BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046638
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 255 bits (652), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 1/304 (0%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I Y +C +++ +++R +SWNA+I GF G AL FS+MR + D
Sbjct: 379 ISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDT 438
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
FT S++ AI +S K +H ++ + D NVFV LV MYA CGAI A +F
Sbjct: 439 FTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDM 498
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
M ER + +WN+++ G HG+ + A++LFE+MQK IKP+G TFL V+SAC H+G ++ G
Sbjct: 499 MSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAG 558
Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
L+ FY+M+ + S+E +HY A+V LLGRAG LNEA FI M P +VY A+L AC
Sbjct: 559 LKCFYMMKENYSIELS-MDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC 617
Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
Q+H N A ++A+R+ +L P+D +VLL+N+ +A W+ G +R M +G+RK PG
Sbjct: 618 QIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPG 677
Query: 303 YSWV 306
S V
Sbjct: 678 CSMV 681
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 96/177 (54%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++C + + V+ + R+ +SWN I+AG+ G AL+ M + + + TI
Sbjct: 180 YAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITI 239
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
S++ A+ + GK++H + G+DS V + LV MYA CG++ A ++F M E
Sbjct: 240 VSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLE 299
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
R++VSWNS++ + +EA+ +F++M +KP + + L AC G +++G
Sbjct: 300 RNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 114/224 (50%), Gaps = 8/224 (3%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
+ R S + V+ + ++ + ++ ++ GF + ++AL+ F MR ++ +
Sbjct: 79 FCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNF 138
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
T ++ G + + GK++H L+ K G+ ++F L MYA C +N+A KVF M E
Sbjct: 139 TYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPE 198
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
RDLVSWN+++ G + +G +R A+++ + M + +KP T + VL A I G +
Sbjct: 199 RDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEI 258
Query: 185 YFYLMRN--DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
+ Y MR+ D+ + TA+V + + G L A + M
Sbjct: 259 HGYAMRSGFDSLVNIS-----TALVDMYAKCGSLETARQLFDGM 297
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 91/167 (54%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++C S + ++ + RN +SWN++I + + ++A+ F +M G+ ++
Sbjct: 281 YAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSV 340
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
+ A + + G+ +H L ++G D NV V N L+ MY C ++ A +F +
Sbjct: 341 MGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQS 400
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
R LVSWN+++LG A +G +A+ F QM+ +KPD T++ V++A
Sbjct: 401 RTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITA 447
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%)
Query: 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
S KE +Q+ L+FK G F Q +LV ++ G++++A +VF +D + V ++++L
Sbjct: 48 SSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTML 107
Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
G A +A+Q F +M+ +++P F +L C
Sbjct: 108 KGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVC 145
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 249 bits (635), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 185/304 (60%), Gaps = 1/304 (0%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I Y++C + +N++ + R+ +SW A+IAG+ G +AL+ F +M + G ++
Sbjct: 350 ITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNR 409
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
+ +S + + + GKQ+H + K GY++ FV N L+ MY CG+I +AN +F
Sbjct: 410 SSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKE 469
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
M +D+VSWN+++ G + HG+ A++ FE M++ +KPD T + VLSAC H G +DKG
Sbjct: 470 MAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKG 529
Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
QYFY M D + P ++HY +V LLGRAG L +A + + +M P +++ LL A
Sbjct: 530 RQYFYTMTQDYGV-MPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGAS 588
Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
+VHGN E+A +A ++ + P + +YVLLSN+ ++ W D G +R M ++G++K PG
Sbjct: 589 RVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPG 648
Query: 303 YSWV 306
YSW+
Sbjct: 649 YSWI 652
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 40/295 (13%)
Query: 13 LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
++ + + S+ R+ +SWN II G+ G ++A + F E D FT T++V
Sbjct: 236 VEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ----DVFTWTAMVSGY 291
Query: 73 -------------------------GVISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVF 105
+++G+ +G++M +F + NV N ++
Sbjct: 292 IQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMIT 351
Query: 106 MYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTT 165
YA CG I++A +F M +RD VSW +++ G + G+S EA++LF QM++ + + ++
Sbjct: 352 GYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSS 411
Query: 166 FLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN 224
F LS C ++ G Q + L++ A++ + + G + EA
Sbjct: 412 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVG---NALLLMYCKCGSIEEANDLFK 468
Query: 225 SMSRNPGPSVYKALLSACQVHGNREIAVR---SAKRVLDLWPNDPAIYVLLSNVS 276
M+ S + +++ HG E+A+R S KR L P+D + +LS S
Sbjct: 469 EMAGKDIVS-WNTMIAGYSRHGFGEVALRFFESMKRE-GLKPDDATMVAVLSACS 521
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 8 RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
RC+ +L V+ + + +S+N +I+G+ G E A K F EM + + ++
Sbjct: 79 RCNEAL---RVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDL------VSW 129
Query: 68 IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
V G + GK +F+I + +V N ++ YA G ++DA VF M E++
Sbjct: 130 NVMIKGYVRNRNLGKARE--LFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKN 187
Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
VSWN+LL + EA LF+ + + +V C GF+ K
Sbjct: 188 DVSWNALLSAYVQNSKMEEACMLFKSRE---------NWALVSWNCLLGGFVKK 232
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 85/183 (46%), Gaps = 18/183 (9%)
Query: 16 QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
+ ++ + R+ SWN +++G+ G + A F M + D+ + + +
Sbjct: 146 RELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKN-DVSWNAL---------L 195
Query: 76 SGFKEGKQMHA--LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
S + + +M ++FK + + N L+ + I +A + F SM+ RD+VSWN+
Sbjct: 196 SAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNT 255
Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RN 191
++ G A G EA QLF++ ++ T+ ++S +++ + F M RN
Sbjct: 256 IITGYAQSGKIDEARQLFDESPVQDV----FTWTAMVSGYIQNRMVEEARELFDKMPERN 311
Query: 192 DAS 194
+ S
Sbjct: 312 EVS 314
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 14/155 (9%)
Query: 88 IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
+ K G DS++ N + Y G N+A +VF M VS+N ++ G +G A
Sbjct: 56 LLKCG-DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELA 114
Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAE-HYTAI 206
+LF++M + ++ ++ V++ + K + F +M P R + +
Sbjct: 115 RKLFDEMPERDL----VSWNVMIKGYVRNRNLGKARELFEIM-------PERDVCSWNTM 163
Query: 207 VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
+ + G +++A S + M S + ALLSA
Sbjct: 164 LSGYAQNGCVDDARSVFDRMPEKNDVS-WNALLSA 197
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 248 bits (634), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 180/304 (59%), Gaps = 1/304 (0%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
+ YSRC + + + I+WNA+++GF G+ E+AL+ F M + GID +
Sbjct: 633 VTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNN 692
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
FT S V A + K+GKQ+HA+I K GYDS V N L+ MYA CG+I+DA K F
Sbjct: 693 FTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLE 752
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
+ ++ VSWN+++ + HG+ EA+ F+QM + ++P+ T + VLSAC H G +DKG
Sbjct: 753 VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 812
Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
+ YF M ++ L P+ EHY +V +L RAG L+ A+ FI M P V++ LLSAC
Sbjct: 813 IAYFESMNSEYGL-SPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSAC 871
Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
VH N EI +A +L+L P D A YVLLSN+ + WD R M +G++K+PG
Sbjct: 872 VVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPG 931
Query: 303 YSWV 306
SW+
Sbjct: 932 QSWI 935
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 96/169 (56%)
Query: 16 QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
+ V+ +R ++ SW A+I+G +A++ F +M GI + +S++ A I
Sbjct: 242 RRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKI 301
Query: 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
+ G+Q+H L+ K+G+ S+ +V N LV +Y G + A +FS+M +RD V++N+L+
Sbjct: 302 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLI 361
Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
G + GY +A++LF++M ++PD T ++ AC G + +G Q
Sbjct: 362 NGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQ 410
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 125/255 (49%), Gaps = 7/255 (2%)
Query: 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
++ +SW +IAG+ ++AL F +M GI D +T+ V A + KEG+Q+
Sbjct: 554 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 613
Query: 85 HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
HA G+ S++ QN LV +Y+ CG I ++ F + D ++WN+L+ G G +
Sbjct: 614 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 673
Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
EA+++F +M + I + TF + A + +G Q ++ E
Sbjct: 674 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGY--DSETEVCN 731
Query: 205 AIVGLLGRAGFLNEAES-FINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL--DL 261
A++ + + G +++AE F+ ++N + A+++A HG A+ S +++ ++
Sbjct: 732 ALISMYAKCGSISDAEKQFLEVSTKNEVS--WNAIINAYSKHGFGSEALDSFDQMIHSNV 789
Query: 262 WPNDPAIYVLLSNVS 276
PN + +LS S
Sbjct: 790 RPNHVTLVGVLSACS 804
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 89/169 (52%)
Query: 16 QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
++++S++ R+ +++N +I G G GE+A++ F M G++ D T+ S+V A
Sbjct: 343 EHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSAD 402
Query: 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
G+Q+HA K+G+ SN ++ L+ +YA C I A F + ++V WN +L
Sbjct: 403 GTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVML 462
Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
+ R + ++F QMQ EI P+ T+ +L C G ++ G Q
Sbjct: 463 VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQ 511
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 119/258 (46%), Gaps = 13/258 (5%)
Query: 6 YSRC---DSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
Y++C +++LD+ + N + WN ++ + L + + F +M+ I +
Sbjct: 434 YAKCADIETALDY---FLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 490
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
+T SI+ + + G+Q+H+ I K + N +V + L+ MYA G ++ A +
Sbjct: 491 YTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIR 550
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
+D+VSW +++ G + + +A+ F QM I+ D +SAC + +G
Sbjct: 551 FAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEG 610
Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV-YKALLS 240
Q + + S + P A+V L R G + ES++ G ++ + AL+S
Sbjct: 611 QQIHAQACVSGFSSDLP---FQNALVTLYSRCGKIE--ESYLAFEQTEAGDNIAWNALVS 665
Query: 241 ACQVHGNREIAVRSAKRV 258
Q GN E A+R R+
Sbjct: 666 GFQQSGNNEEALRVFVRM 683
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 93/238 (39%), Gaps = 59/238 (24%)
Query: 70 GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
G + EG+++H+ I K+G DSN + +L Y G + A KVF M ER +
Sbjct: 93 GCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIF 152
Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC------------CHAG 177
+WN ++ A E LF +M + P+ TF VL AC HA
Sbjct: 153 TWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHAR 212
Query: 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE---------------SF 222
+ +GL R+ + P ++ L R GF++ A +
Sbjct: 213 ILYQGL------RDSTVVCNP-------LIDLYSRNGFVDLARRVFDGLRLKDHSSWVAM 259
Query: 223 INSMSRN-------------------PGPSVYKALLSACQVHGNREIAVRSAKRVLDL 261
I+ +S+N P P + ++LSAC+ + EI + VL L
Sbjct: 260 ISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 317
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 8/244 (3%)
Query: 18 VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI-GVIS 76
V+ + R +WN +I + + F M + + T + ++ A G
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 201
Query: 77 GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
F +Q+HA I G + V N L+ +Y+ G ++ A +VF + +D SW +++
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 261
Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE 196
G + + EA++LF M I P F VLSAC ++ G Q L+
Sbjct: 262 GLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF-- 319
Query: 197 PPRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
++ Y A+V L G L AE ++MS+ + Y L++ G E A+
Sbjct: 320 --SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVT-YNTLINGLSQCGYGEKAMEL 376
Query: 255 AKRV 258
KR+
Sbjct: 377 FKRM 380
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 248 bits (633), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 183/301 (60%), Gaps = 2/301 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y+R D Q V+ ++ +RN +SWNA+IAG E+AL+ F M + G +F+
Sbjct: 206 YTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSY 265
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
S+ GA ++GK +HA + K G F N L+ MYA G+I+DA K+F + +
Sbjct: 266 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 325
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
RD+VSWNSLL A HG+ +EAV FE+M++ I+P+ +FL VL+AC H+G +D+G Y
Sbjct: 326 RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY 385
Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
+ LM+ D + P A HY +V LLGRAG LN A FI M P +++KALL+AC++H
Sbjct: 386 YELMKKDGIV--PEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH 443
Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
N E+ +A+ V +L P+DP +V+L N+ + W+DA +R M G++K+P SW
Sbjct: 444 KNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSW 503
Query: 306 V 306
V
Sbjct: 504 V 504
