 75/279 (26%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +  S    Q V+ +++ RN  +WN++++G+   G  E AL+  ++M + GI  D  T 
Sbjct: 415 YVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTW 474

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
                  G+ISG                             YA+ G   +A  V      
Sbjct: 475 N------GMISG-----------------------------YAMWGCGKEALAVLHQTKS 499

Query: 126 RDL----VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
             L    VSW +L+ G +  G +R++++ F QMQ+  + P+  +   +L AC     + K
Sbjct: 500 LGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQK 559

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA---------------------------- 213
           G +   L   +  +E       TA++ +  ++                            
Sbjct: 560 GKEIHCLSIRNGFIEDVFVA--TALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGF 617

Query: 214 ---GFLNEAESFINSMSR---NPGPSVYKALLSACQVHG 246
              G   EA S  N M +    P    + ALLSAC+  G
Sbjct: 618 AIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSG 656



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 38/205 (18%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+  S  +   V+  ++ +   SWN +I GF   G G++A+  F+EM++ G+  D  T 
Sbjct: 586 YSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITF 645

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++ A        EG +         +DS +     +  +   C  ++           
Sbjct: 646 TALLSACKNSGLIGEGWKY--------FDSMITDYRIVPRLEHYCCMVD----------- 686

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
                    LLG A  GY  EA  L   M    +KPD T +  +L +C     I K L++
Sbjct: 687 ---------LLGRA--GYLDEAWDLIHTM---PLKPDATIWGALLGSC----RIHKNLKF 728

Query: 186 FYL-MRNDASLEPPRAEHYTAIVGL 209
                +N   LEP  + +Y  ++ L
Sbjct: 729 AETAAKNLFKLEPNNSANYILMMNL 753


>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
          Length = 773

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/289 (36%), Positives = 168/289 (58%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  RN +SWN++IAG        +A++ F  M+  G+   + T+T+I+     ++ 
Sbjct: 234 MFDGMPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTA 293

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              GK++HA+I K     +  V N LV MYA CGA++   +VF+ M  +DL SWN+L+ G
Sbjct: 294 LGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITG 353

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G   EA++ F++M  +   PDG TF+ +LS C HAG  D G + F +M+ D  +  
Sbjct: 354 YAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDHGIS- 412

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P  EHY  +V +LGRAG + EA   + +M   P  S++ +LL++C++HGN  +A   AKR
Sbjct: 413 PTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKR 472

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +L PN+   YV+LSN+      W+    +R  M  RG+ K+ G SW+
Sbjct: 473 LFELEPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWL 521



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 106/251 (42%), Gaps = 5/251 (1%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           W A+  G+   G  ++AL  + EM      +  F  +  + A   +   + G+ +HA + 
Sbjct: 145 WVAMGIGYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLRTGRAVHAQVL 204

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
           K   D +  V N L+ +Y+  G   +A ++F  M  R+LVSWNSL+ G        EA++
Sbjct: 205 KATEDPDQVVNNALLRLYSEDGCFEEALRMFDGMPHRNLVSWNSLIAGLVKKEGVFEAIE 264

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL 209
            F  MQ   +     T   +L  C     +  G +   ++    S   P A    ++V +
Sbjct: 265 AFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVK--STAKPDAPVLNSLVDM 322

Query: 210 LGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL--DLWPNDPA 267
             + G ++      N M +    + +  L++   ++G    A+ S + ++     P+   
Sbjct: 323 YAKCGAMDYCRRVFNGM-QGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGIT 381

Query: 268 IYVLLSNVSKA 278
              LLS  S A
Sbjct: 382 FIALLSGCSHA 392



 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 82/171 (47%), Gaps = 10/171 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +    + V++ ++ ++  SWN +I G+   G   +A++ F EM  +G   D  T 
Sbjct: 323 YAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITF 382

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVFSSM 123
            +++          +G ++  ++ K+ +  +  V++   LV +    G I +A ++  +M
Sbjct: 383 IALLSGCSHAGLADDGCRLFEMM-KMDHGISPTVEHYACLVDVLGRAGRIKEALEIVKNM 441

Query: 124 DERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKT--EIKPDGTTFLVVLS 171
             +   S W SLL  C  HG     V L E + K   E++P+     V+LS
Sbjct: 442 PFKPTGSIWGSLLNSCRLHGN----VPLAEAVAKRLFELEPNNAGNYVMLS 488



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 95  SNVFVQNRLVFMYAICGAINDANKVFSSMDER-DLVS--WNSLLLGCAHHGYSREAVQLF 151
           +N  ++ +L+ ++++CG +++A +VF    E  DL    W ++ +G + +GY +EA+ L+
Sbjct: 106 NNPTLKGKLITLFSVCGRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLLY 165

Query: 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            +M     +     F + L AC   G +  G
Sbjct: 166 YEMVCQFGQLGNFAFSMALKACSDLGDLRTG 196


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 168/304 (55%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+ C    D   V+      N + W A++ G+      E ALK F EM + G+  + 
Sbjct: 245 ITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQ 304

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            + TS + +   +     G+++H    K+G +++VFV N L+ MY  CG +ND   +F  
Sbjct: 305 SSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKR 364

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ++++VSWNS+++GCA HG    A+  F QM ++ ++PD  TF  +LSAC H+G   KG
Sbjct: 365 ISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKG 424

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
              F     + S E  + +HY  +V +LGR+G L EAE  I +M       V+  LLSAC
Sbjct: 425 RCLFKYFSENKSAE-VKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSAC 483

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            +H   E+A R+AK ++DL P+  + YVLLSN+  +   W D   IR  M  RGI K+PG
Sbjct: 484 TMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPG 543

Query: 303 YSWV 306
            SW+
Sbjct: 544 RSWI 547



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 113/235 (48%), Gaps = 5/235 (2%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT--SIVGA 71
           D   ++  +  RN ISW ++I G    G  E+AL  F +M   G+++   + T   ++ A
Sbjct: 153 DGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITA 212

Query: 72  IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
               S   +G Q+HA +FK+GY  + ++   L+  YA C  + D+ +VF      ++V W
Sbjct: 213 CANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIW 272

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
            +L+ G   +    +A+++F +M +  + P+ ++F   L++CC    +D G +  +    
Sbjct: 273 TALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGRE-IHTAAV 331

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
              LE       + IV +  R G LN+       +S+    S + +++  C  HG
Sbjct: 332 KLGLETDVFVGNSLIV-MYYRCGNLNDGVVIFKRISKKNIVS-WNSVIVGCAQHG 384



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 89/173 (51%), Gaps = 16/173 (9%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++  +  ++ +SWN++I G  +      A K F EM +           S+V    +I+
Sbjct: 63  QLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPE----------RSVVSWTTMIN 112

Query: 77  GFKEGKQMH---ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           GF +  ++     L +K+ +  ++   N +++ Y   G + D  ++F  M  R+++SW S
Sbjct: 113 GFLQFGKIEVAEGLFYKMPF-RDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTS 171

Query: 134 LLLGCAHHGYSREAVQLFEQMQ--KTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++ G   HG S EA+ LF QM     E+KP  +T+  V++AC +A  + +G+Q
Sbjct: 172 MIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQ 224


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 178/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C      + ++  +   + + WN+++AG       ++A   F +MR+ G+    
Sbjct: 432 IGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQ 491

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F+  +++     +S   +G+Q+H+ I + GY ++ FV + L+ MY+ CG ++ A  VF  
Sbjct: 492 FSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDM 551

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  ++ V+WN ++ G A +G   EAV L+E M  +  KPDG TF+ VL+AC H+G +D G
Sbjct: 552 MLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTG 611

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           ++ F  M+ +  +E P  +HYT I+  LGRAG L+EAE  I+ M     P +++ LLS+C
Sbjct: 612 IKIFNSMQQEHGVE-PLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSC 670

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +V+ +  +A R+A+ +  L P + A YVLL+N+  +   WDDA  +R LM    + K PG
Sbjct: 671 RVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPG 730

Query: 303 YSWV 306
           YSW+
Sbjct: 731 YSWI 734



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 124/275 (45%), Gaps = 27/275 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D    +  V   N++S+ A++ G  +     +A + F  M +  I +D  ++
Sbjct: 153 YAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSL 212

Query: 66  TSIVGAIG--------------VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICG 111
           +S++G                 V+S    G+Q+H L  K G++S++ + N L+ MYA  G
Sbjct: 213 SSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNG 272

Query: 112 AINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            ++ A  +F +M E  +VSWN ++ G      S +A++  ++MQ    +PD  T++ +L 
Sbjct: 273 NMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLV 332

Query: 172 ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM---SR 228
           AC  +G I+ G Q F        +  P    +  I+    +     EA      M   S 
Sbjct: 333 ACIKSGDIEAGRQMF------DGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSV 386

Query: 229 NPGPSVYKALLSACQ----VHGNREIAVRSAKRVL 259
           +P  +    +LS+      + G R++   S K V 
Sbjct: 387 HPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVF 421



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 4/182 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C++    + ++  +  R+  +WNAI+  +C     E A   F+EM +  I + + T+
Sbjct: 50  YAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNI-VSWNTL 108

Query: 66  TSIV---GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            S +   GA G +   + G++ H +  KIG D+N++V N L+ MYA C  I DA + F  
Sbjct: 109 ISALTRNGACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGD 168

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + E + VS+ +++ G A      EA +LF  M +  I  D  +   VL  C   G  + G
Sbjct: 169 VPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFG 228

Query: 183 LQ 184
           L 
Sbjct: 229 LH 230



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 89/156 (57%)

Query: 29  SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
           SWN I++G+    + ++A+K F EM+   +  D  T+  I+ ++  +   + G+Q+HA+ 
Sbjct: 357 SWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVS 416

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
            K  + +++++ + L+ MY+ CG +  A ++F  + E D+V WNS++ G + +   +EA 
Sbjct: 417 QKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAF 476

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             F++M++  + P   ++  VLS C     + +G Q
Sbjct: 477 TFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQ 512



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 84/213 (39%), Gaps = 34/213 (15%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK +HA + +     + F+ NRL+  YA C AI+ + ++F  M +RD+ +WN++L     
Sbjct: 24  GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83

Query: 141 HGYSREAVQLFEQMQKTEI----------KPDGTTFLVVLSAC---CHAGFIDKGLQYFY 187
                +A  LF +M +  I            +G    +V   C   CH   I  GL    
Sbjct: 84  ASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVECGRRCHGISIKIGLDNNI 143

Query: 188 LMRN-------------DA-----SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
            + N             DA      +  P    +TA++G L  +  +NEA      M RN
Sbjct: 144 YVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRN 203

Query: 230 P---GPSVYKALLSACQVHGNREIAVRSAKRVL 259
                     ++L  C   G  E  +  +  VL
Sbjct: 204 RIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVL 236


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 175/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y +C    D   V+    + + I+  ++I        GE A+K F EM + G++ D 
Sbjct: 446 IDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDP 505

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F ++S++ A   +S +++GKQ+HA + K  + S+ F  N LV+ YA CG+I DA   FSS
Sbjct: 506 FVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSS 565

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ER +VSW++++ G A HG+ + A++LF +M    I P+  T   VL AC HAG +D+ 
Sbjct: 566 LPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEA 625

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M+    ++    EHY+ ++ LLGRAG L++A   +NSM      S++ ALL A 
Sbjct: 626 KRYFNSMKEMFGIDRTE-EHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGAS 684

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH + E+   +A+++  L P     +VLL+N   +   W++   +R LM +  I+K+P 
Sbjct: 685 RVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPA 744

Query: 303 YSWV 306
            SW+
Sbjct: 745 MSWI 748



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 126/240 (52%), Gaps = 11/240 (4%)

Query: 14  DFQNVYSSVRT-RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           D + V++   + RN +SWN +++ +        A++ F EM  +GI    F  + +V A 
Sbjct: 153 DARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNAC 212

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
                 + G+Q+HA++ ++GYD +VF  N LV MY   G ++ A+ +F  M + D+VSWN
Sbjct: 213 TGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWN 272

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN 191
           +L+ GC  +G+   A++L  QM+ + + P+  T   +L AC  AG  D G Q + ++++ 
Sbjct: 273 ALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKA 332

Query: 192 DASLEPPRAEHYTAI--VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNRE 249
           +A      ++ Y  +  V +  +  FL++A    + M       +  AL+S C  HG R 
Sbjct: 333 NAD-----SDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRD-LILCNALISGCS-HGGRH 385



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 88/155 (56%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +   + +SWNA+I+G    G   +A++   +M+ +G+  + FT++SI+ A      
Sbjct: 259 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGA 318

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F  G+Q+H  + K   DS+ ++   LV MYA    ++DA KVF  M  RDL+  N+L+ G
Sbjct: 319 FDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISG 378

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           C+H G   EA+ LF +++K  +  + TT   VL +
Sbjct: 379 CSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 132/277 (47%), Gaps = 11/277 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      +  +  +     +SW++++  + N G    A++ F  MR  G+  + F +
Sbjct: 47  YSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFAL 106

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD- 124
             +   +  +   + G Q+HA+    G+ S+VFV N LV MY   G ++DA +VF+  D 
Sbjct: 107 PVV---LKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADS 163

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ER+ VSWN L+     +    +A+Q+F +M  + I+P    F  V++AC  +  I+ G Q
Sbjct: 164 ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQ 223

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            +  ++R     +   A    A+V +  + G ++ A      M  +   S + AL+S C 
Sbjct: 224 VHAMVVRMGYDKDVFTA---NALVDMYMKMGRVDIASVIFEKMPDSDVVS-WNALISGCV 279

Query: 244 V--HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
           +  H +R I +    +   L PN   +  +L   S A
Sbjct: 280 LNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGA 316



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 125/248 (50%), Gaps = 5/248 (2%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + V+  +  R+ I  NA+I+G  + G  ++AL  F E+R+ G+ ++  T+ +++ +  
Sbjct: 356 DARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTA 415

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +      +Q+HAL  KIG+  +  V N L+  Y  C  ++DAN+VF      D+++  S
Sbjct: 416 SLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTS 475

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
           ++   +   +   A++LF +M +  ++PD      +L+AC      ++G Q + +L++  
Sbjct: 476 MITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ 535

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
              +   A    A+V    + G + +AE   +S+    G   + A++     HG+ + A+
Sbjct: 536 FMSD---AFAGNALVYTYAKCGSIEDAELAFSSLPER-GVVSWSAMIGGLAQHGHGKRAL 591

Query: 253 RSAKRVLD 260
               R++D
Sbjct: 592 ELFGRMVD 599



 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           MR AG      TI+  +           G  +HA + K G  S    +N L+  Y+ C  
Sbjct: 1   MRSAG------TISQQLTRYAAAQALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRR 52

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS- 171
              A + F  + +   VSW+SL+   +++G  R A+Q F  M+   +  +     VVL  
Sbjct: 53  PCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC 112

Query: 172 -------ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
                  A  HA  +  G      + N             A+V + G  GF+++A    N
Sbjct: 113 VPDARLGAQVHAMAMATGFGSDVFVAN-------------ALVAMYGGFGFMDDARRVFN 159

Query: 225 SMSRNPGPSVYKALLSA 241
                     +  L+SA
Sbjct: 160 EADSERNAVSWNGLMSA 176


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 167/291 (57%), Gaps = 2/291 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++  +  +N +SW A+I+G+   G G +AL+ F++M    +  D FT +S + A   I+
Sbjct: 279 ELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIA 338

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER-DLVSWNSLL 135
             K GKQ+HA + +I +  N  V + L+ MY+ CG++    KVF  M  + D+V WN+++
Sbjct: 339 SLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTII 398

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
              A HG   EA+Q+ + M ++  KPD  TF+V+L+AC H+G + +GL +F  M  D  +
Sbjct: 399 SALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGI 458

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
            P + EHY  ++ LLGRAG   E    +  M   P   V+ ALL  C++HG+ E+  ++A
Sbjct: 459 VPSQ-EHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAA 517

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +R+++L P     YVLLS++      W+    +R LM  R ++K+   SW+
Sbjct: 518 ERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWL 568



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 119/273 (43%), Gaps = 41/273 (15%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  ++ +SWN ++      G  ++AL+ +SE RQ GI  + F   S  G + V 
Sbjct: 146 RKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGF---SFAGVLTVC 202

Query: 76  SGFKE---GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL---- 128
              KE    +Q+H  I   G+ SNV + + ++  Y  CG + DA K+F  M  RD+    
Sbjct: 203 VKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWT 262

Query: 129 ---------------------------VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
                                      VSW +L+ G A +G   +A++LF +M    ++P
Sbjct: 263 TMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRP 322

Query: 162 DGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220
           D  TF   L AC     +  G Q + YL+R +     P     +A++ +  + G L    
Sbjct: 323 DQFTFSSCLCACASIASLKHGKQIHAYLLRINFQ---PNTIVVSALIDMYSKCGSLGIGR 379

Query: 221 SFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
              + M       ++  ++SA   HG  E A++
Sbjct: 380 KVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQ 412



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 5/159 (3%)

Query: 34  IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY 93
           I   C      +A+     + + G+ +D  T+ S++         +EGK++H  +   G 
Sbjct: 31  IVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGL 90

Query: 94  D-SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
                F+ N L+ MYA CG   +A KVF  M  R+L SWN++L G A  G  + A +LF+
Sbjct: 91  KRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFD 150

Query: 153 QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
           +M + ++    T  +V+  A C  G+ D+ L+++   R 
Sbjct: 151 KMPEKDVVSWNT--MVIAHAQC--GYWDEALRFYSEFRQ 185


>gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera]
          Length = 664

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/290 (36%), Positives = 176/290 (60%), Gaps = 2/290 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++++  R+ ++W  +++G        +A   FSEMR  G+     T + ++GA G ++ 
Sbjct: 342 LFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAY 401

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             +G+Q H L+ K  ++ ++ +QN L+ MYA CG I DA  +FS M  RDL+SWNS+++G
Sbjct: 402 LDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMG 461

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            +HHG + EA+++FE M  +   P+  TFL +LSAC HAG +++G + F  M +  +++ 
Sbjct: 462 FSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFDAMSDVFAIQ- 520

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG-NREIAVRSAK 256
           P+ EHY  +V LLGRAG + EAE FI+ +   P  +++ ALL  C     N  +A R+AK
Sbjct: 521 PQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPDLTIWGALLGVCGFGMINTGVARRAAK 580

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           R+L+L P +   +V+L N+  +     + G +R  M  +G+RK PG SW+
Sbjct: 581 RLLELDPLNAPAHVVLCNIHASIGQRAEEGQLRKEMGLKGVRKVPGCSWI 630



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 25/214 (11%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  RN +++NA+++G+   G    A + F EM +  +     + TS++  +     
Sbjct: 98  LFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNV----VSWTSLLCGLANAGR 153

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             E ++    +F +  + NV   N ++      G + +A +VF+ M  +  VSWN ++ G
Sbjct: 154 IGEARE----LFNVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAG 209

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDASL 195
            A H    EA  LF+ M    +     T+  ++S  C AG + +G   F  M  RN  S 
Sbjct: 210 YAEHSRMEEARVLFDGMGDRNV----VTWTSMISGYCRAGNVQEGYCLFQKMPERNVVS- 264

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
                  +TA++G     GF  EA   +NSMS N
Sbjct: 265 -------WTAMIGGFAWNGFYKEA---LNSMSYN 288



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 12/135 (8%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + +++ +  RN +SWN+++ G    G  E+A + F+EM           + S V    +I
Sbjct: 158 RELFNVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEM----------PVKSQVSWNVMI 207

Query: 76  SGFKEGKQMHA--LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           +G+ E  +M    ++F    D NV     ++  Y   G + +   +F  M ER++VSW +
Sbjct: 208 AGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTA 267

Query: 134 LLLGCAHHGYSREAV 148
           ++ G A +G+ +EA+
Sbjct: 268 MIGGFAWNGFYKEAL 282



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 95/196 (48%), Gaps = 29/196 (14%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  RN ++W ++I+G+C  G+ ++    F +M +  +     + T+++G       
Sbjct: 222 LFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNV----VSWTAMIGGFAWNGF 277

Query: 78  FKEG--------KQMHALI---FKIG--------YDSNVFVQNRLVFMYAI-----CGAI 113
           +KE         +  +++I    +IG        +D+ + V++++ +   I      G I
Sbjct: 278 YKEALNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDT-IPVRDKISWTSMINGYFNVGQI 336

Query: 114 NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
             A  +F++M +RD V+W  ++ G   +    EA  LF +M+   + P  +TF ++L A 
Sbjct: 337 AKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAA 396

Query: 174 CHAGFIDKGLQYFYLM 189
               ++D+G Q+  L+
Sbjct: 397 GAMAYLDQGRQFHCLL 412



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C    D  +++S + +R+ ISWN++I GF + G   +ALK F  M  +G   + 
Sbjct: 428 ISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNS 487

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVF-VQNRL------VFMYAICGAIND 115
            T   I+ A        +G ++   +      S+VF +Q +L      V +    G + +
Sbjct: 488 VTFLGILSACSHAGLLNQGWELFDAM------SDVFAIQPQLEHYVCMVNLLGRAGKVEE 541

Query: 116 ANKVFSSMD-ERDLVSWNSLL----LGCAHHGYSREAVQ 149
           A +  S +  E DL  W +LL     G  + G +R A +
Sbjct: 542 AEEFISKLPFEPDLTIWGALLGVCGFGMINTGVARRAAK 580


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 172/291 (59%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++V+ S+ +++ +SW ++I    + G   +AL+ F+ + +  I+ D  T+ S++ A   +
Sbjct: 507 RHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAAL 566

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S  K+GK++H  + + G+     + N LV MYA CG + +A  +F+ + +RDL+ W S++
Sbjct: 567 SSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMI 626

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
                HG  ++A+ LF +M    + PD  TFL +L AC H+G + +G Q+F +M+N+  L
Sbjct: 627 NANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKL 686

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           E P  EHY  +V LL R+  L EA  F+ +M   P   V+ ALL AC++H N ++   +A
Sbjct: 687 E-PWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAA 745

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           K++L L   +   YVL+SN   A   W+D  ++R++M    ++KKPG SW+
Sbjct: 746 KKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWI 796



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 20/231 (8%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D   V+  +  R   +WNA+I    + G   +A++ + EMR  G+ +D FT 
Sbjct: 92  YGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTF 151

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS--M 123
             ++ A G     + G ++H +  K GY   VFV N L+ MYA CG +  A  +F S  M
Sbjct: 152 PCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLM 211

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID--K 181
           ++ D VSWNS++      G S EA+ LF +MQ+  ++ +  TF+  L AC    FI   +
Sbjct: 212 EKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGR 271

Query: 182 GLQYFYLMRNDASLEPPRAEHYT------AIVGLLGRAGFLNEAESFINSM 226
           G+    L  N          H+T      A++ +    G + +AE    SM
Sbjct: 272 GIHAVILKSN----------HFTDVYVSNALIAMYANCGQMEDAERVFKSM 312



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 101/184 (54%), Gaps = 2/184 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSS--VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           I  Y++C      + ++ S  +   + +SWN+II+     G   +AL  F  M++ G++ 
Sbjct: 190 IAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVES 249

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           + +T  S + A    +  K G+ +HA+I K  + ++V+V N L+ MYA CG + DA +VF
Sbjct: 250 NTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVF 309

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            SM  +D VSWN+LL G   +    +A+  F+ MQ +  KPD  + L +++A   +  + 
Sbjct: 310 KSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLL 369

Query: 181 KGLQ 184
            G++
Sbjct: 370 AGME 373



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 129/256 (50%), Gaps = 6/256 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C       + +  +  ++ ISW  IIAG+        AL    +++   +D+D   I
Sbjct: 397 YGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMI 456

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A   +   K  K++H  + K G  +++ +QN +V +Y     ++ A  VF S++ 
Sbjct: 457 GSILLACSGLKSEKLIKEIHGYVLKGGL-ADILIQNAIVNVYGELALVDYARHVFESINS 515

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D+VSW S++  C H+G + EA++LF  + +T I+PD  T + VL A      + KG + 
Sbjct: 516 KDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEI 575

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + +L+R    LE   A    ++V +  R G +  A +  N + +     ++ ++++A  +
Sbjct: 576 HGFLIRKGFFLEGLIA---NSLVDMYARCGTMENARNIFNYVKQR-DLILWTSMINANGM 631

Query: 245 HGNREIAVRSAKRVLD 260
           HG  + A+    ++ D
Sbjct: 632 HGCGKDAIDLFSKMTD 647



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+ C    D + V+ S+  ++ +SWN +++G         A+  F +M+ +G   D 
Sbjct: 293 IAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQ 352

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            ++ +++ A G  +    G ++HA   K G DSN+ + N L+ MY  C  +      F  
Sbjct: 353 VSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEY 412

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           M E+DL+SW +++ G A +    +A+ L  ++Q  ++  D      +L AC
Sbjct: 413 MPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLAC 463



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 1/98 (1%)

Query: 77  GFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              +G+Q+HA   K   Y  +VF+  + V MY  CG+  DA KVF  M ER + +WN+++
Sbjct: 61  ALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMI 120

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
             C   G   EA++L+++M+   +  D  TF  VL AC
Sbjct: 121 GACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKAC 158



 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 4/139 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC +  + +N+++ V+ R+ I W ++I      G G+ A+  FS+M    +  D+ T 
Sbjct: 598 YARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITF 657

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVFSSM 123
            +++ A        EGKQ H  I K  Y    + ++   LV + A   ++ +A     +M
Sbjct: 658 LALLYACSHSGLVVEGKQ-HFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNM 716

Query: 124 D-ERDLVSWNSLLLGCAHH 141
             E     W +LL  C  H
Sbjct: 717 PIEPSAEVWCALLGACRIH 735


>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
 gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
 gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
          Length = 533

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 173/304 (56%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y +C S    + V+  +  +N ++W A+I G+   G  +++L  F EM  AGI+ D 
Sbjct: 217 IVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDA 276

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+  ++ A   I   +    + + + K   + N  V   LV M+A CG +++A   F  
Sbjct: 277 ATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEALSAFRE 336

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + + D   + +L+ G A HG+++ A+Q+FE+MQ   + PD  TF+ VL+AC HAG +DKG
Sbjct: 337 IAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITFVGVLTACSHAGLVDKG 396

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L Y+  M     +E  RA+HY  +V +LGRAG L EA   + +M   P P    ALLSAC
Sbjct: 397 LDYWEAMVKYYGME-RRADHYACVVDMLGRAGRLEEAFEMVQTMPMGPHPGALGALLSAC 455

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + HGN EIA   A ++ +L P++   Y++LSN+    + W++A  IR++M  R   K+PG
Sbjct: 456 KTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQWEEAERIRSVMRTRLPFKQPG 515

Query: 303 YSWV 306
            SWV
Sbjct: 516 SSWV 519



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 64/296 (21%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  ++R  S  D ++++ ++ +R Q+SWNA++  + N G    A + F +M         
Sbjct: 155 LCAHARLASVPDAESLFVAMPSRTQVSWNAMVVVYVNAGDVSSARRVFDQMPT------- 207

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
                                          DS  +  + L+  Y  CG++  A +VF  
Sbjct: 208 ------------------------------RDSTSW--SVLIVGYCKCGSMRSAREVFDR 235

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH------A 176
           M  ++LV+W +++ G A  G  +E++ LF +M+   I+PD  T + V+SA         A
Sbjct: 236 MPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELA 295

Query: 177 GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYK 236
           G++   +    + RND  L        TA+V +  + G ++EA S    +++ P    Y 
Sbjct: 296 GWVGSYVDKKRIERNDKVL--------TALVDMHAKCGNVDEALSAFREIAQ-PDAYPYT 346

Query: 237 ALLSACQVHGNREIAVRSAKRV--LDLWPNDPAIYVLLSN-------VSKATDCWD 283
           AL+S    HG+ ++A++  +R+    +WP DP  +V +         V K  D W+
Sbjct: 347 ALISGLAAHGHAKLALQVFERMQAQSVWP-DPITFVGVLTACSHAGLVDKGLDYWE 401


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 175/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y +C    D   V+    + + I+  ++I        GE A+K F EM + G++ D 
Sbjct: 446 IDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDP 505

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F ++S++ A   +S +++GKQ+HA + K  + S+ F  N LV+ YA CG+I DA   FSS
Sbjct: 506 FVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSS 565

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ER +VSW++++ G A HG+ + A++LF +M    I P+  T   VL AC HAG +D+ 
Sbjct: 566 LPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEA 625

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M+    ++    EHY+ ++ LLGRAG L++A   +NSM      S++ ALL A 
Sbjct: 626 KRYFNSMKEMFGIDRTE-EHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGAS 684

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH + E+   +A+++  L P     +VLL+N   +   W++   +R LM +  I+K+P 
Sbjct: 685 RVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPA 744

Query: 303 YSWV 306
            SW+
Sbjct: 745 MSWI 748



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 126/240 (52%), Gaps = 11/240 (4%)

Query: 14  DFQNVYSSVRT-RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           D + V++   + RN +SWN +++ +        A++ F EM  +GI    F  + +V A 
Sbjct: 153 DARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNAC 212

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
                 + G+Q+HA++ ++GYD +VF  N LV MY   G ++ A+ +F  M + D+VSWN
Sbjct: 213 TGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWN 272

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN 191
           +L+ GC  +G+   A++L  QM+ + + P+  T   +L AC  AG  D G Q + ++++ 
Sbjct: 273 ALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKA 332

Query: 192 DASLEPPRAEHYTAI--VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNRE 249
           +A      ++ Y  +  V +  +  FL++A    + M       +  AL+S C  HG R 
Sbjct: 333 NAD-----SDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRD-LILCNALISGCS-HGGRH 385



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 133/277 (48%), Gaps = 11/277 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + V+  +     +SW++++  + N G    A++ F  MR  G+  + F +
Sbjct: 47  YSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFAL 106

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD- 124
             +   +  +   + G Q+HA+    G+ S+VFV N LV MY   G ++DA +VF+  D 
Sbjct: 107 PVV---LKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADS 163

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ER+ VSWN L+     +    +A+Q+F +M  + I+P    F  V++AC  +  I+ G Q
Sbjct: 164 ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQ 223

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            +  ++R     +   A    A+V +  + G ++ A      M  +   S + AL+S C 
Sbjct: 224 VHAMVVRMGYDKDVFTA---NALVDMYMKMGRVDIASVIFEKMPDSDVVS-WNALISGCV 279

Query: 244 V--HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
           +  H +R I +    +   L PN   +  +L   S A
Sbjct: 280 LNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGA 316



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 88/155 (56%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +   + +SWNA+I+G    G   +A++   +M+ +G+  + FT++SI+ A      
Sbjct: 259 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGA 318

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F  G+Q+H  + K   DS+ ++   LV MYA    ++DA KVF  M  RDL+  N+L+ G
Sbjct: 319 FDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISG 378

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           C+H G   EA+ LF +++K  +  + TT   VL +
Sbjct: 379 CSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 125/248 (50%), Gaps = 5/248 (2%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + V+  +  R+ I  NA+I+G  + G  ++AL  F E+R+ G+ ++  T+ +++ +  
Sbjct: 356 DARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTA 415

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +      +Q+HAL  KIG+  +  V N L+  Y  C  ++DAN+VF      D+++  S
Sbjct: 416 SLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTS 475

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
           ++   +   +   A++LF +M +  ++PD      +L+AC      ++G Q + +L++  
Sbjct: 476 MITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ 535

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
              +   A    A+V    + G + +AE   +S+    G   + A++     HG+ + A+
Sbjct: 536 FMSD---AFAGNALVYTYAKCGSIEDAELAFSSLPER-GVVSWSAMIGGLAQHGHGKRAL 591

Query: 253 RSAKRVLD 260
               R++D
Sbjct: 592 ELFGRMVD 599



 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 29/197 (14%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           MR AG      TI+  +           G  +HA + K G  S    +N L+  Y+ C  
Sbjct: 1   MRSAG------TISQQLTRYAAAQALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRR 52

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS- 171
              A +VF  + +   VSW+SL+   +++G  R A+Q F  M+   +  +     VVL  
Sbjct: 53  PCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC 112

Query: 172 -------ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
                  A  HA  +  G      + N             A+V + G  GF+++A    N
Sbjct: 113 VPDARLGAQVHAMAMATGFGSDVFVAN-------------ALVAMYGGFGFMDDARRVFN 159

Query: 225 SMSRNPGPSVYKALLSA 241
                     +  L+SA
Sbjct: 160 EADSERNAVSWNGLMSA 176


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 169/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    + + V   + + + +S N IIAG    G  E AL+ F  MR  G+  D  T 
Sbjct: 218 YMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTF 277

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + +   ++   +G+Q+H  + K G D  V V   LV MY+ CG + D+ +VF     
Sbjct: 278 VSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCG 337

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D    ++++     HG+ ++A++LF+QM     +P   TFL +L AC H+G  ++G+  
Sbjct: 338 SDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDC 397

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM     ++P   +HYT +V LLGR+G L+EAE+ I SM   P   ++K LLSAC+  
Sbjct: 398 FELMTKTYGMQPS-VKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQ 456

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++A R AKRV++L P+D A YVLLSN+   +  W D  ++R  M +  +RK+PG SW
Sbjct: 457 KNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSW 516

Query: 306 V 306
           V
Sbjct: 517 V 517



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 130/277 (46%), Gaps = 13/277 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN  +WNA++AG  NLG  E++L  F +MR+ G+  D F + S+      +
Sbjct: 127 RKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGL 186

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+HA + + G D ++ V + L  MY  CG + +   V   +    +VS N+++
Sbjct: 187 RDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTII 246

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G   +G S  A++ F  M+   +  D  TF+  +S+C     + +G Q +  +M+    
Sbjct: 247 AGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVD 306

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
              P     T +V +  R G L ++E             +  A++SA   HG+ + A+  
Sbjct: 307 KVVPV---MTCLVHMYSRCGCLGDSERVFFGYC-GSDTFLLSAMISAYGFHGHGQKAIEL 362

Query: 255 AKRVLD--LWPNDPAIYVLLSNVS------KATDCWD 283
            K++++    P+D     LL   S      +  DC++
Sbjct: 363 FKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFE 399



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 4/112 (3%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           +Q+HA     G  ++ F  N L+  YA  G +  A ++F  +  R+++SWN L  G   +
Sbjct: 61  RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKN 120

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           G    A +LF++M +  +     T+  +++   + GF ++ L +F  MR + 
Sbjct: 121 GDLGGARKLFDEMPERNV----ATWNAMVAGLTNLGFDEESLGFFLDMRREG 168



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 20/208 (9%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMR----QAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           + W+     F +L    +AL+   ++      +G   D FT   ++ A   +      ++
Sbjct: 38  VLWSDAARLFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARE 97

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +   I +     NV   N L   Y   G +  A K+F  M ER++ +WN+++ G  + G+
Sbjct: 98  LFERIPR----RNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGF 153

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN----DASLEPP 198
             E++  F  M++  + PD      V   C     +  G Q + Y++R+    D  +   
Sbjct: 154 DEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSS 213

Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSM 226
            A  Y        R G L E E+ +  +
Sbjct: 214 LAHMYM-------RCGCLQEGEAVLRML 234


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 178/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C      + ++  +   + + WN+++AG       ++A   F +MR+ G+    
Sbjct: 461 IGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQ 520

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F+  +++     +S   +G+Q+H+ I + GY ++ FV + L+ MY+ CG ++ A  VF  
Sbjct: 521 FSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDM 580

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  ++ V+WN ++ G A +G   EAV L+E M  +  KPDG TF+ VL+AC H+G +D G
Sbjct: 581 MLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTG 640

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           ++ F  M+ +  +E P  +HYT I+  LGRAG L+EAE  I+ M     P +++ LLS+C
Sbjct: 641 IKIFNSMQQEHGVE-PLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSC 699

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +V+ +  +A R+A+ +  L P + A YVLL+N+  +   WDDA  +R LM    + K PG
Sbjct: 700 RVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPG 759

Query: 303 YSWV 306
           YSW+
Sbjct: 760 YSWI 763



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 90/180 (50%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y +     D   +++ +  RN +SWN +I+     G  ++AL  +  M + G    +FT
Sbjct: 80  AYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFT 139

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + S++ A G +   + G++ H +  KIG D+N++V N L+ MYA C  I DA + F  + 
Sbjct: 140 LASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVP 199

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E + VS+ +++ G A      EA +LF  M +  I  D  +   VL  C   G  + GL 
Sbjct: 200 EPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLH 259



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 124/275 (45%), Gaps = 27/275 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D    +  V   N++S+ A++ G  +     +A + F  M +  I +D  ++
Sbjct: 182 YAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSL 241

Query: 66  TSIVGAIG--------------VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICG 111
           +S++G                 V+S    G+Q+H L  K G++S++ + N L+ MYA  G
Sbjct: 242 SSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNG 301

Query: 112 AINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            ++ A  +F +M E  +VSWN ++ G      S +A++  ++MQ    +PD  T++ +L 
Sbjct: 302 NMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLV 361

Query: 172 ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM---SR 228
           AC  +G I+ G Q F        +  P    +  I+    +     EA      M   S 
Sbjct: 362 ACIKSGDIEAGRQMF------DGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSV 415

Query: 229 NPGPSVYKALLSACQ----VHGNREIAVRSAKRVL 259
           +P  +    +LS+      + G R++   S K V 
Sbjct: 416 HPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVF 450



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 89/156 (57%)

Query: 29  SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
           SWN I++G+    + ++A+K F EM+   +  D  T+  I+ ++  +   + G+Q+HA+ 
Sbjct: 386 SWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVS 445

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
            K  + +++++ + L+ MY+ CG +  A ++F  + E D+V WNS++ G + +   +EA 
Sbjct: 446 QKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAF 505

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             F++M++  + P   ++  VLS C     + +G Q
Sbjct: 506 TFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQ 541



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 93/242 (38%), Gaps = 63/242 (26%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN-------------------------- 114
           GK +HA + +     + F+ NRL+  YA C AI+                          
Sbjct: 24  GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83

Query: 115 -----DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV 169
                DA+ +F+ M ER++VSWN+L+     +G+ ++A+ ++ +M +    P   T   V
Sbjct: 84  ASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASV 143

Query: 170 LSAC-----------CHAGFIDKGLQYFYLMRN-------------DA-----SLEPPRA 200
           LSAC           CH   I  GL     + N             DA      +  P  
Sbjct: 144 LSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNE 203

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMSRNP---GPSVYKALLSACQVHGNREIAVRSAKR 257
             +TA++G L  +  +NEA      M RN          ++L  C   G  E  +  +  
Sbjct: 204 VSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSND 263

Query: 258 VL 259
           VL
Sbjct: 264 VL 265


>gi|218193985|gb|EEC76412.1| hypothetical protein OsI_14066 [Oryza sativa Indica Group]
          Length = 628

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 169/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    + + V   + + + +S N IIAG    G  E AL+ F  MR  G+  D  T 
Sbjct: 218 YMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTF 277

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + +   ++   +G+Q+H  + K G D  V V   LV MY+ CG + D+ +VF     
Sbjct: 278 VSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCG 337

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D    ++++     HG+ ++A++LF+QM     +P   TFL +L AC H+G  ++G+  
Sbjct: 338 SDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDC 397

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM     ++P   +HYT +V LLGR+G L+EAE+ I SM   P   ++K LLSAC+  
Sbjct: 398 FELMTKTYGIQPS-VKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQ 456

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++A R AKRV++L P+D A YVLLSN+   +  W D  ++R  M +  +RK+PG SW
Sbjct: 457 KNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSW 516

Query: 306 V 306
           V
Sbjct: 517 V 517



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 130/277 (46%), Gaps = 13/277 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN  +WNA++AG  NLG  E++L  F +MR+ G+  D F + S+      +
Sbjct: 127 RKLFDEMPERNVATWNAMVAGLTNLGFDEESLGLFLDMRREGMHPDEFGLGSVSRCCAGL 186

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q+HA + + G D ++ V + L  MY  CG + +   V   +    +VS N+++
Sbjct: 187 RDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTII 246

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G   +G S  A++ F  M+   +  D  TF+  +S+C     + +G Q +  +M+    
Sbjct: 247 AGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVD 306

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
              P     T +V +  R G L ++E             +  A++SA   HG+ + A+  
Sbjct: 307 KVVPV---MTCLVHMYSRCGCLGDSERVFFGYC-GSDTFLLSAMISAYGFHGHGQKAIEL 362

Query: 255 AKRVLD--LWPNDPAIYVLLSNVS------KATDCWD 283
            K++++    P+D     LL   S      +  DC++
Sbjct: 363 FKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFE 399



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 10/157 (6%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMR----QAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           + W+     F +L    +AL+   ++      +G   D FT   ++ A   +      ++
Sbjct: 38  VLWSDAARLFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARE 97

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +   I +     NV   N L   Y   G +  A K+F  M ER++ +WN+++ G  + G+
Sbjct: 98  LFERIPR----RNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGF 153

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             E++ LF  M++  + PD    L  +S CC AG  D
Sbjct: 154 DEESLGLFLDMRREGMHPD-EFGLGSVSRCC-AGLRD 188


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/297 (36%), Positives = 171/297 (57%), Gaps = 1/297 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + ++  +  R+ ISWN +I G+ ++ S ++AL  F EM  +G++    T 
Sbjct: 306 YSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITF 365

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ +   +     GK +HA I K     +  +   L+ +YA CG I  A +VF  M  
Sbjct: 366 LSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKI 425

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           + L SWN+++ G A HG + +A +LF +M    I+P+  TF+ +LSAC HAG +D G Q+
Sbjct: 426 KSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQF 485

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  +  P+++HY  ++ LLGRAG   EAES + +M   P  +++ +LL AC+ H
Sbjct: 486 FSSMVQDYKIS-PKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDH 544

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           G  E+    A+R+ +L P++P  YVLLSN+      WDD   IRT + +RG++K PG
Sbjct: 545 GRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPG 601



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 96/167 (57%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  ++ +SWNA+IAG+  +G  ++AL  F +MR+A +  +  TI S++ A    
Sbjct: 215 RQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQS 274

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +    G  M + I   G  SN+ + N L+ MY+ CG +  A ++F  M ERD++SWN ++
Sbjct: 275 NALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMI 334

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            G  H    +EA+ LF +M  + ++P   TFL +L +C H G ID G
Sbjct: 335 GGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLG 381



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 31/197 (15%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           ++++S+   N   WN++I G     S   AL  F  M  +G++ + +T   ++ +   ++
Sbjct: 84  SLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLA 143

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN------------------- 117
              EGKQ+HA + K+G+ S+VF+   L+ MYA  G +N+A                    
Sbjct: 144 SAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIA 203

Query: 118 ------------KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
                       ++F  M  +D+VSWN+++ G A  G S+EA+ LFE M+K  + P+ +T
Sbjct: 204 GYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNEST 263

Query: 166 FLVVLSACCHAGFIDKG 182
            + VLSAC  +  +D G
Sbjct: 264 IVSVLSACAQSNALDLG 280



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 109/248 (43%), Gaps = 33/248 (13%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAIC--GAINDANKVFSSMDERDLVSWNSLLLGCA 139
           KQ+HA I K G  + +F  ++L+   A+   G I+ A  +F+S++E +L  WNS++ G +
Sbjct: 46  KQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLS 105

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----CHAG----------------F 178
                  A+  F +M  + ++P+  TF  +L +C      H G                F
Sbjct: 106 MSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVF 165

Query: 179 IDKGLQYFYLMR---NDASLEPPR-----AEHYTAIVGLLGRAGFLNEAESFINSMSRNP 230
           I   L   Y      N+A L   +     A  +TA++      G+++ A    + M    
Sbjct: 166 IHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKD 225

Query: 231 GPSVYKALLSACQVHGNRE-IAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIR 289
             S    +    Q+  ++E + +    R  ++ PN+  I  +LS  ++ ++  D    +R
Sbjct: 226 VVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQ-SNALDLGNSMR 284

Query: 290 TLMYNRGI 297
           + + +RG+
Sbjct: 285 SWIEDRGL 292


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 102/279 (36%), Positives = 172/279 (61%), Gaps = 1/279 (0%)

Query: 28   ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
            ++WN +I+G+   G G++AL  F++M+Q G+  +  +IT ++ A   +S  ++GK++H L
Sbjct: 727  VTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCL 786

Query: 88   IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
              + G+  +VFV   L+ MY+   ++ +A+KVF  +  + L SWN +++G A  G  +EA
Sbjct: 787  SIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEA 846

Query: 148  VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
            + +F +MQK  + PD  TF  +LSAC ++G I +G +YF  M  D  +  PR EHY  +V
Sbjct: 847  ISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRI-VPRLEHYCCMV 905

Query: 208  GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267
             LLGRAG+L+EA   I++M   P  +++ ALL +C++H N + A  +AK +  L PN+ A
Sbjct: 906  DLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSA 965

Query: 268  IYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             Y+L+ N+    + W+D   +R LM   G+R +  +SW+
Sbjct: 966  NYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWI 1004



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 5/193 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSG--EQALKCFSEMRQAGIDIDYF 63
           Y RC        V+  +     + WN  I    NL S   ++ ++ F +M+ + +  +  
Sbjct: 568 YGRCWGLEKANQVFHEMPNPEALLWNEAI--ILNLQSEKLQKGVELFRKMQFSFLKAETA 625

Query: 64  TITSIVGA-IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           TI  ++ A I  +     GK+ H  + + G+D +V+V   L+ MY    ++  A  VF +
Sbjct: 626 TIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDN 685

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  R++ +WNSL+ G +  G   +A++L  QM+K  IKPD  T+  ++S     G   + 
Sbjct: 686 MKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEA 745

Query: 183 LQYFYLMRNDASL 195
           L +F  M+ +  +
Sbjct: 746 LAFFAQMQQEGVM 758



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 109/232 (46%), Gaps = 7/232 (3%)

Query: 25  RNQISWNAIIAGF-CNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           RN + WN+ +  F  + GS    L+ F E+   G+  D    +  +     +     G +
Sbjct: 485 RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGME 544

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +H  + K G+D +V+++  L+  Y  C  +  AN+VF  M   + + WN  ++       
Sbjct: 545 IHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEK 604

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSAC-CHAGFIDKGLQ-YFYLMRNDASLEPPRAE 201
            ++ V+LF +MQ + +K +  T + VL A     GF++ G + + Y++RN    +     
Sbjct: 605 LQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVG- 663

Query: 202 HYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
             T+++ +  +   L  A++  ++M +N     + +L+S     G  E A+R
Sbjct: 664 --TSLIDMYVKNHSLTSAQAVFDNM-KNRNIFAWNSLVSGYSFKGMFEDALR 712



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 38/205 (18%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+  S  +   V+  ++ +   SWN +I GF   G G++A+  F+EM++ G+  D  T 
Sbjct: 806 YSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITF 865

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++ A        EG +         +DS +     +  +   C  ++           
Sbjct: 866 TALLSACKNSGLIGEGWKY--------FDSMITDYRIVPRLEHYCCMVD----------- 906

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
                    LLG A  GY  EA  L   M    +KPD T +  +L +C     I K L++
Sbjct: 907 ---------LLGRA--GYLDEAWDLIHTMP---LKPDATIWGALLGSCR----IHKNLKF 948

Query: 186 FYL-MRNDASLEPPRAEHYTAIVGL 209
                +N   LEP  + +Y  ++ L
Sbjct: 949 AETAAKNLFKLEPNNSANYILMMNL 973


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 167/301 (55%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+   +   V+  +  RN  SWN++I+GF       +AL  F  M++ G+   + T+
Sbjct: 75  YTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTL 134

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+I+     ++    GK++HA I K     +V V N LV MY  CG ++   ++F  M  
Sbjct: 135 TTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRS 194

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +DL SWN++L G A +GY R A+ LF +M    I+PD  TF+ +LS C HAG  + G + 
Sbjct: 195 KDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKL 254

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ M  D  + P   EHY  +V +LGRAG ++ A   + +M      S++ +LL++C++H
Sbjct: 255 FHRMEMDFGVSPS-LEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCRLH 313

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
               +A   A R+ +L P +P  YV+LSN+      WD    +R +M  R IRK+ G SW
Sbjct: 314 NEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAGMWDSVNMVREMMQTRRIRKEAGCSW 373

Query: 306 V 306
           +
Sbjct: 374 I 374



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 102/245 (41%), Gaps = 5/245 (2%)

Query: 36  GFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDS 95
           G+   G   +AL  + EM    ++   F  ++ + A   +     G+ +HA + K     
Sbjct: 4   GYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGP 63

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           +  V N L+ +Y  C   N+  KVF  M ER++ SWNSL+ G        EA+ +F +MQ
Sbjct: 64  DQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQ 123

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF 215
           +  +     T   +L  C     +  G +    +   A    P      ++V +  + G 
Sbjct: 124 REGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSA--RRPDVLVLNSLVDMYVKCGV 181

Query: 216 LNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLS 273
           ++      + M R+   + +  +L+   ++G   +A+     +    + P+D     LLS
Sbjct: 182 VDYGRRLFDGM-RSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLS 240

Query: 274 NVSKA 278
             S A
Sbjct: 241 GCSHA 245


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 175/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C S  D + V+  +  +  + WN IIAG+   G  E+AL  + EMR +G+ +D+
Sbjct: 118 IDMYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDH 177

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT + IV     ++  +  KQ HA + + G+ S++     LV  Y+  G I DA  VF  
Sbjct: 178 FTFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDK 237

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  ++++SWN+L+ G  +HG   EAV+LFEQM +  + P+  TFL VLSAC H+G  ++G
Sbjct: 238 MASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERG 297

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + F  M  D  ++ PRA HY  ++ L+GR G L+EA + I      P  +++ ALL+AC
Sbjct: 298 WEIFQSMGRDNRIK-PRAMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTAC 356

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +V+ N E+   +A+++  + P+    Y++L N+  +     +A D+   +  +G+R +P 
Sbjct: 357 RVNENFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPV 416

Query: 303 YSWV 306
            SW+
Sbjct: 417 CSWI 420



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 138/279 (49%), Gaps = 7/279 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +L + +C   +D + ++  +  RN +SWN II+G  ++G   +A + F  M +   D   
Sbjct: 17  LLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLNMWEEFSDAGS 76

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT   ++ A   +     G+Q+HA   K+G   ++FV   L+ MY+ CG+I DA  VF  
Sbjct: 77  FTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEE 136

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E+  V WN+++ G A HGYS EA+ ++ +M+ + +K D  TF +++  C     ++  
Sbjct: 137 MPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLASVEHA 196

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            Q +  L+R+    +       TA+V    + G + +A    + M+     S + AL+  
Sbjct: 197 KQAHAALIRHGFGSDIVAN---TALVDFYSKWGRIEDARHVFDKMASKNVIS-WNALIGG 252

Query: 242 CQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
              HG    AV   ++++   + PN      +LS  S +
Sbjct: 253 YGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHS 291



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%)

Query: 92  GYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLF 151
           G++ + +++NR++ M+  CG + DA ++F  M ER+LVSWN+++ G    G   EA +LF
Sbjct: 5   GFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLF 64

Query: 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             M +        TF V++ A      I  G Q
Sbjct: 65  LNMWEEFSDAGSFTFAVMIRASAGLELISIGRQ 97


>gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
           mitochondrial-like [Vitis vinifera]
          Length = 743

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 106/290 (36%), Positives = 176/290 (60%), Gaps = 2/290 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++++  R+ ++W  +++G        +A   FSEMR  G+     T + ++GA G ++ 
Sbjct: 421 LFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAY 480

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             +G+Q H L+ K  ++ ++ +QN L+ MYA CG I DA  +FS M  RDL+SWNS+++G
Sbjct: 481 LDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMG 540

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            +HHG + EA+++FE M  +   P+  TFL +LSAC HAG +++G + F  M +  +++ 
Sbjct: 541 FSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFDAMSDVFAIQ- 599

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG-NREIAVRSAK 256
           P+ EHY  +V LLGRAG + EAE FI+ +   P  +++ ALL  C     N  +A R+AK
Sbjct: 600 PQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPDLTIWGALLGVCGFGMINTGVARRAAK 659

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           R+L+L P +   +V+L N+  +     + G +R  M  +G+RK PG SW+
Sbjct: 660 RLLELDPLNAPAHVVLCNIHASIGQRAEEGQLRKEMGLKGVRKVPGCSWI 709



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 112/220 (50%), Gaps = 16/220 (7%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + +++ +  RN +SWN+++ G    G  E+A + F+EM           + S V    +I
Sbjct: 158 RELFNVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEM----------PVKSQVSWNVMI 207

Query: 76  SGFKEGKQMHA--LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           +G+ E  +M    ++F    D NV     ++  Y   G + +   +F  M ER++VSW +
Sbjct: 208 AGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTA 267

Query: 134 LLLGCAHHGYSREAVQLFEQMQKT-EIKPDGTTFLVVLSACCHAGFIDKGLQYF-YLMRN 191
           ++ G A +G+ +EA+ LF +M+   ++KP+  TF+ +  AC   GF   G+Q+  +L+ N
Sbjct: 268 MIGGFAWNGFYKEALLLFLEMKGNYDMKPNDETFISLAYACAGIGFPHLGMQFHAHLIIN 327

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAES--FINSMSRN 229
               +      + +++ +    GF++ A    F NSMS N
Sbjct: 328 CWDYDDYDGRLFKSLIHMYSMFGFMDFAWYIFFRNSMSYN 367



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 27/255 (10%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  RN +++NA+++G+   G    A + F EM +  +     + TS++  +     
Sbjct: 98  LFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNV----VSWTSLLCGLANAGR 153

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             E ++    +F +  + NV   N ++      G + +A +VF+ M  +  VSWN ++ G
Sbjct: 154 IGEARE----LFNVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAG 209

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDASL 195
            A H    EA  LF+ M    +     T+  ++S  C AG + +G   F  M  RN  S 
Sbjct: 210 YAEHSRMEEARVLFDGMGDRNV----VTWTSMISGYCRAGNVQEGYCLFQKMPERNVVS- 264

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN----PGPSVYKALLSACQVHGNREIA 251
                  +TA++G     GF  EA      M  N    P    + +L  AC   G   + 
Sbjct: 265 -------WTAMIGGFAWNGFYKEALLLFLEMKGNYDMKPNDETFISLAYACAGIGFPHLG 317

Query: 252 VR-SAKRVLDLWPND 265
           ++  A  +++ W  D
Sbjct: 318 MQFHAHLIINCWDYD 332



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C    D  +++S + +R+ ISWN++I GF + G   +ALK F  M  +G   + 
Sbjct: 507 ISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNS 566

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVF-VQNRL------VFMYAICGAIND 115
            T   I+ A        +G ++   +      S+VF +Q +L      V +    G + +
Sbjct: 567 VTFLGILSACSHAGLLNQGWELFDAM------SDVFAIQPQLEHYVCMVNLLGRAGKVEE 620

Query: 116 ANKVFSSMD-ERDLVSWNSLL----LGCAHHGYSREAVQ 149
           A +  S +  E DL  W +LL     G  + G +R A +
Sbjct: 621 AEEFISKLPFEPDLTIWGALLGVCGFGMINTGVARRAAK 659



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 44/83 (53%)

Query: 107 YAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
           Y   G I  A  +F++M +RD V+W  ++ G   +    EA  LF +M+   + P  +TF
Sbjct: 409 YFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTF 468

Query: 167 LVVLSACCHAGFIDKGLQYFYLM 189
            ++L A     ++D+G Q+  L+
Sbjct: 469 SILLGAAGAMAYLDQGRQFHCLL 491


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 103/292 (35%), Positives = 173/292 (59%), Gaps = 3/292 (1%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++  +  ++ ++W  +++GF       +A+  F +M++ G++ D  T+  ++ A   + 
Sbjct: 234 ELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLG 293

Query: 77  GFKEGKQMHALIFK--IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
             K    +  +  K   G   +V V + L+ MY+ CG++ DA +VF  M ER++ S++S+
Sbjct: 294 AAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSM 353

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           +LG A HG   +A++LF++M KTEIKP+  TF+ VL+AC HAG +++G Q F LM     
Sbjct: 354 ILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYG 413

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           ++ P A+HYT +V LLGRAG L EA   + +M   P   V+ ALL AC++H + +IA  +
Sbjct: 414 IK-PSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIA 472

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           A  + +L P     Y+LL+N+  +   W+D   +R LM  RG+RK P +SW+
Sbjct: 473 ANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWI 524



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 43/300 (14%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           ++++ V   N   +NA+I G+      +++ + +S MR+ G+    FT T++  A G   
Sbjct: 101 SIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKM 160

Query: 77  GFKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               G+Q+H   I   G+  ++ V N ++ MY  CG +    KVF  M  RD++SW  L+
Sbjct: 161 DVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELI 220

Query: 136 L-------------------------------GCAHHGYSREAVQLFEQMQKTEIKPDGT 164
                                           G A +   REA+  FE+MQ+  ++ D  
Sbjct: 221 SAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEI 280

Query: 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY----TAIVGLLGRAGFLNEAE 220
           T + V+SAC   G      +Y   +R+ A       +H     +A++ +  + G + +A 
Sbjct: 281 TLIGVISACAQLG----AAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAY 336

Query: 221 SFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
                M      S Y +++    +HG    A++    ++  ++ PN      +L+  S A
Sbjct: 337 RVFQGMKERNVYS-YSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHA 395



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S  D   V+  ++ RN  S++++I GF   G    A+K F EM +  I  +  T 
Sbjct: 326 YSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTF 385

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A       ++G Q+  L+ K  G   +      +V +    G + +A+++  +M 
Sbjct: 386 IGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMP 445

Query: 125 -ERDLVSWNSLLLGCAHH 141
            E     W +LL  C  H
Sbjct: 446 IEPHGGVWGALLGACRIH 463


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 115/316 (36%), Positives = 172/316 (54%), Gaps = 26/316 (8%)

Query: 16  QNVYSSVRTRNQISW----NAIIAGFCNLGSGEQA------------LKCFSEMRQAGID 59
           + V++ V   NQ S     NA+++ +   G  E+A            + C +E R   +D
Sbjct: 379 RQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCITEGRDFPLD 438

Query: 60  ---------IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC 110
                    I   T  S++ A   +    +G+Q+HA+  K G+ S+ FV N LV MY+ C
Sbjct: 439 HRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRC 498

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G + DA + F+ + +R+++SW S++ G A HGY+  A+ LF  M  T +KP+  T++ VL
Sbjct: 499 GYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVL 558

Query: 171 SACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNP 230
           SAC H G + +G +YF  M+ D  L  PR EHY  +V LL R+G + EA  FIN M    
Sbjct: 559 SACSHVGLVREGKEYFRSMQRDHGL-IPRMEHYACMVDLLARSGIVKEALEFINEMPLKA 617

Query: 231 GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRT 290
              V+K LL AC+ H N E+   +AK V++L P DPA YVLLSN+      WD+   IR+
Sbjct: 618 DALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRS 677

Query: 291 LMYNRGIRKKPGYSWV 306
            M +  + K+ G SW+
Sbjct: 678 AMRDNNLNKETGLSWM 693



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 110/219 (50%), Gaps = 14/219 (6%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  +  + W  +I+ +      E+A++ F +  + G + D +T++S++ A   +
Sbjct: 208 RKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTEL 267

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA---ICGAINDANKVFSSMDERDLVSWN 132
              + G Q+H+L  ++G  S+  V   LV MYA   I  A++ ANKVF  M + D++SW 
Sbjct: 268 GSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWT 327

Query: 133 SLLLGCAHHGYSREAVQ-LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMR 190
           +L+ G    G     V  LF +M    IKP+  T+  +L +C      D G Q + ++++
Sbjct: 328 ALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIK 387

Query: 191 NDASLEPPRAEHYT---AIVGLLGRAGFLNEAESFINSM 226
           ++      +A  +T   A+V +   +G + EA    N +
Sbjct: 388 SN------QASAHTVGNALVSMYAESGCMEEARRVFNQL 420



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 17/290 (5%)

Query: 12  SLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGE-QALKCFSEMRQAGIDIDYFTITSIV 69
           ++D+ N V+  +   + ISW A+I+G+   G  E + +  F EM    I  ++ T +SI+
Sbjct: 307 AMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSIL 366

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
            +   IS    G+Q+HA + K    S   V N LV MYA  G + +A +VF+ + ER ++
Sbjct: 367 KSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMI 426

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
                   C   G       L  ++ + ++    +TF  ++SA    G + KG Q  + M
Sbjct: 427 P-------CITEGRD---FPLDHRIVRMDVGISSSTFASLISAAASVGMLTKG-QQLHAM 475

Query: 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG--N 247
              A     R     ++V +  R G+L +A    N + ++     + +++S    HG   
Sbjct: 476 SLKAGFGSDRFVS-NSLVSMYSRCGYLEDACRSFNEL-KDRNVISWTSMISGLAKHGYAE 533

Query: 248 REIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
           R +++     +  + PND     +LS  S      +     R++  + G+
Sbjct: 534 RALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGL 583



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 3/186 (1%)

Query: 6   YSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YSRC +    +NV+  +R  R+ +SW A+ +     G+   +L    EM ++G+  + +T
Sbjct: 94  YSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEMLESGLLPNAYT 153

Query: 65  ITSIVGAIGVISGF-KEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           + +   A      +   G  +  L+ K+G + ++V V + L+ M A  G +  A KVF  
Sbjct: 154 LCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNGDLASARKVFDG 213

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + E+ +V W  L+        + EAV+LF    +   +PD  T   ++SAC   G +  G
Sbjct: 214 LIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLG 273

Query: 183 LQYFYL 188
           LQ   L
Sbjct: 274 LQLHSL 279



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 95/201 (47%), Gaps = 27/201 (13%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---DIDY 62
           YSRC    D    ++ ++ RN ISW ++I+G    G  E+AL  F +M   G+   D+ Y
Sbjct: 495 YSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTY 554

Query: 63  FTITSIVGAIGVISGFKEGKQM-------HALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
             + S    +G++   +EGK+        H LI ++ + +       +V + A  G + +
Sbjct: 555 IAVLSACSHVGLV---REGKEYFRSMQRDHGLIPRMEHYAC------MVDLLARSGIVKE 605

Query: 116 ANKVFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKP-DGTTFLVVLS 171
           A +  + M  + D + W +LL  C  H    + +++ E   K   E++P D   ++++ +
Sbjct: 606 ALEFINEMPLKADALVWKTLLGACRSH----DNIEVGEITAKNVVELEPRDPAPYVLLSN 661

Query: 172 ACCHAGFIDKGLQYFYLMRND 192
               AG  D+  +    MR++
Sbjct: 662 LYADAGLWDEVARIRSAMRDN 682


>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
 gi|194692242|gb|ACF80205.1| unknown [Zea mays]
 gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
          Length = 590

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 107/299 (35%), Positives = 172/299 (57%), Gaps = 1/299 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+R     + ++++  +  RN ISW+ +I G  + G  ++AL+ F  M + G+  D    
Sbjct: 255 YARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAA 314

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              V A   +   ++G+ +H+ + K    S+V VQ  L+ MY  CG ++ A  +F SM E
Sbjct: 315 VGAVSACAQLGALEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAE 374

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R +V+WN +++G   HG+  +AV LF +M+   +  D  + L +L+AC HAG + +GL+ 
Sbjct: 375 RSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTHAGLVSEGLEI 434

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ M+ D  ++ P+ EHY A+V LLGRAG L++A   I +M   P P ++ +LL+AC+ H
Sbjct: 435 FHRMKKDFGID-PKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRSH 493

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
              E+A  S +R+ DL  +D  +YVLLSN+      W D   IR LM + G+RK  G S
Sbjct: 494 SCVELAELSVERLADLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRS 552



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 99/206 (48%), Gaps = 8/206 (3%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           +R+ +SWN+++AG+   G    A + F EM Q     D F+  +++   G   G   G  
Sbjct: 178 SRDLVSWNSMVAGYVGCGEMGLAQEMFDEMPQK----DTFSWATLIDGYGKQGG--AGVD 231

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
               +F    + ++   N ++  YA  G +++A  +F  M ER+++SW+ ++ G    G 
Sbjct: 232 RARELFDQMPERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGE 291

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY 203
           ++EA++ F+ M +  ++PD    +  +SAC   G +++G      +     L     +  
Sbjct: 292 AKEALEYFQSMLRCGLRPDRIAAVGAVSACAQLGALEQGRWLHSYLEKKKLLSDVVVQ-- 349

Query: 204 TAIVGLLGRAGFLNEAESFINSMSRN 229
           TA++ +  + G L+ A     SM+  
Sbjct: 350 TALIDMYVKCGCLDLAMLIFESMAER 375



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
            R+  +WN  I           AL  F+ MR+ G+  D +T  +++ A G   G + G  
Sbjct: 76  ARDPFAWNTAIR-LHAPARPRAALLYFARMRRCGVRPDAYTFPAVLKACGCAPGCRAGLL 134

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD--ERDLVSWNSLL---LGC 138
           +HA   + G  +++F  N L+  Y     I    KVF       RDLVSWNS++   +GC
Sbjct: 135 VHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSRDLVSWNSMVAGYVGC 194

Query: 139 AHHGYSREAVQLFEQMQKTE 158
              G ++E   +F++M + +
Sbjct: 195 GEMGLAQE---MFDEMPQKD 211


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C+   + + ++ S+  ++ +SW+++I+G+      ++ L  F EM+ +G   D  T+
Sbjct: 452 YLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTL 511

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   ++  ++GK +HA I + G   NV +   L+ MY  CG +  A +VF  M E
Sbjct: 512 VSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIE 571

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           + + +WN+L+LG A +G    ++ +F  M+K  + P+  TF+ VL AC H G +D+G  +
Sbjct: 572 KGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHH 631

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           FY M +D  ++ P  +HY  +V LLGRAG L EAE  +N M   P  + + ALL AC+ H
Sbjct: 632 FYSMIHDHKIQ-PNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKH 690

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E+  R  +++++L P+    +VLLSN+  +   WDD  +IR +M    + K PG S 
Sbjct: 691 GDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSM 750

Query: 306 V 306
           +
Sbjct: 751 I 751



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 124/263 (47%), Gaps = 38/263 (14%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++  +  ++ ++W+A+IA F      E+A++ F  M + G+ +D     S + A   + 
Sbjct: 331 KLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLL 390

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               GK +H+L  KIG +S + +QN L++MY+ CG I  A K+F      DL+SWNS++ 
Sbjct: 391 VVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMIS 450

Query: 137 GCAH--------------------------HGYSR-----EAVQLFEQMQKTEIKPDGTT 165
           G                              GY++     E + LF++MQ +  KPD TT
Sbjct: 451 GYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETT 510

Query: 166 FLVVLSACCHAGFIDKG-LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFI 223
            + V+SAC     +++G   + Y+ RN  ++        T ++ +  + G +  A E F 
Sbjct: 511 LVSVISACARLAALEQGKWVHAYIKRNGLTINVILG---TTLIDMYMKCGCVETALEVFY 567

Query: 224 NSMSRNPGPSVYKALLSACQVHG 246
             + +  G S + AL+    ++G
Sbjct: 568 GMIEK--GISTWNALILGLAMNG 588



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 62/124 (50%)

Query: 36  GFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDS 95
            +    S   A   +  M    +  D +T   ++ A  +     E KQ+H  + K+G+DS
Sbjct: 187 AYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDS 246

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           +V+V+N L+  +++C  + DA +VF+     D VSWNS+L G    G   EA  ++ QM 
Sbjct: 247 DVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMP 306

Query: 156 KTEI 159
           +  I
Sbjct: 307 ERSI 310



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 39/177 (22%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           +S C +  D   V++     + +SWN+I+AG+  +G+ E+A   + +M +  I       
Sbjct: 258 FSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSI------- 310

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
                                              N ++ ++ + G + +A K+F  M E
Sbjct: 311 --------------------------------IASNSMIVLFGMRGLVVEACKLFDEMLE 338

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +D+V+W++L+     +    EA++ F  M K  +  D    +  LSAC +   ++ G
Sbjct: 339 KDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG 395


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 173/305 (56%), Gaps = 3/305 (0%)

Query: 3   ILTYSRCDSSLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           +  Y RC  S+DF + ++  +  +  I+WNA+I+G+   G     L  + +M   GI  D
Sbjct: 201 LTMYVRC-GSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPD 259

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             T+  ++ +   +     G+++   I   G+  N F++N L+ MYA CG +  A  +F 
Sbjct: 260 PVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFD 319

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M E++++SW +++ G   HG    AVQLF++M  ++  PDG  F+ VLSAC HAG  +K
Sbjct: 320 GMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEK 379

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           GL YF  M  D  L+P   EHY+ +V LLGRAG L EA   I SMS  P  +V+ ALL A
Sbjct: 380 GLYYFTAMERDYGLQPG-PEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGA 438

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++H N E+A  + ++V++  P +   YVLLSN+       +    +R +M  R ++K+P
Sbjct: 439 CKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEP 498

Query: 302 GYSWV 306
           G S+V
Sbjct: 499 GCSYV 503



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 139/280 (49%), Gaps = 7/280 (2%)

Query: 3   ILTYSRCDSSLDFQNVY-SSVRTRN-QISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           I  Y +C +    + V+  +  +RN  + +NA+IAG+        A+  F +MR+ G+ +
Sbjct: 98  ISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSV 157

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           +  T+  ++           G  +HA   + G D ++ V N L+ MY  CG+++ A K+F
Sbjct: 158 NAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLF 217

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M E+ L++WN+++ G A +G +   + L+ +M+ T I PD  T + VLS+C H G   
Sbjct: 218 DGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHA 277

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
            G +    +        P  ++  A++ +  R G L +A +  + M+     S + A+++
Sbjct: 278 AGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKARAIFDGMTEKNVIS-WTAIIA 334

Query: 241 ACQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
              +HG  E+AV+    ++  D  P+  A   +LS  S A
Sbjct: 335 GYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHA 374



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 13/171 (7%)

Query: 13  LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           LD QN  +S        WNA +         ++AL  + +M  +G   + FT      + 
Sbjct: 15  LDLQNTTAS--------WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSC 66

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF-SSMDERDL-VS 130
             +S    G Q+H  + K G +   FVQ  L+ MY  C  I  A KVF  +   R+L V 
Sbjct: 67  ASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVC 126

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC---HAGF 178
           +N+L+ G + +    +AV LF QM+K  +  +  T L ++  C    H GF
Sbjct: 127 YNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGF 177


>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
 gi|194688792|gb|ACF78480.1| unknown [Zea mays]
          Length = 706

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 170/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        +++ +  R+ + WN++I+G       E+A     +MR+ G+     + 
Sbjct: 362 YSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSY 421

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++     +S   +G+QMHA + K GYD NV+V   L+ MYA  G ++DA   F+ M  
Sbjct: 422 ASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIV 481

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++LV+WN ++ G A +G+  +AV+LFE M  T+ KPD  TF+ VL+ C H+G +D+ + +
Sbjct: 482 KNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTF 541

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M ++  +  P  EHYT ++  L RA    E E+ I  M     P +++ LL+AC VH
Sbjct: 542 FNSMESNYGI-TPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAACVVH 600

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   SAK +  L P +P+ YVLLSN+        DA  +R LM +RG+ K  GYSW
Sbjct: 601 HNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSW 660

Query: 306 V 306
           V
Sbjct: 661 V 661



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 87/152 (57%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN +SWN +IA     GS  +AL+ +  M Q G+    FT+ S++ A G ++   +G++ 
Sbjct: 4   RNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRC 63

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H L  K+G D + FV+N L+ MY  CG++ DA ++F  M   + VS+ +++ G A  G  
Sbjct: 64  HGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAV 123

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
            +A++LF +M +T I+ D      VL AC  A
Sbjct: 124 DDALRLFARMSRTGIRVDPVAVSSVLGACAQA 155



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 120/257 (46%), Gaps = 17/257 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D   ++  + + N++S+ A++ G    G+ + AL+ F+ M + GI +D   +
Sbjct: 86  YTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAV 145

Query: 66  TSIVGAIG--------VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
           +S++GA          V    +  + +HAL+ + G+ S+  V N LV +YA    +++A 
Sbjct: 146 SSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAI 205

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           KVF S+    +VSWN L+ G    G    A+++ E MQ++  +P+  T+  +L++C  A 
Sbjct: 206 KVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKAR 265

Query: 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR---NPGPSV 234
            +      F        +  P    +  ++   G+     E       M      P  + 
Sbjct: 266 DVPSARAMF------DKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTT 319

Query: 235 YKALLSACQVHGNREIA 251
              +LS+C   GN E+ 
Sbjct: 320 LAVILSSCSRLGNFELG 336



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 102/198 (51%), Gaps = 2/198 (1%)

Query: 29  SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
           +WN +++G+      ++ +  F  M+   +  D  T+  I+ +   +  F+ GKQ+H+  
Sbjct: 284 TWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSAS 343

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
            ++   +++FV + L+ +Y+ CG +  A  +F+ M ERD+V WNS++ G A H  S EA 
Sbjct: 344 VRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAF 403

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208
              +QM++  + P  +++  +++ C     I +G Q    +  D   +        +++ 
Sbjct: 404 DFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVG--CSLID 461

Query: 209 LLGRAGFLNEAESFINSM 226
           +  ++G +++A  F N M
Sbjct: 462 MYAKSGNMDDARLFFNCM 479



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 35/167 (20%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+ S+ + + +SWN +I G+  LG  E+A++    M+++G + +  T ++++ +      
Sbjct: 207 VFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASC----- 261

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
                                ++ R          +  A  +F  + +  + +WN+LL G
Sbjct: 262 ---------------------IKAR---------DVPSARAMFDKIPKPSVTTWNTLLSG 291

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
                  +E + LF +MQ   ++PD TT  V+LS+C   G  + G Q
Sbjct: 292 YGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQ 338



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 32/152 (21%)

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--------- 173
           M +R+ VSWN+++   A  G   EA+++++ M +  + P   T   VLSAC         
Sbjct: 1   MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDG 60

Query: 174 --CHA----------GFIDKGLQYFYL--------MRNDASLEPPRAEHYTAIVGLLGRA 213
             CH            F++ GL   Y         +R    +  P    +TA++G L + 
Sbjct: 61  RRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQG 120

Query: 214 GFLNEAESFINSMSRNP---GPSVYKALLSAC 242
           G +++A      MSR      P    ++L AC
Sbjct: 121 GAVDDALRLFARMSRTGIRVDPVAVSSVLGAC 152


>gi|357124385|ref|XP_003563881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 670

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 177/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC      + ++  +  ++ ISW A++  +      ++ L  F EM + G+    
Sbjct: 350 ITVYGRCGDIATAEIIFDLLENKDIISWTALLTCYAQNDLPQETLLFFKEMLRKGLGSPI 409

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F ITS++ A    +    G+Q+H+   K+G D    V+N LV MYA CG+++ A K+F+S
Sbjct: 410 FCITSVLRACSSTTNHAVGRQIHSRAVKLGIDDADSVENALVTMYAKCGSVHIALKIFNS 469

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  R ++SWN+L+   + HG    A+QLF+ MQ+  I PD  TF+ +LS+C   G I +G
Sbjct: 470 MRSRGIISWNALITSFSQHGNEVAAIQLFDLMQEEGICPDDYTFVGLLSSCSRMGLIAEG 529

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF  M+   ++E P+ EHYT +V L  RAG  ++A  FI+++   P   V++ALL++C
Sbjct: 530 CEYFKQMKALYNVE-PKMEHYTCMVDLFARAGRFSDALEFIDALPCQPDQLVWEALLASC 588

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           + HGN E+   +AK++L++ P DP+ Y+ LSN+  +   W++    RT+   + +RK  G
Sbjct: 589 RTHGNVELGRLAAKKILEIRPEDPSPYITLSNIHASVHMWEEKTWDRTVFDFQRVRKYAG 648

Query: 303 YSWV 306
            SWV
Sbjct: 649 SSWV 652



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 119/277 (42%), Gaps = 6/277 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC    +   +   +R  +  S  ++   +   G   +A+  F EM    + ID 
Sbjct: 250 IAMYGRCGGVDEIAKLSCRIR-HDAFSRTSLFVAYARNGYSMEAVWNFREMVMEKMAIDQ 308

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            TITS++     +   +  +++H    K  +  +  + N  + +Y  CG I  A  +F  
Sbjct: 309 STITSLLQVCSSLGQLRLAEEVHCYALKTLFKLDTSLLNATITVYGRCGDIATAEIIFDL 368

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           ++ +D++SW +LL   A +   +E +  F++M +  +         VL AC        G
Sbjct: 369 LENKDIISWTALLTCYAQNDLPQETLLFFKEMLRKGLGSPIFCITSVLRACSSTTNHAVG 428

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            Q           +    E+  A+V +  + G ++ A    NSM R+ G   + AL+++ 
Sbjct: 429 RQIHSRAVKLGIDDADSVEN--ALVTMYAKCGSVHIALKIFNSM-RSRGIISWNALITSF 485

Query: 243 QVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSK 277
             HGN   A++    + +  + P+D     LLS+ S+
Sbjct: 486 SQHGNEVAAIQLFDLMQEEGICPDDYTFVGLLSSCSR 522



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 13/226 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +L+Y R     + + ++  +  RN +S + +I+    LG+  +A   FS+M  +G    Y
Sbjct: 39  LLSYFRSSLPAEARGLFDEMPHRNVVSCSVLISNVSRLGALCEAFLLFSDMLLSGGRGSY 98

Query: 63  -----FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
                F + ++V      S    G Q+HA   K G   +  V   LV MY+ CG ++ + 
Sbjct: 99  DRPNSFALGALVSGCARASDIVAGSQVHASAVKFGVAGDESVAGALVDMYSKCGCVDSSW 158

Query: 118 KVFSSMDERDLVSWNSLLLGCAHH----GYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +VF+   +R +VSW S++    ++    G+   A+ L  +M   +I P   TF  +L   
Sbjct: 159 RVFALSPQRSVVSWTSMIACLVNNDGSSGHRDAALSLLRKMLLLKIWPTNATFSCILKVF 218

Query: 174 CHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218
              G +  G Q +  L++    ++P      TA++ + GR G ++E
Sbjct: 219 DAPGLLPGGKQIHGCLLKMGTEVDPALG---TALIAMYGRCGGVDE 261



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 16/243 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCN----LGSGEQALKCFSEMRQAGI--- 58
           YS+C        V++    R+ +SW ++IA   N     G  + AL    +M    I   
Sbjct: 148 YSKCGCVDSSWRVFALSPQRSVVSWTSMIACLVNNDGSSGHRDAALSLLRKMLLLKIWPT 207

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           +  +  I  +  A G++ G   GKQ+H  + K+G + +  +   L+ MY  CG +++  K
Sbjct: 208 NATFSCILKVFDAPGLLPG---GKQIHGCLLKMGTEVDPALGTALIAMYGRCGGVDEIAK 264

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           + S     D  S  SL +  A +GYS EAV  F +M   ++  D +T   +L  C   G 
Sbjct: 265 L-SCRIRHDAFSRTSLFVAYARNGYSMEAVWNFREMVMEKMAIDQSTITSLLQVCSSLGQ 323

Query: 179 IDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
           +    + + Y ++    L+        A + + GR G +  AE  I  +  N     + A
Sbjct: 324 LRLAEEVHCYALKTLFKLD---TSLLNATITVYGRCGDIATAE-IIFDLLENKDIISWTA 379

Query: 238 LLS 240
           LL+
Sbjct: 380 LLT 382


>gi|354805138|gb|AER41559.1| pentatricopeptide [Oryza australiensis]
          Length = 510

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 173/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    +  +V+ ++  RN ISWNAII  +   G G++AL+ F  M + G   D  T+
Sbjct: 161 YAKCGQVAEASSVFDAMVLRNTISWNAIIVCYGKHGRGKEALEVFVSMMRDGCCPDELTL 220

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ +   ++   E  Q+H+   K G    + V N L+  Y   G + +A + F  +  
Sbjct: 221 ASLLSSCADMAVANEATQLHSYTVKRGLQDFLQVSNALIMAYGKNGFVQEATRTFGMIHN 280

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            DLV+W+S++   A+ G ++ A+ LF++M +  I+ DGT FL VLSACCHAG ++ G +Y
Sbjct: 281 PDLVTWSSMISCFAYLGLAKSAINLFDRMLQQGIQADGTAFLGVLSACCHAGLVEDGFKY 340

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM+ D  ++P   +H   +V LLGRAG + +A  F+ +MS +    V  A LSAC++ 
Sbjct: 341 FLLMKRDYKIDPT-PQHLACLVDLLGRAGRIRDAYEFLVNMSCDANVDVIGAFLSACRMR 399

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN E A  +A R+  L P+DP  Y+L+SN+  A   W D   +R++M +    K PG SW
Sbjct: 400 GNIESAKWAASRLFSLKPDDPINYLLISNMYAAAGAWSDLAKVRSVMRSMCGNKVPGCSW 459

Query: 306 V 306
           +
Sbjct: 460 I 460



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 33/263 (12%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+     R+Q+ WN +++ + + G   +    F  MR++G   D FT ++++      
Sbjct: 62  RRVFDETPLRDQVLWNVMVSCYSSQGLVRECWDVFGSMRRSGFPGDGFTFSALLSVRASS 121

Query: 76  SGFKE--------GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           S   +        G   H ++ ++G   +V V   L+ MYA CG + +A+ VF +M  R+
Sbjct: 122 SSCYDHANLLLLLGSSAHGIVIRLGLQLDVVVATALLDMYAKCGQVAEASSVFDAMVLRN 181

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-----------HA 176
            +SWN++++    HG  +EA+++F  M +    PD  T   +LS+C            H+
Sbjct: 182 TISWNAIIVCYGKHGRGKEALEVFVSMMRDGCCPDELTLASLLSSCADMAVANEATQLHS 241

Query: 177 GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYK 236
             + +GLQ F  + N             A++   G+ GF+ EA      M  NP    + 
Sbjct: 242 YTVKRGLQDFLQVSN-------------ALIMAYGKNGFVQEATRTFG-MIHNPDLVTWS 287

Query: 237 ALLSACQVHGNREIAVRSAKRVL 259
           +++S     G  + A+    R+L
Sbjct: 288 SMISCFAYLGLAKSAINLFDRML 310



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 44/102 (43%)

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
           GA     G      +H    K G  S+  V   L   YA  G ++ A +VF     RD V
Sbjct: 15  GASAGARGHPACAGIHPFAVKSGSRSDARVATALADAYAKSGLVHHARRVFDETPLRDQV 74

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            WN ++   +  G  RE   +F  M+++    DG TF  +LS
Sbjct: 75  LWNVMVSCYSSQGLVRECWDVFGSMRRSGFPGDGFTFSALLS 116


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 103/291 (35%), Positives = 175/291 (60%), Gaps = 2/291 (0%)

Query: 17  NVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           N++   R + + +SWNAI+          + L+ F  M  +  + D+ T+ +++     I
Sbjct: 424 NLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEI 483

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S  K G Q+H   +K G     F++N L+ MYA CG++  A ++F SMD  D+VSW++L+
Sbjct: 484 SSLKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTLI 543

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           +G A  G+  EA+ LF +M+ + I+P+  TF+ VL+AC H G +++GL+ + +M+ +  +
Sbjct: 544 VGYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACSHVGLVEEGLKLYAIMQTEHGI 603

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
            P + EH + +V LL RAG LNEAE FI+ M   P   V+K LLSAC+  GN ++A ++A
Sbjct: 604 SPTK-EHCSCVVDLLARAGHLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVDLAQKAA 662

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +L + P +   +VLL ++  ++  W+DA  +R+ M    ++K PG SW+
Sbjct: 663 ENILKIDPFNSTAHVLLCSMHASSGNWEDAALLRSSMKKHDVKKIPGQSWI 713



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 5/223 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC      + V++ +   +  SWN IIAG  N G  ++A+  FSEMR +G   D  ++
Sbjct: 312 YARCGFLDSARRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISL 371

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-D 124
            S++ A        +G Q+H+ I K G+ +++ V N L+ MY  C  +     +F    +
Sbjct: 372 RSLLCAQTKPMALCQGMQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRN 431

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           + D VSWN++L  C  H    E ++LF+ M  +E +PD  T   +L  C     +  G Q
Sbjct: 432 KADSVSWNAILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQ 491

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
            + Y  +    LE         ++ +  + G L +A    +SM
Sbjct: 492 VHCYSWKTGLVLEQFIK---NGLIDMYAKCGSLRQARRIFDSM 531



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 130/276 (47%), Gaps = 8/276 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D + V+  +  RN +S+ ++I G+   G   +A+  + +M QA +  D F  
Sbjct: 109 YGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAF 168

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A         GKQ+HA + K+   S++  QN L+ MY     ++DA+KVF  +  
Sbjct: 169 GSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPA 228

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI-KPDGTTFLVVLSACCHAGFIDKGLQ 184
           +DL+SW+S++ G +  G+  EA+   ++M    +  P+   F   L AC      D G Q
Sbjct: 229 KDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQ 288

Query: 185 YFYLMRNDASLE-PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
              L      LE    A    ++  +  R GFL+ A    N + R P  + +  +++   
Sbjct: 289 IHGLC---IKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIER-PDTASWNVIIAGLA 344

Query: 244 VHG--NREIAVRSAKRVLDLWPNDPAIYVLLSNVSK 277
            +G  +  ++V S  R     P+  ++  LL   +K
Sbjct: 345 NNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTK 380



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 1/183 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-DID 61
           I  Y R +   D   V+  +  ++ ISW++IIAGF  LG   +AL    EM   G+   +
Sbjct: 207 IAMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPN 266

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +   S + A   +     G Q+H L  K+    N      L  MYA CG ++ A +VF+
Sbjct: 267 EYIFGSSLKACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFN 326

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            ++  D  SWN ++ G A++GY+ EAV +F +M+ +   PD  +   +L A      + +
Sbjct: 327 QIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQ 386

Query: 182 GLQ 184
           G+Q
Sbjct: 387 GMQ 389



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 3/169 (1%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFS-EMRQAGIDIDYFTITSIVGAIGVI 75
           +V S+++T   +  N  I   C      +AL+ F    + +   I   T  S++ A    
Sbjct: 20  SVVSTIKTEELM--NDHINSLCRNSFYREALEAFDFAQKNSSFKIRLRTYISLICACSSS 77

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               +G+++H  I       +  + N ++ MY  CG++ DA +VF  M ER+LVS+ S++
Sbjct: 78  RSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVI 137

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G + +G   EA+ L+ +M + ++ PD   F  ++ AC  AG +  G Q
Sbjct: 138 TGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQ 186


>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
          Length = 807

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 170/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        +++ +  R+ + WN++I+G       E+A     +MR+ G+     + 
Sbjct: 463 YSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSY 522

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++     +S   +G+QMHA + K GYD NV+V   L+ MYA  G ++DA   F+ M  
Sbjct: 523 ASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIV 582

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++LV+WN ++ G A +G+  +AV+LFE M  T+ KPD  TF+ VL+ C H+G +D+ + +
Sbjct: 583 KNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTF 642

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M ++  +  P  EHYT ++  L RA    E E+ I  M     P +++ LL+AC VH
Sbjct: 643 FNSMESNYGIT-PLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAACVVH 701

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   SAK +  L P +P+ YVLLSN+        DA  +R LM +RG+ K  GYSW
Sbjct: 702 HNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSW 761

