BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046638
         (306 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QV7|A Chain A, Crystal Structure Of Diacylglycerol Kinase Dgkb In Complex
           With Adp And Mg
 pdb|2QVL|A Chain A, Crystal Structure Of Diacylglycerol Kinase
          Length = 337

 Score = 31.2 bits (69), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 37  FCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV-ISGFKEGKQMHALIFKIGYDS 95
           F NL +G Q  +   E            + SIVG     I GF+   Q  A+  +I YD 
Sbjct: 155 FINLAAGGQLTQVSYETPS--------KLKSIVGPFAYYIKGFEXLPQXKAVDLRIEYDG 206

Query: 96  NVFVQNRLVFMYAIC 110
           NVF    L+F   + 
Sbjct: 207 NVFQGEALLFFLGLT 221


>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 31.2 bits (69), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 11/131 (8%)

Query: 177 GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYK 236
           G ID  +  +   R    L+P   + Y  +   L   G + EAE   N+  R   P+   
Sbjct: 251 GLIDLAIDTY---RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR-LCPTHAD 306

Query: 237 ALLSACQV---HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293
           +L +   +    GN E AVR  ++ L+++P   A +  L++V +      +A     + Y
Sbjct: 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA----LMHY 362

Query: 294 NRGIRKKPGYS 304
              IR  P ++
Sbjct: 363 KEAIRISPTFA 373


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,036,281
Number of Sequences: 62578
Number of extensions: 345712
Number of successful extensions: 741
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 2
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)