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 150/295 (50%), Gaps = 8/295 (2%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++C S + + V+ + R+ ++W +I+G+ AL F++M + G + FT+
Sbjct: 105 YAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTL 164
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
+S++ A G Q+H K G+DSNV V + L+ +Y G ++DA VF +++
Sbjct: 165 SSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALES 224
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG-LQ 184
R+ VSWN+L+ G A + +A++LF+ M + +P ++ + AC GF+++G
Sbjct: 225 RNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWV 284
Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
+ Y++++ L A ++ + ++G +++A + +++ S + +LL+A
Sbjct: 285 HAYMIKSGEKLV---AFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS-WNSLLTAYAQ 340
Query: 245 HGNREIAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297
HG + AV R + + PN+ + +L+ S + D+ LM GI
Sbjct: 341 HGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSH-SGLLDEGWHYYELMKKDGI 394
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 32/199 (16%)
Query: 80 EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
+G+ +HA I + + ++ + N L+ MYA CG++ +A KVF M +RD V+W +L+ G +
Sbjct: 78 QGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYS 137
Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA-------CC-----------------H 175
H +A+ F QM + P+ T V+ A CC H
Sbjct: 138 QHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVH 197
Query: 176 AGFIDKGLQYFYLMRNDA-----SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN- 229
G L Y + +DA +LE + A++ R +A M R+
Sbjct: 198 VGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDG 257
Query: 230 --PGPSVYKALLSACQVHG 246
P Y +L AC G
Sbjct: 258 FRPSHFSYASLFGACSSTG 276
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 179/301 (59%), Gaps = 1/301 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y +C Q + S+ + ++W +I+G G E+A FS+MR G+ D FTI
Sbjct: 562 YVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTI 621
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
++ A ++ ++G+Q+HA K+ ++ FV LV MYA CG+I+DA +F ++
Sbjct: 622 ATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEM 681
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
++ +WN++L+G A HG +E +QLF+QM+ IKPD TF+ VLSAC H+G + + ++
Sbjct: 682 MNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKH 741
Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
M D ++ P EHY+ + LGRAG + +AE+ I SMS S+Y+ LL+AC+V
Sbjct: 742 MRSMHGDYGIK-PEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQ 800
Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
G+ E R A ++L+L P D + YVLLSN+ A WD+ RT+M ++K PG+SW
Sbjct: 801 GDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSW 860
Query: 306 V 306
+
Sbjct: 861 I 861
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 134/276 (48%), Gaps = 7/276 (2%)
Query: 28 ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
++WNA++AG+ G + LK F+ M + G D FT+ ++ G + +GKQ+HA
Sbjct: 483 VAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAY 542
Query: 88 IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
K GYD +++V + ++ MY CG ++ A F S+ D V+W +++ GC +G A
Sbjct: 543 AIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERA 602
Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPPRAEHYTAI 206
+F QM+ + PD T + A +++G Q + ++ + + +P T++
Sbjct: 603 FHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVG---TSL 659
Query: 207 VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV--LDLWPN 264
V + + G +++A + + + A+L HG + ++ K++ L + P+
Sbjct: 660 VDMYAKCGSIDDAYCLFKRIEM-MNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPD 718
Query: 265 DPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
+LS S + + +R++ + GI+ +
Sbjct: 719 KVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPE 754
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 75/142 (52%)
Query: 31 NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
N ++ + + G LKCF++M ++ ++ D T ++ + G+Q+H + K
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343
Query: 91 IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
+G D + V N L+ MY A VF +M ERDL+SWNS++ G A +G EAV L
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403
Query: 151 FEQMQKTEIKPDGTTFLVVLSA 172
F Q+ + +KPD T VL A
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKA 425
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 131/270 (48%), Gaps = 13/270 (4%)
Query: 16 QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
+ V+ ++ R+ ISWN++IAG G +A+ F ++ + G+ D +T+TS++ A +
Sbjct: 370 RTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSL 429
Query: 76 -SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134
G KQ+H KI S+ FV L+ Y+ + +A +F + DLV+WN++
Sbjct: 430 PEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHN-FDLVAWNAM 488
Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDA 193
+ G + ++LF M K + D T V C I++G Q + Y +++
Sbjct: 489 MAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGY 548
Query: 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA-- 251
L+ + + I+ + + G ++ A+ +S+ P + ++S C +G E A
Sbjct: 549 DLDLWVS---SGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGCIENGEEERAFH 604
Query: 252 VRSAKRVLDLWPNDPAIYVLLSNVSKATDC 281
V S R++ + P++ I L +KA+ C
Sbjct: 605 VFSQMRLMGVLPDEFTIATL----AKASSC 630
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 7/170 (4%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGF-----CNLGSGEQALKCFSEMRQAG 57
I YS+C S + V+ + R+ +SWN+I+A + C + + +QA F +RQ
Sbjct: 81 ISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDV 140
Query: 58 IDIDYFTITSIVGAIGVISGFK-EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116
+ T++ ++ + + SG+ + H KIG D + FV LV +Y G + +
Sbjct: 141 VYTSRMTLSPML-KLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEG 199
Query: 117 NKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166
+F M RD+V WN +L G+ EA+ L + + P+ T
Sbjct: 200 KVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 81 GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
GK HA I + F+ N L+ MY+ CG++ A +VF M +RDLVSWNS+L A
Sbjct: 58 GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQ 117
Query: 141 HGYS-----REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
++A LF +++ + T +L C H+G++
Sbjct: 118 SSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 161
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 234 bits (596), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 176/289 (60%), Gaps = 1/289 (0%)
Query: 18 VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
++ ++ +N +SW +I+G G GE+ LK FS M++ G + + + + + V+
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432
Query: 78 FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
+ G+Q HA + KIG+DS++ N L+ MYA CG + +A +VF +M D VSWN+L+
Sbjct: 433 YCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAA 492
Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
HG+ EAV ++E+M K I+PD T L VL+AC HAG +D+G +YF M + P
Sbjct: 493 LGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRI-P 551
Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
P A+HY ++ LL R+G ++AES I S+ P +++ALLS C+VHGN E+ + +A +
Sbjct: 552 PGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADK 611
Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
+ L P Y+LLSN+ AT W++ +R LM +RG++K+ SW+
Sbjct: 612 LFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWI 660
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 97/170 (57%), Gaps = 6/170 (3%)
Query: 28 ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
+++NA+I+G+ N G ++AL+ M +GI++D FT S++ A + GKQ+HA
Sbjct: 252 VAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAY 311
Query: 88 IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
+ + D + N LV +Y CG ++A +F M +DLVSWN+LL G G+ EA
Sbjct: 312 VLR-REDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEA 370
Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
+F++M++ I ++++++S GF ++GL+ F M+ + EP
Sbjct: 371 KLIFKEMKEKNI----LSWMIMISGLAENGFGEEGLKLFSCMKREG-FEP 415
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 116/262 (44%), Gaps = 47/262 (17%)
Query: 20 SSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS-GF 78
+ V R+ + +NA+I GF + G A+ F +M+ G D FT S++ + +++
Sbjct: 106 APVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDE 165
Query: 79 KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA----INDANKVFSSMDERD------- 127
K+ Q HA K G V N LV +Y+ C + ++ A KVF + E+D
Sbjct: 166 KQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTM 225
Query: 128 -------------------------LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
LV++N+++ G + G+ +EA+++ +M + I+ D
Sbjct: 226 MTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELD 285
Query: 163 GTTFLVVLSACCHAGFIDKGLQY--FYLMRNDASLEPPRAEHY-TAIVGLLGRAGFLNEA 219
T+ V+ AC AG + G Q + L R D S H+ ++V L + G +EA
Sbjct: 286 EFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSF------HFDNSLVSLYYKCGKFDEA 339
Query: 220 ESFINSMSRNPGPSVYKALLSA 241
+ M S + ALLS
Sbjct: 340 RAIFEKMPAKDLVS-WNALLSG 360
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 6/170 (3%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I Y++C + + V+ ++ + +SWNA+IA G G +A+ + EM + GI D
Sbjct: 459 ITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDR 518
Query: 63 FTITSIVGAIGVISGFKEGKQMH---ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
T+ +++ A +G++ +++I ++ + RL+ + G +DA V
Sbjct: 519 ITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYA--RLIDLLCRSGKFSDAESV 576
Query: 120 FSSMDERDLVS-WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
S+ + W +LL GC HG + +++ + DGT L+
Sbjct: 577 IESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLL 626
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 228 bits (581), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 112/295 (37%), Positives = 177/295 (60%), Gaps = 7/295 (2%)
Query: 18 VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
+++ + RN +SWNA+IAG+ G E+AL F +++ + +++ +I+ A ++
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAE 401
Query: 78 FKEGKQMHALIFKIGY------DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
G Q H + K G+ + ++FV N L+ MY CG + + VF M ERD VSW
Sbjct: 402 LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSW 461
Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
N++++G A +GY EA++LF +M ++ KPD T + VLSAC HAGF+++G YF M
Sbjct: 462 NAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTR 521
Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251
D + P R +HYT +V LLGRAGFL EA+S I M P ++ +LL+AC+VH N +
Sbjct: 522 DFGVAPLR-DHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLG 580
Query: 252 VRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
A+++L++ P++ YVLLSN+ W+D ++R M G+ K+PG SW+
Sbjct: 581 KYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWI 635
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 118/216 (54%), Gaps = 13/216 (6%)
Query: 17 NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
+++ S+ R+Q +WN++++GF E+AL F+ M + G ++ ++ S++ A ++
Sbjct: 107 SLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLN 166
Query: 77 GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
+G Q+H+LI K + S+V++ + LV MY+ CG +NDA +VF M +R++VSWNSL+
Sbjct: 167 DMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLIT 226
Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF------YLMR 190
+G + EA+ +F+ M ++ ++PD T V+SAC I G + +R
Sbjct: 227 CFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLR 286
Query: 191 NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
ND L A V + + + EA +SM
Sbjct: 287 NDIILS-------NAFVDMYAKCSRIKEARFIFDSM 315
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 32/211 (15%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
YS+C + D Q V+ + RN +SWN++I F G +AL F M ++ ++ D T+
Sbjct: 197 YSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTL 256
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSSMD 124
S++ A +S K G+++H + K N + + N V MYA C I +A +F SM
Sbjct: 257 ASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316
Query: 125 -------------------------------ERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
ER++VSWN+L+ G +G + EA+ LF
Sbjct: 317 IRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCL 376
Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
+++ + P +F +L AC + G+Q
Sbjct: 377 LKRESVCPTHYSFANILKACADLAELHLGMQ 407
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 37/178 (20%)
Query: 82 KQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND-------------------------- 115
+ +HA + K G+ + +F+QNRL+ Y+ CG++ D
Sbjct: 40 RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99
Query: 116 -----ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
A+ +F SM ERD +WNS++ G A H EA+ F M K + +F VL
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159
Query: 171 SACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY--TAIVGLLGRAGFLNEAESFINSM 226
SAC ++KG+Q L+ P ++ Y +A+V + + G +N+A+ + M
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKS----PFLSDVYIGSALVDMYSKCGNVNDAQRVFDEM 213
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 183/304 (60%), Gaps = 3/304 (0%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I +++ D +V+ + T + I WN+II GF + AL+ F M++AG +
Sbjct: 201 IDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQ 260
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
T+TS++ A ++ + G Q H I K YD ++ + N LV MY CG++ DA +VF+
Sbjct: 261 ATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQ 318
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
M ERD+++W++++ G A +GYS+EA++LFE+M+ + KP+ T + VL AC HAG ++ G
Sbjct: 319 MKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG 378
Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
YF M+ ++P R EHY ++ LLG+AG L++A +N M P ++ LL AC
Sbjct: 379 WYYFRSMKKLYGIDPVR-EHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGAC 437
Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
+V N +A +AK+V+ L P D Y LLSN+ + WD +IRT M +RGI+K+PG
Sbjct: 438 RVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPG 497
Query: 303 YSWV 306
SW+
Sbjct: 498 CSWI 501
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 107/214 (50%), Gaps = 9/214 (4%)
Query: 14 DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
D ++ + RN ISW +I+ + ++AL+ M + + + +T +S++ +
Sbjct: 114 DAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSC- 172
Query: 74 VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