Query: 306 V 306
           V
Sbjct: 762 V 762



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 87/152 (57%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN +SWN +IA     GS  +AL+ +  M Q G+    FT+ S++ A G ++   +G++ 
Sbjct: 105 RNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRC 164

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H L  K+G D + FV+N L+ MY  CG++ DA ++F  M   + VS+ +++ G A  G  
Sbjct: 165 HGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAV 224

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
            +A++LF +M +T I+ D      VL AC  A
Sbjct: 225 DDALRLFARMSRTGIRVDPVAVSSVLGACAQA 256



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 120/256 (46%), Gaps = 17/256 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D   ++  + + N++S+ A++ G    G+ + AL+ F+ M + GI +D   +
Sbjct: 187 YTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAV 246

Query: 66  TSIVGAIG--------VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
           +S++GA          V    +  + +HAL+ + G+ S+  V N LV +YA    +++A 
Sbjct: 247 SSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAI 306

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           KVF S+    +VSWN L+ G    G    A+++ E MQ++  +P+  T+  +L++C  A 
Sbjct: 307 KVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKAR 366

Query: 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR---NPGPSV 234
            +      F        +  P    +  ++   G+     E       M      P  + 
Sbjct: 367 DVPSARAMF------DKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTT 420

Query: 235 YKALLSACQVHGNREI 250
              +LS+C   GN E+
Sbjct: 421 LAVILSSCSRLGNFEL 436



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 102/198 (51%), Gaps = 2/198 (1%)

Query: 29  SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
           +WN +++G+      ++ +  F  M+   +  D  T+  I+ +   +  F+ GKQ+H+  
Sbjct: 385 TWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSAS 444

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
            ++   +++FV + L+ +Y+ CG +  A  +F+ M ERD+V WNS++ G A H  S EA 
Sbjct: 445 VRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAF 504

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208
              +QM++  + P  +++  +++ C     I +G Q    +  D   +        +++ 
Sbjct: 505 DFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVG--CSLID 562

Query: 209 LLGRAGFLNEAESFINSM 226
           +  ++G +++A  F N M
Sbjct: 563 MYAKSGNMDDARLFFNCM 580



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 35/167 (20%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+ S+ + + +SWN +I G+  LG  E+A++    M+++G + +  T ++++ +      
Sbjct: 308 VFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASC----- 362

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
                                ++ R          +  A  +F  + +  + +WN+LL G
Sbjct: 363 ---------------------IKAR---------DVPSARAMFDKIPKPSVTTWNTLLSG 392

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
                  +E + LF +MQ   ++PD TT  V+LS+C   G  + G Q
Sbjct: 393 YGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQ 439



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 86/224 (38%), Gaps = 63/224 (28%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS------------------- 122
           K  HA +   G  ++ F+ NRLV +Y++ G    A + F +                   
Sbjct: 30  KAAHARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACRA 89

Query: 123 ------------MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
                       M +R+ VSWN+++   A  G   EA+++++ M +  + P   T   VL
Sbjct: 90  GDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVL 149

Query: 171 SAC-----------CHA----------GFIDKGLQYFYL--------MRNDASLEPPRAE 201
           SAC           CH            F++ GL   Y         +R    +  P   
Sbjct: 150 SACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEV 209

Query: 202 HYTAIVGLLGRAGFLNEAESFINSMSRNP---GPSVYKALLSAC 242
            +TA++G L + G +++A      MSR      P    ++L AC
Sbjct: 210 SFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGAC 253


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 174/303 (57%), Gaps = 3/303 (0%)

Query: 6   YSRCDS-SLDFQNVYSSVRTRNQIS-WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           Y RC++  LD   V        QI+ WN +I G+   G   +AL+ +  ++   I +D  
Sbjct: 257 YGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKV 316

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T  S++ A    +   EGK +H+   + G DS+V V+N L  MY+ CG++ +A ++F SM
Sbjct: 317 TFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSM 376

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             R  VSWN +L   A HG S E ++L  +M++  +K +G TF+ VLS+C HAG I +G 
Sbjct: 377 PIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGC 436

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           QYF+ + +D  +E  + EHY  +V LLGRAG L EAE +I+ M   P    + +LL AC+
Sbjct: 437 QYFHSLGHDRGIE-VKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACR 495

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
           VH + +    +A+++L+L P + +  V+LSN+      W +A  +R  M +R ++K PG 
Sbjct: 496 VHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGI 555

Query: 304 SWV 306
           S +
Sbjct: 556 SSI 558



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 147/316 (46%), Gaps = 29/316 (9%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+RC S  +   V+  ++ +N I+W+AII  F + G   +AL+ F  M+Q GI  + 
Sbjct: 153 ITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNR 212

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC--GAINDANKVF 120
            T  S++      SG +E  ++H LI + G D    + N LV +Y  C  G ++ A  + 
Sbjct: 213 VTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVIL 272

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC------ 174
             MDE+ + +WN L+ G   HG SREA++ ++++Q   I  D  TF+ VL+AC       
Sbjct: 273 QEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLA 332

Query: 175 -----HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
                H+  ++ GL    +++N             A+  +  + G +  A    +SM   
Sbjct: 333 EGKMIHSNAVECGLDSDVIVKN-------------ALTNMYSKCGSMENARRIFDSMPIR 379

Query: 230 PGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGD 287
              S +  +L A   HG  E  ++  +++    +  N      +LS+ S A    +    
Sbjct: 380 SAVS-WNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQY 438

Query: 288 IRTLMYNRGIRKKPGY 303
             +L ++RGI  K  +
Sbjct: 439 FHSLGHDRGIEVKTEH 454



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 135/273 (49%), Gaps = 6/273 (2%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           TY++C S  D + V+  +  R+  +WN++I+ +       +A   F  M+  G   D  T
Sbjct: 54  TYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVT 113

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             SI+ A       + GK +   I +  ++ ++FV   L+ MYA C +  +A +VF  M 
Sbjct: 114 FLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMK 173

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++L++W++++   A HG+  EA++ F  MQ+  I P+  TF+ +L+       +++ L 
Sbjct: 174 QKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEE-LS 232

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGR--AGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             +L+  +  L+        A+V + GR   G L+ AE  +  M      + +  L++  
Sbjct: 233 RIHLLITEHGLDDT-TTMSNALVNVYGRCETGELDVAEVILQEMDEQQ-ITAWNVLINGY 290

Query: 243 QVHGNREIAVRSAKRV-LDLWPNDPAIYVLLSN 274
            +HG    A+ + +R+ L+  P D   ++ + N
Sbjct: 291 TLHGRSREALETYQRLQLEAIPVDKVTFISVLN 323



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 67/130 (51%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           M   G+  +  T  +++ ++      ++GK +H+ + +  +  +VFV   LV  Y  CG+
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           + DA KVF  M  R + +WNS++   +    S EA  +F++MQ    + D  TFL +L A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 173 CCHAGFIDKG 182
           C +   +  G
Sbjct: 121 CVNPENLQHG 130


>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Vitis vinifera]
          Length = 515

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 176/289 (60%), Gaps = 1/289 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  ++ +   SW AI++G+  +G    AL+ F  M+   I++D  ++ S++ A   +  
Sbjct: 179 IFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLGA 238

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + GK +H    K G+  ++ V N L+ +YA  G++++  ++F  M+ERD++SW+++++G
Sbjct: 239 LELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVG 298

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A+HG +REA++LF++MQK +++P+  TF+ +LSAC HAG +++GL YF  M  D ++EP
Sbjct: 299 LANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDNIEP 358

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
              EHY  +V LLG +G L++A   I  M   P   ++  L S+C+ HGN EI   + + 
Sbjct: 359 G-VEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLLSSSCRSHGNLEIVAIAMEH 417

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +L+L P+D   Y+ LSN+      WD    +R LM ++ + K PG S +
Sbjct: 418 LLELEPDDTGNYITLSNLYADLGKWDGVSRMRKLMSSKYMNKTPGCSSI 466



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 4/130 (3%)

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D FT   +V     +  +  GKQ+H   FK G  SN  ++N LV MY  C +++DA++VF
Sbjct: 90  DKFTFPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVF 149

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M ERD VSWN+L+ G    G  R A  +FE++Q   I     ++  ++S     G   
Sbjct: 150 EEMTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTI----FSWTAIVSGYARIGCHA 205

Query: 181 KGLQYFYLMR 190
             L++F  M+
Sbjct: 206 VALEFFRRMQ 215



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 96/238 (40%), Gaps = 45/238 (18%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++  S  + + ++  +  R+ ISW+ +I G  N G   +A++ F EM++A ++ + 
Sbjct: 265 IEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNI 324

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   ++ A             HA                        G +N+    F S
Sbjct: 325 ITFVGLLSACA-----------HA------------------------GLLNEGLGYFES 349

Query: 123 MDERDLVSWNSLLLGCAHH--GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           M+  D +       GC  +  G S    Q  E ++K  +KPD   + ++ S+C   G ++
Sbjct: 350 MERDDNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLLSSSCRSHGNLE 409

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGL---LGRAGFLNEAESFINS--MSRNPGPS 233
                   M +   LEP    +Y  +  L   LG+   ++     ++S  M++ PG S
Sbjct: 410 ---IVAIAMEHLLELEPDDTGNYITLSNLYADLGKWDGVSRMRKLMSSKYMNKTPGCS 464


>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
          Length = 691

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 106/274 (38%), Positives = 165/274 (60%), Gaps = 1/274 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C+       ++SS+R  N++SWN I+ GF   G GE+AL  F EM+ A +     T 
Sbjct: 409 YAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTY 468

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A    +  +   Q+H  I K  ++++  + N L+  YA CG I DA KVF  + E
Sbjct: 469 SSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLME 528

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD++SWN+++ G A HG + +A++LF++M K+ ++ +  TF+ +LS C   G ++ GL  
Sbjct: 529 RDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSL 588

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  MR D  ++P   EHYT IV LLGRAG LN+A  FI  +   P   V++ALLS+C +H
Sbjct: 589 FDSMRIDHGIKPS-MEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIH 647

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKAT 279
            N  +   SA+++L++ P D   YVLLSN+  A 
Sbjct: 648 KNVALGRFSAEKILEIEPQDETTYVLLSNMYAAA 681



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 136/277 (49%), Gaps = 19/277 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D +  +  +   + I  + +I+ +      EQA + F  + ++ +  + +++
Sbjct: 308 YAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSL 367

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   +     GKQ+H    KIG++S++FV N L+  YA C  ++ + K+FSS+ +
Sbjct: 368 SSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRD 427

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC------HAGFI 179
            + VSWN++++G +  G   EA+ +F +MQ  ++     T+  VL AC       HAG I
Sbjct: 428 ANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQI 487

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKAL 238
              ++      ND  +         +++    + G++ +A + F + M R+     + A+
Sbjct: 488 HCSIEK-STFNNDTVIG-------NSLIDTYAKCGYIRDALKVFQHLMERD--IISWNAI 537

Query: 239 LSACQVHGNREIAVRSAKRV--LDLWPNDPAIYVLLS 273
           +S   +HG    A+    R+   ++  ND     LLS
Sbjct: 538 ISGYALHGQAADALELFDRMNKSNVESNDITFVALLS 574



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 89/182 (48%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS C    D ++V++ +  ++ + W A+++ +      E A + FS+MR +G   + 
Sbjct: 204 IDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNP 263

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F +TS++ A   +     GK +H    K   D+   V   L+ MYA CG I DA   F  
Sbjct: 264 FALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEM 323

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +   D++  + ++   A    + +A +LF ++ ++ + P+  +   VL AC +   +D G
Sbjct: 324 IPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFG 383

Query: 183 LQ 184
            Q
Sbjct: 384 KQ 385



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 84/171 (49%), Gaps = 2/171 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN +S+  ++      G  E A   F  +R  G +++ F +T+++     +
Sbjct: 116 RRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAM 175

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                   +H+  +K+G+D N FV + L+  Y++C  ++DA  VF+ +  +D V W +++
Sbjct: 176 DAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMV 235

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA--CCHAGFIDKGLQ 184
              + +     A ++F +M+ +  KP+      VL A  C  +  + KG+ 
Sbjct: 236 SCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIH 286



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 10/174 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---D 59
           I TY++C    D   V+  +  R+ ISWNAII+G+   G    AL+ F  M ++ +   D
Sbjct: 507 IDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESND 566

Query: 60  IDYFTITSIVGAIGVIS-GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           I +  + S+  + G+++ G      M       G   ++     +V +    G +NDA +
Sbjct: 567 ITFVALLSVCSSTGLVNHGLSLFDSMR---IDHGIKPSMEHYTCIVRLLGRAGRLNDALQ 623

Query: 119 VFSSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
               +      + W +LL  C  H     A+  F   +  EI+P   T  V+LS
Sbjct: 624 FIGDIPSAPSAMVWRALLSSCIIH--KNVALGRFSAEKILEIEPQDETTYVLLS 675


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 106/289 (36%), Positives = 166/289 (57%), Gaps = 2/289 (0%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-DIDYFTITSIVGAIGVISG 77
           + ++  RN +SWNA++AG+      + AL+ F  M +  I   +  T++S++     +S 
Sbjct: 194 FGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSA 253

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G+Q+H    K+    NV V   L+ MY  CG +NDA KVF  M  +D+V+WN+++ G
Sbjct: 254 LGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISG 313

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG   +A++LFE+M+   + PD  T L VL+AC H G  D G+Q F  M+    +E 
Sbjct: 314 YAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIE- 372

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P+ +HY+ +V LL RAG L  A + I+SM   P PS Y  LL+AC+V+ N E A  +A++
Sbjct: 373 PQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARK 432

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++  P +   YV L+N+    + W D   +R  M +  + K PGYSW+
Sbjct: 433 LIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWM 481



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 115/251 (45%), Gaps = 21/251 (8%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDIDYFTITSIVGAIG 73
           + V+S++  ++  SWN +++G    G+ E+A   F  M  R A   + +  + + +   G
Sbjct: 97  RRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNA---VSWNAMVAALACSG 153

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +   ++      L       ++  +   +V  Y   G +  A + F +M  R+LVSWN+
Sbjct: 154 DMGAAED------LFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNA 207

Query: 134 LLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           ++ G   +  + +A+++F+ M + + ++P+ +T   VL  C +   +  G Q      + 
Sbjct: 208 VVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQV-----HQ 262

Query: 193 ASLEPPRAEHYTAIVGLLG---RAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNRE 249
             ++ P + + T    LL    + G LN+A    + MS       + A++S    HG   
Sbjct: 263 WCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMS-TKDIVAWNAMISGYAQHGGGM 321

Query: 250 IAVRSAKRVLD 260
            A++  +++ D
Sbjct: 322 QAIKLFEKMKD 332



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 40/66 (60%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D   V+  + T++ ++WNA+I+G+   G G QA+K F +M+  G+  D+ T+
Sbjct: 283 YCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITL 342

Query: 66  TSIVGA 71
            +++ A
Sbjct: 343 LAVLTA 348



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
           N L+  +  CG I+ A +VFS+M  +D+ SWN+++ G + +G S EA  +F  M
Sbjct: 81  NTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIM 134


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 178/305 (58%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C   ++ + V+  +R R+ ++WN++I+G+   G  ++A+  F  M++ G++ D 
Sbjct: 153 VALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDS 212

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S++ A   +  F  G  +H  I   G D NV +   L+ MY  CG ++ A +VF S
Sbjct: 213 ATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDS 272

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER++V+W +++ G   +GY  +AV+LF +M++  + P+  TF+ VLSAC HAG +++G
Sbjct: 273 MKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEG 332

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN-SMSRNPGPSVYKALLSA 241
            + F  +R +  L P   EH   +V +LGRAG L+EA +FI   +  NP P++  A+L A
Sbjct: 333 RRLFASIREEYHLVPG-VEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAMLGA 391

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++H N ++  + A+ +L   P +PA YV+LSN+       D    +R  M  + ++K+ 
Sbjct: 392 CKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRKCLKKQV 451

Query: 302 GYSWV 306
           GYS V
Sbjct: 452 GYSTV 456



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 126/236 (53%), Gaps = 7/236 (2%)

Query: 46  ALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105
           +L  +S M  + +    +T TS++ +   +S  K G+ +H  +   G+  +V+VQ  LV 
Sbjct: 95  SLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVA 154

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
           +Y  CG + +A KVF  + ER +V+WNS++ G   +G+++EA+ LF++M++T ++PD  T
Sbjct: 155 LYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSAT 214

Query: 166 FLVVLSACCHAGFIDKGL-QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
           F+ VLSAC H G    G   + Y++ N   L        T+++ +  R G +++A    +
Sbjct: 215 FVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLG---TSLINMYIRCGNVSKAREVFD 271

Query: 225 SMSRNPGPSVYKALLS--ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
           SM +      + A++S      +G++ + +    R   L+PN      +LS  + A
Sbjct: 272 SM-KERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHA 326


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 174/305 (57%), Gaps = 3/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y++         ++  +  ++ ++W A++ G+   G  ++AL+ F +M+  G++ D 
Sbjct: 216 IVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDE 275

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGY--DSNVFVQNRLVFMYAICGAINDANKVF 120
            T+  ++ A   +   K    +  +  + G+    NV V + L+ MY+ CG+ ++A KVF
Sbjct: 276 VTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVF 335

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M ER++ S++S++LG A HG +  A+QLF  M KTEI+P+  TF+ +LSAC HAG ++
Sbjct: 336 EVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVE 395

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +G Q F  M     +  P  +HY  +V LLGRAG L EA   + +M   P   V+ ALL 
Sbjct: 396 QGRQLFAKMEKFFGV-APSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLG 454

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           AC++HGN +IA  +A  +  L PN    Y+LLSN+  +   W++   +R ++  +G +K 
Sbjct: 455 ACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKN 514

Query: 301 PGYSW 305
           PG SW
Sbjct: 515 PGCSW 519



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 127/296 (42%), Gaps = 37/296 (12%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  V   N   W A+I G+   G   ++   ++ MR+ G+    FT +++  A G    
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 78  FKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN---- 132
              GKQ+HA    IG + S+++V N ++ +Y  CG +  A KVF  M ERD+VSW     
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 133 ---------------------------SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
                                      +++ G A +G  +EA++ F++MQ   ++ D  T
Sbjct: 218 AYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277

Query: 166 FLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP-RAEHYTAIVGLLGRAGFLNEAESFIN 224
              V+SAC   G + K   +   +   +   P       +A++ +  + G  +EA     
Sbjct: 278 LAGVISACAQLGAV-KHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFE 336

Query: 225 SMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKA 278
            M      S Y +++    +HG    A++    +L  ++ PN      +LS  S A
Sbjct: 337 VMKERNVFS-YSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHA 391


>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
          Length = 563

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 106/296 (35%), Positives = 178/296 (60%), Gaps = 4/296 (1%)

Query: 14  DFQN---VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVG 70
           D QN   ++  +R ++ ISWNAII+G+ + G GE+A K +  M + GI  D  T+ +++ 
Sbjct: 218 DLQNARRLFDGIRAKDVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLT 277

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
           A   ++  ++G+  HA++ K   +S++ + N L+ MY+ CG ++++  VF S+  +D+VS
Sbjct: 278 ACSSLALLRQGRSTHAVVIKAMLESSISICNALMTMYSKCGNVDESELVFMSLKSQDIVS 337

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
           WN+++   A HG  ++ + LF +M+   + P+  TFL +LSAC HAG +D+ L+ F LM 
Sbjct: 338 WNTIIAAYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLMF 397

Query: 191 NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREI 250
           +  ++  PRAEHY  IV +L RAG L +A S+I  M      +V+  LL A Q HGN ++
Sbjct: 398 SKYAIS-PRAEHYACIVDILSRAGQLEKACSYIKEMPSEAEKNVWGTLLCASQTHGNVQL 456

Query: 251 AVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
              +AK ++         YV+LSN+  A   W +   +R+ M  +G++K+PG+SW 
Sbjct: 457 GELAAKMLVLSDFESSGAYVMLSNIYAAAGMWGEVNRVRSQMKEKGVKKQPGHSWT 512



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 135/297 (45%), Gaps = 31/297 (10%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT------------------ 66
           RN  SWNA++AG   LGS E A   F +M +  + + Y T+                   
Sbjct: 108 RNVASWNAMLAGLVRLGSMEDARSLFDQMPERNV-VSYTTMVDGLARCGEVASARELFDA 166

Query: 67  ----SIVGAIGVISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
               ++V    +ISG+ +   +     +F+   + NV     ++  Y   G + +A ++F
Sbjct: 167 MPTRNLVSWAAMISGYVDNNMLEEARKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLF 226

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             +  +D++SWN+++ G  H+G   EA +L+  M +  IKPD  T + +L+AC     + 
Sbjct: 227 DGIRAKDVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTACSSLALLR 286

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +G +  + +   A LE        A++ +  + G ++E+E    S+      S +  +++
Sbjct: 287 QG-RSTHAVVIKAMLESS-ISICNALMTMYSKCGNVDESELVFMSLKSQDIVS-WNTIIA 343

Query: 241 ACQVHG--NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295
           A   HG   + IA+     +  L PND     +LS    A    D++  +  LM+++
Sbjct: 344 AYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLSACGHAGRV-DESLKLFDLMFSK 399



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 6/159 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C +  + + V+ S+++++ +SWN IIA +   G  ++ +  F EM   G+  +  T 
Sbjct: 314 YSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLIPNDITF 373

Query: 66  TSIVGAIGVISGFKEGKQMHALIF-KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM- 123
            S++ A G      E  ++  L+F K            +V + +  G +  A      M 
Sbjct: 374 LSMLSACGHAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRAGQLEKACSYIKEMP 433

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
            E +   W +LL     HG     VQL E   K  +  D
Sbjct: 434 SEAEKNVWGTLLCASQTHGN----VQLGELAAKMLVLSD 468



 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 102/269 (37%), Gaps = 39/269 (14%)

Query: 2   QILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKC-FSEMRQAGIDI 60
           +I   +R       + V+ ++  R+ +SWNA++      G    A +  F +M    + I
Sbjct: 22  RITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMPSRNV-I 80

Query: 61  DYFTITSIVGAIG----------------------VISGFKEGKQMHAL--IFKIGYDSN 96
            + +I +   A G                      +++G      M     +F    + N
Sbjct: 81  SWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDARSLFDQMPERN 140

Query: 97  VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
           V     +V   A CG +  A ++F +M  R+LVSW +++ G   +    EA +LFE M +
Sbjct: 141 VVSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMISGYVDNNMLEEARKLFEAMPE 200

Query: 157 TEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFL 216
             +         +++  C  G +    + F  +R    +       + AI+      G  
Sbjct: 201 KNV----VACTAMITGYCKEGDLQNARRLFDGIRAKDVIS------WNAIISGYVHNGLG 250

Query: 217 NEAESFINSMSR---NPGPSVYKALLSAC 242
            EA      M R    P  +   ALL+AC
Sbjct: 251 EEATKLYIIMLREGIKPDQATLIALLTAC 279


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C+   + + ++ S+  ++ +SW+++I+G+      ++ L  F EM+ +G   D  T+
Sbjct: 317 YLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTL 376

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   ++  ++GK +HA I + G   NV +   L+ MY  CG +  A +VF  M E
Sbjct: 377 VSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIE 436

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           + + +WN+L+LG A +G    ++ +F  M+K  + P+  TF+ VL AC H G +D+G  +
Sbjct: 437 KGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHH 496

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           FY M +D  ++ P  +HY  +V LLGRAG L EAE  +N M   P  + + ALL AC+ H
Sbjct: 497 FYSMIHDHKIQ-PNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKH 555

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E+  R  +++++L P+    +VLLSN+  +   WDD  +IR +M    + K PG S 
Sbjct: 556 GDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSM 615

Query: 306 V 306
           +
Sbjct: 616 I 616



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 124/262 (47%), Gaps = 38/262 (14%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  ++ ++W+A+IA F      E+A++ F  M + G+ +D     S + A   +  
Sbjct: 197 LFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLV 256

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              GK +H+L  KIG +S + +QN L++MY+ CG I  A K+F      DL+SWNS++ G
Sbjct: 257 VNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISG 316

Query: 138 CAH--------------------------HGYSR-----EAVQLFEQMQKTEIKPDGTTF 166
                                         GY++     E + LF++MQ +  KPD TT 
Sbjct: 317 YLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTL 376

Query: 167 LVVLSACCHAGFIDKG-LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFIN 224
           + V+SAC     +++G   + Y+ RN  ++        T ++ +  + G +  A E F  
Sbjct: 377 VSVISACARLAALEQGKWVHAYIKRNGLTINVILG---TTLIDMYMKCGCVETALEVFYG 433

Query: 225 SMSRNPGPSVYKALLSACQVHG 246
            + +  G S + AL+    ++G
Sbjct: 434 MIEK--GISTWNALILGLAMNG 453



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 72/144 (50%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + +++ +   N   WN +I  +    S   A   +  M    +  D +T   ++ A  + 
Sbjct: 32  RRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIR 91

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               E KQ+H  + K+G+DS+V+V+N L+  +++C  + DA +VF+     D VSWNS+L
Sbjct: 92  RSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSIL 151

Query: 136 LGCAHHGYSREAVQLFEQMQKTEI 159
            G    G   EA  ++ QM +  I
Sbjct: 152 AGYIEIGNVEEAKHIYHQMPERSI 175



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 39/177 (22%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           +S C +  D   V++     + +SWN+I+AG+  +G+ E+A   + +M +  I       
Sbjct: 123 FSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSI------- 175

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
                                              N ++ ++ + G + +A K+F  M E
Sbjct: 176 --------------------------------IASNSMIVLFGMRGLVVEACKLFDEMLE 203

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +D+V+W++L+     +    EA++ F  M K  +  D    +  LSAC +   ++ G
Sbjct: 204 KDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG 260


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 173/303 (57%), Gaps = 3/303 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        ++  ++ ++ ISWN +I G+  +   ++AL  F EM + G   +  T+
Sbjct: 255 YSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTM 314

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKI--GYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            SI+ A   +     G+ +H  I K   G  +N  +Q  L+ MYA CG I  AN+VF ++
Sbjct: 315 LSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTI 374

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             + L S N+++ G A HG +  A  L  +M+K  I+PD  TF+ +LSAC HAG  D G 
Sbjct: 375 LNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGR 434

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           + F  M  D  +EP + EHY  ++ LLGR+G   EAE  INSM+  P   ++ +LL AC+
Sbjct: 435 KIFKSMTLDYRIEP-KLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACK 493

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
           +H N E+    A++++ + P +P  YVLLSN+   +  WDD   +RTL+ ++G++K PG 
Sbjct: 494 IHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGC 553

Query: 304 SWV 306
           S +
Sbjct: 554 SSI 556



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 134/265 (50%), Gaps = 3/265 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++  +  ++ +SWNA+I+G+  +G  ++AL+ F+EM +  +  D  T+ +++      
Sbjct: 164 QKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHS 223

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G+Q+H+ I   G+ SN+ + N L+ +Y+ CG +  A+ +F  +  +D++SWN+L+
Sbjct: 224 GNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLI 283

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A+  + +EA+ +F++M K    P+  T L +L AC H G ID G      +      
Sbjct: 284 GGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKG 343

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
                   T+++ +  + G +  A    +++  N   S   A++    +HG  + A    
Sbjct: 344 IITNTSLQTSLIDMYAKCGNIEAANQVFDTI-LNKSLSSCNAMIFGFAMHGRADAAFDLL 402

Query: 256 KRVLD--LWPNDPAIYVLLSNVSKA 278
            R+    + P+D     LLS  S A
Sbjct: 403 SRMKKDGIEPDDITFVGLLSACSHA 427



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 31/199 (15%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +V+ S++  NQ+SWN +I G         AL  +  M   G+  + +T   +  +     
Sbjct: 33  SVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSK 92

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS-------------- 122
             +EGKQ+HA I K G   ++ V   L+ MYA  G + DA+KVF +              
Sbjct: 93  AAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMIT 152

Query: 123 -------MDE----------RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
                  MD+          +D+VSWN+++ G A  G  +EA++LF +M K ++KPD +T
Sbjct: 153 GYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDEST 212

Query: 166 FLVVLSACCHAGFIDKGLQ 184
              VLS C H+G ++ G Q
Sbjct: 213 MATVLSTCTHSGNVELGRQ 231


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 171/306 (55%), Gaps = 3/306 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C   +  + ++  + +R+ I+WNA I+ +   G  ++A+  F  M++ G+D + 
Sbjct: 261 ISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNK 320

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+T+++ A   I     GKQM       G   ++FV   L+ MYA CG++  A +VF+ 
Sbjct: 321 VTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFND 380

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFID 180
           M  ++  SWN+++   A HG ++EA+ LFE+M  +    +P+  TF+ +LSAC HAG +D
Sbjct: 381 MPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVD 440

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +G + F +M     L  P+ EHY+ +V LL RAG L EA   I  M   P      AL S
Sbjct: 441 EGYRLFDMMSTLFGL-VPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHS 499

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           ACQ   N +I  R  + +L+L P++   Y++ S + +  + WDDA  +R LM   G+ K 
Sbjct: 500 ACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVTKT 559

Query: 301 PGYSWV 306
           PG SW+
Sbjct: 560 PGCSWI 565



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 143/278 (51%), Gaps = 12/278 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDID 61
           +  Y RC  +   + V+  +  ++ +SWN++++G+  LG   +A++ F  +R+ +G + D
Sbjct: 159 VTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPD 218

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             ++ S++GA G +   + G+ +   + + G   N ++ + L+ MY+ CG +  + ++F 
Sbjct: 219 EMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFD 278

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M  RD ++WN+ +   A +G + EA+ LF  M++  + P+  T   VLSAC   G +D 
Sbjct: 279 GMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDL 338

Query: 182 GLQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           G Q    M   A+    + + +  TA++ +  + G L  A+   N M R    S + A++
Sbjct: 339 GKQ----MDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDAS-WNAMI 393

Query: 240 SACQVHGNREIAVRSAKRVLD----LWPNDPAIYVLLS 273
           SA   HG  + A+   +R+ D      PND     LLS
Sbjct: 394 SALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLS 431



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 1/138 (0%)

Query: 46  ALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105
            L  + +M+   I  + FT   +  A   +   +  +  H  +FK+G D++    N +V 
Sbjct: 101 TLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVT 160

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGT 164
           MY  CG    A KVF  + E+DLVSWNSLL G A  G++REAV++F ++ +++  +PD  
Sbjct: 161 MYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEM 220

Query: 165 TFLVVLSACCHAGFIDKG 182
           + + VL AC   G ++ G
Sbjct: 221 SLVSVLGACGELGDLELG 238


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 105/281 (37%), Positives = 167/281 (59%), Gaps = 1/281 (0%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N +SW ++IA     G   +AL+ F EM+ AG+  +  TI  ++ A G I+    GK  H
Sbjct: 350 NVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAH 409

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
               + G  ++V+V + L+ MYA CG I  +   F  +  ++LV WN+++ G A HG ++
Sbjct: 410 CFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAK 469

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205
           EA+++F+ MQ++  KPD  +F  VLSAC  +G  ++G  YF  M +   +E  R EHY  
Sbjct: 470 EAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIE-ARVEHYAC 528

Query: 206 IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265
           +V LL RAG L +A + I  M  NP   V+ ALLS+C+VH N  +   +A+++ +L P++
Sbjct: 529 MVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSN 588

Query: 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           P  Y+LLSN+  +   W++   +R +M N+G+RK PG SW+
Sbjct: 589 PGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWI 629



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 88/173 (50%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V   V   N  S++ +I  F        AL  FS+M   G+  D   + S V A   +S 
Sbjct: 70  VLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSA 129

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K  +Q+H +    G+DS+ FVQ+ LV MY  C  I DA++VF  M E D+VSW++L+  
Sbjct: 130 LKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAA 189

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
            A  G   EA +LF +M  + ++P+  ++  +++   H+G   + +  F  M 
Sbjct: 190 YARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMH 242



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 35/183 (19%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N ISWN +IAGF + G   +A+  F +M   G + D  TI+S++ A+G +     G  +H
Sbjct: 214 NLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIH 273

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD------------------ 127
             + K G  S+  V + L+ MY  C   ++ ++VF  MD  D                  
Sbjct: 274 GYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVE 333

Query: 128 -----------------LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
                            +VSW S++  C+ +G   EA++LF +MQ   +KP+  T   +L
Sbjct: 334 SSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLL 393

Query: 171 SAC 173
            AC
Sbjct: 394 PAC 396



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 2/138 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      +  +  + T+N + WNA+IAG+   G  ++A++ F  M+++G   D  + 
Sbjct: 431 YAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISF 490

Query: 66  TSIVGAIGVISGFKEGK-QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           T ++ A       +EG    +++  K G ++ V     +V + +  G +  A  +   M 
Sbjct: 491 TCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMP 550

Query: 125 -ERDLVSWNSLLLGCAHH 141
              D   W +LL  C  H
Sbjct: 551 VNPDACVWGALLSSCRVH 568



 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 39/224 (17%)

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +   + +Q HA I K G  ++  +  +L+  YA      DA  V   + E ++ S+++L+
Sbjct: 27  ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLI 86

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
              +       A+  F QM    + PD       + AC  AG               ++L
Sbjct: 87  YAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKAC--AGL--------------SAL 130

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           +P R  H     G+   +GF  +++SF+ S       S+    +   Q        +R A
Sbjct: 131 KPARQVH-----GIASVSGF--DSDSFVQS-------SLVHMYIKCNQ--------IRDA 168

Query: 256 KRVLD-LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
            RV D ++  D   +  L        C D+A  + + M + G++
Sbjct: 169 HRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQ 212


>gi|356561520|ref|XP_003549029.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
           mitochondrial-like [Glycine max]
          Length = 506

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 110/296 (37%), Positives = 166/296 (56%), Gaps = 7/296 (2%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   V+  +  RN +SWNA++ G    G  E+A+  F  M + G   +  T   ++ A  
Sbjct: 165 DALRVFHEMPERNVVSWNAMVGGCSQTGHNEEAVNFFIGMLREGFIPNESTFPCVICAAA 224

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            I+    GK  HA   K     + FV N L+  YA CG++ D+  +F  + +R++VSWN+
Sbjct: 225 NIASLGIGKSFHACAIKFLGKVDQFVGNSLISFYAKCGSMEDSLLMFDKLFKRNIVSWNA 284

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G A +G   EA+  FE+M     KP+  T L +L AC HAG +D+G  YF    N A
Sbjct: 285 MICGYAQNGRGAEAISFFERMCSEGYKPNYVTLLGLLWACNHAGLVDEGYSYF----NRA 340

Query: 194 SLEPP---RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREI 250
            LE P   ++EHY  +V LL R+G   EAE F+ S+  +PG   +KALL+ CQ+H N  +
Sbjct: 341 RLESPGLLKSEHYACMVNLLARSGRFAEAEDFLQSVPFDPGLGFWKALLAGCQIHSNMRL 400

Query: 251 AVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
              +A+++LDL P+D + YV+LSN   A   W D   +RT M  +G+++ PG SW+
Sbjct: 401 GELAARKILDLDPDDVSSYVMLSNAHSAAGKWSDVATVRTEMKEKGMKRIPGSSWI 456



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 31/175 (17%)

Query: 29  SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
           S   +I GF      E A+  FS+M  + I  + FT  +++ +   +     GKQ+HA  
Sbjct: 48  SATTMIQGFVKRHCHEDAIYLFSKMLASKIRPNEFTFGTLINSSAALGNVVVGKQLHACA 107

Query: 89  FKIGYDSNVFVQNRLVFMY--------------------------AICGAIN-----DAN 117
            KIG   +VFV + L+ +Y                           ICG +      DA 
Sbjct: 108 MKIGLSCHVFVGSSLLDLYFKQSTIEDAQKAFGDTQHPNVVSYTTLICGYLKRGRFEDAL 167

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           +VF  M ER++VSWN+++ GC+  G++ EAV  F  M +    P+ +TF  V+ A
Sbjct: 168 RVFHEMPERNVVSWNAMVGGCSQTGHNEEAVNFFIGMLREGFIPNESTFPCVICA 222



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 10/171 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D   ++  +  RN +SWNA+I G+   G G +A+  F  M   G   +Y T+
Sbjct: 258 YAKCGSMEDSLLMFDKLFKRNIVSWNAMICGYAQNGRGAEAISFFERMCSEGYKPNYVTL 317

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR----LVFMYAICGAINDANKVFS 121
             ++ A        EG   ++   +   +S   +++     +V + A  G   +A     
Sbjct: 318 LGLLWACNHAGLVDEG---YSYFNRARLESPGLLKSEHYACMVNLLARSGRFAEAEDFLQ 374

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           S+  +  L  W +LL GC  H   R  +      +  ++ PD  +  V+LS
Sbjct: 375 SVPFDPGLGFWKALLAGCQIHSNMR--LGELAARKILDLDPDDVSSYVMLS 423


>gi|242077664|ref|XP_002448768.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
 gi|241939951|gb|EES13096.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
          Length = 598

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 175/305 (57%), Gaps = 4/305 (1%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           +++   S+C +  D    ++ +R ++ +SW  + AG  + G   +A+   S+M   G+  
Sbjct: 286 VEMYMKSKCLA--DGTMAFAEIRCKDVVSWTGMAAGCLHCGEPSKAIGILSQMMLDGVMP 343

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           + +T  +   A   ++   EG+++H  + K+G DS++ V N L+ MYA CG++  A+KVF
Sbjct: 344 NSYTFATSANACASLTDLDEGRKVHGYVIKLGDDSDIGVNNALIDMYAKCGSVACAHKVF 403

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            SM +R ++SW ++++G AH+G ++EAV++F+ M    + P+  T + +L AC   GF+D
Sbjct: 404 QSMQQRPVISWTAMIMGFAHNGRAQEAVEVFDDMLLKGVAPNRVTMICILYACSQGGFVD 463

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +G  YF  M +   ++P   +HY  +V LLG+AG + EAE  I+ M   PG  V++ALL 
Sbjct: 464 EGWIYFNAMEDKFGIQPGE-DHYACMVDLLGKAGHIEEAEELISRMPFPPGVLVWQALLG 522

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           AC  HGN  +  R+A+  L L  +DP+ Y+LL N       WD A   R LM    I K 
Sbjct: 523 ACHRHGNEAVGRRAAEHALALENDDPSTYMLLCNTLAGQHDWDGARRARGLM-GAEILKL 581

Query: 301 PGYSW 305
           PG SW
Sbjct: 582 PGSSW 586



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 95/183 (51%), Gaps = 2/183 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ Y +C        V   +  RN +SW+A IAG    G    AL  F  MR AG   + 
Sbjct: 84  LIAYFKCRLHRRGLRVLDEMPHRNAVSWSAAIAGLAQGGRPRDALALFIRMRLAGCPPNE 143

Query: 63  FTITSIVGAIG-VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           F + S + A     +G    +Q++AL  ++G+DS+VF+ N  +   A  G + DA ++F+
Sbjct: 144 FALASALNASSFAPAGTGCARQLYALSVRLGFDSSVFLTNAFLAAMARHGQLEDAVRLFN 203

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
               RD+VSWN+LL G A H +S +   L+ +M +  ++ DG +F  VLS    +  +  
Sbjct: 204 GSSVRDIVSWNTLLAGFARH-WSVQGWILWRRMVREAVRADGFSFSTVLSGLAASTSLAS 262

Query: 182 GLQ 184
           GLQ
Sbjct: 263 GLQ 265



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 9/220 (4%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   +++    R+ +SWN ++AGF    S  Q    +  M +  +  D F+ ++++  + 
Sbjct: 197 DAVRLFNGSSVRDIVSWNTLLAGFARHWS-VQGWILWRRMVREAVRADGFSFSTVLSGLA 255

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
             +    G Q+HA + K G+  +V+V N LV MY     + D    F+ +  +D+VSW  
Sbjct: 256 ASTSLASGLQVHAQLVKSGFGDDVYVGNSLVEMYMKSKCLADGTMAFAEIRCKDVVSWTG 315

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ---YFYLMR 190
           +  GC H G   +A+ +  QM    + P+  TF    +AC     +D+G +   Y   + 
Sbjct: 316 MAAGCLHCGEPSKAIGILSQMMLDGVMPNSYTFATSANACASLTDLDEGRKVHGYVIKLG 375

Query: 191 NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNP 230
           +D+ +         A++ +  + G +  A     SM + P
Sbjct: 376 DDSDIGV-----NNALIDMYAKCGSVACAHKVFQSMQQRP 410



 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           +VF+ N L+  Y  C       +V   M  R+ VSW++ + G A  G  R+A+ LF +M+
Sbjct: 76  HVFLHNHLLIAYFKCRLHRRGLRVLDEMPHRNAVSWSAAIAGLAQGGRPRDALALFIRMR 135

Query: 156 KTEIKPDGTTFLVVLSA 172
                P+       L+A
Sbjct: 136 LAGCPPNEFALASALNA 152


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 176/305 (57%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           I  YS+  +    +  +  + TRN I+WNA++  +   G+ E  LK +S+M  +  +  D
Sbjct: 465 ITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPD 524

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           + T  ++      I   K G Q+     K+G   +  V N ++ MY+ CG I++A K F 
Sbjct: 525 WVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFD 584

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            +  +DLVSWN+++ G + HG  ++A+++F+ +     KPD  +++ VLS C H+G +++
Sbjct: 585 FLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEE 644

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G  YF +M+ D ++ P   EH++ +V LLGRAG L EA++ I+ M   P   V+ ALLSA
Sbjct: 645 GKFYFDMMKRDHNISPG-LEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSA 703

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+ HGN ++A  +AK + DL       Y+LL+ +       DD+  +R LM ++GI+K P
Sbjct: 704 CKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSP 763

Query: 302 GYSWV 306
           GYSW+
Sbjct: 764 GYSWM 768



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 4/203 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    + + V+SS+R RN +SW  +I GF   G   ++++ F++MR   + +D F +
Sbjct: 336 YAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFAL 395

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++           G Q+H+L  K G+   V V N L+ MYA CG + +A  +F+ M E
Sbjct: 396 ATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAE 455

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSW  ++   +  G   +A + F+ M    +     T+  +L A    G  + GL+ 
Sbjct: 456 RDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNV----ITWNAMLGAYIQHGAEEDGLKM 511

Query: 186 FYLMRNDASLEPPRAEHYTAIVG 208
           +  M  +  + P    + T   G
Sbjct: 512 YSDMLTEKDVIPDWVTYVTLFRG 534



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 119/278 (42%), Gaps = 30/278 (10%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++ S+  R+ +SWN +I+     G   +AL    +M   G+  D  T TS + A   +S
Sbjct: 246 EIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLS 305

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             + GKQ+H  + +     + +V + +V +YA CG   +A +VFSS+ +R+ VSW  L+ 
Sbjct: 306 SLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIG 365

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G   +G   E+V+LF QM+   +  D      ++S CC+   I  G Q   L        
Sbjct: 366 GFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTR 425

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
                +  +++ +  + G L  AE   N M                            A+
Sbjct: 426 AVVVSN--SLISMYAKCGNLQNAELIFNFM----------------------------AE 455

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294
           R +  W      Y  + N++KA + +DD      + +N
Sbjct: 456 RDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWN 493



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 115/254 (45%), Gaps = 36/254 (14%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFT 64
           Y++  S  D   ++  + TR+  SWN I++G+   G    AL  F  MRQ G  + + FT
Sbjct: 102 YAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFT 161

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK------ 118
              ++ + G +   +   Q+  L+ K     +  VQ  LV M   CGA++ A+K      
Sbjct: 162 FGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIK 221

Query: 119 -------------------------VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                                    +F SM ERD+VSWN ++   +  G  REA+ +   
Sbjct: 222 NPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVD 281

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGR 212
           M    ++PD TT+   L+AC     ++ G Q +  ++RN   ++P  A   +A+V L  +
Sbjct: 282 MHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVA---SAMVELYAK 338

Query: 213 AGFLNEAESFINSM 226
            G   EA+   +S+
Sbjct: 339 CGCFKEAKRVFSSL 352



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 112/264 (42%), Gaps = 49/264 (18%)

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN--------------- 117
           G  S     + +H+ +  +G  S VF+QN L+  Y  CGA++DA                
Sbjct: 36  GARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPNVITH 95

Query: 118 -----------------KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT-EI 159
                            ++F  M  RD+ SWN+++ G    G    A+ +F  M++T + 
Sbjct: 96  NIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDS 155

Query: 160 KPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
            P+  TF  V+ +C   G+ +  LQ   L+    S + P  +  TA+V +L R G ++ A
Sbjct: 156 LPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQ--TALVDMLVRCGAMDFA 213

Query: 220 ESFINSMSRNPGPSVY---KALLSACQVHGNREIAVRSAKRVLDLWPNDPAIY--VLLSN 274
                  SR   P++      L+   + HG     V  A  +    P    +   +++S 
Sbjct: 214 S---KQFSRIKNPTIICRNSMLVGYAKSHG-----VDHALEIFKSMPERDVVSWNMVISA 265

Query: 275 VSKATDCWDDAGDIRTLMYNRGIR 298
           +SK+     +A D+   M+ +G+R
Sbjct: 266 LSKSGRV-REALDMVVDMHGKGVR 288


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 179/308 (58%), Gaps = 8/308 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRT---RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID 59
           +  Y+RC    D ++ Y   R    +++I+WN++++G  +LG  E+AL  F E+   G++
Sbjct: 358 VTMYARCK---DIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELLLFGVE 414

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANK 118
            DY T  SI+     ++  + G++ H  I K   +  ++ + N LV MYA  G +++A +
Sbjct: 415 PDYVTFASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSEAKR 474

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           +F S+ ++D V++ SL+ G    G   +AV+LFE+M++ +IKPD  T + VLSAC H+G 
Sbjct: 475 IFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAVLSACSHSGL 534

Query: 179 IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
           +++    F  M++   L P R EHY  +  L GR G LN+A+  I  M   P  +++  L
Sbjct: 535 VNQAELLFAEMQSVHGLSP-RLEHYACMADLFGRVGLLNKAKEIITRMPYRPTSAIWATL 593

Query: 239 LSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
           + AC +HGN +I   +A+++L++ P     YVL++N+  A   W    +IRTLM + G+ 
Sbjct: 594 IGACCIHGNMDIGEWAAEKLLEMRPEHSGYYVLIANMYAAAGSWSKLAEIRTLMRDSGVA 653

Query: 299 KKPGYSWV 306
           K PG SWV
Sbjct: 654 KIPGCSWV 661



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 116/242 (47%), Gaps = 8/242 (3%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F+++ S     N ++WN I  G   +G+  QALK  S+MR  GI +D   +   +GA   
Sbjct: 269 FESMQSKCLEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSH 328

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           I   + GK++H    +  +     VQN LV MYA C  I  A  +F   D++  ++WNS+
Sbjct: 329 IGAIRLGKEIHGFTIRHYHHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSM 388

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           L G  H G   EA+ LF ++    ++PD  TF  +L  C     +  G ++   +     
Sbjct: 389 LSGLTHLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITKHRD 448

Query: 195 LEPPRAEH---YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
                 +H   + A+V +  RAG ++EA+    S+S+      Y +L++   + G    A
Sbjct: 449 FR----DHLLLWNALVDMYARAGKVSEAKRIFYSLSKK-DEVTYTSLIAGYGMQGEGGKA 503

Query: 252 VR 253
           VR
Sbjct: 504 VR 505



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 92/185 (49%), Gaps = 4/185 (2%)

Query: 11  SSLDF-QNVYSSVRTRNQI---SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT 66
           SSL+F    ++ V T N     SWN +I  +      E A+  + +M   G+  D FT  
Sbjct: 125 SSLEFLPEAHTLVETSNLFRPCSWNILITSYVKHKLYEAAILAYKQMVSKGVRPDNFTFP 184

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
           SI+ A G     K G ++H  I       ++FV N L+ MY  CG ++ A  +F +M ER
Sbjct: 185 SILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMYGRCGEVDTARNLFDNMLER 244

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
           D VSWNS++   +  G  REA +LFE MQ   ++ +  T+ ++   C   G   + L+  
Sbjct: 245 DAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQALKLL 304

Query: 187 YLMRN 191
             MRN
Sbjct: 305 SQMRN 309



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 90/195 (46%), Gaps = 7/195 (3%)

Query: 37  FCNLGSGEQALKCFS--EMRQA---GIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKI 91
           F + G   ++ + FS  ++R +     D+   +I+ ++ +    S    GKQ+H  I   
Sbjct: 49  FASHGQLSKSFEAFSLIQLRTSYNDSFDLILQSISILLVSCTKSSSLPPGKQLHGHIISS 108

Query: 92  GYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLF 151
           G   + F+ ++LV  Y+    + +A+ +  + +     SWN L+     H     A+  +
Sbjct: 109 GLVEDSFLVSKLVMFYSSLEFLPEAHTLVETSNLFRPCSWNILITSYVKHKLYEAAILAY 168

Query: 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLG 211
           +QM    ++PD  TF  +L AC     +  GL+    + + ++  P     + A++ + G
Sbjct: 169 KQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWST--PWSLFVHNALISMYG 226

Query: 212 RAGFLNEAESFINSM 226
           R G ++ A +  ++M
Sbjct: 227 RCGEVDTARNLFDNM 241


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 167/301 (55%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C  SL  + V+  +++RN + W A++A     G  E+AL  FS+M Q  +  + FT 
Sbjct: 279 YGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTY 338

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   +S  + G  +H    K G+  +V V N L+ MYA  G I  A KVFS M  
Sbjct: 339 AVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMH 398

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+++WN+++ G +HHG  ++A+ +F+ M   E  P+  TF  VLSAC H G + +G  Y
Sbjct: 399 RDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYY 458

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            + +     ++P   EHYT IV LL + G LNEA +F+ +         ++ LL+AC VH
Sbjct: 459 LHHLMKQFGVQPG-LEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVH 517

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +    A+ VL++ PND   Y LLSN+      WD    +R LM ++ I+K+PG SW
Sbjct: 518 QNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVSW 577

Query: 306 V 306
           +
Sbjct: 578 I 578



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 124/250 (49%), Gaps = 8/250 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFT 64
           Y++ +      N++  +  RN +SW+A++ G+   G   + ++   +M   G +  + + 
Sbjct: 76  YAKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYI 135

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +   + +       +EG+Q H L+ K G+  + +V+N LV MY+ C  + DA  V++ + 
Sbjct: 136 LAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVP 195

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             D+V++NS+L     +GY RE +++   M    +K D  TF+   S C     +  GL 
Sbjct: 196 VNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLH 255

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM-SRNPGPSVYKALLSAC 242
            +  ++ +D   +   A   +AI+ + G+ G    A    + + SRN    ++ A++++C
Sbjct: 256 VHGKMLTSDVECD---AYVSSAIINMYGKCGKSLMARGVFDGLQSRN--VVLWTAVMASC 310

Query: 243 QVHGNREIAV 252
             +G  E A+
Sbjct: 311 FQNGCFEEAL 320



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D   V++ V   + +++N+I++     G   + L+    M    +  D  T 
Sbjct: 178 YSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTF 237

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +       +   + G  +H  +     + + +V + ++ MY  CG    A  VF  +  
Sbjct: 238 VNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQS 297

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           R++V W +++  C  +G   EA+ LF +M++  +K +  T+ V+L+AC
Sbjct: 298 RNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNAC 345



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 78  FKEGKQMHA--LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
            K GK +H+  ++     ++++   N L+  YA    ++ A+ +F  M ER++VSW++L+
Sbjct: 45  LKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALM 104

Query: 136 LGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G   +G+S + ++L + M  +  + P+     + +S+CC  G +++G Q
Sbjct: 105 TGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQ 154


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 166/291 (57%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++++  +  R+ +SW A+I G+       +AL+ F EM+ + +  D FT+ S++ A   +
Sbjct: 231 RDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQL 290

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G+ +   + + G   + FV N L+ MY+ CG+I  A  VF  M  RD  +W +++
Sbjct: 291 GALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAII 350

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           LG A +GY  EA+++F +M      PD  TF+ VL+AC HAG +DKG ++F  MR   ++
Sbjct: 351 LGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNI 410

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
             P   HY  I+ L GRAG + EA   I+ M   P  +++  LL+AC+VHGN EI     
Sbjct: 411 -APNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVT 469

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +R+L + P +  +Y LLSN+    + W+D   +R  +  +GI+K+PG S +
Sbjct: 470 ERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLI 520



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 33/195 (16%)

Query: 21  SVRTRNQ-ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG-F 78
           S R R+  + WNA+I+G        +A   F +M +AG      T  S++ A G  +G  
Sbjct: 102 SERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDV 161

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC---------------------------- 110
             G Q+H  +   G   ++ V+N LV MYA C                            
Sbjct: 162 LLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGL 221

Query: 111 ---GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
              G +++A  +F  M ERD VSW +++ G       REA+++F +MQ + +  D  T +
Sbjct: 222 TRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMV 281

Query: 168 VVLSACCHAGFIDKG 182
            V++AC   G ++ G
Sbjct: 282 SVITACAQLGALEMG 296



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 6/169 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S     +V+  +  R++ +W AII G    G GE+A++ F  M       D  T 
Sbjct: 322 YSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTF 381

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYD--SNVFVQNRLVFMYAICGAINDANKVFSSM 123
             ++ A        +G++   L  +  Y+   NV     ++ ++   G I +A      M
Sbjct: 382 IGVLTACTHAGLVDKGREFF-LSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQM 440

Query: 124 D-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
               +   W +LL  C  HG S     + E++   ++ P+ +T   +LS
Sbjct: 441 PMTPNSTIWGTLLAACRVHGNSEIGELVTERL--LQMDPENSTVYTLLS 487



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 6/139 (4%)

Query: 38  CNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNV 97
           C + + E A+  ++ M   G   D +T   ++ A+   S     + +HA + K G   N 
Sbjct: 19  CLVAAREDAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNA 78

Query: 98  FVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG---CAHHGYSREAVQLFEQM 154
            V   LV  YA  G    A  + S  +    V WN+L+ G   C   G   EA   F  M
Sbjct: 79  HVATSLVTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFG---EACCSFVDM 135

Query: 155 QKTEIKPDGTTFLVVLSAC 173
            +    P   T++ VLSAC
Sbjct: 136 ARAGAAPTPVTYVSVLSAC 154


>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Brachypodium distachyon]
          Length = 652

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 172/304 (56%), Gaps = 2/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ YSR       + V+     ++ ++W A++ G+       +AL+ F  M   GI ID 
Sbjct: 219 VVAYSRSRDMGSAEEVFGQCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDE 278

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            ++T  + A   +   K    +  +    G+  NV V + LV MYA CG I++A KVF  
Sbjct: 279 VSLTGAISACAQLGAVKRAAWVQEIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDG 338

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDK 181
           M E+++ +++S+++G A HG +REA+ LF+ M ++ ++ P+  TF+ VL+AC HAG +  
Sbjct: 339 MQEKNVYTYSSMVVGLASHGRAREAIALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTD 398

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G  YF  M++   + P  A+HYT +V LLGRAG ++EA   + SM+  P   V+ ALL A
Sbjct: 399 GRYYFAQMKDKYGILP-SADHYTCMVDLLGRAGLVDEALDLVRSMTVEPHGGVWGALLGA 457

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++HG  E+A  +A+ +  L P     YVLLSN   A   WD+   +R +M +R ++K P
Sbjct: 458 CRIHGKTEVAKVAAEHLFKLEPEGIGNYVLLSNTLAAAGKWDEVSKVRKVMRSRRLKKVP 517

Query: 302 GYSW 305
             SW
Sbjct: 518 AVSW 521



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 32/130 (24%)

Query: 85  HALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSM-------------------- 123
           HA+ F +G +D + FV+N L+  Y  CG +  A KVF  M                    
Sbjct: 168 HAVSFLVGGFDKHRFVENSLIGAYIACGDVGAARKVFDEMVVKDVICWTSIVVAYSRSRD 227

Query: 124 -----------DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
                        +D+V+W +++ G A +    +A+++F++M    I  D  +    +SA
Sbjct: 228 MGSAEEVFGQCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISA 287

Query: 173 CCHAGFIDKG 182
           C   G + + 
Sbjct: 288 CAQLGAVKRA 297


>gi|218190567|gb|EEC72994.1| hypothetical protein OsI_06907 [Oryza sativa Indica Group]
          Length = 711

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 172/307 (56%), Gaps = 8/307 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---D 59
           I  YSRC        V+ ++ T+N +SW A+I+GF      E  L  F+ MR +     D
Sbjct: 364 ITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISGFALHNRVEPCLHLFASMRLSSCKPND 423

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           I + T+ S+     +++    GK +HAL  ++G+ S V V N L+ MYA CG I++A  +
Sbjct: 424 ITFATLFSVCTNHALLA---LGKSVHALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQSI 480

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  +  +DLVSWN+++ GC+ +G ++  + L ++M++  I PD  +FL VLS+C HA  +
Sbjct: 481 FGFIACKDLVSWNAMIFGCSQYGLAKHCLDLLKEMERQHIVPDALSFLGVLSSCRHARLV 540

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           ++G   F  M        P  +HY+ +V LLGRAG L EA   I +MS  P   ++ +LL
Sbjct: 541 EEGRHCFKTMIEHGI--KPGLDHYSCMVDLLGRAGLLEEAWDLIQTMSIPPNAVIWGSLL 598

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
            +C+VHGN  I +++A+  L L P   A ++ L+N+     CW D   +R  M  RG++ 
Sbjct: 599 GSCRVHGNISIGIQAAEHRLKLEPGCAATHIQLANLYATIGCWSDVARVRMAMKARGLKT 658

Query: 300 KPGYSWV 306
             G SW+
Sbjct: 659 NIGCSWI 665



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/264 (35%), Positives = 148/264 (56%), Gaps = 8/264 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---D 59
           I  YSRC        V+ ++ T+N +SW A+I+GF      E  L  F+ M  +     D
Sbjct: 55  ITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISGFALHNRVEPCLHLFASMMLSSCKPND 114

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           I + T+ S+     +++    G+ +HAL  ++G+ S V V N L+ MYA CG I +A  +
Sbjct: 115 ITFATLFSVCTKHALLA---LGRSVHALQMRMGFHSYVHVSNALLSMYAKCGCIEEAQFI 171

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  +  +DLVSWN+++ GC+ +  ++  + L ++M++  I PD  +FL VLS+C HA  +
Sbjct: 172 FGCIACKDLVSWNAIIFGCSQYVLAKHCLDLLKEMERQHIVPDALSFLGVLSSCRHARLV 231

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           ++G   F  M        P  +HY+ +V LLGRAG L EA   I +MS  P   ++ +LL
Sbjct: 232 EEGRHCFKTMIEHGI--KPGLDHYSCMVDLLGRAGLLEEAWDLIQTMSIPPNAVIWGSLL 289

Query: 240 SACQVHGNREIAVRSAKRVLDLWP 263
            +C+VHGN  I +++A+  L L P
Sbjct: 290 GSCRVHGNISIGIQAAEHRLKLEP 313



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 20/189 (10%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F +G Q+H L+ K+G DS VF+ + L+ +Y+ C  +  +  VF +M  ++ VSW +++ G
Sbjct: 338 FTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISG 397

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A H      + LF  M+ +  KP+  TF  + S C +   +  G       ++  +L+ 
Sbjct: 398 FALHNRVEPCLHLFASMRLSSCKPNDITFATLFSVCTNHALLALG-------KSVHALQM 450

Query: 198 PRAEH-----YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
               H       A++ +  + G ++EA+S    ++     S + A++  C  +G      
Sbjct: 451 RMGFHSYVHVSNALLSMYAKCGCIDEAQSIFGFIACKDLVS-WNAMIFGCSQYG------ 503

Query: 253 RSAKRVLDL 261
             AK  LDL
Sbjct: 504 -LAKHCLDL 511



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F +G Q+H L+ K+G DS VF+ + L+ +Y+ C  +  +  VF +M  ++ VSW +++ G
Sbjct: 29  FTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISG 88

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            A H      + LF  M  +  KP+  TF  + S C     +  G
Sbjct: 89  FALHNRVEPCLHLFASMMLSSCKPNDITFATLFSVCTKHALLALG 133


>gi|449435190|ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77170-like [Cucumis sativus]
          Length = 609

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 108/289 (37%), Positives = 165/289 (57%), Gaps = 3/289 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+     R   SWNAIIAG    G  ++A+  F ++RQ+G++ D FTI S+  A G +  
Sbjct: 316 VFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLGN 375

Query: 78  FKEGKQMHALIF--KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
            +   QMH  +F  K+   SN+ + N L+ MY  CG ++ A KVFS+M  R++ SW SL+
Sbjct: 376 LELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMGHRNVSSWTSLI 435

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           +G A HG  ++A++ F+ M++  + P+  TF+ VLSAC H G I++G  YF +M+N    
Sbjct: 436 VGYAMHGQVKQALENFQFMREAGVPPNQVTFVGVLSACVHGGMINEGKHYFDMMKNVYGF 495

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           + P+  HY  +V LL +AG L EA   I  M       ++  L+  C+ HGN EI   + 
Sbjct: 496 K-PQLPHYGCMVDLLSKAGLLEEARRMIEEMPMKANSIIWGCLIGGCEKHGNVEIGEWAG 554

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           K + +L P +  +YV+LSN+      W +A  +R +M  R + K PGYS
Sbjct: 555 KHLQELEPWNDGVYVVLSNIYATNGMWKEAQKMRDVMKQRQLAKVPGYS 603



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 134/275 (48%), Gaps = 12/275 (4%)

Query: 9   CDSSLDFQNVYSSVRTRNQIS-------WNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           C + L+   +++ V   N +        WN II  +  L     AL  + +M +AGI  D
Sbjct: 199 CTNVLELYQIHAHVLRTNMLENHPSSFYWNIIIRSYTRLEVPRIALFVYIDMLRAGILPD 258

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +T+  +  A+ +   F  G Q+H++  ++G++ + + ++ L+ +Y+  G +  A KVF 
Sbjct: 259 CYTLPIVFKALSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLECACKVFE 318

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
               R L SWN+++ G +  G ++EAV +F +++++ ++PD  T + V SAC   G ++ 
Sbjct: 319 QNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLGNLEL 378

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLS 240
            LQ    +               +++ + G+ G ++ A + F N   RN   S + +L+ 
Sbjct: 379 SLQMHKFVFQVKVTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMGHRN--VSSWTSLIV 436

Query: 241 ACQVHGNREIAVRSAK--RVLDLWPNDPAIYVLLS 273
              +HG  + A+ + +  R   + PN      +LS
Sbjct: 437 GYAMHGQVKQALENFQFMREAGVPPNQVTFVGVLS 471



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C        V+S++  RN  SW ++I G+   G  +QAL+ F  MR+AG+  +  T 
Sbjct: 407 YGKCGRMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMREAGVPPNQVTF 466

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A        EGK    ++  + G+   +     +V + +  G + +A ++   M 
Sbjct: 467 VGVLSACVHGGMINEGKHYFDMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEARRMIEEMP 526

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            + + + W  L+ GC  HG         + +Q+ E   DG    VVLS
Sbjct: 527 MKANSIIWGCLIGGCEKHGNVEIGEWAGKHLQELEPWNDGV--YVVLS 572


>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
 gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
          Length = 701

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 169/287 (58%), Gaps = 1/287 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  +N +SWN++I+GF   G    A   F  MR+     D+ T  S + A   ++ 
Sbjct: 413 IFRRMSRKNTVSWNSVISGFVQNGLFVDAFHHFMLMRRGTNRADWSTYASCLRACANLAA 472

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G+Q+H+L+ + G+ +++F +N L+  YA CG + +A ++F  M  +D+VSWN+L+ G
Sbjct: 473 LHVGRQLHSLLVRSGHINDLFARNALISTYAKCGRMLEAKQIFDEMVGKDIVSWNALVDG 532

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G   EA+ +F +M+   ++PD  TF+ +LSAC  AG ID+GL +F  M  + SL+P
Sbjct: 533 YASNGQGTEAISVFREMEANGVRPDEVTFVGILSACSRAGLIDEGLGFFNSMTEEYSLKP 592

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
             AEHY  +  LLGRAG LNEA   +  M   P   V+ ALL ACQ++ N E+A  +A++
Sbjct: 593 V-AEHYACMADLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACQMYKNHELARLAAEK 651

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           + +L P   + YVLLSN+S     WD+A   R  +  +G  K PG +
Sbjct: 652 LSELEPCRASNYVLLSNISAEAGKWDEAEKARASIKEKGANKPPGLA 698



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 17/209 (8%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  + +RN +SWNA+IA   + G    A   F  M       D F+ T +V        
Sbjct: 71  LFDGMPSRNAVSWNAMIAALSDHGRVADARGLFDRMPSR----DDFSWTVMVSCYARAGE 126

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            +  +    ++ ++  D      N ++  YA  G  +DA K+   M   DL SWNS L G
Sbjct: 127 LELARD---VLDRMPGDKCTACYNAMISGYAKNGRFDDAVKLLREMPAPDLFSWNSALAG 183

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
               G    AVQ F++M    ++ D  ++ ++L     AG +D    +F        +E 
Sbjct: 184 LTQSGQMVRAVQFFDEM----VEKDMVSWNLMLEGFVRAGDLDAAASFF------GRIES 233

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           P    +  ++    RAG +++A    + M
Sbjct: 234 PNVVSWVTLLNGYCRAGRISDARDLFDRM 262



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 12/184 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R     D ++++  +  RN ++ N ++ G+  L   E+A K F EM       +  + 
Sbjct: 246 YCRAGRISDARDLFDRMPERNVVACNVMLDGYVRLSRLEEACKLFDEMPGK----NSISW 301

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+I+  +      +E K    L+ K+ ++  V  +  L+  Y     +NDA ++F  M+ 
Sbjct: 302 TTIISGLARAGKLQEAKD---LLDKMSFNC-VAAKTALMHGYLQRNMVNDARQIFDGMEV 357

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D V WN+++ G    G   EA+ LF++M       D  ++  +++     G + K +  
Sbjct: 358 HDTVCWNTMISGYVQRGMLEEAMLLFQRMPNK----DTVSWNTMIAGYAQGGQMRKAIGI 413

Query: 186 FYLM 189
           F  M
Sbjct: 414 FRRM 417



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 38/219 (17%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I TY++C   L+ + ++  +  ++ +SWNA++ G+ + G G +A+  F EM   G+  D 
Sbjct: 499 ISTYAKCGRMLEAKQIFDEMVGKDIVSWNALVDGYASNGQGTEAISVFREMEANGVRPDE 558

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   I+ A        EG                             G  N   + +S 
Sbjct: 559 VTFVGILSACSRAGLIDEG----------------------------LGFFNSMTEEYSL 590

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
               +  +  + LLG A  G   EA +L + MQ   I+P+   +  +L AC     + K 
Sbjct: 591 KPVAEHYACMADLLGRA--GKLNEAFELVQGMQ---IQPNAGVWGALLGACQ----MYKN 641

Query: 183 LQYFYLMRNDAS-LEPPRAEHYTAIVGLLGRAGFLNEAE 220
            +   L     S LEP RA +Y  +  +   AG  +EAE
Sbjct: 642 HELARLAAEKLSELEPCRASNYVLLSNISAEAGKWDEAE 680



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 112/286 (39%), Gaps = 28/286 (9%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM---------------------RQA 56
           ++  +  +N ISW  II+G    G  ++A     +M                       A
Sbjct: 289 LFDEMPGKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMVNDA 348

Query: 57  GIDIDYFTITSIVGAIGVISGFKEGKQMHA--LIFKIGYDSNVFVQNRLVFMYAICGAIN 114
               D   +   V    +ISG+ +   +    L+F+   + +    N ++  YA  G + 
Sbjct: 349 RQIFDGMEVHDTVCWNTMISGYVQRGMLEEAMLLFQRMPNKDTVSWNTMIAGYAQGGQMR 408

Query: 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
            A  +F  M  ++ VSWNS++ G   +G   +A   F  M++   + D +T+   L AC 
Sbjct: 409 KAIGIFRRMSRKNTVSWNSVISGFVQNGLFVDAFHHFMLMRRGTNRADWSTYASCLRACA 468

Query: 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
           +   +  G Q   L+     +    A +  A++    + G + EA+   + M      S 
Sbjct: 469 NLAALHVGRQLHSLLVRSGHINDLFARN--ALISTYAKCGRMLEAKQIFDEMVGKDIVS- 525

Query: 235 YKALLS--ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
           + AL+   A    G   I+V        + P++     +LS  S+A
Sbjct: 526 WNALVDGYASNGQGTEAISVFREMEANGVRPDEVTFVGILSACSRA 571



 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 12/158 (7%)

Query: 97  VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
           VF  N+ +   A  G +  A ++F SM  R+ V++NS+L   A HG   EA  LF+ M  
Sbjct: 18  VFRSNQELTRLARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPS 77

Query: 157 TEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAE-HYTAIVGLLGRAGF 215
                +  ++  +++A    G +      F  M       P R +  +T +V    RAG 
Sbjct: 78  R----NAVSWNAMIAALSDHGRVADARGLFDRM-------PSRDDFSWTVMVSCYARAGE 126

Query: 216 LNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           L  A   ++ M  +   + Y A++S    +G  + AV+
Sbjct: 127 LELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAVK 164



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 22/202 (10%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI- 88
           +NA+I+G+   G  + A+K   EM       D F+  S       ++G  +  QM   + 
Sbjct: 146 YNAMISGYAKNGRFDDAVKLLREMPAP----DLFSWNS------ALAGLTQSGQMVRAVQ 195

Query: 89  -FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
            F    + ++   N ++  +   G ++ A   F  ++  ++VSW +LL G    G   +A
Sbjct: 196 FFDEMVEKDMVSWNLMLEGFVRAGDLDAAASFFGRIESPNVVSWVTLLNGYCRAGRISDA 255

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
             LF++M +  +        V+L        +++  + F  M    S+       +T I+
Sbjct: 256 RDLFDRMPERNV----VACNVMLDGYVRLSRLEEACKLFDEMPGKNSIS------WTTII 305

Query: 208 GLLGRAGFLNEAESFINSMSRN 229
             L RAG L EA+  ++ MS N
Sbjct: 306 SGLARAGKLQEAKDLLDKMSFN 327



 Score = 44.7 bits (104), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 12/140 (8%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           N    N ++   A  G I++A  +F  M  R+ VSWN+++   + HG   +A  LF++M 
Sbjct: 48  NTVTYNSMLSALARHGRIDEARALFDGMPSRNAVSWNAMIAALSDHGRVADARGLFDRMP 107

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF 215
                 D  ++ V++S    AG ++        M  D          Y A++    + G 
Sbjct: 108 SR----DDFSWTVMVSCYARAGELELARDVLDRMPGDKC-----TACYNAMISGYAKNGR 158

Query: 216 LNEAESFINSMSRNPGPSVY 235
            ++A   +  M   P P ++
Sbjct: 159 FDDAVKLLREM---PAPDLF 175


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 174/303 (57%), Gaps = 3/303 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + V+  +  ++ ++WNA+I G+   G  ++A+  FS MR++G++ D  T+
Sbjct: 272 YGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITL 331

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   I     GK +     + G  ++++V   L+ MYA CG+++DA +VF  M +
Sbjct: 332 VGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQ 391

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT--EIKPDGTTFLVVLSACCHAGFIDKGL 183
           ++ VSWN+++   A HG  +E++ LF++M K    ++P+  +F+ VLSAC HAG +D+G 
Sbjct: 392 KNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGR 451

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           Q F LM +   L  P+ EH++ +V LL RAG ++EA  FI  M   P   V  ALL ACQ
Sbjct: 452 QLFDLMSSSFGL-VPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGACQ 510

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
              N +++ R    +L++ P +   Y++ S +      WDD+  +R LM  RG+ K PG 
Sbjct: 511 KRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRGVTKTPGC 570

Query: 304 SWV 306
           SW+
Sbjct: 571 SWI 573



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 145/277 (52%), Gaps = 11/277 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC      + V+  +  ++ +SWN++I+G+  +G    A+  F EMR AG + D 
Sbjct: 168 ITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDE 227

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ SI+GA G +     G  +   + +   D N FV + L+ MY  CG ++ A +VF  
Sbjct: 228 MTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDR 287

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ++D+V+WN+++ G A +G S EA+ LF  M+++ + PD  T + VLSAC   G +D G
Sbjct: 288 MVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFG 347

Query: 183 LQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
                 +   AS    + + Y  TA++ +  + G L++A      M +    S + A++S
Sbjct: 348 ----KWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVS-WNAMIS 402

Query: 241 ACQVHGNREIAVRSAKRVLD----LWPNDPAIYVLLS 273
           A   HG  + ++   KR+      + PND +   +LS
Sbjct: 403 ALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLS 439



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 113/222 (50%), Gaps = 12/222 (5%)

Query: 14  DFQN---VYSSVRTRNQISWNAIIAGFCNLGSG-EQALKCFSEMRQAGIDIDYFTITSIV 69
           DF N   ++S +   N+ ++N +I G           ++ + +M+  GI  + FT   + 
Sbjct: 74  DFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVF 133

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
            A   +     G+  H+ + K G  ++  V++ L+ MY+ CG +  A +VF  + E+DLV
Sbjct: 134 IACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLV 193

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF--- 186
           SWNS++ G +  GY+ +AV LF +M+    +PD  T + +L AC   G  D GL  +   
Sbjct: 194 SWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLG--DLGLGSWIEG 251

Query: 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
           +++ N+  L        +A++G+ G+ G L+ A    + M +
Sbjct: 252 FVVENEMDLNSFVG---SALIGMYGKCGDLSSARRVFDRMVK 290


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 107/292 (36%), Positives = 165/292 (56%), Gaps = 1/292 (0%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           F  + S     ++ +WNA+I G    G  E+A++   +M+  G   +  TI+S + A  +
Sbjct: 322 FSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSI 381

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +   + GK++H  +F+     ++     LV+MYA CG +N +  VF  +  +D+V+WN++
Sbjct: 382 LESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTM 441

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           ++  A HG  RE + LFE M ++ IKP+  TF  VLS C H+  +++GLQ F  M  D  
Sbjct: 442 IIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHL 501

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           +EP  A HY  +V +  RAG L+EA  FI  M   P  S + ALL AC+V+ N E+A  S
Sbjct: 502 VEPD-ANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKIS 560

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           A ++ ++ PN+P  YV L N+      W +A + R LM  RGI K PG SW+
Sbjct: 561 ANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWL 612



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 90/189 (47%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C      + V+  +  ++ +SW ++ + + N G     L  F EM   G+  + 
Sbjct: 174 IHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNS 233

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T++SI+ A   +   K G+ +H    + G   NVFV + LV +YA C ++  A  VF  
Sbjct: 234 VTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDL 293

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD+VSWN +L     +    + + LF QM    ++ D  T+  V+  C   G  +K 
Sbjct: 294 MPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKA 353

Query: 183 LQYFYLMRN 191
           ++    M+N
Sbjct: 354 VEMLRKMQN 362



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 73/158 (46%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++ ++   +  + + +I+ F   G   +A++ ++ +R  GI        ++  A G  
Sbjct: 86  QQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGAS 145

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                 K++H    + G  S+ F+ N L+  Y  C  +  A +VF  +  +D+VSW S+ 
Sbjct: 146 GDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMS 205

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
               + G  R  + +F +M    +KP+  T   +L AC
Sbjct: 206 SCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPAC 243



 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 99/239 (41%), Gaps = 47/239 (19%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++C      +NV+  +  ++ ++WN +I      G+G + L  F  M Q+GI  + 
Sbjct: 411 VYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNS 470

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T T      GV+SG                       +RLV          +  ++F+S
Sbjct: 471 VTFT------GVLSGCS--------------------HSRLV---------EEGLQIFNS 495

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAV--QLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           M    LV  ++    C    +SR     + +E +Q+  ++P  + +  +L AC     + 
Sbjct: 496 MGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGAC----RVY 551

Query: 181 KGLQYFYLMRNDA-SLEPPRAEHYTAIVGLLGRAGFLNEA-ESFI----NSMSRNPGPS 233
           K ++   +  N    +EP    +Y ++  +L  A   +EA E+ I      +++ PG S
Sbjct: 552 KNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCS 610



 Score = 37.7 bits (86), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G    A ++F ++ + D  + ++L+      G   EA++L+  ++   IKP  + FL V 
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 171 SACCHAG 177
            AC  +G
Sbjct: 140 KACGASG 146


>gi|449506393|ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77170-like [Cucumis sativus]
          Length = 614

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 108/289 (37%), Positives = 165/289 (57%), Gaps = 3/289 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+     R   SWNAIIAG    G  ++A+  F ++RQ+G++ D FTI S+  A G +  
Sbjct: 321 VFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLGN 380

Query: 78  FKEGKQMHALIF--KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
            +   QMH  +F  K+   SN+ + N L+ MY  CG ++ A KVFS+M  R++ SW SL+
Sbjct: 381 LELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMGHRNVSSWTSLI 440

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           +G A HG  ++A++ F+ M++  + P+  TF+ VLSAC H G I++G  YF +M+N    
Sbjct: 441 VGYAMHGQVKQALENFQFMREAGVPPNQVTFVGVLSACVHGGMINEGKHYFDMMKNVYGF 500

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           + P+  HY  +V LL +AG L EA   I  M       ++  L+  C+ HGN EI   + 
Sbjct: 501 K-PQLPHYGCMVDLLSKAGLLEEARRMIEEMPMKANSIIWGCLIGGCEKHGNVEIGEWAG 559

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           K + +L P +  +YV+LSN+      W +A  +R +M  R + K PGYS
Sbjct: 560 KHLQELEPWNDGVYVVLSNIYATNGMWKEAQKMRDVMKQRQLAKVPGYS 608



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 133/275 (48%), Gaps = 12/275 (4%)

Query: 9   CDSSLDFQNVYSSVRTRNQIS-------WNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           C + L+   +++ V   N +        WN II  +  L     AL  +  M QAGI  D
Sbjct: 204 CTNVLELYQIHAHVLRTNMLENHPSSFYWNIIIRSYTRLEVPRIALFVYIAMLQAGILPD 263

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +T+  +  A+ +   F  G Q+H++  ++G++ + + ++ L+ +Y+  G +  A KVF 
Sbjct: 264 CYTLPIVFKALSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLECACKVFE 323

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
               R L SWN+++ G +  G ++EAV +F +++++ ++PD  T + V SAC   G ++ 
Sbjct: 324 QNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLGNLEL 383

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLS 240
            LQ    +               +++ + G+ G ++ A + F N   RN   S + +L+ 
Sbjct: 384 SLQMHKFVFQVKVTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMGHRN--VSSWTSLIV 441

Query: 241 ACQVHGNREIAVRSAK--RVLDLWPNDPAIYVLLS 273
              +HG  + A+ + +  R   + PN      +LS
Sbjct: 442 GYAMHGQVKQALENFQFMREAGVPPNQVTFVGVLS 476



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C        V+S++  RN  SW ++I G+   G  +QAL+ F  MR+AG+  +  T 
Sbjct: 412 YGKCGRMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMREAGVPPNQVTF 471

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A        EGK    ++  + G+   +     +V + +  G + +A ++   M 
Sbjct: 472 VGVLSACVHGGMINEGKHYFDMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEARRMIEEMP 531

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            + + + W  L+ GC  HG         + +Q+ E   DG    VVLS
Sbjct: 532 MKANSIIWGCLIGGCEKHGNVEIGEWAGKHLQELEPWNDGV--YVVLS 577


>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 109/291 (37%), Positives = 165/291 (56%), Gaps = 1/291 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   ++  +  +N +SW  +I GF      E+AL+CF EM+ AG+  D+ T+ +I+ A  
Sbjct: 175 DALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACA 234

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +     G  +H L+ K  +  NV V N L+ MYA CG I  A +VF  M +R+LVSWNS
Sbjct: 235 NLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNS 294

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           +++G A +G + +A+  F  M+K  ++P+G ++   L+AC HAG ID+GL+ F  ++ D 
Sbjct: 295 IIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDH 354

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
               PR EHY  +V L  RAG L EA   I  M   P   V  +LL+AC+  G+ E+A +
Sbjct: 355 R-NSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELAEK 413

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
             K  ++L+P   + YVL SN+  A   WD A  +R  M  RG++K   +S
Sbjct: 414 VMKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLAFS 464



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 37/240 (15%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG---VISGFKE 80
           +   +SW + I+  C   +  +A   F +M +A ++ ++ T+ +++ A       +    
Sbjct: 49  SNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITF 108

Query: 81  GKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           G  +H   FK G+  N V V   L+ MYA CG ++ A  VF  M  R+LVSWN+++ G  
Sbjct: 109 GAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYM 168

Query: 140 HHGYSREAVQLFE-------------------------------QMQKTEIKPDGTTFLV 168
            +G   +A++LF+                               +MQ   + PD  T + 
Sbjct: 169 KNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIA 228

Query: 169 VLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
           ++SAC + G +  GL    L+      +  +     +++ +  R G +  A    + MS+
Sbjct: 229 IISACANLGALGLGLWVHRLVMKKEFRDNVKV--LNSLIDMYARCGCIELARQVFDGMSQ 286



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 10/174 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+RC      + V+  +  RN +SWN+II GF   G  ++AL  F  M++ G++ + 
Sbjct: 265 IDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNG 324

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVF 120
            + TS + A        EG ++ A I K  + ++  +++   LV +Y+  G + +A  V 
Sbjct: 325 VSYTSALTACSHAGLIDEGLKIFADI-KRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVI 383

Query: 121 SSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLS 171
             M    + V   SLL  C   G     V+L E++ K   E+ P G +  V+ S
Sbjct: 384 KKMPMMPNEVVLGSLLAACRTQG----DVELAEKVMKYQVELYPGGDSNYVLFS 433


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+       ++++  ++ R+ + WN +I G+   G   ++LK F  M  A    +  T+
Sbjct: 217 YSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTV 276

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A G +   + G+ +H+ I   G   NV V   L+ MY+ CG++ DA  VF  + +
Sbjct: 277 LAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRD 336

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+V+WNS+++G A HG+S+ A+QLFE+M +T  KP   TF+ +LSAC H G +++G  +
Sbjct: 337 KDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSF 396

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LMR+   +E P+ EHY  +V LLGRAG L EA   + +M+    P ++  LL  C++H
Sbjct: 397 FRLMRDKYGIE-PKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLH 455

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++    AK ++D    +   YVLLSN+  AT  W+    +RTLM   GI K+ G S 
Sbjct: 456 VNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSS 515

Query: 306 V 306
           +
Sbjct: 516 I 516



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 117/267 (43%), Gaps = 38/267 (14%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+++    N  S++AII         ++A   +S+M   G++ + FT +S++ +  + SG
Sbjct: 101 VFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESG 160

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS------- 130
               K +H    K+G  S+++V+  LV +YA  G +  A ++F  M ER LVS       
Sbjct: 161 ----KVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTC 216

Query: 131 ------------------------WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
                                   WN ++ G A  G   E+++LF +M   +  P+  T 
Sbjct: 217 YSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTV 276

Query: 167 LVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           L VLSAC   G ++ G      + N            TA++ +  + G L +A    + +
Sbjct: 277 LAVLSACGQLGALESGRWIHSYIENKGI--QINVHVGTALIDMYSKCGSLEDARLVFDRI 334

Query: 227 SRNPGPSVYKALLSACQVHGNREIAVR 253
            R+     + +++    +HG  + A++
Sbjct: 335 -RDKDVVAWNSMIVGYAMHGFSQHALQ 360



 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 45/91 (49%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           Q+HA + + G   N  +  +L   YA  G ++ +  VF++ DE ++ S+++++       
Sbjct: 65  QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSR 124

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
               A   + QM    ++P+  TF  VL +C
Sbjct: 125 LFDRAFGYYSQMLSCGVEPNAFTFSSVLKSC 155


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 106/287 (36%), Positives = 160/287 (55%), Gaps = 1/287 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++ +  ++ + WNA+I GF      ++AL  F EM+ + +  D  T+ + + A   +  
Sbjct: 344 LFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGA 403

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G  MH  + K     NV +   LV MYA CG I  A +VF  M  R+ ++W +++ G
Sbjct: 404 LDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICG 463

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG    A+  F +M    + PD  TF+ VLSACCH G +D+G  YFY M +   +  
Sbjct: 464 LALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGIS- 522

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P+ +HY+ +V LLGRAGFL EAE  I SM   P   V+ AL    ++HGN  +  R+A +
Sbjct: 523 PKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASK 582

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           +L+L P+D  IYVLL+N+    + W+ A  +R +M  RG+ K PG S
Sbjct: 583 LLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCS 629



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 125/278 (44%), Gaps = 40/278 (14%)

Query: 9   CDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           C   L  + ++     R+ +SWN+II G+   G  ++A   + +M +  +  D  T+  +
Sbjct: 203 CGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGV 262

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC------------------ 110
           V A   +     G+++H  I ++G +  V + N L+ MY  C                  
Sbjct: 263 VSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTV 322

Query: 111 -------------GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157
                        G +  A ++F+ M E+D+V WN+L+ G      S+EA+ LF +MQ +
Sbjct: 323 VSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQAS 382

Query: 158 EIKPDGTTFLVVLSACCHAGFIDKGL-QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFL 216
            + PD  T +  LSAC   G +D G+  + Y+ +++ ++        TA+V +  + G +
Sbjct: 383 SVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALG---TALVDMYAKCGNI 439

Query: 217 NEAESFINSMSRNPGPS--VYKALLSACQVHGNREIAV 252
            +A      M   PG +   + A++    +HG    A+
Sbjct: 440 KKAIQVFEEM---PGRNSLTWTAIICGLALHGQPHAAI 474



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 2/163 (1%)

Query: 12  SLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFTITSIV 69
           +LD+   + ++    N  SWN  I G+    +   A+  +  M + G  I D +T   + 
Sbjct: 103 NLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLF 162

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
                 S      ++   + ++G+DS++FV N ++ +   CG +  A K+F     RDLV
Sbjct: 163 KVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLV 222

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           SWNS++ G    G + EA  L+ +M +  + PD  T + V+SA
Sbjct: 223 SWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSA 265



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 6/153 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +      V+  +  RN ++W AII G    G    A+  FSEM   G+  D  T 
Sbjct: 433 YAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITF 492

Query: 66  TSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A        +G+   + +  K G    +   + LV +    G + +A ++  SM 
Sbjct: 493 IGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMP 552

Query: 125 -ERDLVSWNSLLLGCAHHGY----SREAVQLFE 152
            E D V W +L  G   HG      R A +L E
Sbjct: 553 FEPDAVVWGALFFGSRIHGNVHMGERAASKLLE 585


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 174/302 (57%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C   LD     +  +  R+ + WN++I+ F   G  E A+  F +M  +G   D  +
Sbjct: 460 YAKC-GRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVS 518

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++S + A   +     GK+MH  + +  + S+ FV + L+ MY+ CG +  A  VF+ MD
Sbjct: 519 LSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMD 578

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            ++ VSWNS++    +HG  RE + L+ +M +  I PD  TFLV++SAC HAG +D+G+ 
Sbjct: 579 GKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIH 638

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF+ M  +  +   R EHY  +V L GRAG ++EA   I SM   P   V+  LL AC++
Sbjct: 639 YFHCMTREYGIG-ARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGACRL 697

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN E+A  +++ +L+L P +   YVLLSNV      W     +R+LM  +G++K PGYS
Sbjct: 698 HGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWASVLKVRSLMKEKGVQKIPGYS 757

Query: 305 WV 306
           W+
Sbjct: 758 WI 759



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 85/164 (51%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + V+  +  R+ I WN ++ G+   G  + A+  F EMR +   ++  T T I+    
Sbjct: 165 DARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICA 224

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
               F  G Q+H L+   G++ +  V N LV MY+ CG +  A K+F++M + D V+WN 
Sbjct: 225 TRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNG 284

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           L+ G   +G++ EA  LF  M    +KPD  TF   L +   +G
Sbjct: 285 LIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESG 328



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 2/224 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C    D  N++  +  R  + WN +I G   LG  + AL  + +M  + +  D +T 
Sbjct: 56  YVLCGRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTF 115

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A G ++       +H     +G+  ++F  + L+ +YA  G I DA +VF  +  
Sbjct: 116 PYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPL 175

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD + WN +L G    G    A+  F +M+ +    +  T+  +LS C   G    G Q 
Sbjct: 176 RDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQL 235

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
             L+        P+  +   +V +  + G L  A    N+M + 
Sbjct: 236 HGLVIGSGFEFDPQVAN--TLVAMYSKCGNLLYARKLFNTMPQT 277



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 117/254 (46%), Gaps = 11/254 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+C + L  + +++++   + ++WN +IAG+   G  ++A   F+ M  AG+  D 
Sbjct: 255 VAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDS 314

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S + +I      +  K++H+ I +     +V++++ L+ +Y   G +  A K+F  
Sbjct: 315 VTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQ 374

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
               D+    +++ G   HG + +A+  F  + +  +  +  T   VL AC     +  G
Sbjct: 375 NILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPG 434

Query: 183 LQYFYLMRNDASLEPPRAEHY----TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
            +          +   R E+     +AI  +  + G L+ A  F   MS +     + ++
Sbjct: 435 KEL------HCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMS-DRDSVCWNSM 487

Query: 239 LSACQVHGNREIAV 252
           +S+   +G  EIA+
Sbjct: 488 ISSFSQNGKPEIAI 501



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 69/132 (52%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
            A+I+G+   G    A+  F  + Q G+  +  T+ S++ A   ++  K GK++H  I K
Sbjct: 384 TAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILK 443

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
              ++ V V + +  MYA CG ++ A + F  M +RD V WNS++   + +G    A+ L
Sbjct: 444 KRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDL 503

Query: 151 FEQMQKTEIKPD 162
           F QM  +  K D
Sbjct: 504 FRQMGMSGAKFD 515



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 52/109 (47%)

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + S+  A    S  ++ +Q+H  +   G        +R++ +Y +CG   DA  +F  ++
Sbjct: 14  LESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELE 73

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            R  + WN ++ G    G+   A+  + +M  + + PD  TF  V+ AC
Sbjct: 74  LRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC 122


>gi|326520249|dbj|BAK07383.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 170/310 (54%), Gaps = 8/310 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y R     +   V+  +  ++ I+W A+I+G    G  + AL  F +M   G+    
Sbjct: 245 IAGYCRAKRLDEAIRVFHMMPEQDTIAWTALISGHEQNGEEDAALDLFQQMLVEGMAPTP 304

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFK--IGYDS-NVFVQNRLVFMYAICGAINDANKV 119
           F + S +GA   +     G+++H  I +  IG D  N+F+ N L+ MY+ CG +  A  V
Sbjct: 305 FALVSSLGACAKLGLVTRGREVHGFILRRRIGLDPFNIFIHNALIDMYSKCGDMATAMLV 364

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F+ M ERD +SWNS++ G +H+G  ++++ +F++M   E++P   TFL VL+AC HAG +
Sbjct: 365 FARMSERDFISWNSMVTGFSHNGQGKQSLAMFKRMLDAEVQPTYVTFLAVLTACSHAGLV 424

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV---YK 236
             G +    M+       PRAEHY + +  LGR   L EA  FI  +S   GP     + 
Sbjct: 425 TDGRRILESMQYHGV--EPRAEHYASFIDALGRNHQLEEASEFIKGLSSRIGPGTTGSWG 482

Query: 237 ALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
           ALL AC+VHGN EIA + A+ +  L P +   YV+LSN+  A   WDDA  IR +M  +G
Sbjct: 483 ALLGACRVHGNTEIAEKVAESLFQLEPGNSGRYVMLSNIYAAAGQWDDARRIRAIMKEKG 542

Query: 297 IRKKPGYSWV 306
           +RK    SW+
Sbjct: 543 LRKDQACSWI 552



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 129/310 (41%), Gaps = 40/310 (12%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ-----AGIDIDYFTITSIVGAIGVISGF 78
           +RN +S+N II+     G   +AL+ F+ + +       + +D F + S+  A   +   
Sbjct: 129 SRNVVSYNTIISALARNGRQGEALRVFARLARDRCLGPEVALDRFAVVSVASACAGMGAL 188

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG- 137
           +  ++MH  +   G +  V + N +V  Y+  G + DA  +F+ M  +D VSW S++ G 
Sbjct: 189 RPLREMHGAVVVSGVEVTVIMANAMVDAYSKAGRMEDARTLFNQMSIQDTVSWTSMIAGY 248

Query: 138 C------------------------------AHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
           C                                +G    A+ LF+QM    + P     +
Sbjct: 249 CRAKRLDEAIRVFHMMPEQDTIAWTALISGHEQNGEEDAALDLFQQMLVEGMAPTPFALV 308

Query: 168 VVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
             L AC   G + +G + + +++R    L+P     + A++ +  + G +  A      M
Sbjct: 309 SSLGACAKLGLVTRGREVHGFILRRRIGLDPFNIFIHNALIDMYSKCGDMATAMLVFARM 368

Query: 227 SRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDD 284
           S     S + ++++    +G  + ++   KR+LD  + P       +L+  S A    D 
Sbjct: 369 SERDFIS-WNSMVTGFSHNGQGKQSLAMFKRMLDAEVQPTYVTFLAVLTACSHAGLVTDG 427

Query: 285 AGDIRTLMYN 294
              + ++ Y+
Sbjct: 428 RRILESMQYH 437



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 9/133 (6%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G+  HAL+ K   + +  + NRL+ +YA+  +   +   F  +  R+  S+N+LL     
Sbjct: 51  GRAAHALLLKTALNHHTLLSNRLIELYAMLNSPAASRTAFEDLPYRNAHSYNNLLA---- 106

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLV----VLSACCHAGFIDKGLQYFYLMRNDASLE 196
              SR +  L + +   +  P  +  +V    ++SA    G   + L+ F  +  D  L 
Sbjct: 107 -ALSRGSATLPDALHLLDAMPASSRNVVSYNTIISALARNGRQGEALRVFARLARDRCLG 165

Query: 197 PPRAEHYTAIVGL 209
           P  A    A+V +
Sbjct: 166 PEVALDRFAVVSV 178


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 105/281 (37%), Positives = 167/281 (59%), Gaps = 1/281 (0%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N +SW ++IA     G   +AL+ F EM+ AG+  +  TI  ++ A G I+    GK  H
Sbjct: 350 NVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAH 409

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
               + G  ++V+V + L+ MYA CG I  +   F  +  ++LV WN+++ G A HG ++
Sbjct: 410 CFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAK 469

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205
           EA+++F+ MQ++  KPD  +F  VLSAC  +G  ++G  YF  M +   +E  R EHY  
Sbjct: 470 EAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIE-ARVEHYAC 528

Query: 206 IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265
           +V LL RAG L +A + I  M  NP   V+ ALLS+C+VH N  +   +A+++ +L P++
Sbjct: 529 MVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSN 588

Query: 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           P  Y+LLSN+  +   W++   +R +M N+G+RK PG SW+
Sbjct: 589 PGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWI 629



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 88/173 (50%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V   V   N  S++ +I  F        AL  FS+M   G+  D   + S V A   +S 
Sbjct: 70  VLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSA 129

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K  +Q+H +    G+DS+ FVQ+ LV MY  C  I DA++VF  M E D+VSW++L+  
Sbjct: 130 LKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAA 189

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
            A  G   EA +LF +M  + ++P+  ++  +++   H+G   + +  F  M 
Sbjct: 190 YARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMH 242



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 35/183 (19%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N ISWN +IAGF + G   +A+  F +M   G + D  TI+S++ A+G +     G  +H
Sbjct: 214 NLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIH 273

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD------------------ 127
             + K G  S+  V + L+ MY  C   ++ ++VF  MD  D                  
Sbjct: 274 GYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVE 333

Query: 128 -----------------LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
                            +VSW S++  C+ +G   EA++LF +MQ   +KP+  T   +L
Sbjct: 334 SSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLL 393

Query: 171 SAC 173
            AC
Sbjct: 394 PAC 396



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 2/138 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      +  +  + T+N + WNA+IAG+   G  ++A++ F  M+++G   D  + 
Sbjct: 431 YAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISF 490

Query: 66  TSIVGAIGVISGFKEGK-QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           T ++ A       +EG    +++  K G ++ V     +V + +  G +  A  +   M 
Sbjct: 491 TCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMP 550

Query: 125 -ERDLVSWNSLLLGCAHH 141
              D   W +LL  C  H
Sbjct: 551 VNPDACVWGALLSSCRVH 568



 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 39/224 (17%)

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +   + +Q HA I K G  ++  +  +L+  YA      DA  V   + E ++ S+++L+
Sbjct: 27  ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLI 86

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
              +       A+  F QM    + PD       + AC  AG               ++L
Sbjct: 87  YAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKAC--AGL--------------SAL 130

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           +P R  H     G+   +GF  +++SF+ S       S+    +   Q        +R A
Sbjct: 131 KPARQVH-----GIASVSGF--DSDSFVQS-------SLVHMYIKCNQ--------IRDA 168

Query: 256 KRVLD-LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
            RV D ++  D   +  L        C D+A  + + M + G++
Sbjct: 169 HRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQ 212


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 106/287 (36%), Positives = 160/287 (55%), Gaps = 1/287 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++ +  ++ + WNA+I GF      ++AL  F EM+ + +  D  T+ + + A   +  
Sbjct: 344 LFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGA 403

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G  MH  + K     NV +   LV MYA CG I  A +VF  M  R+ ++W +++ G
Sbjct: 404 LDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICG 463

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG    A+  F +M    + PD  TF+ VLSACCH G +D+G  YFY M +   +  
Sbjct: 464 LALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGIS- 522

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P+ +HY+ +V LLGRAGFL EAE  I SM   P   V+ AL    ++HGN  +  R+A +
Sbjct: 523 PKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASK 582

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           +L+L P+D  IYVLL+N+    + W+ A  +R +M  RG+ K PG S
Sbjct: 583 LLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCS 629



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 125/278 (44%), Gaps = 40/278 (14%)

Query: 9   CDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           C   L  + ++     R+ +SWN+II G+   G  ++A   + +M +  +  D  T+  +
Sbjct: 203 CGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGV 262

Query: 69  VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC------------------ 110
           V A   +     G+++H  I ++G +  V + N L+ MY  C                  
Sbjct: 263 VSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTV 322

Query: 111 -------------GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157
                        G +  A ++F+ M E+D+V WN+L+ G      S+EA+ LF +MQ +
Sbjct: 323 VSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQAS 382

Query: 158 EIKPDGTTFLVVLSACCHAGFIDKGL-QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFL 216
            + PD  T +  LSAC   G +D G+  + Y+ +++ ++        TA+V +  + G +
Sbjct: 383 SVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALG---TALVDMYAKCGNI 439

Query: 217 NEAESFINSMSRNPGPS--VYKALLSACQVHGNREIAV 252
            +A      M   PG +   + A++    +HG    A+
Sbjct: 440 KKAIQVFEEM---PGRNSLTWTAIICGLALHGQPHAAI 474



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 2/163 (1%)

Query: 12  SLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFTITSIV 69
           +LD+   + ++    N  SWN  I G+    +   A+  +  M + G  I D +T   + 
Sbjct: 103 NLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLF 162

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
                 S      ++   + ++G+DS++FV N ++ +   CG +  A K+F     RDLV
Sbjct: 163 KVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLV 222

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           SWNS++ G    G + EA  L+ +M +  + PD  T + V+SA
Sbjct: 223 SWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSA 265



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 6/153 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +      V+  +  RN ++W AII G    G    A+  FSEM   G+  D  T 
Sbjct: 433 YAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITF 492

Query: 66  TSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A        +G+   + +  K G    +   + LV +    G + +A ++  SM 
Sbjct: 493 IGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMP 552

Query: 125 -ERDLVSWNSLLLGCAHHGY----SREAVQLFE 152
            E D V W +L  G   HG      R A +L E
Sbjct: 553 FEPDAVVWGALFFGSRIHGNVHMGERAASKLLE 585


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 104/288 (36%), Positives = 170/288 (59%), Gaps = 1/288 (0%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           +  +  R++ISW  +I G+   G   ++L+ F EM+ AG+  D FT+ S++ A   +   
Sbjct: 325 FDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSL 384

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           + G+ +   I K    ++V V N L+ MY  CG    A KVF  MD+RD  +W ++++G 
Sbjct: 385 EIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGL 444

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP 198
           A++G  +EA+++F QMQ   I+PD  T+L VLSAC H+G +D+  ++F  MR+D  +EP 
Sbjct: 445 ANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPS 504

Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258
              HY  +V +LGRAG + EA   +  M  NP   V+ ALL A ++H +  +A  +AK++
Sbjct: 505 LV-HYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKI 563

Query: 259 LDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           L+L P++ A+Y LL N+      W D  ++R  + +  I+K PG+S +
Sbjct: 564 LELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLI 611



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 1/158 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++  +   + + WN +I G+  +    + ++ +  M + G+  D  T   ++  +    
Sbjct: 89  KLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDG 148

Query: 77  G-FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           G    GK++H  + K G  SN++VQN LV MY++CG ++ A  VF    + D+ SWN ++
Sbjct: 149 GALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMI 208

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            G        E+++L  +M++  + P   T L+VLSAC
Sbjct: 209 SGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSAC 246



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 31/208 (14%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C      + V+      +  SWN +I+G+  +   E++++   EM +  +     T+
Sbjct: 180 YSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTL 239

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   +      K++H  + +   + ++ ++N LV  YA CG ++ A ++F SM  
Sbjct: 240 LLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKA 299

Query: 126 RDLVSWNSLLLGCAHH--------------------------GYSR-----EAVQLFEQM 154
           RD++SW S++ G                              GY R     E++++F +M
Sbjct: 300 RDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREM 359

Query: 155 QKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           Q   + PD  T + VL+AC H G ++ G
Sbjct: 360 QSAGMIPDEFTMVSVLTACAHLGSLEIG 387



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 58  IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA--ICGAIND 115
           I  DY    SI+G       FK   Q+H+     G   N   Q +L   +   + G ++ 
Sbjct: 30  ISNDYSRFISILGVCKTTDQFK---QLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSY 86

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
           A K+F  + E D+V WN+++ G +      E V+L+  M K  + PD  TF  +L+    
Sbjct: 87  AYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKR 146

Query: 176 AG 177
            G
Sbjct: 147 DG 148



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 16/173 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---DIDY 62
           Y +C  S   Q V+  +  R++ +W A++ G  N G G++A+K F +M+   I   DI Y
Sbjct: 413 YFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITY 472

Query: 63  FTITSIVGAIGVISG----FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
             + S     G++      F + +  H +      + ++     +V M    G + +A +
Sbjct: 473 LGVLSACNHSGMVDQARKFFAKMRSDHRI------EPSLVHYGCMVDMLGRAGLVKEAYE 526

Query: 119 VFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           +   M    + + W +LL     H  + E +      +  E++PD      +L
Sbjct: 527 ILRKMPMNPNSIVWGALLGASRLH--NDEPMAELAAKKILELEPDNGAVYALL 577


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 171/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D    +  +  ++ +S++AI++G    G+   AL  F  M+ +GID D  T+
Sbjct: 357 YAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTM 416

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   ++  + G   H  +   G+ ++  + N L+ MY+ CG I+ A +VF+ MD 
Sbjct: 417 LGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDR 476

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VSWN++++G   HG   EA+ LF  +    +KPD  TF+ +LS+C H+G + +G  +
Sbjct: 477 HDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLW 536

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D S+  PR EH   +V +LGRAG ++EA  FI +M   P   ++ ALLSAC++H
Sbjct: 537 FDAMSRDFSI-VPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIH 595

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+    +K++  L P     +VLLSN+  A   WDDA  IR    + G++K PG SW
Sbjct: 596 KNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSW 655

Query: 306 V 306
           +
Sbjct: 656 I 656



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 142/277 (51%), Gaps = 8/277 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFT 64
           Y++C   L  + ++  +  RN++SW+A+I G+      ++AL+ F +M  +  +D    T
Sbjct: 255 YAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVT 314

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + S++ A   ++    G+++H  I K+G   ++ + N L+ MYA CG I+DA + F  M+
Sbjct: 315 LGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMN 374

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL- 183
            +D VS+++++ GC  +G +  A+ +F  MQ + I PD TT L VL AC H   +  G  
Sbjct: 375 PKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFC 434

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            + YL+    + +        A++ +  + G ++ A    N M R+   S + A++    
Sbjct: 435 SHGYLIVRGFATDTLIC---NALIDMYSKCGKISFAREVFNRMDRHDIVS-WNAMIIGYG 490

Query: 244 VH--GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
           +H  G   + +      L L P+D     LLS+ S +
Sbjct: 491 IHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHS 527



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 141/270 (52%), Gaps = 9/270 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C   ++ Q ++SS+  R+ ++WNA+IAG    G  + A++   +M++ GI  +  TI
Sbjct: 154 YAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTI 213

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++  +G       GK +H    +  +D+ V V   L+ MYA C  +  A K+F  M  
Sbjct: 214 VGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGV 273

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           R+ VSW++++ G       +EA++LF+QM  K  + P   T   VL AC     + +G +
Sbjct: 274 RNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRK 333

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV-YKALLSAC 242
            + Y+++  + L+         ++ +  + G +++A  F + M  NP  SV + A++S C
Sbjct: 334 LHCYIIKLGSVLDILLG---NTLLSMYAKCGVIDDAIRFFDEM--NPKDSVSFSAIVSGC 388

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLL 272
             +GN  +A+ S  R++ L   DP +  +L
Sbjct: 389 VQNGNAAVAL-SIFRMMQLSGIDPDLTTML 417



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 94/177 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C+  +  + ++  +   + I WN II  +   G  + A+  +  M   G+  + +T 
Sbjct: 53  YLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTY 112

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   +   ++G ++H+     G +S+VFV   LV  YA CG + +A ++FSSM  
Sbjct: 113 PFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH 172

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           RD+V+WN+++ GC+ +G   +AVQL  QMQ+  I P+ +T + VL     A  +  G
Sbjct: 173 RDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG 229



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 98/205 (47%), Gaps = 9/205 (4%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             E K++H    K   +++  V ++L  +Y  C  +  A ++F  +    ++ WN ++  
Sbjct: 24  LTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRA 83

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G    A+ L+  M    ++P+  T+  VL AC     I+ G++    + + A +  
Sbjct: 84  YAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE----IHSHAKMFG 139

Query: 198 PRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
             ++ +  TA+V    + G L EA+   +SMS     + + A+++ C ++G  + AV+  
Sbjct: 140 LESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVA-WNAMIAGCSLYGLCDDAVQLI 198

Query: 256 KRVLD--LWPNDPAIYVLLSNVSKA 278
            ++ +  + PN   I  +L  V +A
Sbjct: 199 MQMQEEGICPNSSTIVGVLPTVGEA 223


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 172/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +CD       V+  +  +N ++WNA+I+G    G   +AL  F  M+  G+  D  T+
Sbjct: 258 YLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTL 317

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ +   +   + GK +HA + +    ++ FV N L+ MYA CG+I++A +VF SM  
Sbjct: 318 VGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKR 377

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+ S+ +++ G A HG +  A Q+F +M +  I+P+  TFL +L AC H G + +G +Y
Sbjct: 378 RDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKY 437

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ M +   L  P+AEHY  ++ LLGRAG + EAE  I+ M   P      ALL AC++H
Sbjct: 438 FFQMSDKYKLR-PQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIH 496

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           GN +I     +++ +L P++   Y+L++N+  +   W DA  IR  M N+ +RK PG S 
Sbjct: 497 GNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSL 556

Query: 306 V 306
           +
Sbjct: 557 I 557



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 133/272 (48%), Gaps = 10/272 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C S  D Q V+     R+ +SW  +I  F   G   +A++ F EM    +  D  T+
Sbjct: 156 YSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTL 215

Query: 66  TSIVGAIGVISGFKEGKQMHALI-FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A   +     G+++H+ I   I   ++VFV N L+ MY  C  +N A KVF  M 
Sbjct: 216 VVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMP 275

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +++V+WN+++ G A+ G  REA+  F  MQ   +KPD  T + VL++C + G ++ G  
Sbjct: 276 VKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKW 335

Query: 185 YFYLMRNDASLEPPRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
               MR +  L    A+ +   A++ +  + G ++EA     SM R    S Y A++   
Sbjct: 336 VHAYMRRNHIL----ADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYS-YTAMIFGL 390

Query: 243 QVHG--NREIAVRSAKRVLDLWPNDPAIYVLL 272
            +HG  N    V S    + + PN+     LL
Sbjct: 391 ALHGEANWAFQVFSEMFRVGIEPNEVTFLGLL 422



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 90/162 (55%), Gaps = 1/162 (0%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           NAII            ++  +EM   G++ D FTI  ++ A+ +I G +EG+Q+HA   K
Sbjct: 79  NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIK 138

Query: 91  IGYDS-NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
            G    NV+V N L+ +Y++CG+I+D  KVF     RDLVSW +L+      G    AV+
Sbjct: 139 TGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVE 198

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
            F +M    ++ DG T +VVLSAC + G ++ G +    +R+
Sbjct: 199 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRH 240


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 110/279 (39%), Positives = 163/279 (58%), Gaps = 1/279 (0%)

Query: 28   ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
            +SW ++I+GF       +    F EM   G      TI+S++ A   ++  + GK++H  
Sbjct: 1041 VSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGY 1100

Query: 88   IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
               IG + +V+V++ LV MYA CG I++A  +F  M ER+ V+WNSL+ G A+HGY  EA
Sbjct: 1101 AMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEA 1160

Query: 148  VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
            ++LF QM++++ K D  TF  VL+AC HAG ++ G   F  M+    +E PR EHY  +V
Sbjct: 1161 IELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIE-PRLEHYACMV 1219

Query: 208  GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267
             LLGRAG L+EA   I +M   P   V+ ALL AC+ HGN E+A  +A+ + +L P  P 
Sbjct: 1220 DLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPG 1279

Query: 268  IYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
              +LLSN+      W +A  ++ +M  R   K PG SW+
Sbjct: 1280 SSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWI 1318



 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 164/284 (57%), Gaps = 1/284 (0%)

Query: 23  RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGK 82
           R  + +SWNA+IAG+      E+A++ F  M +  +  + FT ++I  A           
Sbjct: 378 RAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTV 437

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           Q+H+ + K   +SN+ V + L+  Y  CG++ +A +VF+ + + D+VSWNS++   + +G
Sbjct: 438 QIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNG 497

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEH 202
              +A+ L  +M +   KP   TFL VLSAC H+G + +G ++F  M  D S++P    H
Sbjct: 498 DPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEET-H 556

Query: 203 YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLW 262
            + +V +LGRAG L  A  FI  ++  P  S+++ LL+AC+ + N ++A   A+++LDL 
Sbjct: 557 CSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLE 616

Query: 263 PNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           PND  +YV LSN+      W DA + R LM  + I K+PG SW+
Sbjct: 617 PNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWI 660



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 134/255 (52%), Gaps = 4/255 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        VY  + + +  + N +I+ +   G   QA + F ++   G   +++T 
Sbjct: 158 YAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTY 217

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++   G IS  +EGKQ+HA + K+ Y S   V N L+ +Y+ CG + +A  VF S+ +
Sbjct: 218 STMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQ 277

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-CHAGFIDKGLQ 184
           R+++SW + + G   HG  ++A++ F  M+++ I+P+  TF +VL++C C   FID  + 
Sbjct: 278 RNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMF 337

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +  +++   +         TAI+ +    G ++EAE     M R      + AL++   +
Sbjct: 338 HTQVIKKGMASGVFVG---TAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVL 394

Query: 245 HGNREIAVRSAKRVL 259
           +   E A+ +  R++
Sbjct: 395 NEKIEKAMEAFCRMV 409



 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 134/271 (49%), Gaps = 24/271 (8%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            Y+ C    + + ++  +   N   W  +       G  E+AL  FSEM++ G+  + F +
Sbjct: 848  YTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVL 907

Query: 66   TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             SI+ A G +S  + G+ MH +I K  ++S+ ++ + L++MY+ CG +  A +VF  + +
Sbjct: 908  PSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVD 967

Query: 126  RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL-- 183
            +DLV  N+++ G A HG+  EA+ L ++MQ+  +KP+  ++  +++     G  DK +  
Sbjct: 968  KDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVG--DKSMVS 1025

Query: 184  QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS--VYKALLSA 241
            + F LM  +  +EP      + I G +         ++F   + +   PS     +LL A
Sbjct: 1026 EVFRLMTANG-VEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPA 1084

Query: 242  C----------QVHG-------NREIAVRSA 255
            C          ++HG        +++ VRSA
Sbjct: 1085 CTNVANLRHGKEIHGYAMVIGVEKDVYVRSA 1115



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 10/224 (4%)

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F+  S  G  G +   + G++ H  + KIG  S+ FV   L+ MYA CG ++ A +V+  
Sbjct: 117 FSALSFCGREGCV---ELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDK 173

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M   D  + N L+   A +G+  +A Q+F Q+     +P+  T+  +L+ C     I +G
Sbjct: 174 MTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEG 233

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            Q + ++++     E        A++ L  + G + EAE    S+ R      + A ++ 
Sbjct: 234 KQLHAHVVKMQYLSETAVG---NALLTLYSKCGMMEEAEIVFESL-RQRNIISWTASING 289

Query: 242 CQVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWD 283
              HG+ + A++  S  R   + PN+    ++L++     D  D
Sbjct: 290 FYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFID 333



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G+ +HA +  IG     +   +L+  Y  CG +++A K+F  +   ++  W  L   CA 
Sbjct: 822 GRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACAR 881

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
            G+  EA+  F +MQK  ++P+      +L AC H
Sbjct: 882 RGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGH 916



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 81/165 (49%), Gaps = 2/165 (1%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            Y++C    + + ++  +  RN ++WN++I G+ N G   +A++ F++M ++   +D+ T 
Sbjct: 1120 YAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTF 1179

Query: 66   TSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            T+++ A       + G+ +   +  K   +  +     +V +    G +++A  +  +M 
Sbjct: 1180 TAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMP 1239

Query: 125  -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
             E D   W +LL  C +HG    A    E + + E +  G++ L+
Sbjct: 1240 VEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLL 1284



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 43/223 (19%)

Query: 3    ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
            I  YS+C        V+  +  ++ +  NA+++G+   G   +AL    +M+QAG+    
Sbjct: 946  IYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVK--- 1002

Query: 63   FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
                ++V    +I+GF +          +G  S V    RL+           AN V   
Sbjct: 1003 ---PNVVSWNTLIAGFSQ----------VGDKSMVSEVFRLM----------TANGV--- 1036

Query: 123  MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              E D+VSW S++ G   + ++ E    F++M      P   T   +L AC +   +  G
Sbjct: 1037 --EPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHG 1094

Query: 183  LQ-YFYLM----RNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220
             + + Y M      D  +        +A+V +  + G+++EA+
Sbjct: 1095 KEIHGYAMVIGVEKDVYVR-------SALVDMYAKCGYISEAK 1130


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 171/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      +  +  ++ +  ISW+++I G+   G   +A+  F  +++    ID F +
Sbjct: 257 YVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFAL 316

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+G     +  ++GKQM AL  K+       V N +V MY  CG +++A K F+ M  
Sbjct: 317 SSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQL 376

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D++SW  ++ G   HG  +++V++F +M +  I+PD   +L VLSAC H+G I +G + 
Sbjct: 377 KDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEEL 436

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  +     ++ PR EHY  +V LLGRAG L EA+  I++M   P   +++ LLS C+VH
Sbjct: 437 FSKLLETHGIK-PRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVH 495

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E+     K +L +   +PA YV++SN+      W++ G+ R L   +G++K+ G SW
Sbjct: 496 GDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSW 555

Query: 306 V 306
           V
Sbjct: 556 V 556



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 116/216 (53%), Gaps = 2/216 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C   L    V+ S+  RN +SW+A+++G    G  + +L  FSEM + GI  + FT 
Sbjct: 51  YCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTF 110

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++ + A G+++  ++G Q+H    KIG++  V V N LV MY+ CG IN+A KVF  + +
Sbjct: 111 STNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVD 170

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK--PDGTTFLVVLSACCHAGFIDKGL 183
           R L+SWN+++ G  H GY  +A+  F  MQ+  IK  PD  T   +L AC   G I  G 
Sbjct: 171 RSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGK 230

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
           Q    +       P  A    ++V L  + G+L  A
Sbjct: 231 QIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSA 266



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 4/142 (2%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           +G Q+H  + K G   N+   N L+ MY  C     A KVF SM ER++VSW++L+ G  
Sbjct: 24  QGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHV 83

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPP 198
            +G  + ++ LF +M +  I P+  TF   L AC     ++KGLQ + + ++    +   
Sbjct: 84  LNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEM--- 140

Query: 199 RAEHYTAIVGLLGRAGFLNEAE 220
             E   ++V +  + G +NEAE
Sbjct: 141 MVEVGNSLVDMYSKCGRINEAE 162


>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g29230-like [Glycine max]
          Length = 446

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 168/291 (57%), Gaps = 2/291 (0%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFTITSIVGAIG 73
           F  V+  +  RN  SWN +I G+   G  ++AL+CF  M   G+ + + +T+ +++ A  
Sbjct: 106 FVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACS 165

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +   + GK +H     IGY  N+FV N L+ MYA CG I  A  VF  +D +D+++WN+
Sbjct: 166 RLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNT 225

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++   A H ++ +A+ LFE M++   +PDG TF+ +LSAC H G +  G  +F  M +D 
Sbjct: 226 IINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDD- 284

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            L  P+ EHY  +V LLGRAG +N+A   +  M   P   ++ ALL AC+ + N E+A  
Sbjct: 285 YLIVPQIEHYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALLGACRXYKNVEMAEL 344

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           + +R+++L PN+P  +V+LSN+ K      D   ++  M + G RK PG S
Sbjct: 345 ALQRLIELEPNNPGNFVMLSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCS 395



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 13/172 (7%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   V++ +R +N  +W A++A          A + F    Q   D+  + +        
Sbjct: 12  DAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQC--DVVLWNV-------- 61

Query: 74  VISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
           ++SG+ E   M A   +F    D +V   N ++  YA  G +    KVF  M  R++ SW
Sbjct: 62  IVSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSW 121

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSACCHAGFIDKG 182
           N L+ G   +G  +EA++ F++M     + P+  T + VLSAC   G ++ G
Sbjct: 122 NGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIG 173



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 12/175 (6%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C       +V+  +  ++ I+WN II           AL  F  M++AG   D 
Sbjct: 196 IDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDG 255

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR-----LVFMYAICGAINDAN 117
            T   I+ A   +   + G     L F+   D  + V        +V +    G IN A 
Sbjct: 256 VTFVGILSACTHMGLVRNG----FLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAV 311

Query: 118 KVFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            +   M  E D+V W +LL  C  +     A    +++   E++P+     V+LS
Sbjct: 312 DIVRKMPMEPDVVIWAALLGACRXYKNVEMAELALQRL--IELEPNNPGNFVMLS 364


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 171/306 (55%), Gaps = 3/306 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C   +  + ++  + +R+ I+WNA I+ +   G  ++A+  F  M++ G+D + 
Sbjct: 261 ISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNK 320

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+T+++ A   I     GKQM       G   ++FV   L+ MYA CG++  A +VF+ 
Sbjct: 321 VTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFND 380

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFID 180
           M  ++  SWN+++   A HG ++EA+ LFE+M  +    +P+  TF+ +LSAC HAG +D
Sbjct: 381 MPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVD 440

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +G + F +M     L  P+ EHY+ +V LL RAG L EA   I  M   P      AL S
Sbjct: 441 EGYRLFDMMSTLFGL-VPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHS 499

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           ACQ   N +I  R  + +L+L P++   Y++ S + +  + WDDA  +R LM   G+ K 
Sbjct: 500 ACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVTKT 559

Query: 301 PGYSWV 306
           PG SW+
Sbjct: 560 PGCSWI 565



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 143/278 (51%), Gaps = 12/278 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDID 61
           +  Y RC  +   + V+  +  ++ +SWN++++G+  LG   +A++ F  +R+ +G + D
Sbjct: 159 VTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPD 218

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             ++ S++GA G +   + G+ +   + + G   N ++ + L+ MY+ CG +  + ++F 
Sbjct: 219 EMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFD 278

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M  RD ++WN+ +   A +G + EA+ LF  M++  + P+  T   VLSAC   G +D 
Sbjct: 279 GMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDL 338

Query: 182 GLQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           G Q    M   A+    + + +  TA++ +  + G L  A+   N M R    S + A++
Sbjct: 339 GKQ----MDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDAS-WNAMI 393

Query: 240 SACQVHGNREIAVRSAKRVLD----LWPNDPAIYVLLS 273
           SA   HG  + A+   +R+ D      PND     LLS
Sbjct: 394 SALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLS 431



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 1/138 (0%)

Query: 46  ALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105
            L  + +M+   I  + FT   +  A   +   +  +  H  +FK+G D++    N +V 
Sbjct: 101 TLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVT 160

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGT 164
           MY  CG    A KVF  + E+DLVSWNSLL G A  G++REAV++F ++ +++  +PD  
Sbjct: 161 MYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEM 220

Query: 165 TFLVVLSACCHAGFIDKG 182
           + + VL AC   G ++ G
Sbjct: 221 SLVSVLGACGELGDLELG 238


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C  +   + V+  +  +N +SWN++I+G    G  +++L  F +M++ G+  D  T+
Sbjct: 272 YLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTL 331

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ +   +   + GK +HA + +    ++ F+ N LV MYA CG+I+ A  VF +M+ 
Sbjct: 332 VAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNR 391

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+ S+ ++++G A HG   +A+ LF +M K  I+PD  TF+ VL+AC H G +++G +Y
Sbjct: 392 KDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKY 451

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M    +L  P+ EHY  +V LLGRAG +NEAE FI +M   P   V  ALL AC++H
Sbjct: 452 FEDMSTIYNLR-PQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIH 510

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G  E+     K++  + P     YVL+SN+  + + W DA  +R  M  R + K PG S 
Sbjct: 511 GKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSS 570

Query: 306 V 306
           +
Sbjct: 571 I 571



 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 135/267 (50%), Gaps = 17/267 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ CD     + V+ +   R+ +SW  +I G+  +G   + +  F EM    +  D  T+
Sbjct: 170 YAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTL 229

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ +   +   + G+++H  I +    + +VFV N LV MY  CG  N A KVF  M 
Sbjct: 230 VIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMP 289

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL- 183
            +++VSWNS++ G A  G  +E++ +F +MQ+  +KPD  T + VL++C + G ++ G  
Sbjct: 290 VKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKW 349

Query: 184 QYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            + YL RN       RA+ +   A+V +  + G +++A     +M+R    S Y A++  
Sbjct: 350 VHAYLDRNQI-----RADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYS-YTAMIVG 403

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAI 268
             +HG          + LDL+   P +
Sbjct: 404 LAMHGQ-------GGKALDLFSEMPKM 423



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 100/177 (56%), Gaps = 2/177 (1%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGE-QALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++ + +RT N   +NAII G     +   + L  + +M   GI  D +TI  ++ A    
Sbjct: 79  SLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAES 138

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              +EG+++H    K+G  S+V+V N L+ MYA+C  I  A KVF +  +RDLVSW +++
Sbjct: 139 RAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMI 198

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN 191
            G    G++RE V LF +M    ++ DG T ++VLS+C   G +  G + + Y++RN
Sbjct: 199 QGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRN 255


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 109/280 (38%), Positives = 160/280 (57%), Gaps = 1/280 (0%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           ++I+W+ +I G       E+A++ F +M+  G   D  TI SI+ A  +    + GK++H
Sbjct: 544 DEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIH 603

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
             +F+   D ++   N LV MYA CG ++ +  VF  M  +D+ SWN+++     HG  +
Sbjct: 604 CYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGK 663

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205
           EA+ LFE+M  + +KPD  TF  VLSAC H+  +++G+Q F  M  D  +E P AEHYT 
Sbjct: 664 EALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVE-PEAEHYTC 722

Query: 206 IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265
           +V +  RAG L EA  FI  M   P    +KA L+ C+V+ N E+A  SAK++ ++ PN 
Sbjct: 723 VVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNG 782

Query: 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            A YV L N+      W +A  IR LM  RGI K PG SW
Sbjct: 783 SANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSW 822



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 87/168 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C    + Q V+  +  RN I+WN++ + + N G  ++ L  F EM   G+  D   +
Sbjct: 287 YESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAM 346

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+ A   +   K GK +H    K G   +VFV   LV +YA C  + +A  VF  M  
Sbjct: 347 SSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPH 406

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           R++V+WNSL     + G+ ++ + +F +M    +KPD  T L +L AC
Sbjct: 407 RNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHAC 454



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 87/168 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    + Q V+  +  R+ ++WN++ + + N G  ++ L  F EM   G+  D  T+
Sbjct: 186 YAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTV 245

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + I+ A   +   K GK +H    K G   NVFV N LV +Y  C  + +A  VF  M  
Sbjct: 246 SCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPH 305

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           R++++WNSL     + G+ ++ + +F +M    +KPD      +L AC
Sbjct: 306 RNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPAC 353



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 94/185 (50%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C    + Q V+  +  RN ++WN++ + + N G  ++ L  F EM   G+  D  T+
Sbjct: 388 YANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTM 447

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A   +   K GK +H    + G   +VFV N L+ +YA C  + +A  VF  +  
Sbjct: 448 LSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPH 507

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++ SWN +L     +    + + +F QM + E+K D  T+ VV+  C     I++ ++ 
Sbjct: 508 REVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEI 567

Query: 186 FYLMR 190
           F  M+
Sbjct: 568 FRKMQ 572



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 88/171 (51%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C      + V+  +  R+ ++WN++ A + N G  +Q L  F +M    +  + 
Sbjct: 82  IHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANP 141

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T++SI+     +   K GK++H  + + G   +VFV +  V  YA C  + +A  VF  
Sbjct: 142 LTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDL 201

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           M  RD+V+WNSL     + G+ ++ + +F +M    +KPD  T   +LSAC
Sbjct: 202 MPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSAC 252



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 61/133 (45%)

Query: 41  GSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQ 100
           G   +A+K ++  R  GI  D     ++  A        + KQ H    + G  S+V + 
Sbjct: 19  GLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIG 78

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
           N  +  Y  C  +  A +VF  +  RD+V+WNSL     + G+ ++ + +F +M   ++K
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK 138

Query: 161 PDGTTFLVVLSAC 173
            +  T   +L  C
Sbjct: 139 ANPLTVSSILPGC 151



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 10/170 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      +NV+  +  ++  SWN +I      G+G++AL  F +M  + +  D  T 
Sbjct: 625 YAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATF 684

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR----LVFMYAICGAINDANKVFS 121
           T ++ A       +EG Q   +   +  D  V  +      +V +Y+  G + +A     
Sbjct: 685 TCVLSACSHSMLVEEGVQ---IFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQ 741

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
            M  E   ++W + L GC    Y    +      +  EI P+G+   V L
Sbjct: 742 RMPMEPTAIAWKAFLAGC--RVYKNVELAKISAKKLFEIDPNGSANYVTL 789


>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
 gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
          Length = 603

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 110/296 (37%), Positives = 166/296 (56%), Gaps = 8/296 (2%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +  +++++W A+I+G    G  + AL+ F  M   G+    F + S++GA   + 
Sbjct: 263 QVFDMMPDKDRVAWTALISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVLGACAKLG 322

Query: 77  GFKEGKQMHALIFK--IGYDS-NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
               GK++H  I +  IG D  N+F+ N LV MY+ CG +  A  VF  M ERD +SWNS
Sbjct: 323 LVTRGKELHCSILRRSIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFHRMPERDFISWNS 382

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G +H+G  ++++ +FE+M    ++P   TFL VL+AC H+G +  G      M  D 
Sbjct: 383 MVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLILESM-EDH 441

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV---YKALLSACQVHGNREI 250
            +E PRAEHY A +  LGR   L EA  FI  +    GP     + ALL AC++HGN E+
Sbjct: 442 GVE-PRAEHYAAFIDALGRNRQLEEAIEFIKDLPSRIGPGTAGSWGALLGACRLHGNIEL 500

Query: 251 AVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           A   A+ +  L P +   YV+LSN+  A   WDDA  +R LM  +G++K   YSW+
Sbjct: 501 AEEVAEFLFKLEPGNSGRYVMLSNIYAAAGQWDDARRVRGLMKEKGLKKDQAYSWI 556



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/258 (20%), Positives = 108/258 (41%), Gaps = 39/258 (15%)

Query: 8   RCDSSLDFQNVYSSVRT--RNQISWNAIIAGFCNLGSGEQALKCFSEMRQ-----AGIDI 60
           R D+  D  +++ ++    RN +S+N +++   + G   +AL+  + + +      G+ +
Sbjct: 115 RPDTFPDALHLFDTMPADARNLVSYNTLMSSLVHHGRQAEALRVVARLARDRFLGPGLAM 174

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D FT+ S+  A   I   +  ++MH  +   G +  V + N +V  Y+    + +A  +F
Sbjct: 175 DRFTVVSVATACAGIRAARPLREMHGAVVVSGMELTVIMANAMVNAYSKAWRVEEARHLF 234

Query: 121 SSMDERDLVSWNS-------------------------------LLLGCAHHGYSREAVQ 149
             +  RD V+W S                               L+ G   +G    A++
Sbjct: 235 DQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDTALE 294

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVG 208
           LFE+M    + P     + VL AC   G + +G + +  ++R     +P     + A+V 
Sbjct: 295 LFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKELHCSILRRSIGSDPFNIFIHNALVD 354

Query: 209 LLGRAGFLNEAESFINSM 226
           +  + G +  A +  + M
Sbjct: 355 MYSKCGDMTAAMAVFHRM 372



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 18/176 (10%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        V+  +  R+ ISWN+++ GF + G G+Q+L  F EM  AG+   + T 
Sbjct: 356 YSKCGDMTAAMAVFHRMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTF 415

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD- 124
            +++ A         G+    LI +   D    V+ R     A   A+    ++  +++ 
Sbjct: 416 LAVLTACSHSGLVSNGR----LILESMEDHG--VEPRAEHYAAFIDALGRNRQLEEAIEF 469

Query: 125 ERDLV---------SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            +DL          SW +LL  C  HG    A ++ E + K E  P  +   V+LS
Sbjct: 470 IKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFKLE--PGNSGRYVMLS 523



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 90/244 (36%), Gaps = 68/244 (27%)

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMY-------AICGAIND-------- 115
           AI      + G+ +HA + K    S+  + NRLV +Y       A   A +D        
Sbjct: 45  AISTGDVLRLGRAVHARLVKTALTSHTLLSNRLVALYSRLPSSAAAVAAFDDLPHKNAHS 104

Query: 116 -----------------ANKVFSSM--DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
                            A  +F +M  D R+LVS+N+L+    HHG   EA+++  ++ +
Sbjct: 105 YNTLLAALLRRPDTFPDALHLFDTMPADARNLVSYNTLMSSLVHHGRQAEALRVVARLAR 164

Query: 157 TE-----IKPDGTTFLVVLSACC-----------HAGFIDKGLQYFYLMRNDASLEPPRA 200
                  +  D  T + V +AC            H   +  G++   +M N         
Sbjct: 165 DRFLGPGLAMDRFTVVSVATACAGIRAARPLREMHGAVVVSGMELTVIMAN--------- 215

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260
               A+V    +A  + EA    + +S     +    +   CQV    E     A +V D
Sbjct: 216 ----AMVNAYSKAWRVEEARHLFDQISIRDNVTWTSMISGYCQVKKLDE-----ALQVFD 266

Query: 261 LWPN 264
           + P+
Sbjct: 267 MMPD 270


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 104/288 (36%), Positives = 170/288 (59%), Gaps = 1/288 (0%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           +  +  R++ISW  +I G+   G   ++L+ F EM+ AG+  D FT+ S++ A   +   
Sbjct: 325 FDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSL 384

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           + G+ +   I K    ++V V N L+ MY  CG    A KVF  MD+RD  +W ++++G 
Sbjct: 385 EIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGL 444

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP 198
           A++G  +EA+++F QMQ   I+PD  T+L VLSAC H+G +D+  ++F  MR+D  +EP 
Sbjct: 445 ANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPS 504

Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258
              HY  +V +LGRAG + EA   +  M  NP   V+ ALL A ++H +  +A  +AK++
Sbjct: 505 LV-HYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKI 563

Query: 259 LDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           L+L P++ A+Y LL N+      W D  ++R  + +  I+K PG+S +
Sbjct: 564 LELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLI 611



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 1/158 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++  +   + + WN +I G+  +    + ++ +  M + G+  D  T   ++  +    
Sbjct: 89  KLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDG 148

Query: 77  G-FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           G    GK++H  + K G  SN++VQN LV MY++CG ++ A  VF    + D+ SWN ++
Sbjct: 149 GALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMI 208

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            G        E+++L  +M++  + P   T L+VLSAC
Sbjct: 209 SGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSAC 246



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 31/208 (14%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C      + V+      +  SWN +I+G+  +   E++++   EM +  +     T+
Sbjct: 180 YSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTL 239

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   +      K++H  + +   + ++ ++N LV  YA CG ++ A ++F SM  
Sbjct: 240 LLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKA 299

Query: 126 RDLVSWNSLLLGCAHH--------------------------GYSR-----EAVQLFEQM 154
           RD++SW S++ G                              GY R     E++++F +M
Sbjct: 300 RDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREM 359

Query: 155 QKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           Q   + PD  T + VL+AC H G ++ G
Sbjct: 360 QSAGMIPDEFTMVSVLTACAHLGSLEIG 387



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 58  IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA--ICGAIND 115
           I  DY    SI+G       FK   Q+H+     G   N   Q +L   +   + G ++ 
Sbjct: 30  ISNDYSRFISILGVCKTTDQFK---QLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSY 86

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
           A K+F  + E D+V WN+++ G +      E V+L+  M K  + PD  TF  +L+    
Sbjct: 87  AYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKR 146

Query: 176 AG 177
            G
Sbjct: 147 DG 148



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 16/173 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---DIDY 62
           Y +C  S   Q V+  +  R++ +W A++ G  N G G++A+K F +M+   I   DI Y
Sbjct: 413 YFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITY 472

Query: 63  FTITSIVGAIGVISG----FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
             + S     G++      F + +  H +      + ++     +V M    G + +A +
Sbjct: 473 LGVLSACNHSGMVDQARKFFAKMRSDHRI------EPSLVHYGCMVDMLGRAGLVKEAYE 526

Query: 119 VFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           +   M    + + W +LL     H  + E +      +  E++PD      +L
Sbjct: 527 ILRKMPMNPNSIVWGALLGASRLH--NDEPMAELAAKKILELEPDNGAVYALL 577


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 181/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC       +V+  ++ ++ ++WN+I+         E+ LK FS + ++   +D  ++
Sbjct: 400 YARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISL 459

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-D 124
            +++ A   +  F+  KQ+HA  FK G   +  + N L+  YA CG+++DA ++F  M +
Sbjct: 460 NNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGN 519

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD+ SW+SL++G A  GY++EA+ LF +M+   I+P+  TF+ VL+AC   GF+++G  
Sbjct: 520 NRDVFSWSSLIVGYAQFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCY 579

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           Y+ +M  +  + P R EH + IV LL RAG L EA +FI+ M   P   ++K LL+A ++
Sbjct: 580 YYSIMEPEYGIVPTR-EHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKM 638

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H + E+  R+A+ +L++ P+  A YVLL N+  A+  W++   ++  M   G++K PG S
Sbjct: 639 HNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKS 698

Query: 305 WV 306
           WV
Sbjct: 699 WV 700



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 87/159 (54%)

Query: 22  VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG 81
           +   + +SWN+I+  +   G   +AL  FSEMR +G+  D  T+  ++ A         G
Sbjct: 315 IEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHG 374

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           + +H+ + K+G D +V V N L+ MYA C  ++ A  VF  + ++D+V+WNS+L  CA H
Sbjct: 375 RLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQH 434

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
            +  E ++LF  + K+E   D  +   VLSA    G+ +
Sbjct: 435 NHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFE 473



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 1/183 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC +    + V+  +  RN +SW ++IA     G    AL  FS M ++G   D 
Sbjct: 93  ITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQ 152

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F + S V A   +     G+Q+HA   K    S++ VQN LV MY+  G ++D   +F  
Sbjct: 153 FALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFER 212

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDK 181
           + ++DL+SW S++ G A  G+  EA+Q+F +M  +    P+   F     AC   G  + 
Sbjct: 213 IKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSWEY 272

Query: 182 GLQ 184
           G Q
Sbjct: 273 GEQ 275



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 14/242 (5%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-IDYFTITSIVGAIGVIS 76
           ++  ++ ++ ISW +IIAGF   G   +AL+ F +M   G    + F   S   A G + 
Sbjct: 209 LFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVG 268

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            ++ G+Q+H L  K   D +++V   L  MYA    ++ A   F  ++  DLVSWNS++ 
Sbjct: 269 SWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVN 328

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQYFYLMR----N 191
             +  G   EA+ LF +M+ + ++PDG T   +L AC     +  G L + YL++     
Sbjct: 329 AYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDG 388

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
           D S+         +++ +  R   L+ A    + + ++     + ++L+AC  H + E  
Sbjct: 389 DVSV-------CNSLLSMYARCSDLSSAMDVFHEI-KDQDVVTWNSILTACAQHNHPEEV 440

Query: 252 VR 253
           ++
Sbjct: 441 LK 442



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 7/126 (5%)

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDS-------NVFVQNRLVFMYAICGAINDANK 118
            ++V A   +    +G+++H  +      S       N  + N L+ MY  C A + A +
Sbjct: 48  AALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQ 107

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           VF  M  R+ VSW S++     +G + +A+ LF  M ++    D       + AC   G 
Sbjct: 108 VFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGD 167

Query: 179 IDKGLQ 184
           +  G Q
Sbjct: 168 VGTGRQ 173


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 176/302 (58%), Gaps = 4/302 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++ ++  + + V+  +  R+ +S+ AI++G+  LG  E+AL  F  +   G+  +  T 
Sbjct: 161 YAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALDLFRLLYNEGMQCNQVTF 220

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++ A+  +S    GKQ+H LI +      + +QN L+ MY+ CG +  + +VF SM E
Sbjct: 221 TALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRRVFDSMPE 280

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R +VSWN++L+G   HG + E VQLF  M   E+KPD  T L VLS   H G +D+GL  
Sbjct: 281 RSVVSWNAMLMGYGRHGLAHEVVQLFRSMCD-EVKPDSVTLLAVLSGYSHGGLVDEGLDM 339

Query: 186 F-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           F ++++  ++L     EHY  ++ LLGR+G L +A + I  M   P  +++ +LL AC+V
Sbjct: 340 FDHIVKEQSTL--LNTEHYGCVIDLLGRSGQLQKALNLIEKMPFQPTRAIWGSLLGACRV 397

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N  +    A+++LD+ P +   YV+LSN+  A   W D   +R LM  + + K+PG S
Sbjct: 398 HTNVHVGEFVAQKLLDIEPENAGNYVILSNIYAAAGMWKDVFRVRKLMLKKTVIKEPGRS 457

Query: 305 WV 306
           W+
Sbjct: 458 WM 459



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 128/278 (46%), Gaps = 30/278 (10%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ Y+RC +  D +NV   +  RN +SW A+I+G+      +QA + F  M +AGI    
Sbjct: 77  VIMYARCGALEDARNVLDGMPERNVVSWTAMISGYSQNERPDQAWELFIMMLRAGI---- 132

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
                            + KQ+HA   K  ++ ++FV + L+ MYA    I +A +VF  
Sbjct: 133 ----------------HQVKQVHAFAVKTNFELHMFVGSSLLDMYAKSENIQEARRVFDM 176

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  RD+VS+ ++L G    G   EA+ LF  +    ++ +  TF  +L+A      +D G
Sbjct: 177 LPARDVVSYTAILSGYTQLGLDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYG 236

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALL 239
            Q +  ++R +    P       +++ +  + G L  +    +SM   P  SV  + A+L
Sbjct: 237 KQVHGLILRREL---PFFMALQNSLIDMYSKCGKLLYSRRVFDSM---PERSVVSWNAML 290

Query: 240 SACQVHGNREIAVRSAKRVLD-LWPNDPAIYVLLSNVS 276
                HG     V+  + + D + P+   +  +LS  S
Sbjct: 291 MGYGRHGLAHEVVQLFRSMCDEVKPDSVTLLAVLSGYS 328



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 49/83 (59%)

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             +EG+Q+HA +   GY   +++  RLV MYA CGA+ DA  V   M ER++VSW +++ 
Sbjct: 50  ALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERNVVSWTAMIS 109

Query: 137 GCAHHGYSREAVQLFEQMQKTEI 159
           G + +    +A +LF  M +  I
Sbjct: 110 GYSQNERPDQAWELFIMMLRAGI 132


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 180/305 (59%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           + +YS+  ++ +  +++  +  ++ ++W+A+++ +   G  + A   F +M   G+  + 
Sbjct: 442 LASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNE 501

Query: 63  FTITSIVGAIGV-ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           FTI+S + A     +G  +G+Q HA+  K  Y   + V + LV MYA  G+I+ A  VF 
Sbjct: 502 FTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFE 561

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
              +RDLVSWNS++ G A HGYS+EA+  F QM+   I+ DG TFL V+  C HAG + +
Sbjct: 562 RQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKE 621

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G QYF  M  D ++ P   EHY+ +V L  RAG L+E  + I  M    G  V++ LL A
Sbjct: 622 GQQYFDSMVMDHNISPT-MEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGA 680

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+VH N E+   +A+++L L P+D A YVLLSN+  A   W +  ++R LM ++ ++K+ 
Sbjct: 681 CRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEA 740

Query: 302 GYSWV 306
           G SW+
Sbjct: 741 GCSWI 745



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 125/267 (46%), Gaps = 14/267 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D + V+  +  RN ++W +++ G+    +    +  F  MR  G+  + FT 
Sbjct: 145 YMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTF 204

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A+        G+++HA   K G  S VFV N L+ MY+ CG + +A  VF  M+ 
Sbjct: 205 TSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMET 264

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWN+L+ G   + +  EA+QLF   + +  K   +T+  V+  C +       L+ 
Sbjct: 265 RDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCAN-------LKQ 317

Query: 186 FYLMRNDASLEPPRAEH-----YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
             L R   S       H      TAI+    + G L++A +    M  +     + A++ 
Sbjct: 318 LALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIG 377

Query: 241 ACQVHGNREIAVR--SAKRVLDLWPND 265
            C  + +  +A    S  R  ++ PN+
Sbjct: 378 GCIQNADIPLAAALFSRMREDNVKPNE 404



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 3/143 (2%)

Query: 41  GSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYD-SNVFV 99
           G GE AL  F ++ + G  +    ++ ++   G+I     G+Q+H L  K G+D + V V
Sbjct: 80  GRGE-ALDHFVDVHRCG-RVQGAAVSRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGV 137

Query: 100 QNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159
              LV MY  CG + D   VF  M +R++V+W SLL G        + + LF +M+   +
Sbjct: 138 GTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGV 197

Query: 160 KPDGTTFLVVLSACCHAGFIDKG 182
            P+  TF  VLSA    G +D G
Sbjct: 198 WPNPFTFTSVLSAVASQGAVDLG 220



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 8/183 (4%)

Query: 6   YSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS+C    D  N++  +  ++N +SW A+I G         A   FS MR+  +  + FT
Sbjct: 347 YSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFT 406

Query: 65  ITSIVGA-IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            ++++ A I ++       Q+HA I K  Y     V   L+  Y+  G   +A  +F  +
Sbjct: 407 YSTVLTASIPILL-----PQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMI 461

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH-AGFIDKG 182
           D +D+V+W+++L   +  G    A  +F +M    +KP+  T    + AC      ID+G
Sbjct: 462 DHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQG 521

Query: 183 LQY 185
            Q+
Sbjct: 522 RQF 524


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 111/306 (36%), Positives = 172/306 (56%), Gaps = 2/306 (0%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           L  +T +  D+ L  + ++  +  ++ ISWN +IA + N    ++A+  +S+M   G++ 
Sbjct: 228 LPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEP 287

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D  +I S++ A G +S    G+++H    +     N+ ++N L+ MYA CG + DA  VF
Sbjct: 288 DVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVF 347

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           + M  RD+VSW S++      G  R+AV +F +M+ + + PD   F+ VL+AC HAG +D
Sbjct: 348 NQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLD 407

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
            G  YF LM        P+ EH+  +V LLGRAG ++EA  FI  M   P   V+  LLS
Sbjct: 408 DGRYYFNLMAECGI--TPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLS 465

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           AC+V+ N  I + +A ++L L P     YVLLSN+      W D   IR++M  +GI+K 
Sbjct: 466 ACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKL 525

Query: 301 PGYSWV 306
           PG S V
Sbjct: 526 PGISNV 531



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 84/168 (50%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y+ C      ++++  +  +N + +N +I  + N    + AL  +  M   G   D +T
Sbjct: 63  VYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYT 122

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
              ++ A         G Q+H  + KIG D N++V N L+ MY  C ++ +A +V   + 
Sbjct: 123 YPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIP 182

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            RD+VSWNS++   A +G   +A++L  +M+   +KP+  T   +L A
Sbjct: 183 CRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPA 230



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 122/301 (40%), Gaps = 41/301 (13%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S  + Q V   +  R+ +SWN++++ +   G    AL+   EM    +  + 
Sbjct: 162 IAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPND 221

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ A+   +                 D+ ++V+                 ++F  
Sbjct: 222 CTMASLLPAVTNTTS----------------DNVLYVK-----------------EMFLK 248

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ++ ++SWN ++    ++   +EAV L+ QM+   ++PD  + + VL A      +  G
Sbjct: 249 LTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLG 308

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA- 241
            +          L  P      A++ +  + G L +A +  N M      S + +++SA 
Sbjct: 309 RRVHKFAERKKLL--PNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVS-WTSIISAY 365

Query: 242 --CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
             C   G   +AV +  R   L P+  A   +L+  S A    DD      LM   GI  
Sbjct: 366 GKCG-QGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHA-GLLDDGRYYFNLMAECGITP 423

Query: 300 K 300
           K
Sbjct: 424 K 424



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 91/202 (45%), Gaps = 8/202 (3%)

Query: 82  KQMHALIFKIGYDS-NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           K++H  +    Y   N  V  +L+ +YA CG    A  +F  + ++++V +N ++    +
Sbjct: 38  KKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVN 97

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPR 199
           +   ++A+ +++ M      PD  T+  VL A   +  +  GLQ +  +++    L    
Sbjct: 98  NHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYV 157

Query: 200 AEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG--NREIAVRSAKR 257
                 ++ + G+   L EA+  ++ +      S + +++S    +G  N  + +     
Sbjct: 158 G---NGLIAMYGKCKSLKEAQQVLDEIPCRDVVS-WNSMVSVYAQNGRFNDALELCREME 213

Query: 258 VLDLWPNDPAIYVLLSNVSKAT 279
            L+L PND  +  LL  V+  T
Sbjct: 214 ALNLKPNDCTMASLLPAVTNTT 235


>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 611

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 174/303 (57%), Gaps = 4/303 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    + +  +  +  ++ I+WN +I+      S E AL  F      G   + +T 
Sbjct: 258 YCRCGYLSEAKRYFHEMEDKDLITWNTLISELERSDSSE-ALLMFQRFESQGFVPNCYTF 316

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS+V A   I+    G+Q+H  I++ G++ NV + N L+ MYA CG I D+ +VF  ++E
Sbjct: 317 TSLVAACANIAALNCGQQLHGRIYRRGFNKNVELANALIDMYAKCGDIPDSERVFGEIEE 376

Query: 126 R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           R +LVSW S+++G   HGY  EAV+LF++M  + I+PD   F+ VLSAC HAG ++KGL+
Sbjct: 377 RRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLK 436

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF +M ++  + P R + Y  +V LLGRAG + EA   +  M   P  S + A+L AC+ 
Sbjct: 437 YFNVMESEYGINPDR-DIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKA 495

Query: 245 HGNREIAVR-SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
           H +  +  R +AK+V++L P     YV+LS +  A   W +   +R +M   G +K+ G 
Sbjct: 496 HKHTGLISRLAAKKVMELKPRMVGTYVMLSYIYAAEGKWVEFARVRKMMRMMGNKKEAGM 555

Query: 304 SWV 306
           SW+
Sbjct: 556 SWI 558



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 98/180 (54%), Gaps = 2/180 (1%)

Query: 6   YSRCDSSLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y+ C  +++    ++  ++ +N ++W  +I GF +LG G   LK + +M     D+  + 
Sbjct: 156 YATCSVTMEAAFLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYC 215

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           IT  V A   I     GKQ+HA + K G+ SN+ V N ++  Y  CG +++A + F  M+
Sbjct: 216 ITIAVRASASIDSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEME 275

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++DL++WN+L+        S EA+ +F++ +     P+  TF  +++AC +   ++ G Q
Sbjct: 276 DKDLITWNTLISELERSD-SSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQ 334



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 107/223 (47%), Gaps = 25/223 (11%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++++  +  R+ ++W A+I G+ +      A +CF EM + G   + FT++S++ +   +
Sbjct: 65  RSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFHEMFKQGRSPNEFTLSSVLKSCRNM 124

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN-KVFSSMDERDLVSWNSL 134
                G  +H ++ K+G + +++V N L+ MYA C    +A   +F  +  ++ V+W +L
Sbjct: 125 KVLAYGALVHGVVVKLGMEGSLYVDNALMNMYATCSVTMEAAFLIFRDIKVKNDVTWTTL 184

Query: 135 LLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSAC---------CHAGFIDKGL 183
           + G  H G     +++++QM  +  ++ P   T  V  SA           HA  + +G 
Sbjct: 185 ITGFTHLGDGIGGLKMYKQMLLENADVTPYCITIAVRASASIDSVTTGKQIHASVVKRGF 244

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           Q    + N             +I+    R G+L+EA+ + + M
Sbjct: 245 QSNLPVMN-------------SILDFYCRCGYLSEAKRYFHEM 274



 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 37/71 (52%)

Query: 103 LVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
           L+  Y   G + +A  +F  M ERD+V+W +++ G A   Y+  A + F +M K    P+
Sbjct: 51  LIVSYFEKGLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFHEMFKQGRSPN 110

Query: 163 GTTFLVVLSAC 173
             T   VL +C
Sbjct: 111 EFTLSSVLKSC 121


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C  +   + V+  +  +N +SWN++I+G    G  +++L  F +M++ G+  D  T+
Sbjct: 250 YLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTL 309

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ +   +   + GK +HA + +    ++ F+ N LV MYA CG+I+ A  VF +M+ 
Sbjct: 310 VAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNR 369

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+ S+ ++++G A HG   +A+ LF +M K  I+PD  TF+ VL+AC H G +++G +Y
Sbjct: 370 KDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKY 429

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M    +L  P+ EHY  +V LLGRAG +NEAE FI +M   P   V  ALL AC++H
Sbjct: 430 FEDMSTIYNLR-PQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIH 488

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G  E+     K++  + P     YVL+SN+  + + W DA  +R  M  R + K PG S 
Sbjct: 489 GKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSS 548

Query: 306 V 306
           +
Sbjct: 549 I 549



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 122/266 (45%), Gaps = 52/266 (19%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ CD     + V+ +   R+ +SW  +I G+  +G   + +  +  +R + +++D    
Sbjct: 185 YAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLYI-IRNSNVNLD---- 239

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
                                          VFV N LV MY  CG  N A KVF  M  
Sbjct: 240 -------------------------------VFVGNALVDMYLKCGDANFARKVFQEMPV 268

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL-Q 184
           +++VSWNS++ G A  G  +E++ +F +MQ+  +KPD  T + VL++C + G ++ G   
Sbjct: 269 KNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWV 328

Query: 185 YFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           + YL RN       RA+ +   A+V +  + G +++A     +M+R    S Y A++   
Sbjct: 329 HAYLDRNQI-----RADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYS-YTAMIVGL 382

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAI 268
            +HG          + LDL+   P +
Sbjct: 383 AMHGQ-------GGKALDLFSEMPKM 401



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 22/255 (8%)

Query: 9   CDSSLDFQNVYS-----SVRTRNQISWNAIIAGFCNLGSGE-QALKCFSEMRQAGIDIDY 62
           C  SL     Y+      +RT N   +NAII G     +   + L  + +M   GI  D 
Sbjct: 81  CAQSLPIDPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDN 140

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +TI  ++ A       +EG+++H    K+G  S+V+V N L+ MYA+C  I  A KVF +
Sbjct: 141 YTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDT 200

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD---GTTFLVVLSACCHAGFI 179
             +RDLVSW +++ G    G++RE V L+  ++ + +  D   G   + +   C  A F 
Sbjct: 201 SPQRDLVSWTTMIQGYVKMGFAREGVGLY-IIRNSNVNLDVFVGNALVDMYLKCGDANFA 259

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR---NPGPSVYK 236
            K  Q   + +N  S        + +++  L + G   E+      M R    P      
Sbjct: 260 RKVFQEMPV-KNVVS--------WNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLV 310

Query: 237 ALLSACQVHGNREIA 251
           A+L++C   G  E+ 
Sbjct: 311 AVLNSCANLGVLELG 325


>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 108/295 (36%), Positives = 166/295 (56%), Gaps = 5/295 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   ++  +  RN +SWNA++ GF  +G  E+A+  F EM + G   +  T    + +  
Sbjct: 183 DALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQSTFPCAITSAA 242

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            ++    GK  HA   K    S+VFV N LV  YA CG++ D+  VF+ + +R+ VSWN+
Sbjct: 243 NMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFNELPDRNTVSWNA 302

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G A +G   +AV  FE+M+   ++P+  T L +L AC HAG ++KG  YF  MR + 
Sbjct: 303 VICGFAQNGRGEDAVIFFERMRAAGLRPNSVTLLGLLCACNHAGLVEKGYMYFNQMRQE- 361

Query: 194 SLEPP--RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
             EP   + EHY  +V LL R G L EA  F++ +  +PG   +KALL  C +H N E++
Sbjct: 362 --EPGILKPEHYACMVDLLSRFGRLKEAAKFLHDLPFDPGTGFWKALLGGCHIHSNAELS 419

Query: 252 VRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             +A+++L L P D + YV+LSN   A   W     IR  M  +G+++ PG SW+
Sbjct: 420 DLAAQKILALDPEDVSSYVMLSNAYSAAGRWQQVSTIRREMKEKGLKRIPGCSWI 474



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 31/210 (14%)

Query: 7   SRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT 66
           S+ +  +D   ++  +   + +S   +I  F      E+A+  FS M    I  + FT  
Sbjct: 44  SKSNIRMDVDELFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFA 103

Query: 67  SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA-IC--------------- 110
           +++ +   +     GKQ+HA   K+G ++ VFV + ++  YA +C               
Sbjct: 104 TVIHSSTGLKNIYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKP 163

Query: 111 ---------------GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
                          G I+DA ++F  M ER++VSWN+++ G +  G++ EAV LF +M 
Sbjct: 164 NVVSYTTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEML 223

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +    P+ +TF   +++  +   +  G  +
Sbjct: 224 REGFMPNQSTFPCAITSAANMASLGMGKSF 253



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 16/174 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  D   V++ +  RN +SWNA+I GF   G GE A+  F  MR AG+  +  T+
Sbjct: 276 YAKCGSMEDSLLVFNELPDRNTVSWNAVICGFAQNGRGEDAVIFFERMRAAGLRPNSVTL 335

Query: 66  TSIVGAI---GVISG----FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
             ++ A    G++      F + +Q    I K  + +       +V + +  G + +A K
Sbjct: 336 LGLLCACNHAGLVEKGYMYFNQMRQEEPGILKPEHYAC------MVDLLSRFGRLKEAAK 389

Query: 119 VFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
               +  +     W +LL GC  H +S   +      +   + P+  +  V+LS
Sbjct: 390 FLHDLPFDPGTGFWKALLGGC--HIHSNAELSDLAAQKILALDPEDVSSYVMLS 441


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 178/304 (58%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C      + V+  +  R+ I+WNA+I+G+   G     L+ +SEM+ +G+  D 
Sbjct: 203 VTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSADA 262

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+  ++ A   +     G+++   I + G+  N F++N LV MYA CG +  A +VF  
Sbjct: 263 VTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCGNLTRAREVFDR 322

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             E+ +VSW +++ G   HG+   A++LF++M ++ ++PD T F+ VLSAC HAG  D+G
Sbjct: 323 SGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSACSHAGLTDRG 382

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L+YF  M     L+P   EHY+ +V LLGRAG L EA + I SM   P  +V+ ALL AC
Sbjct: 383 LEYFKEMERKYGLQPG-PEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVWGALLGAC 441

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N EIA  + + V++L P +   YVLLSN+    +  +    +R +M  R +RK PG
Sbjct: 442 KIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMRERKLRKDPG 501

Query: 303 YSWV 306
           YS+V
Sbjct: 502 YSYV 505



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 97/182 (53%), Gaps = 8/182 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA---GID 59
           I TY++C      + V+  +     I +NA+I+G+        A+  F +MR+    G+D
Sbjct: 96  INTYAKCSLHHHARKVFDEM-PNPTICYNAMISGYSFNSKPLHAVCLFRKMRREEEDGLD 154

Query: 60  IDY----FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
           +D      T+ S+V    V +    G  +H    + G+ +++ V N LV MY  CG +  
Sbjct: 155 VDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVEL 214

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
           A KVF  M  RDL++WN+++ G A +G++R  ++++ +M+ + +  D  T L V+SAC +
Sbjct: 215 ARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSADAVTLLGVMSACAN 274

Query: 176 AG 177
            G
Sbjct: 275 LG 276



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 8/162 (4%)

Query: 29  SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALI 88
           +WN  +          +AL  +  M ++    + FT   ++ +   +S      Q+HA +
Sbjct: 21  AWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAHV 80

Query: 89  FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148
            + G   + + ++ L+  YA C   + A KVF  M     + +N+++ G + +     AV
Sbjct: 81  IRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPN-PTICYNAMISGYSFNSKPLHAV 139

Query: 149 QLFEQMQKTE-------IKPDGTTFLVVLSACCHAGFIDKGL 183
            LF +M++ E       +  +  T L ++S C  A  +  G+
Sbjct: 140 CLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGV 181


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 171/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D    +  +  ++ +S++AI++G    G+   AL  F  M+ +GID D  T+
Sbjct: 357 YAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTM 416

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   ++  + G   H  +   G+ ++  + N L+ MY+ CG I+ A +VF+ MD 
Sbjct: 417 LGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDR 476

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VSWN++++G   HG   EA+ LF  +    +KPD  TF+ +LS+C H+G + +G  +
Sbjct: 477 HDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLW 536

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D S+  PR EH   +V +LGRAG ++EA  FI +M   P   ++ ALLSAC++H
Sbjct: 537 FDAMSRDFSI-VPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIH 595

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+    +K++  L P     +VLLSN+  A   WDDA  IR    + G++K PG SW
Sbjct: 596 KNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSW 655

Query: 306 V 306
           +
Sbjct: 656 I 656



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 142/277 (51%), Gaps = 8/277 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFT 64
           Y++C   L  + ++  +  RN++SW+A+I G+      ++AL+ F +M  +  +D    T
Sbjct: 255 YAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVT 314

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + S++ A   ++    G+++H  I K+G   ++ + N L+ MYA CG I+DA + F  M+
Sbjct: 315 LGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMN 374

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL- 183
            +D VS+++++ GC  +G +  A+ +F  MQ + I PD TT L VL AC H   +  G  
Sbjct: 375 PKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFC 434

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            + YL+    + +        A++ +  + G ++ A    N M R+   S + A++    
Sbjct: 435 SHGYLIVRGFATDTLIC---NALIDMYSKCGKISFAREVFNRMDRHDIVS-WNAMIIGYG 490

Query: 244 VH--GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
           +H  G   + +      L L P+D     LLS+ S +
Sbjct: 491 IHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHS 527



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 140/270 (51%), Gaps = 9/270 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C   ++ Q ++SS+  R+ ++WNA+IAG    G  + A++   +M++ GI  +  TI
Sbjct: 154 YAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTI 213

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++  +G       GK +H    +  +D+ V V   L+ MYA C  +  A K+F  M  
Sbjct: 214 VGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGV 273

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           R+ VSW++++ G       +EA++LF+QM  K  + P   T   VL AC     + +G +
Sbjct: 274 RNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRK 333

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV-YKALLSAC 242
            + Y+++    L+         ++ +  + G +++A  F + M  NP  SV + A++S C
Sbjct: 334 LHCYIIKLGXVLDILLG---NTLLSMYAKCGVIDDAIRFFDXM--NPKDSVSFSAIVSGC 388

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLL 272
             +GN  +A+ S  R++ L   DP +  +L
Sbjct: 389 VQNGNAAVAL-SIFRMMQLSGIDPDLTTML 417



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 94/177 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C+  +  + ++  +   + I WN II  +   G  + A+  +  M   G+  + +T 
Sbjct: 53  YLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTY 112

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   +   ++G ++H+     G +S+VFV   LV  YA CG + +A ++FSSM  
Sbjct: 113 PFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH 172

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           RD+V+WN+++ GC+ +G   +AVQL  QMQ+  I P+ +T + VL     A  +  G
Sbjct: 173 RDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG 229



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 97/205 (47%), Gaps = 9/205 (4%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
             E K++H    K   +++  V ++L  +Y  C  +  A ++F  +    ++ WN ++  
Sbjct: 24  LTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRA 83

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A +G    A+ L+  M    ++P+  T+  VL AC     I+ G++    + + A +  
Sbjct: 84  YAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE----IHSHAKMFG 139

Query: 198 PRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
             ++ +  TA+V    + G L EA+   +SMS       + A+++ C ++G  + AV+  
Sbjct: 140 LESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRD-VVAWNAMIAGCSLYGLCDDAVQLI 198

Query: 256 KRVLD--LWPNDPAIYVLLSNVSKA 278
            ++ +  + PN   I  +L  V +A
Sbjct: 199 MQMQEEGICPNSSTIVGVLPTVGEA 223


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 165/301 (54%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S L  + ++  +  ++ + WN +I GF       +AL  F +M   GI      +
Sbjct: 547 YIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAV 606

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T ++GA   +S  + GK++H+   K     + FV   L+ MYA CG +  +  +F  ++E
Sbjct: 607 TGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNE 666

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D   WN ++ G   HG+  +A++LFE MQ    +PD  TFL VL AC HAG + +GL+Y
Sbjct: 667 KDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKY 726

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M+N   ++ P+ EHY  +V +LGRAG L EA   +N M   P   ++ +LLS+C+ +
Sbjct: 727 LGQMQNLYGVK-PKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNY 785

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ EI    +K++L+L PN    YVLLSN+      WD+   +R  M   G+ K  G SW
Sbjct: 786 GDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSW 845

Query: 306 V 306
           +
Sbjct: 846 I 846



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDID 61
           I  YS C S  D + V+ + + ++   +NA+++G+        A+  F E+  A  +  D
Sbjct: 135 IAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPD 194

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            FT+  +  A   ++  + G+ +HAL  K G  S+ FV N L+ MY  CG +  A KVF 
Sbjct: 195 NFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFE 254

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE---IKPDGTTFLVVLSACCHAGF 178
           +M  R+LVSWNS++  C+ +G   E   +F+++  +E   + PD  T + V+ AC   G 
Sbjct: 255 TMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGE 314

Query: 179 IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
           +  G+    L       E     +  ++V +  + G+L EA +  +
Sbjct: 315 VRMGMVVHGLAFKLGITEEVTVNN--SLVDMYSKCGYLGEARALFD 358



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 4/175 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM---RQAGID 59
           I  Y +C        V+ ++R RN +SWN+++      G   +    F  +    + G+ 
Sbjct: 237 IAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLV 296

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            D  T+ +++ A   +   + G  +H L FK+G    V V N LV MY+ CG + +A  +
Sbjct: 297 PDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARAL 356

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSAC 173
           F     +++VSWN+++ G +  G  R   +L ++MQ+ E ++ +  T L VL AC
Sbjct: 357 FDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPAC 411



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 120/247 (48%), Gaps = 7/247 (2%)

Query: 3   ILTYSRCDSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           +  Y++C SSLD  + V+  +  +   SWNA+I      G   ++L  F  M  +G+D D
Sbjct: 443 VAAYAKC-SSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPD 501

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            FTI S++ A   +   + GK++H  + + G + + F+   L+ +Y  C ++     +F 
Sbjct: 502 RFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFD 561

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M+ + LV WN ++ G + +    EA+  F QM    IKP       VL AC     +  
Sbjct: 562 KMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRL 621

Query: 182 GLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           G + + + ++   S +   A    A++ +  + G + ++++  + ++     +V+  +++
Sbjct: 622 GKEVHSFALKAHLSED---AFVTCALIDMYAKCGCMEQSQNIFDRVNEKD-EAVWNVIIA 677

Query: 241 ACQVHGN 247
              +HG+
Sbjct: 678 GYGIHGH 684



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 96/193 (49%), Gaps = 2/193 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFT 64
           YS+C    + + ++     +N +SWN II G+   G      +   EM R+  + ++  T
Sbjct: 344 YSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVT 403

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + +++ A          K++H   F+ G+  +  V N  V  YA C +++ A +VF  M+
Sbjct: 404 VLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGME 463

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            + + SWN+L+   A +G+  +++ LF  M  + + PD  T   +L AC    F+  G +
Sbjct: 464 GKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKE 523

Query: 185 -YFYLMRNDASLE 196
            + +++RN   L+
Sbjct: 524 IHGFMLRNGLELD 536



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 13/218 (5%)

Query: 37  FCNLGSGEQALKCFSEMRQAGI----DIDYFTITSIVGAIGVISGFKEGKQMHALI---F 89
            C+ G+   AL       Q G     DI    I  ++ A G       G+++HAL+    
Sbjct: 63  LCDSGNLNDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASH 122

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
           K+  D  V +  R++ MY+ CG+ +D+  VF +  E+DL  +N+LL G + +   R+A+ 
Sbjct: 123 KLRND--VVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAIS 180

Query: 150 LF-EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208
           LF E +  T++ PD  T   V  AC     ++ G     L             +  A++ 
Sbjct: 181 LFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGN--ALIA 238

Query: 209 LLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
           + G+ GF+  A     +M RN     + +++ AC  +G
Sbjct: 239 MYGKCGFVESAVKVFETM-RNRNLVSWNSVMYACSENG 275


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 170/302 (56%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C  +   + V+  +R RN +SW ++I  +   G+ E AL  +   R  G +   F +
Sbjct: 260 YGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMV 319

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++     + G   G+ +HA+  +   D+N+FV + LV MY  CG + DA +VF  M E
Sbjct: 320 SSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPE 379

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT-EIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           R+LV+WN+++ G AH G ++ A+ +F+ M ++    P+  T + V++AC   G    G +
Sbjct: 380 RNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYE 439

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  MR    +E PR EHY  +V LLGRAG    A   I  M   P  SV+ ALL AC++
Sbjct: 440 LFDTMRERFGVE-PRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKM 498

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HG  E+   +++++ +L P D   +VLLSN+  +   W +A D+R  M N GI+K+PG S
Sbjct: 499 HGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKEPGCS 558

Query: 305 WV 306
           W+
Sbjct: 559 WI 560



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 11/219 (5%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN I+WNA++      G   +  K +  +R+AG   +  ++ +   A    
Sbjct: 169 RRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGA 228

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+Q H  +   G+D +V V N +V  Y  C     A  VF  M  R+ VSW S++
Sbjct: 229 MFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMI 288

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV--VLSACCHAGFIDKGLQYFYLMRNDA 193
           +  A HG   +A+ ++   + T  +P  T F+V  VL+ C  AG +  GL +   +   A
Sbjct: 289 VAYAQHGAEEDALAVYMGARNTGEEP--TDFMVSSVLTTC--AGLL--GLNFGRALHAVA 342

Query: 194 SLEPPRAEHY--TAIVGLLGRAGFLNEAES-FINSMSRN 229
                 A  +  +A+V + G+ G + +AE  F++   RN
Sbjct: 343 VRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERN 381



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 3/161 (1%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG--FKEGKQMH 85
           +S+ A I+G         AL  F+ M + G+  + FT  S   A           G Q+H
Sbjct: 77  VSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQIH 136

Query: 86  ALIFKIGY-DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           AL  + GY   + FV    + MY   G +  A ++F  M  R++++WN+++      G  
Sbjct: 137 ALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRP 196

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            E  + +  +++    P+  +     +AC  A F+  G Q+
Sbjct: 197 LETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQF 237


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+ ++  D +  +  +  +N +SW  +  G+   G G++ ++   EM +     D   +
Sbjct: 324 YSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPDELAL 383

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ + G +S   E  Q+HA + + G+++ + + N LV  Y+ CG+I  A + FSS+ E
Sbjct: 384 ASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAE 443

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D++SW SL+   A HG S++ V +FE++  + ++PD   FL VLSAC H GF+ +GL Y
Sbjct: 444 PDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSACAHGGFVLEGLHY 503

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM N   + P  +EHYT+I+ LLGRAGFL+EA + + SM   P      A L AC+V+
Sbjct: 504 FNLMINVYQIMPD-SEHYTSIIDLLGRAGFLDEAVNLLTSMPVEPRSDTLGAFLGACKVY 562

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +A  +++++  + PN+P  Y L+SN+  +   W D   +R LM  R   K PG SW
Sbjct: 563 RNVGLARWASEKLFVMEPNEPGKYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSW 622

Query: 306 V 306
           +
Sbjct: 623 M 623



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 129/271 (47%), Gaps = 27/271 (9%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q+ +  V +R+ + WN +++ +   G   +A   F  MR  G+  D FT TS++ + GV+
Sbjct: 233 QSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVL 292

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                GKQ+H LI ++ +D +V V + LV MY+    I DA K F  M  +++VSW ++ 
Sbjct: 293 GSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMJVKNIVSWTTMX 352

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----------CHAGFIDKGLQ 184
           +G   HG  +E ++L ++M +    PD      +LS+C            HA  ++ G +
Sbjct: 353 VGYGQHGDGKEXMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFE 412

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  + N             A+V    + G +  A    +S++  P    + +L+ A   
Sbjct: 413 AFLSIAN-------------ALVSAYSKCGSIGSAFQSFSSVAE-PDIISWTSLMGAYAF 458

Query: 245 HGNREIAVRSAKRVL--DLWPNDPAIYVLLS 273
           HG  +  V   +++L  ++ P+  A   +LS
Sbjct: 459 HGLSKQGVDVFEKILSSNVRPDKVAFLGVLS 489



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 5/177 (2%)

Query: 2   QIL-TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGF----CNLGSGEQALKCFSEMRQA 56
           Q+L  Y +C    D   ++  +  +N +SWN +I G     C          CF +M   
Sbjct: 113 QVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHCFRQMVLE 172

Query: 57  GIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
            +  +  T+  ++ A   ++     +Q+H  I K G+DSN FV + LV  YA  G +++A
Sbjct: 173 MMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEA 232

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
              F  +  RDLV WN ++   A +G   +A  +F+ M+   +K D  TF  ++++C
Sbjct: 233 QSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSC 289



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           I   +G + G   GKQ+HA + K+G  + + +QN+++ +Y  C   ND  K+F  M  ++
Sbjct: 82  ISAKLGFLHG---GKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKN 138

Query: 128 LVSWNSLLLGCAHHGYSREAVQL----FEQMQKTEIKPDGTTFLVVLSA 172
           +VSWN+L+ G          V+L    F QM    + P+  T   +L A
Sbjct: 139 VVSWNTLICGVVEGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRA 187


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 178/303 (58%), Gaps = 2/303 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYF 63
            Y++C      + V+  +  R+ ISWN+IIA +   G   ++++ F  M + G I+ +  
Sbjct: 305 AYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAV 364

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T+++++ A       + GK +H  + K+G +SNVFV   ++ MY  CG +  A K F  M
Sbjct: 365 TLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRM 424

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            E+++ SW++++ G   HG+++EA+++F +M    +KP+  TF+ VL+AC HAG +++G 
Sbjct: 425 REKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGW 484

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            +F  M ++  +EP   EHY  +V LLGRAG+L EA   I  M   P   V+ ALL AC+
Sbjct: 485 HWFKAMSHEFDVEPG-VEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACR 543

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
           +H N ++   SA+++ +L P +   YVLLSN+      W+D   +R LM N G+ K PG+
Sbjct: 544 MHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGF 603

Query: 304 SWV 306
           S V
Sbjct: 604 SLV 606



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 9/181 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSE--MRQAGID---- 59
           YS+C    D + ++  +  RN +SW ++I G+       +AL  F E  + ++G +    
Sbjct: 197 YSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGE 256

Query: 60  --IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
             +D   + S++ A   +S     + +H  + K G++ ++ V+N L+  YA CG +  + 
Sbjct: 257 VCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSR 316

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT-EIKPDGTTFLVVLSACCHA 176
           +VF  M ERD++SWNS++   A +G S E++++F +M K  EI  +  T   VL AC H+
Sbjct: 317 RVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHS 376

Query: 177 G 177
           G
Sbjct: 377 G 377



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 22  VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG 81
           V   N  SWN++IA     G   +AL+ FS MR+  +  +  T    + +   +     G
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 171

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           +Q H      G++ ++FV + LV MY+ CG + DA  +F  +  R++VSW S++ G   +
Sbjct: 172 RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 231

Query: 142 GYSREAVQLFEQMQKTEIKPDG--------TTFLVVLSACCHAG--FIDKGLQYFYLMR 190
             +  A+ LF++    E   +G           + VLSAC       I +G+  F + R
Sbjct: 232 DDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKR 290


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 178/301 (59%), Gaps = 2/301 (0%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            Y++C S  + + V+S +  ++ +SWN +I G+       +AL+ F +M Q     D  T+
Sbjct: 717  YAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM-QKQFKPDDITM 775

Query: 66   TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              ++ A   ++   +G+++H  I + GY S++ V   LV MYA CG +  A  +F  + +
Sbjct: 776  ACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPK 835

Query: 126  RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            +DL+SW  ++ G   HG+  EA+  F +M+   I+PD ++F V+L+AC H+G +++G ++
Sbjct: 836  KDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKF 895

Query: 186  FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            F  MRN+  +E P+ EHY  +V LL R G L++A  FI SM   P  +++  LLS C++H
Sbjct: 896  FNSMRNECGVE-PKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIH 954

Query: 246  GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
             + ++A + A+ + +L P++   YV+L+NV    + W++   +R  M  RG ++ PG SW
Sbjct: 955  HDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSW 1014