+G + + +H I K G +S+VFV++ L+ ++A G DA VF M D + WNS
Sbjct: 173 --NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNS 230
Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
++ G A + S A++LF++M++ + T VL AC ++ G+Q + ++++ D
Sbjct: 231 IIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD 290
Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
L A+V + + G L +A N M
Sbjct: 291 QDLILN-----NALVDMYCKCGSLEDALRVFNQM 319
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 87/190 (45%), Gaps = 21/190 (11%)
Query: 45 QALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLV 104
+A+K ++ G+ D T + ++ EG + ++ G+ +F+ N L+
Sbjct: 44 RAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLI 103
Query: 105 FMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164
MY +NDA+++F M +R+++SW +++ + ++A++L M + ++P+
Sbjct: 104 NMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVY 163
Query: 165 TFLVVLSAC--------CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFL 216
T+ VL +C H G I +GL+ +R +A++ + + G
Sbjct: 164 TYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVR-------------SALIDVFAKLGEP 210
Query: 217 NEAESFINSM 226
+A S + M
Sbjct: 211 EDALSVFDEM 220
>sp|Q9LU94|PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g25970
OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2
Length = 701
Score = 226 bits (575), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 174/294 (59%), Gaps = 2/294 (0%)
Query: 14 DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
D +++ S+++++ ISWN+II GF G E A+K FS +R + I +D + ++++ +
Sbjct: 360 DALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCS 419
Query: 74 VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER-DLVSWN 132
++ + G+Q+HAL K G+ SN FV + L+ MY+ CG I A K F + + V+WN
Sbjct: 420 DLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWN 479
Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
+++LG A HG + ++ LF QM +K D TF +L+AC H G I +GL+ LM
Sbjct: 480 AMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPV 539
Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
++P R EHY A V LLGRAG +N+A+ I SM NP P V K L C+ G E+A
Sbjct: 540 YKIQP-RMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMAT 598
Query: 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
+ A +L++ P D YV LS++ W++ ++ +M RG++K PG+SW+
Sbjct: 599 QVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWI 652
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 120/253 (47%), Gaps = 5/253 (1%)
Query: 3 ILTYSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
I +Y+ C S D + V+ + +++ ISWN++IAGF E A + F +M++ ++ D
Sbjct: 245 ISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETD 304
Query: 62 YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA--ICGAINDANKV 119
+T T ++ A GK +H ++ K G + N L+ MY G + DA +
Sbjct: 305 IYTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSL 364
Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
F S+ +DL+SWNS++ G A G S +AV+ F ++ +EIK D F +L +C +
Sbjct: 365 FESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATL 424
Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
G Q L + ++++ + + G + A +S + A++
Sbjct: 425 QLGQQIHALATKSGFVSNEFV--ISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMI 482
Query: 240 SACQVHGNREIAV 252
HG ++++
Sbjct: 483 LGYAQHGLGQVSL 495
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 13/192 (6%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMR-QAGIDIDYFT 64
Y++C+ D + + N +SWNA+IAGF + + A M +A + +D T
Sbjct: 146 YAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGT 205
Query: 65 ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM- 123
++ + KQ+HA + K+G + + N ++ YA CG+++DA +VF +
Sbjct: 206 FAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLG 265
Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC--------- 174
+DL+SWNS++ G + H A +LF QMQ+ ++ D T+ +LSAC
Sbjct: 266 GSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGK 325
Query: 175 --HAGFIDKGLQ 184
H I KGL+
Sbjct: 326 SLHGMVIKKGLE 337
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 12/180 (6%)
Query: 18 VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
++ + R+ +SWN +I+G+ + G E A F+ M+++G D+D ++ + ++ I +
Sbjct: 57 LFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKR 116
Query: 78 FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
F G+Q+H L+ K GY+ NV+V + LV MYA C + DA + F + E + VSWN+L+ G
Sbjct: 117 FDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAG 176
Query: 138 CAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSAC-----------CHAGFIDKGLQY 185
+ A L M+ K + D TF +L+ HA + GLQ+
Sbjct: 177 FVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQH 236
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%)
Query: 78 FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
F++ H K G S+++V NR++ Y G + AN +F M +RD VSWN+++ G
Sbjct: 16 FQKLSLTHCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISG 75
Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
G +A LF M+++ DG +F +L D G Q
Sbjct: 76 YTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQ 122
>sp|Q9MA85|PP215_ARATH Pentatricopeptide repeat-containing protein At3g05340
OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2
Length = 658
Score = 226 bits (575), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 175/301 (58%), Gaps = 1/301 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
YS+C S D ++ S +++S I+ G GS E+A++ F M QAG++ID +
Sbjct: 301 YSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVV 360
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
++++G + + GKQ+H+L+ K + N FV N L+ MY+ CG + D+ VF M +
Sbjct: 361 SAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPK 420
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
R+ VSWNS++ A HG+ A++L+E+M E+KP TFL +L AC H G IDKG +
Sbjct: 421 RNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGREL 480
Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
M+ +E PR EHYT I+ +LGRAG L EA+SFI+S+ P +++ALL AC H
Sbjct: 481 LNEMKEVHGIE-PRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSFH 539
Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
G+ E+ +A+++ P+ + ++L++N+ + W + M G+ K+ G S
Sbjct: 540 GDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGISS 599
Query: 306 V 306
+
Sbjct: 600 I 600
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 134/278 (48%), Gaps = 9/278 (3%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I +Y +C S+ + V+ + RN I+ A+I+G E L+ FS MR+ + +
Sbjct: 197 ITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNS 256
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
T S + A EG+Q+HAL++K G +S + +++ L+ MY+ CG+I DA +F S
Sbjct: 257 VTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFES 316
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
E D VS +L+G A +G EA+Q F +M + ++ D V+SA FID
Sbjct: 317 TTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDAN----VVSAVLGVSFIDNS 372
Query: 183 LQYFYLMRNDASLEPPRAEHYT--AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
L + + + ++ + + G L ++++ M + S + ++++
Sbjct: 373 LGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVS-WNSMIA 431
Query: 241 ACQVHGNREIAVRSAKRV--LDLWPNDPAIYVLLSNVS 276
A HG+ A++ + + L++ P D LL S
Sbjct: 432 AFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACS 469
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 116/259 (44%), Gaps = 14/259 (5%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++C +D ++ + R+ IS N + GF E M +G D+ T+
Sbjct: 100 YAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLGSG-GFDHATL 158
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
T ++ K +HAL GYD + V N+L+ Y CG VF M
Sbjct: 159 TIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSH 218
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
R++++ +++ G + + ++LF M++ + P+ T+L L+AC + I +G Q
Sbjct: 219 RNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQI 278
Query: 185 ----YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
+ Y + ++ +E +A++ + + G + +A + S + S+ L+
Sbjct: 279 HALLWKYGIESELCIE-------SALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVG 331
Query: 241 ACQVHGNREIAVRSAKRVL 259
Q +G+ E A++ R+L
Sbjct: 332 LAQ-NGSEEEAIQFFIRML 349
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 97 VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156
+ V N L+ +YA CG + DA K+F M RD++S N + G + + L ++M
Sbjct: 90 LVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLG 149
Query: 157 TEIKPDGTTFLVVLSAC 173
+ D T +VLS C
Sbjct: 150 SG-GFDHATLTIVLSVC 165
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 177/291 (60%), Gaps = 2/291 (0%)
Query: 17 NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI- 75
V+S + ++ ++W+A++AG+ G E A+K F E+ + GI + FT +SI+
Sbjct: 449 KVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATN 508
Query: 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
+ +GKQ H K DS++ V + L+ MYA G I A +VF E+DLVSWNS++
Sbjct: 509 ASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMI 568
Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
G A HG + +A+ +F++M+K ++K DG TF+ V +AC HAG +++G +YF +M D +
Sbjct: 569 SGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKI 628
Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
P + EH + +V L RAG L +A I +M G ++++ +L+AC+VH E+ +A
Sbjct: 629 APTK-EHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAA 687
Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
++++ + P D A YVLLSN+ + W + +R LM R ++K+PGYSW+
Sbjct: 688 EKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWI 738
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 101/172 (58%), Gaps = 5/172 (2%)
Query: 3 ILTYSRCDSSLDFQNVYSSVR-TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
++ YS+C + LD ++ + N +SW A+I+GF E+A+ FSEM++ G+ +
Sbjct: 337 MVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPN 396
Query: 62 YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
FT + I+ A+ VIS ++HA + K Y+ + V L+ Y G + +A KVFS
Sbjct: 397 EFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFS 452
Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
+D++D+V+W+++L G A G + A+++F ++ K IKP+ TF +L+ C
Sbjct: 453 GIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVC 504
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 86/171 (50%)
Query: 5 TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
TY + + D + V+ ++ RN ++W +I+G+ ++ L F M+ G + FT
Sbjct: 137 TYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFT 196
Query: 65 ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
+ +G + G Q+H ++ K G D + V N L+ +Y CG + A +F +
Sbjct: 197 FAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTE 256
Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
+ +V+WNS++ G A +G EA+ +F M+ ++ ++F V+ C +
Sbjct: 257 VKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCAN 307
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 82/169 (48%)
Query: 16 QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
N++ R++ S+ +++ GF G ++A + F + + G+++D +S++ +
Sbjct: 47 HNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATL 106
Query: 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
G+Q+H K G+ +V V LV Y D KVF M ER++V+W +L+
Sbjct: 107 CDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLI 166
Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
G A + + E + LF +MQ +P+ TF L G +GLQ
Sbjct: 167 SGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ 215
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 88/168 (52%), Gaps = 1/168 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y +C + + ++ ++ ++WN++I+G+ G +AL F MR + + +
Sbjct: 239 YLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSF 298
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD- 124
S++ + + +Q+H + K G+ + ++ L+ Y+ C A+ DA ++F +
Sbjct: 299 ASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGC 358
Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
++VSW +++ G + EAV LF +M++ ++P+ T+ V+L+A
Sbjct: 359 VGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA 406
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 73/158 (46%), Gaps = 4/158 (2%)
Query: 16 QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
+ V+ R ++ +SWN++I+G+ G +AL F EM++ + +D T + A
Sbjct: 550 EEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHA 609
Query: 76 SGFKEGKQMHALIFKIGYDSNVFVQNR-LVFMYAICGAINDANKVFSSM-DERDLVSWNS 133
+EG++ ++ + + N +V +Y+ G + A KV +M + W +
Sbjct: 610 GLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRT 669
Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
+L C H + E++ +KP+ + V+LS
Sbjct: 670 ILAACRVHKKTELGRLAAEKI--IAMKPEDSAAYVLLS 705
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
+A+ +F RD S+ SLL G + G ++EA +LF + + ++ D + F VL
Sbjct: 45 NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVL 100
>sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein At5g39680
OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1
Length = 710
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 175/304 (57%), Gaps = 1/304 (0%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I Y +C L Q V+ +N I+ + S E+AL FS+M + +
Sbjct: 279 INMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNE 338
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
+T ++ +I +S K+G +H L+ K GY ++V V N LV MYA G+I DA K FS
Sbjct: 339 YTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSG 398
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
M RD+V+WN+++ GC+HHG REA++ F++M T P+ TF+ VL AC H GF+++G
Sbjct: 399 MTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEIPNRITFIGVLQACSHIGFVEQG 458
Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
L YF + ++P +HYT IVGLL +AG +AE F+ + ++ LL+AC
Sbjct: 459 LHYFNQLMKKFDVQPD-IQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRTLLNAC 517
Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
V N + + A+ ++ +PND +YVLLSN+ + W+ +R+LM NRG++K+PG
Sbjct: 518 YVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKKEPG 577
Query: 303 YSWV 306
SW+
Sbjct: 578 VSWI 581
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 1/166 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-IDYFT 64
Y +C ++ + ++ + RN +SW A++ G+ N G + LK F M +G + F
Sbjct: 79 YVKCRETVRARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFV 138
Query: 65 ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
T + + +EGKQ H K G S+ FV+N LV+MY++C +A +V +
Sbjct: 139 ATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLP 198
Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
DL ++S L G G +E + + + + + T+L L
Sbjct: 199 YCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSL 244
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 76 SGFKEGKQMHALIFKIGYDS---NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
S + G+ +HA + S + + N L+ +Y C A K+F M ER++VSW
Sbjct: 45 SYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMPERNVVSWC 104
Query: 133 SLLLGCAHHGYSREAVQLFEQMQKT-EIKPDGTTFLVVLSACCHAGFIDKGLQY 185
+++ G + G+ E ++LF+ M + E +P+ VV +C ++G I++G Q+
Sbjct: 105 AMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEEGKQF 158
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/233 (18%), Positives = 98/233 (42%), Gaps = 9/233 (3%)
Query: 30 WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
+++ ++G+ G+ ++ L + + T S + + Q+H+ +
Sbjct: 205 FSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMV 264
Query: 90 KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
+ G+++ V L+ MY CG + A +VF +++ +++ EA+
Sbjct: 265 RFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALN 324
Query: 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY---TAI 206
LF +M E+ P+ TF ++L++ + +G L+ L+ H A+
Sbjct: 325 LFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLV-----LKSGYRNHVMVGNAL 379
Query: 207 VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL 259
V + ++G + +A + M+ + ++S C HG A+ + R++
Sbjct: 380 VNMYAKSGSIEDARKAFSGMTFR-DIVTWNTMISGCSHHGLGREALEAFDRMI 431
>sp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containing protein At3g47840
OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1
Length = 706
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 179/301 (59%), Gaps = 1/301 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
YS C + + ++ +R R+ ISW+ II G+C G GE+ K FS MRQ+G F +
Sbjct: 355 YSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFAL 414
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
S++ G ++ + G+Q+HAL G + N V++ L+ MY+ CG+I +A+ +F D
Sbjct: 415 ASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDR 474
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
D+VS +++ G A HG S+EA+ LFE+ K +PD TF+ VL+AC H+G +D G Y
Sbjct: 475 DDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQLDLGFHY 534
Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
F +M+ ++ P + EHY +V LL RAG L++AE IN MS V+ LL AC+
Sbjct: 535 FNMMQETYNMRPAK-EHYGCMVDLLCRAGRLSDAEKMINEMSWKKDDVVWTTLLIACKAK 593
Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
G+ E R+A+R+L+L P V L+N+ +T ++A ++R M +G+ K+PG+S
Sbjct: 594 GDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKEPGWSS 653
Query: 306 V 306
+
Sbjct: 654 I 654
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 84/156 (53%)
Query: 18 VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
V+S + RN ++W AII G + G ++ L FSEM ++ D +T + A +
Sbjct: 165 VFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQ 224
Query: 78 FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
K GK +H + G+ + + V N L MY CG + D +F +M ERD+VSW SL++
Sbjct: 225 VKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVA 284
Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
G +AV+ F +M+ +++ P+ TF + SAC
Sbjct: 285 YKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSAC 320
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 121/252 (48%), Gaps = 13/252 (5%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y+ C D ++ ++ R+ +SW ++I + +G +A++ F +MR + + + T
Sbjct: 254 YTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTF 313
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
S+ A +S G+Q+H + +G + ++ V N ++ MY+ CG + A+ +F M
Sbjct: 314 ASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRC 373
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
RD++SW++++ G G+ E + F M+++ KP +LS + I+ G Q
Sbjct: 374 RDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGGRQV 433
Query: 186 FYL-----MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
L + ++++ ++++ + + G + EA R+ S+ A+++
Sbjct: 434 HALALCFGLEQNSTVR-------SSLINMYSKCGSIKEASMIFGETDRDDIVSL-TAMIN 485
Query: 241 ACQVHGNREIAV 252
HG + A+
Sbjct: 486 GYAEHGKSKEAI 497
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 2/148 (1%)
Query: 28 ISWNAIIAGFCNLGSGEQALKCFSEMR--QAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
+SW +II + + ++AL FS MR + D ++ ++ A G S G+ +H
Sbjct: 72 VSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVLKACGQSSNIAYGESLH 131
Query: 86 ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
A K S+V+V + L+ MY G I+ + +VFS M R+ V+W +++ G H G +
Sbjct: 132 AYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRYK 191
Query: 146 EAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
E + F +M ++E D TF + L AC
Sbjct: 192 EGLTYFSEMSRSEELSDTYTFAIALKAC 219
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 66/173 (38%), Gaps = 48/173 (27%)
Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE--IKPDGTTFLV 168
G + A +VF M D+VSW S++ S EA+ LF M+ + + PD + V
Sbjct: 54 GNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSV 113
Query: 169 VLSAC-----------CHA------------------------GFIDKGLQYFYLMRNDA 193
VL AC HA G IDK + F M
Sbjct: 114 VLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEM---- 169
Query: 194 SLEPPR-AEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS---VYKALLSAC 242
P R A +TAI+ L AG E ++ + MSR+ S + L AC
Sbjct: 170 ---PFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKAC 219
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 177/283 (62%), Gaps = 2/283 (0%)
Query: 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
++ + W +++G G E+ALK + EMR G+ D T +++ V+S +EG+ +
Sbjct: 695 KSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAI 754
Query: 85 HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER-DLVSWNSLLLGCAHHGY 143
H+LIF + +D + N L+ MYA CG + +++VF M R ++VSWNSL+ G A +GY
Sbjct: 755 HSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGY 814
Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY 203
+ +A+++F+ M+++ I PD TFL VL+AC HAG + G + F +M +E R +H
Sbjct: 815 AEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEA-RVDHV 873
Query: 204 TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263
+V LLGR G+L EA+ FI + + P ++ +LL AC++HG+ SA+++++L P
Sbjct: 874 ACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEP 933
Query: 264 NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
+ + YVLLSN+ + CW+ A +R +M +RG++K PGYSW+
Sbjct: 934 QNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWI 976
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 95/179 (53%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
YS+C+ V+ ++ +N + WNA+I G+ + G + ++ F +M+ +G +ID FT
Sbjct: 372 YSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTF 431
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
TS++ + G Q H++I K N+FV N LV MYA CGA+ DA ++F M +
Sbjct: 432 TSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCD 491
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
RD V+WN+++ EA LF++M I DG L AC H + +G Q
Sbjct: 492 RDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQ 550
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 120/227 (52%), Gaps = 8/227 (3%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I TY R D + ++ + + + ++WN +I+G G A++ F MR++ +
Sbjct: 268 INTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTR 327
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
T+ S++ AIG+++ G +HA K+G SN++V + LV MY+ C + A KVF +
Sbjct: 328 STLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEA 387
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
++E++ V WN+++ G AH+G S + ++LF M+ + D TF +LS C + ++ G
Sbjct: 388 LEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMG 447
Query: 183 LQYFYLMRNDASLEPPRAEHY---TAIVGLLGRAGFLNEAESFINSM 226
Q+ ++ ++ A++ A+V + + G L +A M
Sbjct: 448 SQFHSII-----IKKKLAKNLFVGNALVDMYAKCGALEDARQIFERM 489
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 139/292 (47%), Gaps = 7/292 (2%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++C + D + ++ + R+ ++WN II + + +A F M GI D +
Sbjct: 473 YAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACL 532
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
S + A + G +GKQ+H L K G D ++ + L+ MY+ CG I DA KVFSS+ E
Sbjct: 533 ASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPE 592
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
+VS N+L+ G + + EAV LF++M + P TF ++ AC + G Q+
Sbjct: 593 WSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQF 651
Query: 186 F-YLMRNDASLEPPRAEHY-TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
+ + S E E+ +++G+ + + EA + + +S ++ ++S
Sbjct: 652 HGQITKRGFSSE---GEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHS 708
Query: 244 VHGNREIAVRSAKRVL-DLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294
+G E A++ K + D D A +V + V + I +L+++
Sbjct: 709 QNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFH 760
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 117/262 (44%), Gaps = 14/262 (5%)
Query: 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
++ +WN++++ + ++G + L+ F + + I + FT + ++ + + G+Q+
Sbjct: 123 KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQI 182
Query: 85 HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
H + K+G + N + LV MYA C I+DA +VF + + + V W L G G
Sbjct: 183 HCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLP 242
Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
EAV +FE+M+ +PD F+ V++ G + F + P +
Sbjct: 243 EEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLF------GEMSSPDVVAWN 296
Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL---LSACQVHGNREIA--VRSAKRVL 259
++ G+ G A + +M ++ S L LSA + N ++ V + L
Sbjct: 297 VMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKL 356
Query: 260 DLWPNDPAIYVLLSNVSKATDC 281
L N IYV S VS + C
Sbjct: 357 GLASN---IYVGSSLVSMYSKC 375
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 5/169 (2%)
Query: 6 YSRCDSSLDFQNVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
Y++C V+ +R R N +SWN++I G+ G E ALK F MRQ+ I D T
Sbjct: 777 YAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEIT 836
Query: 65 ITSIVGAIGVISGFKEGKQM-HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
++ A +G+++ +I + G ++ V +V + G + +A+ +
Sbjct: 837 FLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQ 896
Query: 124 DER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171
+ + D W+SLL C HG E++ E++P ++ V+LS
Sbjct: 897 NLKPDARLWSSLLGACRIHGDDIRGEISAEKL--IELEPQNSSAYVLLS 943
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 81 GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
GK +H+ +G DS + N +V +YA C ++ A K F + E+D+ +WNS+L +
Sbjct: 79 GKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSS 137
Query: 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
G + ++ F + + +I P+ TF +VLS C ++ G Q
Sbjct: 138 IGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQ 181
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 174/302 (57%), Gaps = 2/302 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y+ C V+ + ++ ++WN++I GF G E+AL ++EM GI D FTI
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTI 225
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
S++ A I GK++H + K+G N+ N L+ +YA CG + +A +F M +
Sbjct: 226 VSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD 285
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQ 184
++ VSW SL++G A +G+ +EA++LF+ M+ TE + P TF+ +L AC H G + +G +
Sbjct: 286 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE 345
Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
YF MR + +E PR EH+ +V LL RAG + +A +I SM P +++ LL AC V
Sbjct: 346 YFRRMREEYKIE-PRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTV 404
Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
HG+ ++A + ++L L PN YVLLSN+ + W D IR M G++K PG+S
Sbjct: 405 HGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHS 464
Query: 305 WV 306
V
Sbjct: 465 LV 466
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 121/215 (56%), Gaps = 8/215 (3%)
Query: 16 QNVYSSV-RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIVGAIG 73
V+S + + N WN +I G+ +G+ A + EMR +G ++ D T ++ A+
Sbjct: 73 HKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVT 132
Query: 74 VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
++ + G+ +H+++ + G+ S ++VQN L+ +YA CG + A KVF M E+DLV+WNS
Sbjct: 133 TMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNS 192
Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRND 192
++ G A +G EA+ L+ +M IKPDG T + +LSAC G + G + + Y+++
Sbjct: 193 VINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVG 252
Query: 193 ASLEPPRAEHYT-AIVGLLGRAGFLNEAESFINSM 226
+ R H + ++ L R G + EA++ + M
Sbjct: 253 LT----RNLHSSNVLLDLYARCGRVEEAKTLFDEM 283
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 222 bits (565), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 181/304 (59%), Gaps = 1/304 (0%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I + + D D Q + S+ +N +S+N + G C + EQA K SE+ + + +
Sbjct: 415 ISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSA 474
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
FT S++ + + ++G+Q+H+ + K+G N V N L+ MY+ CG+I+ A++VF+
Sbjct: 475 FTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNF 534
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
M+ R+++SW S++ G A HG++ ++ F QM + +KP+ T++ +LSAC H G + +G
Sbjct: 535 MENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEG 594
Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
++F M D ++ P+ EHY +V LL RAG L +A FIN+M V++ L AC
Sbjct: 595 WRHFNSMYEDHKIK-PKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGAC 653
Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
+VH N E+ +A+++L+L PN+PA Y+ LSN+ W+++ ++R M R + K+ G
Sbjct: 654 RVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGG 713
Query: 303 YSWV 306
SW+
Sbjct: 714 CSWI 717
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 139/281 (49%), Gaps = 16/281 (5%)
Query: 6 YSRC--DSSLD-FQNVYSSVRTRNQISWNAIIAGF---CNLGSGEQALKCFSEM-RQAGI 58
Y++C D S+D + V+ + + +SW A+I G+ CNL + +A+ FSEM Q +
Sbjct: 312 YAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLAT--EAINLFSEMITQGHV 369
Query: 59 DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
+ ++FT +S A G +S + GKQ+ FK G SN V N ++ M+ + DA +
Sbjct: 370 EPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQR 429
Query: 119 VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178
F S+ E++LVS+N+ L G + +A +L ++ + E+ TF +LS + G
Sbjct: 430 AFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGS 489