Query: 306  V 306
            +
Sbjct: 1015 I 1015



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 143/276 (51%), Gaps = 8/276 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C +      V+  +     +SW + IA +   G    A+  F EM+  G+  D +T+
Sbjct: 616 YSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTV 675

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSIV A    S   +G+ +H+ + K G  SN+ V N L+ MYA CG++ +A  VFS +  
Sbjct: 676 TSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPV 735

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D+VSWN+++ G + +    EA++LF  MQK + KPD  T   VL AC     +DKG + 
Sbjct: 736 KDIVSWNTMIGGYSQNSLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREI 794

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + +++R     +   A    A+V +  + G L  A+   + + +    S +  +++   +
Sbjct: 795 HGHILRRGYFSDLHVA---CALVDMYAKCGLLVLAQLLFDMIPKKDLIS-WTVMIAGYGM 850

Query: 245 H--GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
           H  GN  I+  +  R+  + P++ +  V+L+  S +
Sbjct: 851 HGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHS 886



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 4/205 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
            N++  +   + +SWN++I G    G     L+ F +M   G+++D  T+ S++ A   I
Sbjct: 525 HNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANI 584

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G+ +H    K  +   V   N L+ MY+ CG +N A +VF  M +  +VSW S +
Sbjct: 585 GNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTI 644

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
                 G   +A+ LF++MQ   ++PD  T   ++ AC  +  +DKG   + Y+++N   
Sbjct: 645 AAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG 704

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEA 219
              P      A++ +  + G + EA
Sbjct: 705 SNLPVT---NALINMYAKCGSVEEA 726



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 94/180 (52%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y  C   +  + ++  +       WN +++ +  +G+  +++  F +M++ G+  + 
Sbjct: 411 VFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNC 470

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           +T T ++     +   KE K++H  + K+G+ SN  V N L+  Y   G +  A+ +F  
Sbjct: 471 YTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDE 530

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + E D+VSWNS++ GC  +G+S   +++F QM    ++ D TT + VL A  + G +  G
Sbjct: 531 LSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLG 590



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 6/167 (3%)

Query: 4   LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           L +S    S  F N   SV T+NQ   NA I  FC +G    A++  ++ +   + ++ +
Sbjct: 317 LLHSTVCVSPSFTNTTHSV-TQNQ---NAKINKFCEMGDLRNAIELLTKSKSYELGLNSY 372

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
              S++         ++GK++H++I   G   +  +  +LVFMY  CG +    K+F  +
Sbjct: 373 C--SVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKI 430

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
               +  WN L+   A  G  RE+V LF++MQK  +  +  TF  VL
Sbjct: 431 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVL 477


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 177/301 (58%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    D   V+      NQ++W ++I G    G  E AL  F +M ++ I  + FT+
Sbjct: 323 YYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTL 382

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   ++  ++GKQ+HA++ K G D + +V   L+  Y  CG+   A  VF+ + E
Sbjct: 383 SSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLE 442

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VS NS++   A +G+  EA+QLF  M+ T ++P+  T+L VLSAC +AG +++G   
Sbjct: 443 VDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHI 502

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F   RN  ++E  + +HY  +V LLGRAG L EAE  IN ++ +    +++ LLSAC++H
Sbjct: 503 FSSARNSGNIELTK-DHYACMVDLLGRAGRLKEAEMLINQVNISD-VVIWRTLLSACRIH 560

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E+A R   RV+DL P D   +VLLSN+  +T  W    ++++ M    ++K P  SW
Sbjct: 561 GDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSW 620

Query: 306 V 306
           V
Sbjct: 621 V 621



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 130/275 (47%), Gaps = 5/275 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     D + V   V  ++ + + A+I G+ + G   ++L+ F  M + GI+ + +T+
Sbjct: 222 YAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTL 281

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++   G +     G+ +H LI K G +S V  Q  L+ MY  CG ++D+ KVF     
Sbjct: 282 SSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFIN 341

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            + V+W S+++G   +G    A+  F QM ++ I P+  T   VL AC     +++G Q 
Sbjct: 342 PNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQI 401

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +  +M+    ++        A++   G+ G    A S  N +      SV   + S  Q 
Sbjct: 402 HAIVMKFGLDIDKYVG---AALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQN 458

Query: 245 -HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
             G+  + + S  +   L PN+     +LS  + A
Sbjct: 459 GFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNA 493



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 134/266 (50%), Gaps = 8/266 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C S +  + V+  V  R+ ++WN++IA +   G  ++A+  +  M   GI  D 
Sbjct: 117 IDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDE 176

Query: 63  FTITSIVGAIGVISGFKEGKQMH--ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           FT +S+  A   +    EG++ H  +++  +G  SNVFV + LV MYA  G + DA  V 
Sbjct: 177 FTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGV-SNVFVGSALVDMYAKFGKMRDARLVS 235

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             +  +D+V + +L++G +HHG   E++Q+F  M K  I+ +  T   VL  C +   + 
Sbjct: 236 DQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLT 295

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
            G +  + +   A LE   A   T+++ +  R G ++++         NP    + +++ 
Sbjct: 296 SG-RLIHGLIVKAGLESAVASQ-TSLLTMYYRCGLVDDSLKVFKQFI-NPNQVTWTSVIV 352

Query: 241 ACQVHGNREIAVRSAKRVL--DLWPN 264
               +G  EIA+   +++L   + PN
Sbjct: 353 GLVQNGREEIALLKFRQMLRSSITPN 378



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 19/139 (13%)

Query: 45  QALKCFSEMRQAGIDIDYFT-ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRL 103
           Q+ K +S + Q  I I   T IT I              Q HAL  K G+  ++   N+L
Sbjct: 75  QSTKLYSSLIQQCIGIKSITDITKI--------------QSHAL--KRGFHHSL--GNKL 116

Query: 104 VFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG 163
           +  Y  CG++  A KVF  +  R +V+WNS++     +G S+EA+ ++++M    I PD 
Sbjct: 117 IDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDE 176

Query: 164 TTFLVVLSACCHAGFIDKG 182
            TF  V  A    G + +G
Sbjct: 177 FTFSSVFKAFSDLGLVHEG 195


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/292 (36%), Positives = 170/292 (58%), Gaps = 2/292 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  ++ +SW+ +I GF + G   +A   F E++Q G+  +  ++T  + A    
Sbjct: 223 RKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADA 282

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-RDLVSWNSL 134
              + GK +H  I K G+   V V N L+  Y+ CG +  A  VF  M E R +VSW S+
Sbjct: 283 GAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSM 342

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + G A HGY  EA+QLF +M+++ I+PDG  F+ +L AC HAG I+KG +YFY M++  +
Sbjct: 343 IAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYN 402

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           +EP   EHY  +V L GRAG L++A  FI  M   P   +++ LL AC +HGN ++A R 
Sbjct: 403 IEPA-IEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERV 461

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +R+ +L PN+   +VLLSN+      W D   +R  M ++ + K PG+S +
Sbjct: 462 KERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMI 513



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 121/283 (42%), Gaps = 25/283 (8%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQ-AGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           N +I G     + + +L  F EMR+     +D F+   ++ A       + G Q+H    
Sbjct: 74  NTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAI 133

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
             G D+++FV   LV MY+ CG +  A KVF  M E ++V+WN+++  C   G  + A  
Sbjct: 134 VHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADM 193

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDASLEPPRAEHYTAIV 207
           +F +M    +    T++ V+L+    AG ++   + F  M  ++D S         T IV
Sbjct: 194 MFNRMPFRNL----TSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWS-------TMIV 242

Query: 208 GLLGRAGFLNEAESFINSMSR---NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
           G     GF  EA  F   + +    P        LSAC   G  E       ++L  +  
Sbjct: 243 G-FAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFG-----KILHGFIE 296

Query: 265 DPAIYVLLSNVSKATDCWDDAGDI--RTLMYNRGIRKKPGYSW 305
                 ++S  +   D +   G++    L++ R   K+   SW
Sbjct: 297 KSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSW 339



 Score = 44.7 bits (104), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 16/210 (7%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC--GAINDANKVFSSMDERDLVSWNSLL 135
            K  KQ+HA + K G D++  +  +L+   A+    A++ A ++F      D+   N+L+
Sbjct: 18  LKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLI 77

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
            G A     + ++  F +M++    P D  +F  +L A      ++ G+Q    +   A 
Sbjct: 78  RGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQ----LHCQAI 133

Query: 195 LEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
           +       +  T +V +    GF+  A+     M   P    + A+++AC   G+    V
Sbjct: 134 VHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMF-EPNVVAWNAVVTACFRCGD----V 188

Query: 253 RSAKRVLDLWP--NDPAIYVLLSNVSKATD 280
           + A  + +  P  N  +  V+L+  +KA +
Sbjct: 189 KGADMMFNRMPFRNLTSWNVMLAGYTKAGE 218


>gi|125524780|gb|EAY72894.1| hypothetical protein OsI_00769 [Oryza sativa Indica Group]
          Length = 569

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 168/302 (55%), Gaps = 6/302 (1%)

Query: 9   CDSSLD----FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           CD +LD     + +  +V   N +SW+A+I GF + G  ++AL+ F  M+Q  +  +  T
Sbjct: 230 CDEALDVLAQMEQIGGTV-APNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPNVVT 288

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + +++ A   +   + G+++H    K   D +  V+N L+ MYA CG ++ A KVF  M 
Sbjct: 289 MATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMK 348

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RDL+SWNS+L G   HG   EA+ LF  M    ++PDG TF+ VLSAC HAG + +G +
Sbjct: 349 TRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRR 408

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M     + P   EHYT +V LLGRAG L +A   + +M   P   V+ ALL++C++
Sbjct: 409 LFDRMVRAHKISPSM-EHYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSCRI 467

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HG+  +A  +   VL         ++L++N+      WD++  +R +    G+RK PG S
Sbjct: 468 HGDAAMAEATIANVLQSEDQSTGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNPGQS 527

Query: 305 WV 306
           W+
Sbjct: 528 WI 529



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 85/172 (49%), Gaps = 3/172 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + V+  ++TR+ ISWN+++AG+   G  ++AL  F++M  A ++ D  T 
Sbjct: 331 YAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTF 390

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQ-NRLVFMYAICGAINDANKVFSSMD 124
            +++ A G      EG+++   + +    S        +V++    G + DA+++  +M 
Sbjct: 391 VAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMP 450

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV-LSACC 174
            R DL  W +LL  C  HG +  A      + ++E +  G   L+  L A C
Sbjct: 451 VRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLITNLYAMC 502



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 89/188 (47%), Gaps = 6/188 (3%)

Query: 10  DSSLDFQNVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
           D++ D     ++  TR + ++W A+++     G     L+ F EM+++G + +  ++   
Sbjct: 92  DAARDAFARMAAAGTRPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVA 151

Query: 69  VGAIGVIS--GFKEGKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + A          +GK +H   + K      +FV N L+ MY   G ++DA K F     
Sbjct: 152 LSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATA 211

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT--EIKPDGTTFLVVLSACCHAGFIDKGL 183
           ++ V+WN+L+   A  G   EA+ +  QM++    + P+  ++  V+     +G  D+ L
Sbjct: 212 KNTVTWNTLITSYAAAGLCDEALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRAL 271

Query: 184 QYFYLMRN 191
           + F  M+ 
Sbjct: 272 ELFRRMQQ 279



 Score = 40.8 bits (94), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 1/108 (0%)

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-RDLVSWNSLLLGCAHHG 142
           +HA    +G  +   V  +++  Y+  G   DA +VF +M   R    WN+L+   +   
Sbjct: 30  VHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSSGC 89

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
               A   F +M     +PD  T+  +LSA   +G     LQ F  M+
Sbjct: 90  DPDAARDAFARMAAAGTRPDAVTWTALLSAHARSGKHADVLQLFGEMQ 137


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 165/301 (54%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +CD   D    +  +  +N +SW A++  +      E AL+ F +M   G+  + FT 
Sbjct: 254 YGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTY 313

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
              + +   ++  + G  + A + K G+  ++ V N L+ MY+  G+I DA++VF SM  
Sbjct: 314 AVALNSCAGLAALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPL 373

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSWN ++ G AHHG +RE ++ F  M    + P   TF+ VLSAC   G +D+   Y
Sbjct: 374 RDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVLSACAQLGLVDEAFYY 433

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M  +  + P + EHYT +VGLL R G L+EAE FI +         +++LL++CQV+
Sbjct: 434 LNTMMKEVGITPGK-EHYTCMVGLLCRVGRLDEAERFIVNNCIGTDVVAWRSLLNSCQVY 492

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +  R A+++L L P+D   YVLLSN+    + WD    +R  M  R +RK PG SW
Sbjct: 493 KNYGLGHRVAEQILQLEPSDVGTYVLLSNMYAKANRWDGVVKVRKHMRERAVRKSPGVSW 552

Query: 306 V 306
           +
Sbjct: 553 I 553



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 87/171 (50%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C    D   V+ SV   +  ++N++I G+ + G  + +L     M       DY
Sbjct: 150 LYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDY 209

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            +  +++G    +     G Q+HA   K   + NV+V + LV MY  C  ++DAN+ F  
Sbjct: 210 VSYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEV 269

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           + E+++VSW +++     +    +A+QLF  M+   ++P+  T+ V L++C
Sbjct: 270 LPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSC 320



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 84/168 (50%), Gaps = 3/168 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + V+ ++  RN +S N +++G+ + G  +++L+    +R     ++ + +
Sbjct: 55  YAKCGRVGLARTVFDAMPFRNAVSANLLMSGYASSGRHKESLQL---LRVVDFGMNEYVL 111

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++ V A   +  +  G+Q H    K G+    +V N +++MY  C  + DA+KVF S+  
Sbjct: 112 SAAVSATANVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESVSG 171

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            D  ++NS++ G    G    ++ +   M     K D  +++ VL  C
Sbjct: 172 FDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHC 219



 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 78  FKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             +GK +HA LI    +D  V + N L+  YA CG +  A  VF +M  R+ VS N L+ 
Sbjct: 27  LSKGKALHARLITAAHFD--VVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMS 84

Query: 137 GCAHHGYSREAVQLF 151
           G A  G  +E++QL 
Sbjct: 85  GYASSGRHKESLQLL 99


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 171/301 (56%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +  +  + + V+  +  R+ +S  AII+G+  LG  ++AL  F ++  +G+  +Y T 
Sbjct: 187 YGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTF 246

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++ ++  ++    GKQ+H LI +      + +QN L+ MY+ CG +  + +VF +M +
Sbjct: 247 TTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQ 306

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R  +SWN++L+G   HG  +E VQLF  M + E+KPD  T L VLS C H G +D+GL  
Sbjct: 307 RSAISWNAMLMGYGRHGIGQEVVQLFRTMTE-EVKPDSVTLLAVLSGCSHGGLVDEGLDI 365

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F L+  + +       HY  ++ LLGR+G L +A   I  M   P P+++ +LL AC+VH
Sbjct: 366 FDLIVKEQN-AVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVH 424

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +    A+++LD+ P +   YV+LSN+  A   W D   +R LM    + K+P  SW
Sbjct: 425 INVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSW 484

Query: 306 V 306
           +
Sbjct: 485 I 485



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 131/275 (47%), Gaps = 32/275 (11%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y RC +  D +NV   +  RN +SW A+I+G+   G   +AL+ F  M +AG   + 
Sbjct: 83  IILYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANE 142

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ +++ +  V    ++ +Q+H+L+ K  ++S++FV + L+ MY   G I +A KVF  
Sbjct: 143 FTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDM 202

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--------- 173
           + ERD VS  +++ G A  G   EA+ LF Q+  + ++ +  TF  +L++          
Sbjct: 203 LPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYG 262

Query: 174 --CHAGFIDKGLQYFYLMRNDA------------------SLEPPRAEHYTAIVGLLGRA 213
              H   + K L +F +++N                    ++    A  + A++   GR 
Sbjct: 263 KQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRH 322

Query: 214 GFLNEAESFINSMSR--NPGPSVYKALLSACQVHG 246
           G   E      +M+    P      A+LS C  HG
Sbjct: 323 GIGQEVVQLFRTMTEEVKPDSVTLLAVLSGCS-HG 356



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 65/123 (52%)

Query: 51  SEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC 110
           S +   G D  +    + + A        EG+Q+HA + K  Y   V++  RL+ +Y  C
Sbjct: 30  SSLAVPGADARFHDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRC 89

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           GA++DA  V   M ER++VSW +++ G +  G   EA++LF +M +   K +  T   VL
Sbjct: 90  GALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVL 149

Query: 171 SAC 173
           ++C
Sbjct: 150 TSC 152


>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/279 (39%), Positives = 163/279 (58%), Gaps = 1/279 (0%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SW ++I+GF       +    F EM   G      TI+S++ A   ++  + GK++H  
Sbjct: 265 VSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGY 324

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
              IG + +V+V++ LV MYA CG I++A  +F  M ER+ V+WNSL+ G A+HGY  EA
Sbjct: 325 AMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEA 384

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           ++LF QM++++ K D  TF  VL+AC HAG ++ G   F  M+    +E PR EHY  +V
Sbjct: 385 IELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIE-PRLEHYACMV 443

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267
            LLGRAG L+EA   I +M   P   V+ ALL AC+ HGN E+A  +A+ + +L P  P 
Sbjct: 444 DLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPG 503

Query: 268 IYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             +LLSN+      W +A  ++ +M  R   K PG SW+
Sbjct: 504 SSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWI 542



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 134/271 (49%), Gaps = 24/271 (8%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C    + + ++  +   N   W  +       G  E+AL  FSEM++ G+  + F +
Sbjct: 72  YTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVL 131

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A G +S  + G+ MH +I K  ++S+ ++ + L++MY+ CG +  A +VF  + +
Sbjct: 132 PSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVD 191

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL-- 183
           +DLV  N+++ G A HG+  EA+ L ++MQ+  +KP+  ++  +++     G  DK +  
Sbjct: 192 KDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVG--DKSMVS 249

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS--VYKALLSA 241
           + F LM  +  +EP      + I G +         ++F   + +   PS     +LL A
Sbjct: 250 EVFRLMTANG-VEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPA 308

Query: 242 C----------QVHG-------NREIAVRSA 255
           C          ++HG        +++ VRSA
Sbjct: 309 CTNVANLRHGKEIHGYAMVIGVEKDVYVRSA 339



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G+ +HA +  IG     +   +L+  Y  CG +++A K+F  +   ++  W  L   CA 
Sbjct: 46  GRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACAR 105

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
            G+  EA+  F +MQK  ++P+      +L AC H
Sbjct: 106 RGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGH 140



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 81/165 (49%), Gaps = 2/165 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    + + ++  +  RN ++WN++I G+ N G   +A++ F++M ++   +D+ T 
Sbjct: 344 YAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTF 403

Query: 66  TSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           T+++ A       + G+ +   +  K   +  +     +V +    G +++A  +  +M 
Sbjct: 404 TAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMP 463

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
            E D   W +LL  C +HG    A    E + + E +  G++ L+
Sbjct: 464 VEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLL 508



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 43/223 (19%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C        V+  +  ++ +  NA+++G+   G   +AL    +M+QAG+    
Sbjct: 170 IYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVK--- 226

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
               ++V    +I+GF +          +G  S V    RL+           AN V   
Sbjct: 227 ---PNVVSWNTLIAGFSQ----------VGDKSMVSEVFRLM----------TANGV--- 260

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             E D+VSW S++ G   + ++ E    F++M      P   T   +L AC +   +  G
Sbjct: 261 --EPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHG 318

Query: 183 LQ-YFYLM----RNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220
            + + Y M      D  +        +A+V +  + G+++EA+
Sbjct: 319 KEIHGYAMVIGVEKDVYVR-------SALVDMYAKCGYISEAK 354


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 114/299 (38%), Positives = 168/299 (56%), Gaps = 13/299 (4%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D  +V S ++ R+ I++ ++       G+ E AL   + M +  + +D F++ S + A  
Sbjct: 472 DAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAA 531

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            I   + GKQ+H    K G  S + V N LV +Y  CG I+DA++ F  + E D VSWN 
Sbjct: 532 GIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNG 591

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           L+ G A +G+   A+  FE M+   ++PD  T L+VL AC H G +D GL YF  MR   
Sbjct: 592 LIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKH 651

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            +  P+ +HY  +V LLGRAG L EA + I +M   P   +YK LL AC++HGN  +   
Sbjct: 652 GIR-PQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEH 710

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAG------DIRTLMYNRGIRKKPGYSWV 306
            A++ L+L P+DPA YVLL+N+      +DD+G        R +M  RG+RK PG SW+
Sbjct: 711 MARQGLELDPSDPAFYVLLANL------YDDSGRSELGEKTRRMMRERGVRKNPGQSWM 763



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 1/180 (0%)

Query: 6   YSRCDSSL-DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y +C + + D    +  + + N ISW ++IAGF   G  E+++K F  M+  G+  + FT
Sbjct: 362 YMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFT 421

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +++I+GA G I    + +++H  I K   D++V V N LV  YA  G ++DA  V S M 
Sbjct: 422 LSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMK 481

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD++++ SL       G    A+ +   M K +++ DG +    LSA      ++ G Q
Sbjct: 482 HRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQ 541



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 98/184 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    + + ++  +  R+  SW  +++ +  +G+ E+AL+ F  M  +G   + FT+
Sbjct: 60  YGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTL 119

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++ + +   +  F  G +  AL+ K G+DSN  + + L+  Y+ CG   +A +VF  M+ 
Sbjct: 120 STALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNN 179

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VSW  ++      G   +A+QL+ +M +T + P+  TF+ +L+A    G     L +
Sbjct: 180 GDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLGLNYGKLVH 239

Query: 186 FYLM 189
            +LM
Sbjct: 240 AHLM 243



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 1/179 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C  + +   V+  +   + +SW  +++ F   GS  QAL+ +  M Q G+  + FT 
Sbjct: 161 YSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTF 220

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A   + G   GK +HA +     + N+ ++  LV MY  C +I DA KV     E
Sbjct: 221 VKLLAASSFL-GLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLE 279

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            D+  W +++ G       REA+  F +M+ + + P+  T+  +L+AC     +D G Q
Sbjct: 280 YDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQ 338



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 51/95 (53%)

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           ++G  +H+ I K+G+  ++F+ N L+ +Y  C  + +A ++F  M  RD+ SW  L+   
Sbjct: 32  RDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAY 91

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
              G   EA++LF+ M  +   P+  T    L +C
Sbjct: 92  GKIGNHEEALELFDSMLISGEYPNEFTLSTALRSC 126



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 20/176 (11%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D    +  +   + +SWN +I G  + G    AL  F +MR AG++ D  T 
Sbjct: 565 YGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITC 624

Query: 66  TSIVGAI---GVISG----FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
             ++ A    G++      F+  ++ H +  +   D  V     LV +    G + +A  
Sbjct: 625 LLVLYACSHGGLVDMGLDYFQSMREKHGI--RPQLDHYVC----LVDLLGRAGRLEEAMN 678

Query: 119 VFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLS 171
           V  +M  + D + + +LL  C  HG     + L E M  Q  E+ P    F V+L+
Sbjct: 679 VIETMPFKPDALIYKTLLGACKLHG----NIPLGEHMARQGLELDPSDPAFYVLLA 730


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 173/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S  D   V+  +  +  + WN+IIA +   G  E+AL  + EMR +G  +D+FTI
Sbjct: 264 YSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTI 323

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + ++     ++  +  KQ HA + + G+ +++     LV  Y+  G + DA  VF+ M  
Sbjct: 324 SIVIRICARLASLEHAKQAHAALVRHGFATDIVANTALVDFYSKWGRMEDARHVFNRMRH 383

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++++SWN+L+ G  +HG  +EAV++FEQM +  + P   TFL VLSAC ++G   +G + 
Sbjct: 384 KNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSGLSQRGWEI 443

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           FY M+ D  ++ PRA HY  ++ LLGR   L+EA + I +    P  +++ ALL+AC++H
Sbjct: 444 FYSMKRDHKVK-PRAMHYACMIELLGRESLLDEAYALIRTAPFKPTANMWAALLTACRMH 502

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   +A+++  + P     Y++L N+  ++    +A  I   +  +G+R  P  SW
Sbjct: 503 KNLELGKLAAEKLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGILQTLKKKGLRMLPACSW 562

Query: 306 V 306
           V
Sbjct: 563 V 563



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 131/277 (47%), Gaps = 7/277 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  + +C   LD + ++  +  ++  SW  ++ G  + G+  +A + F  M +   D   
Sbjct: 160 LFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRS 219

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  +++ A   +   + GKQ+H+   K G   + FV   L+ MY+ CG+I DA+ VF  
Sbjct: 220 RTFATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQ 279

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E+  V WNS++   A HGYS EA+ L+ +M+ +    D  T  +V+  C     ++  
Sbjct: 280 MPEKTTVGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHA 339

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            Q +  L+R+  + +       TA+V    + G + +A    N M R+     + AL++ 
Sbjct: 340 KQAHAALVRHGFATDIVAN---TALVDFYSKWGRMEDARHVFNRM-RHKNVISWNALIAG 395

Query: 242 CQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVS 276
              HG  + AV   +++L   + P       +LS  S
Sbjct: 396 YGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSACS 432



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 99/212 (46%), Gaps = 9/212 (4%)

Query: 45  QALKCFS--EMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR 102
           +A++ F   E+   G  +   T  ++V A   +   +  K++   +   G++ +++V NR
Sbjct: 99  EAMELFEILELEHDGYGVGASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNR 158

Query: 103 LVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
           ++FM+  CG + DA K+F  M E+D+ SW +++ G    G   EA +LF  M K      
Sbjct: 159 VLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGR 218

Query: 163 GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT--AIVGLLGRAGFLNEAE 220
             TF  ++ A    G +  G Q    + + A       +H+   A++ +  + G + +A 
Sbjct: 219 SRTFATMIRASAGLGLVQVGKQ----IHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAH 274

Query: 221 SFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
              + M        + +++++  +HG  E A+
Sbjct: 275 CVFDQMPEKTTVG-WNSIIASYALHGYSEEAL 305


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 171/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      +  +  ++ +  ISW+++I G+   G   +A+  F  +++    ID F +
Sbjct: 628 YVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFAL 687

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SI+G     +  ++GKQM AL  K+       V N +V MY  CG +++A K F+ M  
Sbjct: 688 SSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQL 747

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D++SW  ++ G   HG  +++V++F +M +  I+PD   +L VLSAC H+G I +G + 
Sbjct: 748 KDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEEL 807

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  +     ++ PR EHY  +V LLGRAG L EA+  I++M   P   +++ LLS C+VH
Sbjct: 808 FSKLLETHGIK-PRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVH 866

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           G+ E+     K +L +   +PA YV++SN+      W++ G+ R L   +G++K+ G SW
Sbjct: 867 GDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSW 926

Query: 306 V 306
           V
Sbjct: 927 V 927



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 116/216 (53%), Gaps = 2/216 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C   L    V+ S+  RN +SW+A+++G    G  + +L  FSEM + GI  + FT 
Sbjct: 422 YCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTF 481

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++ + A G+++  ++G Q+H    KIG++  V V N LV MY+ CG IN+A KVF  + +
Sbjct: 482 STNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVD 541

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK--PDGTTFLVVLSACCHAGFIDKGL 183
           R L+SWN+++ G  H GY  +A+  F  MQ+  IK  PD  T   +L AC   G I  G 
Sbjct: 542 RSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGK 601

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
           Q    +       P  A    ++V L  + G+L  A
Sbjct: 602 QIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSA 637



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 144/303 (47%), Gaps = 13/303 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID--IDYF 63
           YS+C    + + V+  +  R+ ISWNA+IAGF + G G +AL  F  M++A I    D F
Sbjct: 523 YSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEF 582

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYD--SNVFVQNRLVFMYAICGAINDANKVFS 121
           T+TS++ A         GKQ+H  + + G+   S+  +   LV +Y  CG +  A K F 
Sbjct: 583 TLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFD 642

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + E+ ++SW+SL+LG A  G   EA+ LF+++Q+   + D      ++        + +
Sbjct: 643 QIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQ 702

Query: 182 GLQYFYLMRNDASLEPPRAEH--YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           G Q    M+  A   P   E     ++V +  + G ++EAE     M      S +  ++
Sbjct: 703 GKQ----MQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVIS-WTVVI 757

Query: 240 SACQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
           +    HG  + +VR    +L  ++ P++     +LS  S +    +       L+   GI
Sbjct: 758 TGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGI 817

Query: 298 RKK 300
           + +
Sbjct: 818 KPR 820



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 4/126 (3%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           N+   N L+ MY  C     A KVF SM ER++VSW++L+ G   +G  + ++ LF +M 
Sbjct: 411 NLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMG 470

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214
           +  I P+  TF   L AC     ++KGLQ + + ++    +     E   ++V +  + G
Sbjct: 471 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEM---MVEVGNSLVDMYSKCG 527

Query: 215 FLNEAE 220
            +NEAE
Sbjct: 528 RINEAE 533


>gi|242089513|ref|XP_002440589.1| hypothetical protein SORBIDRAFT_09g003570 [Sorghum bicolor]
 gi|241945874|gb|EES19019.1| hypothetical protein SORBIDRAFT_09g003570 [Sorghum bicolor]
          Length = 613

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 168/301 (55%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D   V+ S +  +++    I+ GF   G  E+A + F+EM   GIDID   +
Sbjct: 274 YSKCGLMEDALRVFRSCQDPDEVFLTVILVGFAQNGLEEKAFELFAEMVGKGIDIDANMV 333

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++GA G  + F  GKQ+HAL+ K  +  N +V N L+ MY+ CG + ++ +VF     
Sbjct: 334 SAVLGAFGASAPFALGKQIHALVIKKCFGGNTYVCNGLINMYSKCGELQESIEVFDGTPS 393

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++ V+WNS++   A HG+  E   LFE M+   +KP   TFL +L  C H G   KGL+ 
Sbjct: 394 KNTVTWNSIIAAFARHGHGSEVFGLFESMKADGVKPTNVTFLSLLHGCSHVGSASKGLEI 453

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M +   +  P+ EHY  +V +LGRA  L++A++FI          +++AL+ AC  H
Sbjct: 454 LNSMSSQYGIH-PKVEHYACVVDMLGRASQLDDAKAFIEDGPFKDSALLWQALMGACSFH 512

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + E+   +A+++L L P+  A YVLLSN+  +   WDD   I   M  +G+RK  G SW
Sbjct: 513 KDSEVGKYAAEKLLLLDPDCTAAYVLLSNIYSSEGRWDDRARILKRMREKGLRKDTGKSW 572

Query: 306 V 306
           +
Sbjct: 573 I 573



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 1/170 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y  C S    + V+ ++  RN ++W A+++G        ++L  F +MR A +D + 
Sbjct: 171 ITAYFECSSPGSAERVFDAMADRNVVTWTAMVSGMARAERYRESLSLFRQMRHA-VDANR 229

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            + +S + A        EG+Q+H L+ K G+++++ V++ L+ MY+ CG + DA +VF S
Sbjct: 230 ASYSSSLLACAGSLAASEGQQIHGLVVKAGFETDLHVESELMDMYSKCGLMEDALRVFRS 289

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
             + D V    +L+G A +G   +A +LF +M    I  D      VL A
Sbjct: 290 CQDPDEVFLTVILVGFAQNGLEEKAFELFAEMVGKGIDIDANMVSAVLGA 339



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 6/192 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y+RC    D    +  +  R+ +SWN+++A   +       L+            D+
Sbjct: 65  VAMYARCGRRGDAARAFDEMPLRDSVSWNSLLAASASAADALALLRRMLRAAPGAAACDH 124

Query: 63  FTITSIVGAIGVISGFKEGKQ-----MHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
            T+T+++ A     G           +H L    G D+ V V N L+  Y  C +   A 
Sbjct: 125 ATLTTVLSACARADGGGGTGAASLPVVHGLAVSCGLDAEVSVGNALITAYFECSSPGSAE 184

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           +VF +M +R++V+W +++ G A     RE++ LF QM+   +  +  ++   L AC  + 
Sbjct: 185 RVFDAMADRNVVTWTAMVSGMARAERYRESLSLFRQMRHA-VDANRASYSSSLLACAGSL 243

Query: 178 FIDKGLQYFYLM 189
              +G Q   L+
Sbjct: 244 AASEGQQIHGLV 255



 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 12/126 (9%)

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFK------------IGYDSNVFVQNRLVFMY 107
           ++Y  ++ ++   G     + G  +HA++ K                  + V N LV MY
Sbjct: 9   LNYAHLSGLLARCGRAGDLRLGTALHAVVAKNPAHFRLCPHRSASLHHVLAVWNSLVAMY 68

Query: 108 AICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
           A CG   DA + F  M  RD VSWNSLL   A    +   ++   +        D  T  
Sbjct: 69  ARCGRRGDAARAFDEMPLRDSVSWNSLLAASASAADALALLRRMLRAAPGAAACDHATLT 128

Query: 168 VVLSAC 173
            VLSAC
Sbjct: 129 TVLSAC 134


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 180/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC       +V+  ++ ++ ++WN+I+         E+ LK FS + ++   +D  ++
Sbjct: 383 YARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISL 442

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-D 124
            +++ A   +  F+  KQ+HA  FK G   +  + N L+  YA CG+++DA ++F  M +
Sbjct: 443 NNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGN 502

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD+ SW+SL++G A  GY++EA  LF +M+   I+P+  TF+ VL+AC   GF+++G  
Sbjct: 503 NRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCY 562

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           Y+ +M  +  + P R EH + IV LL RAG L EA +FI+ M   P   ++K LL+A ++
Sbjct: 563 YYSIMEPEYGIVPTR-EHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKM 621

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H + E+  R+A+ +L++ P+  A YVLL N+  A+  W++   ++  M   G++K PG S
Sbjct: 622 HNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKS 681

Query: 305 WV 306
           WV
Sbjct: 682 WV 683



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 94/175 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC +    +  +  +   + +SWN+I+  +   G   +AL  FSEMR +G+  D  T+
Sbjct: 282 YARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITV 341

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A         G+ +H+ + K+G D +V V N L+ MYA C  ++ A  VF  + +
Sbjct: 342 RGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKD 401

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           +D+V+WNS+L  CA H +  E ++LF  + K+E   D  +   VLSA    G+ +
Sbjct: 402 QDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFE 456



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 120/242 (49%), Gaps = 14/242 (5%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-IDYFTITSIVGAIGVIS 76
           ++  ++ ++ ISW +IIAGF   G   +AL+ F EM   G    + F   S   A G + 
Sbjct: 192 LFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVG 251

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            ++ G+Q+H L  K   D +++V   L  MYA C  ++ A   F  ++  DLVSWNS++ 
Sbjct: 252 SWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVN 311

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQYFYLMR----N 191
             +  G   EA+ LF +M+ + ++PDG T   +L AC     +  G L + YL++     
Sbjct: 312 AYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDG 371

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
           D S+         +++ +  R   L+ A    + + ++     + ++L+AC  H + E  
Sbjct: 372 DVSV-------CNSLLSMYARCSDLSSAMDVFHEI-KDQDVVTWNSILTACAQHNHPEEV 423

Query: 252 VR 253
           ++
Sbjct: 424 LK 425



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 1/161 (0%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           RN +SW ++IA     G    AL  FS M ++G   D F + S V A   +     G+Q+
Sbjct: 98  RNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQV 157

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA   K    S++ VQN LV MY+  G ++D   +F  + ++DL+SW S++ G A  G+ 
Sbjct: 158 HAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFE 217

Query: 145 REAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            EA+Q+F +M  +    P+   F     AC   G  + G Q
Sbjct: 218 MEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQ 258


>gi|297795265|ref|XP_002865517.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311352|gb|EFH41776.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 396

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 174/303 (57%), Gaps = 11/303 (3%)

Query: 14  DFQNVYSSVRT---RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFTITSIV 69
           +F+   S  RT   R+ ++WNA+I GF   G  E+A+  F +M + G+ + +  T  S +
Sbjct: 53  EFEEALSLFRTMPERSVVTWNAVIGGFSQTGQNEEAVNTFVDMLREGLVLPNESTFPSTI 112

Query: 70  GAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--R 126
            AI  I+    GK +HA   K +G   NVFV N L+  Y+ CG + D+   F+ + E  R
Sbjct: 113 TAISNIASHGAGKSIHACAIKFLGKRFNVFVGNSLISFYSKCGNMEDSLLAFNKLQEEQR 172

Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQK-TEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++VSWNS++ G AH+G   EAV +FE+M K T +KP+  T L +L AC HAG I +G  Y
Sbjct: 173 NIVSWNSMIWGYAHNGRGEEAVAMFEKMIKDTNLKPNNVTLLGLLFACNHAGLIQEGYTY 232

Query: 186 FYLMRNDASLEPP--RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           F    ND   +P   + EHY  +V +L R+G   EAE  I SM  +PG   +KALL  CQ
Sbjct: 233 FNKAVNDYD-DPNLIQPEHYACMVDMLSRSGRFKEAEELIKSMPLDPGIGFWKALLGGCQ 291

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
           +H N+ +A  +A ++L++ P D + YV+LSN   A + W D   IR  M   G+++  G 
Sbjct: 292 IHSNKRLAKLAASKILEMDPRDVSSYVMLSNAYSALENWQDVSLIRRKMKETGLKRFTGC 351

Query: 304 SWV 306
           SW+
Sbjct: 352 SWI 354



 Score = 40.8 bits (94), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLF-E 152
           D N+     L+  Y       +A  +F +M ER +V+WN+++ G +  G + EAV  F +
Sbjct: 35  DPNIVSITNLISGYLKKHEFEEALSLFRTMPERSVVTWNAVIGGFSQTGQNEEAVNTFVD 94

Query: 153 QMQKTEIKPDGTTFLVVLSA 172
            +++  + P+ +TF   ++A
Sbjct: 95  MLREGLVLPNESTFPSTITA 114


>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
 gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
          Length = 581

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 176/305 (57%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C    D + V+  +  RN + W ++I+G+  LG  ++A+  F +M+  G+ +D 
Sbjct: 238 ISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDD 297

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            TI ++V +   +     G+ +HA     G    + V+N L+ MY+ CG IN A+++F  
Sbjct: 298 GTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEIFCG 357

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSACCHAGFIDK 181
           + +RD+ SW ++++G   +G   EA+ LF QM+ + ++ P+  TFL VL++C H G +++
Sbjct: 358 LTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGGLVEQ 417

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G  YF  M     L  PR EHY  +V LLGRA  L EAE FI +M   P   V+++LL A
Sbjct: 418 GFHYFQRMSMVYKL-APRIEHYGCMVDLLGRAKLLTEAEQFIKNMPIAPDVVVWRSLLFA 476

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+  G   +A   A+R+L+L P   A +VLLSNV   T  W D  ++RT M N  + K+P
Sbjct: 477 CRACGEVGLAEFVAERILELEPKKCAGHVLLSNVYATTSRWVDVNELRTSMDNSRMSKQP 536

Query: 302 GYSWV 306
           G S++
Sbjct: 537 GCSFI 541



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 2/179 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTR--NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           YS C      + V  S      + +SWN II+G+   G   +AL+ F +M +  + +D  
Sbjct: 138 YSSCSYPATARQVLDSAPQGACDTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDV 197

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T+ + + A       K G+  H+L+   G   N ++ + L+ MYA CG + DA KVF  M
Sbjct: 198 TLLNALVASAKAGKVKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGM 257

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            ER++V W S++ G    G  +EAV LF  MQ T +K D  T   V+S+C   G +D G
Sbjct: 258 HERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLG 316



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 7/177 (3%)

Query: 54  RQAG-IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           R +G + +D +++     A   +     G Q+H+L  K+G  S+ FV N L+ MY+ C  
Sbjct: 84  RHSGYVTLDNYSLNIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSY 143

Query: 113 INDANKVFSSMDER--DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
              A +V  S  +   D VSWN+++ G    G   +A+Q F QM K ++  D  T L  L
Sbjct: 144 PATARQVLDSAPQGACDTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNAL 203

Query: 171 SACCHAGFIDKG-LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
            A   AG +  G L +  ++ N A +        ++++ +  + G + +A    + M
Sbjct: 204 VASAKAGKVKVGRLCHSLVVVNGAGINCYMG---SSLISMYAKCGLVEDARKVFHGM 257


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 163/304 (53%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ Y+  ++     N++  +  +N ISWN +IA + N     +A+  F +M + G+  D 
Sbjct: 247 VVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDA 306

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            TI S++ A G +S    G+++H  I K     N+ ++N L+ MYA CG + +A  VF  
Sbjct: 307 VTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDK 366

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD+VSW S++      G   +AV LF +M  +   PD   F+ VLSAC H G +D+G
Sbjct: 367 MRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQG 426

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF +M     +  PR EH+  +V L GRAG + EA SFI  M   P   V+ ALLSAC
Sbjct: 427 RHYFRMMTEQYGI-VPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSAC 485

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH   +I + +A  +  L P     YVLLSN+      W D  ++R  M   GI+K PG
Sbjct: 486 RVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPG 545

Query: 303 YSWV 306
            S V
Sbjct: 546 ISNV 549



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 102/228 (44%), Gaps = 7/228 (3%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++     +N + +N +I  + N     +AL  F  M     + D++T   ++ A   +  
Sbjct: 93  IFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDN 152

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G Q+H  I K+G D+N+F+ N LV MY  CG + +A KV   M  RD+VSWNS++ G
Sbjct: 153 LRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAG 212

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A  G   +A+++ ++M    +  D  T   +    C+     + +QY + M     +  
Sbjct: 213 YAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL--ENVQYIHNMFE--RMTK 268

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSR---NPGPSVYKALLSAC 242
                +  ++ +       NEA S    M      P      +LL AC
Sbjct: 269 KNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPAC 316



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 111/268 (41%), Gaps = 40/268 (14%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C    + + V   +  R+ +SWN+++AG+   G  + AL+   EM    ++ D 
Sbjct: 179 VAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDA 238

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S+   +   S           +  + Y  N                      +F  
Sbjct: 239 GTMASLSPVVCYTS-----------LENVQYIHN----------------------MFER 265

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--CHAGFID 180
           M +++L+SWN ++    ++    EAV LF QM++  +KPD  T   +L AC    A F+ 
Sbjct: 266 MTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLG 325

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           + L  +       +L+P       A++ +  + G L EA    + M      S + +++S
Sbjct: 326 RRLHKYI---EKGNLQPNLLLE-NALLDMYAKCGCLEEARDVFDKMRLRDVVS-WTSMMS 380

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAI 268
           A    G    AV    ++LD   N  +I
Sbjct: 381 AYGRSGQGYDAVALFAKMLDSGQNPDSI 408



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)

Query: 102 RLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
           +L+  Y+  G  + A  +F    E+++V +N ++    ++    EA+ +F+ M      P
Sbjct: 76  KLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNP 135

Query: 162 DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY---TAIVGLLGRAGFLNE 218
           D  TF  VL AC     +  GLQ      +DA ++     +     A+V + G+ G L E
Sbjct: 136 DHYTFPCVLKACSGLDNLRVGLQV-----HDAIVKVGLDTNLFIGNALVAMYGKCGCLRE 190

Query: 219 AESFINSM 226
           A   ++ M
Sbjct: 191 ARKVLDQM 198


>gi|56201767|dbj|BAD73217.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|56201874|dbj|BAD73324.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|125569384|gb|EAZ10899.1| hypothetical protein OsJ_00742 [Oryza sativa Japonica Group]
          Length = 569

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 168/302 (55%), Gaps = 6/302 (1%)

Query: 9   CDSSLD----FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           CD +LD     + +  +V   N +SW+A+I GF + G  ++AL+ F  M+Q  +  +  T
Sbjct: 230 CDKALDVLAQMEQIGGTV-APNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPNVVT 288

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + +++ A   +   + G+++H    K   D +  V+N L+ MYA CG ++ A KVF  M 
Sbjct: 289 MATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMK 348

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RDL+SWNS+L G   HG   EA+ LF  M    ++PDG TF+ VLSAC HAG + +G +
Sbjct: 349 TRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRR 408

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M     + P   EHYT +V LLGRAG L +A   + +M   P   V+ ALL++C++
Sbjct: 409 LFDRMVRAHKISPSM-EHYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSCRI 467

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HG+  +A  +   VL         ++L++N+      WD++  +R +    G+RK PG S
Sbjct: 468 HGDAAMAEATIANVLQSEDQSTGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNPGQS 527

Query: 305 WV 306
           W+
Sbjct: 528 WI 529



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 85/172 (49%), Gaps = 3/172 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + V+  ++TR+ ISWN+++AG+   G  ++AL  F++M  A ++ D  T 
Sbjct: 331 YAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTF 390

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQ-NRLVFMYAICGAINDANKVFSSMD 124
            +++ A G      EG+++   + +    S        +V++    G + DA+++  +M 
Sbjct: 391 VAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMP 450

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV-LSACC 174
            R DL  W +LL  C  HG +  A      + ++E +  G   L+  L A C
Sbjct: 451 VRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLITNLYAMC 502



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 80/171 (46%), Gaps = 5/171 (2%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS--GFKEGKQ 83
           + ++W A+++     G     L+ F EM+++G + +  ++   + A          +GK 
Sbjct: 109 DAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGKA 168

Query: 84  MHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           +H   + K      +FV N L+ MY   G ++DA K F     ++ V+WN+L+   A   
Sbjct: 169 IHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAAR 228

Query: 143 YSREAVQLFEQMQKT--EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
              +A+ +  QM++    + P+  ++  V+     +G  D+ L+ F  M+ 
Sbjct: 229 LCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQ 279



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 62/196 (31%)

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD------------------- 124
           +HA    +G  +   V  +++  Y+  G   DA +VF +M                    
Sbjct: 30  VHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSSGC 89

Query: 125 -----------------ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
                              D V+W +LL   A  G   + +QLF +MQ++  + +  +  
Sbjct: 90  DPDAARDAFARMAAAGARPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMA 149

Query: 168 VVLSACCHAG-------------FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214
           V LSAC +AG              + KGL + YL   +            +++ + G+ G
Sbjct: 150 VALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTN------------SLICMYGKLG 197

Query: 215 FLNEA-ESFINSMSRN 229
            +++A ++F ++ ++N
Sbjct: 198 EMDDAKKAFRDATAKN 213


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 180/304 (59%), Gaps = 4/304 (1%)

Query: 6   YSRCDSSLDFQNVYSSV-RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y +C+   D + ++S +   R+++SWNA+I+G+ + G   +A+     M Q G  +D FT
Sbjct: 603 YGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFT 662

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + +++ A   ++  + G ++HA   +   ++ V V + LV MYA CG I+ A++ F  M 
Sbjct: 663 LATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMP 722

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            R++ SWNS++ G A HG+  +A++LF QM++    PD  TF+ VLSAC H G +D+G +
Sbjct: 723 VRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFE 782

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           +F  M     L  PR EH++ +V LLGRAG + + E FI +M  NP   +++ +L AC  
Sbjct: 783 HFKSMGEVYEL-APRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCR 841

Query: 245 HGNR--EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
             +R  E+  R+AK +++L P +   YVLLSN+  A   W+D  + R  M N  ++K+ G
Sbjct: 842 ANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAG 901

Query: 303 YSWV 306
            SWV
Sbjct: 902 CSWV 905



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 6/172 (3%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  RN ++ N ++ G      GE+A K F EM+   ++I+  +   ++ A    S 
Sbjct: 307 IFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDL-VEINASSYAVLLSAFTEFSN 365

Query: 78  FKEGK----QMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
            KEGK    ++HA LI     D  + + N LV +YA C AI++A  +F  M  +D VSWN
Sbjct: 366 LKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWN 425

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           S++ G  H+    EAV  F  M++  + P   + +  LS+C   G+I  G Q
Sbjct: 426 SIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQ 477



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 119/236 (50%), Gaps = 3/236 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C++  + ++++  + +++ +SWN+II+G  +    E+A+ CF  MR+ G+    F++
Sbjct: 400 YAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSV 459

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + +   +     G+Q+H    K G D +V V N L+ +YA    + +  KVF  M E
Sbjct: 460 ISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPE 519

Query: 126 RDLVSWNSLLLGCAHHGYS-REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            D VSWNS +   A    S  +A++ F +M +   KP+  TF+ +LSA      ++ G Q
Sbjct: 520 YDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQ 579

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
              L+   +  +    E+   ++   G+   + + E   + MS       + A++S
Sbjct: 580 IHALILKHSVADDNAIEN--TLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMIS 633



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 105/198 (53%), Gaps = 13/198 (6%)

Query: 6   YSRCDSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI---- 60
           YS C +S+D  + V+  ++ +   SWN+II+ +C  G    A K FS M++   ++    
Sbjct: 187 YSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRP 246

Query: 61  DYFTITSIVGAIG--VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           + +T  S+V      V  G    +QM A I K  +  +++V + LV  +A  G I+ A  
Sbjct: 247 NEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKM 306

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           +F  MD+R+ V+ N L++G A      EA ++F++M K  ++ + +++ V+LSA      
Sbjct: 307 IFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEM-KDLVEINASSYAVLLSAFTEFSN 365

Query: 179 IDKGLQ-----YFYLMRN 191
           + +G +     + YL+RN
Sbjct: 366 LKEGKRKGQEVHAYLIRN 383



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 12/276 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           + R  + +  Q ++  +  +N +SW+ +++G+   G  ++A   F  +  AG+  +++ I
Sbjct: 84  FVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAI 143

Query: 66  TSIVGAIGVI--SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA-INDANKVFSS 122
            S + A   +  +  K G ++H LI K  Y S++ + N L+ MY+ C A I+DA +VF  
Sbjct: 144 GSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEE 203

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEI--KPDGTTFLVVLSACCHAGF 178
           +  +   SWNS++      G +  A +LF  MQ+  TE+  +P+  TF  +++  C    
Sbjct: 204 IKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVAC--SL 261

Query: 179 IDKGLQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYK 236
           +D GL     M           + Y  +A+V    R G ++ A+     M      ++  
Sbjct: 262 VDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNG 321

Query: 237 ALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLL 272
            ++   + H   E A +  K + DL   + + Y +L
Sbjct: 322 LMVGLARQHQGEE-AAKIFKEMKDLVEINASSYAVL 356



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 51/99 (51%)

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           ++  Q+H  I+K G  S+VF  N LV ++   G +  A K+F  M +++LVSW+ L+ G 
Sbjct: 56  EDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGY 115

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           A +G   EA  LF  +    + P+       L AC   G
Sbjct: 116 AQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELG 154


>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
          Length = 514

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 184/304 (60%), Gaps = 7/304 (2%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           +C      + ++     ++ ++WNA+I+G+ N G  ++AL  F EMR AG   D  TI S
Sbjct: 187 KCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILS 246

Query: 68  IVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQ----NRLVFMYAICGAINDANKVFSS 122
           ++ A  V+   + GK++H  I +     S+++V     N L+ MYA CG+I+ A +VF  
Sbjct: 247 LLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRG 306

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + +RDL +WN+L++G A H ++  ++++FE+MQ+ ++ P+  TF+ V+ AC H+G +D+G
Sbjct: 307 VKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEG 365

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF LMR+  ++EP   +HY  +V +LGRAG L EA  F+ SM   P   V++ LL AC
Sbjct: 366 RKYFSLMRDMYNIEP-NIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGAC 424

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +++GN E+   + +++L +  ++   YVLLSN+  +T  WD    +R +  +  ++K  G
Sbjct: 425 KIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTG 484

Query: 303 YSWV 306
            S +
Sbjct: 485 VSLI 488



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 119/279 (42%), Gaps = 14/279 (5%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           N ++ G       E+ +  ++EM + G+  D +T T ++ A   +     G   H  + +
Sbjct: 47  NHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVR 106

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
            G+  N +V+N L+  +A CG +  A+++F    +   V+W+S+  G A  G   EA++L
Sbjct: 107 HGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRL 166

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLL 210
           F++M       D   + V+++ C     +D   + F     D   E         I G +
Sbjct: 167 FDEMPYK----DQVAWNVMITGCLKCKEMDSARELF-----DRFTEKDVVTWNAMISGYV 217

Query: 211 GRAGFLNEAESFINSM---SRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267
              G+  EA      M     +P      +LLSAC V G+ E   R    +L+      +
Sbjct: 218 N-CGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSS 276

Query: 268 IYVLLSNVSKATDCWDDAGDI-RTLMYNRGIRKKPGYSW 305
           IYV     +   D +   G I R +   RG++ +   +W
Sbjct: 277 IYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTW 315



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 92  GYDSNVFVQNRLVFM--YAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
           G  SN+ V   L++    ++ GA+  A+K+F  + + D+   N +L G A      + V 
Sbjct: 5   GLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVS 64

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           L+ +M+K  + PD  TF  VL AC    +   G  +
Sbjct: 65  LYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAF 100



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 85/198 (42%), Gaps = 5/198 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S      V+  V+ R+  +WN +I G   L   E +++ F EM++  +  + 
Sbjct: 288 IDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLA-LHHAEGSIEMFEEMQRLKVWPNE 346

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T   ++ A        EG++  +L+  +   + N+     +V M    G + +A     
Sbjct: 347 VTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVE 406

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           SM  E + + W +LL  C  +G         E++    ++ D +   V+LS    +    
Sbjct: 407 SMKIEPNAIVWRTLLGACKIYGNVELGKYANEKL--LSMRKDESGDYVLLSNIYASTGQW 464

Query: 181 KGLQYFYLMRNDASLEPP 198
            G+Q    M +D  ++ P
Sbjct: 465 DGVQKVRKMFDDTRVKKP 482


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 180/302 (59%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC       +V+  ++ ++ ++WN+I+         E+ LK FS + ++   +D  ++
Sbjct: 400 YARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISL 459

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-D 124
            +++ A   +  F+  KQ+HA  FK G   +  + N L+  YA CG+++DA ++F  M +
Sbjct: 460 NNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGN 519

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RD+ SW+SL++G A  GY++EA  LF +M+   I+P+  TF+ VL+AC   GF+++G  
Sbjct: 520 NRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCY 579

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           Y+ +M  +  + P R EH + IV LL RAG L EA +FI+ M   P   ++K LL+A ++
Sbjct: 580 YYSIMEPEYGIVPTR-EHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKM 638

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H + E+  R+A+ +L++ P+  A YVLL N+  A+  W++   ++  M   G++K PG S
Sbjct: 639 HNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKS 698

Query: 305 WV 306
           WV
Sbjct: 699 WV 700



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 94/175 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC +    +  +  +   + +SWN+I+  +   G   +AL  FSEMR +G+  D  T+
Sbjct: 299 YARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITV 358

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A         G+ +H+ + K+G D +V V N L+ MYA C  ++ A  VF  + +
Sbjct: 359 RGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKD 418

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           +D+V+WNS+L  CA H +  E ++LF  + K+E   D  +   VLSA    G+ +
Sbjct: 419 QDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFE 473



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 1/183 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC +    + V+  +  RN +SW ++IA     G    AL  FS M ++G   D 
Sbjct: 93  ITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQ 152

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F + S V A   +     G+Q+HA   K    S++ VQN LV MY+  G ++D   +F  
Sbjct: 153 FALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFER 212

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDK 181
           + ++DL+SW S++ G A  G+  EA+Q+F +M  +    P+   F     AC   G  + 
Sbjct: 213 IKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEY 272

Query: 182 GLQ 184
           G Q
Sbjct: 273 GEQ 275



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 120/242 (49%), Gaps = 14/242 (5%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-IDYFTITSIVGAIGVIS 76
           ++  ++ ++ ISW +IIAGF   G   +AL+ F EM   G    + F   S   A G + 
Sbjct: 209 LFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVG 268

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            ++ G+Q+H L  K   D +++V   L  MYA C  ++ A   F  ++  DLVSWNS++ 
Sbjct: 269 SWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVN 328

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQYFYLMR----N 191
             +  G   EA+ LF +M+ + ++PDG T   +L AC     +  G L + YL++     
Sbjct: 329 AYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDG 388

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
           D S+         +++ +  R   L+ A    + + ++     + ++L+AC  H + E  
Sbjct: 389 DVSV-------CNSLLSMYARCSDLSSAMDVFHEI-KDQDVVTWNSILTACAQHNHPEEV 440

Query: 252 VR 253
           ++
Sbjct: 441 LK 442



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 7/126 (5%)

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDS-------NVFVQNRLVFMYAICGAINDANK 118
            ++V A   +    +G+++H  +      S       N  + N L+ MY  C A + A +
Sbjct: 48  AALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQ 107

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
           VF  M  R+ VSW S++     +G + +A+ LF  M ++    D       + AC   G 
Sbjct: 108 VFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGD 167

Query: 179 IDKGLQ 184
           +  G Q
Sbjct: 168 VGTGRQ 173


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/289 (35%), Positives = 168/289 (58%), Gaps = 2/289 (0%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVISG 77
           + ++  RN +SWNA++AG+        AL+ F  M   A +  +  T++S++     +S 
Sbjct: 189 FRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSA 248

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G+Q+H    K+    ++ V   L+ MY  CG ++DA K+F  M  +D+V+WN+++ G
Sbjct: 249 LGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISG 308

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG  R+A++LFE+M+   + PD  T L VL+AC H G  D G+Q F  M+   ++E 
Sbjct: 309 YAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIE- 367

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P+ +HY+ +V LL RAG L  A + I+SM   P PS Y  LL+AC+V+ N E A  +A++
Sbjct: 368 PQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARK 427

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++  P +   YV L+N+    + WDD   +R  M +  + K PGYSW+
Sbjct: 428 LIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWM 476



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 108/247 (43%), Gaps = 17/247 (6%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+S++  R+  SWN +++G    G+ E+A   F  M  A   + +  + +   + G +  
Sbjct: 94  VFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAM-PARNAVSWNAMVAARASSGDMGA 152

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            +       L       ++  +   +V  Y   G +  A + F +M  R+LVSWN+++ G
Sbjct: 153 AEN------LFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAG 206

Query: 138 CAHHGYSREAVQLFEQMQKTEI-KPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
              +  + +A+++F+ M +  I +P+ +T   VL  C +   +  G Q      +   ++
Sbjct: 207 YVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQV-----HQWCMK 261

Query: 197 PPRAEHYTAIVGLLG---RAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            P     T    LL    + G L++A    + M        + A++S    HG    A++
Sbjct: 262 LPLGRSITVGTSLLSMYCKCGDLDDACKLFDEM-HTKDIVAWNAMISGYAQHGGGRKAIK 320

Query: 254 SAKRVLD 260
             +++ D
Sbjct: 321 LFEKMKD 327



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 40/66 (60%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D   ++  + T++ ++WNA+I+G+   G G +A+K F +M+  G+  D+ T+
Sbjct: 278 YCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITL 337

Query: 66  TSIVGA 71
            +++ A
Sbjct: 338 LAVLTA 343



 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 42/176 (23%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM------ 154
           N L+  +  CG I+ A +VFS+M  RD+ SWN+++ G + +G   EA  +F  M      
Sbjct: 76  NTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAV 135

Query: 155 ----------------------QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--R 190
                                 +    K D   +  ++S     G + K ++YF  M  R
Sbjct: 136 SWNAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVR 195

Query: 191 NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN----PGPSVYKALLSAC 242
           N  S        + A+V    +     +A     +M  +    P PS   ++L  C
Sbjct: 196 NLVS--------WNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGC 243


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 99/281 (35%), Positives = 173/281 (61%), Gaps = 1/281 (0%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N +S  ++I G+      E+AL  F E+R+ G++ + FT +S++    + +  ++G Q+H
Sbjct: 287 NVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLH 346

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
           A + K    S+ FV + L+ MY  CG I+ + ++F  ++    ++WN+ +   A HG+ R
Sbjct: 347 AEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGR 406

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205
           EA++ F++M  + I+P+  TF+ +L+AC HAG +D+GL+YFY M++   +E P+ EHY+ 
Sbjct: 407 EAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIE-PKGEHYSC 465

Query: 206 IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265
           I+ + GRAG L+EAE FI  M   P    + +LL AC++ GN+E+   +A  ++ L P++
Sbjct: 466 IIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEPDN 525

Query: 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             ++V LS +  +   W+D   +R LM +  I+K PG+SWV
Sbjct: 526 TGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWV 566



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 134/281 (47%), Gaps = 15/281 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFT 64
           YS+    ++   V+  +  ++ ++W A+I G+   G+ E A+  F +MR+ G +  D   
Sbjct: 164 YSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHV 223

Query: 65  ITSIVGAIGVISGFKEG---KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           + S++ A G   G K+G   + +H+ + K G++  V V+N L  MYA    +++A +V  
Sbjct: 224 LCSVLSASG---GLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVV- 279

Query: 122 SMDERDL--VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
            +D+  L  VS  SL+ G        +A+ +F ++++  ++P+  TF  ++  C     +
Sbjct: 280 KIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALL 339

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           ++G Q    +   + +        + ++ + G+ G ++ +      +  +   + + A +
Sbjct: 340 EQGAQLHAEVIKTSLISDSFVS--STLLDMYGKCGLISLSIQLFKEIEYHTDIA-WNAAI 396

Query: 240 SACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
           +    HG+   A+R+  R+    + PN      LL+  S A
Sbjct: 397 NVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHA 437



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 1/171 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS C        ++ ++   N +SW  +++G         AL  FS M +AG+    
Sbjct: 60  ITMYSHCADVPSAVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQ 119

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F ++S   A   ++    G Q+H +  ++G+D+ +FV + L  MY+  G + +A +VF  
Sbjct: 120 FALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQ 179

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSA 172
           M ++D V+W +++ G A +G    AV  F  M++   +  D      VLSA
Sbjct: 180 MPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSA 230



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 6/169 (3%)

Query: 6   YSRCD-SSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y +C   SL  Q ++  +     I+WNA I      G G +A++ F  M  +GI  ++ T
Sbjct: 368 YGKCGLISLSIQ-LFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHIT 426

Query: 65  ITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
             S++ A        EG K  +++    G +      + ++ MY   G +++A K    M
Sbjct: 427 FVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEM 486

Query: 124 DER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             + +   W SLL  C   G         + M K E  PD T   V LS
Sbjct: 487 PVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLE--PDNTGVHVSLS 533



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 73  GVISGFKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
           G     + G+ +HA L+      ++ F+ N L+ MY+ C  +  A ++F +M   +LVSW
Sbjct: 28  GRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPNLVSW 87

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
            +L+ G   +   R+A+  F  M +  + P
Sbjct: 88  TTLVSGLTQNSMHRDALAAFSSMCRAGLVP 117


>gi|222640155|gb|EEE68287.1| hypothetical protein OsJ_26530 [Oryza sativa Japonica Group]
          Length = 483

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 172/307 (56%), Gaps = 8/307 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---D 59
           I  YSRC        V+ ++ T+N +SW A+I+GF      E  L  F+ MR +     D
Sbjct: 113 ITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISGFALHNRVEPCLHLFASMRLSSCKPND 172

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           I + T+ S+     +++    GK +HAL  ++G+ S V V N L+ MYA CG I++A  +
Sbjct: 173 ITFATLFSVCTNHALLA---LGKSVHALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQSI 229

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  +  +DLVSWN+++ GC+ +G ++  + L ++M++  I PD  +FL VLS+C HA  +
Sbjct: 230 FGFIACKDLVSWNAMIFGCSQYGLAKHCLDLLKEMERQHIVPDALSFLGVLSSCRHARLV 289

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           ++G   F  M        P  +HY+ +V LLGRAG L EA   I +MS  P   ++ +LL
Sbjct: 290 EEGRHCFKTMIEHGI--KPGLDHYSCMVDLLGRAGLLEEAWDLIQTMSIPPNAVIWGSLL 347

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
            +C+VHGN  I +++A+  L L P   A ++ L+N+     CW D   +R  M  RG++ 
Sbjct: 348 GSCRVHGNISIGIQAAEHRLKLEPGCAATHIQLANLYATIGCWSDVARVRMAMKARGLKT 407

Query: 300 KPGYSWV 306
             G SW+
Sbjct: 408 NIGCSWI 414



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 20/189 (10%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F +G Q+H L+ K+G DS VF+ + L+ +Y+ C  +  +  VF +M  ++ VSW +++ G
Sbjct: 87  FTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISG 146

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A H      + LF  M+ +  KP+  TF  + S C +   +  G       ++  +L+ 
Sbjct: 147 FALHNRVEPCLHLFASMRLSSCKPNDITFATLFSVCTNHALLALG-------KSVHALQM 199

Query: 198 PRAEH-----YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
               H       A++ +  + G ++EA+S    ++     S + A++  C  +G      
Sbjct: 200 RMGFHSYVHVSNALLSMYAKCGCIDEAQSIFGFIACKDLVS-WNAMIFGCSQYG------ 252

Query: 253 RSAKRVLDL 261
             AK  LDL
Sbjct: 253 -LAKHCLDL 260


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 174/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C S  D   V+  +  +  + WN+IIAG+   G  E+AL  + EMR +G+ +D+
Sbjct: 275 IDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDH 334

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT + I+     ++     KQ+HA + + G+  +V     LV  Y+  G ++DA  VF  
Sbjct: 335 FTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDR 394

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  R+++SWN+L+ G  +HG+  EA+ +FE+M +  + P+  TFL VLSAC  +G  ++G
Sbjct: 395 MSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFERG 454

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + F  M  D  ++ PRA H+  ++ LLGR G L+EA + I      P  +++ ALL AC
Sbjct: 455 WEIFQSMTRDHKVK-PRAMHFACMIELLGREGLLDEAYALIRKAPFQPTANMWAALLRAC 513

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN E+   +A+++  + P   + Y++L N+  ++    +A D+   +  +G+R  P 
Sbjct: 514 RVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLRMLPA 573

Query: 303 YSWV 306
            SW+
Sbjct: 574 CSWI 577



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 143/277 (51%), Gaps = 7/277 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +L + +C   +D   ++  +  RN +SW  II+G+ + G+  +A + F  MR+   D   
Sbjct: 174 LLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGP 233

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  +++ A   +     G+Q+H+   K G   ++FV   L+ MY+ CG++ DA+ VF  
Sbjct: 234 RTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDE 293

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ++ +V WNS++ G A HGYS EA+ L+ +M+ + +K D  TF +++  C     + + 
Sbjct: 294 MPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARA 353

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            Q +  L+RN   L+       TA+V    + G +++A    + MS     S + AL++ 
Sbjct: 354 KQVHASLVRNGFGLDVVAN---TALVDFYSKWGKVDDARHVFDRMSCRNIIS-WNALIAG 409

Query: 242 CQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVS 276
              HG+ E A+   +++L   + PN      +LS  S
Sbjct: 410 YGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACS 446



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 24/169 (14%)

Query: 55  QAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN 114
           + G  + Y T  +++ A   +   +  K++   +   G++ + +++NR++ M+  CG + 
Sbjct: 125 EDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMI 184

Query: 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
           DA ++F  M  R+ VSW +++ G    G   EA +LF  M++                  
Sbjct: 185 DACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREE----------------- 227

Query: 175 HAGFIDKGLQYFYLM-RNDASLE---PPRAEHYTAIVGLLGRAGFLNEA 219
              F D G + F  M R  A LE   P R  H  AI   LG+  F++ A
Sbjct: 228 ---FYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCA 273


>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
 gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 184/304 (60%), Gaps = 7/304 (2%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           +C      + ++     ++ ++WNA+I+G+ N G  ++AL  F EMR AG   D  TI S
Sbjct: 221 KCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILS 280

Query: 68  IVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQ----NRLVFMYAICGAINDANKVFSS 122
           ++ A  V+   + GK++H  I +     S+++V     N L+ MYA CG+I+ A +VF  
Sbjct: 281 LLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRG 340

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + +RDL +WN+L++G A H ++  ++++FE+MQ+ ++ P+  TF+ V+ AC H+G +D+G
Sbjct: 341 VKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEG 399

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +YF LMR+  ++EP   +HY  +V +LGRAG L EA  F+ SM   P   V++ LL AC
Sbjct: 400 RKYFSLMRDMYNIEP-NIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGAC 458

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +++GN E+   + +++L +  ++   YVLLSN+  +T  WD    +R +  +  ++K  G
Sbjct: 459 KIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTG 518

Query: 303 YSWV 306
            S +
Sbjct: 519 VSLI 522



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 119/279 (42%), Gaps = 14/279 (5%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           N ++ G       E+ +  ++EM + G+  D +T T ++ A   +     G   H  + +
Sbjct: 81  NHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVR 140

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
            G+  N +V+N L+  +A CG +  A+++F    +   V+W+S+  G A  G   EA++L
Sbjct: 141 HGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRL 200

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLL 210
           F++M       D   + V+++ C     +D   + F     D   E         I G +
Sbjct: 201 FDEMPYK----DQVAWNVMITGCLKCKEMDSARELF-----DRFTEKDVVTWNAMISGYV 251

Query: 211 GRAGFLNEAESFINSM---SRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267
              G+  EA      M     +P      +LLSAC V G+ E   R    +L+      +
Sbjct: 252 N-CGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSS 310

Query: 268 IYVLLSNVSKATDCWDDAGDI-RTLMYNRGIRKKPGYSW 305
           IYV     +   D +   G I R +   RG++ +   +W
Sbjct: 311 IYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTW 349



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 2/106 (1%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFM--YAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           KQ+HA +   G  SN+ V   L++    ++ GA+  A+K+F  + + D+   N +L G A
Sbjct: 29  KQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSA 88

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
                 + V L+ +M+K  + PD  TF  VL AC    +   G  +
Sbjct: 89  QSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAF 134



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 85/198 (42%), Gaps = 5/198 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S      V+  V+ R+  +WN +I G   L   E +++ F EM++  +  + 
Sbjct: 322 IDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLA-LHHAEGSIEMFEEMQRLKVWPNE 380

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T   ++ A        EG++  +L+  +   + N+     +V M    G + +A     
Sbjct: 381 VTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVE 440

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
           SM  E + + W +LL  C  +G         E++    ++ D +   V+LS    +    
Sbjct: 441 SMKIEPNAIVWRTLLGACKIYGNVELGKYANEKL--LSMRKDESGDYVLLSNIYASTGQW 498

Query: 181 KGLQYFYLMRNDASLEPP 198
            G+Q    M +D  ++ P
Sbjct: 499 DGVQKVRKMFDDTRVKKP 516


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 182/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y++     D + V+  +  R+   WNA++ G+     G++AL+ F +M++A ++ D 
Sbjct: 295 IVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDD 354

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ +++ A   +   + G  +H  I +     +V +   LV MY+ CG I  A +VF  
Sbjct: 355 ITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKE 414

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + E++ ++W +++ G A+HG++  A++ F++M +  ++PD  TF+ VLSACCHAG + +G
Sbjct: 415 IPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEG 474

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            ++F LM +   LE  + +HY+ +V LLGRAG+L+EAE  +N+M   P   V+ AL  AC
Sbjct: 475 QEFFSLMVSKYHLE-RKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFAC 533

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN  +  ++A ++++L P D  IYVLL+N+    +    A  +R +M + G+ K PG
Sbjct: 534 RMHGNITLGEKAAMKLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPG 593

Query: 303 YSWV 306
            S +
Sbjct: 594 CSCI 597



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 129/286 (45%), Gaps = 37/286 (12%)

Query: 9   CDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITS 67
           C S  + + ++     R+ +SWN +I G+   G   +AL+ F  M   G +  D  T+  
Sbjct: 168 CSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIG 227

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           +V     +   + G+++H  +   G    V + N ++ MY  CG +  A  VF  +D++ 
Sbjct: 228 VVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKT 287

Query: 128 LVSWNSLLLGCAHHGY-------------------------------SREAVQLFEQMQK 156
           +VSW ++++G A  G                                 +EA++LF  MQ+
Sbjct: 288 IVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQE 347

Query: 157 TEIKPDGTTFLVVLSACCHAGFIDKGL-QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF 215
             ++PD  T + +LSAC   G ++ G+  + Y+ R   SL        T +V +  + G 
Sbjct: 348 AMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLG---TNLVDMYSKCGN 404

Query: 216 LNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDL 261
           + +A      +      + + A++S    HG+ ++A++  +R+++L
Sbjct: 405 IEKAIRVFKEIPEKNALT-WTAMISGLANHGHADVAIKYFQRMIEL 449



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 1/112 (0%)

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D+ T   ++ A   +     G  +   +  +G+ ++VFV N  +   A+C ++ +A K+F
Sbjct: 119 DHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLF 178

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLS 171
                RDLVSWN+L+ G    G  REA+++F +M     + PD  T + V+S
Sbjct: 179 DGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVS 230


>gi|297851320|ref|XP_002893541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339383|gb|EFH69800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 520

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/295 (35%), Positives = 179/295 (60%), Gaps = 3/295 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLG-SGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           D + ++++ + ++ + +NA++ GF     + ++++  +  M++A    +  T  S++GA 
Sbjct: 224 DAEEIFNTTKVKDIVVYNAMVEGFSRSAETAKRSVDMYISMQRASFHPNISTFASVIGAC 283

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
            V++  + G+Q+HA I K G  +++ + + L+ MYA CG I+DA +VF  M E+++ SW 
Sbjct: 284 SVLTCHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGIDDARRVFDQMQEKNVFSWT 343

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           S++ G   +G   EA++LF +M++  I+P+  TFL VLSAC H+G +DKG + F  M+ D
Sbjct: 344 SMIDGYGKNGNPEEALELFTRMKEFHIEPNYVTFLGVLSACSHSGLVDKGYEIFESMQRD 403

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            S++ P+ EHY  +V L+GRAG LN+A  F+ +M       V+ ALLS+C +HGN ++A 
Sbjct: 404 YSMK-PKMEHYACMVDLMGRAGELNKAFEFVRAMPERHNSDVWAALLSSCNLHGNVDLAS 462

Query: 253 RSAKRVLDLWPND-PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +A  +  L  +  P  Y+ LSNV  + D WD+   IR +M  R I K  G SW 
Sbjct: 463 IAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKVRRISKNIGRSWT 517



 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 55/97 (56%)

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S  K G+++HA I K G+  ++ +  +L+ ++  CG ++ A +VF  + +  L ++N ++
Sbjct: 48  SAPKAGQKIHADIIKTGFIPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMI 107

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            G   HG+ +E + L + +  +  K DG T  +VL A
Sbjct: 108 SGYLKHGFLKELLLLVQWISYSGEKADGYTLSMVLKA 144



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 9/123 (7%)

Query: 58  IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
           +++D   IT++V A  V SG  E  +    +F+   D NV     ++  Y   G + DA 
Sbjct: 171 VELDDVLITALVDAY-VKSGKLESART---VFETMKDENVVCCTSMISGYMNQGFVEDAE 226

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYS-REAVQLFEQMQKTEIKPDGTTFLVVLSAC--- 173
           ++F++   +D+V +N+++ G +    + + +V ++  MQ+    P+ +TF  V+ AC   
Sbjct: 227 EIFNTTKVKDIVVYNAMVEGFSRSAETAKRSVDMYISMQRASFHPNISTFASVIGACSVL 286

Query: 174 -CH 175
            CH
Sbjct: 287 TCH 289



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 69/140 (49%), Gaps = 4/140 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D + V+  ++ +N  SW ++I G+   G+ E+AL+ F+ M++  I+ +Y T 
Sbjct: 318 YAKCGGIDDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFHIEPNYVTF 377

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVFSSM 123
             ++ A        +G ++   + +  Y     +++   +V +    G +N A +   +M
Sbjct: 378 LGVLSACSHSGLVDKGYEIFESMQR-DYSMKPKMEHYACMVDLMGRAGELNKAFEFVRAM 436

Query: 124 DER-DLVSWNSLLLGCAHHG 142
            ER +   W +LL  C  HG
Sbjct: 437 PERHNSDVWAALLSSCNLHG 456


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 171/301 (56%), Gaps = 5/301 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      Q V+  +  +N +SW A++ G+C  G  E  ++ F E    G  +D ++ 
Sbjct: 309 YGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFRE----GKKVDTYSF 364

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ A   ++  ++GK++H    K     +V  ++ LV +YA CG I+ A ++F  M  
Sbjct: 365 GTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYRIFVRMSV 424

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+L++WNS++ G A +G   E  QLF++M +  I+PD  +F+ VL AC HAG +D+G +Y
Sbjct: 425 RNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSHAGLVDQGKKY 484

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M     ++P   EHY  ++ LLGRAG L EAE+ I + +    PS++  LL AC   
Sbjct: 485 FAAMTEVYEIKPG-IEHYNCMIDLLGRAGLLEEAENLIENANCRDEPSLWTVLLGACAAS 543

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            +   A R AK+ ++L P+    YV L+NV +A   WDDA  IR LM  RG+ K PG SW
Sbjct: 544 PHSATAERIAKKAVELKPDHHLSYVYLANVYRAVGRWDDAVKIRNLMTKRGVGKMPGTSW 603

Query: 306 V 306
           +
Sbjct: 604 I 604



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 119/239 (49%), Gaps = 4/239 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  ++ ISW ++I G+  +   +++L+ F EM   GI+ + FT+++++ A   +
Sbjct: 116 RRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGL 175

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + GK  H ++   G+D N  +   L+ MY    A++DA  VF  + + D + W S++
Sbjct: 176 GDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSII 235

Query: 136 LGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
                +    +A+  F  M +K  + PDG TF  VL+AC + G + +G +    +     
Sbjct: 236 SAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGL 295

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
                 E  +++V + G+   +N+++   + MS     S + ALL     +G+ E  +R
Sbjct: 296 SGNVFVE--SSLVDMYGKCRLVNQSQCVFDRMSVKNLVS-WTALLGGYCQNGDFESVIR 351



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 5/178 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFT 64
           Y R  +  D   V+  +   + I W +II+ F      ++AL  F  M R+ G+  D FT
Sbjct: 207 YGRNSAVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFT 266

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             +++ A G +   K+GK++HA +   G   NVFV++ LV MY  C  +N +  VF  M 
Sbjct: 267 FGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMS 326

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            ++LVSW +LL G   +G     +++F + +K     D  +F  VL AC     + +G
Sbjct: 327 VKNLVSWTALLGGYCQNGDFESVIRIFREGKKV----DTYSFGTVLRACAGLAAVRQG 380



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 102/243 (41%), Gaps = 34/243 (13%)

Query: 34  IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY 93
           I  +C  GS  +A+   + +    +    F   S++        F  G Q H+   K G 
Sbjct: 32  IIQYCKSGSLFEAIHVLNSIDWTRLSNKPFFYASLLQTCTKAVSFTHGIQFHSHAIKSGL 91

Query: 94  DSNVFVQNRLVFMYAICGA-INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
           D++ FV N L+ +Y   G  + +A +VF  +  +DL+SW S++ G       +++++LF 
Sbjct: 92  DTDRFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFL 151

Query: 153 QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--------------------RND 192
           +M    I+P+G T   V+ AC   G +  G  +  ++                    RN 
Sbjct: 152 EMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNS 211

Query: 193 A---------SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS----VYKALL 239
           A          L  P A  +T+I+    R    ++A  F  SM R  G S     +  +L
Sbjct: 212 AVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVL 271

Query: 240 SAC 242
           +AC
Sbjct: 272 TAC 274


>gi|414869047|tpg|DAA47604.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 694

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 103/293 (35%), Positives = 164/293 (55%), Gaps = 1/293 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D  N +SS+  ++ +SWN+++ G+ + G    ALK F  MR   I  D F +++ + +  
Sbjct: 351 DAYNCFSSLVFKDAVSWNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCS 410

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            ++  + G+Q+H+L+ + G+ SN FV + L+FMY+ CG + DA K F   D+   V WNS
Sbjct: 411 DLAVLRLGRQVHSLVVQSGFASNDFVSSSLIFMYSKCGVLGDARKSFEEADKSSSVPWNS 470

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G A HG ++    LF +M   E+  D  TF+ +++A  H G +D+G +    M    
Sbjct: 471 MMFGYAQHGQAQTVTDLFNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEILNTMETRY 530

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
            + P R EHY   V L GRAG L++A+  I SM   P   V+  LL AC++HGN E+A  
Sbjct: 531 KI-PMRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAIVWMTLLGACRIHGNMELASD 589

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            A+ +    P   + YVLLS++      W D   ++ +M NR + K PG+SW+
Sbjct: 590 VARHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQKVMRNRALSKIPGWSWI 642



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 1/177 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D + V+  +  RN +SWNAIIAG+ +     +A++ F EM++ G   D  T 
Sbjct: 136 YAKCGRLGDARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVGSVPDGTTF 195

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++  I     +   +Q+H  I K G    +   N  +  Y+ C A+ D+ K+F  ++ 
Sbjct: 196 AVLLATIAGPRWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQCDALADSRKIFDGIES 255

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLF-EQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           RDL+SWNS+L   A+HG   EA++ F   M+++ I+PD  +F   +S C   G  D+
Sbjct: 256 RDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEHGCDDQ 312



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 142/303 (46%), Gaps = 17/303 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           I  YS+CD+  D + ++  + +R+ ISWN+++  +   G  ++A++ F  M R++GI  D
Sbjct: 234 ITAYSQCDALADSRKIFDGIESRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPD 293

Query: 62  YFTITSIVGAIGVISGF----KEGKQMHALIFKIGYDSNVFVQNRLVFMY---AICGAIN 114
            ++ TS   AI V S      ++G+ +H+L+ K G +    V N ++ MY   A    + 
Sbjct: 294 MYSFTS---AISVCSEHGCDDQQGRSIHSLVIKFGLEGVTPVCNAMIAMYTRFADNCMME 350

Query: 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
           DA   FSS+  +D VSWNS+L G +HHG S +A++ F  M+   I+ D       L +C 
Sbjct: 351 DAYNCFSSLVFKDAVSWNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCS 410

Query: 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPS 233
               +  G Q   L+              ++++ +  + G L +A +SF  +   +  P 
Sbjct: 411 DLAVLRLGRQVHSLVVQSGFASNDFVS--SSLIFMYSKCGVLGDARKSFEEADKSSSVP- 467

Query: 234 VYKALLSACQVHGNREIAVRSAKRVLDLW-PNDPAIYVLLSNVSKATDCWDDAGDIRTLM 292
            + +++     HG  +        +LDL  P D   +V L          D+  +I   M
Sbjct: 468 -WNSMMFGYAQHGQAQTVTDLFNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEILNTM 526

Query: 293 YNR 295
             R
Sbjct: 527 ETR 529



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 7/190 (3%)

Query: 2   QILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           Q+LT          + V+  +   +  SWN+++A     G+   A +    M   G+   
Sbjct: 31  QLLTAYSATGLAAARRVFDEIPHPDAASWNSLLAAHVAAGAHRDAWRLLRAMHARGLAAS 90

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            F + S + +       + G Q+ +   + G   NVF  + L+ +YA CG + DA +VF 
Sbjct: 91  TFALGSALRSAAAARRPELGAQLQSFSVRCGLADNVFPASALLDVYAKCGRLGDARRVFD 150

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M  R++VSWN+++ G        EA++LF +MQ+    PDGTTF V+L+          
Sbjct: 151 GMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVGSVPDGTTFAVLLATIA------- 203

Query: 182 GLQYFYLMRN 191
           G +++ LMR 
Sbjct: 204 GPRWYSLMRQ 213


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/291 (37%), Positives = 162/291 (55%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  +  I+WNA+I G+   G     L+ + EM   G   D  T+  ++ +   +
Sbjct: 168 RKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHL 227

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                GK++   +   G+ SN F+ N LV MYA CG +  A  +F  M  + +VSW +++
Sbjct: 228 GALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAII 287

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G   HG    AV LF++M +  IKPDGT F+ VLSAC HAG  +KGL YF +M     L
Sbjct: 288 GGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGL 347

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
            P  AEHY+ +V LLGRAG LNEA   I SM      +++ ALL AC++H N E+A  + 
Sbjct: 348 RPG-AEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAF 406

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++V++L P +   YVLLSNV       +    +R LM  R ++K PG S+V
Sbjct: 407 EQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYV 457



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 122/255 (47%), Gaps = 9/255 (3%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           + +N++++G+      +  +  F EMR+ G++I+  T+  +V   G+      G  +H  
Sbjct: 79  VCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGF 138

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
             K G D +  V N L+ MY   G I+   K+F  M  + L++WN+++ G A +G +   
Sbjct: 139 CVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNV 198

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           ++L+++M+     PD  T + VLS+C H G +  G +    M        P   +  A+V
Sbjct: 199 LELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNN--ALV 256

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSV--YKALLSACQVHGNREIAVRSAKRVL--DLWP 263
            +  R G L +A    + M   P  SV  + A++    +HG  E+AV     ++   + P
Sbjct: 257 NMYARCGNLKKARDIFDGM---PVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKP 313

Query: 264 NDPAIYVLLSNVSKA 278
           +  A   +LS  S A
Sbjct: 314 DGTAFVSVLSACSHA 328



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 5/196 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC +    ++++  +  ++ +SW AII G+   G GE A+  F EM + GI  D    
Sbjct: 259 YARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAF 318

Query: 66  TSIVGAIGVISGFKEGKQMHALI-FKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            S++ A        +G     ++  K G        + +V +    G +N+A ++  SM 
Sbjct: 319 VSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQ 378

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-CHAGFIDKG 182
            R D   W +LL  C  H     A   FEQ+   E++P  T + V+LS     AG ++  
Sbjct: 379 VRADGALWGALLGACKIHRNVELAELAFEQV--IELEPTNTGYYVLLSNVYTEAGNLEGI 436

Query: 183 LQYFYLMRNDASLEPP 198
           L+   LMR     + P
Sbjct: 437 LRVRMLMRKRKLKKDP 452



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 2/133 (1%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           M ++G   + FT    + +   +S    GKQ+H  +FK G     FVQ  L+ MY  C  
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 113 INDANKVF--SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           I++A K+F  +    +  V +NSLL G A +   ++ V LF +M++  ++ +G T L ++
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 171 SACCHAGFIDKGL 183
             C   G +  G+
Sbjct: 121 QPCGIPGNLGLGM 133


>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Vitis vinifera]
          Length = 685

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 169/303 (55%), Gaps = 1/303 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS C    D + ++ ++ +++ ISWN++I GF       +AL  F EM + G+ +D 
Sbjct: 378 ITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDK 437

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F++  ++ A   IS  + G+Q+ A    IG + +  +   LV  Y  CG +    K+F  
Sbjct: 438 FSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDR 497

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M + D V WNS+L+G A +G+  EA+ +F+QM+   ++P   TF+ VLSAC H G +++G
Sbjct: 498 MMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEG 557

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            ++FY M+ D  + P   EHY+ +V L  RAG L +A + I  M      S++ ++L  C
Sbjct: 558 RKWFYAMKLDYHINPG-IEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGC 616

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
             HGN  +  + AKR++DL P +   YV LS +    + W  +  +R LMY++ I K PG
Sbjct: 617 VAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQVRKLMYDKKIPKVPG 676

Query: 303 YSW 305
            SW
Sbjct: 677 CSW 679



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 134/305 (43%), Gaps = 38/305 (12%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+ C    D + ++        + WN++I+G+       +AL+ F+ MR+ G+  DY
Sbjct: 246 ISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDY 305

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI------------- 109
            T  S++ A   +    +G Q+HA ++K+G+ +++ + + LV MY+              
Sbjct: 306 STFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSD 365

Query: 110 ------------------CGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLF 151
                             CG I+DA ++F +M  + L+SWNS+++G + +    EA+ LF
Sbjct: 366 LQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLF 425