Query: 179 IDKGLQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
I KG Q + +++ S P A++ + + G ++ A N M N + +
Sbjct: 490 IRKGEQIHSQVVKLGLSCNQPVC---NALISMYSKCGSIDTASRVFNFM-ENRNVISWTS 545
Query: 238 LLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVS 276
+++ HG + + ++++ + PN+ +LS S
Sbjct: 546 MITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACS 586
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 10/167 (5%)
Query: 15 FQN---VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA 71
F+N V+ + N ++W +I +G +A++ F +M +G + D FT++S+ A
Sbjct: 219 FENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSA 278
Query: 72 IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC---GAINDANKVFSSMDERDL 128
+ GKQ+H+ + G + V+ LV MYA C G+++D KVF M++ +
Sbjct: 279 CAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSV 336
Query: 129 VSWNSLLLGCAHH-GYSREAVQLFEQM-QKTEIKPDGTTFLVVLSAC 173
+SW +L+ G + + EA+ LF +M + ++P+ TF AC
Sbjct: 337 MSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 5/187 (2%)
Query: 3 ILTYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID 59
I YS+ S ++V+ ++R R+ +SW+A++A + N G A+K F E + G+
Sbjct: 104 ISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLV 163
Query: 60 IDYFTITSIVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQNRLVFMYAIC-GAINDAN 117
+ + T+++ A G+ + K G ++S+V V L+ M+ + +A
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223
Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
KVF M E ++V+W ++ C G+ REA++ F M + + D T V SAC
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELE 283
Query: 178 FIDKGLQ 184
+ G Q
Sbjct: 284 NLSLGKQ 290
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 222 bits (565), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 173/301 (57%), Gaps = 1/301 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++ D + V+S + R+ ISWN+++AG+ G +AL+ F +M A +
Sbjct: 287 YAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAF 346
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
+S++ A ++ GKQ+H + + G+ SN+F+ + LV MY+ CG I A K+F M+
Sbjct: 347 SSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNV 406
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
D VSW ++++G A HG+ EAV LFE+M++ +KP+ F+ VL+AC H G +D+ Y
Sbjct: 407 LDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGY 466
Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
F M L EHY A+ LLGRAG L EA +FI+ M P SV+ LLS+C VH
Sbjct: 467 FNSMTKVYGLN-QELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVH 525
Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
N E+A + A+++ + + YVL+ N+ + W + +R M +G+RKKP SW
Sbjct: 526 KNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSW 585
Query: 306 V 306
+
Sbjct: 586 I 586
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 133/272 (48%), Gaps = 8/272 (2%)
Query: 16 QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
+ V+ + ++ +S+N IIAG+ G E AL+ EM + D FT++S++
Sbjct: 196 RRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEY 255
Query: 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
+GK++H + + G DS+V++ + LV MYA I D+ +VFS + RD +SWNSL+
Sbjct: 256 VDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLV 315
Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDAS 194
G +G EA++LF QM ++KP F V+ AC H + G Q + Y++R
Sbjct: 316 AGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG 375
Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS-ACQVHGNREIAVR 253
A +A+V + + G + A + M+ S ++ A HG+ +++
Sbjct: 376 SNIFIA---SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLF 432
Query: 254 SAKRVLDLWPNDPAIYVLL---SNVSKATDCW 282
+ + PN A +L S+V + W
Sbjct: 433 EEMKRQGVKPNQVAFVAVLTACSHVGLVDEAW 464
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 86/188 (45%), Gaps = 36/188 (19%)
Query: 19 YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
+ ++++ ++W ++I F + +AL F EMR +G D+ S++ + ++
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121
Query: 79 KEGKQMHALIFKIGYDSNVFVQNRLVFMYA-ICG-------------------------- 111
+ G+ +H I ++G D +++ N L+ MYA + G
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181
Query: 112 ---------AINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
I+ +VF M +D+VS+N+++ G A G +A+++ +M T++KPD
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241
Query: 163 GTTFLVVL 170
T VL
Sbjct: 242 SFTLSSVL 249
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 221 bits (563), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 173/304 (56%), Gaps = 1/304 (0%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I Y++C+ +++ + ++N++SWN +I G+ NLG G +A F E + + +
Sbjct: 390 IDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTE 449
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
T +S +GA ++ G Q+H L K V V N L+ MYA CG I A VF+
Sbjct: 450 VTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNE 509
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
M+ D+ SWN+L+ G + HG R+A+++ + M+ + KP+G TFL VLS C +AG ID+G
Sbjct: 510 METIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQG 569
Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
+ F M D +EP EHYT +V LLGR+G L++A I + P +++A+LSA
Sbjct: 570 QECFESMIRDHGIEPC-LEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSAS 628
Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
N E A RSA+ +L + P D A YVL+SN+ W + IR M G++K+PG
Sbjct: 629 MNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPG 688
Query: 303 YSWV 306
SW+
Sbjct: 689 LSWI 692
Score = 111 bits (278), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 141/283 (49%), Gaps = 21/283 (7%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++ D V++ + + + W+ +IA FC G +A+ F MR+A + + FT+
Sbjct: 292 YTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTL 351
Query: 66 TSIVG--AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
+SI+ AIG SG G+Q+H L+ K+G+D +++V N L+ +YA C ++ A K+F+ +
Sbjct: 352 SSILNGCAIGKCSGL--GEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAEL 409
Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
++ VSWN++++G + G +A +F + + ++ TF L AC +D G+
Sbjct: 410 SSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGV 469
Query: 184 QY--FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
Q + N+A + +++ + + G + A+S N M S + AL+S
Sbjct: 470 QVHGLAIKTNNAK----KVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVAS-WNALISG 524
Query: 242 CQVHGNREIAVRSAKRVLDLW------PNDPAIYVLLSNVSKA 278
HG R A R+LD+ PN +LS S A
Sbjct: 525 YSTHG----LGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNA 563
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I YS C S + V+ + ++ + W I++ + G E +LK S MR AG +
Sbjct: 188 INAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNN 247
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
+T + + A + F K +H I K Y + V L+ +Y G ++DA KVF+
Sbjct: 248 YTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNE 307
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
M + D+V W+ ++ +G+ EAV LF +M++ + P+ T +L+ C
Sbjct: 308 MPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGC 358
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 104/218 (47%), Gaps = 10/218 (4%)
Query: 14 DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
D N++ + RN +S+ + G+ + + + +S + + G +++ TS +
Sbjct: 102 DALNLFDEMPERNNVSFVTLAQGY----ACQDPIGLYSRLHREGHELNPHVFTSFLKLFV 157
Query: 74 VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
+ + +H+ I K+GYDSN FV L+ Y++CG+++ A VF + +D+V W
Sbjct: 158 SLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAG 217
Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID--KGLQYFYLMRN 191
++ +GY ++++L M+ P+ TF L A G D KG+ + +++
Sbjct: 218 IVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGV-HGQILKT 276
Query: 192 DASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229
L+P ++ L + G +++A N M +N
Sbjct: 277 CYVLDPRVG---VGLLQLYTQLGDMSDAFKVFNEMPKN 311
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 221 bits (562), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 177/303 (58%), Gaps = 3/303 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFT 64
Y++ + ++ + +N SW A+I+GF G G +A F+EMR+ +DI D
Sbjct: 181 YAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLV 240
Query: 65 ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
++SIVGA ++ G+Q+H L+ +G+DS VF+ N L+ MYA C + A +FS M
Sbjct: 241 LSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMR 300
Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
RD+VSW SL++G A HG + +A+ L++ M +KP+ TF+ ++ AC H GF++KG +
Sbjct: 301 HRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRE 360
Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
F M D + P +HYT ++ LLGR+G L+EAE+ I++M P + ALLSAC+
Sbjct: 361 LFQSMTKDYGIRPS-LQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKR 419
Query: 245 HGNREIAVRSAKRVLDLWP-NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
G ++ +R A ++ + DP+ Y+LLSN+ + W + R + +RK PG+
Sbjct: 420 QGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGH 479
Query: 304 SWV 306
S V
Sbjct: 480 SSV 482
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Query: 5 TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGF--CNLGSGEQALKCFSEMRQAGIDIDY 62
Y +C ++ V+ + R+ I+W +++ NL SG+ S +G+ D
Sbjct: 47 VYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANL-SGKTLSVFSSVGSSSGLRPDD 105
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
F +++V A + G+Q+H Y ++ V++ LV MYA CG +N A VF S
Sbjct: 106 FVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDS 165
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLF 151
+ ++ +SW +++ G A G EA++LF
Sbjct: 166 IRVKNTISWTAMVSGYAKSGRKEEALELF 194
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 8/175 (4%)
Query: 81 GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140
K +HA I K+G + N LV +Y CGA + A +VF M RD ++W S+L
Sbjct: 22 AKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQ 81
Query: 141 HGYSREAV-QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY--FYLMRNDASLEP 197
S + + + ++PD F ++ AC + G ID G Q +++ A+ E
Sbjct: 82 ANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEV 141
Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
+ +++V + + G LN A++ +S+ R + A++S G +E A+
Sbjct: 142 VK----SSLVDMYAKCGLLNSAKAVFDSI-RVKNTISWTAMVSGYAKSGRKEEAL 191
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 220 bits (561), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 174/301 (57%), Gaps = 1/301 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y +C + V+ ++ +N +SW A++ G+ G E+A+K F +M+++GID D++T+
Sbjct: 315 YCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTL 374
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
+ A +S +EG Q H G V V N LV +Y CG I+D+ ++F+ M+
Sbjct: 375 GQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNV 434
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
RD VSW +++ A G + E +QLF++M + +KPDG T V+SAC AG ++KG +Y
Sbjct: 435 RDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRY 494
Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
F LM ++ + P HY+ ++ L R+G L EA FIN M P + LLSAC+
Sbjct: 495 FKLMTSEYGIVPSIG-HYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNK 553
Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
GN EI +A+ +++L P+ PA Y LLS++ + WD +R M + ++K+PG SW
Sbjct: 554 GNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSW 613
Query: 306 V 306
+
Sbjct: 614 I 614
Score = 121 bits (303), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 119/221 (53%), Gaps = 11/221 (4%)
Query: 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
++ +SW A+I G G ++A++CF EM+ G+ +D + S++ A G + EGKQ+
Sbjct: 233 KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQI 292
Query: 85 HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
HA I + + +++V + L+ MY C ++ A VF M ++++VSW ++++G G +
Sbjct: 293 HACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRA 352
Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
EAV++F MQ++ I PD T +SAC + +++G Q+ + HY
Sbjct: 353 EEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLI------HYV 406
Query: 205 AI----VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
+ V L G+ G ++++ N M+ S + A++SA
Sbjct: 407 TVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVS-WTAMVSA 446
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 103/213 (48%), Gaps = 31/213 (14%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
+L YS+ + ++ + + R+ ++WN +I G+ G A+K ++ M R ++
Sbjct: 79 LLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLT 138
Query: 62 YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
T+ +++ GKQ+H + K+G++S + V + L++MYA G I+DA KVF
Sbjct: 139 RVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFY 198
Query: 122 SMD------------------------------ERDLVSWNSLLLGCAHHGYSREAVQLF 151
+D E+D VSW +++ G A +G ++EA++ F
Sbjct: 199 GLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECF 258
Query: 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
+M+ +K D F VL AC G I++G Q
Sbjct: 259 REMKVQGLKMDQYPFGSVLPACGGLGAINEGKQ 291
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
+ Y +C D +++ + R+ +SW A+++ + G + ++ F +M Q G+ D
Sbjct: 413 VTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDG 472
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIF-KIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
T+T ++ A ++G++ L+ + G ++ + ++ +++ G + +A + +
Sbjct: 473 VTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFIN 532
Query: 122 SMD-ERDLVSWNSLLLGCAHHG 142
M D + W +LL C + G
Sbjct: 533 GMPFPPDAIGWTTLLSACRNKG 554
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 82 KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH 141
K +H I + F+ N +V YA+ + A +VF + + +L SWN+LLL +
Sbjct: 26 KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85
Query: 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAE 201
G E FE++ DG T+ V++ +G + ++ + M D S R
Sbjct: 86 GLISEMESTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVT 141
Query: 202 HYTAI 206
T +
Sbjct: 142 LMTML 146
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/305 (38%), Positives = 176/305 (57%), Gaps = 3/305 (0%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I Y +C S + ++ + + I+WNA+I+G+ G L+ + +M+ +G+ D
Sbjct: 198 ITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDP 257
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
FT+ S++ + + K G ++ L+ G+ NVFV N + MYA CG + A VF
Sbjct: 258 FTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDI 317
Query: 123 MDERDLVSWNSLLLGC-AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
M + LVSW +++ GC HG + LF+ M K I+PDG F++VLSAC H+G DK
Sbjct: 318 MPVKSLVSWTAMI-GCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDK 376
Query: 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
GL+ F M+ + LEP EHY+ +V LLGRAG L+EA FI SM P +V+ ALL A
Sbjct: 377 GLELFRAMKREYKLEPG-PEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGA 435
Query: 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301
C++H N ++A + +V++ PN+ YVL+SN+ + + IR +M R RKKP
Sbjct: 436 CKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKP 495
Query: 302 GYSWV 306
GYS+V
Sbjct: 496 GYSYV 500
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 144/304 (47%), Gaps = 9/304 (2%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQIS--WNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
I Y +C D + V+ +Q+S +NA+I+G+ A F M++ G+ +
Sbjct: 95 ISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSV 154
Query: 61 DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
D T+ +V V G+ +H K G DS V V N + MY CG++ ++F
Sbjct: 155 DSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLF 214
Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
M + L++WN+++ G + +G + + ++L+EQM+ + + PD T + VLS+C H G
Sbjct: 215 DEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKK 274
Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
G + L+ ++ + P A + + R G L +A + + M S + A++
Sbjct: 275 IGHEVGKLVESNGFV--PNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVS-WTAMIG 331
Query: 241 ACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
+HG EI + ++ + P D A++V++ + + D ++ M R +
Sbjct: 332 CYGMHGMGEIGLMLFDDMIKRGIRP-DGAVFVMVLSACSHSGLTDKGLELFRAM-KREYK 389
Query: 299 KKPG 302
+PG
Sbjct: 390 LEPG 393
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 2/156 (1%)
Query: 20 SSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFK 79
S+V WN + +++ + M ++G D F+ I+ + +S
Sbjct: 11 SAVAAVASTPWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPV 70
Query: 80 EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVS--WNSLLLG 137
G+Q+H + K G ++ FV L+ MY CG + DA KVF + +S +N+L+ G
Sbjct: 71 SGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISG 130
Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
+ +A +F +M++T + D T L ++ C
Sbjct: 131 YTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLC 166
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLM 189
WN L A+ E++ L+ M ++ PD +F +L +C G Q + ++
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV-YKALLSA 241
+ EP TA++ + + G + +A ++ SV Y AL+S
Sbjct: 81 KGGCETEPFV---LTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISG 130
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 171/291 (58%), Gaps = 3/291 (1%)
Query: 18 VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID--IDYFTITSIVGAIGVI 75
V+ + RN +SW+A+IA + G +AL+ F EM + D + T+ S++ A +
Sbjct: 239 VFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASL 298
Query: 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
+ ++GK +H I + G DS + V + LV MY CG + +VF M +RD+VSWNSL+
Sbjct: 299 AALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLI 358
Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
HGY ++A+Q+FE+M P TF+ VL AC H G +++G + F M D +
Sbjct: 359 SSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGI 418
Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
+ P+ EHY +V LLGRA L+EA + M PGP V+ +LL +C++HGN E+A R++
Sbjct: 419 K-PQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERAS 477
Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
+R+ L P + YVLL+++ WD+ ++ L+ +RG++K PG W+
Sbjct: 478 RRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWM 528
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 134/257 (52%), Gaps = 14/257 (5%)
Query: 12 SLDF-QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVG 70
S+D+ + V+ R R WNA+ G GE+ L + +M + G++ D FT T ++
Sbjct: 127 SVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLK 186
Query: 71 AI----GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126
A ++ +GK++HA + + GY S+V++ LV MYA G ++ A+ VF M R
Sbjct: 187 ACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVR 246
Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLSACCHAGFIDKG-- 182
++VSW++++ A +G + EA++ F +M + + P+ T + VL AC +++G
Sbjct: 247 NVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKL 306
Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
+ + L R S+ P +A+V + GR G L + + M S + +L+S+
Sbjct: 307 IHGYILRRGLDSILPV----ISALVTMYGRCGKLEVGQRVFDRMHDRDVVS-WNSLISSY 361
Query: 243 QVHGNREIAVRSAKRVL 259
VHG + A++ + +L
Sbjct: 362 GVHGYGKKAIQIFEEML 378
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 8/160 (5%)
Query: 27 QISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHA 86
+IS N +I C G +QA++ S+ T ++ G S + ++H
Sbjct: 46 KISNNQLIQSLCKEGKLKQAIRVLSQESSPSQQ----TYELLILCCGHRSSLSDALRVHR 101
Query: 87 LIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSRE 146
I G D + F+ +L+ MY+ G+++ A KVF +R + WN+L G+ E
Sbjct: 102 HILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEE 161
Query: 147 AVQLFEQMQKTEIKPDGTTFLVVLSAC----CHAGFIDKG 182
+ L+ +M + ++ D T+ VL AC C + KG
Sbjct: 162 VLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKG 201
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 2/168 (1%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
+ Y RC Q V+ + R+ +SWN++I+ + G G++A++ F EM G
Sbjct: 327 VTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTP 386
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
T S++GA +EGK++ +++ G + +V + +++A K+
Sbjct: 387 VTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQ 446
Query: 122 SM-DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168
M E W SLL C HG A + ++ E K G L+
Sbjct: 447 DMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLL 494
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 173/298 (58%), Gaps = 2/298 (0%)
Query: 10 DSSLD-FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
D +L+ F+ N +SW +IIAG G +AL+ F EM+ AG+ ++ TI S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394
Query: 69 VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
+ A G I+ G+ H ++ NV V + L+ MYA CG IN + VF+ M ++L
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNL 454
Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL 188
V WNSL+ G + HG ++E + +FE + +T +KPD +F +LSAC G D+G +YF +
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514
Query: 189 MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
M + ++ PR EHY+ +V LLGRAG L EA I M P V+ ALL++C++ N
Sbjct: 515 MSEEYGIK-PRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573
Query: 249 EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
++A +A+++ L P +P YVLLSN+ A W + IR M + G++K PG SW+
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWI 631
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 89/184 (48%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I +YS + D V S+ S++++I Q++ FS M G+ D
Sbjct: 57 IASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDS 116
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
+ ++ +S FK GKQ+H + G D + FVQ + MY CG + DA KVF
Sbjct: 117 HVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDR 176
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
M ++D+V+ ++LL A G E V++ +M+ + I+ + ++ +LS +G+ +
Sbjct: 177 MSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEA 236
Query: 183 LQYF 186
+ F
Sbjct: 237 VVMF 240
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 35/183 (19%)
Query: 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
N +SWN I++GF G ++A+ F ++ G D T++S++ ++G G+ +H
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275
Query: 86 ALIFKIGYDSNVFVQNRLVFMYA---------------------IC----------GAIN 114
+ K G + V + ++ MY +C G ++
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335
Query: 115 DANKVFSSMDER----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
A ++F E+ ++VSW S++ GCA +G EA++LF +MQ +KP+ T +L
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395
Query: 171 SAC 173
AC
Sbjct: 396 PAC 398
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++C Q V++ + T+N + WN+++ GF G ++ + F + + + D+ +
Sbjct: 433 YAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISF 492
Query: 66 TSIVGAIGVISGFKEG-KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
TS++ A G + EG K + + G + + +V + G + +A + M
Sbjct: 493 TSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMP 552
Query: 125 -ERDLVSWNSLLLGC 138
E D W +LL C
Sbjct: 553 FEPDSCVWGALLNSC 567
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 44/102 (43%)
Query: 83 QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
Q HA I K G ++ ++ +L+ Y+ NDA+ V S+ + + S++SL+
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95
Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
+++ +F +M + PD + C G Q
Sbjct: 96 LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQ 137
>sp|Q1PFQ9|PPR62_ARATH Pentatricopeptide repeat-containing protein At1g28690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2
SV=2
Length = 520
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 180/295 (61%), Gaps = 3/295 (1%)
Query: 14 DFQNVYSSVRTRNQISWNAIIAGFCNLG-SGEQALKCFSEMRQAGIDIDYFTITSIVGAI 72
D + ++++ + ++ + +NA++ GF G + ++++ + M++AG + T S++GA
Sbjct: 224 DAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGAC 283
Query: 73 GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWN 132
V++ + G+Q+HA I K G +++ + + L+ MYA CG INDA +VF M E+++ SW
Sbjct: 284 SVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWT 343
Query: 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
S++ G +G EA++LF +M++ I+P+ TFL LSAC H+G +DKG + F M+ D
Sbjct: 344 SMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRD 403
Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
S++ P+ EHY IV L+GRAG LN+A F +M P ++ ALLS+C +HGN E+A
Sbjct: 404 YSMK-PKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCNLHGNVELAS 462
Query: 253 RSAKRVLDLWPND-PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
+A + L + P Y+ LSNV + D WD+ IR +M R I K G SW
Sbjct: 463 IAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKRRRISKTIGRSWT 517
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 55/99 (55%)
Query: 79 KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
K GK++HA I K G+ ++ + +L+ ++ CG ++ A +VF + + L ++N ++ G
Sbjct: 51 KAGKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGY 110
Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177
HG +E + L ++M + K DG T +VL A G
Sbjct: 111 LKHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRG 149
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 112/278 (40%), Gaps = 42/278 (15%)
Query: 58 IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117
+++D IT++V V SG E + +F+ D NV ++ Y G + DA
Sbjct: 171 VELDDVLITALVDTY-VKSGKLESART---VFETMKDENVVCCTSMISGYMNQGFVEDAE 226
Query: 118 KVFSSMDERDLVSWNSLLLGCAHHGYS-REAVQLFEQMQKTEIKPDGTTFLVVLSAC--- 173
++F++ +D+V +N+++ G + G + + +V ++ MQ+ P+ +TF V+ AC
Sbjct: 227 EIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSVL 286
Query: 174 --------CHAGFIDKGLQYFYLMR-------------NDA-----SLEPPRAEHYTAIV 207
HA + G+ M NDA ++ +T+++
Sbjct: 287 TSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMI 346
Query: 208 GLLGRAGFLNEAESFINSMSR---NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
G+ G EA M P + LSAC G V + +
Sbjct: 347 DGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSG----LVDKGYEIFESMQR 402
Query: 265 DPAIYVLLSNVSKATDCWDDAGDI-RTLMYNRGIRKKP 301
D ++ + + + D AGD+ + + R + ++P
Sbjct: 403 DYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERP 440
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 24/150 (16%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++C D + V+ ++ +N SW ++I G+ G+ E+AL+ F+ M++ I+ +Y T
Sbjct: 318 YAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVT- 376
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQ---------NRLVFMYAICGAINDA 116
+GA+ S H+ + GY+ +Q + + G D
Sbjct: 377 --FLGALSACS--------HSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDL 426
Query: 117 NKVFS---SMDER-DLVSWNSLLLGCAHHG 142
NK F +M ER D W +LL C HG
Sbjct: 427 NKAFEFARAMPERPDSDIWAALLSSCNLHG 456
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 218 bits (554), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 187/301 (62%), Gaps = 1/301 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++C D V+ S++ ++ ++W++++AG+ + E+AL + ++ ++ + FT+
Sbjct: 207 YAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTL 266
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
+S++ A ++ EGKQMHA+I K G+ SNVFV + V MYA CG++ ++ +FS + E
Sbjct: 267 SSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQE 326
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
++L WN+++ G A H +E + LFE+MQ+ + P+ TF +LS C H G +++G ++
Sbjct: 327 KNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRF 386
Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
F LMR L P HY+ +V +LGRAG L+EA I S+ +P S++ +LL++C+V+
Sbjct: 387 FKLMRTTYGL-SPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVY 445
Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
N E+A +A+++ +L P + +VLLSN+ A W++ R L+ + ++K G SW
Sbjct: 446 KNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSW 505
Query: 306 V 306
+
Sbjct: 506 I 506
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 95/182 (52%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I YS+C + V+ + R+ +SWN +I + +AL F EMR G
Sbjct: 103 INAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSE 162
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
FTI+S++ A GV E K++H L K D N++V L+ +YA CG I DA +VF S
Sbjct: 163 FTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFES 222
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
M ++ V+W+S++ G + EA+ L+ + Q+ ++ + T V+ AC + + +G
Sbjct: 223 MQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 282
Query: 183 LQ 184
Q
Sbjct: 283 KQ 284
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%)
Query: 80 EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
E K H I +I + +V + N L+ Y+ CG + A +VF M ER LVSWN+++
Sbjct: 79 EAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYT 138
Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
+ EA+ +F +M+ K T VLSAC
Sbjct: 139 RNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 172
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 17/144 (11%)
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
R+LV + +L CA +G EA ++ + +++ D T V+++A GF++ Q