Query: 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY--TAIVGL 209
            +M K  ++ D  +   V+SAC     ++ G Q F      A++     +    T++V  
Sbjct: 426 CEMNKLGLRMDKFSLAGVISACASISSLELGEQIFA----RATIIGLEFDQIISTSLVDF 481

Query: 210 LGRAGFLNEAESFINSMSRNPGPSVYKALLS-ACQVHGNREIAVRSAKRVLDLWPNDPAI 268
             + G +       + M ++        L+  A   HG   + V    R + + P D   
Sbjct: 482 YCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITF 541

Query: 269 YVLLS 273
             +LS
Sbjct: 542 VGVLS 546



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 34/203 (16%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI---DYFTITSIVGAI 72
           + +++ +  +N I+WN++I G+   G  ++A+  F ++    ++    D F + ++VGA 
Sbjct: 124 RRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGAC 183

Query: 73  GVISGFKEGKQMHALIF--KIGYDS-----------------------------NVFVQN 101
             +     GKQ+HA I   ++ +DS                             + F  +
Sbjct: 184 TNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLS 243

Query: 102 RLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
            L+  YA CG +NDA ++F       +V WNS++ G   +  + EA++LF  M++  ++ 
Sbjct: 244 ALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQE 303

Query: 162 DGTTFLVVLSACCHAGFIDKGLQ 184
           D +TF  VLSAC   G ID+G+Q
Sbjct: 304 DYSTFASVLSACSTLGIIDQGIQ 326



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 126/274 (45%), Gaps = 53/274 (19%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YSRC+S  + Q ++  +  RN  SWN +I G+   GS  ++L+ F  M       D F+ 
Sbjct: 52  YSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHK----DAFSW 107

Query: 66  TSIVGAIGVISGF-KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
                   VISGF KEG              N+ V  RL                F+ M 
Sbjct: 108 NV------VISGFAKEG--------------NLEVARRL----------------FNEMP 131

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFLV--VLSACCHAGFIDK 181
            ++ ++WNS++ G A +G  +EAV LF+ +    ++   G TF++  V+ AC + G +D 
Sbjct: 132 WKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDC 191

Query: 182 GLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           G Q +  ++ ++   +       +++V L G+ G ++ A   +N M + P      AL+S
Sbjct: 192 GKQIHARIVVDEVEFDSVLG---SSLVNLYGKCGDIDSANHVLNLM-KEPDAFSLSALIS 247

Query: 241 ---AC-QVHGNREIAVRSAKRVLDLWPNDPAIYV 270
              +C +++  R I    +   + LW +  + YV
Sbjct: 248 GYASCGRMNDARRIFCLKSNACVVLWNSMISGYV 281



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 58  IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVF-VQNRLVFMYAICGAINDA 116
           +D+D  ++   +G+         G+ +H L  K G   +V  + NRL+ MY+ C ++ +A
Sbjct: 2   VDLDLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 61

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
            ++F  M +R+  SWN+++ G    G   ++++LF+ M       D  ++ VV+S     
Sbjct: 62  QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMP----HKDAFSWNVVISGFAKE 117

Query: 177 GFIDKGLQYFYLM 189
           G ++   + F  M
Sbjct: 118 GNLEVARRLFNEM 130


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/285 (35%), Positives = 175/285 (61%), Gaps = 5/285 (1%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R+ ISWN++I+G+   G+ ++A+ C   M  +G  +D  T + I+ A   ++  + G ++
Sbjct: 648 RDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMEL 707

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA   +   +S+V V++ LV MY+ CG ++ A+K+F+SM +R+  SWNS++ G A HG  
Sbjct: 708 HAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLG 767

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
           R+A+++FE+M ++   PD  TF+ VLSAC HAG +++GL+YF +M +   L  P+ EHY+
Sbjct: 768 RKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPDHGIL--PQIEHYS 825

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH---GNREIAVRSAKRVLDL 261
            ++ LLGRAG +++ + +I  M   P   +++ +L AC+      N ++   +++ +L++
Sbjct: 826 CVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEI 885

Query: 262 WPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            P +P  YVL SN   AT  W+D    RT M     +K+ G SWV
Sbjct: 886 EPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWV 930



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 122/248 (49%), Gaps = 3/248 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +      ++  +   ++ISWN II+     G+ E+A+  +S MRQ+ I    F +
Sbjct: 425 YAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFAL 484

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + +   +     G+Q+H    K G D +  V N LV MY  CGA++D  KVF+SM E
Sbjct: 485 ISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAE 544

Query: 126 RDLVSWNSLL-LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            D VSWN+++ +  +      E V++F  M +  + P+  TF+ +L+A      ++ G Q
Sbjct: 545 HDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQ 604

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
               +     +E    ++  A++    ++G +   E    +MS       + +++S    
Sbjct: 605 VHAAVMKHGVMEDNVVDN--ALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIY 662

Query: 245 HGNREIAV 252
           +GN + A+
Sbjct: 663 NGNLQEAM 670



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 125/248 (50%), Gaps = 15/248 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSG-EQALKCFSEMRQAGIDIDYFT 64
           Y  C +  D+  V++S+   +++SWN ++    +  +   + +K F+ M + G+  +  T
Sbjct: 526 YGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVT 585

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM- 123
             +++ A+  +S  + GKQ+HA + K G   +  V N L+  YA  G +     +F++M 
Sbjct: 586 FINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMS 645

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           D RD +SWNS++ G  ++G  +EA+     M  +    D  TF ++L+AC     +++G+
Sbjct: 646 DRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGM 705

Query: 184 QYFYL-----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238
           +         + +D  +E       +A+V +  + G ++ A    NSM++    S + ++
Sbjct: 706 ELHAFGIRSHLESDVVVE-------SALVDMYSKCGRVDYASKLFNSMTQRNEFS-WNSM 757

Query: 239 LSACQVHG 246
           +S    HG
Sbjct: 758 ISGYARHG 765



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 94/184 (51%), Gaps = 6/184 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           ++R   + + ++++ S++ +N ++ N +I G       E+A+K F   R   +D++  T 
Sbjct: 320 FARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNT-VDVNADTY 378

Query: 66  TSIVGAIGVIS----GFKEGKQMHALIFKIGY-DSNVFVQNRLVFMYAICGAINDANKVF 120
             ++ A+   S    G + G+ +H  + + G  D  + V N LV MYA CGAI  A+K+F
Sbjct: 379 VVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIF 438

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M+  D +SWN+++     +G   EAV  +  M+++ I P     +  LS+C     + 
Sbjct: 439 QLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLT 498

Query: 181 KGLQ 184
            G Q
Sbjct: 499 AGQQ 502



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 11/160 (6%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR---QAGIDIDYFTITSIVGAI-- 72
           V+  +  RN +SW  +++G+   G  E+A + F  M    QAG     FT  +++ A   
Sbjct: 118 VFDEMPERNAVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQD 177

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC--GAINDANKVFSSMDERDLVS 130
           G         Q+H L+ K  Y SN  V N L+ MY  C  G    A +VF     RDL++
Sbjct: 178 GGPDRLGFAVQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLIT 237

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQ----KTEIKPDGTTF 166
           WN+L+   A  G       LF+ MQ    + +++P   TF
Sbjct: 238 WNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTF 277



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 111/247 (44%), Gaps = 14/247 (5%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q V+     R+ I+WNA+++ +   G        F +M++    I         G++   
Sbjct: 224 QRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITA 283

Query: 76  SGFKEG-----KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
           +    G      Q+   + K G  S+++V + LV  +A  G  ++A  +F S+ +++ V+
Sbjct: 284 ASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVT 343

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-----Y 185
            N L++G     +S EAV++F   + T +  +  T++V+LSA       ++GL+     +
Sbjct: 344 LNGLIVGLVRQDFSEEAVKIFVGTRNT-VDVNADTYVVLLSALAEYSISEEGLRIGRVVH 402

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            +++R    L   +      +V +  + G +  A      M      S +  ++SA   +
Sbjct: 403 GHMLRT--GLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRIS-WNTIISALDQN 459

Query: 246 GNREIAV 252
           GN E AV
Sbjct: 460 GNCEEAV 466



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 3/99 (3%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           + +H  + K G + ++F+ N LV  YA    +  A++VF  M ER+ VSW  L+ G   H
Sbjct: 81  ENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLH 140

Query: 142 GYSREAVQLFEQMQK---TEIKPDGTTFLVVLSACCHAG 177
           G + EA ++F  M +      +P   TF  +L AC   G
Sbjct: 141 GIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGG 179



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 64/134 (47%), Gaps = 1/134 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        +++S+  RN+ SWN++I+G+   G G +A++ F EM ++    D+ T 
Sbjct: 730 YSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTF 789

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD- 124
            S++ A       + G +   ++   G    +   + ++ +    G I+   +    M  
Sbjct: 790 VSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPI 849

Query: 125 ERDLVSWNSLLLGC 138
           E + + W ++L+ C
Sbjct: 850 EPNALIWRTVLVAC 863


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/305 (34%), Positives = 176/305 (57%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           +  YS+  +    +  +  + TRN I+WNA++  +   G+ E  LK +S M  +  +  D
Sbjct: 468 LTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPD 527

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           + T  ++      +   K G Q+     K+G   +  V N ++ MY+ CG I++A K+F 
Sbjct: 528 WVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFD 587

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            +  +DLVSWN+++ G + HG  ++A+++F+ M K   KPD  +++ VLS+C H+G + +
Sbjct: 588 FLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQE 647

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G  YF +++ D ++ P   EH++ +V LL RAG L EA++ I+ M   P   V+ ALLSA
Sbjct: 648 GKFYFDMLKRDHNVSPG-LEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSA 706

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+ HGN E+A  +AK + DL   D   Y+LL+ +        D+  +R LM ++GI+K P
Sbjct: 707 CKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNP 766

Query: 302 GYSWV 306
           GYSW+
Sbjct: 767 GYSWM 771



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 103/203 (50%), Gaps = 4/203 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    + + V+SS+R RN +SW  +I GF   G   ++L+ F++MR   + +D F +
Sbjct: 339 YAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFAL 398

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +I+            +Q+H+L  K G+   V + N L+ MYA CG + +A  +FSSM+E
Sbjct: 399 ATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEE 458

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+VSW  +L   +  G   +A + F+ M    +     T+  +L A    G  + GL+ 
Sbjct: 459 RDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNV----ITWNAMLGAYIQHGAEEDGLKM 514

Query: 186 FYLMRNDASLEPPRAEHYTAIVG 208
           +  M  +  + P    + T   G
Sbjct: 515 YSAMLTEKDVIPDWVTYVTLFRG 537



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 15/237 (6%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++ S+  R+ +SWN +++     G   +AL    +M   G+ +D  T TS + A   +S
Sbjct: 249 ELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLS 308

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               GKQ+HA + +     + +V + +V +YA CG   +A +VFSS+ +R+ VSW  L+ 
Sbjct: 309 SLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIG 368

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G   +G   E+++LF QM+   +  D      ++S C +            L R   SL 
Sbjct: 369 GFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNR-------MDMCLARQLHSLS 421

Query: 197 PPRAEHYTAIV------GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN 247
             ++ H  A+V       +  + G L  AES  +SM      S +  +L+A    GN
Sbjct: 422 -LKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVS-WTGMLTAYSQVGN 476



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 116/254 (45%), Gaps = 36/254 (14%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFT 64
           Y++  S  D + ++  +  R+  SWN +++G+   G    A++ F  MR++G  + + FT
Sbjct: 105 YAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFT 164

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS--- 121
               + + G +   +   Q+  L+ K G+  +  V   +V M+  CGA++ A+K FS   
Sbjct: 165 FGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIE 224

Query: 122 ----------------------------SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                                       SM ERD+VSWN ++   +  G +REA+ +   
Sbjct: 225 RPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVD 284

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGR 212
           M    ++ D TT+   L+AC     +  G Q +  ++R+   ++P  A   +A+V L  +
Sbjct: 285 MHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVA---SAMVELYAK 341

Query: 213 AGFLNEAESFINSM 226
            G   EA    +S+
Sbjct: 342 CGCFKEARRVFSSL 355



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 99/210 (47%), Gaps = 15/210 (7%)

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
           + NV   N ++  YA  G+++DA ++F  M  RD+ SWN+L+ G    G   +A++ F  
Sbjct: 92  EPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVS 151

Query: 154 MQKT-EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGR 212
           M+++ +  P+  TF   + +C   G+ +  LQ   L+        P     T IV +  R
Sbjct: 152 MRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVA--TGIVDMFVR 209

Query: 213 AGFLNEAESFINSMSRNPGPSVY--KALLSACQVHGNREIAVRSAKRVLDLWPNDPAIY- 269
            G ++ A    + + R   P+V+   ++L+       +   V  A  + +  P    +  
Sbjct: 210 CGAVDFASKQFSQIER---PTVFCRNSMLAGYA----KSYGVDHALELFESMPERDVVSW 262

Query: 270 -VLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
            +++S +S++     +A  +   M+NRG+R
Sbjct: 263 NMMVSALSQSGRA-REALSVAVDMHNRGVR 291


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 183/301 (60%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C   +  + ++  +  RN ++W+ ++ G+  +G  E+AL  F E     + ++ ++ 
Sbjct: 161 YAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSF 220

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++      +  + G+Q+  L  K  +DS+ FV + LV +Y+ CG +  A +VF  +  
Sbjct: 221 STVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPM 280

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+L  WN++L  CA H ++++ ++LF++M+ + +KP+  TFL VL+AC HAG +D+G  Y
Sbjct: 281 RNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGKYY 340

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM+ ++ +EP   +HY ++V +LGRAG L EA   + +M  +P  SV+ ALL++C +H
Sbjct: 341 FDLMK-ESRIEPTD-KHYASLVDMLGRAGKLEEALEIVTNMPIDPTESVWGALLTSCTIH 398

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+A  +A +V +L P    +++ LSN   A   ++DA   R L+ +RG +K+ G SW
Sbjct: 399 KNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSW 458

Query: 306 V 306
           V
Sbjct: 459 V 459



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 122/254 (48%), Gaps = 5/254 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+     D +  +     ++  +W++II+ F        +L+   +M    +  D   +
Sbjct: 60  YSKSQLPFDSRRAFEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVL 119

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S   + G++S    GK +H L  K GYD++VFV + LV MYA CG I  A K+F  M  
Sbjct: 120 PSATKSCGILSRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPL 179

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++V+W+ ++ G A  G + EA+ LF++     +  +  +F  V+S C ++  ++ G Q 
Sbjct: 180 RNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQI 239

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS-RNPGPSVYKALLSACQV 244
             L    +          +++V L  + G L  A    + +  RN G  ++ A+L AC  
Sbjct: 240 QGLCIKSSFDSSSFVG--SSLVSLYSKCGDLEGAYQVFDEVPMRNLG--IWNAMLKACAQ 295

Query: 245 HGNREIAVRSAKRV 258
           H + +  +   KR+
Sbjct: 296 HSHTQKVIELFKRM 309


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 180/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S +D +  +  ++  + + W +II G+   G  E AL  + +M+  G+  +  T+
Sbjct: 365 YAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTM 424

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   ++   +GKQMHA I K  +   + + + L  MYA CG+++D  ++F  M  
Sbjct: 425 ASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPA 484

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD++SWN+++ G + +G   E ++LFE+M     KPD  TF+ +LSAC H G +D+G  Y
Sbjct: 485 RDVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPDNVTFVNLLSACSHMGLVDRGWVY 544

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M ++ ++  P  EHY  +V +L RAG L+EA+ FI S + + G  +++ LL+A + H
Sbjct: 545 FKMMFDEFNI-APTVEHYACMVDILSRAGKLHEAKEFIESATVDHGLCLWRILLAASKNH 603

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + ++   + +++++L   + + YVLLS++  A   W+D   +R +M  RG+ K+PG SW
Sbjct: 604 RDYDLGAYAGEKLMELGSLESSAYVLLSSIYTALGKWEDVERVRGMMKARGVTKEPGCSW 663

Query: 306 V 306
           +
Sbjct: 664 I 664



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 115/217 (52%), Gaps = 4/217 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C S  D    +     +N I+W+A++ GF   G  ++ALK F +M Q+G     
Sbjct: 261 VTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSE 320

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+  ++ A        EG+QMH    K+GY+  ++V + LV MYA CG+I DA K F  
Sbjct: 321 FTLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFEC 380

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + + D+V W S++ G   +G    A+ L+ +MQ   + P+  T   VL AC +   +D+G
Sbjct: 381 IQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQG 440

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218
            Q +  +++ + SLE P     +A+  +  + G L++
Sbjct: 441 KQMHAGIIKYNFSLEIPIG---SALSAMYAKCGSLDD 474



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 4/180 (2%)

Query: 9   CDSSLDFQ--NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR--QAGIDIDYFT 64
           C + L F+  +++  +  RN +SW  +I+G+ +    ++A + F  MR  + G + + F 
Sbjct: 162 CKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFV 221

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            TS++ A+        G+Q+H+L  K G    V V N LV MY  CG++ DA K F    
Sbjct: 222 FTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSG 281

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            ++ ++W++++ G A  G S +A++LF  M ++   P   T + V++AC  A  I +G Q
Sbjct: 282 NKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQ 341



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 8/194 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ-----AGIDI 60
           Y++C        V+ S+  ++ +SWN +I  F    +   +L      RQ       I  
Sbjct: 55  YAKCSHFSKANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVP 114

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           +  T+T +  A   +S  + G+Q HAL  K     +VF  + L+ MY   G + +A  +F
Sbjct: 115 NAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLF 174

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV--VLSACCHAGF 178
             M ER+ VSW +++ G A    + EA +LF+ M+  E   +   F+   VLSA      
Sbjct: 175 DEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYML 234

Query: 179 IDKGLQYFYL-MRN 191
           ++ G Q   L M+N
Sbjct: 235 VNTGRQVHSLAMKN 248



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 5/100 (5%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            ++G+ +HA I   G  S+  + N L+ +YA C   + AN VF S++ +D+VSWN L+  
Sbjct: 26  LRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLINA 85

Query: 138 CAH---HGYSREAVQLFEQ--MQKTEIKPDGTTFLVVLSA 172
            +    H  S   + LF Q  M    I P+  T   V +A
Sbjct: 86  FSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTA 125


>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
          Length = 584

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/305 (34%), Positives = 179/305 (58%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ YS+C      + ++ ++R R+ ++WNA+I+G+   G  E+A++ + EM+ A +  D 
Sbjct: 151 VVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYREMQVAQVVPDS 210

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  + + A         G+++   I     D +VF+ + LV MYA CG ++ A   F  
Sbjct: 211 ATFVATLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKARDWFDR 270

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ER++V+W S++ G   HG+ REA++LF  M++    P+  TF+ VL+AC HAG +++G
Sbjct: 271 LQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVTFVAVLAACAHAGLVNEG 330

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFI-NSMSRNPGPSVYKALLSA 241
              F  M+    L  PRAEHY ++V + GRAG L++A  FI +S+   PGP V+ A+L A
Sbjct: 331 RNAFDSMKRVYGLV-PRAEHYCSMVDMYGRAGLLDDAMQFICDSIPEEPGPEVWTAMLGA 389

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++H N  + V  A+R++ L P +P+  VLLSN+   +   +    +R +M  R ++K+ 
Sbjct: 390 CKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNVMIKRRLKKQI 449

Query: 302 GYSWV 306
           GYS +
Sbjct: 450 GYSLI 454



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 117/236 (49%), Gaps = 5/236 (2%)

Query: 45  QALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLV 104
           +A+  +  +  A +    F  T+   A   +S  + G  +HA    +G+ S+ FVQ  LV
Sbjct: 92  EAIAFYGRLLAAALPFSSFAFTAAAKACADLSALRTGMAVHAHSVLLGFGSDRFVQTALV 151

Query: 105 FMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164
            +Y+ CG +  A K+F ++ +R +V+WN+++ G   +G +  A++++ +MQ  ++ PD  
Sbjct: 152 VLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYREMQVAQVVPDSA 211

Query: 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
           TF+  LSAC  AG +D G +    + +D           +A+V +  R G +++A  + +
Sbjct: 212 TFVATLSACAQAGALDLGREVERRIVSDQM--DVSVFLGSALVNMYARCGLVSKARDWFD 269

Query: 225 SMSRNPGPSVYKALLSACQVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKA 278
            +        + ++++   +HG+   A++     R     PND     +L+  + A
Sbjct: 270 RLQER-NVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVTFVAVLAACAHA 324


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 173/301 (57%), Gaps = 1/301 (0%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
            YS+C        V++S+R  N ++WN++I+ +      E +++ F+ M   GI  D  +I
Sbjct: 1020 YSKCGLPEMALKVFTSMRPENIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSI 1079

Query: 66   TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            TS++ AI   +   +GK +H    ++G  S+  ++N L+ MY  CG    A  +F  M  
Sbjct: 1080 TSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQH 1139

Query: 126  RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            + L++WN ++ G   HG  R A+ LF++++K    PD  TFL ++SAC H+GF+++G  +
Sbjct: 1140 KSLITWNLMIYGYGSHGDCRTALSLFDELKKAGETPDDVTFLSLISACNHSGFVEEGKNF 1199

Query: 186  FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
            F +M+ D  +E P+ EHY  +V LLGRAG L EA SFI +M      S++  LLSA + H
Sbjct: 1200 FEIMKQDYGIE-PKMEHYANMVDLLGRAGRLEEAYSFIKAMPTEADSSIWLCLLSASRTH 1258

Query: 246  GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
             N E+ + SA+++L + P   + YV L N+       ++A  +   M  RG++K+PG SW
Sbjct: 1259 HNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGEMKERGLQKQPGCSW 1318

Query: 306  V 306
            +
Sbjct: 1319 I 1319



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 100/181 (55%), Gaps = 2/181 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    + + V+S V  +    WNA++A +    +G  AL+ F  MRQ  +  D FT+
Sbjct: 816 YSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTL 875

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++    +   +  GK +HA +FK    S   +++ L+ +Y+ CG   DA  VF SM+E
Sbjct: 876 SNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSMEE 935

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE--IKPDGTTFLVVLSACCHAGFIDKGL 183
           +D+V+W SL+ G   +G  +EA+++F  M+  +  +KPD      V++AC     +  GL
Sbjct: 936 KDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGL 995

Query: 184 Q 184
           Q
Sbjct: 996 Q 996



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 8/225 (3%)

Query: 6    YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA--GIDIDYF 63
            YS+C    D   V+ S+  ++ ++W ++I+G C  G  ++ALK F +M+     +  D  
Sbjct: 917  YSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSD 976

Query: 64   TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
             +TS++ A   +     G Q+H  + K G   NVFV + L+ +Y+ CG    A KVF+SM
Sbjct: 977  IMTSVINACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSM 1036

Query: 124  DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
               ++V+WNS++   + +     +++LF  M    I PD  +   VL A      + KG 
Sbjct: 1037 RPENIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLKGK 1096

Query: 184  Q-YFYLMRNDASLEPPRAEHY-TAIVGLLGRAGFLNEAESFINSM 226
              + Y +R    L  P   H   A++ +  + GF   AE+    M
Sbjct: 1097 SLHGYTLR----LGIPSDTHLKNALIDMYVKCGFSKYAENIFKKM 1137



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 7/175 (4%)

Query: 12  SLDFQNVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVG 70
           S D   V+  +  + N + WN +I GF      E +L+ +   +   + +     TS  G
Sbjct: 720 STDAWRVFVEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAKSNSVKL---VSTSFTG 776

Query: 71  AIGVISGFKE---GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           A+G  S  +    G+Q+H  + K+G D++ +V   L+ MY+ CG + +A  VFS + ++ 
Sbjct: 777 ALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKR 836

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           L  WN+++     +     A++LF  M++  + PD  T   V+S C   G  D G
Sbjct: 837 LEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYG 891



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 96/216 (44%), Gaps = 27/216 (12%)

Query: 20  SSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFK 79
           S V  R+    N++I G+      ++ + CF  M   G+  D F+++ +V  +     F+
Sbjct: 625 SGVSARDVTVCNSMIDGYFKFRRFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGNFR 684

Query: 80  --EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-DERDLVSWNSLLL 136
             +GKQ+H  + +   D + F++  L+ MY   G   DA +VF  + D+ ++V WN +++
Sbjct: 685 REDGKQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIV 744

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-----------HAGFIDKGLQY 185
           G         +++L+   +   +K   T+F   L AC            H   +  GL  
Sbjct: 745 GFGGSEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLD- 803

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES 221
                ND  +        T+++ +  + G + EAE+
Sbjct: 804 -----NDPYVS-------TSLLSMYSKCGMVGEAET 827



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 9/172 (5%)

Query: 29  SWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           S N+ I      G   QAL  +++    + +    FT  S++ A   ++    GK +H  
Sbjct: 527 SVNSGIRALIQKGEYLQALHLYTKHDGSSPLWTSVFTFPSLLKACSSLTNLSSGKTIHGS 586

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVF-----SSMDERDLVSWNSLLLGCAHHG 142
           I  +G+  + F+   LV MY  CG ++ A +VF     S +  RD+   NS++ G     
Sbjct: 587 IIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSGVSARDVTVCNSMIDGYFKFR 646

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI--DKGLQ-YFYLMRN 191
             +E V  F +M    ++PD  +  +V+S  C  G    + G Q + Y++RN
Sbjct: 647 RFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGNFRREDGKQIHGYMLRN 698


>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 530

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 113/295 (38%), Positives = 171/295 (57%), Gaps = 3/295 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFC-NLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           D + ++     ++ + +NA+I G+  ++ + E+AL+ + EM++ G   +  T  S++GA 
Sbjct: 231 DAEEIFERTVEKDVVVFNAMIEGYSKSVQTAEKALEVYVEMQRYGFRPNLSTFASVIGAC 290

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
            V++GF+ G+Q+   + K  + +NV   + L+ MY+ CG I DA + F  M E+++ SW+
Sbjct: 291 SVLAGFEIGQQVQGQLLKREFFTNVKTGSALIDMYSKCGRIEDARRAFEQMPEKNVFSWS 350

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
           S++ G   +G   EA+QLF +MQ   I+P+  TFL  LSAC HAG + KG + F  M  +
Sbjct: 351 SMIDGYGKNGRPDEALQLFHKMQDCCIEPNYVTFLGALSACGHAGLVSKGREIFESMERE 410

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            SL+P   EHY  +V LLGRAG LN A  F+  M   P   V+ ALLSAC +HGN E+A 
Sbjct: 411 YSLKPG-MEHYACMVDLLGRAGSLNLAWEFVMGMPEKPSSDVWAALLSACNLHGNVEMAS 469

Query: 253 RSAKRVLDL-WPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +A  +  L        YV LSN   A   WD   ++R +M +RGI K  G SWV
Sbjct: 470 VAANELFKLNAEGRSGAYVALSNTLAAAGKWDGVTEVREIMKSRGILKDTGSSWV 524



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 52/92 (56%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G+++HA I K G+  N  V  +L+ +Y  CG +  A ++F  + +R L ++N L+ G   
Sbjct: 61  GQKIHAHIVKTGFIPNTNVSIKLLILYLKCGCLKYARQMFDELPQRTLSAYNYLIGGYLK 120

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            G  ++++ L  ++     +PDG T+ ++L A
Sbjct: 121 LGLVQDSMNLVRRLVLEGQRPDGFTYSMILKA 152


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/292 (35%), Positives = 169/292 (57%), Gaps = 2/292 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFTITSIVGAIGV 74
           + ++  +  RN  SWN +I G+ + G   + L+CF  M   G+ + +  T+ +++ A   
Sbjct: 271 EQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACAR 330

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +     GK +H     IG+  +++V N L+ MY+ CG I +A +VF SMD +DL++WNS+
Sbjct: 331 LGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSM 390

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + G A HG   +A+ LF QM+    KPDG TF+ VL +C H G +++G  YF  M N+ S
Sbjct: 391 ICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYS 450

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           +  P+ EHY  +V L GRAG L+ A  F+  M       ++ ALL AC+++ N ++A  +
Sbjct: 451 I-APQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELA 509

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            ++++ L P +PA YVLLSN+      W D   ++ LM + G +K PG S +
Sbjct: 510 LQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLI 561



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 58/108 (53%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WNAI  G+ +     + +  F +M+   +  + FT   ++ +   I  F EG+++H  + 
Sbjct: 91  WNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVI 150

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           K G + N FV   L+ +Y+   AI  A K+F  M ER++V+W S++ G
Sbjct: 151 KGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISG 198



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 32/127 (25%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +F +  + +V + N +V  Y   G +  A K+F +M  RD +SWN++L G A++G     
Sbjct: 211 LFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEAC 270

Query: 148 VQLFEQMQKTE--------------------------------IKPDGTTFLVVLSACCH 175
            QLFE+M +                                  + P+  T + VLSAC  
Sbjct: 271 EQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACAR 330

Query: 176 AGFIDKG 182
            G +D G
Sbjct: 331 LGALDLG 337



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 50/101 (49%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           +++ A I   G+  N +V   +V  +     +  A  +F    +  +  WN++  G  H+
Sbjct: 42  QKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHN 101

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            + RE V LF +M+  +++P+  TF +VL +C   G   +G
Sbjct: 102 AFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEG 142



 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 2/135 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    +   V+ S+  ++ I+WN++I G    G G  AL  F +M+  G   D  T 
Sbjct: 363 YSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITF 422

Query: 66  TSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ +   +   +EG    ++++ +      +     +V ++   G ++ A +    M 
Sbjct: 423 IGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMP 482

Query: 125 -ERDLVSWNSLLLGC 138
            E D V W +LL  C
Sbjct: 483 MEADAVIWAALLGAC 497


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 176/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I +Y +C+       V+    + N I++ ++I        GE A+K F EM + G++ D 
Sbjct: 448 IDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDP 507

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           F ++S++ A   +S +++GKQ+HA + K  + ++VF  N LV+ YA CG+I DA+  FS 
Sbjct: 508 FVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSG 567

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + ++ +VSW++++ G A HG+ + A+ +F +M    I P+  T   VL AC HAG +D+ 
Sbjct: 568 LPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEA 627

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF  M+    ++    EHY+ ++ LLGRAG L++A   +NSM      +V+ ALL+A 
Sbjct: 628 KGYFSSMKEMFGIDRTE-EHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAAS 686

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH + E+   +A+++  L P     +VLL+N   +   WD+   +R LM +  ++K+P 
Sbjct: 687 RVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPA 746

Query: 303 YSWV 306
            SWV
Sbjct: 747 MSWV 750



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%)

Query: 21  SVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE 80
           + R RN +SWN +++ F        A++ F EM  +G+  + F  + +V A       + 
Sbjct: 161 AARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEA 220

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G+++HA++ + GYD +VF  N LV MY+  G I+ A  VF  + + D+VSWN+ + GC  
Sbjct: 221 GRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVL 280

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           HG+ + A++L  QM+ + + P+  T   +L
Sbjct: 281 HGHDQHALELLLQMKSSGLVPNVFTLSSIL 310



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 128/254 (50%), Gaps = 7/254 (2%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + V+  +  ++ + WNA+I+G  + G   ++L  F  MR+ G DI+  T+ +++ +  
Sbjct: 358 DARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTA 417

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +    +  Q+HAL  KIG+ S+  V N L+  Y  C  +  ANKVF      +++++ S
Sbjct: 418 SLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTS 477

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
           ++   +   +  +A++LF +M +  ++PD      +L+AC      ++G Q + +L++  
Sbjct: 478 MITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRK 537

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
              +        A+V    + G + +A+   + +  + G   + A++     HG+ + A+
Sbjct: 538 FMTDVFAG---NALVYTYAKCGSIEDADLAFSGLP-DKGVVSWSAMIGGLAQHGHGKRAL 593

Query: 253 RSAKRVLD--LWPN 264
              +R++D  + PN
Sbjct: 594 DVFRRMVDERIAPN 607



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  V   + +SWNA I+G    G  + AL+   +M+ +G+  + FT++SI+ A      
Sbjct: 259 VFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGA 318

Query: 78  FKEG--KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                 +Q+H  + K   DS+ ++   LV MYA  G ++DA KVF  +  +DL+ WN+L+
Sbjct: 319 GAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALI 378

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            GC+H G   E++ LF +M+K     + TT   VL +
Sbjct: 379 SGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKS 415



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 120/250 (48%), Gaps = 9/250 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + V+        +SW++++  + N     +AL  F  MR  G+  + F +
Sbjct: 47  YSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFAL 106

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF-SSMD 124
             IV      +G   G Q+HA+    G   ++FV N LV MY   G +++A +VF  +  
Sbjct: 107 P-IVLKCAPDAGL--GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAAR 163

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +R+ VSWN ++     +    +AV+LF +M  + ++P+   F  V++AC  +  ++ G +
Sbjct: 164 DRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRK 223

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            +  ++R     +   A    A+V +  + G ++ A      + +    S + A +S C 
Sbjct: 224 VHAMVVRTGYDKDVFTA---NALVDMYSKLGDIHMAALVFGKVPKTDVVS-WNAFISGCV 279

Query: 244 VHGNREIAVR 253
           +HG+ + A+ 
Sbjct: 280 LHGHDQHALE 289



 Score = 45.4 bits (106), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 23/169 (13%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G  +HA + K G   + F +N L+  Y+ C     A +VF    +   VSW+SL+   ++
Sbjct: 23  GAHIHAHLLKSGL-LHAF-RNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSN 80

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF--------IDKGLQYFYLMRND 192
           +   REA+  F  M+   ++ +     +VL     AG         +  GL     + N 
Sbjct: 81  NALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGLGVQVHAVAVSTGLSGDIFVAN- 139

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
                       A+V + G  GF++EA    +  +R+     +  ++SA
Sbjct: 140 ------------ALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSA 176


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 173/304 (56%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C S  D Q V+  +  +  + WN+IIAG+   G  E+AL  + EMR +G+ ID 
Sbjct: 274 IDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDN 333

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT + I+     ++  +  KQ HA + + G+  ++     LV +Y+  G I DA  VF  
Sbjct: 334 FTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDM 393

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  ++++SWN+L+ G  +HG   EAV++FE+M    + P+  TFL VLSAC ++G  D+G
Sbjct: 394 MPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRG 453

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + F  M  D  ++ PRA HY  ++ LLGR G L+EA + I      P  +++ ALL+AC
Sbjct: 454 WEIFESMSRDHKIK-PRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTAC 512

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH N E+   +A+++  + P   + YV+L N+   +   ++A  +   +  RG+R  P 
Sbjct: 513 RVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSGRLEEAAAVIQTLKRRGLRMLPA 572

Query: 303 YSWV 306
            SW+
Sbjct: 573 CSWI 576



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 136/277 (49%), Gaps = 7/277 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +L + +C   +D + ++  +  +N +SWN II G  + G   +A + F  M Q   D   
Sbjct: 173 LLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGS 232

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
               +++ A   +     G+Q+H+   K G   +VFV   L+ MY+ CG+I DA  VF  
Sbjct: 233 RMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQ 292

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E+  V WNS++ G A HGYS EA+ ++ +M+ + +K D  TF +++  C     ++  
Sbjct: 293 MPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHA 352

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            Q +  L+R+   L+       TA+V L  + G + +A+   + M      S + AL++ 
Sbjct: 353 KQAHAGLVRHGFGLD---IVANTALVDLYSKWGRIEDAKHVFDMMPHKNVIS-WNALIAG 408

Query: 242 CQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVS 276
              HG    AV   +R+L   + PN      +LS  S
Sbjct: 409 YGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACS 445



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 1/141 (0%)

Query: 45  QALKCFSEMRQAGI-DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRL 103
           +AL+ F  +   G  D+D  T  ++V A   +   +  K++   +   G D + +++NR+
Sbjct: 113 EALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRV 172

Query: 104 VFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG 163
           + M+  CG + DA ++F  M E++++SWN+++ G    G   EA +LF  M +       
Sbjct: 173 LLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGS 232

Query: 164 TTFLVVLSACCHAGFIDKGLQ 184
             F+ ++ A    G I  G Q
Sbjct: 233 RMFVTMIRASAGLGLIFAGRQ 253


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 174/301 (57%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R +     + ++     ++  SWNA+I+G+   G  ++A+  F EM    +  +  T+
Sbjct: 360 YCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTV 418

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI+ A   +     GK +H LI     +SNV+V   LV MYA CG+I +A ++F  M +
Sbjct: 419 TSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVD 478

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++V+WN+++ G   HG+ +EA++LF +M ++ I P G TFL +L AC H+G + +G + 
Sbjct: 479 KNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEI 538

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ M N+   + P +EHY  +V +LGRAG L  A  FI  M   PGP+V+ ALL AC +H
Sbjct: 539 FHSMANNYGFQ-PMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIH 597

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+A  ++KR+  L P +   YVLLSN+      +  A  +R ++  R + K PG + 
Sbjct: 598 KNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTL 657

Query: 306 V 306
           +
Sbjct: 658 I 658



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 117/248 (47%), Gaps = 4/248 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C  S   + ++  +   + IS+NA+I+G+      E A+  F E+  +G  ++  T+
Sbjct: 259 YSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTL 318

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++      +  +  + +  L  KIG      V   L  +Y     +  A ++F    E
Sbjct: 319 VGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPE 378

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           + L SWN+++ G   +G +  A+ LF++M   ++ P+  T   +LSAC   G +  G   
Sbjct: 379 KSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGKWV 437

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             L++++  LE       TA+V +  + G + EA    + M  +     + A+++   +H
Sbjct: 438 HGLIKSE-RLE-SNVYVSTALVDMYAKCGSIVEARQLFDLMV-DKNVVTWNAMITGYGLH 494

Query: 246 GNREIAVR 253
           G+ + A++
Sbjct: 495 GHGKEALK 502



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 80/152 (52%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ + WN +I+GF      E +++ F +M   G+  D  T+ +++ A+  +
Sbjct: 168 RKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAEL 227

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             ++ G  +  L  K G  S+V+V   L+ +Y+ CG       +F  +D+ DL+S+N+++
Sbjct: 228 QEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMI 287

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
            G   +  +  AV LF ++  +  + + +T +
Sbjct: 288 SGYTFNHETESAVTLFRELLASGQRVNSSTLV 319



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 1/158 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDIDYFTITSIVGAIGV 74
           + +++ V   +   +N +I GF + G  + ++  ++ +R+   +  D FT    + A   
Sbjct: 66  RQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASR 125

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +   + G  +HA     G  SN+FV + +V +Y        A KVF  M ERD V WN++
Sbjct: 126 LEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTM 185

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           + G + + Y  +++++F  M    +  D TT   VL+A
Sbjct: 186 ISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTA 223


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 174/301 (57%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R +     + ++     ++  SWNA+I+G+   G  ++A+  F EM    +  +  T+
Sbjct: 360 YCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTV 418

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI+ A   +     GK +H LI     +SNV+V   LV MYA CG+I +A ++F  M +
Sbjct: 419 TSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVD 478

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++V+WN+++ G   HG+ +EA++LF +M ++ I P G TFL +L AC H+G + +G + 
Sbjct: 479 KNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEI 538

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ M N+   + P +EHY  +V +LGRAG L  A  FI  M   PGP+V+ ALL AC +H
Sbjct: 539 FHSMANNYGFQ-PMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIH 597

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+A  ++KR+  L P +   YVLLSN+      +  A  +R ++  R + K PG + 
Sbjct: 598 KNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTL 657

Query: 306 V 306
           +
Sbjct: 658 I 658



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 117/248 (47%), Gaps = 4/248 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C  S   + ++  +   + IS+NA+I+G+      E A+  F E+  +G  ++  T+
Sbjct: 259 YSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTL 318

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++      +  +  + +  L  KIG      V   L  +Y     +  A ++F    E
Sbjct: 319 VGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPE 378

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           + L SWN+++ G   +G +  A+ LF++M   ++ P+  T   +LSAC   G +  G   
Sbjct: 379 KSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGKWV 437

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             L++++  LE       TA+V +  + G + EA    + M  +     + A+++   +H
Sbjct: 438 HGLIKSE-RLE-SNVYVSTALVDMYAKCGSIVEARQLFDLMV-DKNVVTWNAMITGYGLH 494

Query: 246 GNREIAVR 253
           G+ + A++
Sbjct: 495 GHGKEALK 502



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 80/152 (52%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ + WN +I+GF      E +++ F +M   G+  D  T+ +++ A+  +
Sbjct: 168 RKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAEL 227

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
             ++ G  +  L  K G  S+V+V   L+ +Y+ CG       +F  +D+ DL+S+N+++
Sbjct: 228 QEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMI 287

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
            G   +  +  AV LF ++  +  + + +T +
Sbjct: 288 SGYTFNHETESAVTLFRELLASGQRVNSSTLV 319



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 1/158 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDIDYFTITSIVGAIGV 74
           + +++ V   +   +N +I GF + G  + ++  ++ +R+   +  D FT    + A   
Sbjct: 66  RQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASR 125

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +   + G  +HA     G  SN+FV + +V +Y        A KVF  M ERD V WN++
Sbjct: 126 LEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTM 185

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           + G + + Y  +++++F  M    +  D TT   VL+A
Sbjct: 186 ISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTA 223


>gi|297608225|ref|NP_001061322.2| Os08g0238100 [Oryza sativa Japonica Group]
 gi|255678268|dbj|BAF23236.2| Os08g0238100 [Oryza sativa Japonica Group]
          Length = 647

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 172/307 (56%), Gaps = 8/307 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---D 59
           I  YSRC        V+ ++ T+N +SW A+I+GF      E  L  F+ MR +     D
Sbjct: 300 ITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISGFALHNRVEPCLHLFASMRLSSCKPND 359

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           I + T+ S+     +++    GK +HAL  ++G+ S V V N L+ MYA CG I++A  +
Sbjct: 360 ITFATLFSVCTNHALLA---LGKSVHALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQSI 416

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F  +  +DLVSWN+++ GC+ +G ++  + L ++M++  I PD  +FL VLS+C HA  +
Sbjct: 417 FGFIACKDLVSWNAMIFGCSQYGLAKHCLDLLKEMERQHIVPDALSFLGVLSSCRHARLV 476

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           ++G   F  M        P  +HY+ +V LLGRAG L EA   I +MS  P   ++ +LL
Sbjct: 477 EEGRHCFKTMIEHGI--KPGLDHYSCMVDLLGRAGLLEEAWDLIQTMSIPPNAVIWGSLL 534

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
            +C+VHGN  I +++A+  L L P   A ++ L+N+     CW D   +R  M  RG++ 
Sbjct: 535 GSCRVHGNISIGIQAAEHRLKLEPGCAATHIQLANLYATIGCWSDVARVRMAMKARGLKT 594

Query: 300 KPGYSWV 306
             G SW+
Sbjct: 595 NIGCSWI 601



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 20/189 (10%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F +G Q+H L+ K+G DS VF+ + L+ +Y+ C  +  +  VF +M  ++ VSW +++ G
Sbjct: 274 FTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISG 333

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A H      + LF  M+ +  KP+  TF  + S C +   +  G       ++  +L+ 
Sbjct: 334 FALHNRVEPCLHLFASMRLSSCKPNDITFATLFSVCTNHALLALG-------KSVHALQM 386

Query: 198 PRAEH-----YTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
               H       A++ +  + G ++EA+S    ++     S + A++  C  +G      
Sbjct: 387 RMGFHSYVHVSNALLSMYAKCGCIDEAQSIFGFIACKDLVS-WNAMIFGCSQYG------ 439

Query: 253 RSAKRVLDL 261
             AK  LDL
Sbjct: 440 -LAKHCLDL 447


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/287 (36%), Positives = 163/287 (56%), Gaps = 1/287 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  ++ + WNA+I G+ +   G++AL  F+EM+   I+ D  T+ S + A   +  
Sbjct: 253 LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGA 312

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G  +H  I K     NV +   L+ MYA CG I  A +VF  +  R+ ++W +++ G
Sbjct: 313 LDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISG 372

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG +  A+  F +M    + PD  TFL +LSACCH G +++G +YF  M +  +L  
Sbjct: 373 LALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLS- 431

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P+ +HY+ +V LLGRAG L EAE  I SM       V+ AL  AC++HGN  +  R+A +
Sbjct: 432 PKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASK 491

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           +L + P+D  IYVLL+N+    + W +AG  R LM  RG+ K PG S
Sbjct: 492 LLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCS 538



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 129/271 (47%), Gaps = 27/271 (9%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
            R+ +SWN++I G+   G   +AL  + EM+  GI  D  T+  +V +   +     G++
Sbjct: 142 VRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRE 201

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD----------------ERD 127
            H  I + G    V + N L+ MY  CG +  A K+F SM                 ++D
Sbjct: 202 SHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKD 261

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YF 186
           +V WN+++ G  H    +EA+ LF +MQ   I PD  T +  LSAC   G +D G+  + 
Sbjct: 262 VVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHH 321

Query: 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS--VYKALLSACQV 244
           Y+ +++ SL        TA++ +  + G + +A   I      PG +   + A++S   +
Sbjct: 322 YIEKHELSLNVALG---TALIDMYAKCGKITKA---IQVFQELPGRNSLTWTAIISGLAL 375

Query: 245 HGNREIAVRSAKRVLD--LWPNDPAIYVLLS 273
           HGN   A+     ++D  + P++     LLS
Sbjct: 376 HGNAHGAIAYFSEMIDNSVMPDEVTFLGLLS 406



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 13  LDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFTITSIVG 70
           LD+  N+  + R  N  SWN  I GF +  +  +A+  +  + Q  G   D +T   +  
Sbjct: 28  LDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFK 87

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
           A   +S  + G ++   +  +G+DS++FV N ++ +   CG ++ A K+F     RDLVS
Sbjct: 88  ACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVS 147

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLM 189
           WNS++ G    G++ EA+  + +M+   IKPD  T + V+S+C     +D G + + Y+ 
Sbjct: 148 WNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIE 207

Query: 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
            N   L  P A    A++ +  + G L  A    +SM+
Sbjct: 208 ENGLKLTVPLA---NALMDMYMKCGNLESARKLFDSMT 242



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 2/139 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        V+  +  RN ++W AII+G    G+   A+  FSEM    +  D  T 
Sbjct: 342 YAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTF 401

Query: 66  TSIVGAIGVISGFKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A       +EG++  + +  K      +   + +V +    G + +A ++  SM 
Sbjct: 402 LGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMP 461

Query: 125 -ERDLVSWNSLLLGCAHHG 142
            E D V W +L   C  HG
Sbjct: 462 IEADAVVWGALFFACRIHG 480


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 173/304 (56%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C S  D   V+  +  +  + WN+IIA +   G  E+AL  + EMR +G  ID+
Sbjct: 260 IDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDH 319

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FTI+ ++     ++  +  KQ HA + + GYD+++     LV  Y+  G + DA  VF+ 
Sbjct: 320 FTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNR 379

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  ++++SWN+L+ G  +HG   EAV++FEQM +  + P+  TFL VLSAC ++G  ++G
Sbjct: 380 MRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSGLSERG 439

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + FY M  D  ++ PRA HY  +V LLGR G L+EA   I S    P  +++  LL+AC
Sbjct: 440 WEIFYSMSRDHKVK-PRAMHYACMVELLGREGLLDEAYELIRSAPFKPTTNMWATLLTAC 498

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N E+   +A+ +  + P     Y++L N+  ++    +A  +   +  +G+R  P 
Sbjct: 499 RMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGVLQTLKRKGLRMLPA 558

Query: 303 YSWV 306
            +W+
Sbjct: 559 CTWI 562



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 131/277 (47%), Gaps = 7/277 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  + +C   LD + ++  +  ++  SW  +I GF + G+  +A   F  M +   D   
Sbjct: 159 LFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRS 218

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T T+++ A   +   + G+Q+H+   K G   + FV   L+ MY+ CG+I DA+ VF  
Sbjct: 219 RTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQ 278

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E+  V WNS++   A HGYS EA+  + +M+ +  K D  T  +V+  C     ++  
Sbjct: 279 MPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYA 338

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            Q +  L+R     +       TA+V    + G + +A    N M R    S + AL++ 
Sbjct: 339 KQAHAALVRRGYDTDIVAN---TALVDFYSKWGRMEDAWHVFNRMRRKNVIS-WNALIAG 394

Query: 242 CQVHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVS 276
              HG  E AV   +++L   + PN      +LS  S
Sbjct: 395 YGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACS 431



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 2/142 (1%)

Query: 45  QALKCFS--EMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR 102
           +A++ F   E+   G D+   T  ++V A   +   +  K++   +   G++ +++V NR
Sbjct: 98  EAMELFEILELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNR 157

Query: 103 LVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
           ++F++  CG + DA K+F  M E+D+ SW +++ G    G   EA  LF  M +      
Sbjct: 158 VLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGR 217

Query: 163 GTTFLVVLSACCHAGFIDKGLQ 184
             TF  ++ A    G +  G Q
Sbjct: 218 SRTFTTMIRASAGLGLVQVGRQ 239


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 178/301 (59%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S +D +  +  ++  + + W ++I+G+   G  E AL  +  M+   I     T+
Sbjct: 360 YAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTM 419

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   ++  ++GKQ+HA   K G+   V + + L  MYA CG++ D N VF  M  
Sbjct: 420 ASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPS 479

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+++WN+++ G + +G   +A++LFE+++    KPD  TF+ VLSAC H G +++G  Y
Sbjct: 480 RDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVY 539

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F +M ++  +  PR EHY  +V +L RAG L+E + FI S + + G  +++ LL AC+ +
Sbjct: 540 FRMMLDEFGI-VPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNY 598

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+   + +++++L   + + Y+LLS++  A    DD   +R LM  RG+ K+PG SW
Sbjct: 599 RNYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSW 658

Query: 306 V 306
           +
Sbjct: 659 I 659



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 1/197 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C    D    +     ++ I+W+A+I G+   G   +AL  F  M   G     
Sbjct: 256 VTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSE 315

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT   ++ A   I   +EGKQ+H    K GY+  ++    LV MYA CG++ DA K F  
Sbjct: 316 FTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDY 375

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + E D+V W S++ G A +G +  A+ L+ +MQ   I P   T   VL AC     +++G
Sbjct: 376 LKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQG 435

Query: 183 LQ-YFYLMRNDASLEPP 198
            Q +   ++   SLE P
Sbjct: 436 KQIHAQTIKYGFSLEVP 452



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 5/248 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +    LD + V+ ++  RN +SW  II+G+       +A + F  MR+     D F  
Sbjct: 158 YCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIY 217

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A+ V      GKQ+H L  K G  S   V N LV MY  CG ++DA K F    +
Sbjct: 218 TSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGD 277

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D ++W++++ G A  G S EA+ LF  M     KP   TF+ V++AC   G +++G Q 
Sbjct: 278 KDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQI 337

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + Y ++     +       TA+V +  + G L +A    + + + P   ++ +++S    
Sbjct: 338 HGYSLKAGYECQ---IYFMTALVDMYAKCGSLVDARKGFDYL-KEPDIVLWTSMISGYAQ 393

Query: 245 HGNREIAV 252
           +G  E A+
Sbjct: 394 NGENETAL 401



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 4/216 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQA--LKCFSEMRQAGIDIDYF 63
           Y++C S +  + V+ S+  ++ +SWN +I G+   G+   +  ++ F  MR      +  
Sbjct: 55  YAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGH 114

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T + +  A         G Q HAL  K     +VFV + L+ MY   G + DA KVF ++
Sbjct: 115 TFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTI 174

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            ER+ VSW +++ G A    + EA +LF  M++ E   D   +  VLSA      +  G 
Sbjct: 175 PERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGK 234

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
           Q   L   +  L      +  A+V + G+ G L++A
Sbjct: 235 QIHCLALKNGLLSIASVGN--ALVTMYGKCGCLDDA 268



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 4/110 (3%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            ++GK +HA + + G  S+V++ N LV +YA CG+I  A  VF S+  +D+VSWN L+ G
Sbjct: 26  LQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLING 85

Query: 138 CAHH---GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +     GYS   ++LF++M+     P+G TF  V +A   +     GLQ
Sbjct: 86  YSQKGTVGYSF-VMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQ 134


>gi|297596280|ref|NP_001042300.2| Os01g0197500 [Oryza sativa Japonica Group]
 gi|255672971|dbj|BAF04214.2| Os01g0197500 [Oryza sativa Japonica Group]
          Length = 906

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 168/302 (55%), Gaps = 6/302 (1%)

Query: 9   CDSSLD----FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           CD +LD     + +  +V   N +SW+A+I GF + G  ++AL+ F  M+Q  +  +  T
Sbjct: 567 CDKALDVLAQMEQIGGTV-APNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPNVVT 625

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + +++ A   +   + G+++H    K   D +  V+N L+ MYA CG ++ A KVF  M 
Sbjct: 626 MATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMK 685

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            RDL+SWNS+L G   HG   EA+ LF  M    ++PDG TF+ VLSAC HAG + +G +
Sbjct: 686 TRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRR 745

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M     +  P  EHYT +V LLGRAG L +A   + +M   P   V+ ALL++C++
Sbjct: 746 LFDRMVRAHKIS-PSMEHYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSCRI 804

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HG+  +A  +   VL         ++L++N+      WD++  +R +    G+RK PG S
Sbjct: 805 HGDAAMAEATIANVLQSEDQSTGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNPGQS 864

Query: 305 WV 306
           W+
Sbjct: 865 WI 866



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 85/172 (49%), Gaps = 3/172 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + V+  ++TR+ ISWN+++AG+   G  ++AL  F++M  A ++ D  T 
Sbjct: 668 YAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTF 727

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR-LVFMYAICGAINDANKVFSSMD 124
            +++ A G      EG+++   + +    S        +V++    G + DA+++  +M 
Sbjct: 728 VAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMP 787

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV-LSACC 174
            R DL  W +LL  C  HG +  A      + ++E +  G   L+  L A C
Sbjct: 788 VRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLITNLYAMC 839



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 80/171 (46%), Gaps = 5/171 (2%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS--GFKEGKQ 83
           + ++W A+++     G     L+ F EM+++G + +  ++   + A          +GK 
Sbjct: 446 DAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGKA 505

Query: 84  MHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           +H   + K      +FV N L+ MY   G ++DA K F     ++ V+WN+L+   A   
Sbjct: 506 IHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAAR 565

Query: 143 YSREAVQLFEQMQKT--EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
              +A+ +  QM++    + P+  ++  V+     +G  D+ L+ F  M+ 
Sbjct: 566 LCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQ 616



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 66/257 (25%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFTITSIVGAIGVISGFKEGK 82
           T + + WN ++        G+ AL  +  MR     + + +T+     A+   +  +   
Sbjct: 309 TTSAVPWNRLLRAHLGRSRGDLALALYRRMRALSPALPNSYTLPL---ALRAAASPRVAS 365

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD------------------ 124
            +HA    +G  +   V  +++  Y+  G   DA +VF +M                   
Sbjct: 366 AVHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSSG 425

Query: 125 ------------------ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
                               D V+W +LL   A  G   + +QLF +MQ++  + +  + 
Sbjct: 426 CDPDAARDAFARMAAAGARPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESM 485

Query: 167 LVVLSACCHAG-------------FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA 213
            V LSAC +AG              + KGL + YL   +            +++ + G+ 
Sbjct: 486 AVALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTN------------SLICMYGKL 533

Query: 214 GFLNEA-ESFINSMSRN 229
           G +++A ++F ++ ++N
Sbjct: 534 GEMDDAKKAFRDATAKN 550


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 172/301 (57%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C +  + + ++  V +++ ISWN +I G+       +A   F+EM    +  +  T+
Sbjct: 443 YVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTM 501

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T I+ A   +S  + G++MHA   + GY  + FV N L+ MY  CGA+  A ++F  +  
Sbjct: 502 TCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSN 561

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++L+SW  ++ G   HG  R+A+ LFEQM+ + I PD  +F  +L AC H+G  D+G ++
Sbjct: 562 KNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRF 621

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  MR +  +E PR +HYT +V LL   G L EA  FI+SM   P  S++ +LL  C++H
Sbjct: 622 FDAMRKEHKIE-PRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIH 680

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N ++A   A+RV +L P +   YVLL+N+    + W+    ++  +  RG+R+  G SW
Sbjct: 681 RNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSW 740

Query: 306 V 306
           +
Sbjct: 741 I 741



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQIS----WNAIIAGFCNLGSGEQALKCFSEMRQAGI 58
           +L Y +C    D +N         Q+S    W A+++G+   G   + +  F +M   G+
Sbjct: 136 VLMYLKCG---DLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGV 192

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
             D +TI+ ++  I  +   ++G+ +H L+ K+G+ S   V N L+  YA      DA  
Sbjct: 193 RPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAIL 252

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           VF  M  RD++SWNS++ GC  +G   +A++LF +M     + D  T L VL AC
Sbjct: 253 VFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPAC 307



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 2/186 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C        ++ ++  +N +SW A+I  +   G  ++    F EM   G   D F I
Sbjct: 342 YSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAI 401

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS + A       K GK +H    + G +  + V N L+ MY  CG + +A  +F  +  
Sbjct: 402 TSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVS 461

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D++SWN+L+ G + +  + EA  LF +M   +++P+  T   +L A      +++G + 
Sbjct: 462 KDMISWNTLIGGYSRNNLANEAFSLFTEML-LQLRPNAVTMTCILPAAASLSSLERGREM 520

Query: 185 YFYLMR 190
           + Y +R
Sbjct: 521 HAYALR 526



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 82/157 (52%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++ + + D   V+  +  R+ ISWN++I+G  + G  ++A++ F  M   G ++D  T+
Sbjct: 241 YAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATL 300

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +     G+ +H    K G+ S   + N L+ MY+ C      NK+F +M +
Sbjct: 301 LSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQ 360

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
           +++VSW +++      G   +   LF++M     +PD
Sbjct: 361 KNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPD 397



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 13/158 (8%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGID-IDYFTITSIVGAIGVISGFKEGKQMHALI- 88
           N  I   C  G  E+AL         G D +D  +  +++     +   + GK+ H L+ 
Sbjct: 65  NLHIQRLCRSGDLEEALGLL------GSDGVDDRSYGAVLQLCSEVRSLEGGKRAHFLVR 118

Query: 89  -FKIGYDS--NVFVQNRLVFMYAICGAINDANKVFSSMDE-RDLVSWNSLLLGCAHHGYS 144
              +G D   NV  Q +LV MY  CG + +A +VF  M +  D+  W +L+ G A  G  
Sbjct: 119 ASSLGRDGMDNVLGQ-KLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDL 177

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           RE V LF +M    ++PD  T   VL      G I+ G
Sbjct: 178 REGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDG 215


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 173/304 (56%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C S  D Q V+  +  +  + WN+IIAG+   G  E+AL  + EMR +G+ ID 
Sbjct: 274 IDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDN 333

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT + I+     ++  +  KQ HA + + G+  ++     LV +Y+  G I DA  VF  
Sbjct: 334 FTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDM 393

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  ++++SWN+L+ G  +HG   EAV++FE+M    + P+  TFL VLSAC ++G  D+G
Sbjct: 394 MPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRG 453

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + F  M  D  ++ PRA HY  ++ LLGR G L+EA + I      P  +++ ALL+AC
Sbjct: 454 WEIFESMSRDHKIK-PRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTAC 512

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH N E+   +A+++  + P   + YV+L N+   +   ++A  +   +  RG+R  P 
Sbjct: 513 RVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPA 572

Query: 303 YSWV 306
            SW+
Sbjct: 573 CSWI 576



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 138/279 (49%), Gaps = 11/279 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +L + +C   +D + ++  +  +N +SWN II G  + G   +A + F  M Q   D   
Sbjct: 173 LLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGS 232

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
               +++ A   +     G+Q+H+   K G   +VFV   L+ MY+ CG+I DA  VF  
Sbjct: 233 RMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQ 292

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M E+  V WNS++ G A HGYS EA+ ++ +M+ + +K D  TF +++  C     ++  
Sbjct: 293 MPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHA 352

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALL 239
            Q +  L+R+   L+       TA+V L  + G + +A+   + M   P  +V  + AL+
Sbjct: 353 KQAHAGLVRHGFGLD---IVANTALVDLYSKWGRIEDAKHVFDMM---PHKNVISWNALI 406

Query: 240 SACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVS 276
           +    HG    AV   +R+L   + PN      +LS  S
Sbjct: 407 AGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACS 445



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 1/141 (0%)

Query: 45  QALKCFSEMRQAGI-DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRL 103
           +AL+ F  +   G  D+D  T  ++V A   +   +  K++   +   G D + +++NR+
Sbjct: 113 EALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRV 172

Query: 104 VFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG 163
           + M+  CG + DA ++F  M E++++SWN+++ G    G   EA +LF  M +       
Sbjct: 173 LLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGS 232

Query: 164 TTFLVVLSACCHAGFIDKGLQ 184
             F+ ++ A    G I  G Q
Sbjct: 233 RMFVTMIRASAGLGLIFAGRQ 253


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/288 (36%), Positives = 163/288 (56%), Gaps = 1/288 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++  +  ++ + WNA+I G+ +   G++AL  F+EM+   I+ D  T+ S + A   + 
Sbjct: 295 KLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLG 354

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G  +H  I K     NV +   L+ MYA CG I  A +VF  +  R+ ++W +++ 
Sbjct: 355 ALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIIS 414

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A HG +  A+  F +M    + PD  TFL +LSACCH G +++G +YF  M +  +L 
Sbjct: 415 GLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLS 474

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
            P+ +HY+ +V LLGRAG L EAE  I SM       V+ AL  AC++HGN  +  R+A 
Sbjct: 475 -PKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAAS 533

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           ++L + P+D  IYVLL+N+    + W +AG  R LM  RG+ K PG S
Sbjct: 534 KLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCS 581



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 129/286 (45%), Gaps = 42/286 (14%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
            R+ +SWN++I G+   G   +AL  + EM+  GI  D  T+  +V +   +     G++
Sbjct: 170 VRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRE 229

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD------------------- 124
            H  I + G    V + N L+ MY  CG +  A K+F SM                    
Sbjct: 230 SHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGL 289

Query: 125 ------------ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
                       ++D+V WN+++ G  H    +EA+ LF +MQ   I PD  T +  LSA
Sbjct: 290 LDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSA 349

Query: 173 CCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPG 231
           C   G +D G+  + Y+ +++ SL        TA++ +  + G + +A   I      PG
Sbjct: 350 CSQLGALDVGIWIHHYIEKHELSLNVALG---TALIDMYAKCGKITKA---IQVFQELPG 403

Query: 232 PS--VYKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLS 273
            +   + A++S   +HGN   A+     ++D  + P++     LLS
Sbjct: 404 RNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLS 449



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 13  LDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFTITSIVG 70
           LD+  N+  + R  N  SWN  I GF +  +  +A+  +  + Q  G   D +T   +  
Sbjct: 56  LDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFK 115

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
           A   +S  + G ++   +  +G+DS++FV N ++ +   CG ++ A K+F     RDLVS
Sbjct: 116 ACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVS 175

Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLM 189
           WNS++ G    G++ EA+  + +M+   IKPD  T + V+S+C     +D G + + Y+ 
Sbjct: 176 WNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIE 235

Query: 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
            N   L  P A    A++ +  + G L  A    +SM+
Sbjct: 236 ENGLKLTVPLA---NALMDMYMKCGNLESARKLFDSMT 270



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 2/139 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        V+  +  RN ++W AII+G    G+   A+  FSEM    +  D  T 
Sbjct: 385 YAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTF 444

Query: 66  TSIVGAIGVISGFKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A       +EG++  + +  K      +   + +V +    G + +A ++  SM 
Sbjct: 445 LGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMP 504

Query: 125 -ERDLVSWNSLLLGCAHHG 142
            E D V W +L   C  HG
Sbjct: 505 IEADAVVWGALFFACRIHG 523


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 176/305 (57%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           I  +S+  +    +  +  + T+N I+WNA++  +   G+ E  L+ ++ M  +  +  D
Sbjct: 444 ITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPD 503

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           + T  ++      +   K G Q+     K+G   +  V N ++ MY+ CG I +A KVF 
Sbjct: 504 WVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFD 563

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            ++ +D+VSWN+++ G + HG  ++A+++F+ + K   KPD  +++ VLS C H+G + +
Sbjct: 564 FLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQE 623

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G  YF +M+   ++ P   EH++ +V LLGRAG L EA+  I+ M   P   V+ ALLSA
Sbjct: 624 GKSYFDMMKRVHNISPG-LEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSA 682

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++HGN E+A  +AK V +L   D   Y+L++ +       DD+  IR LM ++GI+K P
Sbjct: 683 CKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNP 742

Query: 302 GYSWV 306
           GYSW+
Sbjct: 743 GYSWM 747



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 102/203 (50%), Gaps = 4/203 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    + + V++S+  RN ++W  +IAGF   G   ++++ F++MR   + +D F +
Sbjct: 315 YAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFAL 374

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++           G+Q+H+L  K G    V V N L+ MYA C  +  A  +F  M+E
Sbjct: 375 ATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNE 434

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+VSW S++   +  G   +A + F+ M    +     T+  +L A    G  + GL+ 
Sbjct: 435 KDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNV----ITWNAMLGAYIQHGAEEDGLRM 490

Query: 186 FYLMRNDASLEPPRAEHYTAIVG 208
           + +M ++  + P    + T   G
Sbjct: 491 YNVMLSEKDVRPDWVTYVTLFKG 513



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 103/213 (48%), Gaps = 2/213 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++ S+  R+ +SWN +++     G   +AL    +M+  G+ +D  T TS + A   +S
Sbjct: 225 ELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLS 284

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             + GKQ+HA + +     + +V + LV +YA CG   +A  VF+S+ +R+ V+W  L+ 
Sbjct: 285 SLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIA 344

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G   HG   E+V+LF QM+   +  D      ++S CC    +  G Q   L      ++
Sbjct: 345 GFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQ 404

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
                +  +++ +  +   L  AES    M+  
Sbjct: 405 AVVVSN--SLISMYAKCDNLQSAESIFRFMNEK 435



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 36/246 (14%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIVGAI 72
           D   ++  +  R+  SWN +++G+        +L+ F  M ++G    + FT    + + 
Sbjct: 89  DAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSC 148

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF------------ 120
           G +       Q+  ++ K G   +  V   LV M+  CG ++ A+++F            
Sbjct: 149 GALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRN 208

Query: 121 -------------------SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
                               SM ERD+VSWN ++   +  G  REA+ +   MQ   ++ 
Sbjct: 209 SMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRL 268

Query: 162 DGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220
           D TT+   L+AC     +  G Q +  ++RN   ++P  A   +A+V L  + G   EA+
Sbjct: 269 DSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVA---SALVELYAKCGCFKEAK 325

Query: 221 SFINSM 226
              NS+
Sbjct: 326 GVFNSL 331



 Score = 43.9 bits (102), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 72/184 (39%), Gaps = 38/184 (20%)

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANK-------------------------- 118
           H  +  +G  S VF+QN L+  Y  CGA+ DA +                          
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGR 86

Query: 119 ------VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT-EIKPDGTTFLVVLS 171
                 +F  M  RD+ SWN+L+ G         +++ F  M ++ +  P+  TF   + 
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMK 146

Query: 172 ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPG 231
           +C   G     LQ   +++   S +   ++   A+V +  R G ++ A        R   
Sbjct: 147 SCGALGERSLALQLLGMVQKFGSQDD--SDVAAALVDMFVRCGTVDLASRLF---VRIKE 201

Query: 232 PSVY 235
           P+++
Sbjct: 202 PTIF 205


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/281 (37%), Positives = 162/281 (57%), Gaps = 1/281 (0%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N +SW +I+A     G   +A+  F EM+  GI+ +  TI  ++ A   I+    G+  H
Sbjct: 256 NVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAH 315

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
               + G+  +++V + LV MYA CG + DA  +F +M  R++VSWN+++ G A HG + 
Sbjct: 316 CFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAE 375

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205
            AV+LF  MQ ++ KPD  TF  VL AC  AG+ ++G  YF  M++   +  PR EHY  
Sbjct: 376 NAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGIS-PRMEHYAC 434

Query: 206 IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265
           +V LLGRAG L++A   IN M   P   ++ +LL +C+VHGN  +A  +A+ +  L P +
Sbjct: 435 MVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPEN 494

Query: 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
              YVLLSN+  +   WD    +R +M   G++K+ G SW+
Sbjct: 495 AGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWI 535



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 106/268 (39%), Gaps = 48/268 (17%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           N I+WN +++G    G    A+     M   G   D   ++  + A+G +     G+Q+H
Sbjct: 120 NVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLH 179

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF---SSMD------------------ 124
             + K G   +  V   L+ MY  CG  ++  +VF   S MD                  
Sbjct: 180 GYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVS 239

Query: 125 --------------ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
                         E ++VSW S++  C  +G   EAV LF +MQ   I+P+  T   VL
Sbjct: 240 EALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVL 299

Query: 171 SACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY-----TAIVGLLGRAGFLNEAESFINS 225
            A  +   +  G       R+       +  H+     +A+V +  + G + +A     +
Sbjct: 300 PAFANIAALMHG-------RSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEA 352

Query: 226 MSRNPGPSVYKALLSACQVHGNREIAVR 253
           M      S + A++    +HG  E AVR
Sbjct: 353 MPYRNVVS-WNAMIGGYAMHGEAENAVR 379



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D + ++ ++  RN +SWNA+I G+   G  E A++ F  M+ +    D  T 
Sbjct: 337 YAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTF 396

Query: 66  TSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           T ++GA       +EG+   + +  K G    +     +V +    G ++DA  + + M 
Sbjct: 397 TCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMP 456

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            E D   W SLL  C  HG    A    E +   +++P+     V+LS
Sbjct: 457 FEPDGCIWGSLLGSCRVHGNVVLAEVAAENL--FQLEPENAGNYVLLS 502



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%)

Query: 92  GYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLF 151
           G   + FV + L+  Y   GA  DA  V   M  R +V W++L+   A HG +  A  L 
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 152 EQMQKTEIKPDGTTF 166
           E+M+   ++P+  T+
Sbjct: 110 ERMRSDGVEPNVITW 124



 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 4/95 (4%)

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E ++++WN L+ G    G +R+AV    +M      PD T     LSA    G +  G Q
Sbjct: 118 EPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQ 177

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218
            + Y+++    L+   A   TA++ + G+ G  +E
Sbjct: 178 LHGYVVKAGCRLDACVA---TALIDMYGKCGRADE 209


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/292 (35%), Positives = 169/292 (57%), Gaps = 2/292 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFTITSIVGAIGV 74
           + ++  +  RN  SWN +I G+ + G   + L+CF  M   G+ + +  T+ +++ A   
Sbjct: 313 EQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACAR 372

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +     GK +H     IG+  +++V N L+ MY+ CG I +A +VF SMD +DL++WNS+
Sbjct: 373 LGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSM 432

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + G A HG   +A+ LF QM+    KPDG TF+ VL +C H G +++G  YF  M N+ S
Sbjct: 433 ICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYS 492

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           +  P+ EHY  +V L GRAG L+ A  F+  M       ++ ALL AC+++ N ++A  +
Sbjct: 493 I-APQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELA 551

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            ++++ L P +PA YVLLSN+      W D   ++ LM + G +K PG S +
Sbjct: 552 LQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLI 603



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 58/108 (53%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WNAI  G+ +     + +  F +M+   +  + FT   ++ +   I  F EG+++H  + 
Sbjct: 133 WNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVI 192

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           K G + N FV   L+ +Y+   AI  A K+F  M ER++V+W S++ G
Sbjct: 193 KGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISG 240



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 32/127 (25%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +F +  + +V + N +V  Y   G +  A K+F +M  RD +SWN++L G A++G     
Sbjct: 253 LFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEAC 312

Query: 148 VQLFEQMQKTE--------------------------------IKPDGTTFLVVLSACCH 175
            QLFE+M +                                  + P+  T + VLSAC  
Sbjct: 313 EQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACAR 372

Query: 176 AGFIDKG 182
            G +D G
Sbjct: 373 LGALDLG 379



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 50/101 (49%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
           +++ A I   G+  N +V   +V  +     +  A  +F    +  +  WN++  G  H+
Sbjct: 84  QKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHN 143

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            + RE V LF +M+  +++P+  TF +VL +C   G   +G
Sbjct: 144 AFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEG 184



 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 2/135 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    +   V+ S+  ++ I+WN++I G    G G  AL  F +M+  G   D  T 
Sbjct: 405 YSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITF 464

Query: 66  TSIVGAIGVISGFKEGKQ-MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ +   +   +EG    ++++ +      +     +V ++   G ++ A +    M 
Sbjct: 465 IGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMP 524

Query: 125 -ERDLVSWNSLLLGC 138
            E D V W +LL  C
Sbjct: 525 MEADAVIWAALLGAC 539


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 163/304 (53%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ Y+  ++     N++  +  +N ISWN +IA + N     +A+  F +M + G+  D 
Sbjct: 247 VVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDA 306

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            TI S++ A G +S    G+++H  I K     N+ ++N L+ MYA CG + +A  VF  
Sbjct: 307 VTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDK 366

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD+VSW S++      G   +AV LF +M  +   PD   F+ VLSAC H G +D+G
Sbjct: 367 MRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQG 426

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             YF +M     +  PR EH+  +V L GRAG + EA SFI  M   P   V+ ALLSAC
Sbjct: 427 RHYFRMMTEQYGI-VPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSAC 485

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VH   +I + +A  +  L P     YVLLSN+      W D  ++R  M   GI+K PG
Sbjct: 486 RVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPG 545

Query: 303 YSWV 306
            S V
Sbjct: 546 ISNV 549



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 7/221 (3%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           +N + +N +I  + N     +AL  F  M     + D++T   ++ A   +   + G Q+
Sbjct: 100 KNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQV 159

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H  I K+G D+N+F+ N LV MY  CG + +A KV   M  RD+VSWNS++ G A  G  
Sbjct: 160 HDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQF 219

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
            +A+++ ++M    +  D  T   +    C+     + +QY + M     +       + 
Sbjct: 220 DDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL--ENVQYIHNMFE--RMTKKNLISWN 275

Query: 205 AIVGLLGRAGFLNEAESFINSMSR---NPGPSVYKALLSAC 242
            ++ +       NEA S    M      P      +LL AC
Sbjct: 276 VMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPAC 316



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 112/268 (41%), Gaps = 40/268 (14%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y +C    + + V   +  R+ +SWN+++AG+   G  + AL+   EM    ++ D 
Sbjct: 179 VAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDA 238

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S+   +   S           +  + Y  N                      +F  
Sbjct: 239 GTMASLSPVVCYTS-----------LENVQYIHN----------------------MFER 265

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--CHAGFID 180
           M +++L+SWN ++    ++    EAV LF QM++  +KPD  T   +L AC    A F+ 
Sbjct: 266 MTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLG 325

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           + L + Y+ + +     P      A++ +  + G L EA    + M      S + +++S
Sbjct: 326 RRL-HKYIEKGNLR---PNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVS-WTSMMS 380

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAI 268
           A    G    AV    ++LD   N  +I
Sbjct: 381 AYGRSGQGYDAVALFAKMLDSGQNPDSI 408



 Score = 42.0 bits (97), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)

Query: 102 RLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
           +L+  Y+  G  + A  +F    E+++V +N ++    ++    EA+ +F+ M      P
Sbjct: 76  KLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNP 135

Query: 162 DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY---TAIVGLLGRAGFLNE 218
           D  TF  VL AC     +  GLQ      +DA ++     +     A+V + G+ G L E
Sbjct: 136 DHYTFPCVLKACSGLDNLRVGLQV-----HDAIVKVGLDTNLFIGNALVAMYGKCGCLRE 190

Query: 219 AESFINSM 226
           A   ++ M
Sbjct: 191 ARKVLDQM 198


>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
          Length = 485

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 165/289 (57%), Gaps = 2/289 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +V+  +  R+ ISW A+I GF   G  E+AL  F EM+ +G++ DY  I S V A   + 
Sbjct: 146 DVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAVAACTNLG 205

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G  +H  +    + +NV V N L+ +Y  CG +  A +VF  M++R +VSWNS+++
Sbjct: 206 ALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIV 265

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A +G + E++  F +MQ+    PDG TF   L+AC H G +++G QYF +M++D  + 
Sbjct: 266 GFAANGNANESLVYFRKMQREGFTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRIS 325

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREI-AVRSA 255
            PR EHY  +V L  RAG L +A   + SM   P   V  +LL+AC+ HGN  I A R  
Sbjct: 326 -PRIEHYGCLVDLYSRAGRLEDAFIVVESMPMKPNEVVIGSLLAACRNHGNHTILAERLM 384

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           K + DL     + YV+LSN+  A   W+ A  +R  M   G++K+PGYS
Sbjct: 385 KYITDLDVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGYS 433



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 34/190 (17%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG------ 81
           +SW + I      G   +A++ FS+MR AGI+ ++ T  +++ A G      EG      
Sbjct: 22  VSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNFPSGSEGLGYLLH 81

Query: 82  ------------------------KQMH----ALIFKIGYDSNVFVQNRLVFMYAICGAI 113
                                   K  H     L+F    D N    N ++  Y   G +
Sbjct: 82  GYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMIDGYMRNGQV 141

Query: 114 NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           ++A  VF  M +RDL+SW +++ G    G+  EA+  F +MQ + + PD    +  ++AC
Sbjct: 142 DNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAVAAC 201

Query: 174 CHAGFIDKGL 183
            + G +  GL
Sbjct: 202 TNLGALSFGL 211



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 5/159 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC      + V+  +  R  +SWN++I GF   G+  ++L  F +M++ G   D  T 
Sbjct: 236 YCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTF 295

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVFSSM 123
           T  + A   +   +EG Q   ++ K  Y  +  +++   LV +Y+  G + DA  V  SM
Sbjct: 296 TGALTACSHVGLVEEGFQYFQMM-KHDYRISPRIEHYGCLVDLYSRAGRLEDAFIVVESM 354

Query: 124 DER-DLVSWNSLLLGCAHHG-YSREAVQLFEQMQKTEIK 160
             + + V   SLL  C +HG ++  A +L + +   ++K
Sbjct: 355 PMKPNEVVIGSLLAACRNHGNHTILAERLMKYITDLDVK 393



 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query: 114 NDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           N AN     +++     +VSW S +   +  G   EAV+ F  M+   I+P+  TF+ +L
Sbjct: 4   NHANPKIQKLNQSTSETIVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALL 63

Query: 171 SACCHAGFIDKGLQYFYLMRNDA---SLEPPRAEHYTAIVGLLGRAGFLNEA 219
           SAC +     +GL   YL+   A    LE       TAI+G+  ++G L +A
Sbjct: 64  SACGNFPSGSEGLG--YLLHGYACKLGLERSHVMVGTAILGMYSKSGHLRKA 113


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    + + V+  +R R+ ++WN++I+G+   G  ++A++ F  M++ G++ +  T 
Sbjct: 156 YGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATF 215

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +  F  G  +H      G D NV +   L+ MY  CG ++ A +VF SM E
Sbjct: 216 VSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKE 275

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++V+W +++ G   +GY  +AV+LF +M++  + P+  TF+ VLSAC HAG +++G + 
Sbjct: 276 RNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRV 335

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  MR +  L  P  EH+  +V +LGRAG L+EA +FI  +   P P+++ A+L AC++H
Sbjct: 336 FESMREEYRL-VPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMH 394

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +  + A+  L   P +PA YV+LSN+       D    +R  M  + ++K+ GYS 
Sbjct: 395 KNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYST 454

Query: 306 V 306
           +
Sbjct: 455 I 455



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 124/236 (52%), Gaps = 7/236 (2%)

Query: 46  ALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105
           +L  ++ M  + +    +T TS++ +   +   + G+ +H  +   G+ S+V+VQ  L+ 
Sbjct: 95  SLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMS 154

Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
            Y  CG + +A KVF  M +R +V+WNS++ G   +G+++EA++LF++M++  ++P+  T
Sbjct: 155 FYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSAT 214

Query: 166 FLVVLSACCHAG-FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
           F+ VLSAC H G FI     + Y + N   L        T+++ +  R G +++A    +
Sbjct: 215 FVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLG---TSLINMYTRCGNVSKAREVFD 271

Query: 225 SMSRNPGPSVYKALLS--ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
           SM +      + A++S      +G++ + +    R   L PN      +LS  + A
Sbjct: 272 SM-KERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHA 326



 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 90/196 (45%), Gaps = 10/196 (5%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH-H 141
           Q+HA +   GY  + F+  +L+ +    G+I+   ++F  +   D   + SL+   +  H
Sbjct: 30  QVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKFH 89

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAE 201
            +S  ++  + +M  + + P   TF  V+ +C  A  +   L++  ++     +    ++
Sbjct: 90  NFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSC--ADLV--ALRHGRIIHGHVLVNGFGSD 145

Query: 202 HY--TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV- 258
            Y  TA++   G+ G L  A    + M R+     + +++S  + +G  + A+R   R+ 
Sbjct: 146 VYVQTALMSFYGKCGVLCNARKVFDKM-RDRSVVTWNSMISGYEQNGFAKEAIRLFDRMK 204

Query: 259 -LDLWPNDPAIYVLLS 273
            + + PN      +LS
Sbjct: 205 EIGVEPNSATFVSVLS 220


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 173/306 (56%), Gaps = 2/306 (0%)

Query: 1   LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           L +    RC   +  Q V++ +  +N I W  +I G    G  ++A++ F     +G+  
Sbjct: 256 LDMYVKCRCLLPMAMQ-VFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRA 314

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D   ++S+VG     +  ++G+Q+H    K     +V V N L+ MY  CG  ++A + F
Sbjct: 315 DGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRF 374

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             +  R++VSW +++ G   HG+ +EA+ +FE+M+   ++PD   +L +LSAC H+G ++
Sbjct: 375 REVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVE 434

Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           +  +YF  +R+D  L  PRAEHY  +V LLGRAG L+EA+  + +M   P   V++ LLS
Sbjct: 435 ECRRYFSAIRHDRRLR-PRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLS 493

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
           AC+VH N  +   + + +L +  ++P  YV+LSN+      W +   +R  M  RG+RK+
Sbjct: 494 ACRVHKNVTVGREAGETLLAIDGDNPVNYVMLSNIFAEAGDWRECQRVRGAMRRRGLRKQ 553

Query: 301 PGYSWV 306
            G SWV
Sbjct: 554 GGCSWV 559



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 6/193 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDID 61
           I  Y++C        V+  +  RN +SW A++ GF   G   + L+    MR  + +  +
Sbjct: 46  IDMYAKCGELRMAGEVFGGMPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPN 105

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            FT+++ + A GV+     G  +H    + G++ +  V N LV +Y+  G I DA +VF 
Sbjct: 106 EFTLSASLKACGVVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFD 165

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK-----TEIKPDGTTFLVVLSACCHA 176
               R+LV+WN+++ G AH G+ R+++ +F +MQ+      + +PD  TF  +L AC   
Sbjct: 166 GTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSL 225

Query: 177 GFIDKGLQYFYLM 189
           G   +G Q    M
Sbjct: 226 GAAREGAQVHAAM 238



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 142/288 (49%), Gaps = 17/288 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID--- 59
           +L YS+     D + V+     RN ++WNA+I+G+ + G G  +L  F EM+Q   +   
Sbjct: 148 VLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEED 207

Query: 60  --IDYFTITSIVGAIGVISGFKEGKQMHA--LIFKIGYDSNVFVQNRLVFMYAICGAIND 115
              D FT  S++ A G +   +EG Q+HA  +I  +   SN  +   L+ MY  C  +  
Sbjct: 208 HQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLP 267

Query: 116 -ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
            A +VF+ +++++ + W ++++G A  G  +EA++LF +   + ++ DG     V+    
Sbjct: 268 MAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGVFA 327

Query: 175 HAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE-AESFINSMSRNPGP 232
               +++G Q + Y ++  A L+   A    +++ +  + G  +E A  F    +RN   
Sbjct: 328 DFALVEQGRQVHCYTVKTPAGLDVSVA---NSLIDMYHKCGLTDEAARRFREVPARN--V 382

Query: 233 SVYKALLSACQVHGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKA 278
             + A+++    HG+ + A+      R   + P++ A   LLS  S +
Sbjct: 383 VSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHS 430



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I  ++ A    S    G Q+H  + K+G+ S+  + N L+ MYA CG +  A +VF  M 
Sbjct: 7   IADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMP 66

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK-TEIKPDGTTFLVVLSACCHAGFIDKGL 183
           ER++VSW +L++G   HG +RE ++L   M+  +++ P+  T    L AC   G +  G+
Sbjct: 67  ERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGV 126


>gi|330689867|gb|AEC33263.1| putative pentatricopeptide protein [Triticum aestivum]
          Length = 644

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 167/304 (54%), Gaps = 10/304 (3%)

Query: 9   CDSSLDFQNVYSSVRTR------NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           CD +L   NV   +  R      N +SW+A+I GF + G  E+AL+ F  M+Q  +  + 
Sbjct: 295 CDEAL---NVLVRMEQRGGMVAPNVMSWSAVIGGFASSGDNERALELFRRMQQQWLSPNV 351

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ +++ A       + G+++HA   +   D +  V N L+ MYA CG + DA  VF  
Sbjct: 352 VTLATVLSACTEQLAVRLGREVHADAIRSMVDRHSLVANGLINMYAKCGRVADARTVFDG 411

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RDLVSWNS+L G   HG   +A+ +F  M + ++ PDG TF+ VLSAC HAG + +G
Sbjct: 412 MKSRDLVSWNSMLAGYGMHGLCDDALAVFTDMAEAKVDPDGVTFVAVLSACSHAGRVSEG 471

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + F  M  +  + P   EHYT +V LLGRAG L EA  FI +M       V+ ALL++C
Sbjct: 472 RRLFDQMILEHKISPS-MEHYTCMVDLLGRAGLLKEASEFIETMPMGADLCVWGALLNSC 530

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HG+  +A  +  + L         + L++N+  A   WDD+  +R +    G+RK PG
Sbjct: 531 RIHGDAAMAEATIAKALQAGVVTTGNHTLITNLYAACGMWDDSKRVRVMTREAGLRKNPG 590

Query: 303 YSWV 306
            SWV
Sbjct: 591 QSWV 594



 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 83/172 (48%), Gaps = 3/172 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D + V+  +++R+ +SWN+++AG+   G  + AL  F++M +A +D D  T 
Sbjct: 396 YAKCGRVADARTVFDGMKSRDLVSWNSMLAGYGMHGLCDDALAVFTDMAEAKVDPDGVTF 455

Query: 66  TSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            +++ A        EG+++   +I +     ++     +V +    G + +A++   +M 
Sbjct: 456 VAVLSACSHAGRVSEGRRLFDQMILEHKISPSMEHYTCMVDLLGRAGLLKEASEFIETMP 515

Query: 125 E-RDLVSWNSLLLGCAHHGYSREA-VQLFEQMQKTEIKPDGTTFLVVLSACC 174
              DL  W +LL  C  HG +  A   + + +Q   +     T +  L A C
Sbjct: 516 MGADLCVWGALLNSCRIHGDAAMAEATIAKALQAGVVTTGNHTLITNLYAAC 567



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 81/171 (47%), Gaps = 5/171 (2%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS--GFKEGKQ 83
           + ++W  +++     G     L+ F +M ++G + +  ++   + A          +G+ 
Sbjct: 174 DAVTWTTLLSAHARCGKHPVVLELFGDMHRSGCEGNAESVAVALSACPYAGDLALAKGRA 233