Sbjct: 61 RNLV--HEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQV 118
Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPG----PSVYKALLSA 241
F D LE + ++GL R +EA M RN G ++LSA
Sbjct: 119 F-----DGMLERSLVS-WNTMIGLYTRNRMESEALDIFLEM-RNEGFKFSEFTISSVLSA 171
Query: 242 CQVHGN----REIAVRSAKRVLDL 261
C V+ + +++ S K +DL
Sbjct: 172 CGVNCDALECKKLHCLSVKTCIDL 195
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 217 bits (553), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 179/302 (59%), Gaps = 2/302 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFT 64
Y++C S + + V+S +R ++ ISWN II G+ +AL F+ + + D T
Sbjct: 442 YAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERT 501
Query: 65 ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
+ ++ A +S F +G+++H I + GY S+ V N LV MYA CGA+ A+ +F +
Sbjct: 502 VACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA 561
Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
+DLVSW ++ G HG+ +EA+ LF QM++ I+ D +F+ +L AC H+G +D+G +
Sbjct: 562 SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWR 621
Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
+F +MR++ +EP EHY IV +L R G L +A FI +M P +++ ALL C++
Sbjct: 622 FFNIMRHECKIEPT-VEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 680
Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
H + ++A + A++V +L P + YVL++N+ + W+ +R + RG+RK PG S
Sbjct: 681 HHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 740
Query: 305 WV 306
W+
Sbjct: 741 WI 742
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 106/188 (56%), Gaps = 2/188 (1%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
YS+C + V+ + R+ +S+ ++IAG+ G +A+K F EM + GI D +T+
Sbjct: 341 YSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
T+++ EGK++H I + ++FV N L+ MYA CG++ +A VFS M
Sbjct: 401 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 460
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFE-QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
+D++SWN+++ G + + Y+ EA+ LF +++ PD T VL AC DKG +
Sbjct: 461 KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE 520
Query: 185 -YFYLMRN 191
+ Y+MRN
Sbjct: 521 IHGYIMRN 528
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 7/224 (3%)
Query: 4 LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
L R DS+ + V+ + R+ ISWN+II G+ + G E+ L F +M +GI+ID
Sbjct: 241 LKNQRVDSA---RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLA 297
Query: 64 TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
TI S+ G+ +H++ K + N L+ MY+ CG ++ A VF M
Sbjct: 298 TIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREM 357
Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
+R +VS+ S++ G A G + EAV+LFE+M++ I PD T VL+ C +D+G
Sbjct: 358 SDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGK 417
Query: 184 Q-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
+ + ++ ND + + A++ + + G + EAE + M
Sbjct: 418 RVHEWIKENDLGFDIFVS---NALMDMYAKCGSMQEAELVFSEM 458
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 86/179 (48%)
Query: 4 LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
L Y+ C + V+ V+ + WN ++ G ++ F +M +G+++D +
Sbjct: 137 LMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSY 196
Query: 64 TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
T + + + + G+Q+H I K G+ V N LV Y ++ A KVF M
Sbjct: 197 TFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEM 256
Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
ERD++SWNS++ G +G + + + +F QM + I+ D T + V + C + I G
Sbjct: 257 TERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 315
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 6/147 (4%)
Query: 25 RNQISWNAIIAGFCNLGSGEQALK--CFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGK 82
R+ N + FC G+ E A+K C S DID T+ S++ K+GK
Sbjct: 59 RSVTDANTQLRRFCESGNLENAVKLLCVS----GKWDIDPRTLCSVLQLCADSKSLKDGK 114
Query: 83 QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHG 142
++ I G+ + + ++L MY CG + +A++VF + + WN L+ A G
Sbjct: 115 EVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSG 174
Query: 143 YSREAVQLFEQMQKTEIKPDGTTFLVV 169
++ LF++M + ++ D TF V
Sbjct: 175 DFSGSIGLFKKMMSSGVEMDSYTFSCV 201
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 177/306 (57%), Gaps = 6/306 (1%)
Query: 6 YSRCDSSLDFQNVYSSV--RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--D 61
Y++C + ++ S+ + R+ ++W +I G+ G +AL+ SEM + +
Sbjct: 417 YAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPN 476
Query: 62 YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDS-NVFVQNRLVFMYAICGAINDANKVF 120
FTI+ + A ++ + GKQ+HA + ++ +FV N L+ MYA CG+I+DA VF
Sbjct: 477 AFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVF 536
Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
+M ++ V+W SL+ G HGY EA+ +F++M++ K DG T LVVL AC H+G ID
Sbjct: 537 DNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMID 596
Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
+G++YF M+ + P EHY +V LLGRAG LN A I M P P V+ A LS
Sbjct: 597 QGMEYFNRMKTVFGVSPG-PEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLS 655
Query: 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300
C++HG E+ +A+++ +L N Y LLSN+ W D IR+LM ++G++K+
Sbjct: 656 CCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKR 715
Query: 301 PGYSWV 306
PG SWV
Sbjct: 716 PGCSWV 721
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 103/184 (55%), Gaps = 6/184 (3%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
+ YSRC S D + V+ + + +SWN+II + LG + AL+ FS M + G D
Sbjct: 169 VAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPD 228
Query: 62 YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
T+ +++ + GKQ+H N+FV N LV MYA CG +++AN VFS
Sbjct: 229 NITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFS 288
Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
+M +D+VSWN+++ G + G +AV+LFE+MQ+ +IK D T+ +S G+ +
Sbjct: 289 NMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAIS-----GYAQR 343
Query: 182 GLQY 185
GL Y
Sbjct: 344 GLGY 347
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 4/225 (1%)
Query: 30 WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89
WN++I + + G + L F M D +T + A G IS + G+ HAL
Sbjct: 95 WNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSL 154
Query: 90 KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQ 149
G+ SNVFV N LV MY+ C +++DA KVF M D+VSWNS++ A G + A++
Sbjct: 155 VTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALE 214
Query: 150 LFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208
+F +M + +PD T + VL C G G Q ++ + +V
Sbjct: 215 MFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGN--CLVD 272
Query: 209 LLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVR 253
+ + G ++EA + ++MS S + A+++ G E AVR
Sbjct: 273 MYAKCGMMDEANTVFSNMSVKDVVS-WNAMVAGYSQIGRFEDAVR 316
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 121/251 (48%), Gaps = 17/251 (6%)
Query: 15 FQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74
F+ + + ++W+A I+G+ G G +AL +M +GI + T+ S++
Sbjct: 318 FEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCAS 377
Query: 75 ISGFKEGKQMHALIFKI-------GYDSNVFVQNRLVFMYAICGAINDANKVFSSMD--E 125
+ GK++H K G+ V N+L+ MYA C ++ A +F S+ E
Sbjct: 378 VGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKE 437
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
RD+V+W ++ G + HG + +A++L +M + + +P+ T L AC + G
Sbjct: 438 RDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGK 497
Query: 184 Q-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE-SFINSMSRNPGPSVYKALLSA 241
Q + Y +RN + P + ++ + + G +++A F N M++N + +L++
Sbjct: 498 QIHAYALRNQQNAVPLFVSN--CLIDMYAKCGSISDARLVFDNMMAKN--EVTWTSLMTG 553
Query: 242 CQVHGNREIAV 252
+HG E A+
Sbjct: 554 YGMHGYGEEAL 564
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 214 bits (544), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 171/304 (56%), Gaps = 2/304 (0%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I YS C D + V+ ++ ++ + WN++ AG+ E+AL F E++ + D
Sbjct: 496 IDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDE 555
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
FT ++V A G ++ + G++ H + K G + N ++ N L+ MYA CG+ DA+K F S
Sbjct: 556 FTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDS 615
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
RD+V WNS++ A+HG ++A+Q+ E+M I+P+ TF+ VLSAC HAG ++ G
Sbjct: 616 AASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDG 675
Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
L+ F LM P EHY +V LLGRAG LN+A I M P V+++LLS C
Sbjct: 676 LKQFELMLRFGI--EPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGC 733
Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
GN E+A +A+ + P D + +LSN+ + W +A +R M G+ K+PG
Sbjct: 734 AKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPG 793
Query: 303 YSWV 306
SW+
Sbjct: 794 RSWI 797
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 139/280 (49%), Gaps = 12/280 (4%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSG---EQALKCFSEMRQAGIDIDY 62
Y++CD D + V+ + + +NA+I G+ LG+ +AL F +MR I
Sbjct: 395 YAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSL 454
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
T S++ A ++ KQ+H L+FK G + ++F + L+ +Y+ C + D+ VF
Sbjct: 455 LTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDE 514
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
M +DLV WNS+ G + EA+ LF ++Q + +PD TF +++A + + G
Sbjct: 515 MKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLG 574
Query: 183 LQYF-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA-ESFINSMSRNPGPSVYKALLS 240
++ L++ P A++ + + G +A ++F ++ SR+ + +++S
Sbjct: 575 QEFHCQLLKRGLECNPYIT---NALLDMYAKCGSPEDAHKAFDSAASRD--VVCWNSVIS 629
Query: 241 ACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKA 278
+ HG + A++ ++++ + PN +LS S A
Sbjct: 630 SYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHA 669
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 97/176 (55%), Gaps = 1/176 (0%)
Query: 10 DSSLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68
D ++D+ V+ ++ ++ ++W +I+G +G +L+ F ++ + + D + ++++
Sbjct: 196 DGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTV 255
Query: 69 VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128
+ A ++ + GKQ+HA I + G + + + N L+ Y CG + A+K+F+ M +++
Sbjct: 256 LSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNI 315
Query: 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
+SW +LL G + +EA++LF M K +KPD +L++C + G Q
Sbjct: 316 ISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQ 371
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 12/200 (6%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-IDYFT 64
YSR + + V+ + RN +SW+ +++ + G E++L F E + D + +
Sbjct: 89 YSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYI 148
Query: 65 ITSIVGAIGVISGFKEGK----QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
++S + A + G G+ Q+ + + K G+D +V+V L+ Y G I+ A VF
Sbjct: 149 LSSFIQACSGLDG--RGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVF 206
Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
++ E+ V+W +++ GC G S ++QLF Q+ + + PDG VLSAC F++
Sbjct: 207 DALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLE 266
Query: 181 KGLQYF-----YLMRNDASL 195
G Q Y + DASL
Sbjct: 267 GGKQIHAHILRYGLEMDASL 286
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 89/173 (51%), Gaps = 3/173 (1%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I +Y +C + +++ + +N ISW +++G+ ++A++ F+ M + G+ D
Sbjct: 291 IDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDM 350
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
+ +SI+ + + G Q+HA K ++ +V N L+ MYA C + DA KVF
Sbjct: 351 YACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDI 410
Query: 123 MDERDLVSWNSLLLGCAHHGYS---REAVQLFEQMQKTEIKPDGTTFLVVLSA 172
D+V +N+++ G + G EA+ +F M+ I+P TF+ +L A
Sbjct: 411 FAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRA 463
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 84 MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
+H I G + + ++ N L+ +Y+ G + A KVF M ER+LVSW++++ C HHG
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125
Query: 144 SREAVQLFEQMQKT-EIKPDGTTFLVVLSAC 173
E++ +F + +T + P+ + AC
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQAC 156
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/280 (37%), Positives = 161/280 (57%), Gaps = 2/280 (0%)
Query: 28 ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHAL 87
+SWN+II+G+ E A F+ M + GI D FT +++ ++ GKQ+HA
Sbjct: 569 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 628
Query: 88 IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147
+ K S+V++ + LV MY+ CG ++D+ +F RD V+WN+++ G AHHG EA
Sbjct: 629 VIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEA 688
Query: 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207
+QLFE+M IKP+ TF+ +L AC H G IDKGL+YFY+M+ D L+ P+ HY+ +V
Sbjct: 689 IQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLD-PQLPHYSNMV 747
Query: 208 GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR-EIAVRSAKRVLDLWPNDP 266
+LG++G + A I M +++ LL C +H N E+A + +L L P D
Sbjct: 748 DILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDS 807
Query: 267 AIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
+ Y LLSNV W+ D+R M ++K+PG SWV
Sbjct: 808 SAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWV 847
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 90/168 (53%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++CD+ D Q ++ + N+ S+NA+I G+ G +AL F + +G+ D ++
Sbjct: 326 YAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISL 385
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
+ + A ++ G EG Q++ L K +V V N + MY C A+ +A +VF M
Sbjct: 386 SGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR 445
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
RD VSWN+++ +G E + LF M ++ I+PD TF +L AC
Sbjct: 446 RDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKAC 493
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 98/211 (46%), Gaps = 34/211 (16%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y +C + + V+ +R R+ +SWNAIIA G G + L F M ++ I+ D FT
Sbjct: 427 YGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTF 486
Query: 66 TSIVGA-IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS--- 121
SI+ A G G+ G ++H+ I K G SN V L+ MY+ CG I +A K+ S
Sbjct: 487 GSILKACTGGSLGY--GMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFF 544
Query: 122 -------SMDERD----------LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164
+M+E + VSWNS++ G S +A LF +M + I PD