Query: 84  MHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           +H   + K      +FV N LV MY   G ++DA +VF    ER+ V+WN+L+   A  G
Sbjct: 234 IHGYGVAKGVVRGYLFVTNSLVCMYGKLGKMDDAREVFREAGERNTVTWNALITSYAAAG 293

Query: 143 YSREAVQLFEQMQKT--EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
              EA+ +  +M++    + P+  ++  V+     +G  ++ L+ F  M+ 
Sbjct: 294 MCDEALNVLVRMEQRGGMVAPNVMSWSAVIGGFASSGDNERALELFRRMQQ 344



 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 101 NRLVFMYAICGAINDANKVFSSMDER-----DLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           N L+  Y++C   N+A   F+ M        D V+W +LL   A  G     ++LF  M 
Sbjct: 143 NTLISAYSVCCDPNNAMATFARMAAAGEALPDAVTWTTLLSAHARCGKHPVVLELFGDMH 202

Query: 156 KTEIKPDGTTFLVVLSACCHAG 177
           ++  + +  +  V LSAC +AG
Sbjct: 203 RSGCEGNAESVAVALSACPYAG 224


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 104/280 (37%), Positives = 162/280 (57%), Gaps = 1/280 (0%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           +N  SW ++I+GF   G   +A+  F ++    +  +  T+ S++ A   +     G+ +
Sbjct: 105 KNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIV 164

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H    K G+  NV V N L+ MY  CG + +A +VF  M+ER +VSW++++ G A HG +
Sbjct: 165 HEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQA 224

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
            EA+ LF +M K  +KP+G TF+ +L AC H G ID+G ++F  M  D  +  P+ EHY 
Sbjct: 225 EEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGV-IPQIEHYG 283

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
            +V L  RAG L EA  FI SM   P   V+ ALL  C+VH N ++A  + K + +L P 
Sbjct: 284 CVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPL 343

Query: 265 DPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           +   YV++SN+    + W+DA  +R LM +RG++K  G+S
Sbjct: 344 NDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWS 383



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 38/233 (16%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           MR   +  D FT + ++ A   +S    GK +H L  K+G+ SN+F+QN ++ +Y +CG 
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 113 INDANKVFSSMDERDLVSWN-------------------------------SLLLGCAHH 141
           + DA  +F  M +RD V+WN                               S++ G    
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQYFYLMRNDASLEPPRA 200
           G   EA+ LF +++   ++P+  T + VL+AC   G +D G + + Y  ++       R 
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFK----RN 176

Query: 201 EHY-TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            H    ++ +  + G L  A      M      S + A+++   +HG  E A+
Sbjct: 177 VHVCNTLIDMYVKCGCLENARRVFYEMEERTVVS-WSAMIAGLAMHGQAEEAL 228



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    + + V+  +  R  +SW+A+IAG    G  E+AL  FSEM + G+  +  T 
Sbjct: 187 YVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTF 246

Query: 66  TSIVGAIGVISGFKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A   +    EG++  A +    G    +     +V +++  G + +A++   SM 
Sbjct: 247 IGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMP 306

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLS 171
            + + V W +LL GC  H    + + L E+  K  +E+ P    + VV+S
Sbjct: 307 IKPNGVVWGALLGGCKVH----KNIDLAEEAIKHLSELDPLNDGYYVVIS 352


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 173/304 (56%), Gaps = 2/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    D + V+  ++ ++ + W A+ +G+      E++LK +  ++ + +  + 
Sbjct: 486 IDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNE 545

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT  +++ A   I+  + G+Q H  + K+G+D + FV N LV MYA  G+I +A+K F S
Sbjct: 546 FTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFIS 605

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            + +D   WNS++   A HG + +A+Q+FE M    +KP+  TF+ VLSAC H G +D G
Sbjct: 606 TNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLG 665

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             +F  M +   +EP   EHY  +V LLGRAG L EA+ FI  M       V+++LLSAC
Sbjct: 666 FDHFDSM-SQFGIEPG-IEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSAC 723

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +V GN E+   +A+  +   P D   YVLLSN+  +   W +   +R  M   G+ K+PG
Sbjct: 724 RVSGNVELGTYAAEMAISCNPADSGSYVLLSNIFASKGMWVNVRRLREKMDISGVVKEPG 783

Query: 303 YSWV 306
            SW+
Sbjct: 784 CSWI 787



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 90/165 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + ++  +  +N +SW  +IAG         AL  F EM + G + D F  
Sbjct: 287 YFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGC 346

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ + G +   ++G+Q+HA   K+  D++ FV+N L+ MYA C ++ DA KVF+ M  
Sbjct: 347 TSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAA 406

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
            DLVS+N+++ G +      EA+ LF +M+ +   P    F+ +L
Sbjct: 407 IDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLL 451



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 126/249 (50%), Gaps = 5/249 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++CDS  D + V++ +   + +S+NA+I G+       +AL  F EMR +         
Sbjct: 388 YAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIF 447

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++G    +   +   Q+H LI K G   + F  + L+ +Y+ C  + DA  VF  + +
Sbjct: 448 VSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQD 507

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+V W ++  G      + E+++L++ +Q + +KP+  TF  V++A  +   +  G Q+
Sbjct: 508 KDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQF 567

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSACQV 244
              +      + P   +   +V +  ++G + EA ++FI++  ++   + + ++++    
Sbjct: 568 HNQVIKMGFDDDPFVAN--TLVDMYAKSGSIEEAHKAFISTNWKD--TACWNSMIATYAQ 623

Query: 245 HGNREIAVR 253
           HG  E A++
Sbjct: 624 HGEAEKALQ 632



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 91/171 (53%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  ++ +   +W  IIAG+   G  + +LK F +M++  +  D + ++S++ A  
Sbjct: 194 DARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACL 253

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           ++   + GKQ+H  + + G   +V + N  +  Y  C  +    K+F  M ++++VSW +
Sbjct: 254 MLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTT 313

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ++ GC  + + R+A+ LF +M +    PD      VL++C     ++KG Q
Sbjct: 314 VIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQ 364



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 97/188 (51%), Gaps = 2/188 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSE-MRQAGIDIDYFT 64
           YS+ +       ++ ++  +N ++W+++++ + +     +AL  F + MR      + + 
Sbjct: 84  YSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYI 143

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + S+V A     G     Q+H L+ K GY  +V+V   L+  Y     I+DA  +F  + 
Sbjct: 144 LASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQ 203

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +   +W +++ G +  G S+ +++LF+QM++  + PD      VLSAC    F++ G Q
Sbjct: 204 VKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQ 263

Query: 185 -YFYLMRN 191
            + Y++R+
Sbjct: 264 IHCYVLRS 271



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 2/105 (1%)

Query: 82  KQMHALIFKIGYDS-NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           K++H+ I   G+   ++F+ N L+  Y+    +N ANK+F +M  ++LV+W+S++    H
Sbjct: 58  KKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTH 117

Query: 141 HGYSREAVQLFEQ-MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           H +  EA+ LF Q M+    KP+      V+ AC   G ++  LQ
Sbjct: 118 HSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQ 162


>gi|224058449|ref|XP_002299515.1| predicted protein [Populus trichocarpa]
 gi|222846773|gb|EEE84320.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 169/304 (55%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y RC+S  + + V++ +   N +  N +I  F   G    AL  +  +      +D 
Sbjct: 215 ITAYGRCNSMDESKRVFAEIDKVNLVHLNTMITTFVRAGYYTDALALYQTIWSLHRKVDS 274

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T + I+ A   I+  + G+ +H+L+ K G+D + FV++ ++ +Y  CG+I  A K F S
Sbjct: 275 RTFSIILKACSAITDMQLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCGSIGQAEKAFRS 334

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
                L +WN++++G AHHG  +E   LF +M +  I+PD  T+L VLS+CCH G + + 
Sbjct: 335 SSMNSLAAWNAMMMGYAHHGCYQEVFDLFNKMSQFGIEPDEITYLGVLSSCCHGGLVKEA 394

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
             Y   M     +  P  EHY  ++ LLGR G L +A+  I+ M   P   +++ LLSAC
Sbjct: 395 RHYLDSMFELHGI-IPHLEHYACMIDLLGRVGLLEDAKKTIDHMPIQPDVHIWQILLSAC 453

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            +HG+ E+   +A+++L++ P + + Y+LLSN+  +   W+  G +R  M  + +RK+PG
Sbjct: 454 NIHGHVELGRVAARKLLEIHPENESAYILLSNLYASVGMWNAVGRLRKEMKEKNLRKEPG 513

Query: 303 YSWV 306
            SW+
Sbjct: 514 SSWI 517



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 122/269 (45%), Gaps = 35/269 (13%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC   +D   V+  +   + +SW   I        G +A++ F  +   G+D++ +T+
Sbjct: 19  YARCGREVDAIKVFDEIAEPDVVSWTERIG---TASDGHEAVELFRIVLSLGLDVNEYTL 75

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++  IG +     GKQ+ AL  K GY   V V N LV MY  CG I DA +VF +M  
Sbjct: 76  INVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQICDACRVFYNMII 135

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD VSWNSL+  C+ +G+  +A+++F QM++  ++P   T   +L A  ++    + +Q 
Sbjct: 136 RDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNSNNTKQVIQI 195

Query: 186 FYLM-----------------------------RNDASLEPPRAEHYTAIVGLLGRAGFL 216
             L+                             R  A ++     H   ++    RAG+ 
Sbjct: 196 HSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTMITTFVRAGYY 255

Query: 217 NEAESF---INSMSRNPGPSVYKALLSAC 242
            +A +    I S+ R      +  +L AC
Sbjct: 256 TDALALYQTIWSLHRKVDSRTFSIILKAC 284



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 120/241 (49%), Gaps = 3/241 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D   V+ ++  R+ +SWN++I+     G   QAL+ F +MR+  +     T+
Sbjct: 117 YGKCGQICDACRVFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTL 176

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A+   +  K+  Q+H+L+ K G+  +V + + L+  Y  C +++++ +VF+ +D+
Sbjct: 177 ASILEAVSNSNNTKQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDK 236

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            +LV  N+++      GY  +A+ L++ +     K D  TF ++L AC     +  G   
Sbjct: 237 VNLVHLNTMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGRAV 296

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             L+      +    E  ++++ +  + G + +AE    S S N   + + A++     H
Sbjct: 297 HSLVLKTGFDQDSFVE--SSVIDIYCKCGSIGQAEKAFRSSSMN-SLAAWNAMMMGYAHH 353

Query: 246 G 246
           G
Sbjct: 354 G 354



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 91/207 (43%), Gaps = 23/207 (11%)

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
           GF  G  MH               N ++ MYA CG   DA KVF  + E D+VSW    +
Sbjct: 2   GFLRGSSMH-------------FSNAVMSMYARCGREVDAIKVFDEIAEPDVVSWTE-RI 47

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A  G+  EAV+LF  +    +  +  T + VLS      F++ G Q   L       +
Sbjct: 48  GTASDGH--EAVELFRIVLSLGLDVNEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQ 105

Query: 197 PPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSACQVHG--NREIAVR 253
                +  A+V + G+ G + +A   F N + R+     + +L+SAC  +G  N+ + V 
Sbjct: 106 VVSVSN--ALVSMYGKCGQICDACRVFYNMIIRDSVS--WNSLISACSENGFVNQALEVF 161

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATD 280
              R L L P    +  +L  VS + +
Sbjct: 162 YQMRELSLQPTIHTLASILEAVSNSNN 188


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 171/291 (58%), Gaps = 2/291 (0%)

Query: 17  NVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           N++   R   + +SWN I+          + L+ F  M  +  + D+ T+ +++     I
Sbjct: 427 NLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEI 486

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S  K G Q+H    K G     F++N L+ MYA CG++  A ++F SMD RD+VSW++L+
Sbjct: 487 SSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLI 546

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           +G A  G+  EA+ LF++M+   I+P+  TF+ VL+AC H G +++GL+ +  M+ +  +
Sbjct: 547 VGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGI 606

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
            P + EH + +V LL RAG LNEAE FI+ M   P   V+K LLSAC+  GN  +A ++A
Sbjct: 607 SPTK-EHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAA 665

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +L + P +   +VLL ++  ++  W++A  +R+ M    ++K PG SW+
Sbjct: 666 ENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWI 716



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 131/275 (47%), Gaps = 6/275 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D + V+  +  RN +S+ ++I G+   G G +A++ + +M Q  +  D F  
Sbjct: 112 YGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAF 171

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A    S    GKQ+HA + K+   S++  QN L+ MY     ++DA++VF  +  
Sbjct: 172 GSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPM 231

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI-KPDGTTFLVVLSACCHAGFIDKGLQ 184
           +DL+SW+S++ G +  G+  EA+   ++M    +  P+   F   L AC      D G Q
Sbjct: 232 KDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQ 291

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
              L     S     A    ++  +  R GFLN A    + + R P  + +  +++    
Sbjct: 292 IHGLCIK--SELAGNAIAGCSLCDMYARCGFLNSARRVFDQIER-PDTASWNVIIAGLAN 348

Query: 245 HG--NREIAVRSAKRVLDLWPNDPAIYVLLSNVSK 277
           +G  +  ++V S  R     P+  ++  LL   +K
Sbjct: 349 NGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTK 383



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC      + V+  +   +  SWN IIAG  N G  ++A+  FS+MR +G   D  ++
Sbjct: 315 YARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISL 374

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-D 124
            S++ A        +G Q+H+ I K G+ +++ V N L+ MY  C  +     +F    +
Sbjct: 375 RSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRN 434

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             D VSWN++L  C  H    E ++LF+ M  +E +PD  T   +L  C     +  G Q
Sbjct: 435 NADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQ 494

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
            + Y ++   +   P       ++ +  + G L +A    +SM
Sbjct: 495 VHCYSLKTGLA---PEQFIKNGLIDMYAKCGSLGQARRIFDSM 534



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 1/183 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-DID 61
           I  Y R +   D   V+  +  ++ ISW++IIAGF  LG   +AL    EM   G+   +
Sbjct: 210 IAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPN 269

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +   S + A   +     G Q+H L  K     N      L  MYA CG +N A +VF 
Sbjct: 270 EYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFD 329

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            ++  D  SWN ++ G A++GY+ EAV +F QM+ +   PD  +   +L A      + +
Sbjct: 330 QIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQ 389

Query: 182 GLQ 184
           G+Q
Sbjct: 390 GMQ 392



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 3/169 (1%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFS-EMRQAGIDIDYFTITSIVGAIGVI 75
           +V S+++T   +  N  I   C      +AL+ F    + +   I   T  S++ A    
Sbjct: 23  SVVSTIKTEELM--NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSS 80

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
               +G+++H  I       +  + N ++ MY  CG++ DA +VF  M ER+LVS+ S++
Sbjct: 81  RSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVI 140

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            G + +G   EA++L+ +M + ++ PD   F  ++ AC  +  +  G Q
Sbjct: 141 TGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQ 189


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 173/301 (57%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R     D + V  S+  RN ++WN +I G    G  E  L  +  M+ +G   +  T 
Sbjct: 136 YMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITF 195

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ +   ++   +G+Q+HA   KIG  S V V + L+ MY+ CG + DA K FS  ++
Sbjct: 196 VTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERED 255

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            D V W+S++     HG   EA++LF  M ++TE++ +   FL +L AC H+G  DKGL+
Sbjct: 256 EDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLE 315

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F +M      +P   +HYT +V LLGRAG L++AE+ I SM   P P ++K LLSAC +
Sbjct: 316 LFDMMVEKYGFKPG-LKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNI 374

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N E+A +  K +L++ PND A YVLL+NV  +   W D  ++R  M ++ ++K+ G S
Sbjct: 375 HKNAEMAQKVFKEILEIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGIS 434

Query: 305 W 305
           W
Sbjct: 435 W 435



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 87/179 (48%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R    +  + V+  +  R   +WNA+IAG       E+ L  F EM   G   D +T+
Sbjct: 35  YVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTL 94

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+      +     G+Q+H    K G + ++ V + L  MY   G + D   V  SM  
Sbjct: 95  GSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPV 154

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           R+LV+WN+L++G A +G     + L++ M+ +  +P+  TF+ VLS+C       +G Q
Sbjct: 155 RNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQ 213



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 84/173 (48%), Gaps = 7/173 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           I  YS+C    D    +S     +++ W+++I+ +   G G++A+K F+ M  Q  ++++
Sbjct: 234 ISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVN 293

Query: 62  YFTITSIVGAIGVISGFKEG--KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
                +++ A    SG K+   +    ++ K G+   +     +V +    G ++ A  +
Sbjct: 294 EVAFLNLLYACSH-SGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAI 352

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             SM  + D V W +LL  C  H  +  A ++F+++   EI P+ +   V+L+
Sbjct: 353 IKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEI--LEIDPNDSACYVLLA 403



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 52/136 (38%), Gaps = 12/136 (8%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           N    N L+  Y   G +  A KVF  M +R L +WN+++ G     Y+ E + LF +M 
Sbjct: 24  NFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMH 83

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYF-----YLMRNDASLEPPRAEHYTAIVGLL 210
                PD  T   V S       +  G Q       Y +  D  +    A  Y       
Sbjct: 84  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYM------ 137

Query: 211 GRAGFLNEAESFINSM 226
            R G L + E  I SM
Sbjct: 138 -RNGKLQDGEIVIRSM 152


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 168/301 (55%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D Q V+  + +RN ++W A+IAG+      E+ +  F EM ++ +  +  T+
Sbjct: 250 YGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTL 309

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++ A   +     G+++H  + K   + N  V   L+  YA CG + +A  VF  + E
Sbjct: 310 SSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLRE 369

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +++ +W +++ G A HGY+  AV LF  M  + + P+  TF+VVLSAC H G +++G + 
Sbjct: 370 KNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRL 429

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+   +LE P+A+HY  +V L GR G L EA++ I  M   P  +V+ AL  +C +H
Sbjct: 430 FLSMKERFNLE-PKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIH 488

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + E+   +A RV+ L P+    Y LL+N+   +  WDD   +R  M ++ + K PG SW
Sbjct: 489 KDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSW 548

Query: 306 V 306
           +
Sbjct: 549 I 549



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 130/272 (47%), Gaps = 8/272 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS C        V+     ++ +SW A+I GF    S  +A+  F EM+++G+  +  T+
Sbjct: 148 YSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTV 207

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            S++ A       + G+ +H    + G    +VF+ + LV MY  CG  +DA KVF  M 
Sbjct: 208 VSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMP 267

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            R++V+W +L+ G        + + +FE+M K+++ P+  T   VLSAC H G + +G +
Sbjct: 268 SRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRR 327

Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            + Y+++N   +        T ++    + G L EA      + R      + A+++   
Sbjct: 328 VHCYVIKNSIEINTTVG---TTLIDFYAKCGCLEEAILVFERL-REKNVYTWTAMINGFA 383

Query: 244 VHGNREIAVRSAKRVLD--LWPNDPAIYVLLS 273
            HG    AV     +L   + PN+    V+LS
Sbjct: 384 AHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLS 415



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 116/234 (49%), Gaps = 20/234 (8%)

Query: 8   RCDSSLDFQ---NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFS--EMRQAGIDIDY 62
           RC ++  F+    +   ++T +   W++++  F    +  + L   S  +MR+ G+    
Sbjct: 45  RCTAATQFRYARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRLSFLSYRQMRRNGVVPSR 104

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T   ++ A+  +       Q HA I K G+DS++FV+N L+  Y+ CG     ++VF  
Sbjct: 105 HTFPPLLKAVFKLRD-ANPFQFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDG 163

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            +++D+VSW +++ G   +  S EA+  F +M+++ +  +  T + VL A   A  +  G
Sbjct: 164 TEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFG 223

Query: 183 --LQYFYL----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM-SRN 229
             +  FYL    +R D  +        +++V + G+ G  ++A+   + M SRN
Sbjct: 224 RSIHGFYLEAGRVRCDVFIG-------SSLVDMYGKCGCYDDAQKVFDEMPSRN 270


>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
 gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 113/291 (38%), Positives = 165/291 (56%), Gaps = 9/291 (3%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  +N +SW  I++G+   G  + A++ F +M +AG+  D  T+ SI+ +      
Sbjct: 96  LFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGL 155

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              GK++H  I +I Y  +V V N LV MYA CG ++ A  VF+ M ++DLVSWN +L G
Sbjct: 156 LGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQG 215

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG+  +A+QLF  M++   +PD  T + VL AC HAGF+D+G++YF  M  D  +  
Sbjct: 216 LAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGI-V 274

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P  EHY  +V LLGR G L EA   + SM   P   ++  LL AC++H     AV  A+ 
Sbjct: 275 PHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMHN----AVGLAEE 330

Query: 258 VLD----LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           VLD    L P+DP  Y LLSN+  +   W    ++R  M N GI+K  G S
Sbjct: 331 VLDCLFKLEPSDPGNYSLLSNIFASAGDWSSVANVRLQMKNFGIQKPSGAS 381



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 116/242 (47%), Gaps = 23/242 (9%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ +SWN++I G   +G   +A K F EM           +   V    ++ G
Sbjct: 3   LFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEM----------PMKDAVSWNTILDG 52

Query: 78  FKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           + +  +M+    +F+   + NV   + +V  Y   G +  A  +F  M  ++LVSW  ++
Sbjct: 53  YVKAGEMNKAFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIV 112

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A  G +++A++ FEQM++  +KPD  T + +L++C  +G +  G       R   S+
Sbjct: 113 SGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLG------KRVHTSI 166

Query: 196 EPPR----AEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
           E  R         A+V +  + G ++ A S  N MS+    S +  +L    +HG+ E A
Sbjct: 167 ERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVS-WNCMLQGLAMHGHGEKA 225

Query: 252 VR 253
           ++
Sbjct: 226 LQ 227



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 4/166 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C       +V++ +  ++ +SWN ++ G    G GE+AL+ FS MRQ G   D  T+
Sbjct: 185 YAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTL 244

Query: 66  TSIVGAIGVISGF-KEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            +++ A  V +GF  EG +  + +    G   ++     +V +    G + +A ++  SM
Sbjct: 245 VAVLCAC-VHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSM 303

Query: 124 D-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
             E ++V W +LL  C  H     A ++ + + K E    G   L+
Sbjct: 304 PVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLL 349



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 17/165 (10%)

Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           ++F  MDERD+VSWNS++ G    G   EA +LF++M       D  ++  +L     AG
Sbjct: 2   RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMK----DAVSWNTILDGYVKAG 57

Query: 178 FIDKGLQYFYLM--RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVY 235
            ++K    F  M  RN  S        ++ +V    +AG +  A    + M      S +
Sbjct: 58  EMNKAFGLFESMPERNVVS--------WSTMVSGYCKAGDMEMARMLFDRMPVKNLVS-W 108

Query: 236 KALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
             ++S   V G  + A+RS +++ +  L P+D  +  +L++ +++
Sbjct: 109 TIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAES 153



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 25/225 (11%)

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +FK+  + +V   N ++      G +++A K+F  M  +D VSWN++L G    G   +A
Sbjct: 3   LFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKA 62

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDASLEPPRAEHYTA 205
             LFE M +  +     ++  ++S  C AG ++     F  M  +N  S        +T 
Sbjct: 63  FGLFESMPERNV----VSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVS--------WTI 110

Query: 206 IVGLLGRAGFLNEAESFINSMSR---NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLW 262
           IV      G   +A      M      P      ++L++C   G   +  R    +    
Sbjct: 111 IVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSI---- 166

Query: 263 PNDPAIYVLLSNVSKA-TDCWDDAGDI-RTLMYNRGIRKKPGYSW 305
             +   Y    NVS A  D +   G + R L    G+ KK   SW
Sbjct: 167 --ERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSW 209


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 185/302 (61%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C    D   V+  +  R+ ++W++++AG+      E+AL  F   +  G++ + FT
Sbjct: 192 VYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFT 251

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I+S + A    +   EGKQ+ A+  K G  SN+FV + L+ MYA CG I +A  VFSS++
Sbjct: 252 ISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVE 311

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E+++V WN++L G + H  S EA+  FE+MQ+  I P+  T++ VLSAC H G ++KG +
Sbjct: 312 EKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRK 371

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF LM    ++  P   HY+ +V +LGRAG L+EA+ FI+ M  +   S++ +LL++C++
Sbjct: 372 YFDLMIRVHNV-SPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRI 430

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           + N E+A  +AK + ++ P++   +VLLSN+  A D W++    R L+     +K+ G S
Sbjct: 431 YRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKS 490

Query: 305 WV 306
           W+
Sbjct: 491 WI 492



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 83/161 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + ++  +  R+ +SWN ++      G  E+AL  F +M++ G     FT+
Sbjct: 92  YSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTV 151

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S+V A        E KQ+H    K   DSNVFV   L+ +YA CG + DAN VF  M E
Sbjct: 152 SSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPE 211

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
           R  V+W+S++ G   +    EA+ LF + Q   ++ +  T 
Sbjct: 212 RSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTI 252



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 49/94 (52%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           EG   HA I ++G  ++    N L+ MY+ CG +  A K+F  M  R LVSWN+++    
Sbjct: 65  EGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHT 124

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            +G   +A+ LF QMQK        T   V+ AC
Sbjct: 125 QNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCAC 158


>gi|15228119|ref|NP_181269.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216847|sp|Q9ZUT4.1|PP192_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37320
 gi|4056486|gb|AAC98052.1| hypothetical protein [Arabidopsis thaliana]
 gi|37202040|gb|AAQ89635.1| At2g37320 [Arabidopsis thaliana]
 gi|51969760|dbj|BAD43572.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254289|gb|AEC09383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 103/291 (35%), Positives = 167/291 (57%), Gaps = 3/291 (1%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +  RN +SW A+I+GF      +  LK +S+MR++  D + +T T+++ A     
Sbjct: 176 KVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSG 235

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
              +G+ +H     +G  S + + N L+ MY  CG + DA ++F     +D+VSWNS++ 
Sbjct: 236 ALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIA 295

Query: 137 GCAHHGYSREAVQLFE-QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           G A HG + +A++LFE  M K+  KPD  T+L VLS+C HAG + +G ++F LM      
Sbjct: 296 GYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMAEHGL- 354

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
             P   HY+ +V LLGR G L EA   I +M   P   ++ +LL +C+VHG+    +R+A
Sbjct: 355 -KPELNHYSCLVDLLGRFGLLQEALELIENMPMKPNSVIWGSLLFSCRVHGDVWTGIRAA 413

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +  L L P+  A +V L+N+  +   W +A  +R LM ++G++  PG SW+
Sbjct: 414 EERLMLEPDCAATHVQLANLYASVGYWKEAATVRKLMKDKGLKTNPGCSWI 464



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 75/132 (56%)

Query: 51  SEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC 110
           S +++ G   D + ++S V + G+   F+ G   H L  K G+ S+V++ + LV +Y   
Sbjct: 109 SSVKRDGWSFDAYGLSSAVRSCGLNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDS 168

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G + +A KVF  M ER++VSW +++ G A        ++L+ +M+K+   P+  TF  +L
Sbjct: 169 GEVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALL 228

Query: 171 SACCHAGFIDKG 182
           SAC  +G + +G
Sbjct: 229 SACTGSGALGQG 240



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 4/162 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFS-EMRQAGIDID 61
           I  Y +C    D   ++     ++ +SWN++IAG+   G   QA++ F   M ++G   D
Sbjct: 263 ISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPD 322

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             T   ++ +       KEG++   L+ + G    +   + LV +    G + +A ++  
Sbjct: 323 AITYLGVLSSCRHAGLVKEGRKFFNLMAEHGLKPELNHYSCLVDLLGRFGLLQEALELIE 382

Query: 122 SMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
           +M  + + V W SLL  C  HG     ++  E  ++  ++PD
Sbjct: 383 NMPMKPNSVIWGSLLFSCRVHGDVWTGIRAAE--ERLMLEPD 422


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 185/302 (61%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C    D   V+  +  R+ ++W++++AG+      E+AL  F   +  G++ + FT
Sbjct: 165 VYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFT 224

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I+S + A    +   EGKQ+ A+  K G  SN+FV + L+ MYA CG I +A  VFSS++
Sbjct: 225 ISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVE 284

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E+++V WN++L G + H  S EA+  FE+MQ+  I P+  T++ VLSAC H G ++KG +
Sbjct: 285 EKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRK 344

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF LM    ++  P   HY+ +V +LGRAG L+EA+ FI+ M  +   S++ +LL++C++
Sbjct: 345 YFDLMIRVHNV-SPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRI 403

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           + N E+A  +AK + ++ P++   +VLLSN+  A D W++    R L+     +K+ G S
Sbjct: 404 YRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKS 463

Query: 305 WV 306
           W+
Sbjct: 464 WI 465



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 83/161 (51%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C      + ++  +  R+ +SWN ++      G  E+AL  F +M++ G     FT+
Sbjct: 65  YSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTV 124

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S+V A        E KQ+H    K   DSNVFV   L+ +YA CG + DAN VF  M E
Sbjct: 125 SSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPE 184

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
           R  V+W+S++ G   +    EA+ LF + Q   ++ +  T 
Sbjct: 185 RSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTI 225



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 49/94 (52%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           EG   HA I ++G  ++    N L+ MY+ CG +  A K+F  M  R LVSWN+++    
Sbjct: 38  EGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHT 97

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            +G   +A+ LF QMQK        T   V+ AC
Sbjct: 98  QNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCAC 131


>gi|40253530|dbj|BAD05478.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 724

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 167/304 (54%), Gaps = 2/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSRC        V+ ++ T+N +SW A+I+GF      E  L  F+ MR +    + 
Sbjct: 377 ITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISGFALHNRVEPCLHLFASMRLSSCKPND 436

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  ++       +    GK +HAL  ++G+ S V V N L+ MYA CG I++A  +F  
Sbjct: 437 ITFATLFSVCTNHALLALGKSVHALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQSIFGF 496

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  +DLVSWN+++ GC+ +G ++  + L ++M++  I PD  +FL VLS+C HA  +++G
Sbjct: 497 IACKDLVSWNAMIFGCSQYGLAKHCLDLLKEMERQHIVPDALSFLGVLSSCRHARLVEEG 556

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
              F  M        P  +HY+ +V LLGRAG L EA   I +MS  P   ++ +LL +C
Sbjct: 557 RHCFKTMIEHGI--KPGLDHYSCMVDLLGRAGLLEEAWDLIQTMSIPPNAVIWGSLLGSC 614

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           +VHGN  I +++A+  L L P   A ++ L+N+     CW D   +R  M  RG++   G
Sbjct: 615 RVHGNISIGIQAAEHRLKLEPGCAATHIQLANLYATIGCWSDVARVRMAMKARGLKTNIG 674

Query: 303 YSWV 306
            SW+
Sbjct: 675 CSWI 678



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 12/185 (6%)

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           F +G Q+H L+ K+G DS VF+ + L+ +Y+ C  +  +  VF +M  ++ VSW +++ G
Sbjct: 351 FTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISG 410

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL-MRNDASLE 196
            A H      + LF  M+ +  KP+  TF  + S C +   +  G     L MR      
Sbjct: 411 FALHNRVEPCLHLFASMRLSSCKPNDITFATLFSVCTNHALLALGKSVHALQMRMGFH-- 468

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
                   A++ +  + G ++EA+S    ++     S + A++  C  +G        AK
Sbjct: 469 -SYVHVSNALLSMYAKCGCIDEAQSIFGFIACKDLVS-WNAMIFGCSQYG-------LAK 519

Query: 257 RVLDL 261
             LDL
Sbjct: 520 HCLDL 524


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 1011

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/279 (37%), Positives = 172/279 (61%), Gaps = 1/279 (0%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +SW ++++G+   G  E  LK F  M +  + +D  T+T+I+ A       + G+ +HA 
Sbjct: 605 VSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAY 664

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           + KIG+  + +V + L+ MY+  G+++DA  VF   +E ++V W S++ G A HG    A
Sbjct: 665 VQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHA 724

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           + LFE+M    I P+  TFL VL+AC HAG I++G +YF +M+ DA    P  EH T++V
Sbjct: 725 IGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMK-DAYCINPGVEHCTSMV 783

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267
            L GRAG L + ++FI     +   SV+K+ LS+C++H N E+    ++ +L + P+DP 
Sbjct: 784 DLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPG 843

Query: 268 IYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            YVLLSN+  +   WD+A  +R+LM+ RG++K+PG SW+
Sbjct: 844 AYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWI 882



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 134/289 (46%), Gaps = 28/289 (9%)

Query: 10  DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIV 69
           + SLD   ++  +  ++ +SWN I+ G    G    AL+    M + G +    T +  +
Sbjct: 473 EKSLD---MFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIAL 529

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM------ 123
                +S  + G+Q+H ++ K G+DS+ F+++ LV MY  CG ++ A+ +   +      
Sbjct: 530 ILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLR 589

Query: 124 ----------DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
                      +  +VSW S++ G   +G   + ++ F  M +  +  D  T   ++SAC
Sbjct: 590 KGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISAC 649

Query: 174 CHAGFIDKGLQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSMSRNPG 231
            +AG ++ G      ++        R + Y  ++++ +  ++G L++A   +   S  P 
Sbjct: 650 ANAGILEFGRHVHAYVQKIGH----RIDAYVGSSLIDMYSKSGSLDDAW-MVFRQSNEPN 704

Query: 232 PSVYKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
             ++ +++S   +HG    A+   + +L+  + PN+     +L+  S A
Sbjct: 705 IVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHA 753



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 90/184 (48%), Gaps = 4/184 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++ ++    Q ++  +  RN  +W  +I+GF   GS E     F EM+  G   + +T+
Sbjct: 334 YAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTL 393

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++    + +  + GK +HA + + G D +V + N ++ +Y  C     A ++F  M+E
Sbjct: 394 SSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNE 453

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VSWN ++      G   +++ +F ++   ++     ++  ++      G+    L+ 
Sbjct: 454 GDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDV----VSWNTIVDGLLQCGYERHALEQ 509

Query: 186 FYLM 189
            Y M
Sbjct: 510 LYCM 513



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 9/113 (7%)

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +HAL  K G    +   N L+ +YA    +  A K+F  + +R+  +W  L+ G A  G 
Sbjct: 311 LHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGS 370

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-----YFYLMRN 191
           S     LF +MQ     P+  T   VL  C     +D  LQ     + +++RN
Sbjct: 371 SEMVFNLFREMQAKGACPNQYTLSSVLKCCS----LDNNLQLGKGVHAWMLRN 419



 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 6/172 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+  S  D   V+      N + W ++I+G+   G G  A+  F EM   GI  +  T 
Sbjct: 684 YSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTF 743

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQN--RLVFMYAICGAINDA-NKVFSS 122
             ++ A       +EG +   ++ K  Y  N  V++   +V +Y   G +    N +F +
Sbjct: 744 LGVLNACSHAGLIEEGCRYFRMM-KDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKN 802

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
                   W S L  C  H        + E +   ++ P      V+LS  C
Sbjct: 803 GISHLTSVWKSFLSSCRLHKNVEMGKWVSEML--LQVAPSDPGAYVLLSNMC 852


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/291 (36%), Positives = 166/291 (57%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  +N ++WNA+IAG+      E  +K F  M   GI  +  T++S +     +
Sbjct: 151 ERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSEL 210

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           S  + G+Q+H L+ K     +      L+ MY  CG + D  K+F  +  RD+V+WN+++
Sbjct: 211 SALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMI 270

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG  ++A+ LF++M +  +KPD  TF+ VL AC HAGF D G++YF+ M  D  L
Sbjct: 271 SGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGL 330

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
              + +HYT +V LLGRAG L EA   I  M   P  +V+  LL AC++H N E+A  ++
Sbjct: 331 V-AKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFAS 389

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +++L+L P     YV L+NV  AT  WD    +R  M +  + K PGYSW+
Sbjct: 390 QKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWI 440



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 42/237 (17%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++++  + T+N ++WNA+I+G+   G  + ALK F +              S+V    +I
Sbjct: 89  RDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKA----------PFKSVVAWTAMI 138

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +G                             Y   G I  A ++F  M E++LV+WN+++
Sbjct: 139 TG-----------------------------YMKLGRIGLAERLFEKMPEKNLVTWNAMI 169

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G   +  + + V+LF  M    I+P+ +T    L  C     +  G Q   L+      
Sbjct: 170 AGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLC 229

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
           +   A   T+++ +  + G L +       + R      + A++S    HG  + A+
Sbjct: 230 DDTTAG--TSLISMYCKCGVLEDGWKLFVQVPRR-DVVTWNAMISGYAQHGEGKKAL 283



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C    D   ++  V  R+ ++WNA+I+G+   G G++AL  F EM + G+  D+
Sbjct: 239 ISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDW 298

Query: 63  FTITSIVGA 71
            T  +++ A
Sbjct: 299 ITFVAVLMA 307


>gi|357135729|ref|XP_003569461.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Brachypodium distachyon]
          Length = 595

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 175/301 (58%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C + LD + ++  +  RN +SW+A+I G+ + G    AL  F    +  ++++ FT+
Sbjct: 168 YAKCGNLLDARRLFDEMPERNVVSWSALIGGYADAGMHPAALWIFRSALEEAVEVNDFTV 227

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + IV      + F  G Q+HA   K   D++ FV + LV +Y+ CG ++ A ++FS+  E
Sbjct: 228 SCIVRVCATATLFDLGAQVHARSIKTALDASPFVGSSLVSLYSKCGLVDRAYRIFSAAPE 287

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+L  WN++L   A HG++  A + F +MQ    +P+  TFL +L+AC HAG +D+G +Y
Sbjct: 288 RNLGIWNAVLNASAQHGHTATAFERFMEMQNDGFRPNYITFLCLLTACSHAGLVDEGKRY 347

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM+ + ++E P+AEHY A+V LLGR G + EA   I SM   P  SV+ ALL AC++ 
Sbjct: 348 FSLMK-EYTIE-PQAEHYAAMVDLLGRVGRITEALELIESMPMEPPESVWGALLMACRMF 405

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + + A  +AKR+          ++LLS+   A     DA   R  M + G+RK+ G SW
Sbjct: 406 KDADTAAIAAKRLFQTGSRSSGAHMLLSSTYAAAGRHVDAALARKAMRDAGVRKETGLSW 465

Query: 306 V 306
           +
Sbjct: 466 L 466



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 9/227 (3%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV----ISGFKEGKQMH 85
           W+++I+ F   G    A   F  M  AG+     +I S   A+      +        +H
Sbjct: 87  WSSLISSFAQNGLPAAAFDAFRRMLAAGVPATDRSIPSAAKAVAAAADSLRPPLAPHALH 146

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
            L  K  +  +VFV + ++ MYA CG + DA ++F  M ER++VSW++L+ G A  G   
Sbjct: 147 GLASKTPFAEDVFVGSAVLDMYAKCGNLLDARRLFDEMPERNVVSWSALIGGYADAGMHP 206

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205
            A+ +F    +  ++ +  T   ++  C  A   D G Q        A    P     ++
Sbjct: 207 AALWIFRSALEEAVEVNDFTVSCIVRVCATATLFDLGAQVHARSIKTALDASPFVG--SS 264

Query: 206 IVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
           +V L  + G ++ A   F  +  RN G  ++ A+L+A   HG+   A
Sbjct: 265 LVSLYSKCGLVDRAYRIFSAAPERNLG--IWNAVLNASAQHGHTATA 309


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 109/305 (35%), Positives = 178/305 (58%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDID 61
           I  Y + D +     V+  +  R+ ISWN+IIA +   G   ++++ F  M + G I+ +
Sbjct: 149 ITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYN 208

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
             T+++++ A       + GK +H  + K+G +SNVFV   ++ MY  CG +  A K F 
Sbjct: 209 AVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFD 268

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M E+++ SW++++ G   HG+++EA+++F +M    +KP+  TF+ VL+AC HAG +++
Sbjct: 269 RMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEE 328

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G  +F  M ++  +EP   EHY  +V LLGRAG+L EA   I  M   P   V+ ALL A
Sbjct: 329 GWHWFKAMSHEFDVEPG-VEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGA 387

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++H N ++   SA+++ +L P +   YVLLSN+      W+D   +R LM N G+ K P
Sbjct: 388 CRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPP 447

Query: 302 GYSWV 306
           G+S V
Sbjct: 448 GFSLV 452



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 32/188 (17%)

Query: 22  VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG 81
           V   N  SWN++IA     G   +AL+ FS MR+  +  +  T    + +   +     G
Sbjct: 36  VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 95

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN------------------------ 117
           +Q H      G++ ++FV + LV MY+ CG + DA                         
Sbjct: 96  RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 155

Query: 118 -------KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT-EIKPDGTTFLVV 169
                  +VF  M ERD++SWNS++   A +G S E++++F +M K  EI  +  T   V
Sbjct: 156 DDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAV 215

Query: 170 LSACCHAG 177
           L AC H+G
Sbjct: 216 LLACAHSG 223


>gi|413935435|gb|AFW69986.1| hypothetical protein ZEAMMB73_442164 [Zea mays]
          Length = 658

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 170/288 (59%), Gaps = 5/288 (1%)

Query: 19  YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
           + S+  +++ SWN +I+G+ +    E AL   SEM + G   D  T + ++     ++  
Sbjct: 339 FRSMLEKDETSWNTVISGYKD----EGALSLLSEMTRGGYRPDQATWSVVISVCASLAAL 394

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
             G+ +H    K G++ +  V + L+ MY+ CG I +A++VF  + +RD V+WN+++   
Sbjct: 395 GCGRMVHICTIKTGFEHDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATY 454

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP 198
           A+HG + EA+ LF++M K    PD  TFL VLSAC H G++ +G  YF  M+ D +L  P
Sbjct: 455 AYHGLAAEALALFDRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQDWNL-VP 513

Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258
           R++HY+ +V LLGR+GF+++A +F   +  N   + ++ L S+C  HG+ ++    AK V
Sbjct: 514 RSDHYSCMVDLLGRSGFVHQAYNFTRKIPSNLQINAWETLFSSCNAHGDIQLGELVAKNV 573

Query: 259 LDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           L   P+D  +Y LLSN+  A   W  A  +R LM  +G++K+ G SW+
Sbjct: 574 LQSRPSDGGMYTLLSNIYAAKGMWSSAATVRGLMKEQGLKKETGCSWI 621



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 21/171 (12%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + ++  ++  +++SWNA+I G+   G  + A + F EM   G D   +T         
Sbjct: 210 DAEELFGRMQRPDRVSWNAMITGYTRAGMMQVARRLFDEM--PGKDTVSWT--------A 259

Query: 74  VISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
           ++ G+ +   + A   +F+   D +V   N ++  + +   ++DA ++F+ M +RDLVSW
Sbjct: 260 IVRGYLQNGDVDAAWEVFQDMPDRDVLAWNTMMGGFVVSDRLDDALRLFADMPDRDLVSW 319

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           N++L G    G    A   F  M    ++ D T++  V+S     G+ D+G
Sbjct: 320 NTILQGYIQQGDMDSATTWFRSM----LEKDETSWNTVIS-----GYKDEG 361



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+R       + ++  +  ++ +SW AI+ G+   G  + A + F +M     D D 
Sbjct: 230 ITGYTRAGMMQVARRLFDEMPGKDTVSWTAIVRGYLQNGDVDAAWEVFQDM----PDRDV 285

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
               +++G   V     +  ++ A +     D ++   N ++  Y   G ++ A   F S
Sbjct: 286 LAWNTMMGGFVVSDRLDDALRLFADM----PDRDLVSWNTILQGYIQQGDMDSATTWFRS 341

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
           M E+D  SWN+++ G    G    A+ L  +M +   +PD  T+ VV+S C 
Sbjct: 342 MLEKDETSWNTVISGYKDEG----ALSLLSEMTRGGYRPDQATWSVVISVCA 389



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 44/256 (17%)

Query: 74  VISGFKEGKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           +++ F+ G+   A  +F    + NVF  N +V   A  G + DA  VF +M  R+ VSW 
Sbjct: 43  IMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLARNGLLADARGVFDAMPSRNSVSWA 102

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--R 190
           +LL G A  G   EA  LF++M    +     ++  ++S     G +D+  + F  M  R
Sbjct: 103 ALLTGYARRGRVAEARDLFDRMPHRNV----VSWNAMVSGYLRNGMVDRARELFDAMPAR 158

Query: 191 NDASL------------------------EPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
           +D S                          PP      A++      G+L +AE     M
Sbjct: 159 DDVSWLMMVSGYMRRKRFREAREIFDRAPSPPPTSVCNALLSGYAGYGYLKDAEELFGRM 218

Query: 227 SRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAI--------YVLLSNVSKA 278
            R P    + A+++     G  ++    A+R+ D  P    +        Y+   +V  A
Sbjct: 219 QR-PDRVSWNAMITGYTRAGMMQV----ARRLFDEMPGKDTVSWTAIVRGYLQNGDVDAA 273

Query: 279 TDCWDDAGDIRTLMYN 294
            + + D  D   L +N
Sbjct: 274 WEVFQDMPDRDVLAWN 289



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 17/187 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+R     + ++++  +  RN +SWNA+++G+   G  ++A + F  M  A  D+ +  +
Sbjct: 108 YARRGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRARELFDAM-PARDDVSWLMM 166

Query: 66  TSIVGAIGVISGF---KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
                    +SG+   K  ++   +  +        V N L+  YA  G + DA ++F  
Sbjct: 167 ---------VSGYMRRKRFREAREIFDRAPSPPPTSVCNALLSGYAGYGYLKDAEELFGR 217

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M   D VSWN+++ G    G  + A +LF++M       D  ++  ++      G +D  
Sbjct: 218 MQRPDRVSWNAMITGYTRAGMMQVARRLFDEMPGK----DTVSWTAIVRGYLQNGDVDAA 273

Query: 183 LQYFYLM 189
            + F  M
Sbjct: 274 WEVFQDM 280



 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 18/166 (10%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C    +   V+  +  R+ ++WNA+IA +   G   +AL  F  M +     D+
Sbjct: 420 ISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALALFDRMTKDRFSPDH 479

Query: 63  FTITSIVGAIGVISGFKEG-------KQMHALIFKIG-YDSNVFVQNRLVFMYAICGAIN 114
            T  S++ A        EG       +Q   L+ +   Y   V +  R  F++    A N
Sbjct: 480 ATFLSVLSACAHKGYLYEGCHYFRSMQQDWNLVPRSDHYSCMVDLLGRSGFVHQ---AYN 536

Query: 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160
              K+ S++    + +W +L   C  HG     +QL E + K  ++
Sbjct: 537 FTRKIPSNL---QINAWETLFSSCNAHG----DIQLGELVAKNVLQ 575


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 169/301 (56%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D +  ++     + + W A++ G    G  EQAL  ++ M + G+  +  TI
Sbjct: 366 YAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTI 425

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A   ++  + GKQ+H  I K G+     V + L  MY+ CG + D   VF  M  
Sbjct: 426 TSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGSALSTMYSKCGNLEDGMVVFRRMPH 485

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD+++WNS++ G + +G   +A+ LFE+M+     PD  TF+ VL AC H G +D+G  Y
Sbjct: 486 RDVIAWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACSHMGLVDRGWTY 545

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  L  PR +HY  +V +L RAG L+EA+ FI S++ + G  +++ +L AC+  
Sbjct: 546 FRSMIKDYGLT-PRLDHYACMVDILSRAGMLSEAKDFIESITIDHGTCLWRIVLGACRSL 604

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + ++   + ++++DL   D A Y+LLSN+  A   W+D   +R LM   G+ K PG SW
Sbjct: 605 RDFDVGAYAGEKLMDLGTGDSAAYILLSNIYAAQRKWNDVERVRYLMKLVGVSKDPGCSW 664

Query: 306 V 306
           V
Sbjct: 665 V 665



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 96/168 (57%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +V+ S + RN I+W+A+I G+   G+ E A++ FS+M  AG     FT+  ++ A   + 
Sbjct: 276 HVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVG 335

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
              EGKQ H L+ K+G++  V+V++ LV MYA CG I DA + F+   E D+V W +++ 
Sbjct: 336 TLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVT 395

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           G   +G   +A+ L+ +M K  + P+  T   +L AC     ++ G Q
Sbjct: 396 GHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQ 443



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 97/177 (54%), Gaps = 1/177 (0%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFTITSIVGAI 72
           D Q V+  +  RN++SW A++AG+      ++A + F +M  +  +  + F  T+++ AI
Sbjct: 171 DAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQMLGECPLHKNEFVATAVLSAI 230

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
            V  G   G Q+H L+ K G    V V+N LV MYA  G ++ A  VF S  ER+ ++W+
Sbjct: 231 SVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERNSITWS 290

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           +++ G + +G +  AV++F QM      P   T + VL+AC   G + +G Q   LM
Sbjct: 291 AMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLM 347



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 7/173 (4%)

Query: 84  MHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           +HAL  K+    SNVFV   L+ MY   G I DA  VF  M  R+ VSW +++ G A   
Sbjct: 139 VHALACKLPSASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARK 198

Query: 143 YSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAE 201
            S+EA +LF QM  +  +  +      VLSA      +  G+Q   L+  D  +     E
Sbjct: 199 CSQEAFELFRQMLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVE 258

Query: 202 HYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           +  ++V +  +AG ++ A   F +S  RN     + A+++    +GN E AVR
Sbjct: 259 N--SLVTMYAKAGCMDAAFHVFESSKERN--SITWSAMITGYSQNGNAESAVR 307


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 170/287 (59%), Gaps = 1/287 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ + WN +I G+   G   +AL  F  M +A    +  T+ S++ A G +  
Sbjct: 212 LFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGA 271

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G+ +H+ I   G   NV V   LV MY+ CG++ DA  VF  +D++D+V+WNS+++G
Sbjct: 272 LESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVG 331

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG+S+EA+QLF+ M +  + P   TF+ +LSAC H+G++ +G   F  M+++  +E 
Sbjct: 332 YAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIE- 390

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P+ EHY  +V LLGRAG + +A   + +M+  P P ++  LL AC++HG   +  +  + 
Sbjct: 391 PKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVEL 450

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           ++D    +   Y+LLSN+  A   WD    +RT+M + G++K+PG S
Sbjct: 451 LVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCS 497



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 136/300 (45%), Gaps = 47/300 (15%)

Query: 23  RTRNQ--ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE 80
           RT+N     W AII G    G  EQAL  +++M   G++ + FT +SI+     +   + 
Sbjct: 87  RTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILK----LCPIEP 142

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS---------- 130
           GK +H+   K+G+DS+++V+  L+ +YA  G +  A ++F +M E+ LVS          
Sbjct: 143 GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAK 202

Query: 131 ---------------------WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV 169
                                WN ++ G   +G   EA+ LF +M K + KP+  T L V
Sbjct: 203 HGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSV 262

Query: 170 LSACCHAGFIDKG-LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
           LSAC   G ++ G   + Y+  N            TA+V +  + G L +A    + +  
Sbjct: 263 LSACGQLGALESGRWVHSYIENNGIQFNVHVG---TALVDMYSKCGSLEDARLVFDKID- 318

Query: 229 NPGPSVYKALLSACQVHGNREIAVRSAKRV--LDLWPNDPAIYVLLSNVSKA---TDCWD 283
           +     + +++    +HG  + A++  K +  + L P +     +LS    +   T+ WD
Sbjct: 319 DKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWD 378



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 2/165 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S  D + V+  +  ++ ++WN++I G+   G  ++AL+ F  M + G+     T 
Sbjct: 301 YSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITF 360

Query: 66  TSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             I+ A G      EG  + + +  + G +  +     +V +    G +  A ++  +M+
Sbjct: 361 IGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMN 420

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
            E D V W +LL  C  HG      ++ E +    +   GT  L+
Sbjct: 421 IEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILL 465



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 35/183 (19%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           Q+HA++F+ G D +  +  +L   YA  G ++ +  +F       +  W +++ G A  G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEH 202
              +A+  + QM    ++P+  TF  +L  C                     +EP +A H
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLC--------------------PIEPGKALH 147

Query: 203 YTAI-----------VGLL---GRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
             A+            GLL    R G +  A+   ++M      S+  A+L+    HG  
Sbjct: 148 SQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSL-TAMLTCYAKHGEL 206

Query: 249 EIA 251
           + A
Sbjct: 207 DAA 209


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 174/303 (57%), Gaps = 12/303 (3%)

Query: 15  FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-------QAGID----IDYF 63
           F  ++  +  RN  SWN +I G+   G  ++AL+CF  M        + G D     + +
Sbjct: 269 FVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDY 328

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T+ +++ A   +   + GK +H     IGY  N+FV N L+ MYA CG I  A  VF  +
Sbjct: 329 TVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGL 388

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           D +D+++WN+++ G A HG+  +A+ LFE+M++   +PDG TF+ +LSAC H G +  GL
Sbjct: 389 DVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGL 448

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
            +F  M +D S+  P+ EHY  +V LLGRAG +++A   +  M   P   ++ ALL AC+
Sbjct: 449 LHFQSMVDDYSI-VPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGACR 507

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
           ++ N E+A  + +R+++L PN+P  +V++SN+ K      D   ++  M + G RK PG 
Sbjct: 508 MYKNVEMAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGC 567

Query: 304 SWV 306
           S +
Sbjct: 568 SVI 570



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 124/286 (43%), Gaps = 38/286 (13%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+      N  +WNA+  G+         +  F+ M +AG   + FT   +V +    
Sbjct: 74  RRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATA 133

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA--INDANKVFSSMDERDLVSWNS 133
           +  KEG+++H ++ K G+ SN FV   L+ MY++ G   + DA KVF+ M ++++ +W +
Sbjct: 134 NAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTA 193

Query: 134 LLLGCAHHGYSREAV---QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
           ++   A H   R+ V   +LF+   + ++      + VV+S     G +    + F  M 
Sbjct: 194 IV---AAHVACRDMVSARRLFDLAPQRDV----VLWNVVVSGYIELGDMVAARELFDRM- 245

Query: 191 NDASLEPPR-AEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVY--KALLSACQVHGN 247
                 P R    +  ++      G   E ESF+      P  +VY    L+     +G 
Sbjct: 246 ------PDRDVMSWNTVLSGYATNG---EVESFVKLFEEMPVRNVYSWNGLIGGYVRNGL 296

Query: 248 REIAVRSAKRVLDL-------------WPNDPAIYVLLSNVSKATD 280
            + A+   KR+L L              PND  +  +L+  S+  D
Sbjct: 297 FKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGD 342



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 23/182 (12%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   V++ +R +N  +W AI+A          A + F    Q   D+  + +        
Sbjct: 175 DAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQR--DVVLWNV-------- 224

Query: 74  VISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
           V+SG+ E   M A   +F    D +V   N ++  YA  G +    K+F  M  R++ SW
Sbjct: 225 VVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSW 284

Query: 132 NSLLLGCAHHGYSREAVQLFEQM-----------QKTEIKPDGTTFLVVLSACCHAGFID 180
           N L+ G   +G  +EA++ F++M               + P+  T + VL+AC   G ++
Sbjct: 285 NGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLE 344

Query: 181 KG 182
            G
Sbjct: 345 MG 346



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 45/100 (45%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
           Q+ A I   G + N +V    +   A  G I  A +VF    + +  +WN++  G A   
Sbjct: 40  QIQAQIVTHGLEGNDYVTPSFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQAN 99

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              + V LF +M +    P+  TF +V+ +C  A    +G
Sbjct: 100 CHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEG 139



 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C       +V+  +  ++ I+WN II G    G    AL  F  M++AG   D  T 
Sbjct: 372 YAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTF 431

Query: 66  TSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             I+ A   +   + G     +++        +     +V +    G I+ A  +   M 
Sbjct: 432 VGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMP 491

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            E D V W +LL  C  +     A    +++   E++P+     V++S
Sbjct: 492 MEPDAVIWAALLGACRMYKNVEMAELALQRL--IELEPNNPGNFVMVS 537


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 170/287 (59%), Gaps = 1/287 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  R+ + WN +I G+   G   +AL  F  M +A    +  T+ S++ A G +  
Sbjct: 146 LFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGA 205

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            + G+ +H+ I   G   NV V   LV MY+ CG++ DA  VF  +D++D+V+WNS+++G
Sbjct: 206 LESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVG 265

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG+S+EA+QLF+ M +  + P   TF+ +LSAC H+G++ +G   F  M+++  +E 
Sbjct: 266 YAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIE- 324

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P+ EHY  +V LLGRAG + +A   + +M+  P P ++  LL AC++HG   +  +  + 
Sbjct: 325 PKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVEL 384

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           ++D    +   Y+LLSN+  A   WD    +RT+M + G++K+PG S
Sbjct: 385 LVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCS 431



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 10/183 (5%)

Query: 107 YAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
           YA  G ++ A  +F  M+ERD V WN ++ G   +G   EA+ LF +M K + KP+  T 
Sbjct: 134 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 193

Query: 167 LVVLSACCHAGFIDKG-LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINS 225
           L VLSAC   G ++ G   + Y+  N            TA+V +  + G L +A    + 
Sbjct: 194 LSVLSACGQLGALESGRWVHSYIENNGIQFNVHVG---TALVDMYSKCGSLEDARLVFDK 250

Query: 226 MSRNPGPSVYKALLSACQVHGNREIAVRSAKRV--LDLWPNDPAIYVLLSNVSKA---TD 280
           +  +     + +++    +HG  + A++  K +  + L P +     +LS    +   T+
Sbjct: 251 ID-DKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTE 309

Query: 281 CWD 283
            WD
Sbjct: 310 GWD 312



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 2/165 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S  D + V+  +  ++ ++WN++I G+   G  ++AL+ F  M + G+     T 
Sbjct: 235 YSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITF 294

Query: 66  TSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             I+ A G      EG  + + +  + G +  +     +V +    G +  A ++  +M+
Sbjct: 295 IGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMN 354

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
            E D V W +LL  C  HG      ++ E +    +   GT  L+
Sbjct: 355 IEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILL 399


>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
          Length = 514

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 4/290 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ ++WN++I G+   G  E+AL+ F  M  + ++ D FT  S++ A   +
Sbjct: 99  KKVFCKMPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTFASVITACARL 158

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                 + +H L+ +   + N  + + L+ MY+ CG I  A +VF S++  D+  WNSL+
Sbjct: 159 GALNHAQWLHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLI 218

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG + +A+ +F +M+   + PD  TFL +L AC H G + +G +YF LM N  S+
Sbjct: 219 NGLAVHGLALDAMMVFSKMEAENVLPDSLTFLGILKACSHCGLVKEGRKYFDLMENYYSI 278

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           + P+ EHY A+V LLGRAG L+EA + I +M   P   V++ LLSAC+ H N E+   + 
Sbjct: 279 K-PQLEHYGAMVDLLGRAGLLDEAYAMITAMPMEPDVIVWRILLSACRTHRNTELGEVAV 337

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
             +      D   YVLLSN+  + + WD+A ++R +M   G+RK+ G SW
Sbjct: 338 ANISGPKSGD---YVLLSNIYCSQNRWDNAQEVREMMKEEGVRKRRGKSW 384



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 36/219 (16%)

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN------ 114
           D+     ++ A  +    +   + H  I + GY +N  +   L+  Y  C  +N      
Sbjct: 10  DHQLFCDLLEACKLSQDIRTATETHTRIIRFGYGTNSSIAASLISTYVNCNQLNLAYQVI 69

Query: 115 ---------------------------DANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
                                       A KVF  M +RD+V+WNS++ G   +G   EA
Sbjct: 70  RQVFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKFEEA 129

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           ++ F+ M  + ++PD  TF  V++AC   G ++   Q+ + +     +E       +A++
Sbjct: 130 LRSFQAMLSSNVEPDKFTFASVITACARLGALNHA-QWLHDLMVQKRIEVNFILS-SALI 187

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
            +  + G +  A+    S+ RN   SV+ +L++   VHG
Sbjct: 188 DMYSKCGRIETAKEVFESVERND-VSVWNSLINGLAVHG 225



 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 4/139 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQIS-WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           YS+C      + V+ SV  RN +S WN++I G    G    A+  FS+M    +  D  T
Sbjct: 190 YSKCGRIETAKEVFESVE-RNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPDSLT 248

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
              I+ A       KEG++   L+         +     +V +    G +++A  + ++M
Sbjct: 249 FLGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDEAYAMITAM 308

Query: 124 D-ERDLVSWNSLLLGCAHH 141
             E D++ W  LL  C  H
Sbjct: 309 PMEPDVIVWRILLSACRTH 327


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 175/294 (59%), Gaps = 4/294 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIVGAIGV 74
           + ++  ++ +N I+W A++ G+   G  E+AL+ F +M     +  +  T  +++GA   
Sbjct: 239 EKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSD 298

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS--MDERDLVSWN 132
           ++G  EG+Q+H +I K  +  +  V + L+ MY+ CG ++ A K+F    + +RDL+SWN
Sbjct: 299 LAGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWN 358

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
            ++   AHHGY +EA+ LF +MQ+  +  +  TF+ +L+AC H G +++G +YF  +  +
Sbjct: 359 GMIAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKN 418

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
            S++  R +HY  +V L GRAG L EA + I  +      +V+ ALL+ C VHGN +I  
Sbjct: 419 RSIQL-REDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIGK 477

Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             A+++L + P +   Y LLSN+  +   W +A ++R  M + G++K+PG SW+
Sbjct: 478 LVAEKILKIEPQNAGTYSLLSNMYASVGKWKEAANVRMRMKDMGLKKQPGCSWI 531



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 30/259 (11%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF-KEGKQ 83
           +N ++W A++ G+      ++A + F EM           + ++V    ++ G+ + G  
Sbjct: 62  KNVVTWTAMVNGYIKFNQVKEAERLFYEM----------PLRNVVSWNTMVDGYARNGLT 111

Query: 84  MHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
             AL +F+   + NV   N ++     CG I DA ++F  M +RD+VSW +++ G A +G
Sbjct: 112 QQALDLFRRMPERNVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNG 171

Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR--A 200
              +A  LF+QM    +     ++  +++       +D+ LQ F  M       P R   
Sbjct: 172 RVEDARALFDQMPVRNV----VSWNAMITGYAQNRRLDEALQLFQRM-------PERDMP 220

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL- 259
              T I G + + G LN AE     M +      + A+++    HG  E A+R   ++L 
Sbjct: 221 SWNTMITGFI-QNGELNRAEKLFGEM-QEKNVITWTAMMTGYVQHGLSEEALRVFIKMLA 278

Query: 260 --DLWPNDPAIYVLLSNVS 276
             +L PN      +L   S
Sbjct: 279 TNELKPNTGTFVTVLGACS 297



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 105/239 (43%), Gaps = 55/239 (23%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI------- 58
           Y + +   + + ++  +  RN +SWN ++ G+   G  +QAL  F  M +  +       
Sbjct: 74  YIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPERNVVSWNTII 133

Query: 59  --------------------DIDYFTITSIVGAI-------------------------G 73
                               D D  + T++V  +                          
Sbjct: 134 TALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNA 193

Query: 74  VISGFKEGKQM-HAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
           +I+G+ + +++  AL +F+   + ++   N ++  +   G +N A K+F  M E+++++W
Sbjct: 194 MITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITW 253

Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKT-EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
            +++ G   HG S EA+++F +M  T E+KP+  TF+ VL AC     + +G Q   ++
Sbjct: 254 TAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMI 312



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 104 VFMYAIC--GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161
           +F+  +C  G I+ A KVF  M ERD+  W +++ G    G  REA +LF+   + + K 
Sbjct: 6   LFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFD---RWDAKK 62

Query: 162 DGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           +  T+  +++       + +  + FY M
Sbjct: 63  NVVTWTAMVNGYIKFNQVKEAERLFYEM 90


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 105/291 (36%), Positives = 165/291 (56%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++++     +  ++WNA+I+G+   GS E A+  F EM +     +  TIT+I+ A   +
Sbjct: 365 RHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQL 424

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                GK +H LI     + N++V   LV MYA CG I++A ++F SM E++ V+WN+++
Sbjct: 425 GSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMI 484

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G   HGY  EA++L+ +M      P   TFL VL AC HAG + +G + F+ M N   +
Sbjct: 485 FGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRI 544

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           E P  EHY  +V +LGR+G L +A  FI  M   PGP+V+  LL AC +H + +IA  ++
Sbjct: 545 E-PLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLAS 603

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +R+ +L P     YVLLSN+      +  A  IR ++  R + K PG + +
Sbjct: 604 ERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLI 654



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 130/272 (47%), Gaps = 9/272 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YS+C      + ++  +   + I++NA+I+GF   G  E ++K F E+  +G   + 
Sbjct: 251 ISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSG---ER 307

Query: 63  FTITSIVGAIGVISGFKE---GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            + ++IVG I + S F        +H    K G   N  V      +Y     I+ A  +
Sbjct: 308 VSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHL 367

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F    E+ +V+WN+++ G   +G +  A+ LF++M KTE  P+  T   +LSAC   G +
Sbjct: 368 FDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSL 427

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
             G    +L++++ +LE P     TA+V +  + G ++EA    +SMS       +  ++
Sbjct: 428 SFGKWVHHLIKSE-NLE-PNIYVSTALVDMYAKCGNISEAWQLFDSMSEK-NTVTWNTMI 484

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVL 271
               +HG    A++    +L L  N  A+  L
Sbjct: 485 FGYGLHGYGHEALKLYNEMLHLGYNPSAVTFL 516



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 126/263 (47%), Gaps = 11/263 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ + WN +I G       + +++ F EM   G+ +D  T+T+++ A   +
Sbjct: 163 RKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAEL 222

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              K G  +  L  KIG+    +V   L+ +Y+ CG +N A  +F  ++  DL+++N+++
Sbjct: 223 QELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMI 282

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G   +G +  +V+LF ++  +  +   +T + ++      G +      + + +++   
Sbjct: 283 SGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGII 342

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALLSACQVHGNREIAV 252
           L P  +  +TAI         LNE +   +    +P  +V  + A++S    +G+ E A+
Sbjct: 343 LNPTVSTAFTAIYNK------LNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAI 396

Query: 253 RSAKRVL--DLWPNDPAIYVLLS 273
              K ++  +  PN   I  +LS
Sbjct: 397 SLFKEMMKTEFTPNAVTITTILS 419



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 19/249 (7%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDIDYFTITSIVGAIGVIS 76
           ++ SV   +   +N ++ GF    S   ++  ++ +R+   +  D FT    V A    S
Sbjct: 66  LFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAAC---S 122

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             K    +HA     GY SNVFV + LV +Y     +  A KVF  M ERD V WN+++ 
Sbjct: 123 NDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMIN 182

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN----- 191
           G   +    +++QLF +M    ++ D +T   VL A      +  G+    L        
Sbjct: 183 GLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGF 242

Query: 192 -DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREI 250
            D  L        T ++ L  + G +N A      ++R P    Y A++S    +G  E 
Sbjct: 243 CDYVL--------TGLISLYSKCGDVNTARLLFRRINR-PDLIAYNAMISGFTANGGTEC 293

Query: 251 AVRSAKRVL 259
           +V+  + +L
Sbjct: 294 SVKLFRELL 302



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 4/168 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +  +   ++ S+  +N ++WN +I G+   G G +ALK ++EM   G +    T 
Sbjct: 456 YAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTF 515

Query: 66  TSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            S++ A        EG+++ H ++ K   +  +     +V +    G +  A +    M 
Sbjct: 516 LSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMP 575

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            E     W +LL  C  H  +  A    E++   E+ P    + V+LS
Sbjct: 576 VEPGPAVWGTLLGACMIHKDTDIARLASERL--FELDPGSVGYYVLLS 621


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 182/302 (60%), Gaps = 1/302 (0%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C+   D   V+  +  R  ++W+++ AG+   G  E+AL  F   ++ G+++  FT
Sbjct: 202 VYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFT 261

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +++I+ A   ++   EG Q+HA+I K G+  N FV   LV +YA CG I  A  +F+ M+
Sbjct: 262 LSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYME 321

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +++V WN+++   + H +S EA+ LFE+MQ+  I P+  T+L VLS C HAG ++KG  
Sbjct: 322 HKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRH 381

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF L+ +D ++E P   HY+ +V +LGR+G  +EA   +N M   P  S++ +LL +C+ 
Sbjct: 382 YFSLLMSDRTVE-PNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLGSCRN 440

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           + N  +A  +A+++  L P++   +VLLSNV  A+  W++    R  + + G +K+ G S
Sbjct: 441 YNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENVLMARKYLKDSGAKKEMGRS 500

Query: 305 WV 306
           W+
Sbjct: 501 WI 502



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 95/179 (53%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C  +   + V+  +  R+ +SWN +IAG+ + G   QALK FS M + G  +  FT+
Sbjct: 102 YTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTL 161

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S + A        E KQ+H +  K+  DSN FV   ++ +YA C  I DA  VF  M E
Sbjct: 162 SSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPE 221

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           R LV+W+SL  G   +G   EA+ LF   Q+  ++    T   +LSAC       +G+Q
Sbjct: 222 RTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQ 280



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 6/140 (4%)

Query: 37  FCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE---GKQMHALIFKIGY 93
           FCN  +   +LK   + R A ID +   +++I   + + +  K    GK  H L    G 
Sbjct: 32  FCNKLNHSSSLK---DRRLARIDRNLIDVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGL 88

Query: 94  DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
            ++    N L+ +Y  CG  + A  VF  M  R +VSWN+++ G  H G   +A++LF +
Sbjct: 89  VTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSR 148

Query: 154 MQKTEIKPDGTTFLVVLSAC 173
           M +        T    + AC
Sbjct: 149 MHREGTHMSEFTLSSTICAC 168


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 108/291 (37%), Positives = 163/291 (56%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +N++  + TR+ +SW  +I G       +Q+L+ FS MR  GI  D   +TS++ A   +
Sbjct: 257 KNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASL 316

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G  +H  I + G   ++ +   +V MYA CG I  A K+F SM +R+  +WN+LL
Sbjct: 317 GTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALL 376

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A HG   EA+ LFE M  + +KP+  TFL +L+ACCH G +D+G +YF  M    +L
Sbjct: 377 CGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNL 436

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
             P+ EHY  ++ L  RAG L EA     +M   P   ++  LL+AC   GN E++ R  
Sbjct: 437 -LPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGNIELSHRIQ 495

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
             +L+L  +D  ++VLLSN+S     W +   +R LM +RG+RK PG S +
Sbjct: 496 DYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRGVRKAPGSSVI 546



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 3/148 (2%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           +N++I G+      + A+  +  M + G   D FT   ++ A    SG +EG+Q+H ++ 
Sbjct: 73  FNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVV 132

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
           K+G  ++ +VQN L+  Y  CG  + A KVF  M  RD+VSWNSL+ G    G+  EA+ 
Sbjct: 133 KLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAIS 192

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           +F +M   +++P  TT + VL+AC   G
Sbjct: 193 VFFRM---DVEPSMTTLVSVLAACARNG 217



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 9/230 (3%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +  R+ +SWN++I+GF   G  ++A+  F  M    ++    T+ S++ A      
Sbjct: 162 VFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRM---DVEPSMTTLVSVLAACARNGD 218

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              GK +H +I +  +  N+ + N ++ MY   G   +A  +F  +  RD+VSW  ++ G
Sbjct: 219 LCTGKGIHGVIER-RFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITG 277

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL-QYFYLMRNDASLE 196
                + +++++LF  M+   I PD      VLSAC   G +D G   + Y+ +     +
Sbjct: 278 LVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWD 337

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
                  TAIV +  + G +  A     SMS+      + ALL    +HG
Sbjct: 338 IHIG---TAIVDMYAKCGCIEMALKIFYSMSQR-NTFTWNALLCGLAMHG 383



 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 78/176 (44%), Gaps = 20/176 (11%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        ++ S+  RN  +WNA++ G    G   +AL  F  M  +G+  +  T 
Sbjct: 348 YAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITF 407

Query: 66  TSIVGAIGVISGFKEGK-------QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
            +I+ A        EG+       +++ L+ K+ +         ++ ++   G + +A +
Sbjct: 408 LAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEH------YGCMIDLFCRAGLLEEAVE 461

Query: 119 VFSSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLS 171
           +  +M  + D++ W  LL  C   G     ++L  ++Q    E+  D +   V+LS
Sbjct: 462 LARTMPMKPDVLIWGLLLNACTTVG----NIELSHRIQDYILELDHDDSGVFVLLS 513


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 120/307 (39%), Positives = 172/307 (56%), Gaps = 21/307 (6%)

Query: 6   YSRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG--IDID 61
           Y++C S    + ++  +  + R+ ++W  +I G+   G    AL+ FSEM +    I  +
Sbjct: 227 YAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPN 286

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIG-YDSNV-FVQNRLVFMYAICGAINDANKV 119
            FTI+ ++ A   ++  K GKQ+HA + +    DS+V FV N L+ MY+  G ++ A  V
Sbjct: 287 DFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVV 346

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F SM +R+ VSW SLL G   HG +              +  DG TFLVVL AC H+G +
Sbjct: 347 FDSMSKRNAVSWTSLLTGYGMHGAA--------------LVLDGITFLVVLYACSHSGMV 392

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
           D+G+  FY M  D  ++P   EHY  +  L GRAG L EA   IN MS  P P V+ ALL
Sbjct: 393 DRGIDLFYRMSKDFVVDPG-VEHYACMADLFGRAGRLCEATRLINDMSMEPTPVVWIALL 451

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           SAC+ H N E+A  +AK++L+L  ++   Y LLSN+      W D   IR LM   GI+K
Sbjct: 452 SACRTHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIRYLMKRTGIKK 511

Query: 300 KPGYSWV 306
           +PG+SWV
Sbjct: 512 RPGWSWV 518



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 126/287 (43%), Gaps = 47/287 (16%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   V+  +R ++ ++WNA++ G+   G  E AL  F +MR+  I++D  T 
Sbjct: 84  YAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIELDVVTW 143

Query: 66  TSIV-----------------------------------GAIGVISGFKEGKQMHA---- 86
           +S++                                    A   +     GK+ H     
Sbjct: 144 SSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVK 203

Query: 87  LIFKIGYD---SNVFVQNRLVFMYAICGAINDANKVFSSM--DERDLVSWNSLLLGCAHH 141
            I K  ++    ++ V N L+ MYA C ++  A  +F  +   +RD+V+W  ++ G A H
Sbjct: 204 FILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQH 263

Query: 142 GYSREAVQLFEQMQKTE--IKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPR 199
           G +  A+QLF +M K +  I P+  T   VL AC     +  G Q    +   + ++   
Sbjct: 264 GDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDV 323

Query: 200 AEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
                 ++ +  ++G ++ A+   +SMS+    S + +LL+   +HG
Sbjct: 324 LFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVS-WTSLLTGYGMHG 369



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 23/164 (14%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV--ISGFKEGKQMH 85
           +SWN+I++ + +      A+  F EM      + Y  +   VG + +  +SGF       
Sbjct: 24  VSWNSIVSVYSHCFVPNDAVFLFREMT-----VGYGILPDTVGVVNILPVSGF------- 71

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
                +G+    FV N LV MYA CG + DA+KVF  M  +D+V+WN+++ G + +G   
Sbjct: 72  -----LGF----FVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFE 122

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           +A+ LF +M++ +I+ D  T+  V+S     GF  + +  F  M
Sbjct: 123 DALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQM 166


>gi|326507562|dbj|BAK03174.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 173/301 (57%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +  D + V+  +  RN +SW+A+I G+ + G    AL  F    +  + ++ FT+
Sbjct: 171 YAKCGNLSDARRVFDEMPERNVVSWSALIGGYADAGMHPSALCIFRSALEEAVQVNDFTV 230

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           + IV      + F+ G Q+HA   K   D++ FV + LV +Y+ CG ++ A +VFS+  E
Sbjct: 231 SCIVRVCAAATLFELGAQVHARSIKTALDASPFVGSSLVSLYSKCGLVDCAYRVFSAAPE 290

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+L  WN++L+  A HG++  A + F +MQ    +P+  TFL +L+AC HAG +D+G +Y
Sbjct: 291 RNLGIWNAVLIASAQHGHTSTAFERFTKMQHAGFRPNFITFLCLLTACSHAGLVDEGKRY 350

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F LM+ +  +E P  EHY A+V LLGR G + EA   I SM   P  SV+ ALL AC++ 
Sbjct: 351 FSLMK-EYRIE-PEVEHYAAMVDLLGRVGRITEALDLIESMPMEPPDSVWGALLMACRMF 408

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            + + A  +AKR+ +        ++LLS+   A     DA   R  M + GIRK+ G SW
Sbjct: 409 KDADTAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHVDAALARKAMRDAGIRKETGLSW 468

Query: 306 V 306
           +
Sbjct: 469 L 469



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 113/257 (43%), Gaps = 11/257 (4%)

Query: 2   QILT-YSRCD-SSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID 59
            +LT Y+RC    L  +       + +  +W+++I+ F   G    A   F  M  AG+ 
Sbjct: 60  HLLTFYARCSLPELSLRAFLDLPASPSPAAWSSLISSFAQNGLPAAAFDAFRRMLAAGVP 119

Query: 60  IDYFTITSIVGAIGVISGFKEGK----QMHALIFKIGYDSNVFVQNRLVFMYAICGAIND 115
               +I     A+   +           +H L  K  +  +VFV + ++ MYA CG ++D
Sbjct: 120 ATDRSIPPAAKAVAAAADSSRPPLAPHALHGLASKTPFAGDVFVGSAVLDMYAKCGNLSD 179

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
           A +VF  M ER++VSW++L+ G A  G    A+ +F    +  ++ +  T   ++  C  
Sbjct: 180 ARRVFDEMPERNVVSWSALIGGYADAGMHPSALCIFRSALEEAVQVNDFTVSCIVRVCAA 239

Query: 176 AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSV 234
           A   + G Q        A    P     +++V L  + G ++ A   F  +  RN G  +
Sbjct: 240 ATLFELGAQVHARSIKTALDASPFVG--SSLVSLYSKCGLVDCAYRVFSAAPERNLG--I 295

Query: 235 YKALLSACQVHGNREIA 251
           + A+L A   HG+   A
Sbjct: 296 WNAVLIASAQHGHTSTA 312


>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
 gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
          Length = 439

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 112/288 (38%), Positives = 163/288 (56%), Gaps = 1/288 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +  R  ISW  +I GF  +G  E+AL+ F +M+ + ++ D  TI +++ A   + 
Sbjct: 100 EVFDEMPERGVISWTVLINGFVKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLG 159

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G  +H    K G   NV + N L+ +Y+ CGAI  A +VF  M ER LVSWNS++ 
Sbjct: 160 ALGLGLWVHRYALKKGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIG 219

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A +G++ EA++ F+ MQK   KP+  +F   L+AC H G +D+GL+YF +M     + 
Sbjct: 220 GLAANGFTEEALEHFDLMQKQGFKPNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKIS 279

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
            PR EHY  IV L  RAG L +A S + +M   P   V  +LL+AC+  G+ E+A R   
Sbjct: 280 -PRIEHYGCIVDLYSRAGRLEDAMSVVQNMPMKPNEVVVGSLLAACRTRGDVELAERLMN 338

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
            ++ L P   + YVLLSN+  A   WD A   R  M   GI+KKPG+S
Sbjct: 339 YLVHLDPGADSNYVLLSNIYAAVGRWDGACKQRMTMKALGIQKKPGFS 386



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 34/165 (20%)

Query: 53  MRQAGIDIDYFT-ITSIVGAIGVIS-GFKEGKQMHALIFKIGYDS-NVFVQNRLVFMYAI 109
           MR   ID ++ T IT + G   + S G   G  +HA   K+G D+ N+ V   LV MYA 
Sbjct: 1   MRLLEIDPNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAK 60

Query: 110 CG-------------------------------AINDANKVFSSMDERDLVSWNSLLLGC 138
           CG                                I +A +VF  M ER ++SW  L+ G 
Sbjct: 61  CGHVELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGF 120

Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
              G   EA++ F +MQ ++++PD  T + VLSAC + G +  GL
Sbjct: 121 VKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGL 165



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 8/170 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YSRC +    + V+  +  R  +SWN+II G    G  E+AL+ F  M++ G   +  + 
Sbjct: 190 YSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPNDVSF 249

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDS-NVFVQNRLVFMYAICGAINDANKVFSSMD 124
           T  + A        EG +   ++ ++   S  +     +V +Y+  G + DA  V  +M 
Sbjct: 250 TGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQNMP 309

Query: 125 ER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLS 171
            + + V   SLL  C     +R  V+L E++      + P   +  V+LS
Sbjct: 310 MKPNEVVVGSLLAAC----RTRGDVELAERLMNYLVHLDPGADSNYVLLS 355


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C       N++  V  ++ +SW ++I    N G    A+  F+EM++A I  D   +
Sbjct: 512 YGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVAL 571

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ AI  +S   +GKQ+H  + +  +     V + LV MY+ CG++N A +VF     
Sbjct: 572 VSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKC 631

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+V W +++     HG+ ++A+ LF++M +T + PD  +FL +L AC H+  +++G  Y
Sbjct: 632 KDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHY 691

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             +M +   L+P + EHY  +V +LGR+G   EA  FI +M  +P  +V+ ALL AC+VH
Sbjct: 692 LDIMVSKYRLKPWQ-EHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVH 750

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  +AV +A ++L+L P++P  Y+L+SNV      W++A + RT M  RG+RK P  SW
Sbjct: 751 RNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSW 810

Query: 306 V 306
           +
Sbjct: 811 I 811



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 95/185 (51%), Gaps = 5/185 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA---GID 59
           +  Y RC    D + +++ +  R   SWNA++  + + GS  +A++ +  MR +   G  
Sbjct: 102 VFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSA 161

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            D  T+ S++ A G     + G ++H L  K+G D +  V N L+ MYA CG ++ A +V
Sbjct: 162 PDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRV 221

Query: 120 FS--SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           F     D RD+ SWNS++ GC  +G + EA+ LF  MQ      +  T + VL  C   G
Sbjct: 222 FEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELG 281

Query: 178 FIDKG 182
            +  G
Sbjct: 282 LLSLG 286



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 136/272 (50%), Gaps = 12/272 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S      V+ S+  R+ ISW  I+A F       +AL+   E+++ GI +D   I
Sbjct: 412 YIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMI 471

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+     +      KQ+H    + G   ++ ++NRL+ +Y  CG  + +  +F  +++
Sbjct: 472 GSILETCCGLKSISLLKQVHCYAIRNGL-LDLILENRLIDIYGECGEFDHSLNLFQRVEK 530

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D+VSW S++  C ++G    AV LF +MQK  I+PD    + +L A      + KG Q 
Sbjct: 531 KDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQV 590

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALLSAC 242
           + +L+R +  +E P     +++V +    G +N A   I    R     V  + A+++A 
Sbjct: 591 HGFLIRRNFPIEGPVV---SSLVDMYSGCGSMNYA---IRVFERAKCKDVVLWTAMINAT 644

Query: 243 QVHGNREIAVRSAKRVLD--LWPNDPAIYVLL 272
            +HG+ + A+   KR+L   L P+  +   LL
Sbjct: 645 GMHGHGKQAIDLFKRMLQTGLTPDHVSFLALL 676



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 3/169 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y R DS+L    V+  +  ++ ISWN++++ +       +A+  F EM Q G   D+  +
Sbjct: 314 YGRVDSAL---RVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACV 370

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S+  A+G +S    G++ HA   K    +++ V N L+ MY  CG+I  + KVF SM  
Sbjct: 371 VSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGI 430

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
           RD +SW ++L   A      EA+++  ++QK  I  D      +L  CC
Sbjct: 431 RDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCC 479



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 85/161 (52%), Gaps = 1/161 (0%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R+  SWN++++G    G   +AL  F  M+ AG  ++ +T  +++     +     G+++
Sbjct: 230 RDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGREL 289

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA + K G + N+   N L+ MYA  G ++ A +VF  + E+D +SWNS+L     + + 
Sbjct: 290 HAALLKCGSELNIQC-NALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFY 348

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            EA+  F +M +   +PD    + + SA  H   ++ G ++
Sbjct: 349 AEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREF 389



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 30/157 (19%)

Query: 80  EGKQMHALIFKIG---YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
           EG+Q+HA     G    D + F+  +LVFMY  CG ++DA ++F+ M  R + SWN+L+ 
Sbjct: 75  EGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVG 134

Query: 137 GCAHHGYSREAVQLFEQMQKTEIK---PDGTTFLVVLSAC-----------CHAGFIDKG 182
                G + EA++++  M+ +      PDG T   VL AC            H   +  G
Sbjct: 135 AYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVG 194

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
           L    L+ N             A++G+  + G L+ A
Sbjct: 195 LDKSTLVAN-------------ALIGMYAKCGLLDSA 218


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 181/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ ++R     D + ++  +  R+   WNA++AG+     G++A+  F EM+++ +D + 
Sbjct: 297 IVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNE 356

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ +++ A   +   + G  +H  I +     +V +   LV MYA CG I  A  +F  
Sbjct: 357 ITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKE 416

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + +++ ++W +++ G A+HG++ EA++ F++M    ++PD  TF+ VLSACCHAG + +G
Sbjct: 417 IPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEG 476

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            Q+F LM     LE  + +HY+ ++ LLGRAG L+EAE  +N+M  +P   V+ AL  AC
Sbjct: 477 RQFFSLMHEKYHLE-RKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFAC 535

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN  +  ++A ++++L P+D  IYVLL+N+    +    A  +R +M + G+ K PG
Sbjct: 536 RMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPG 595

Query: 303 YSWV 306
            S +
Sbjct: 596 CSCI 599



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 125/280 (44%), Gaps = 38/280 (13%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG--IDIDYFTITSIVGAIG 73
           + ++     R+ +SWN +I G+   G   +AL+ F  + + G  +  D  T+   V    
Sbjct: 176 RRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCA 235

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +   + GK++H  +   G    V + N ++ MY  CG++  A  VF  +D + +VSW +
Sbjct: 236 QMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTT 295

Query: 134 LLLGCAHHGY-------------------------------SREAVQLFEQMQKTEIKPD 162
           +++G A  G                                 +EA+ LF +MQ++++ P+
Sbjct: 296 MIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPN 355

Query: 163 GTTFLVVLSACCHAGFIDKGL-QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES 221
             T + +LSAC   G ++ G+  + Y+ R+   L        T++V +  + G + +A  
Sbjct: 356 EITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALG---TSLVDMYAKCGNIKKAIC 412

Query: 222 FINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDL 261
               +  +     + A++     HG+ + A+   +R++DL
Sbjct: 413 IFKEIP-DKNALTWTAMICGLANHGHADEAIEYFQRMIDL 451



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 7/140 (5%)

Query: 45  QALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLV 104
           +AL C S  R      D+ T   ++ A   +     G  +   + K+G+ ++VFV N  V
Sbjct: 109 RALLCSSSARP-----DHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGV 163

Query: 105 FMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPD 162
             +++ G++  A ++F     RD+VSWN+L+ G    G  REA++LF ++ +    ++PD
Sbjct: 164 HFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPD 223

Query: 163 GTTFLVVLSACCHAGFIDKG 182
             T +  +S C   G ++ G
Sbjct: 224 EVTMIGAVSGCAQMGDLELG 243


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 171/303 (56%), Gaps = 3/303 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C      + ++ ++  R+ +SW A++ G+        A   F +M+   +    
Sbjct: 366 INMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASE 425

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             + S++ A   +    +G+++H+ I +    +++++++ LV MYA CG I+ A ++FS 
Sbjct: 426 MALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSR 485

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT-EIKPDGTTFLVVLSACCHAGFIDK 181
           M  +  ++WN+++ G A  G  +EAV LFEQ+ K  + KPD  T  VVL AC H G +D+
Sbjct: 486 MRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCACTHVGMVDE 545

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           GL YF LM     +  P  EHY  IV LLGRAG L+EA +FI  M   P P ++ +LL+A
Sbjct: 546 GLHYFNLMLTLGIV--PDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNPVIWGSLLAA 603

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C+VH   E+     + ++DL PND   +VL+SN+      WDD   +R +M +R + K P
Sbjct: 604 CRVHHRMELGKIIGQHIIDLAPNDVGAHVLISNLHAEEGQWDDVEQVRGMMGSRRVEKSP 663

Query: 302 GYS 304
           G+S
Sbjct: 664 GHS 666



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 124/266 (46%), Gaps = 13/266 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D    +  +  RN  SWN +I GF   G  ++AL  F EM   G+  D  T+
Sbjct: 268 YVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITL 327

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++     +   ++G+ +H  I       ++ +QN L+ MYA CG +  A  +F +M  
Sbjct: 328 VSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMAR 387

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RD+VSW +++ G       R A  LF+ M+  ++       + +LSAC   G +DKG + 
Sbjct: 388 RDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREI 447

Query: 185 YFYL----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
           + Y+    +R D  LE       +A+V +  + G ++ A    + M R+     + A++ 
Sbjct: 448 HSYIKEKSVRTDMWLE-------SALVDMYAKCGCIDAAAEIFSRM-RHKQTLAWNAMIG 499

Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDP 266
                G  + AV   +++L L    P
Sbjct: 500 GLASQGQGKEAVALFEQLLKLRDPKP 525



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 111/223 (49%), Gaps = 2/223 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y    S  D + V+  +  R+ +SW  +I+ F   G  +  L+   EM+  G   +  TI
Sbjct: 167 YGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITI 226

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A G +    +G  ++A + + G +++V ++N L+ MY  CG ++DA K F  M  
Sbjct: 227 ISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPI 286

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R+  SWN+L+ G   +G  +EA+ +FE+M    + PD  T + VLS     G + +G +Y
Sbjct: 287 RNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQG-RY 345

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
            +    D  +         +++ +  + G +  AE    +M+R
Sbjct: 346 LHNYIKDHEIHCDIILQ-NSLINMYAKCGDMAAAEIIFENMAR 387



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 110/207 (53%), Gaps = 5/207 (2%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +     I WN +I G+ +  +   AL+ F  MR++G+  D +T+ ++  +    
Sbjct: 73  RKVFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAF 132

Query: 76  SGFK---EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           + +K    G  +HAL+ +IG+ S++FV + L+  Y    ++ DA KVF  M ERD+VSW 
Sbjct: 133 ASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWT 192

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
            ++   A  G     ++  ++MQ    KP+  T + +LSAC     +DKGL + Y   ++
Sbjct: 193 LMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGL-WVYARVDE 251

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEA 219
             +E    +   A++G+  + G +++A
Sbjct: 252 YGIEAD-VDIRNALIGMYVKCGCMSDA 277



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 83  QMHALIFKIGYDSNVFVQNRLVFMYAICGAIND---ANKVFSSMDERDLVSWNSLLLGCA 139
           ++H  + +    S+  V  RLV + A   + +D   A KVF  M +   + WN ++ G  
Sbjct: 36  ELHGRLVRAHLGSDPCVAGRLVTLLASPVSRHDMPYARKVFDRMAQPTAIVWNCMIRGYN 95

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVV 169
                 +A++LF  M+++ + PD  T   V
Sbjct: 96  SCHAPMDALELFRAMRRSGVSPDNYTMAAV 125


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 174/304 (57%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y+ C S  + ++++     ++ + WN++I G+  +G  E A   F  +  A    ++
Sbjct: 376 IVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNF 435

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ SI+     +   ++GK++H  + K G   NV V N L+ MY+ CG +    KVF  
Sbjct: 436 ITVVSILPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQ 495

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  R++ ++N+++  C  HG   + +  +EQM++   +P+  TF+ +LSAC HAG +D+G
Sbjct: 496 MMVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRG 555

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
              +  M ND  +E P  EHY+ +V L+GRAG L+ A  FI  M   P  +V+ +LL AC
Sbjct: 556 WLLYNSMINDYGIE-PNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSLLGAC 614

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H   E+    A+R+L L  +D   YVLLSN+  +   W+D   +R+++ ++G+ KKPG
Sbjct: 615 RLHNKVELTELLAERILQLKADDSGHYVLLSNLYASGKRWEDMSKVRSMIKDKGLEKKPG 674

Query: 303 YSWV 306
            SW+
Sbjct: 675 SSWI 678



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 134/277 (48%), Gaps = 9/277 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C   L+   V+S +   + +SW+ +IAG+      +++ K +  M   G+  +    
Sbjct: 278 YCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVA 337

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A+G +   K+GK+MH  + K G  S+V V + L+ MYA CG+I +A  +F    +
Sbjct: 338 TSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSD 397

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D++ WNS+++G    G    A   F ++   E +P+  T + +L  C   G + +G + 
Sbjct: 398 KDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEI 457

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES-FINSMSRNPGPSVYKALLSACQ 243
           + Y+ ++   L         +++ +  + GFL   E  F   M RN   + Y  ++SAC 
Sbjct: 458 HGYVTKSGLGLNVSVG---NSLIDMYSKCGFLELGEKVFKQMMVRN--VTTYNTMISACG 512

Query: 244 VHGNRE--IAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278
            HG  E  +A     +     PN      LLS  S A
Sbjct: 513 SHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHA 549



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 1/146 (0%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           I+WNAI+ G   +G   +A+  +  M Q G+  D +T   ++ A   +   + G+ +H  
Sbjct: 99  IAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHET 158

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           +      +NV+VQ  ++ M+A CG++ DA ++F  M +RDL SW +L+ G   +G   EA
Sbjct: 159 MHG-KTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEA 217

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSAC 173
           + LF +M+   + PD      +L AC
Sbjct: 218 LLLFRKMRSEGLMPDSVIVASILPAC 243



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 121/253 (47%), Gaps = 3/253 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           +++C S  D + ++  +  R+  SW A+I G    G   +AL  F +MR  G+  D   +
Sbjct: 177 FAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIV 236

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A G +   K G  +     + G++S+++V N ++ MY  CG   +A++VFS M  
Sbjct: 237 ASILPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVY 296

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+VSW++L+ G + +   +E+ +L+  M    +  +      VL A      + +G + 
Sbjct: 297 SDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEM 356

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              +  +  +        +A++ +    G + EAES     S +    V+ +++    + 
Sbjct: 357 HNFVLKEGLMSDVVVG--SALIVMYANCGSIKEAESIFECTS-DKDIMVWNSMIVGYNLV 413

Query: 246 GNREIAVRSAKRV 258
           G+ E A  + +R+
Sbjct: 414 GDFESAFFTFRRI 426



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 8/118 (6%)

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGY------DSNVFVQNRLVFMYAICGAIND 115
           +FT+TS    +       E + +HAL+  +G+       S+ F  ++LV +Y   G++  
Sbjct: 28  HFTVTSF-HRLKSPPNLHEARTLHALLLVLGFFQPTCPHSSSFA-SQLVNVYVNFGSLQH 85

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           A   F ++  + +++WN++L G    G+  +A+  +  M +  + PD  T+ +VL AC
Sbjct: 86  AFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKAC 143


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 173/304 (56%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+ C +      ++ S++ ++ +SW ++I+ + + G   +AL  F  M++  ++ D 
Sbjct: 355 IDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDS 414

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ SI+ A   +S   +GK++H  IF+ G+       N LV MYA CG++ +A KVF  
Sbjct: 415 ITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFIC 474

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
              + LV W +++     HG  + AV+LF  M+  ++ PD  TFL +L AC H+G I++G
Sbjct: 475 TRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEG 534

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            +    M+    LE P  EHY  +V LLGRA  L EA  F+ SM   P   V+ A L AC
Sbjct: 535 KRLLETMKCKYQLE-PWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGAC 593

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++H N+++   +A+++LDL P+ P  YVL+SNV  A+  W D  ++R  M   G++K PG
Sbjct: 594 RIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPG 653

Query: 303 YSWV 306
            SW+
Sbjct: 654 CSWI 657



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 107/188 (56%), Gaps = 2/188 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQI-SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C+  L  + ++  +  RN + SWN+II+ +   G   +AL  F EM++AG+  + +T
Sbjct: 55  YAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYT 114

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + + + A    S  K G ++HA I K     +V+V N LV M+   G ++ A ++F  +D
Sbjct: 115 LVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELD 174

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           E+D ++WNS++ G   +G   EA+Q F  +Q   +KPD  + + +L+A    G++  G +
Sbjct: 175 EKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKE 234

Query: 185 -YFYLMRN 191
            + Y M+N
Sbjct: 235 IHAYAMKN 242



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 76/133 (57%), Gaps = 1/133 (0%)

Query: 53  MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112
           MR  G+  D FT   ++ A GV+     G ++H LI K GYDS VFV N LV MYA C  
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 113 INDANKVFSSMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           I  A K+F  M+ER D+VSWNS++   + +G   EA+ LF +MQK  +  +  T +  L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 172 ACCHAGFIDKGLQ 184
           AC  + F   G++
Sbjct: 121 ACEDSSFKKLGME 133



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 128/250 (51%), Gaps = 8/250 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C        V+  +  ++ ISW  +IA +       +ALK   +++  G+D+D   I
Sbjct: 258 YSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMI 317

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S + A   +      K++H    K G  S++ +QN ++ +YA CG IN A ++F S+  
Sbjct: 318 GSTLLACSGLRCLSHAKEVHGYTLKRGL-SDLMMQNMIIDVYADCGNINYATRMFESIKC 376

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D+VSW S++    H+G + EA+ +F  M++T ++PD  T + +LSA      ++KG + 
Sbjct: 377 KDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEI 436

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSACQ 243
           + ++ R    LE        ++V +    G L  A + FI   +R+    ++  +++A  
Sbjct: 437 HGFIFRKGFMLEGSTV---NSLVDMYACCGSLENAYKVFI--CTRSKSLVLWTTMINAYG 491

Query: 244 VHGNREIAVR 253
           +HG  + AV 
Sbjct: 492 MHGRGKAAVE 501



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 82/156 (52%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  ++ I+WN++IAGF   G   +AL+ F  ++ A +  D  ++ SI+ A G +  
Sbjct: 169 IFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGY 228

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              GK++HA   K   DSN+ + N L+ MY+ C  +  A  VF  M  +DL+SW +++  
Sbjct: 229 LLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAA 288

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            A +    EA++L  ++Q   +  D       L AC
Sbjct: 289 YAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLAC 324


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 104/281 (37%), Positives = 169/281 (60%), Gaps = 2/281 (0%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
           ++++WNA+I G        +A+K +  +R+ GI  +Y T+ S+  A   ++  +EG+Q+H
Sbjct: 676 DRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSLA-ATANLAVLEEGQQLH 734

Query: 86  ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
            L+ K+G++S++ V N  + MY  CG ++D  K+      R  +SWN L+   A HG  +
Sbjct: 735 GLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQ 794

Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205
           +A + F +M K   KPD  TF+ +LSAC H G +D+GL Y+  M  +  + P   EH   
Sbjct: 795 KARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPG-IEHCVC 853

Query: 206 IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265
           I+ LLGR+G L+ AE FI  M   P    +++LL+AC++HGN E+A ++A+ +L+L P+D
Sbjct: 854 IIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSD 913

Query: 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            + YVL SNV   +  W+D  ++R  M +  I+K+P  SWV
Sbjct: 914 DSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWV 954



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 90/158 (56%), Gaps = 3/158 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +R RN+ SW+ +++G+  +G  E+A+  F +M   G++ + F + S++ A    SG
Sbjct: 330 VFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSR-SG 388

Query: 78  F--KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +   EG Q+H  + K G   +V+V   LV  Y   G + +A K+F  M + ++VSW SL+
Sbjct: 389 YMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLM 448

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +G +  G   E + ++++M++  +  +  TF  V S+C
Sbjct: 449 VGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC 486



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 83/150 (55%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++  +   N +SW +++ G+ + G+  + L  +  MRQ G+  +  T  ++  + G++
Sbjct: 430 QKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLL 489

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G Q+   I + G++ +V V N L+ M++   ++ +A  VF  M+E D++SWN+++
Sbjct: 490 EDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMI 549

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
              AHHG  RE+++ F  M+    + + TT
Sbjct: 550 SAYAHHGLCRESLRCFHWMRHLHNETNSTT 579



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 94/173 (54%), Gaps = 1/173 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           V+  +   + ISWNA+I+ + + G   ++L+CF  MR    + +  T++S++     +  
Sbjct: 533 VFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDN 592

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K G+ +H L+ K+G DSNV + N L+ +Y+  G   DA  VF +M ERDL+SWNS++  
Sbjct: 593 LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMAC 652

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190
               G   + +++  ++ +   KPD  T+  ++         ++ ++ + L+R
Sbjct: 653 YVQDGKCLDGLKILAELLQMG-KPDRVTWNALIGGHAENEEPNEAVKAYKLIR 704



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 116/302 (38%), Gaps = 83/302 (27%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           +S+C    D   ++ ++  R+ +SWNA+I G+   G  + +   F  M + G+  D +T+
Sbjct: 137 HSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTL 196

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDS---------NVFVQ---------------- 100
            S++ A     G     Q+H +I ++GY S         N + +                
Sbjct: 197 GSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLK 256

Query: 101 ----------------------NRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
                                 N L+ MYA  G I DA + F  M+E++++SW SL+ G 
Sbjct: 257 KDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGY 316

Query: 139 AHHGYSR---------------------------------EAVQLFEQMQKTEIKPDGTT 165
           A HGY                                   EAV LF QM    ++P+G  
Sbjct: 317 AKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFM 376

Query: 166 FLVVLSACCHAGFI-DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
              +++AC  +G++ D+G Q    +     L        TA+V   G  G +  A+    
Sbjct: 377 VASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVG--TALVHFYGSIGLVYNAQKLFE 434

Query: 225 SM 226
            M
Sbjct: 435 EM 436



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 39/175 (22%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ Y +    +  +NV+  +  R+ +SW A+++G+   G  E+A   FS+MR  G+    
Sbjct: 72  IIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGV---- 127

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
                              K  HAL                V  ++ CG + DA+ +F +
Sbjct: 128 -------------------KANHAL----------------VDFHSKCGKMEDASYLFGT 152

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           M ERD+VSWN+++ G A  G++ ++  +F  M +  + PD  T   VL A    G
Sbjct: 153 MMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGG 207



 Score = 44.7 bits (104), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 6/172 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C    D   +      R+++SWN +I+ F   G  ++A + F EM + G   D+ T 
Sbjct: 756 YGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTF 815

Query: 66  TSIVGAIGVISGFKEGKQMH-ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM- 123
            S++ A        EG   + ++  + G    +     ++ +    G ++ A      M 
Sbjct: 816 VSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMP 875

Query: 124 -DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
               DL +W SLL  C  HG    A +  E +   E+ P   +  V+ S  C
Sbjct: 876 VPPNDL-AWRSLLAACRIHGNLELARKTAEHL--LELDPSDDSAYVLYSNVC 924


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 172/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C       N++  +  ++ ++W +++  F   G   +A+  F +M  AGI  D   +
Sbjct: 510 YGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVAL 569

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             I+GAI  +S   +GK++H  + +  +     V + LV MY+ CG++N A KVF     
Sbjct: 570 VGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKC 629

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+V W +++     HG+ ++A+ +F++M +T + PD  +FL +L AC H+  +D+G  Y
Sbjct: 630 KDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFY 689

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
             +M +   L+P + EHY  +V LLGR+G   EA  FI SM   P   V+ ALL AC++H
Sbjct: 690 LDMMVSKYKLQPWQ-EHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIH 748

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N E+A+ +  ++L+L P++P  YVL+SNV      W++  +IRT M  +G+RK P  SW
Sbjct: 749 KNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSW 808

Query: 306 V 306
           +
Sbjct: 809 I 809



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 5/187 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ----AGI 58
           +  Y +C    D   ++  +  R   SWNA+I    + G   +A+  +  MR     AG 
Sbjct: 100 LFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGA 159

Query: 59  DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
             D  T+ S++ A G     + G ++H L  K G D +  V N LV MYA CG ++ A +
Sbjct: 160 APDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALR 219

Query: 119 VFSSM-DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           VF  M D RD+ SWNS + GC  +G   EA+ LF +MQ      +  T + VL  C    
Sbjct: 220 VFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELA 279

Query: 178 FIDKGLQ 184
            ++ G +
Sbjct: 280 QLNHGRE 286



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 133/270 (49%), Gaps = 8/270 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S      V+  +R ++ +SW  IIA +       +A+  F   ++ GI +D   +
Sbjct: 410 YIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMM 469

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ A   +      KQ+H+   + G   ++ ++NR++ +Y  CG +  A  +F  +D+
Sbjct: 470 GSILEACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDK 528

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +D+V+W S++   A +G   EAV LF +M    I+PD    + +L A      + KG + 
Sbjct: 529 KDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEI 588

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + +L+R      P      +++V +    G +N A    +  ++     ++ A+++A  +
Sbjct: 589 HGFLIRGKF---PVEGAVVSSLVDMYSGCGSMNYALKVFDE-AKCKDVVLWTAMINATGM 644

Query: 245 HGNREIAVRSAKRVLD--LWPNDPAIYVLL 272
           HG+ + A+   KR+L+  + P+  +   LL
Sbjct: 645 HGHGKQAIYIFKRMLETGVSPDHVSFLALL 674



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 11/198 (5%)

Query: 6   YSRC---DSSLDFQNVYSSVRT-RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
           Y++C   DS+L    V+  +R  R+  SWN+ I+G    G   +AL  F  M+  G  ++
Sbjct: 208 YAKCGLLDSAL---RVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMN 264

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +T   ++     ++    G+++HA + K G + N+   N L+ MYA CG ++ A +VF 
Sbjct: 265 SYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQC-NALLVMYARCGWVDSALRVFR 323

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            + ++D +SWNS+L     +    EA+  F +M +    PD    + +LSA  H G +  
Sbjct: 324 EIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLIN 383

Query: 182 GLQ---YFYLMRNDASLE 196
           G +   Y    R D+ L+
Sbjct: 384 GREVHAYAVKQRLDSDLQ 401



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 6/174 (3%)

Query: 3   ILTYSRC---DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID 59
           ++ Y+RC   DS+L    V+  +  ++ ISWN++++ +       +A+  F EM Q G +
Sbjct: 306 LVMYARCGWVDSAL---RVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFN 362

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            D+  I S++ A+G +     G+++HA   K   DS++ + N L+ MY  C ++  + +V
Sbjct: 363 PDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARV 422

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           F  M  +D VSW +++   A      EA+  F   QK  IK D      +L AC
Sbjct: 423 FDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEAC 476



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 31/197 (15%)

Query: 68  IVGAIGVISGFKEGKQMHALIFK---IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++  + V     EG+Q+HA       +G D   F+  +L+FMY  CG + DA+++F  M 
Sbjct: 61  VLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMP 120

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE----IKPDGTTFLVVLSAC------- 173
            R + SWN+L+  C   G + EAV ++  M+ +E      PDG T   VL AC       
Sbjct: 121 ARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGR 180

Query: 174 ----CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
                H   +  GL    L+ N             A+VG+  + G L+ A      M   
Sbjct: 181 CGSEVHGLAVKSGLDRSTLVAN-------------ALVGMYAKCGLLDSALRVFEWMRDG 227

Query: 230 PGPSVYKALLSACQVHG 246
              + + + +S C  +G
Sbjct: 228 RDVASWNSAISGCVQNG 244


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 181/304 (59%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I+ ++R     D + ++  +  R+   WNA++AG+     G++A+  F EM+++ +D + 
Sbjct: 297 IVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNE 356

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ +++ A   +   + G  +H  I +     +V +   LV MYA CG I  A  VF+ 
Sbjct: 357 ITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNE 416

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +  ++ ++W S++ G A+HG++ EA++ F++M    ++PD  TF+ VLSACCHAG ++ G
Sbjct: 417 IPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAG 476

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            Q+F LM     LE  + +HY+ ++ LLGRAG L+EAE  +N+M  +P   V+ AL  AC
Sbjct: 477 RQFFSLMHAKYHLE-RKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFAC 535

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           ++HGN  +  ++A ++++L P+D  IYVLL+N+    +    A  +R +M + G+ K PG
Sbjct: 536 RMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPG 595

Query: 303 YSWV 306
            S +
Sbjct: 596 CSCI 599



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 124/280 (44%), Gaps = 38/280 (13%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG--IDIDYFTITSIVGAIG 73
           + ++     R+ +SWN +I G+   G   +AL+ F  + + G  +  D  T+   V    
Sbjct: 176 RRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCA 235

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS------------ 121
            +   + GK++H  +   G    V + N ++ MY  CG++  AN VF             
Sbjct: 236 QMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTT 295

Query: 122 -------------------SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
                               M ERD+  WN+L+ G   +   +EA+ LF +MQK+++ P+
Sbjct: 296 MIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPN 355

Query: 163 GTTFLVVLSACCHAGFIDKGL-QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES 221
             T + +LSAC   G ++ G+  + Y+ R+   L        T++V +  + G + +A  
Sbjct: 356 EITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALG---TSLVDMYAKCGNIKKAIC 412

Query: 222 FINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDL 261
             N +        + +++     HG+ + A+   +R++DL
Sbjct: 413 VFNEIPVQ-NALTWTSMICGLANHGHADEAIEYFQRMIDL 451



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 2/124 (1%)

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D+ T   ++ A   +     G  +   + K+G+ ++VFV N  +  +++ G +  A ++F
Sbjct: 120 DHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLF 179

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLSACCHAGF 178
                RD+VSWN+L+ G    G  REA++LF ++ +    ++PD  T +  +S C   G 
Sbjct: 180 DESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGD 239

Query: 179 IDKG 182
           ++ G
Sbjct: 240 LELG 243


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 108/290 (37%), Positives = 161/290 (55%), Gaps = 1/290 (0%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++  +  +N +SW  ++ GF   G  E+AL  FS+M + G+  + FTI S + A   I 
Sbjct: 302 ELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIG 361

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
           G + G ++H  I   G      +   LV MYA CG I  A++VF   +++ + +W  ++ 
Sbjct: 362 GLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIW 421

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G A HG+S +A+  F+QM    IKPD   FL +L+AC H+G +D GL +F  MR D  +E
Sbjct: 422 GWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIE 481

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256
            P  +HYT IV +LGR+G L EA  FI  M  NP   ++ AL  AC+ H   ++A  +  
Sbjct: 482 -PSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALN 540

Query: 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++L L P     Y+ LSN   A   W+DA  +R LM NRG+ K  G+S +
Sbjct: 541 KLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCI 590



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 116/268 (43%), Gaps = 19/268 (7%)

Query: 2   QILTYSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           Q+++ S    S++    V++  + +N  ++NA+I G         A+  F  M ++GI  
Sbjct: 118 QLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKP 177

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D  T   ++ ++  +   + G  +H +I + G + + FV+  LV MY     +  A KVF
Sbjct: 178 DRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVF 237

Query: 121 SSMDER-----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
               ER       + WN L+ GC   G  ++AV+LF+ M K E      ++  ++     
Sbjct: 238 DESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKE----NVSWSTLIDGFAK 293

Query: 176 AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN---PGP 232
            G +D+ ++ F  M     +       +T +V    R G   +A S  + M      P  
Sbjct: 294 NGDMDRAMELFDQMPEKNVVS------WTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNA 347

Query: 233 SVYKALLSACQVHGNREIAVRSAKRVLD 260
               + LSAC   G  E  +R  K + D
Sbjct: 348 FTIVSALSACAKIGGLEAGLRIHKYIKD 375



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 111/247 (44%), Gaps = 46/247 (18%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN +I G C  GS ++A+K F  M +   ++ + T+         I GF +         
Sbjct: 253 WNVLIKGCCKAGSMKKAVKLFKAMPKKE-NVSWSTL---------IDGFAKN-------- 294

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
                                G ++ A ++F  M E+++VSW +++ G + +G S +A+ 
Sbjct: 295 ---------------------GDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALS 333

Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVG 208
           +F +M +  ++P+  T +  LSAC   G ++ GL+ + Y+  N   L        TA+V 
Sbjct: 334 MFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALG---TALVD 390

Query: 209 LLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL--DLWPNDP 266
           +  + G + E+ S +   +       +  ++    +HG+ E A+   K+++   + P++ 
Sbjct: 391 MYAKCGNI-ESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEV 449

Query: 267 AIYVLLS 273
               LL+
Sbjct: 450 VFLALLT 456



 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 68/181 (37%), Gaps = 30/181 (16%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +      V+     ++  +W  +I G+   G  EQA+ CF +M  AGI  D    
Sbjct: 392 YAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVF 451

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRL--------------VFMYAICG 111
            +++ A            MH+    IG   N F   RL              V M    G
Sbjct: 452 LALLTAC-----------MHSGQVDIGL--NFFDSMRLDYCIEPSMKHYTLIVDMLGRSG 498

Query: 112 AINDANKVFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
            + +A +    M    D V W +L   C  H  ++ A     ++ K E  P  T   + L
Sbjct: 499 QLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLE--PTHTGNYIFL 556

Query: 171 S 171
           S
Sbjct: 557 S 557



 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 72  IGVISGFK---EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           I +I G K   +  Q+HA I      S+  +  +L+   ++  +IN +  VF+    ++L
Sbjct: 85  ISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNL 144

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
            ++N+L+ G   + +   A+  F  M ++ IKPD  T+  VL +
Sbjct: 145 FTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKS 188


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 176/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      ++V++ +  +N +SWN ++A +      ++ALK F  +    +  D  TI
Sbjct: 356 YGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITI 415

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A+  ++   EGKQ+H+ I K+G  SN F+ N +V+MYA CG +  A + F  M  
Sbjct: 416 ASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVC 475

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+VSWN++++  A HG+ R ++Q F +M+    KP+G+TF+ +L+AC  +G ID+G  +
Sbjct: 476 KDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGF 535

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M+ +  ++P   EHY  ++ LLGR G L+EA+ FI  M   P   ++ +LL+A + H
Sbjct: 536 FNSMKVEYGIDPG-IEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNH 594

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            +  +A  +A+ +L L  ++   YVLLSN+      W+D   I+ LM  +G+ K  G S 
Sbjct: 595 NDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSM 654

Query: 306 V 306
           V
Sbjct: 655 V 655



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 110/215 (51%), Gaps = 5/215 (2%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
           +++  +   +   WN II G+ N G  ++A+  +  M   GI  D FT   ++ A G + 
Sbjct: 79  DMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELL 138

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
               G+++H  + KIG+D +V+V N L+ MY   G I  A KVF  M  RDLVSWNS++ 
Sbjct: 139 ALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVS 198

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASL 195
           G    G    ++  F++M +   K D    +  L AC     +  G++ +  ++R++  L
Sbjct: 199 GYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELEL 258

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSM-SRN 229
           +       T+++ + G+ G ++ AE   N + S+N
Sbjct: 259 DIMVQ---TSLIDMYGKCGKVDYAERVFNRIYSKN 290



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 17/213 (7%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ +SWN++++G+   G G  +L CF EM + G   D F + S +GA  + 
Sbjct: 179 EKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIE 238

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G ++H  + +   + ++ VQ  L+ MY  CG ++ A +VF+ +  +++V+WN+++
Sbjct: 239 HCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMI 298

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G                 +  ++ PD  T + +L +C  +G + +G            L
Sbjct: 299 GG---------------MQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFL 343

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
             P     TA+V + G+ G L  AE   N M+ 
Sbjct: 344 --PYLVLETALVDMYGKCGELKLAEHVFNQMNE 374



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 118/274 (43%), Gaps = 22/274 (8%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      + V++ + ++N ++WNA+I G                     +  D  T+
Sbjct: 270 YGKCGKVDYAERVFNRIYSKNIVAWNAMIGGM---------------QEDDKVIPDVITM 314

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++ +        EGK +H    +  +   + ++  LV MY  CG +  A  VF+ M+E
Sbjct: 315 INLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNE 374

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           +++VSWN+++     +   +EA+++F+ +    +KPD  T   VL A        +G Q 
Sbjct: 375 KNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQI 434

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + Y+M+         +    AIV +  + G L  A  F + M      S +  ++ A  +
Sbjct: 435 HSYIMKLGLGSNTFIS---NAIVYMYAKCGDLQTAREFFDGMVCKDVVS-WNTMIMAYAI 490

Query: 245 HGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVS 276
           HG    +++  S  R     PN      LL+  S
Sbjct: 491 HGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACS 524



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
           G + +A  +F  M+  D   WN ++ G  ++G  +EA+  + +M+   I+ D  TF  V+
Sbjct: 72  GLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVI 131

Query: 171 SAC 173
            AC
Sbjct: 132 KAC 134



 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++C      +  +  +  ++ +SWN +I  +   G G  +++ FSEMR  G   + 
Sbjct: 454 VYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNG 513

Query: 63  FTITSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T  S++ A  +     EG    +++  + G D  +     ++ +    G +++A K F 
Sbjct: 514 STFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEA-KCF- 571

Query: 122 SMDERDLVS----WNSLLLGCAHH 141
            ++E  LV     W SLL    +H
Sbjct: 572 -IEEMPLVPTARIWGSLLAASRNH 594


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 100/299 (33%), Positives = 174/299 (58%), Gaps = 1/299 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+     + ++V++ +  ++ + W+A+I+G+    S ++AL  F+EM+  GI  D  T+
Sbjct: 299 YSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTM 358

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +    + K +H  + K G+   + + N L+ MYA CG++  A ++F  M  
Sbjct: 359 LSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPR 418

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++++SW  ++   A HG +  A++ F QM+   I+P+G TF+ VL AC HAG +++G + 
Sbjct: 419 KNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKI 478

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           FY M N+ ++ P    HY  +V L GRA  L EA   + +M   P   ++ +L++AC+VH
Sbjct: 479 FYSMINEHNITPKHV-HYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVH 537

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           G  E+   +AKR+L+L P+    +V LSN+      W+D G +R LM ++GI K+ G S
Sbjct: 538 GEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCS 596



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 7/228 (3%)

Query: 4   LTYSRC--DSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
           L  S C   SSLD+  +V++ +        N  +         E+ L  +  MR  G+ +
Sbjct: 61  LVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAV 120

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           D F+   ++ A+  +    EG ++H L  K+G+DS+ FVQ  LV MYA CG I +A  +F
Sbjct: 121 DRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMF 180

Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
             M  RD+V+W+ ++ G    G   +A+ LFE+M+   ++PD      VLSAC  AG + 
Sbjct: 181 DKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLS 240

Query: 181 KG-LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227
            G + + ++M N+  ++P      +A+V +    G ++ A +    M+
Sbjct: 241 YGKMIHDFIMENNIVVDPHLQ---SALVTMYASCGSMDLALNLFEKMT 285



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 134/293 (45%), Gaps = 38/293 (12%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+ C    + + ++  +  R+ ++W+ +I G+C  G    AL  F EM+   ++ D   +
Sbjct: 167 YAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMML 226

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA------------- 112
           ++++ A G       GK +H  I +     +  +Q+ LV MYA CG+             
Sbjct: 227 STVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTP 286

Query: 113 ------------------INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
                             I +A  VF+ M ++DLV W++++ G A     +EA+ LF +M
Sbjct: 287 KNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEM 346

Query: 155 QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRA 213
           Q   IKPD  T L V++AC H G +D+    + ++ +N      P      A++ +  + 
Sbjct: 347 QSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPIN---NALIEMYAKC 403

Query: 214 GFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPN 264
           G L  A    + M R    S +  ++SA  +HG+   A+R   ++ D  + PN
Sbjct: 404 GSLERARRIFDKMPRKNVIS-WTCMISAFAMHGDAGSALRFFHQMEDENIEPN 455


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 103/291 (35%), Positives = 170/291 (58%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +R ++++ W  +I G    G  E AL  FSEM       D +TI+S+V +   +
Sbjct: 276 RKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKL 335

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +    G+ +H   F +G + ++ V + LV MY  CG   DA  +FS+M  R++VSWNS++
Sbjct: 336 ASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMI 395

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G A +G   EA+ L+E M +  +KPD  TF+ VLSAC HAG +++G +YF  M +   L
Sbjct: 396 GGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGL 455

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           EP   +HY  +V L GR+G +++A   I+SMS+ P   ++  +LS C + G+ +    +A
Sbjct: 456 EPT-PDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAA 514

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + +++L P +   Y++LSN+  A   W D   IR+LM ++ ++K   YSW+
Sbjct: 515 RCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWI 565



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 100/185 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     D + ++ ++ +R+ +S+N +I+GF   G G  AL  F  M++ G+    +T 
Sbjct: 99  YAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTH 158

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A   +   + GKQ+H  I       NVFV N L  +YA CG I+ A ++F  M  
Sbjct: 159 VSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVI 218

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++V+WN ++ G   +    + + LF +MQ + +KPD  T   VL A   AG+ID+  + 
Sbjct: 219 RNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKV 278

Query: 186 FYLMR 190
           F  +R
Sbjct: 279 FGEIR 283



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 46/229 (20%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y+RC      + ++  +  RN ++WN +I+G+      E+ +  F EM+ + +  D  T 
Sbjct: 200 YARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTA 259

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +S++GA                                   Y   G I++A KVF  + E
Sbjct: 260 SSVLGA-----------------------------------YIQAGYIDEARKVFGEIRE 284

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL-- 183
           +D V W  +++GCA +G   +A+ LF +M     +PDG T   V+S+C     +  G   
Sbjct: 285 KDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVV 344

Query: 184 --QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM-SRN 229
             + F +  ND  L        +A+V +  + G   +A +  ++M +RN
Sbjct: 345 HGKAFLMGVNDDLLVS------SALVDMYCKCGVTRDAWTIFSTMQTRN 387



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 1/107 (0%)

Query: 79  KEGKQMHAL-IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
           K G+  HA  +F      + F  N ++ +YA  G + D   +F +M  RD VS+N+++ G
Sbjct: 70  KSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISG 129

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            A +G    A+ +F +MQK  +KP   T + VL+AC     + +G Q
Sbjct: 130 FAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQ 176



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C  + D   ++S+++TRN +SWN++I G+   G   +AL  +  M +  +  D  T 
Sbjct: 367 YCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTF 426

Query: 66  TSIVGAIGVISGFKEGKQMH-ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM- 123
             ++ A       +EGK+   ++  + G +        +V ++   G ++ A  + SSM 
Sbjct: 427 VGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMS 486

Query: 124 DERDLVSWNSLLLGCAHHG 142
            E + + W ++L  C   G
Sbjct: 487 QEPNSLIWTTVLSVCVMKG 505


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 168/291 (57%), Gaps = 3/291 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +NV+ +   R+++S+N +I G        ++L  FSEM+  G+  D  +    + A   +
Sbjct: 299 RNVFDT-SLRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANL 357

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  K+GK++H  + +  +  ++FV N L+  Y  CG I  A  +F  M  +D+ SWN+++
Sbjct: 358 TAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMI 417

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           LG    G    A+ LFE M+K +++ D  +F+ VLSAC H G ++KG +YF  ++    +
Sbjct: 418 LGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELKARG-I 476

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           EP +  HY  +V LLGRAG + EA   I  +   P  +++ ALL AC+++GN E+A  +A
Sbjct: 477 EPTQM-HYACMVDLLGRAGLMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAA 535

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + + +L P     Y LLSN+   T  WD+A  IR LM +RG++K PG SWV
Sbjct: 536 EHLFELKPEHSGYYTLLSNMYAETGRWDEANRIRELMKSRGVKKSPGCSWV 586



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 1/178 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGF-CNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y  C    D   V+  +  ++ +SWN +I  F  N      AL  F  M   G+  +  T
Sbjct: 86  YGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFRLMIDEGLKPNSIT 145

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I+S +  +  +  FK G+++H    ++G +S++F+ N L+ MYA  G   +A+ VF  +D
Sbjct: 146 ISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLD 205

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            +++VSWN+++   A + +   AV L  QMQ     P+  TF  VL AC   G +  G
Sbjct: 206 AKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPG 263



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 83/154 (53%), Gaps = 2/154 (1%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
           WN +I G+   G G   L+ +++M + G+  D  T   ++ A       ++G+++H  + 
Sbjct: 10  WNTLIRGYSIAGVG-GGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVV 68

Query: 90  KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS-REAV 148
           K+G++S+VFV N L+  Y  CG + DA +VF  M E+DLVSWN+++   + +G+  R+A+
Sbjct: 69  KLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDAL 128

Query: 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            +F  M    +KP+  T    L       F   G
Sbjct: 129 DMFRLMIDEGLKPNSITISSFLPVLVELEFFKAG 162



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 97/187 (51%), Gaps = 2/187 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++   S +  NV+  +  +N +SWNA+IA F        A+    +M+  G   +  T 
Sbjct: 188 YAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTF 247

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           T+++ A   +   + GK++HA    +G   ++FV N L  MYA  G +  A  VF +   
Sbjct: 248 TNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDT-SL 306

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           RD VS+N L++G +      E++ LF +MQ   +K D  +F+  LSAC +   I +G + 
Sbjct: 307 RDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEI 366

Query: 185 YFYLMRN 191
           + +L+R 
Sbjct: 367 HGFLLRK 373



 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 74/167 (44%), Gaps = 3/167 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      +N++  +  ++  SWN +I G+  LG  + A+  F  MR+  ++ D  + 
Sbjct: 389 YTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSF 448

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD- 124
            +++ A       ++G++    +   G +        +V +    G + +A ++   +  
Sbjct: 449 IAVLSACSHGGLLEKGRKYFDELKARGIEPTQMHYACMVDLLGRAGLMEEAAELIKGLPI 508

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
             D   W +LL  C  +G    A    E +   E+KP+ + +  +LS
Sbjct: 509 VPDANIWGALLGACRIYGNLELAAWAAEHL--FELKPEHSGYYTLLS 553


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 168/279 (60%), Gaps = 1/279 (0%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           + W +IIAG+   G  E+AL  +  M+   I  +  T+ S++ A   ++  ++GKQ+HA 
Sbjct: 381 VLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHAR 440

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
             K G    + +++ L  MYA CG++ +   +F  M +RD+VSWN+++ G + +G+ REA
Sbjct: 441 TIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREA 500

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           ++LFE+M+    KPD  TF+ VLSAC H G + +G  YF +M ++  L  PR EHY  +V
Sbjct: 501 LELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCL-VPRVEHYACMV 559

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267
            +L RAG LNEA+ FI S   + G  +++ LL AC+ H N E+   + +++++L   + +
Sbjct: 560 DVLSRAGKLNEAKEFIESAIIDHGMCLWRILLPACRNHCNYELGAYAGEKLMELGSRESS 619

Query: 268 IYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            YVLLS++  A     D   +R +M  RG+RK+ G SW+
Sbjct: 620 AYVLLSSIYTAMGRLADVVRVRRMMKVRGVRKETGCSWI 658



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 98/182 (53%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++C +      ++     +N I+W+A+I G+   G   +ALK FS+M  AG     
Sbjct: 255 VTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSE 314

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+  ++ A   ++  +EGKQ H  + K GY++ ++    LV MYA  G   DA K F  
Sbjct: 315 FTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDF 374

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           + E DLV W S++ G   +G + EA+ ++ +MQ  +I P+  T   VL AC +   +++G
Sbjct: 375 LLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQG 434

Query: 183 LQ 184
            Q
Sbjct: 435 KQ 436



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 135/274 (49%), Gaps = 7/274 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +     + + ++  +  RN +SW  +I+G+ +    ++AL  F  MR    +++ F  
Sbjct: 157 YCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVF 216

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS++ A+        GKQ+H ++ K G    V V N LV MYA CG +N +  +F    +
Sbjct: 217 TSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSD 276

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
           ++ ++W++L+ G +  G S +A++LF +M      P   T + VL AC     I++G Q 
Sbjct: 277 KNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQT 336

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + YL+++    +   A   TA+V +  + GF  +A    + +   P   ++ ++++    
Sbjct: 337 HGYLLKSGYETQIYTA---TALVDMYAKFGFTGDARKGFDFL-LEPDLVLWTSIIAGYVQ 392

Query: 245 HGNREIAVRSAKR--VLDLWPNDPAIYVLLSNVS 276
           +G  E A+    R  +  + PN+  +  +L   S
Sbjct: 393 NGKNEEALSMYGRMQMRKILPNELTMASVLKACS 426



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 5/215 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQ--ALKCFSEMRQAGIDIDYF 63
           Y++C      + V+ +++ +N +S+N +I G  + GS      L+ F  M    I  D  
Sbjct: 53  YAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAH 112

Query: 64  TITSIVGAIGVISGFK-EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           T   +  A  +  G   + +Q+H L  K     +VFV + LV  Y   G + +A K+F  
Sbjct: 113 TFPGVFTAAALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDR 172

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M ER+LVSW +++ G A    ++EA+ +F  M+  E   +   F  VLSA     F+D G
Sbjct: 173 MPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSG 232

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLN 217
            Q   ++  +  LE        A+V +  + G LN
Sbjct: 233 KQVHCVVVKNGVLEFVSV--LNALVTMYAKCGNLN 265



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 3/98 (3%)

Query: 78  FKEGKQMHALIFKIGYDSNV-FVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
            K+G+ +HA I KI Y S+  ++ N L+  YA CG ++ A  VF ++  +++VS+N L+ 
Sbjct: 23  LKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIH 82

Query: 137 GCAHHGY--SREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           G +H+G   S   ++LF +M    I PD  TF  V +A
Sbjct: 83  GLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTA 120



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C S  +   ++  +  R+ +SWNA+I+G    G G +AL+ F EMR  G   D+ T 
Sbjct: 460 YAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITF 519

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR-----LVFMYAICGAINDANK-V 119
            +++ A   +   K G       F + +D    V        +V + +  G +N+A + +
Sbjct: 520 VTVLSACSHMGIVKRGWAY----FNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFI 575

Query: 120 FSSMDERDLVSWNSLLLGCAHH 141
            S++ +  +  W  LL  C +H
Sbjct: 576 ESAIIDHGMCLWRILLPACRNH 597


>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 974

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 182/303 (60%), Gaps = 3/303 (0%)

Query: 6   YSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y      +D + ++S ++  +  + W A+I+G+      E+AL+ +  MR   I  D   
Sbjct: 657 YMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAA 716

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             S++ A   +S  + G+++H+LIF  G++ +    + L+ MYA CG +  + +VF  M 
Sbjct: 717 FASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMP 776

Query: 125 ERD-LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            R+ ++SWNS+++G A +GY+ EA+++F+QM++  I PD  TFL VLSAC HAG + +G 
Sbjct: 777 RRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGR 836

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           + F LM N+  L+P R +H   +V +LGR GFLNEAE FIN +     P ++  LL AC+
Sbjct: 837 KVFDLMVNNYKLQP-RVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACR 895

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
            HG+     R+A ++++L P   + YVLLS++   ++ W  A  +R  M  +G++K PGY
Sbjct: 896 KHGDEVRGKRAADKLMELKPQSSSSYVLLSSIYAESENWSGAVSLRREMKLKGVKKLPGY 955

Query: 304 SWV 306
           SW+
Sbjct: 956 SWI 958



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 100/184 (54%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + V++S+  RN + WNA++ GF   G  ++ ++ FS M++ G   D FT 
Sbjct: 354 YAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTF 413

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI  A   +     G Q+H ++ K  + SN+FV N LV MYA  GA+ +A K F  M  
Sbjct: 414 TSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKI 473

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D VSWN++++G     Y+ EA  +F +M    + PD  +   ++SAC +   + +G Q 
Sbjct: 474 HDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQC 533

Query: 186 FYLM 189
             L+
Sbjct: 534 HCLL 537



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + +++ +   N ++WN +I+G    G  E+A+  F E+++ G+     ++ S++ AI 
Sbjct: 261 DARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIA 320

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
            +S    G  +HA   K G D NV+V + LV MYA C  ++ A +VF+S+ ER++V WN+
Sbjct: 321 SLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNA 380

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM-RND 192
           +L G A +G ++E ++ F  M++   +PD  TF  + SAC    +++ G Q   +M +N 
Sbjct: 381 MLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNK 440

Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEA 219
            +     A    A+V +  ++G L EA
Sbjct: 441 FASNLFVA---NALVDMYAKSGALKEA 464



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 5/293 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++  +  + +  +  ++  + +SWNAII G+      ++A   F  M   G+  D  ++
Sbjct: 455 YAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSL 514

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SIV A   +   K G+Q H L+ K+G D++    + L+ MY  CG +  A  VF SM  
Sbjct: 515 ASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPS 574

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++VS N+L+ G    G+  EA+ LF+++Q   +KP   TF  +L  C  A  ++ G Q 
Sbjct: 575 RNVVSVNALIAGYT-MGHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQI 633

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS--ACQ 243
              +     L        + +   +    F+ ++E+  + +    G  V+ AL+S  A Q
Sbjct: 634 HGQVMKWGFLSSSEMVCVSLLCLYMNSQRFV-DSETLFSELQYPKGLVVWTALISGYAQQ 692

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296
            H  + +      R  ++ P+  A   +L   +  +    +  +I +L+++ G
Sbjct: 693 NHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSL-QNGQEIHSLIFHTG 744



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 121/263 (46%), Gaps = 15/263 (5%)

Query: 6   YSRCDSSLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y +C  ++DF Q  +S +  ++  +WN++++ + + G     ++ F  M    +  + FT
Sbjct: 86  YVKC-GNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHEVRPNEFT 144

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
              ++ A   +     G+Q+H  +FK G+    F Q  L+ MYA C  + DA  VF    
Sbjct: 145 FAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGAL 204

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             D VSW +L+ G    G+  EAV++F++MQ+    PD  T + V++A    G +    +
Sbjct: 205 NLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRLADARK 264

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM-------SRNPGPSVYKA 237
            F  + N      P    +  ++    + GF  EA SF   +       +R+   SV  A
Sbjct: 265 LFTQIPN------PNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSA 318

Query: 238 LLSACQVHGNREIAVRSAKRVLD 260
           + S   ++    +  ++ K  LD
Sbjct: 319 IASLSMLNYGSMVHAQATKEGLD 341



 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 79/186 (42%), Gaps = 33/186 (17%)

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
           V+      K +H+   KIG      + N +V +Y  CG ++ A K FS ++++D+ +WNS
Sbjct: 53  VLQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNS 112

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-------------------- 173
           +L     HG     VQ F  M   E++P+  TF +VLSAC                    
Sbjct: 113 VLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTG 172

Query: 174 ------CHAGFIDKGLQYFYLMRNDASLEPPRAEH-----YTAIVGLLGRAGFLNEAESF 222
                 C  G ID   +  YL   DA L    A +     +TA++    R GF  EA   
Sbjct: 173 FGFRSFCQGGLIDMYAKCRYL--RDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKV 230

Query: 223 INSMSR 228
            + M R
Sbjct: 231 FDRMQR 236


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 166/301 (55%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C        V+  +  +N I W  ++ G    G   +AL+ F    ++G   D   +
Sbjct: 474 YVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARADAHVL 533

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           +SIVG +   +  ++G+Q+H    K    ++V   N +V MY  CG  ++A ++F  +  
Sbjct: 534 SSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFREIPA 593

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           R++VSW +++ G   HG  REAV +FE+M+   ++PD  T+L +LSAC HAG +D+  +Y
Sbjct: 594 RNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRY 653

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  +R D ++  P+AEHY  +V LLGRAG L EA   I +M   P   V++ LLSAC+VH
Sbjct: 654 FSCIRRDRTVR-PKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVH 712

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            +  +   +   +L +  ++P  YV LSNV      W +   +R  M  RG++K+ G SW
Sbjct: 713 KDVAVGREAGDVLLAIDGDNPVNYVTLSNVFAEAGAWRECHKVRDAMRRRGLKKQGGCSW 772

Query: 306 V 306
           V
Sbjct: 773 V 773



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 10/196 (5%)

Query: 3   ILTYSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDI 60
           I  Y++C   LD    V+  +R RN +SW A++ GF   G     L+   EMR A     
Sbjct: 259 IDMYAKC-GELDMAGEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAP 317

Query: 61  DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
           + +T+++ + A  V      G  +H L  + GY+ +  V + LV +Y+  G I DA +VF
Sbjct: 318 NEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVF 377

Query: 121 SSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQM------QKTEIKPDGTTFLVVLSAC 173
                 R L +WN+++ G AH G+ R+A+ +F +M       + + +PD  TF  +L AC
Sbjct: 378 DCAGLGRGLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKAC 437

Query: 174 CHAGFIDKGLQYFYLM 189
              G   +G Q    M
Sbjct: 438 GGLGAPREGAQVHAAM 453



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 9/181 (4%)

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I  ++ A    S  + G Q+H  + K+G+ S+  + N L+ MYA CG ++ A +VF  M 
Sbjct: 220 IADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMR 279

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSACCHAGFIDKGL 183
           +R++VSW +L++G   HG +   ++L  +M+  +E  P+  T    L ACC    +  G+
Sbjct: 280 DRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGV 339

Query: 184 QYFYLMRNDASLEPPRAEHY---TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
               L      +     EHY   +++V L  + G + +A    +      G + + A++S
Sbjct: 340 GIHGL-----CVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMIS 394

Query: 241 A 241
            
Sbjct: 395 G 395


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 175/303 (57%), Gaps = 5/303 (1%)

Query: 8   RCDSSLDF----QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
           +C  ++D      +V+  +  ++ +SW+++I G+ + G  ++AL  F +M   G   D +
Sbjct: 189 KCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCY 248

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
            +  ++ A   +   + G     L+ +  +  N  +   L+ MYA CG ++ A +VF  M
Sbjct: 249 AMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGM 308

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
            ++D+V WN+ + G A  G+ + A  LF QM+K+ I+PDG TF+ +L AC HAG +D+G 
Sbjct: 309 RKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGR 368

Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
           QYF  M    +L  P  EHY  +V LLGRAGFL+EA   + SM       V+ ALL  C+
Sbjct: 369 QYFNSMERVFTL-TPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCR 427

Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
           +H + ++     K+++ L P++   YVLLSN+  A+  W+DA  IR++M  RGI+K PGY
Sbjct: 428 LHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGY 487

Query: 304 SWV 306
           SW+
Sbjct: 488 SWI 490



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 118/274 (43%), Gaps = 41/274 (14%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
             ++   +  N   +N +I G     S +++++ +  MR+ G+  D FT   ++ A   +
Sbjct: 62  HRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARL 121

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS------------- 122
              K G ++H L+ K G +S+ FV   LV +Y  CG I++A KVF               
Sbjct: 122 LDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAII 181

Query: 123 -------------------------MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157
                                    M E+D+VSW+S++ G A +G  +EA+ LF +M   
Sbjct: 182 SGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNE 241

Query: 158 EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLN 217
             +PD    + VL AC   G ++ G     LM  +  L  P     TA++ +  + G ++
Sbjct: 242 GFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLG--TALIDMYAKCGRMD 299

Query: 218 EAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
            A      M R     V+ A +S   + G+ + A
Sbjct: 300 SAWEVFRGM-RKKDIVVWNAAISGLAMSGHVKAA 332



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 78/152 (51%), Gaps = 7/152 (4%)

Query: 72  IGVISGF---KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
           I +  GF   K  K +HA + ++G D + ++ N+++      G  N ++++F    E ++
Sbjct: 14  IRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNI 73

Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY-FY 187
             +N+++ G   +   +E+++++  M+K  + PD  TF  +L AC  A  +D  L    +
Sbjct: 74  FLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKAC--ARLLDSKLGIKLH 131

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
            +   A  E   A   T++V L G+ GF++ A
Sbjct: 132 GLVVKAGCESD-AFVNTSLVSLYGKCGFIDNA 162



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 2/168 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C        V+  +R ++ + WNA I+G    G  + A   F +M ++GI+ D 
Sbjct: 289 IDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDG 348

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T   ++ A        EG+Q    + ++      +     +V +    G +++A+++  
Sbjct: 349 NTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVK 408

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
           SM  E + + W +LL GC  H  ++    + +Q+   E    G   L+
Sbjct: 409 SMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLL 456


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 180/304 (59%), Gaps = 5/304 (1%)

Query: 6   YSRCDS-SLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C++ +L F+ V+S    +    WNAII+G  + G   +A++ F +M    +D +  T
Sbjct: 370 YAKCNNVNLSFR-VFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDAT 428

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM- 123
           + S++ A   ++  ++ + MH  + + G+ S + V   L+ +Y+ CG++  A+ +F+ + 
Sbjct: 429 LNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIP 488

Query: 124 -DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             ++D+++W++++ G   HG+   A+ LF+QM ++ +KP+  TF  +L AC HAG +D+G
Sbjct: 489 KKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEG 548

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L  F  M  D  +   R +HYT ++ LLGRAG L EA   I +M+  P  +V+ ALL +C
Sbjct: 549 LGLFKFMLEDNQMSL-RTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSC 607

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            +H N E+   +AK + +L P +   YVLL+N+  A   W DA  +R +M N G+RK P 
Sbjct: 608 VIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPA 667

Query: 303 YSWV 306
           +S +
Sbjct: 668 HSLI 671



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 136/279 (48%), Gaps = 9/279 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C      + V+  +R R  +SWN +I G+   G  ++AL  F  M   GI+ D  T+
Sbjct: 168 YMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATV 227

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++     +   + G+++HAL+       ++ V N L+ MYA CG +++A  +F  MD+
Sbjct: 228 VSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDK 287

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           RD+VSW +++ G   +G +R A+ L + MQ   +KP+  T   VLSAC     +  G   
Sbjct: 288 RDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCL 347

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSACQ 243
           + + +R     E       TA++ +  +   +N +   F  +  +   P  + A++S C 
Sbjct: 348 HGWAIRQKLESEVIVE---TALIDMYAKCNNVNLSFRVFSKTSKQRTAP--WNAIISGCI 402

Query: 244 VHGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKATD 280
            +G    A+   K++L   + PND  +  LL   +  TD
Sbjct: 403 HNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTD 441



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 3/214 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-IDYFTITSIVGAIGV 74
           + ++  +R  +  SWNA+I  + N G    AL  F +M  +G    D +T   ++ A G 
Sbjct: 76  RKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGD 135

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
               + G  +HA     G+DS+ FVQN L+ MY  CG +  A +VF  M ER LVSWN++
Sbjct: 136 YLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTM 195

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + G   +G  +EA+ +F+ M    I+PD  T + VL  C +   ++ G +   L+     
Sbjct: 196 INGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNL 255

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
            E      + +++ +  + G ++EA+     M +
Sbjct: 256 GEDISV--WNSLLDMYAKCGNMDEAQMIFYEMDK 287



 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFM---YAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           KQ+HA    +G  S+ +  + L  +   YA+ G    A K+F  +    L SWN+++   
Sbjct: 38  KQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAMIRMY 97

Query: 139 AHHGYSREAVQLFEQMQKTEIK-PDGTTFLVVLSAC 173
            + G S +A+ LF QM  +  + PD  T+  V+ AC
Sbjct: 98  TNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKAC 133


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 175/301 (58%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + ++  +++R+ ++W+A+I+G+       +AL  FSEM+ A ++ +  T+
Sbjct: 266 YAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTM 325

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A  V+   + GK +H+ + +        +   LV  YA CG I+DA + F SM  
Sbjct: 326 VSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPV 385

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++  +W +L+ G A +G  REA++LF  M++  I+P   TF+ VL AC H+  +++G ++
Sbjct: 386 KNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRH 445

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  ++ PR EHY  +V LLGRAG ++EA  FI +M   P   +++ALLS+C VH
Sbjct: 446 FDSMARDYGIK-PRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVH 504

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N  I   + K+++ L P+    YVLLSN+  +   W DA  +R  M +RGI K PG S 
Sbjct: 505 RNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSL 564

Query: 306 V 306
           +
Sbjct: 565 I 565



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 109/225 (48%), Gaps = 4/225 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+ C      + V+ +      + WNAI+A +   G   + ++ F  M + G+  D 
Sbjct: 162 IHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDE 221

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S+V A G I   K GK +   + + G   N  +   L+ MYA CG I  A ++F  
Sbjct: 222 VTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDG 281

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  RD+V+W++++ G       REA+ LF +MQ   ++P+  T + VLSAC   G ++ G
Sbjct: 282 MQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETG 341

Query: 183 -LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
              + Y+ R   SL        TA+V    + G +++A     SM
Sbjct: 342 KWVHSYVRRKRLSLTTILG---TALVDFYAKCGCIDDAVEAFESM 383



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 112/249 (44%), Gaps = 9/249 (3%)

Query: 30  WNAIIAGFCNLGSGEQALKCFSEMRQAG--IDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           +N ++  F + G  E AL  F EM  A      D  T    + +   +     G+ + A 
Sbjct: 86  YNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAY 145

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
             K G  ++ FV + L+ MYA CG +  A  VF + +E  +V WN+++     +G   E 
Sbjct: 146 AVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEV 205

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           V++F+ M +  +  D  T + V++AC   G  D  L  +     D        +  TA++
Sbjct: 206 VEMFKGMLEVGVAFDEVTLVSVVTACGRIG--DAKLGKWVAGHVDEEGLARNPKLVTALM 263

Query: 208 GLLGRAGFLNEAESFINSM-SRNPGPSVYKALLSA-CQVHGNRE-IAVRSAKRVLDLWPN 264
            +  + G + +A    + M SR+     + A++S   Q    RE + + S  ++  + PN
Sbjct: 264 DMYAKCGEIGKARRLFDGMQSRD--VVAWSAMISGYTQADQCREALGLFSEMQLARVEPN 321

Query: 265 DPAIYVLLS 273
           D  +  +LS
Sbjct: 322 DVTMVSVLS 330


>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 548

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 171/299 (57%), Gaps = 2/299 (0%)

Query: 8   RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
           R D+ L  ++++  +  RN  SWN +I+    +G    ++  F++MR      D  T+  
Sbjct: 218 RGDAGLA-RDLFDEMPQRNVNSWNMMISACSEVGLWADSVAVFNQMRFMSFRPDAATMAV 276

Query: 68  IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
           ++ A   +      +Q++ L+ K   + N  V N LV M+A CG  ++A+ +F+ MD +D
Sbjct: 277 LMSACAQLGFLSVARQVYGLLRKGCVEMNCHVHNSLVDMFAKCGCFSEAHLLFAEMDPKD 336

Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
           +VS+N ++   AHHG+ ++A++LFEQM +  ++PD  TFL VLSAC HAG +D G  YF 
Sbjct: 337 VVSYNVMVSALAHHGHGKDALKLFEQMIEGGLQPDAVTFLGVLSACAHAGLVDSGKYYFE 396

Query: 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGN 247
            M    ++E   A+HY  +V L GR G + EA  F+  M   P   ++ ALL+AC+ H N
Sbjct: 397 TMGTTYAIE-KSADHYACMVDLYGRVGLIEEAHYFVKIMPVKPHAGIWGALLNACRKHCN 455

Query: 248 REIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            ++   +A+ ++ + P +P  YVLLSN    +  WD  GD+R LM   GI K  G+SWV
Sbjct: 456 IDVGEVAARELIRIEPMNPGNYVLLSNTLAWSQQWDAVGDVRQLMRGNGIDKNTGFSWV 514



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 127/317 (40%), Gaps = 72/317 (22%)

Query: 30  WNAIIAGFCNLGS---GEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHA 86
           W A ++ +    S     +A   F  M ++G   + FT++S++ ++  +    +  Q+H 
Sbjct: 73  WTATVSSYAKHASPALAAEAFPLFMFMLRSGPRPNGFTVSSVLKSLSKLRAAHQVCQVHG 132

Query: 87  LIFKIG---------------------------YD----SNVFVQNRLVFMYAICGAIND 115
            + K G                           +D    SNV V N +V  Y   G +  
Sbjct: 133 FLVKAGLASSLHVGATLLDSYGNLCRVKDARRVFDEMPRSNVVVGNAMVSGYVKAGDVEA 192

Query: 116 ANKVFSSMDERDLVSWNSLLLG-------------------------------CAHHGYS 144
           A +VF  M ERD +SWN+L+ G                               C+  G  
Sbjct: 193 ARQVFDGMVERDSISWNTLMSGYLRRGDAGLARDLFDEMPQRNVNSWNMMISACSEVGLW 252

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
            ++V +F QM+    +PD  T  V++SAC   GF+    Q + L+R            + 
Sbjct: 253 ADSVAVFNQMRFMSFRPDAATMAVLMSACAQLGFLSVARQVYGLLRKGCV--EMNCHVHN 310

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSV-YKALLSACQVHGNREIAVRSAKRVLD--L 261
           ++V +  + G  +EA      M  +P   V Y  ++SA   HG+ + A++  +++++  L
Sbjct: 311 SLVDMFAKCGCFSEAHLLFAEM--DPKDVVSYNVMVSALAHHGHGKDALKLFEQMIEGGL 368

Query: 262 WPNDPAIYVLLSNVSKA 278
            P+      +LS  + A
Sbjct: 369 QPDAVTFLGVLSACAHA 385



 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/140 (20%), Positives = 63/140 (45%), Gaps = 6/140 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           +++C    +   +++ +  ++ +S+N +++   + G G+ ALK F +M + G+  D  T 
Sbjct: 316 FAKCGCFSEAHLLFAEMDPKDVVSYNVMVSALAHHGHGKDALKLFEQMIEGGLQPDAVTF 375

Query: 66  TSIVGA---IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             ++ A    G++   K   +     + I   ++ +    +V +Y   G I +A+     
Sbjct: 376 LGVLSACAHAGLVDSGKYYFETMGTTYAIEKSADHYAC--MVDLYGRVGLIEEAHYFVKI 433

Query: 123 MDERDLVS-WNSLLLGCAHH 141
           M  +     W +LL  C  H
Sbjct: 434 MPVKPHAGIWGALLNACRKH 453


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 169/304 (55%), Gaps = 1/304 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  YSR     D + ++  +  ++ + W+A+I+G+      ++AL  FSEM+  GI  D 
Sbjct: 21  ISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQ 80

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            TI S++ A   +      K +H  + K G    + V N L+ MYA CG +  A  VF  
Sbjct: 81  VTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEK 140

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  R+++SW S++   A HG +  A++ F QM+   IKP+G TF+ VL AC HAG +++G
Sbjct: 141 MQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEG 200

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            + F  M N+ ++  P+ EHY  +V L GRA  L +A   + +M   P   ++ +L++AC
Sbjct: 201 RRTFASMTNEHNI-TPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAAC 259

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
           Q+HG  E+   +AK+VL+L P+     V LSN+      W D G++R LM  RGI K+ G
Sbjct: 260 QIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMKQRGISKERG 319

Query: 303 YSWV 306
            S +
Sbjct: 320 CSRI 323



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 7/160 (4%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           N+ V   ++  Y+  G + DA  +F  M+E+DLV W++++ G A     +EA+ LF +MQ
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQ 72

Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214
              IKPD  T L V+SAC   G +D+    + Y+ +N      P      A++ +  + G
Sbjct: 73  VFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVN---NALIDMYAKCG 129

Query: 215 FLNEAESFINSM-SRNPGPSVYKALLSACQVHGNREIAVR 253
            L  A      M SRN     + ++++A  +HG+   A++
Sbjct: 130 NLGAARGVFEKMQSRNVIS--WTSMINAFAIHGDASNALK 167


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 104/308 (33%), Positives = 177/308 (57%), Gaps = 3/308 (0%)

Query: 1   LQILT-YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID 59
           L +L+ Y  C      Q ++ ++  ++ +SWN +I G+   G  ++AL  F +M   GI 
Sbjct: 535 LSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQ 594

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           +   ++  + GA  ++   + G++ HA   K   + + F+   L+ MYA  G+I  ++KV
Sbjct: 595 LCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKV 654

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F+ + E+   SWN++++G   HG ++EA++LFE+MQ+T   PD  TFL VL+AC H+G I
Sbjct: 655 FNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLI 714

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFI-NSMSRNPGPSVYKAL 238
            +GL+Y   M++   L+ P  +HY  ++ +LGRAG L++A   +   MS      ++K+L
Sbjct: 715 HEGLRYLDQMKSSFGLK-PNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 773

Query: 239 LSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
           LS+C++H N E+  + A ++ +L P  P  YVLLSN+      W+D   +R  M    +R
Sbjct: 774 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 833

Query: 299 KKPGYSWV 306
           K  G SW+
Sbjct: 834 KDAGCSWI 841



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 5/176 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           I  Y+ C S  D + V+ ++R++N   WNA+I+ +      ++ L+ F EM     +  D
Sbjct: 127 ITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPD 186

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           +FT   ++ A   +S    G  +H L+ K G   +VFV N LV  Y   G + DA ++F 
Sbjct: 187 HFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFD 246

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE----IKPDGTTFLVVLSAC 173
            M ER+LVSWNS++   + +G+S E+  L  +M +        PD  T + VL  C
Sbjct: 247 IMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVC 302



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 124/256 (48%), Gaps = 13/256 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           + +Y++C S    Q V+  +R++   SWNA+I G         +L    +M+ +G+  D 
Sbjct: 437 VASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDS 496

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ A   +   + GK++H  I +   + ++FV   ++ +Y  CG +     +F +
Sbjct: 497 FTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDA 556

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+++ LVSWN+++ G   +G+   A+ +F QM    I+  G + + V  AC     +  G
Sbjct: 557 MEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG 616

Query: 183 LQYF-----YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
            +       +L+ +DA +         +++ +  + G + ++    N +      S + A
Sbjct: 617 REAHAYALKHLLEDDAFIA-------CSLIDMYAKNGSITQSSKVFNGLKEKSTAS-WNA 668

Query: 238 LLSACQVHGNREIAVR 253
           ++    +HG  + A++
Sbjct: 669 MIMGYGIHGLAKEAIK 684



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 3/189 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYF 63
           YS+C    + Q ++     +N +SWN ++ GF   G          +M   G D+  D  
Sbjct: 337 YSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEV 396

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           TI + V      S     K++H    K  +  N  V N  V  YA CG+++ A +VF  +
Sbjct: 397 TILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGI 456

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             + + SWN+L+ G A     R ++    QM+ + + PD  T   +LSAC     +  G 
Sbjct: 457 RSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGK 516

Query: 184 Q-YFYLMRN 191
           + + +++RN
Sbjct: 517 EVHGFIIRN 525



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 6/172 (3%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT-ITSIVGAI 72
           D   ++  +  RN +SWN++I  F + G  E++     EM +   D  +   + ++V  +
Sbjct: 240 DALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVL 299

Query: 73  GVISGFKE---GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
            V +  +E   GK +H    K+  D  + + N L+ MY+ CG I +A  +F   + +++V
Sbjct: 300 PVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVV 359

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLSACCHAGFI 179
           SWN+++ G +  G +     +  QM     ++K D  T L  +  C H  F+
Sbjct: 360 SWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL 411



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 94/203 (46%), Gaps = 14/203 (6%)

Query: 34  IAGFCNLGSGEQALKCFSEMRQAGIDID----YFTITSIVGAIGVISGFKE----GKQMH 85
           I+ FC  G  +++ +   E    G D      +  +   +G +   SG ++    G+++H
Sbjct: 50  ISNFCETGDLDKSFRTVQEF--VGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIH 107

Query: 86  ALIF-KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
            L+       ++  +  R++ MYA+CG+ +D+  VF ++  ++L  WN+++   + +   
Sbjct: 108 QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELY 167

Query: 145 REAVQLF-EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY 203
            E ++ F E +  T++ PD  T+  V+ AC     +  GL    L+     +E     + 
Sbjct: 168 DEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGN- 226

Query: 204 TAIVGLLGRAGFLNEAESFINSM 226
            A+V   G  GF+ +A    + M
Sbjct: 227 -ALVSFYGTHGFVTDALQLFDIM 248


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 172/301 (57%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C      + ++  +  R+ ++W+A+I+G+       +AL  F EM++A ID +  T+
Sbjct: 270 YAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITM 329

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            SI+ +  V+   + GK +H  I K      V +   L+  YA CG++  + +VF  M  
Sbjct: 330 VSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPV 389

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++++SW  L+ G A +G  ++A++ F  M +  ++P+  TF+ VLSAC HAG +D+G   
Sbjct: 390 KNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDL 449

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M  D  +E PR EHY  +V +LGRAG + EA  FI +M   P   +++ LL++C+VH
Sbjct: 450 FVSMSRDFGIE-PRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVH 508

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            N EI   S K+++ L P     Y+LLSN+  +   W+DA  +R  M  +GI+K PG S 
Sbjct: 509 KNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSL 568

Query: 306 V 306
           +
Sbjct: 569 I 569



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 139/281 (49%), Gaps = 11/281 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+ C      + V+  +  RN  +WN++ AG+   G+ E+ +K F EM +  I  D 
Sbjct: 166 IHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDE 225

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T+ S++ A G ++  + G+ ++  + + G   N  +   LV MYA CG ++ A ++F  
Sbjct: 226 VTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQ 285

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           MD RD+V+W++++ G +     REA+ LF +MQK  I P+  T + +LS+C   G ++ G
Sbjct: 286 MDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETG 345

Query: 183 -LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALL 239
              +F++ +    L        TA++    + G     ES I    + P  +V  +  L+
Sbjct: 346 KWVHFFIKKKRMKLTVTLG---TALMDFYAKCG---SVESSIEVFGKMPVKNVLSWTVLI 399

Query: 240 SACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
                +G  + A+     +L+  + PND     +LS  S A
Sbjct: 400 QGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHA 440



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 111/219 (50%), Gaps = 3/219 (1%)

Query: 11  SSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIV 69
           +S+D+  +++  +   +  ++N +I GF    S  +A+  F EM +  +  D FT   I+
Sbjct: 72  TSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCIL 131

Query: 70  GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
                +    EG+Q+HALI K G+ S+ FV+N L+ MYA CG +  A +VF  M ER++ 
Sbjct: 132 KVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVR 191

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
           +WNS+  G    G   E V+LF +M + +I+ D  T + VL+AC     ++ G      +
Sbjct: 192 TWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYV 251

Query: 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
                   P     T++V +  + G ++ A    + M R
Sbjct: 252 EEKGLKGNPTL--ITSLVDMYAKCGQVDTARRLFDQMDR 288


>gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa]
 gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 171/301 (56%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC    +    ++ +  ++ I+WN +IAG+    S E     FS+M   G   + FT 
Sbjct: 259 YCRCGCLSEANKYFNDMTEKDLITWNTLIAGYERSDSIEPFF-IFSQMESEGFSPNCFTF 317

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS+V A    +  + G+Q+H  IF+ G D N+ + N L+ MYA CG I D+ K FS M  
Sbjct: 318 TSLVAACANAAALQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMSC 377

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            +LVSW S+++G   HGY +EAV+LF++M ++ I+PD   F+ VL AC HAG +D+GL+Y
Sbjct: 378 TNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAGLVDQGLRY 437

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
              M ND  ++P + E Y  +V LLGR G + +A   I SM      SV+ ALL AC+ H
Sbjct: 438 INCMINDYHIKPNQ-EIYGCVVDLLGRPGRVEDAYQLIRSMPFMADESVWGALLGACKAH 496

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
               +   +AK+ L L PN    YV+LSN+  A   W +A  +R LM   G RK  G SW
Sbjct: 497 NFSRLGKLAAKKALALRPNMVETYVMLSNIYAAEGKWGEAARMRKLMKRAGCRKVAGRSW 556

Query: 306 V 306
           +
Sbjct: 557 I 557



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 130/274 (47%), Gaps = 34/274 (12%)

Query: 6   YSRCDSSL-DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y+ C   + D   V+  ++ +N +SW  +IAG+ + G+G +AL+ F EM   G+ ++  +
Sbjct: 157 YASCGVGMRDACVVFHDIKEKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPHS 216

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I+  V A   I     G+Q+H  + K G++S++ V N ++ MY  CG +++ANK F+ M 
Sbjct: 217 ISIAVRACASIGSQNFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMT 276

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC----------- 173
           E+DL++WN+L+ G      S E   +F QM+     P+  TF  +++AC           
Sbjct: 277 EKDLITWNTLIAG-YERSDSIEPFFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQ 335

Query: 174 CHAGFIDKGL------------------QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF 215
            H G   +GL                        +N + +       +T+++   G  G+
Sbjct: 336 VHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGY 395

Query: 216 LNEAESFINSMSRN---PGPSVYKALLSACQVHG 246
             EA    + M R+   P   V+ A+L AC   G
Sbjct: 396 GKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAG 429



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 111/217 (51%), Gaps = 7/217 (3%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-IDYFTITSIVGAIGV 74
           +N++  +  R+ ++W  +I+G+ +     QA   F +M + G D  + FTI+S++ A   
Sbjct: 64  RNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKNGNDPPNAFTISSVLKACKG 123

Query: 75  ISGFKEGKQMHALIFKIGY-DSNVFVQNRLVFMYAICG-AINDANKVFSSMDERDLVSWN 132
           +     G+ +H L  K  + +  ++V N L+ MYA CG  + DA  VF  + E+++VSW 
Sbjct: 124 MKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGMRDACVVFHDIKEKNVVSWT 183

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN 191
           +L+ G  H G    A+Q+F +M    +  +  +  + + AC   G  + G Q +  ++++
Sbjct: 184 TLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISIAVRACASIGSQNFGRQIHTAVIKH 243

Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
               + P      +I+ +  R G L+EA  + N M+ 
Sbjct: 244 GFESDLPVT---NSILDMYCRCGCLSEANKYFNDMTE 277



 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT-EIKPDGTTFLVV 169
           G  + A  +F  M ERD+V+W +++ G  H     +A  +F  M K     P+  T   V
Sbjct: 58  GLTSQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKNGNDPPNAFTISSV 117

Query: 170 LSAC 173
           L AC
Sbjct: 118 LKAC 121


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 171/307 (55%), Gaps = 2/307 (0%)

Query: 1   LQILT-YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID 59
           L +L+ Y  C      Q ++ ++   + +SWN +I G    G  E+AL  F +M   GI 
Sbjct: 519 LSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQ 578

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
               ++ ++ GA  ++   + G++ HA   K   + N F+   ++ MYA  GAI  ++KV
Sbjct: 579 PCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKV 638

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F+ + E+   SWN++++G   HG ++EA++LFE+MQ+T   PD  TFL VL+AC H+G +
Sbjct: 639 FNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLL 698

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
            +GL+Y   M++   L+ P  +HY  ++ +LGRAG L+ A      MS  P   ++ +LL
Sbjct: 699 HEGLRYLDQMKSSFGLK-PNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLL 757

Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299
           S C++H N E+  + A ++  L P  P  YVLLSN+      WDD   +R  M    +RK
Sbjct: 758 SWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRK 817

Query: 300 KPGYSWV 306
             G SW+
Sbjct: 818 DAGCSWI 824



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 125/252 (49%), Gaps = 5/252 (1%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           + +Y++C S    Q V+  +R++   SWNA+I G+        +L    +M+ +G+  D 
Sbjct: 421 VASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDN 480

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ A   +   + GK++H  I +   + ++FV   ++ +Y  CG +     +F +
Sbjct: 481 FTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDA 540

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M++  LVSWN+++ G   +G+   A+ LF QM    I+P G + + V  AC     +  G
Sbjct: 541 MEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLG 600

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            + + Y +++   L    A    +I+ +  + G + ++    N +      S + A++  
Sbjct: 601 REAHAYALKH---LLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAAS-WNAMIMG 656

Query: 242 CQVHGNREIAVR 253
             +HG  + A++
Sbjct: 657 YGMHGRAKEAIK 668



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 13/172 (7%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           I  Y+ C S  D ++ + ++R++N   WNA+I+ +       + L+ F +M  +  +  D
Sbjct: 127 ITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPD 186

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            FT   ++ A   IS    G  +H L+ K G   ++FV N LV  Y   G ++DA K+F 
Sbjct: 187 NFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFD 246

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
            M ER+LVSWNS++   + +G                  PD  T + VL  C
Sbjct: 247 IMPERNLVSWNSMIRVFSDNG------------DDGAFMPDVATVVTVLPVC 286



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 3/189 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYF 63
           YS+    +D Q ++     +N +SWN ++ GF   G          +M     D+  D  
Sbjct: 321 YSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEV 380

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           TI + V      S     K++H    K  +  +  + N  V  YA CG+++ A +VF  +
Sbjct: 381 TILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGI 440

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             + L SWN+L+ G A     R ++    QM+ + + PD  T   +LSAC     +  G 
Sbjct: 441 RSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGK 500

Query: 184 Q-YFYLMRN 191
           + + +++RN
Sbjct: 501 EVHGFIIRN 509



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 109/232 (46%), Gaps = 15/232 (6%)

Query: 7   SRCDSSLDFQNVYSSVRTRNQISWNAI---IAGFCNLGSGEQALKCFSEMR---QAGIDI 60
           SR +SS    +  S+  + N  + N     I+ FC  G  +++ +   E     ++  D+
Sbjct: 20  SRKESSFPRADYNSNAISSNSTNANHFLRRISNFCETGDLDKSFRVVQEFAGDDESSSDV 79

Query: 61  DYFTITSIVGAIGVISGFKE----GKQMHALIF-KIGYDSNVFVQNRLVFMYAICGAIND 115
            +  +   +G +   SG ++    G+++H L+       S+  +  R++ MYA+CG+ +D
Sbjct: 80  -FLLVREALGLLLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDD 138

Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACC 174
           +   F ++  ++L  WN+++   + +    E +++F +M  KT + PD  TF  V+ AC 
Sbjct: 139 SRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACA 198

Query: 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
               +  GL    L+     +E     +  A+V   G  GF+++A    + M
Sbjct: 199 GISDVGIGLAVHGLVVKTGLVEDLFVGN--ALVSFYGTHGFVSDALKLFDIM 248



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 14/162 (8%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D   ++  +  RN +SWN++I  F + G     +             D  T+ +++    
Sbjct: 240 DALKLFDIMPERNLVSWNSMIRVFSDNGDDGAFMP------------DVATVVTVLPVCA 287

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
                  GK +H    K+  D  + V N L+ MY+  G I D+  +F   + +++VSWN+
Sbjct: 288 REREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNT 347

Query: 134 LLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSAC 173
           ++ G +  G       L  QM     ++K D  T L  +  C
Sbjct: 348 MVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVC 389


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 104/308 (33%), Positives = 177/308 (57%), Gaps = 3/308 (0%)

Query: 1   LQILT-YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID 59
           L +L+ Y  C      Q ++ ++  ++ +SWN +I G+   G  ++AL  F +M   GI 
Sbjct: 285 LSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQ 344

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
           +   ++  + GA  ++   + G++ HA   K   + + F+   L+ MYA  G+I  ++KV
Sbjct: 345 LCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKV 404

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F+ + E+   SWN++++G   HG ++EA++LFE+MQ+T   PD  TFL VL+AC H+G I
Sbjct: 405 FNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLI 464

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFI-NSMSRNPGPSVYKAL 238
            +GL+Y   M++   L+ P  +HY  ++ +LGRAG L++A   +   MS      ++K+L
Sbjct: 465 HEGLRYLDQMKSSFGLK-PNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 523

Query: 239 LSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
           LS+C++H N E+  + A ++ +L P  P  YVLLSN+      W+D   +R  M    +R
Sbjct: 524 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 583

Query: 299 KKPGYSWV 306
           K  G SW+
Sbjct: 584 KDAGCSWI 591



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 124/256 (48%), Gaps = 13/256 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           + +Y++C S    Q V+  +R++   SWNA+I G         +L    +M+ +G+  D 
Sbjct: 187 VASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDS 246

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           FT+ S++ A   +   + GK++H  I +   + ++FV   ++ +Y  CG +     +F +
Sbjct: 247 FTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDA 306

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M+++ LVSWN+++ G   +G+   A+ +F QM    I+  G + + V  AC     +  G
Sbjct: 307 MEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG 366

Query: 183 LQYF-----YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
            +       +L+ +DA +         +++ +  + G + ++    N +      S + A
Sbjct: 367 REAHAYALKHLLEDDAFIA-------CSLIDMYAKNGSITQSSKVFNGLKEKSTAS-WNA 418

Query: 238 LLSACQVHGNREIAVR 253
           ++    +HG  + A++
Sbjct: 419 MIMGYGIHGLAKEAIK 434



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 3/189 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYF 63
           YS+C    + Q ++     +N +SWN ++ GF   G          +M   G D+  D  
Sbjct: 87  YSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEV 146

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           TI + V      S     K++H    K  +  N  V N  V  YA CG+++ A +VF  +
Sbjct: 147 TILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGI 206

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             + + SWN+L+ G A     R ++    QM+ + + PD  T   +LSAC     +  G 
Sbjct: 207 RSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGK 266

Query: 184 Q-YFYLMRN 191
           + + +++RN
Sbjct: 267 EVHGFIIRN 275



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 6/161 (3%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT-ITSIVGAIGVISGFKE--- 80
           RN +SWN++I  F + G  E++     EM +   D  +   + ++V  + V +  +E   
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           GK +H    K+  D  + + N L+ MY+ CG I +A  +F   + +++VSWN+++ G + 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 141 HGYSREAVQLFEQMQK--TEIKPDGTTFLVVLSACCHAGFI 179
            G +     +  QM     ++K D  T L  +  C H  F+
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL 161


>gi|2245003|emb|CAB10423.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268397|emb|CAB78689.1| hypothetical protein [Arabidopsis thaliana]
          Length = 459

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 102/279 (36%), Positives = 163/279 (58%), Gaps = 1/279 (0%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           I WNA+I+G+   G  ++ L  + +MRQ  I  D +T  S+  A   +   + GK+ HA+
Sbjct: 133 IPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHGKRAHAV 192

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           + K    SN+ V + LV MY  C + +D ++VF  +  R++++W SL+ G  +HG   E 
Sbjct: 193 MIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEV 252

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           ++ FE+M++   +P+  TFLVVL+AC H G +DKG ++FY M+ D  +E P  +HY A+V
Sbjct: 253 LKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHFYSMKRDYGIE-PEGQHYAAMV 311

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267
             LGRAG L EA  F+        P V+ +LL AC++HGN ++   +A + L+L P +  
Sbjct: 312 DTLGRAGRLQEAYEFVMKSPCKEHPPVWGSLLGACRIHGNVKLLELAATKFLELDPTNGG 371

Query: 268 IYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            YV+ +N   +    + A  +R  M N G++K PGYS +
Sbjct: 372 NYVVFANGYASCGLREAASKVRRKMENAGVKKDPGYSQI 410



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 72/158 (45%), Gaps = 19/158 (12%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R     +  + G C  G  ++A+     +  +G+ ++  T   ++        + +GK++
Sbjct: 48  RKTEKLDKTLKGLCVTGRLKEAVGL---LWSSGLQVEPETYAVLLQECKQRKEYTKGKRI 104

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA +F +G+  N +++ +L+ +YA+                 DL+ WN+++ G    G  
Sbjct: 105 HAQMFVVGFALNEYLKVKLLILYALS----------------DLIPWNAMISGYVQKGLE 148

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +E + ++  M++  I PD  TF  V  AC     ++ G
Sbjct: 149 QEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHG 186



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 6/141 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D   V+  + TRN I+W ++I+G+   G   + LKCF +M++ G   +  T 
Sbjct: 212 YFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTF 271

Query: 66  TSIVGAI---GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK-VFS 121
             ++ A    G++   K  +  +++    G +        +V      G + +A + V  
Sbjct: 272 LVVLTACNHGGLVD--KGWEHFYSMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEFVMK 329

Query: 122 SMDERDLVSWNSLLLGCAHHG 142
           S  +     W SLL  C  HG
Sbjct: 330 SPCKEHPPVWGSLLGACRIHG 350


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 165/302 (54%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-IDYFT 64
           + +C+     + ++  +  RN +SW A+I G+         L+ F EMR  G D     T
Sbjct: 179 FIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVIT 238

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I +++     I  F  G  +H  + K   D +V V N L+ MYA  GA+  A K+F  M 
Sbjct: 239 IVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMP 298

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +RD+ SW +++ G A HG    A++ F  M K+ + P+  T L VLSAC HAG + +G  
Sbjct: 299 KRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRS 358

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M     ++P + +HY  +V LLGRAG L EA+  I  M   P   ++++LLSAC V
Sbjct: 359 LFQKMVQCHGIKP-KIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLV 417

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN  +A  + K +++L P+D  +Y+LL N+  +   W+DA   R  M +R ++KKPG S
Sbjct: 418 HGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCS 477

Query: 305 WV 306
           WV
Sbjct: 478 WV 479



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 142/332 (42%), Gaps = 41/332 (12%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           TY++  S +D Q V++ ++  + +SW  +I+ + +     +A   FS +  +G+  D F 
Sbjct: 46  TYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFC 105

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           +   V A G       G+ +H ++F+    S+  V N L+ MY+  GAI  A  VF +M+
Sbjct: 106 VVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTME 165

Query: 125 ERDLVSWNSLLLGCAH--------------------------HGYSREAV-----QLFEQ 153
            +D+ SW SLL G                              GY +  V     +LF++
Sbjct: 166 IKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQE 225

Query: 154 MQKTEIK--PDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLL 210
           M + E K  P   T + VLS C   G  D G   + Y+ + +  L+        A++ + 
Sbjct: 226 M-RAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLD---VTVNNALMDMY 281

Query: 211 GRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAI 268
            ++G L  A      M +    S +  ++S   +HG    A+ +   +    + PN+  +
Sbjct: 282 AKSGALVLALKIFQEMPKRDVFS-WTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTL 340

Query: 269 YVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
             +LS  S A    +     + ++   GI+ K
Sbjct: 341 LSVLSACSHAGLVVEGRSLFQKMVQCHGIKPK 372



 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 6/148 (4%)

Query: 82  KQMHALIFKIGY--DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           KQ+H     +G        +  +L+  Y   G+  DA KVF+ +   D+VSW  L+    
Sbjct: 20  KQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYL 79

Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQYFYLMRNDASLEPP 198
           H     +A  +F  +  + ++PD    +  +SAC H   +  G + +  + R +   +P 
Sbjct: 80  HTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPI 139

Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSM 226
                 A++ +  R+G +  A S   +M
Sbjct: 140 VG---NALIDMYSRSGAIEVACSVFKTM 164


>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 499

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 107/291 (36%), Positives = 169/291 (58%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  ++ +SW A+++G+       +AL+ F EM  AGI  D  TI S++ A   +
Sbjct: 208 RQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVISACTNL 267

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G  +H+ I + G+   V + N L+ MYA CG ++ A +VF++M  + L++WNS++
Sbjct: 268 GDVETGMNVHSYINENGFGWMVSLCNALINMYAKCGCVDRAWRVFNNMKRKSLITWNSMI 327

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
             CA+HGY+ +A +LF  M  + I PDG TFL +L A  H G +D+G + F +M  D  +
Sbjct: 328 SACANHGYAEDAFELFSCMLNSGIAPDGITFLALLIAYTHKGLVDEGYRLFQIMERDYGI 387

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           E    EHY  IV +LGRAG L EA   I +M       V+ ALL+AC+++G+  +  R  
Sbjct: 388 E-ASIEHYGCIVDMLGRAGRLEEAYELIVTMPIPSNDIVWGALLAACRIYGDVNMGERVV 446

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           K++L+L P++   Y+LL ++  A+    +A  IR  M   G  K PGYSWV
Sbjct: 447 KKLLELKPDEGGYYILLRDIYVASGRTAEANHIRQAMQESGAMKNPGYSWV 497



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 127/274 (46%), Gaps = 42/274 (15%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA---I 72
           Q ++  +   N   +N II G+    S    +  F++MRQ  +D D FT   ++ A   +
Sbjct: 70  QRLFDQMPQPNTFFYNTIIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARSRV 129

Query: 73  GVISGFK---EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA----------------- 112
             +  F    E  ++H  +FK G+ S++FVQN L+ +YA+ G+                 
Sbjct: 130 HKVHNFPSTLECDEIHGAVFKYGFCSHLFVQNALINLYAVKGSPAAAWRVFNETVGVDVV 189

Query: 113 --------------INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
                         +  A +VF  M E+D+VSW +++ G +    SREA++LF +M    
Sbjct: 190 SWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAG 249

Query: 159 IKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLN 217
           I+PD  T + V+SAC + G ++ G+  + Y+  N             A++ +  + G ++
Sbjct: 250 IRPDEVTIVSVISACTNLGDVETGMNVHSYINENGFGW---MVSLCNALINMYAKCGCVD 306

Query: 218 EAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
            A    N+M R      + +++SAC  HG  E A
Sbjct: 307 RAWRVFNNMKRK-SLITWNSMISACANHGYAEDA 339



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 86/173 (49%), Gaps = 10/173 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C        V+++++ ++ I+WN++I+   N G  E A + FS M  +GI  D 
Sbjct: 296 INMYAKCGCVDRAWRVFNNMKRKSLITWNSMISACANHGYAEDAFELFSCMLNSGIAPDG 355

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            T  +++ A        EG ++  ++ +  G ++++     +V M    G + +A ++  
Sbjct: 356 ITFLALLIAYTHKGLVDEGYRLFQIMERDYGIEASIEHYGCIVDMLGRAGRLEEAYELIV 415

Query: 122 SM--DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT--EIKPDGTTFLVVL 170
           +M     D+V W +LL  C  +G     V + E++ K   E+KPD   + ++L
Sbjct: 416 TMPIPSNDIV-WGALLAACRIYG----DVNMGERVVKKLLELKPDEGGYYILL 463


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 108/292 (36%), Positives = 161/292 (55%), Gaps = 2/292 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFTITSIVGAIGV 74
           + ++  +  RN  SWNA+I G+   G   + L  F  M   G  + +  T+ +++ A   
Sbjct: 199 ERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACAR 258

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +     GK +H      GY  NV+V+N L+ MYA CG +  A  VF SMD +DL+SWN++
Sbjct: 259 LGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTI 318

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + G A HG+  +A+ LF  M+     PDG TF+ +L AC H G ++ G  YF  M +D S
Sbjct: 319 IGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYS 378

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           +  PR EHY  IV LLGRAG L  A  FI  M       ++ ALL AC+V+ N E+A  +
Sbjct: 379 I-VPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELA 437

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            +++++  P +PA YV+LSN+      W D   ++  M + G +K PG S +
Sbjct: 438 LEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGFKKLPGCSLI 489



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 66/122 (54%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
             V+  +   N   WNA+  G+    S +  +  F +M+   +  + FT   I+ +   I
Sbjct: 5   HKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKI 64

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  KEG+++H  + K G+ +N FV   L+ MYA  GAI+ A +VF  M ER++++W +++
Sbjct: 65  NALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMI 124

Query: 136 LG 137
            G
Sbjct: 125 NG 126



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 19/171 (11%)

Query: 18  VYSSVRTRNQISWNAIIAGF---CNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           V+  +  RN I+W A+I G+   C+L +  +      E               IV    +
Sbjct: 108 VFGEMIERNVIAWTAMINGYITCCDLVTARRLFDLAPE-------------RDIVLWNTM 154

Query: 75  ISGFKEGKQM--HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
           ISG+ E K +     +F    + +V   N ++  YA  G +    ++F  M ER++ SWN
Sbjct: 155 ISGYIEAKDVIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWN 214

Query: 133 SLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +L+ G   +G   E +  F++M     + P+  T + VLSAC   G +D G
Sbjct: 215 ALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLG 265



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 87/186 (46%), Gaps = 7/186 (3%)

Query: 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
           + +A+KVF  + E +   WN++  G + +   ++ + LF QM+  ++ P+  TF V+L +
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 173 CCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM-SRN- 229
           C     + +G + + +++++     P  A   T ++ +    G ++ A      M  RN 
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVA---TTLIDMYASGGAIHAAYRVFGEMIERNV 117

Query: 230 -PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDI 288
               ++    ++ C +   R +   + +R + LW    + Y+   +V +A + +D   + 
Sbjct: 118 IAWTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNK 177

Query: 289 RTLMYN 294
             + +N
Sbjct: 178 DVMSWN 183



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 16/174 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C       +V+ S+  ++ ISWN II G    G G  AL  FS M+ AG + D  T 
Sbjct: 291 YAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITF 350

Query: 66  TSIVGA---IGVIS-GFKEGKQM---HALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
             I+ A   +G++  GF   K M   ++++ +I +         +V +    G +  A  
Sbjct: 351 IGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEH------YGCIVDLLGRAGLLAHAVD 404

Query: 119 VFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
               M  E D V W +LL  C  +     A    E++   E +P      V+LS
Sbjct: 405 FIRKMPIEADAVIWAALLGACRVYKNVELAELALEKL--IEFEPKNPANYVMLS 456


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 172/302 (56%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C   LD  + ++  +  +++++WN++I+ F   G  ++AL  F +M   GI  +  T
Sbjct: 489 YAKC-GRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNIT 547

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           I++ + A   +     GK++H +  K    +++F ++ L+ MYA CG +  A +VF  M 
Sbjct: 548 ISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMP 607

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +++ VSWNS++     HG  +E+V L   MQ+   KPD  TFL ++SAC HAG +++G+Q
Sbjct: 608 DKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQ 667

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M     L  PR EH+  +V L  R+G L++A  FI  M   P   ++ ALL AC+V
Sbjct: 668 LFQCM-TKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRV 726

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N E+A  +++ +  L P +   YVL+SN++     WD    +R LM +  I K PGYS
Sbjct: 727 HRNVELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYS 786

Query: 305 WV 306
           WV
Sbjct: 787 WV 788



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 94/177 (53%), Gaps = 1/177 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++ +  +  R+ + WN ++ G    G  + A++ F  MR +G + ++ T+   +      
Sbjct: 196 RDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATD 255

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +    G Q+H+L  K G +  V V N L+ MYA C  ++DA ++F  M + DLV+WN ++
Sbjct: 256 ADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMI 315

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRN 191
            GC  +G   EA  LF  MQ++  +PD  T + +L A      + +G + + Y++RN
Sbjct: 316 SGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRN 372



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 127/288 (44%), Gaps = 48/288 (16%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      QN+Y + R  + +  + +I+G+   G  E+AL+ F  + +  I  +  TI
Sbjct: 388 YFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTI 447

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++     ++    G+Q+H  + +  Y+   +V++ L+ MYA CG ++ ++ +F  M +
Sbjct: 448 ASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQ 507

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC------------ 173
           +D V+WNS++   + +G  +EA+ LF QM    IK +  T    LSAC            
Sbjct: 508 KDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEI 567

Query: 174 -----------------------CHAGFIDKGLQYFYLM--RNDASLEPPRAEHYTAIVG 208
                                     G ++  L+ F  M  +N+ S        + +I+ 
Sbjct: 568 HGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVS--------WNSIIS 619

Query: 209 LLGRAGFLNEAESFINSMSR---NPGPSVYKALLSACQVHGNREIAVR 253
             G  G + E+ S ++ M      P    + AL+SAC   G  E  V+
Sbjct: 620 AYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQ 667



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 99/187 (52%), Gaps = 1/187 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C    D   ++  +   + ++WN +I+G    G   +A   F +M+++G   D  T+
Sbjct: 287 YAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITL 346

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A+  ++G K+GK++H  I +   + +VF+ + LV +Y  C  +  A  ++ +   
Sbjct: 347 VSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARA 406

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
            D+V  ++++ G   +G S EA+Q+F  + +  IKP+  T   VL  C     +  G Q 
Sbjct: 407 IDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQI 466

Query: 185 YFYLMRN 191
           + Y++RN
Sbjct: 467 HGYVLRN 473



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 5/223 (2%)

Query: 26  NQISWNAIIAGFCNLGSGEQALKCFSEM--RQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           + + WN +I GF   G    A+  + +M    A    D  T+  +V +   +     G+ 
Sbjct: 103 SSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRL 162

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +H     IG  ++V+V + LV MYA  G + +A   F  + ERD V WN ++ GC   G 
Sbjct: 163 VHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGD 222

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY 203
              AV+LF  M+ +  +P+  T    LS C     +  G Q  + +     LEP  A   
Sbjct: 223 VDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQ-LHSLAVKCGLEPEVAVAN 281

Query: 204 TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
           T ++ +  +   L++A      M ++     +  ++S C  +G
Sbjct: 282 T-LLAMYAKCQCLDDAWRLFELMPQD-DLVTWNGMISGCVQNG 322


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 179/309 (57%), Gaps = 9/309 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFT 64
           Y  C      + V+  +  R    WNA+I+G+   G  E+AL  F EM + AG+  +  T
Sbjct: 260 YCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTT 319

Query: 65  ITSIVGA-IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           + S++ A +  ++   +GK++HA   +    S++ V + LV MYA CG +N + +VF+ M
Sbjct: 320 MASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEM 379

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQM-----QKTEIKPDGTTFLVVLSACCHAGF 178
             +++++WN L++ C  HG   EA++LF+ M     +  E KP+  TF+ V +AC H+G 
Sbjct: 380 PNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGL 439

Query: 179 IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PGPSVYKA 237
           I +GL  FY M++D  +E P ++HY  +V LLGRAG L EA   +N+M         + +
Sbjct: 440 ISEGLNLFYRMKHDHGVE-PTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSS 498

Query: 238 LLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
           LL AC++H N E+   +AK +L L PN  + YVLLSN+  +   W+ A ++R  M   G+
Sbjct: 499 LLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGV 558

Query: 298 RKKPGYSWV 306
           +K+PG SW+
Sbjct: 559 KKEPGCSWI 567



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 8/258 (3%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     D + ++ S   R+ +SWN +I+ F       +AL  F  M   G+++D  TI
Sbjct: 158 YAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTI 217

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            S++ A   +     GK++HA + +      N FV + LV MY  C  +    +VF  + 
Sbjct: 218 ASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHIL 277

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHA-GFIDKG 182
            R +  WN+++ G A +G   +A+ LF +M K   + P+ TT   V+ AC H+   I KG
Sbjct: 278 GRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKG 337

Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
            + + Y +RN  + +       +A+V +  + G LN +    N M  N     +  L+ A
Sbjct: 338 KEIHAYAIRNMLASDITVG---SALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMA 393

Query: 242 CQVHGNREIAVRSAKRVL 259
           C +HG  E A+   K ++
Sbjct: 394 CGMHGKGEEALELFKNMV 411



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 22/195 (11%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
           +R+  SW   +          +A+  + EM  +G   D F   +++ A+  +   K G+Q
Sbjct: 54  SRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQ 113

Query: 84  MHALIFKIGY-DSNVFVQNRLVFMYAICGAI--------------------NDANKVFSS 122
           +HA   K GY  S+V V N LV MY  CG I                    +D+  +F S
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFES 173

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             +RD+VSWN+++   +      EA+  F  M    ++ DG T   VL AC H   +D G
Sbjct: 174 FVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVG 233

Query: 183 LQ-YFYLMRNDASLE 196
            + + Y++RN+  +E
Sbjct: 234 KEIHAYVLRNNDLIE 248


>gi|359359135|gb|AEV41041.1| putative pentatricopeptide [Oryza minuta]
          Length = 724

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 108/293 (36%), Positives = 175/293 (59%), Gaps = 9/293 (3%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++ S+  ++ I W  ++AG  +LG GE AL+ F  M Q G  +D F+++S + +   ++G
Sbjct: 390 LFDSLTQKDVIMWTEMVAGHSSLGEGELALRYFVSMLQEGYSVDSFSLSSALNSTAELAG 449

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
            K+G+ +HA + K GY+ N+     LV MYA  GA+  A  VF ++ + DL  WNSL+ G
Sbjct: 450 LKQGEMLHAQVVKSGYEGNICASGSLVDMYAKNGALPGAYLVFCNIQKPDLKCWNSLIGG 509

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
             +HG S  A +LF +M +  ++PD  T++ +LSAC H G ++KG  Y++ M  D  +  
Sbjct: 510 YGNHGNSEMAFKLFGEMIRDGLQPDHVTYISLLSACSHCGLVEKGKFYWFCMMTDGIM-- 567

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNP----GPSVYKALLSACQVHGNREIAVR 253
           P  +HYT++V LL RAG L+EA   ++ M ++P     P +++ LLS+C    N  I V 
Sbjct: 568 PGFKHYTSMVSLLSRAGLLDEA---VDLMMKSPFTKKCPELWRILLSSCITFRNLSIGVH 624

Query: 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +A++VL+  P+D + ++LLSN+  +   WD   +IR  M    + K+PG SWV
Sbjct: 625 AAEQVLEQDPDDISTHILLSNLYASLGKWDVVAEIRKKMRGLMVEKEPGLSWV 677



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 4/181 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID----ID 61
           YS C        V+  + T + +SWN +IAGF  +G+G  A+  F +++    D     D
Sbjct: 273 YSSCGDLETALCVFERIETPDLVSWNTLIAGFSGVGNGFSAMHAFVQLKAVQFDERVVPD 332

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +T+ ++V A   +     GK +HA + K G +S+VFV N L+ MY        A  +F 
Sbjct: 333 EYTLAAVVSACATLPAMFGGKPLHAEVIKAGLESSVFVGNTLLNMYFTNEEPGSARILFD 392

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
           S+ ++D++ W  ++ G +  G    A++ F  M +     D  +    L++      + +
Sbjct: 393 SLTQKDVIMWTEMVAGHSSLGEGELALRYFVSMLQEGYSVDSFSLSSALNSTAELAGLKQ 452

Query: 182 G 182
           G
Sbjct: 453 G 453



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 20/197 (10%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSG--EQALKCFSEMRQAGIDIDYF 63
           YS+C +  D   V+  + TR+ ++WN ++   CN+  G  ++AL  F  M + G+     
Sbjct: 171 YSQCGAPGDANQVFDEMATRDGVAWNCVM--HCNVRYGYLDRALGQFCRMVRGGLPPTES 228

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           T++S++   G     + G+ +H  + K+   D ++ +QN L+ MY+ CG +  A  VF  
Sbjct: 229 TLSSVLSGCGRAGDRRRGRVLHGWVVKLEELDPDMPLQNALLDMYSSCGDLETALCVFER 288

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE----IKPDGTTFLVVLSACC---- 174
           ++  DLVSWN+L+ G +  G    A+  F Q++  +    + PD  T   V+SAC     
Sbjct: 289 IETPDLVSWNTLIAGFSGVGNGFSAMHAFVQLKAVQFDERVVPDEYTLAAVVSACATLPA 348

Query: 175 -------HAGFIDKGLQ 184
                  HA  I  GL+
Sbjct: 349 MFGGKPLHAEVIKAGLE 365



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 2/172 (1%)

Query: 2   QILT-YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLG-SGEQALKCFSEMRQAGID 59
           Q+L+ Y+R  +  D   +  S    + +S+N +++          +  + F  +  +G+ 
Sbjct: 64  QLLSLYARLSAIPDALALLRSTLRPSVVSYNTVLSALSRAPRHAPEGFRLFRRLHASGLR 123

Query: 60  IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
               ++ +++ A G +   + G   H+    +G+ ++  V   L+ MY+ CGA  DAN+V
Sbjct: 124 PTAPSLCALLRAAGELHDRRAGAAAHSQAATLGFLASDIVPTALLQMYSQCGAPGDANQV 183

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
           F  M  RD V+WN ++     +GY   A+  F +M +  + P  +T   VLS
Sbjct: 184 FDEMATRDGVAWNCVMHCNVRYGYLDRALGQFCRMVRGGLPPTESTLSSVLS 235


>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 944

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 168/302 (55%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C S    + ++   +  ++++SWN +IAG+ + G   +A+  F  M+   +  +  T
Sbjct: 546 YAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVT 605

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             +I+ A+  +S  +E    H  I ++G+ S   + N L+ MYA CG +  + K F  M+
Sbjct: 606 FVTILPAVSYLSILREAMAFHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEME 665

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            +D +SWN++L   A HG    AV LF  MQ++ ++ D  +++ VLSAC H+G I +G  
Sbjct: 666 NKDTISWNAMLSAYAMHGQGELAVALFSVMQESNVRVDSVSYISVLSACRHSGLIQEGWD 725

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            F  M     +EP   EHY  +V LLG AG  +E  S +N M+  P   V+ ALL+AC++
Sbjct: 726 IFASMCEKHHVEPS-MEHYACMVDLLGCAGLFDEVLSLLNKMTTEPDARVWGALLAACKI 784

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N  +   +   +L L P +P  +V+LS++      W+DA   R+ + N G++K PGYS
Sbjct: 785 HSNVTLGEVAVHHLLKLEPRNPVHHVVLSDIYAQCGRWNDARRTRSHINNHGLKKIPGYS 844

Query: 305 WV 306
           WV
Sbjct: 845 WV 846



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 121/236 (51%), Gaps = 4/236 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           +++ ++ ++ + WN +I GF   G    AL+ F+ ++ +GI  D  T+  +  A  ++  
Sbjct: 457 LFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDD 516

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF-SSMDERDLVSWNSLLL 136
              G  +H  I K G++S++ V+  L+ MYA CG++    ++F  +   +D VSWN ++ 
Sbjct: 517 LDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIA 576

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
           G  H+GYS EA+  F +M+   ++P+  TF+ +L A  +   + + + +   +     L 
Sbjct: 577 GYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILREAMAFHTCIIRMGFLS 636

Query: 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
                   +++ +  + G L  +E   + M  N     + A+LSA  +HG  E+AV
Sbjct: 637 CTLIG--NSLIDMYAKCGQLRYSEKCFHEM-ENKDTISWNAMLSAYAMHGQGELAV 689



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 122/254 (48%), Gaps = 5/254 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C      Q V+  +  R+ +SW  ++AG+   G   + L+   +MR+  + ++   +
Sbjct: 243 YCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAV 302

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            + +  +  +   ++GK+++    ++G  S++ V   +V MYA CG +  A ++F S++ 
Sbjct: 303 VNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEG 362

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           RDLV+W++ L      GY RE + +F+ MQ   +KPD     +++S C     I  G + 
Sbjct: 363 RDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIM 422

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + Y ++ D   +       T +V +  R      A +  N M +     V+  L++    
Sbjct: 423 HCYAIKADMESDISMV---TTLVSMYIRFELFTYAMTLFNRM-QIKDIVVWNTLINGFTK 478

Query: 245 HGNREIAVRSAKRV 258
           +G+  +A+    R+
Sbjct: 479 YGDPHLALEMFNRL 492



 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 86/180 (47%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  Y++C      + ++ S+  R+ ++W+A ++     G   + L  F  M+  G+  D 
Sbjct: 341 VCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDK 400

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
             ++ +V     IS    GK MH    K   +S++ +   LV MY        A  +F+ 
Sbjct: 401 AILSILVSGCTEISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNR 460

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           M  +D+V WN+L+ G   +G    A+++F ++Q + I PD  T + + SAC     +D G
Sbjct: 461 MQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLG 520



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 128/269 (47%), Gaps = 11/269 (4%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           +NV+  +  ++ + WNA+I+G     +  +AL+ F  M+  G ++D  +I ++  A+  +
Sbjct: 154 RNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRL 213

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                 K +H  + +        V N L+ MY  CG ++ A +VF  M  RD VSW +++
Sbjct: 214 GDVGCCKSIHGYVVRRSICG--VVSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMM 271

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
            G   +G   E +QL  +M++  +K +    +  L        ++KG + Y Y ++    
Sbjct: 272 AGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLM 331

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLSACQVHG-NREI-A 251
            +   A   T IV +  + G L +A E F++   R+     + A LSA    G  RE+ +
Sbjct: 332 SDIVVA---TPIVCMYAKCGELKKARELFLSLEGRD--LVAWSAFLSALVETGYPREVLS 386

Query: 252 VRSAKRVLDLWPNDPAIYVLLSNVSKATD 280
           +    +   L P+   + +L+S  ++ ++
Sbjct: 387 IFQVMQYEGLKPDKAILSILVSGCTEISN 415



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 75/165 (45%)

Query: 13  LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
           L     +  ++  + I +N+ I  +       +A+  +  + + G+  D FT   ++ A 
Sbjct: 50  LQIHTHFLQIKNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKAC 109

Query: 73  GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
                F EG  ++  I   G + +V++   L+ M+   G +++A  VF  M  +D V WN
Sbjct: 110 TSALDFHEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWN 169

Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           +++ G +      EA+++F +MQ    + D  + L +  A    G
Sbjct: 170 AMISGLSQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLG 214


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 106/282 (37%), Positives = 166/282 (58%), Gaps = 1/282 (0%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           +N ++WNA+I+G+      E  LK F  M + GI  +   ++S +     +S  + G+Q+
Sbjct: 247 KNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQI 306

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           H ++ K    ++V     L+ MY  CG + DA K+F  M ++D+V+WN+++ G A HG +
Sbjct: 307 HQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNA 366

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
            +A+ LF +M   +I+PD  TF+ VL AC HAG ++ G+ YF  M  D  +E P+ +HYT
Sbjct: 367 DKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVE-PQPDHYT 425

Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
            +V LLGRAG L EA   I SM   P  +V+  LL AC+VH N E+A  +A+++L L   
Sbjct: 426 CMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQ 485

Query: 265 DPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           + A YV L+N+  + + W+D   +R  M    + K PGYSW+
Sbjct: 486 NAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWI 527



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 87/212 (41%), Gaps = 21/212 (9%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           N IIA     G  + AL+ F  MR         TIT     IG+        + H L  +
Sbjct: 65  NKIIARCVRSGDIDGALRVFHGMRAKN------TITWNSLLIGISKDPSRMMEAHQLFDE 118

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
           I  + + F  N ++  Y        A   F  M  +D  SWN+++ G A  G   +A +L
Sbjct: 119 IP-EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKAREL 177

Query: 151 F-EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRA-EHYTAIVG 208
           F   M+K E+     ++  ++S     G ++K   +F        + P R    +TA++ 
Sbjct: 178 FYSMMEKNEV-----SWNAMISGYIECGDLEKASHFF-------KVAPVRGVVAWTAMIT 225

Query: 209 LLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
              +A  +  AE+    M+ N     + A++S
Sbjct: 226 GYMKAKKVELAEAMFKDMTVNKNLVTWNAMIS 257



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 14/137 (10%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR--EAVQLFEQ 153
            +F  N+++      G I+ A +VF  M  ++ ++WNSLL+G +    SR  EA QLF++
Sbjct: 60  QIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDP-SRMMEAHQLFDE 118

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR-NDASLEPPRAEHYTAIVGLLGR 212
           +     +PD  ++ ++LS        +K   +F  M   DA      A   T I G   R
Sbjct: 119 IP----EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDA------ASWNTMITGYARR 168

Query: 213 AGFLNEAESFINSMSRN 229
                  E F + M +N
Sbjct: 169 GEMEKARELFYSMMEKN 185



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 38/69 (55%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y +C    D   ++  ++ ++ ++WNA+I+G+   G+ ++AL  F EM    I  D+
Sbjct: 326 ISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDW 385

Query: 63  FTITSIVGA 71
            T  +++ A
Sbjct: 386 ITFVAVLLA 394


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 180/304 (59%), Gaps = 5/304 (1%)

Query: 6   YSRCDS-SLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C++ +L F+ V+S    +    WNAII+G  + G   +A++ F +M    +D +  T
Sbjct: 370 YAKCNNVNLSFR-VFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDAT 428

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM- 123
           + S++ A   ++  ++ + MH  + + G+ S + V   L+ +Y+ CG++  A+ +F+ + 
Sbjct: 429 LNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIP 488

Query: 124 -DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
             ++D+++W++++ G   HG+   A+ LF+QM ++ +KP+  TF  +L AC HAG +D+G
Sbjct: 489 KKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEG 548

Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
           L  F  M  D  +   R +HYT ++ LLGRAG L EA   I +M+  P  +V+ ALL +C
Sbjct: 549 LGLFKFMLEDNQMSL-RTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSC 607

Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
            +H N E+   +AK + +L P +   YVLL+N+  A   W DA  +R +M N G+RK P 
Sbjct: 608 VIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPA 667

Query: 303 YSWV 306
           +S +
Sbjct: 668 HSLI 671



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 136/278 (48%), Gaps = 7/278 (2%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C      + V+  +R R  +SWN +I G+   G  ++AL  F  M   GI+ D  T+
Sbjct: 168 YMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATV 227

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++     +   + G+++HAL+       ++ V N L+ MYA CG +++A  +F  MD+
Sbjct: 228 VSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDK 287

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
           RD+VSW +++ G   +G +R A+ L + MQ   +KP+  T   VLSAC     +  G   
Sbjct: 288 RDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCL 347

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           + + +R     E       TA++ +  +   +N +    +  S+    + + A++S C  
Sbjct: 348 HGWAIRQKLESEVIVE---TALIDMYAKCNNVNLSFRVFSKXSKQR-TAPWNAIISGCIH 403

Query: 245 HGNREIAVRSAKRVL--DLWPNDPAIYVLLSNVSKATD 280
           +G    A+   K++L   + PND  +  LL   +  TD
Sbjct: 404 NGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTD 441



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 3/224 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-IDYFT 64
           Y+ C  +   + ++  +R  +  SWNA+I  + N G    AL  F +M  +G    D +T
Sbjct: 66  YAMCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYT 125

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
              ++ A G     + G  +HA     G+DS+ FVQN L+ MY  CG +  A +VF  M 
Sbjct: 126 YPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMR 185

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           ER LVSWN+++ G   +G  +EA+ +F+ M    I+PD  T + VL  C +   ++ G +
Sbjct: 186 ERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRR 245

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
              L+      E      + +++ +  + G ++EA+     M +
Sbjct: 246 VHALVEVKNLGEDISV--WNSLLDMYAKCGNMDEAQMIFYEMDK 287



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFM---YAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
           KQ+HA    +G  S+ +  + L  +   YA+CG    A K+F  +    L SWN+++   
Sbjct: 38  KQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAMIRMY 97

Query: 139 AHHGYSREAVQLFEQMQKTEIK-PDGTTFLVVLSAC 173
            + G S +A+ LF QM  +  + PD  T+  V+ AC
Sbjct: 98  TNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKAC 133


>gi|242077632|ref|XP_002448752.1| hypothetical protein SORBIDRAFT_06g032560 [Sorghum bicolor]
 gi|241939935|gb|EES13080.1| hypothetical protein SORBIDRAFT_06g032560 [Sorghum bicolor]
          Length = 686

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 109/292 (37%), Positives = 172/292 (58%), Gaps = 3/292 (1%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           Q ++ SV  ++ I W  ++AG   LG GE +LK F  M Q G  +D F+++S + +   +
Sbjct: 350 QILFDSVMVKDVIMWTEMVAGHSALGEGELSLKYFIGMLQVGHKVDNFSLSSALNSTADL 409

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +G K+G+ +HA + K GY+ N+ V   LV MYA  G +  A  VF ++ + DL  WNS++
Sbjct: 410 AGLKQGEMLHAQVVKSGYEGNICVSGSLVDMYAKNGTLLGAYSVFCTIQKPDLKCWNSMI 469

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
            G  +HG S  A +LF  M ++ ++PD  T++ +LSAC H G ++KG  Y++ M ND  +
Sbjct: 470 GGYGNHGDSEMAFKLFGDMIRSGLQPDHVTYISLLSACSHCGLVEKGKLYWFCMINDGIV 529

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFIN-SMSRNPGPSVYKALLSACQVHGNREIAVRS 254
             P  +HYT++V LL RAG L EA   IN S S    P +++ LLS+C    +  I V +
Sbjct: 530 --PGFKHYTSMVSLLSRAGLLEEAVDLINKSPSAKRYPELWRILLSSCVTFKDLSIGVHA 587

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           A++ L+  P+D + ++LLSN+  +   WD   +IR  +    I K+PG SW+
Sbjct: 588 AEKALEQDPDDLSTHILLSNLYASIGKWDSVSEIRRRIRGLMIEKEPGLSWI 639



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 19/203 (9%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSG--EQALKCFSEMRQAGIDIDYF 63
           Y  C S  D   V+  + T + ++WN ++   CN+  G  ++AL  F  M   G+     
Sbjct: 134 YYGCGSPRDANQVFDEMMTPDVVAWNCVM--HCNVRYGYLDRALGKFCRMVSTGLAPTES 191

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAICGAINDANKVFSS 122
           T++S++   G       G+ +H  + K    D ++ +QN L+ MY  C  ++ A +VF  
Sbjct: 192 TLSSVLSGCGHSGDLDHGRALHGWVVKSEELDPDLPLQNALLDMYCCCCDLDTAVRVFQR 251

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT---EIKPDGTTF------LVVLSAC 173
           +   DLVSWN+++ G +  G    AVQ F Q++      + PD  TF         L A 
Sbjct: 252 IGTPDLVSWNTIIAGFSGVGDGWSAVQAFVQLKAVSSERLAPDEYTFASVVAAAAPLPAM 311

Query: 174 C-----HAGFIDKGLQYFYLMRN 191
           C     HAG I  GL+    + N
Sbjct: 312 CSGKPLHAGVIKAGLESSVFVAN 334



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 1/193 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFC-NLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y R  +  D   +  S    + +S+N +++     L     A   F ++  +G+     +
Sbjct: 32  YCRLSAVPDALALLRSTPCPSVVSYNTVLSALSRTLRHAPDAFGLFRDLHSSGLRPTAPS 91

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + +++ A G +   + G   HA    +G+ ++  V   L+ MY  CG+  DAN+VF  M 
Sbjct: 92  LCAVLRAAGSLRDGRAGAAAHAQAAALGFLASDIVPTALLQMYYGCGSPRDANQVFDEMM 151

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             D+V+WN ++     +GY   A+  F +M  T + P  +T   VLS C H+G +D G  
Sbjct: 152 TPDVVAWNCVMHCNVRYGYLDRALGKFCRMVSTGLAPTESTLSSVLSGCGHSGDLDHGRA 211

Query: 185 YFYLMRNDASLEP 197
               +     L+P
Sbjct: 212 LHGWVVKSEELDP 224


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 107/286 (37%), Positives = 167/286 (58%), Gaps = 2/286 (0%)

Query: 22  VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG 81
           +  +N +SW  IIAG+      E+ L+ F+ +  +G   +  T +S++ A   I+   +G
Sbjct: 408 IPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKG 467

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
             +H  I K+G   ++FV   L  MYA CG I  + +VF  M E++ +SW  ++ G A  
Sbjct: 468 MNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAES 527

Query: 142 GYSREAVQLFEQMQKT-EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRA 200
           G++ E++ LFE+M++T E+ P+    L VL AC H G +DKGL YF  M     ++P + 
Sbjct: 528 GFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKP-KG 586

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260
           +HYT +V LL R+G L EAE FI ++   P  + + ALLS C+ + + +IA R+AK++  
Sbjct: 587 KHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQ 646

Query: 261 LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           L  N+ A YVLLSN+  +   W D  +IR LM  +G++K  G SWV
Sbjct: 647 LAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWV 692



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 31/199 (15%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN+ISW+A+IA +   G  E+ALK FS+M Q G   +       + A+  +
Sbjct: 270 RRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASL 329

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G  +H  + KIG D +VF+ + L+ +Y  CG  +D   VF  + E+++V WNS++
Sbjct: 330 RALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMV 389

Query: 136 LGCAHHGYS-------------------------------REAVQLFEQMQKTEIKPDGT 164
            G + +G                                  + +++F  +  +   P+ +
Sbjct: 390 GGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKS 449

Query: 165 TFLVVLSACCHAGFIDKGL 183
           TF  VL AC     +DKG+
Sbjct: 450 TFSSVLCACASIASLDKGM 468



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 101/188 (53%), Gaps = 9/188 (4%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           ++ Y R + S+ +   +     +N +SW A I+GF   G   +ALK F  + ++G+  + 
Sbjct: 128 LMKYGRVEESMWY---FERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPND 184

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T TS+V A G +  F  G  +  L+ K G++  + V N L+ +    G I+ A +VF  
Sbjct: 185 VTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDR 244

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDK 181
           M++RD+VSW ++L      G  REA ++F++M ++ EI     ++  +++    +G+ ++
Sbjct: 245 MEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEI-----SWSAMIARYSQSGYAEE 299

Query: 182 GLQYFYLM 189
            L+ F  M
Sbjct: 300 ALKLFSKM 307



 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 96/255 (37%), Gaps = 77/255 (30%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAIC----------------------------- 110
           +G  +HA + K G+ S  ++  +L+ +Y  C                             
Sbjct: 39  QGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYV 98

Query: 111 --GAINDANKVFSSMDERDLVSWNSLLLGCAHHG--------YSR--------------- 145
             G +  A  +F  M ER+ VSW++L+ G   +G        + R               
Sbjct: 99  QWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISG 158

Query: 146 --------EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
                   EA++LF ++ ++ ++P+  TF  V+ AC   G    G+    L+        
Sbjct: 159 FVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAG---- 214

Query: 198 PRAEHYTAI----VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
              EHY ++    + L  R G ++ A    + M +    S + A+L A    G+    +R
Sbjct: 215 --FEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVS-WTAILDAYVETGD----LR 267

Query: 254 SAKRVLDLWPNDPAI 268
            A+R+ D  P    I
Sbjct: 268 EARRIFDEMPERNEI 282


>gi|6041788|gb|AAF02108.1|AC009755_1 hypothetical protein [Arabidopsis thaliana]
          Length = 332

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 104/277 (37%), Positives = 158/277 (57%), Gaps = 2/277 (0%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           N+II+G+      E A   F+ M + GI  D FT  +++     ++    GKQ+HA + K
Sbjct: 1   NSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIK 60

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
               S+V++ + LV MY+ CG ++D+  +F     RD V+WN+++ G AHHG   EA+QL
Sbjct: 61  KELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQL 120

Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLL 210
           FE+M    IKP+  TF+ +L AC H G IDKGL+YFY+M+ D  L+ P+  HY+ +V +L
Sbjct: 121 FERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLD-PQLPHYSNMVDIL 179

Query: 211 GRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR-EIAVRSAKRVLDLWPNDPAIY 269
           G++G +  A   I  M       +++ LL  C +H N  E+A  +   +L L P D + Y
Sbjct: 180 GKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAY 239

Query: 270 VLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            LLSNV      W+   D+R  M    ++K+PG SWV
Sbjct: 240 TLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWV 276



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D + ++     R+ ++WNA+I G+ + G GE+A++ F  M    I  ++ T 
Sbjct: 77  YSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTF 136

Query: 66  TSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
            SI+ A   +    +G +   ++ +  G D  +   + +V +    G +  A ++   M 
Sbjct: 137 ISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMP 196

Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK---PDGTTFLVVLSACCHAGFID 180
            E D V W +LL  C  H   R  V++ E+     ++    D + + ++ +    AG  +
Sbjct: 197 FEADDVIWRTLLGVCTIH---RNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWE 253

Query: 181 K 181
           K
Sbjct: 254 K 254


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 165/301 (54%), Gaps = 1/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YSR +     + ++     +   +WNA+I+G+   G  E A+  F EM       +  TI
Sbjct: 350 YSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTI 409

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TSI+ A   +     GK +H LI     + N++V   L+ MYA CG I++A+++F    E
Sbjct: 410 TSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSE 469

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++ V+WN+++ G   HGY  EA++LF +M     +P   TFL VL AC HAG + +G + 
Sbjct: 470 KNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEI 529

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F+ M N   +E P AEHY  +V +LGRAG L +A  FI  M   PGP+V+  LL AC +H
Sbjct: 530 FHAMVNKYRIE-PLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIH 588

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            +  +A  +++R+ +L P +   YVLLSN+      +  A  +R  +  R + K PG + 
Sbjct: 589 KDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTL 648

Query: 306 V 306
           +
Sbjct: 649 I 649



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 124/262 (47%), Gaps = 9/262 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  +S+C+     + ++  +R  + +S+NA+I+GF   G  E A+K F E+  +G  +  
Sbjct: 246 ISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRV-- 303

Query: 63  FTITSIVGAIGVISGFKEGKQ---MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            + +++VG I V S F        +     K G      V   L  +Y+    I+ A ++
Sbjct: 304 -SSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQL 362

Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
           F    E+ + +WN+++ G A  G +  A+ LF++M  TE  P+  T   +LSAC   G +
Sbjct: 363 FDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGAL 422

Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
             G     L+++  +LE       TA++ +  + G ++EA    + ++       +  ++
Sbjct: 423 SFGKSVHQLIKSK-NLE-QNIYVSTALIDMYAKCGNISEASQLFD-LTSEKNTVTWNTMI 479

Query: 240 SACQVHGNREIAVRSAKRVLDL 261
               +HG  + A++    +L L
Sbjct: 480 FGYGLHGYGDEALKLFNEMLHL 501



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/322 (20%), Positives = 135/322 (41%), Gaps = 40/322 (12%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + V+  +  R+ + WN +I G       + +++ F +M   G+ +D  T+ +++ A+  +
Sbjct: 158 RKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEM 217

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              K G  +  L  K+G+  + +V   L+ +++ C  ++ A  +F  + + DLVS+N+L+
Sbjct: 218 QEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALI 277

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS----------ACCHAGF------- 178
            G + +G +  AV+ F ++  +  +   +T + ++           ACC  GF       
Sbjct: 278 SGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTI 337

Query: 179 ----IDKGLQYFYLMRNDASL--------EPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
               +   L   Y   N+  L               + A++    ++G    A S    M
Sbjct: 338 LQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEM 397

Query: 227 SR---NPGPSVYKALLSACQVHGNREIA------VRSAKRVLDLWPNDPAI--YVLLSNV 275
                 P P    ++LSAC   G           ++S     +++ +   I  Y    N+
Sbjct: 398 MTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNI 457

Query: 276 SKATDCWDDAGDIRTLMYNRGI 297
           S+A+  +D   +  T+ +N  I
Sbjct: 458 SEASQLFDLTSEKNTVTWNTMI 479



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 13/184 (7%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
           G  +HA     G+DSN+FV + LV +Y     +  A KVF  M +RD V WN+++ G   
Sbjct: 122 GMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVR 181

Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRA 200
           +    ++VQ+F+ M    ++ D TT   VL A      +  G+           L     
Sbjct: 182 NCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGI-------QCLALKLG 234

Query: 201 EHY-----TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
            H+     T ++ +  +   ++ A   +  M R P    Y AL+S    +G  E AV+  
Sbjct: 235 FHFDDYVLTGLISVFSKCEDVDTAR-LLFGMIRKPDLVSYNALISGFSCNGETECAVKYF 293

Query: 256 KRVL 259
           + +L
Sbjct: 294 RELL 297


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 171/302 (56%), Gaps = 3/302 (0%)

Query: 6   YSRCDSSLDFQ-NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C   LD     +  +   + I WN++I+ F   G  E A+  F +M  +G   D  +
Sbjct: 493 YAKC-GRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVS 551

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           ++S + +   +     GK+MH  + +  + S+ FV + L+ MY+ CG +  A  VF+ M 
Sbjct: 552 LSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMA 611

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
            ++ VSWNS++    +HG +RE + LF +M +  + PD  TFLV++SAC HAG + +G+ 
Sbjct: 612 GKNEVSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLVGEGIH 671

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
           YF+ M  +  +   R EHY  +V L GRAG L+EA   I SM   P   V+  LL AC++
Sbjct: 672 YFHCMTREYGIG-ARMEHYACMVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGTLLGACRL 730

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           HGN E+A  +++ +L+L P +   YVLLSNV      W     +R LM  +G++K PGYS
Sbjct: 731 HGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWGSVLKVRRLMKEKGVQKIPGYS 790

Query: 305 WV 306
           W+
Sbjct: 791 WI 792



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
           D + V+  +  R+ I WN ++ G+   G    A+  F  MR +   ++  T T I+    
Sbjct: 198 DARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICA 257

Query: 74  VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
               F  G Q+H L+   G++ +  V N LV MY+ CG + DA K+F++M + D V+WN 
Sbjct: 258 TRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNG 317

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
           L+ G   +G++ EA  LF  M    +KPD  TF   L +   +G
Sbjct: 318 LIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESG 361



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 2/224 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y  C    D  N++  +   N + WN +I G   LG  + AL  + +M  + +  D +T 
Sbjct: 89  YVLCGRISDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTF 148

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A G ++       +H     +G+  ++FV + L+ +YA  G I DA +VF  + +
Sbjct: 149 PYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQ 208

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           RD + WN +L G    G    A+  F  M+ +    +  T+  +LS C   G    G Q 
Sbjct: 209 RDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQV 268

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
             L+        P+  +   +V +  + G L +A    N+M + 
Sbjct: 269 HGLVIGSGFEFDPQVAN--TLVAMYSKCGNLFDARKLFNTMPQT 310



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 83/167 (49%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           +  YS+C +  D + +++++   + ++WN +IAG+   G  ++A   F+ M  AG+  D 
Sbjct: 288 VAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDS 347

Query: 63  FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            T  S + +I      +  K++H+ I +     +V++++ L+ +Y   G +  A K+F  
Sbjct: 348 VTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQ 407

Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV 169
               D+    +++ G   HG + +A+  F  + +  + P+  T   V
Sbjct: 408 NTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASV 454



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 68/132 (51%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
            A+I+G+   G    A+  F  + Q G+  +  T+ S++ A   ++  K GK++H  I K
Sbjct: 417 TAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILK 476

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
              ++ V V + +  MYA CG ++ A + F  M E D + WNS++   + +G    AV L
Sbjct: 477 KQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDL 536

Query: 151 FEQMQKTEIKPD 162
           F QM  +  K D
Sbjct: 537 FRQMGMSGAKFD 548



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 2/115 (1%)

Query: 61  DYFT--ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
           DY T  + S+  A    S  ++ +Q+H  I   G      + +R++ +Y +CG I+D   
Sbjct: 41  DYLTTQLESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGN 100

Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
           +F  ++  + + WN ++ G    G+   A+  + +M  + + PD  TF  V+ AC
Sbjct: 101 LFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC 155


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 104/308 (33%), Positives = 177/308 (57%), Gaps = 3/308 (0%)

Query: 1    LQILT-YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID 59
            L +L+ Y  C      Q ++ ++  ++ +SWN +I G+   G  ++AL  F +M   GI 
Sbjct: 890  LSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQ 949

Query: 60   IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            +   ++  + GA  ++   + G++ HA   K   + + F+   L+ MYA  G+I  ++KV
Sbjct: 950  LCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKV 1009

Query: 120  FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
            F+ + E+   SWN++++G   HG ++EA++LFE+MQ+T   PD  TFL VL+AC H+G I
Sbjct: 1010 FNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLI 1069

Query: 180  DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFI-NSMSRNPGPSVYKAL 238
             +GL+Y   M++   L+ P  +HY  ++ +LGRAG L++A   +   MS      ++K+L
Sbjct: 1070 HEGLRYLDQMKSSFGLK-PNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 1128

Query: 239  LSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
            LS+C++H N E+  + A ++ +L P  P  YVLLSN+      W+D   +R  M    +R
Sbjct: 1129 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 1188

Query: 299  KKPGYSWV 306
            K  G SW+
Sbjct: 1189 KDAGCSWI 1196



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 5/176 (2%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           I  Y+ C S  D + V+ ++R++N   WNA+I+ +      ++ L+ F EM     +  D
Sbjct: 482 ITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPD 541

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           +FT   ++ A   +S    G  +H L+ K G   +VFV N LV  Y   G + DA ++F 
Sbjct: 542 HFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFD 601

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE----IKPDGTTFLVVLSAC 173
            M ER+LVSWNS++   + +G+S E+  L  +M +        PD  T + VL  C
Sbjct: 602 IMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVC 657



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 124/256 (48%), Gaps = 13/256 (5%)

Query: 3    ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
            + +Y++C S    Q V+  +R++   SWNA+I G         +L    +M+ +G+  D 
Sbjct: 792  VASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDS 851

Query: 63   FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
            FT+ S++ A   +   + GK++H  I +   + ++FV   ++ +Y  CG +     +F +
Sbjct: 852  FTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDA 911

Query: 123  MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
            M+++ LVSWN+++ G   +G+   A+ +F QM    I+  G + + V  AC     +  G
Sbjct: 912  MEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG 971

Query: 183  LQYF-----YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
             +       +L+ +DA +         +++ +  + G + ++    N +      S + A
Sbjct: 972  REAHAYALKHLLEDDAFIA-------CSLIDMYAKNGSITQSSKVFNGLKEKSTAS-WNA 1023

Query: 238  LLSACQVHGNREIAVR 253
            ++    +HG  + A++
Sbjct: 1024 MIMGYGIHGLAKEAIK 1039



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 3/189 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYF 63
           YS+C    + Q ++     +N +SWN ++ GF   G          +M   G D+  D  
Sbjct: 692 YSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEV 751

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           TI + V      S     K++H    K  +  N  V N  V  YA CG+++ A +VF  +
Sbjct: 752 TILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGI 811

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
             + + SWN+L+ G A     R ++    QM+ + + PD  T   +LSAC     +  G 
Sbjct: 812 RSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGK 871

Query: 184 Q-YFYLMRN 191
           + + +++RN
Sbjct: 872 EVHGFIIRN 880



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 6/172 (3%)

Query: 14  DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT-ITSIVGAI 72
           D   ++  +  RN +SWN++I  F + G  E++     EM +   D  +   + ++V  +
Sbjct: 595 DALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVL 654

Query: 73  GVISGFKE---GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
            V +  +E   GK +H    K+  D  + + N L+ MY+ CG I +A  +F   + +++V
Sbjct: 655 PVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVV 714

Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLSACCHAGFI 179
           SWN+++ G +  G +     +  QM     ++K D  T L  +  C H  F+
Sbjct: 715 SWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL 766



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 95/202 (47%), Gaps = 12/202 (5%)

Query: 34  IAGFCNLGSGEQALKCFSEM---RQAGIDIDYFTITSIVGAIGVISGFKE----GKQMHA 86
           I+ FC  G  +++ +   E     ++  D  +  +   +G +   SG ++    G+++H 
Sbjct: 405 ISNFCETGDLDKSFRTVQEFVGDDESSSDA-FLLVREALGLLLQASGKRKDIEMGRKIHQ 463

Query: 87  LIF-KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
           L+       ++  +  R++ MYA+CG+ +D+  VF ++  ++L  WN+++   + +    
Sbjct: 464 LVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYD 523

Query: 146 EAVQLF-EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
           E ++ F E +  T++ PD  T+  V+ AC     +  GL    L+     +E     +  
Sbjct: 524 EVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGN-- 581

Query: 205 AIVGLLGRAGFLNEAESFINSM 226
           A+V   G  GF+ +A    + M
Sbjct: 582 ALVSFYGTHGFVTDALQLFDIM 603


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 175/303 (57%), Gaps = 6/303 (1%)

Query: 5   TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
            Y++C      + ++  +  RN +SW+ +IA +  L   E+A+  F EM  AG+D    T
Sbjct: 320 AYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDAT 379

Query: 65  ITSIVGAIGVISGFKEGKQMHA---LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           + S++ A   +     G+ ++    +  KIG   N+   N L+ M+A CG + +A+K+F 
Sbjct: 380 LVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNL--GNALIDMFAKCGDVGEASKLFD 437

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            M ER++VSWN++++  A HG S EA++LFEQ++   I PD  TFL +L++C H+G + +
Sbjct: 438 EMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSE 497

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G +YF  M     +E PR EHY  ++ LLG+ G L EA      M      + + ALL+A
Sbjct: 498 GRRYFKEMEMFYRIE-PRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNA 556

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++HGN EI    A ++++L P+D  IYVL+S +  + + WD    +R  M +RG++K P
Sbjct: 557 CRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNP 616

Query: 302 GYS 304
           G S
Sbjct: 617 GCS 619



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 119/282 (42%), Gaps = 38/282 (13%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDIDYFT 64
           Y+   S  D   V+  +  R+ +SW  ++ G+   G  ++A + F  M    G+  +  T
Sbjct: 188 YANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVT 247

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           + + V AIG +     G  +H  + + G   +V + N LV M+  CG +  A +VF  M+
Sbjct: 248 LVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGME 307

Query: 125 ERDLVSWNSLL--------------------------LGCAHHGYSR-----EAVQLFEQ 153
            +D+ SW S++                            C    YS+     EAV LF +
Sbjct: 308 VKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFRE 367

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF--YLMRNDASLEPPRAEHYTAIVGLLG 211
           M    + P   T + VLSAC   G +D G   +  Y++ N   L         A++ +  
Sbjct: 368 MIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLT---VNLGNALIDMFA 424

Query: 212 RAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
           + G + EA    + M+     S +  ++ A  VHG  E A+R
Sbjct: 425 KCGDVGEASKLFDEMAERNVVS-WNTMIMAHAVHGQSEEAIR 465



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 4/149 (2%)

Query: 81  GKQMHALIFKIGY-DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
           G+ +H    K G+   +V V N LV  YA   +++DA KVF  M ERD+VSW +L+ G A
Sbjct: 161 GEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYA 220

Query: 140 HHGYSREAVQLFEQMQKT-EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP 198
             G + EA +LF +M     ++P+  T +  +SA    G +  G+     +         
Sbjct: 221 RAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSV 280

Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSMS 227
             ++  A+V + G+ G +  A    + M 
Sbjct: 281 NLDN--ALVDMFGKCGCVRYAREVFDGME 307


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 170/291 (58%), Gaps = 1/291 (0%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           ++++  +  R+ I+W A+I G+  +G    AL+ F  M+   +  D FT+ S+V A   +
Sbjct: 247 RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQL 306

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + G+     + ++G   +VFV N L+ MY+ CG+I  A  VF  M  RD  +W +++
Sbjct: 307 GALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAII 366

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
           LG A +G   EA+ +F +M +    PD  TF+ VL+AC HAG +DKG ++F  M    ++
Sbjct: 367 LGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNI 426

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
            P    HY  ++ +LGRAG L EA   I+ M   P  +++  LL++C+V+GN EI   +A
Sbjct: 427 SPT-VVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAA 485

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           +R+L+L P++   Y+LLSN+   ++ W D   IR ++  +GI+K+PG S +
Sbjct: 486 ERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMI 536



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 108/264 (40%), Gaps = 36/264 (13%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           + WNA+I+G    G  E +   F +M +A       T  S++ A G       G Q+H  
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186

Query: 88  IFKIGYDSNVFVQNRLVFMYAIC-------------------------------GAINDA 116
           + + G   +  V+N LV MYA C                               G ++ A
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176
             +F  M ERD ++W +++ G    G  R+A++ F  MQ  +++ D  T + V++AC   
Sbjct: 247 RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQL 306

Query: 177 GFIDKG-LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVY 235
           G ++ G     Y+ R    ++        A++ +  + G +  A      M  N     +
Sbjct: 307 GALETGEWARIYMGRLGIKMDVFVG---NALIDMYSKCGSIERALDVFKDM-HNRDKFTW 362

Query: 236 KALLSACQVHGNREIAVRSAKRVL 259
            A++    V+G  E A+    R+L
Sbjct: 363 TAIILGLAVNGRGEEAIDMFYRML 386



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 14/173 (8%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C S     +V+  +  R++ +W AII G    G GE+A+  F  M +A    D  T 
Sbjct: 338 YSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTF 397

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
             ++ A        +G++     F +       +   +V    +   +  A K+  ++D 
Sbjct: 398 VGVLTACTHAGLVDKGRE-----FFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDT 452

Query: 126 RDLVS-------WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
            D +        W +LL  C  +G S       E++   E+ PD +T  ++LS
Sbjct: 453 IDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERL--LELDPDNSTAYILLS 503


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  206 bits (525), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 168/291 (57%), Gaps = 3/291 (1%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID--IDYFTITSIVGAIGVI 75
           V+  +  +N +SW+A+IA +   G   +AL+ F EM     D   +  T+ S++ A    
Sbjct: 231 VFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAF 290

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
           +  ++GK +HA I + G DS + V + L+ MYA CG +     +F  M ++D+V WNSL+
Sbjct: 291 AALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLI 350

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
                HGY R+A+++FE+M      P   +F+ VL AC H G +++G + F  M  +  +
Sbjct: 351 SSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGI 410

Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
           +P   EHY  +V LLGRA  L+EA   I  +   PGP V+ +LL AC++H + E+A R++
Sbjct: 411 QPS-VEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERAS 469

Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           KR+  L P +   YVLL+++    + WD+   ++ L+ +R ++K PG SW+
Sbjct: 470 KRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWI 520



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 131/263 (49%), Gaps = 13/263 (4%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           +S  D+  + + V+   R R    WNA+       G G   L+ +  M   G+  D FT 
Sbjct: 114 FSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTY 173

Query: 66  TSIVGAI----GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           T ++ A      ++S  ++GK++HA I + GY ++V V   L+ MYA  G ++ A+ VF 
Sbjct: 174 TYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFD 233

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFI 179
            M  +++VSW++++   A +G   EA++LF +M     +  P+  T + VL AC     +
Sbjct: 234 EMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAAL 293

Query: 180 DKG--LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
           ++G  +  + L R   S+ P      +A++ +  R G L   +   + M +     ++ +
Sbjct: 294 EQGKLIHAYILRRGLDSILPV----ISALITMYARCGKLESGQLIFDRMHKK-DVVLWNS 348

Query: 238 LLSACQVHGNREIAVRSAKRVLD 260
           L+S+  +HG    A++  + ++D
Sbjct: 349 LISSYGLHGYGRKAIKIFEEMID 371



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 88/201 (43%), Gaps = 12/201 (5%)

Query: 31  NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
           N +I   C  G+ +QAL   S            T   ++ +    +   +   +H L+  
Sbjct: 42  NHLIQSLCKQGNLKQALYLLSHESNPTQQ----TCELLILSAARRNSLSDALDVHQLLVD 97

Query: 91  IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
            G+D + F+  +L+ M++    +++A KVF    +R +  WN+L    A  G   + ++L
Sbjct: 98  GGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLEL 157

Query: 151 FEQMQKTEIKPDGTTFLVVLSAC----CHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTA 205
           + +M    +  D  T+  +L AC    C   F+ KG + + +++R+            T 
Sbjct: 158 YPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYG---AHVHVMTT 214

Query: 206 IVGLLGRAGFLNEAESFINSM 226
           ++ +  R G ++ A +  + M
Sbjct: 215 LMDMYARFGCVSYASAVFDEM 235



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 6/164 (3%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y+RC      Q ++  +  ++ + WN++I+ +   G G +A+K F EM   G    +
Sbjct: 319 ITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSH 378

Query: 63  FTITSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
            +  S++GA       +EGK++  +++ + G   +V     +V +      +++A K+  
Sbjct: 379 ISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIE 438

Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164
            +  E     W SLL  C  H +    V+L E+  K   K + T
Sbjct: 439 DLRIEPGPKVWGSLLGACRIHCH----VELAERASKRLFKLEPT 478


>gi|293336045|ref|NP_001168520.1| uncharacterized protein LOC100382300 [Zea mays]
 gi|195615774|gb|ACG29717.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
 gi|223946951|gb|ACN27559.1| unknown [Zea mays]
          Length = 616

 Score =  206 bits (525), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 164/296 (55%), Gaps = 8/296 (2%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            V+  +  +++I+W A+I+G    G  + AL+ F +M   G+    F + S +GA   + 
Sbjct: 267 QVFDMMPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLG 326

Query: 77  GFKEGKQMHALIFKIGYDS---NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
               GK++H  I +    S   N+F+ N LV MY+ CG +  A  VF  M ERD +SWNS
Sbjct: 327 LVTRGKELHCFILRRNIGSVPFNIFIHNALVDMYSKCGDMMAAMAVFDWMPERDFISWNS 386

Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193
           ++ G +H+G  ++++ +FE+M    ++P   TFL VL+AC H+G +  G      M  D 
Sbjct: 387 MVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLVLESM-EDH 445

Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV---YKALLSACQVHGNREI 250
            +E PRAEHY A +  LGR   L EA  FI  +    GP     + ALL AC++HGN E+
Sbjct: 446 GVE-PRAEHYAAFIDALGRNHQLEEATEFIKDLPSRIGPGTAGSWGALLGACRLHGNIEL 504

Query: 251 AVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           A   A+ +  L P +   YV++SN+  A   WDDA  +R LM  +G++K   YSW+
Sbjct: 505 AEEVAEFLFRLEPGNSGRYVMMSNIYAAAGQWDDARRVRGLMKEKGLKKDQAYSWI 560



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 38/210 (18%)

Query: 24  TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQ-----AGIDIDYFTITSIVGAIGVISGF 78
           +RN +S+N +++   + G   +AL+  + + +      G+ +D FT+ S+  A   I   
Sbjct: 137 SRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLAMDRFTVVSVATACAGIGAA 196

Query: 79  KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN--------------------- 117
           +  ++MH  +   G +  V + N ++  Y+    + DA                      
Sbjct: 197 RPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGY 256

Query: 118 ----------KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167
                     +VF  M ++D ++W +L+ G   +G    A++LFEQM    + P     +
Sbjct: 257 CQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLV 316

Query: 168 VVLSACCHAGFIDKG--LQYFYLMRNDASL 195
             L AC   G + +G  L  F L RN  S+
Sbjct: 317 SALGACAKLGLVTRGKELHCFILRRNIGSV 346



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 12/161 (7%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C   +    V+  +  R+ ISWN+++ GF + G G+Q+L  F EM  AG+   + T 
Sbjct: 360 YSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTF 419

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNV--FVQNRLVFMYAIC--GAINDANKVFS 121
            +++ A         G+    L+ +   D  V    ++   F+ A+     + +A +   
Sbjct: 420 LAVLTACSHSGLVSNGR----LVLESMEDHGVEPRAEHYAAFIDALGRNHQLEEATEFIK 475

Query: 122 SMDER----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
            +  R       SW +LL  C  HG    A ++ E + + E
Sbjct: 476 DLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLE 516



 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 104/272 (38%), Gaps = 69/272 (25%)

Query: 81  GKQMHALIFKIGYDSNVFVQNRLVFMYAICGA---------------------------- 112
           G+ +HA + K    S+  + NRLV +Y+   +                            
Sbjct: 59  GRAVHAHLVKTALTSHTLLSNRLVALYSSLPSPAAAVKAFYDLPHKNAHSYNTLLAALLR 118

Query: 113 ----INDANKVFSSM--DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-----IKP 161
               + DA ++F +M  D R+LVS+N+L+   AHHG   EA+++  ++ +       +  
Sbjct: 119 RPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLAM 178

Query: 162 DGTTFLVVLSACC-----------HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLL 210
           D  T + V +AC            H   +  G+++  +M N             A++   
Sbjct: 179 DRFTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMAN-------------AMLNAY 225

Query: 211 GRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN-DPAIY 269
            +A  + +A    + +S     +    +   CQV    E     A +V D+ P+ D   +
Sbjct: 226 SKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHE-----AVQVFDMMPDKDRIAW 280

Query: 270 VLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
             L +  +     D A ++   M  +G+   P
Sbjct: 281 TALISGHEQNGEEDTALELFEQMLAKGVSPTP 312


>gi|297800494|ref|XP_002868131.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313967|gb|EFH44390.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 484

 Score =  206 bits (525), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 162/279 (58%), Gaps = 1/279 (0%)

Query: 28  ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
           I WNA+I+G+   G  ++ L  + +MRQ GI  D +T  S+      ++  + GK+ HA+
Sbjct: 158 IPWNAMISGYVQKGLEQEGLYIYYDMRQNGIVPDQYTFASVFRVCSALASLEHGKRAHAV 217

Query: 88  IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
           + K    SN+ V + LV MY  C + +D +KVF  +  R++V+W SL+ G  +HG   E 
Sbjct: 218 MIKRHIKSNIIVDSALVDMYFKCSSFSDGHKVFDQLSTRNVVTWTSLMSGYGYHGKVSEV 277

Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
           ++ FE+M++   +P+  TFLVVL+AC H G +DKG ++F  M+ D  +E P  +HY A+V
Sbjct: 278 LKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHFNSMKRDYGIE-PEGQHYAAMV 336

Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267
             LGRAG L EA  F+          V+ +LL AC++HGN ++   +A + L+L P +  
Sbjct: 337 DTLGRAGRLQEAYEFVMKSPCKEHAPVWGSLLGACRIHGNVKLLELAATKFLELDPTNGG 396

Query: 268 IYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
            YV+ +N   +    D A  +R  M N G++K PGYS +
Sbjct: 397 NYVVFANGYASCGFRDAASKVRRRMENAGVKKDPGYSQI 435



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 20/158 (12%)

Query: 25  RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
           R +   +  + G C  G  ++A+      R   + ++  T   ++        + +GK++
Sbjct: 74  RKKEKLDKTLKGLCVTGRLKEAVGLLWRSR---LQVEPETYAVLLQECKQRKEYTKGKRI 130

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
           HA +  +GY  N +++ +L+ +YA+                 DL+ WN+++ G    G  
Sbjct: 131 HAQMIVVGYAPNEYLKVKLLILYAL-----------------DLIPWNAMISGYVQKGLE 173

Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
           +E + ++  M++  I PD  TF  V   C     ++ G
Sbjct: 174 QEGLYIYYDMRQNGIVPDQYTFASVFRVCSALASLEHG 211



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 13/200 (6%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D   V+  + TRN ++W ++++G+   G   + LKCF +M++ G   +  T 
Sbjct: 237 YFKCSSFSDGHKVFDQLSTRNVVTWTSLMSGYGYHGKVSEVLKCFEKMKEEGCRPNPVTF 296

Query: 66  TSIVGAI---GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK-VFS 121
             ++ A    G++   K  +  +++    G +        +V      G + +A + V  
Sbjct: 297 LVVLTACNHGGLVD--KGWEHFNSMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEFVMK 354

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFE--QMQKTEIKP-DGTTFLVVLSACCHAGF 178
           S  +     W SLL  C  HG     V+L E    +  E+ P +G  ++V  +     GF
Sbjct: 355 SPCKEHAPVWGSLLGACRIHG----NVKLLELAATKFLELDPTNGGNYVVFANGYASCGF 410

Query: 179 IDKGLQYFYLMRNDASLEPP 198
            D   +    M N    + P
Sbjct: 411 RDAASKVRRRMENAGVKKDP 430


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  206 bits (525), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 174/305 (57%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           I  YS+  +    +  +  +  +N I+WNA++  +   G+ E  L+ +  M  +  +  D
Sbjct: 464 ITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPD 523

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           + T  ++      +   K G Q+     K+G   +  V N ++ MY+ CG I +A KVF 
Sbjct: 524 WVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFD 583

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            ++ +D+VSWN+++ G + HG  ++A+++F+ + K   KPD  +++ VLS C H+G + +
Sbjct: 584 FLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQE 643

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G  YF +M+   ++ P   EH++ +V LLGRAG L EA+  I+ M   P   V+ ALLSA
Sbjct: 644 GKFYFDMMKRAHNISPG-LEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSA 702

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++HGN E+A  +AK V +L   D   Y+L++ +       DD+  IR LM ++GI+K P
Sbjct: 703 CKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNP 762

Query: 302 GYSWV 306
           GYSW+
Sbjct: 763 GYSWM 767



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 102/203 (50%), Gaps = 4/203 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     + + V++S+  RN ++W  +I+GF   G   ++++ F++MR   + +D F +
Sbjct: 335 YAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFAL 394

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++           G+Q+H+L  K G    V V N L+ MYA C  +  A  +F  M+E
Sbjct: 395 ATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNE 454

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+VSW S++   +  G   +A + F+ M +  +     T+  +L A    G  + GL+ 
Sbjct: 455 KDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDGLRM 510

Query: 186 FYLMRNDASLEPPRAEHYTAIVG 208
           + +M ++  + P    + T   G
Sbjct: 511 YKVMLSEEYVRPDWVTYVTLFKG 533



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 84/158 (53%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++ S+  R+ +SWN +++     G   +AL    +M+  G+ +D  T TS + A   +S
Sbjct: 245 ELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLS 304

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             + GKQ+HA + +     + +V + LV +YA  G   +A  VF+S+ +R+ V+W  L+ 
Sbjct: 305 SLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLIS 364

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
           G   +G   E+V+LF QM+   +  D      ++S CC
Sbjct: 365 GFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCC 402



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 112/254 (44%), Gaps = 36/254 (14%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-IDYFT 64
           Y++     D   ++  +  R+  SWN +++G+        +L+ F  M ++G    + FT
Sbjct: 101 YAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFT 160

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF---- 120
           +   + + G +       Q+ A++ K     +  V   LV M+  CGA++ A+++F    
Sbjct: 161 LACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIK 220

Query: 121 ---------------------------SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                                       SM ERD+VSWN ++   +  G  REA+ +   
Sbjct: 221 EPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVD 280

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGR 212
           MQ   ++ D TT+   L+AC     +  G Q +  ++RN   ++P  A   +A+V L  +
Sbjct: 281 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA---SALVELYAK 337

Query: 213 AGFLNEAESFINSM 226
           +G   EA+   NS+
Sbjct: 338 SGCFKEAKGVFNSL 351



 Score = 44.3 bits (103), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANK-VFSSMDERDLVSWNSLLLGCAHHGY 143
           H  +  +G  S VF+QN L+  Y  CGA++DA + +   +   ++++ N +L G A  G 
Sbjct: 47  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 106

Query: 144 SREAVQLFEQMQKTEI 159
             +AV+LF +M   ++
Sbjct: 107 LSDAVELFGRMPARDV 122



 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 3/125 (2%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           NV   N ++  YA  G ++DA ++F  M  RD+ SWN+L+ G         +++ F  M 
Sbjct: 90  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 149

Query: 156 KT-EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214
           ++ +  P+  T    + +C   G+    LQ   +++   S +   +E   A+V +  R G
Sbjct: 150 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDD--SEVAAALVDMFVRCG 207

Query: 215 FLNEA 219
            ++ A
Sbjct: 208 AVDLA 212


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 167/302 (55%), Gaps = 2/302 (0%)

Query: 6   YSRCDSSLDFQNVYSSV-RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
           Y++C    D  NV+  + R  N +SWNAI++         +  + + EM  +G   D  T
Sbjct: 508 YTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSIT 567

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
           IT+++G    ++    G Q+H    K G   +V V N L+ MYA CG++  A  VF S  
Sbjct: 568 ITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVFDSTQ 627

Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
             D+VSW+SL++G A  G   EA+ LF  M    ++P+  T+L  LSAC H G +++G +
Sbjct: 628 NLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSACSHIGLVEEGWR 687

Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
            +  M  +  + PP  EH++ IV LL RAG L+EAE+FI     +   + +K LL+AC+ 
Sbjct: 688 LYKSMETEHGI-PPTREHFSCIVDLLARAGCLHEAETFIQKSGLDADITAWKTLLAACKT 746

Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
           H N +IA R A  +L L P++ A  V+L N+  +   W++   +R LM   G++K PG S
Sbjct: 747 HNNVDIAERGAGNILKLDPSNSAAMVMLCNIHASAGNWEEVAKLRKLMKQMGVQKVPGQS 806

Query: 305 WV 306
           W+
Sbjct: 807 WI 808



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 5/228 (2%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVI 75
           NV++ + T++ ISW  +I G+  LG   +AL  F ++ RQ     + F   S+  A   +
Sbjct: 316 NVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSL 375

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
              + GKQ+H +  K G   NVF    L  MYA  G +  A   F  +   D+VSWN+++
Sbjct: 376 LELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAII 435

Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
              A +G + EA+  F QM    + PD  T++ +L  C     +++G Q + Y+++    
Sbjct: 436 AAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFD 495

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
            E        +++ +  +   L++A +    +SRN     + A+LSAC
Sbjct: 496 KEITVC---NSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSAC 540



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 118/270 (43%), Gaps = 33/270 (12%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y +C S  D + V+ +++  N +SW ++I+G+   G    A+  + +M ++G   D  T 
Sbjct: 204 YGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTF 263

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A  +      G+Q+HA + K  +  ++  QN L+ MY   G I  A+ VF+ +  
Sbjct: 264 GSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPT 323

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLF-EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
           +DL+SW +++ G    GY  EA+ LF + +++   +P+   F  V SAC     ++ G Q
Sbjct: 324 KDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQ 383

Query: 185 Y------FYLMRND-----------------------ASLEPPRAEHYTAIVGLLGRAGF 215
                  F L RN                          ++ P    + AI+      G 
Sbjct: 384 VHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGD 443

Query: 216 LNEAESFINSMSR---NPGPSVYKALLSAC 242
            NEA  F   M      P    Y +LL  C
Sbjct: 444 ANEAIDFFRQMIHIGLTPDSITYISLLCTC 473



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 11/181 (6%)

Query: 15  FQNVYSSVRTRNQ----------ISWNAIIAGFCNLGSGEQALKCFS-EMRQAGIDIDYF 63
           F+ +YS V+   Q          +  N+ I   C     ++AL+ F   ++ +    +  
Sbjct: 101 FRRMYSYVKPSLQPAIFSNLSKELPTNSYIIFLCKQHHYKEALEAFDFHLKNSNSHFEPS 160

Query: 64  TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
           T TS+V A          K++H  + K  Y  ++ +QN ++ MY  CG++ DA KVF +M
Sbjct: 161 TYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTM 220

Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
              ++VSW S++ G + +G + +A+ ++ QM ++   PD  TF  V+ AC  AG ID G 
Sbjct: 221 QLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGR 280

Query: 184 Q 184
           Q
Sbjct: 281 Q 281


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 100/292 (34%), Positives = 169/292 (57%), Gaps = 12/292 (4%)

Query: 26  NQISWNAIIAGFC--------NLGS---GEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
           + ++WNA+IAG          NL +   G +ALK FS++ Q+G+  D FT++S++     
Sbjct: 331 SMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSR 390

Query: 75  ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
           +   ++G+Q+HA   K G+ S+V V   L+ MY  CG+I  A+K F  M  R +++W S+
Sbjct: 391 MLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSM 450

Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
           + G + HG S++A+ +FE M    ++P+  TF+ VLSAC HAG + + L YF +M+    
Sbjct: 451 ITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALNYFEIMQKKYK 510

Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
           ++P   +HY  +V +  R G L +A +FI  M+  P   ++   ++ C+ HGN E+   +
Sbjct: 511 IKPV-MDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGNLELGFYA 569

Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           ++++L L P DP  YVLL N+  + D +DD   +R +M    + K   +SW+
Sbjct: 570 SEQLLSLKPKDPETYVLLLNMYLSADRFDDVSRVRKMMEVEKVGKLKDWSWI 621



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 111/221 (50%), Gaps = 2/221 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C +  D + V+ ++  RN ++W  ++ GF      + A+  F EM  AG     +T+
Sbjct: 109 YAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTL 168

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           ++++ A   +   K G Q HA I K   D +  V + L  +Y+ CG + DA K FS + E
Sbjct: 169 SAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIRE 228

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           ++++SW S +  C  +G   + ++LF +M   +IKP+  T    LS CC    ++ G Q 
Sbjct: 229 KNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQV 288

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
             L          R  +  +++ L  ++GF+ EA  F N M
Sbjct: 289 CSLCIKFGYESNLRVRN--SLLYLYLKSGFIVEAHRFFNRM 327



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 11/190 (5%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           YS+C    D    +S +R +N ISW + ++   + G+  + L+ F EM    I  + FT+
Sbjct: 210 YSKCGRLEDALKAFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTL 269

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
           TS +     I   + G Q+ +L  K GY+SN+ V+N L+++Y   G I +A++ F+ MD+
Sbjct: 270 TSALSQCCEIPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDD 329

Query: 126 RDLVSWNSLLLGCAHH-----------GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
             +V+WN+++ G A                 EA+++F ++ ++ +KPD  T   VLS C 
Sbjct: 330 VSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCS 389

Query: 175 HAGFIDKGLQ 184
               I++G Q
Sbjct: 390 RMLAIEQGEQ 399



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 97/202 (48%), Gaps = 14/202 (6%)

Query: 84  MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
           +H  + K G   N FV + LV +YA CG + DA +VF +M  R++V+W +L++G   +  
Sbjct: 86  VHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQ 145

Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF-YLMRNDASLEPPRAEH 202
            + A+ +F++M      P   T   VL AC     +  G Q+  Y+++     +      
Sbjct: 146 PKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVG-- 203

Query: 203 YTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALLSACQVHGNREIAVRSAKRVLD 260
            +A+  L  + G L +A   + + SR    +V  + + +SAC   G+    V+  +  ++
Sbjct: 204 -SALCSLYSKCGRLEDA---LKAFSRIREKNVISWTSAVSAC---GDNGAPVKGLRLFVE 256

Query: 261 LWPND--PAIYVLLSNVSKATD 280
           +   D  P  + L S +S+  +
Sbjct: 257 MISEDIKPNEFTLTSALSQCCE 278



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 9/174 (5%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
           I  Y++C S       +  + TR  I+W ++I GF   G  +QAL  F +M  AG+  + 
Sbjct: 420 ISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNT 479

Query: 63  FTITSIVGAI---GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
            T   ++ A    G++S      ++    +KI    + +    +V M+   G +  A   
Sbjct: 480 VTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHY--ECMVDMFVRLGRLEQALNF 537

Query: 120 FSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFLVVLS 171
              M+ E     W++ + GC  HG         EQ+    +KP D  T++++L+
Sbjct: 538 IKKMNYEPSEFIWSNFIAGCRSHGNLELGFYASEQL--LSLKPKDPETYVLLLN 589


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/288 (36%), Positives = 163/288 (56%), Gaps = 2/288 (0%)

Query: 18  VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
           ++  +  ++ + WNA+I G+ +   G++AL  F+EM+   I+ D  T+ S + A   +  
Sbjct: 268 LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGA 327

Query: 78  FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
              G  +H  I K     NV +   L+ MYA CG I  A +VF  +  R+ ++W +++ G
Sbjct: 328 LDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISG 387

Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
            A HG +  A+  F +M    + PD  TFL +LSACCH G +++G +YF  M +  +L  
Sbjct: 388 LALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLS- 446

Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
           P+ +HY+ +V LLGRAG L EAE  I SM       V+ AL  AC++HGN  +  R+A +
Sbjct: 447 PKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASK 506

Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
           +L + P+D  IYVLL+N+    + W +AG  R LM  RG+ K P  SW
Sbjct: 507 LLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPD-SW 553



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 135/328 (41%), Gaps = 73/328 (22%)

Query: 13  LDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFTITSIVG 70
           LD+  N+  + R  N  SWN  I GF +  +  +A+  +  + Q  G   D +T   +  
Sbjct: 100 LDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFK 159

Query: 71  AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS 130
           A   +S  + G ++   +  +G+DS++FV N ++ +   CG ++ A K+F     RDLVS
Sbjct: 160 ACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVS 219

Query: 131 WNSLL-----------------------------LGCAHHGYSREAVQLFE--------- 152
           WNS++                             +G A  G    A +LF+         
Sbjct: 220 WNSMINGYCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVP 279

Query: 153 ----------------------QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLM 189
                                 +MQ   I PD  T +  LSAC   G +D G+  + Y+ 
Sbjct: 280 WNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIE 339

Query: 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS--VYKALLSACQVHGN 247
           +++ SL        TA++ +  + G + +A   I      PG +   + A++S   +HGN
Sbjct: 340 KHELSLNVALG---TALIDMYAKCGKITKA---IQVFQELPGRNSLTWTAIISGLALHGN 393

Query: 248 REIAVRSAKRVLD--LWPNDPAIYVLLS 273
              A+     ++D  + P++     LLS
Sbjct: 394 AHGAIAYFSEMIDNSVMPDEVTFLGLLS 421



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 2/139 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++C        V+  +  RN ++W AII+G    G+   A+  FSEM    +  D  T 
Sbjct: 357 YAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTF 416

Query: 66  TSIVGAIGVISGFKEGKQMHA-LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
             ++ A       +EG++  + +  K      +   + +V +    G + +A ++  SM 
Sbjct: 417 LGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMP 476

Query: 125 -ERDLVSWNSLLLGCAHHG 142
            E D V W +L   C  HG
Sbjct: 477 IEADAVVWGALFFACRIHG 495


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/286 (37%), Positives = 167/286 (58%), Gaps = 2/286 (0%)

Query: 22  VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG 81
           +  +N +SW  IIAG+      E+ L+ F+ +  +G   +  T +S++ A   I+   +G
Sbjct: 408 IPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKG 467

Query: 82  KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
             +H  I K+G   ++FV   L  MYA CG I  + +VF  M E++ +SW  ++ G A  
Sbjct: 468 MNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAES 527

Query: 142 GYSREAVQLFEQMQKT-EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRA 200
           G++ E++ LFE+M++T E+ P+    L VL AC H G +DKGL YF  M     ++P + 
Sbjct: 528 GFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKP-KG 586

Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260
           +HYT +V LL R+G L EAE FI ++   P  + + ALLS C+ + + +IA R+AK++  
Sbjct: 587 KHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQ 646

Query: 261 LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
           L  N+ A YVLLSN+  +   W D  +IR LM  +G++K  G SWV
Sbjct: 647 LAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWV 692



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 31/199 (15%)

Query: 16  QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
           + ++  +  RN+ISW+A+IA +   G  E+ALK FS+M Q G   +       + A+  +
Sbjct: 270 RRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASL 329

Query: 76  SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
                G  +H  + KIG D +VF+ + L+ +Y  CG  +D   VF  + E+++V WNS++
Sbjct: 330 RALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMV 389

Query: 136 LGCAHHGYS-------------------------------REAVQLFEQMQKTEIKPDGT 164
            G + +G                                  + +++F  +  +   P+ +
Sbjct: 390 GGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKS 449

Query: 165 TFLVVLSACCHAGFIDKGL 183
           TF  VL AC     +DKG+
Sbjct: 450 TFSSVLCACASIASLDKGM 468



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 101/194 (52%), Gaps = 21/194 (10%)

Query: 3   ILTYSRCDSSL------DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA 56
           ++ Y R + S+       FQNV         +SW A I+GF   G   +ALK F  + ++
Sbjct: 128 LMKYGRVEESMWYFERNPFQNV---------VSWTAAISGFVRNGLNFEALKLFFRLLES 178

Query: 57  GIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
           G+  +  T TS+V A G +  F  G  +  L+ K G++  + V N L+ +    G I+ A
Sbjct: 179 GVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLA 238

Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCH 175
            +VF  M++RD+VSW ++L      G  REA ++F++M ++ EI     ++  +++    
Sbjct: 239 RRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEI-----SWSAMIARYSQ 293

Query: 176 AGFIDKGLQYFYLM 189
           +G+ ++ L+ F  M
Sbjct: 294 SGYAEEALKLFSKM 307



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 95/251 (37%), Gaps = 77/251 (30%)

Query: 80  EGKQMHALIFKIGYDSNVFVQNRLVFMYAIC----------------------------- 110
           +G  +HA + K G+ S  ++  +L+ +Y  C                             
Sbjct: 39  QGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYV 98

Query: 111 --GAINDANKVFSSMDERDLVSWNSLLLGCAHHG--------YSR--------------- 145
             G +  A  +F  M ER+ VSW++L+ G   +G        + R               
Sbjct: 99  QWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISG 158

Query: 146 --------EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
                   EA++LF ++ ++ ++P+  TF  V+ AC   G    G+    L+        
Sbjct: 159 FVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAG---- 214

Query: 198 PRAEHYTAI----VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
              EHY ++    + L  R G ++ A    + M +    S + A+L A    G+    +R
Sbjct: 215 --FEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVS-WTAILDAYVETGD----LR 267

Query: 254 SAKRVLDLWPN 264
            A+R+ D  P 
Sbjct: 268 EARRIFDEMPE 278


>gi|302805077|ref|XP_002984290.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
 gi|300148139|gb|EFJ14800.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
          Length = 448

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 169/301 (56%), Gaps = 2/301 (0%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y RC S  + + V+  +  ++ I+WNAI+  +   G G++AL+ F  M+Q G+     T 
Sbjct: 21  YGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEALEIFQRMQQEGVKTGSATF 80

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            S++ A    S    G+ +H  +   G D  + V   LV MYA CG + +A +VF  M+ 
Sbjct: 81  ISVLEACASTSALALGRVIHQNLVANGLDRELIVATALVNMYAKCGKLVEAREVFDQMEG 140

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
            D+V+W +++ G A HG+  E+  L  +M+   IKP+  TFL ++ AC H+G++D+    
Sbjct: 141 MDVVAWTAIVAGSAQHGHIEESKDLMRRMELEGIKPNNVTFLSLVFACSHSGYLDEARDC 200

Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
           F  M +      P  EH+  ++ LLGR G L EA+  I++M   PG + +  +LSAC++ 
Sbjct: 201 FIAMADHGFF--PLPEHFRCVIDLLGRGGRLEEAQEVIDTMPFEPGLTAWLTMLSACRLQ 258

Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
            +   A  +A++  ++ P  P+ Y+L+SN+  A + WDD   +R LM  RG++K+PG S 
Sbjct: 259 KDVLRAEIAAEKCYEIEPTRPSAYLLMSNLYAALERWDDVKKVRRLMERRGVKKEPGLSC 318

Query: 306 V 306
           +
Sbjct: 319 I 319



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 12/222 (5%)

Query: 87  LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSRE 146
           ++ K+G ++   V   LV MY  C ++ +A  VF  +  +D ++WN+++   A  GY +E
Sbjct: 1   MVEKVGLEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKE 60

Query: 147 AVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQYFYLMRNDASLEPPRAEHYTA 205
           A+++F++MQ+  +K    TF+ VL AC     +  G + +  L+ N    E   A   TA
Sbjct: 61  ALEIFQRMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVANGLDRELIVA---TA 117

Query: 206 IVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALLSACQVHGNREIAVRSAKRVLDLWP 263
           +V +  + G L EA    + M    G  V  + A+++    HG+ E + +   R ++L  
Sbjct: 118 LVNMYAKCGKLVEAREVFDQME---GMDVVAWTAIVAGSAQHGHIEES-KDLMRRMELEG 173

Query: 264 NDPAIYVLLSNVSKATDC--WDDAGDIRTLMYNRGIRKKPGY 303
             P     LS V   +     D+A D    M + G    P +
Sbjct: 174 IKPNNVTFLSLVFACSHSGYLDEARDCFIAMADHGFFPLPEH 215


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 174/305 (57%), Gaps = 2/305 (0%)

Query: 3   ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
           I  YS+  +    +  +  +  +N I+WNA++  +   G+ E  L+ +  M  +  +  D
Sbjct: 444 ITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPD 503

Query: 62  YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
           + T  ++      +   K G Q+     K+G   +  V N ++ MY+ CG I +A KVF 
Sbjct: 504 WVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFD 563

Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
            ++ +D+VSWN+++ G + HG  ++A+++F+ + K   KPD  +++ VLS C H+G + +
Sbjct: 564 FLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQE 623

Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
           G  YF +M+   ++ P   EH++ +V LLGRAG L EA+  I+ M   P   V+ ALLSA
Sbjct: 624 GKFYFDMMKRAHNISPG-LEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSA 682

Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
           C++HGN E+A  +AK V +L   D   Y+L++ +       DD+  IR LM ++GI+K P
Sbjct: 683 CKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNP 742

Query: 302 GYSWV 306
           GYSW+
Sbjct: 743 GYSWM 747



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 102/203 (50%), Gaps = 4/203 (1%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
           Y++     + + V++S+  RN ++W  +I+GF   G   ++++ F++MR   + +D F +
Sbjct: 315 YAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFAL 374

Query: 66  TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
            +++           G+Q+H+L  K G    V V N L+ MYA C  +  A  +F  M+E
Sbjct: 375 ATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNE 434

Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
           +D+VSW S++   +  G   +A + F+ M +  +     T+  +L A    G  + GL+ 
Sbjct: 435 KDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDGLRM 490

Query: 186 FYLMRNDASLEPPRAEHYTAIVG 208
           + +M ++  + P    + T   G
Sbjct: 491 YKVMLSEEYVRPDWVTYVTLFKG 513



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 84/158 (53%)

Query: 17  NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
            ++ S+  R+ +SWN +++     G   +AL    +M+  G+ +D  T TS + A   +S
Sbjct: 225 ELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLS 284

Query: 77  GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
             + GKQ+HA + +     + +V + LV +YA  G   +A  VF+S+ +R+ V+W  L+ 
Sbjct: 285 SLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLIS 344

Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
           G   +G   E+V+LF QM+   +  D      ++S CC
Sbjct: 345 GFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCC 382



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 112/254 (44%), Gaps = 36/254 (14%)

Query: 6   YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-IDYFT 64
           Y++     D   ++  +  R+  SWN +++G+        +L+ F  M ++G    + FT
Sbjct: 81  YAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFT 140

Query: 65  ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF---- 120
           +   + + G +       Q+ A++ K     +  V   LV M+  CGA++ A+++F    
Sbjct: 141 LACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIK 200

Query: 121 ---------------------------SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
                                       SM ERD+VSWN ++   +  G  REA+ +   
Sbjct: 201 EPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVD 260

Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGR 212
           MQ   ++ D TT+   L+AC     +  G Q +  ++RN   ++P  A   +A+V L  +
Sbjct: 261 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA---SALVELYAK 317

Query: 213 AGFLNEAESFINSM 226
           +G   EA+   NS+
Sbjct: 318 SGCFKEAKGVFNSL 331



 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 85  HALIFKIGYDSNVFVQNRLVFMYAICGAINDANK-VFSSMDERDLVSWNSLLLGCAHHGY 143
           H  +  +G  S VF+QN L+  Y  CGA++DA + +   +   ++++ N +L G A  G 
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 86

Query: 144 SREAVQLFEQMQKTEI 159
             +AV+LF +M   ++
Sbjct: 87  LSDAVELFGRMPARDV 102



 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 3/125 (2%)

Query: 96  NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
           NV   N ++  YA  G ++DA ++F  M  RD+ SWN+L+ G         +++ F  M 
Sbjct: 70  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 129

Query: 156 KT-EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214
           ++ +  P+  T    + +C   G+    LQ   +++   S +   +E   A+V +  R G
Sbjct: 130 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDD--SEVAAALVDMFVRCG 187

Query: 215 FLNEA 219
            ++ A
Sbjct: 188 AVDLA 192


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.137    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,743,163,688
Number of Sequences: 23463169
Number of extensions: 186562805
Number of successful extensions: 488257
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8505
Number of HSP's successfully gapped in prelim test: 2469
Number of HSP's that attempted gapping in prelim test: 396364
Number of HSP's gapped (non-prelim): 47946
length of query: 306
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 164
effective length of database: 9,027,425,369
effective search space: 1480497760516
effective search space used: 1480497760516
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 76 (33.9 bits)