Sbjct: 545 QRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKF 604
Query: 165 TFLVVLSACC-----------HAGFIDKGLQ 184
T+ VL C HA I K LQ
Sbjct: 605 TYATVLDTCANLASAGLGKQIHAQVIKKELQ 635
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 90/168 (53%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
YS+ + + ++ + R+ +SWN++++G+ G ++++ F +M + GI+ D T
Sbjct: 124 YSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTF 183
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
I+ + G Q+H ++ ++G D++V + L+ MYA ++ +VF + E
Sbjct: 184 AIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPE 243
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
++ VSW++++ GC + A++ F++MQK + + VL +C
Sbjct: 244 KNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSC 291
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 117/243 (48%), Gaps = 5/243 (2%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++ ++ V+ + +N +SW+AIIAG ALK F EM++ +
Sbjct: 225 YAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIY 284
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
S++ + +S + G Q+HA K + ++ V+ + MYA C + DA +F + +
Sbjct: 285 ASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSEN 344
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
+ S+N+++ G + + +A+ LF ++ + + D + V AC + +GLQ
Sbjct: 345 LNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQI 404
Query: 186 FYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
+ L +++ SL+ A A + + G+ L EA + M R S + A+++A +
Sbjct: 405 YGLAIKSSLSLDVCVA---NAAIDMYGKCQALAEAFRVFDEMRRRDAVS-WNAIIAAHEQ 460
Query: 245 HGN 247
+G
Sbjct: 461 NGK 463
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 96 NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
+V N+++ Y+ + AN F+ M RD+VSWNS+L G +G S +++++F M
Sbjct: 113 DVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMG 172
Query: 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
+ I+ DG TF ++L C G+Q
Sbjct: 173 REGIEFDGRTFAIILKVCSFLEDTSLGMQ 201
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 5/159 (3%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
YS+C D + ++ R+ ++WNA+I G+ + G GE+A++ F M I ++ T
Sbjct: 648 YSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTF 707
Query: 66 TSIVGAIGVISGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
SI+ A + +G + ++ + G D + + +V + G + A ++ M
Sbjct: 708 ISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMP 767
Query: 125 -ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
E D V W +LL C H R V++ E+ ++ D
Sbjct: 768 FEADDVIWRTLLGVCTIH---RNNVEVAEEATAALLRLD 803
>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2
SV=1
Length = 627
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 172/292 (58%), Gaps = 4/292 (1%)
Query: 18 VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGAIGVIS 76
++ + +N ISW +I G+ E+AL FS+M R + + T SI+ A ++
Sbjct: 286 LFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLA 345
Query: 77 GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS--MDERDLVSWNSL 134
G EG+Q+H LI K + N V + L+ MY+ G + A K+F + + +RDL+SWNS+
Sbjct: 346 GLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSM 405
Query: 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
+ AHHG+ +EA++++ QM+K KP T+L +L AC HAG ++KG+++F + D S
Sbjct: 406 IAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDES 465
Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
L P R EHYT +V L GRAG L + +FIN S Y A+LSAC VH IA
Sbjct: 466 L-PLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACNVHNEVSIAKEV 524
Query: 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
K+VL+ +D YVL+SN+ A ++A ++R M +G++K+PG SWV
Sbjct: 525 VKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWV 576
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 86/176 (48%), Gaps = 15/176 (8%)
Query: 16 QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
+ ++ + R+ ++W +I G+ LG +A + F + + ++V ++
Sbjct: 66 RKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVD---------SRKNVVTWTAMV 116
Query: 76 SGFKEGKQMH--ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
SG+ KQ+ ++F+ + NV N ++ YA G I+ A ++F M ER++VSWNS
Sbjct: 117 SGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNS 176
Query: 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189
++ G EA+ LFE+M + ++ ++ ++ G +D+ + F M
Sbjct: 177 MVKALVQRGRIDEAMNLFERMPRRDV----VSWTAMVDGLAKNGKVDEARRLFDCM 228
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 89/190 (46%), Gaps = 15/190 (7%)
Query: 8 RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
R D +L+ ++ + RN +SWN+++ G ++A+ F M + D + T+
Sbjct: 155 RIDKALE---LFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRR----DVVSWTA 207
Query: 68 IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD 127
+V + E +++ F + N+ N ++ YA I++A+++F M ERD
Sbjct: 208 MVDGLAKNGKVDEARRL----FDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERD 263
Query: 128 LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187
SWN+++ G + +A LF++M + + ++ +++ ++ L F
Sbjct: 264 FASWNTMITGFIRNREMNKACGLFDRMPEKNV----ISWTTMITGYVENKENEEALNVFS 319
Query: 188 LMRNDASLEP 197
M D S++P
Sbjct: 320 KMLRDGSVKP 329
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE------------------ 152
G I +A K+F + ERD+V+W ++ G G REA +LF+
Sbjct: 60 GKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGY 119
Query: 153 ----QMQKTEI------KPDGTTFLVVLSACCHAGFIDKGLQYFYLM--RNDASLEPPRA 200
Q+ E+ + + ++ ++ +G IDK L+ F M RN S
Sbjct: 120 LRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVS------ 173
Query: 201 EHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260
+ ++V L + G ++EA + M R S + A++ +G V A+R+ D
Sbjct: 174 --WNSMVKALVQRGRIDEAMNLFERMPRRDVVS-WTAMVDGLAKNGK----VDEARRLFD 226
Query: 261 LWP 263
P
Sbjct: 227 CMP 229
>sp|O23491|PP315_ARATH Pentatricopeptide repeat-containing protein At4g16470
OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2
Length = 501
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 170/289 (58%), Gaps = 1/289 (0%)
Query: 18 VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
++ S++ R+ I WNA+I+G+ G ++ L + +MRQ I D +T S+ A +
Sbjct: 165 LFRSLKIRDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDR 224
Query: 78 FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
+ GK+ HA++ K SN+ V + LV MY C + +D ++VF + R++++W SL+ G
Sbjct: 225 LEHGKRAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISG 284
Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP 197
+HG E ++ FE+M++ +P+ TFLVVL+AC H G +DKG ++FY M+ D +E
Sbjct: 285 YGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHFYSMKRDYGIE- 343
Query: 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257
P +HY A+V LGRAG L EA F+ P V+ +LL AC++HGN ++ +A +
Sbjct: 344 PEGQHYAAMVDTLGRAGRLQEAYEFVMKSPCKEHPPVWGSLLGACRIHGNVKLLELAATK 403
Query: 258 VLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
L+L P + YV+ +N + + A +R M N G++K PGYS +
Sbjct: 404 FLELDPTNGGNYVVFANGYASCGLREAASKVRRKMENAGVKKDPGYSQI 452
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 80/158 (50%), Gaps = 3/158 (1%)
Query: 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
R + + G C G ++A+ + +G+ ++ T ++ + +GK++
Sbjct: 74 RKTEKLDKTLKGLCVTGRLKEAVGL---LWSSGLQVEPETYAVLLQECKQRKEYTKGKRI 130
Query: 85 HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
HA +F +G+ N +++ +L+ +YA+ G + A +F S+ RDL+ WN+++ G G
Sbjct: 131 HAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRSLKIRDLIPWNAMISGYVQKGLE 190
Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
+E + ++ M++ I PD TF V AC ++ G
Sbjct: 191 QEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHG 228
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 6/141 (4%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y +C S D V+ + TRN I+W ++I+G+ G + LKCF +M++ G + T
Sbjct: 254 YFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTF 313
Query: 66 TSIVGAI---GVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK-VFS 121
++ A G++ K + +++ G + +V G + +A + V
Sbjct: 314 LVVLTACNHGGLVD--KGWEHFYSMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEFVMK 371
Query: 122 SMDERDLVSWNSLLLGCAHHG 142
S + W SLL C HG
Sbjct: 372 SPCKEHPPVWGSLLGACRIHG 392
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 212 bits (540), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 175/302 (57%), Gaps = 2/302 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++C+ + + ++ S+ R +SW A+I+G+ G LK F++MR + + D T
Sbjct: 396 YAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTF 455
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
+++ A + GKQ+HA I + G NVF + LV MYA CG+I DA +VF M +
Sbjct: 456 ATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPD 515
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
R+ VSWN+L+ A +G A+ F +M ++ ++PD + L VL+AC H GF+++G +Y
Sbjct: 516 RNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEY 575
Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
F M + P+ +HY ++ LLGR G EAE ++ M P ++ ++L+AC++H
Sbjct: 576 FQAMSPIYGI-TPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIH 634
Query: 246 GNREIAVRSAKRVLDLWP-NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
N+ +A R+A+++ + D A YV +SN+ A W+ D++ M RGI+K P YS
Sbjct: 635 KNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYS 694
Query: 305 WV 306
WV
Sbjct: 695 WV 696
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 131/278 (47%), Gaps = 6/278 (2%)
Query: 2 QILT-YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
QIL YS+ D L+ + ++ + + +S+N +I+ + E +L F EM+ G D
Sbjct: 290 QILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDR 349
Query: 61 DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
F +++ +S + G+Q+H DS + V N LV MYA C +A +F
Sbjct: 350 RNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIF 409
Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
S+ +R VSW +L+ G G ++LF +M+ + ++ D +TF VL A +
Sbjct: 410 KSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLL 469
Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
G Q + +LE + +V + + G + +A M S + AL+S
Sbjct: 470 LGKQLHAFIIRSGNLE--NVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVS-WNALIS 526
Query: 241 ACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVS 276
A +G+ E A+ + ++++ L P+ +I +L+ S
Sbjct: 527 AHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 2/184 (1%)
Query: 3 ILTYSRCD-SSLDFQNV-YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60
+L S C+ LD V + + ++ +++N +I G+ G +++ F +MRQ+G
Sbjct: 189 VLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQP 248
Query: 61 DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVF 120
FT + ++ A+ + F G+Q+HAL G+ + V N+++ Y+ + + +F
Sbjct: 249 SDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLF 308
Query: 121 SSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
M E D VS+N ++ + ++ F +MQ F +LS + +
Sbjct: 309 DEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQ 368
Query: 181 KGLQ 184
G Q
Sbjct: 369 MGRQ 372
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 16 QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDI-DYFTITSIVGAIG 73
++++ ++ R ++W ++ + ++A K F +M R + + D+ T T+++
Sbjct: 99 RDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCN 158
Query: 74 VISGFKEGKQMHALIFKIGYDSNVF--VQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
Q+HA K+G+D+N F V N L+ Y ++ A +F + E+D V++
Sbjct: 159 DAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTF 218
Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172
N+L+ G G E++ LF +M+++ +P TF VL A
Sbjct: 219 NTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 78 FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLG 137
F + +++ A I K G+D++ N +V G ++ A KV+ M ++ VS N+++ G
Sbjct: 29 FLDTRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISG 88
Query: 138 CAHHGYSREAVQLFEQMQKTEIKPDGT--TFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
G A LF+ M PD T T+ +++ D+ + F M +S
Sbjct: 89 HVKTGDVSSARDLFDAM------PDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSC 142
Query: 196 EPPRAEHYTAIV 207
P +T ++
Sbjct: 143 TLPDHVTFTTLL 154
>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570
OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
Length = 611
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 174/303 (57%), Gaps = 4/303 (1%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y RC + ++ + + ++ I+WN +I+ S E AL F G + +T
Sbjct: 258 YCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSDSSE-ALLMFQRFESQGFVPNCYTF 316
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-D 124
TS+V A I+ G+Q+H IF+ G++ NV + N L+ MYA CG I D+ +VF + D
Sbjct: 317 TSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVD 376
Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
R+LVSW S+++G HGY EAV+LF++M + I+PD F+ VLSAC HAG ++KGL+
Sbjct: 377 RRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLK 436
Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
YF +M ++ + P R + Y +V LLGRAG + EA + M P S + A+L AC+
Sbjct: 437 YFNVMESEYGINPDR-DIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKA 495
Query: 245 HGNREIAVR-SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
H + + R +A++V++L P YV+LS + A W D +R +M G +K+ G
Sbjct: 496 HKHNGLISRLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKKEAGM 555
Query: 304 SWV 306
SW+
Sbjct: 556 SWI 558
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 98/180 (54%), Gaps = 2/180 (1%)
Query: 6 YSRCDSSLDFQN-VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT 64
Y+ C +++ ++ ++ +N ++W +I GF +LG G LK + +M ++ +
Sbjct: 156 YATCSVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYC 215
Query: 65 ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
IT V A I GKQ+HA + K G+ SN+ V N ++ +Y CG +++A F M+
Sbjct: 216 ITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEME 275
Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
++DL++WN+L+ S EA+ +F++ + P+ TF +++AC + ++ G Q
Sbjct: 276 DKDLITWNTLISELERSD-SSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQ 334
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 109/223 (48%), Gaps = 25/223 (11%)
Query: 16 QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
++++ + R+ ++W A+I G+ + +A +CF EM + G + FT++S++ + +
Sbjct: 65 RSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRNM 124
Query: 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN-KVFSSMDERDLVSWNSL 134
G +H ++ K+G + +++V N ++ MYA C +A +F + ++ V+W +L
Sbjct: 125 KVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTL 184
Query: 135 LLGCAHHGYSREAVQLFEQM--QKTEIKPDGTTFLVVLSAC---------CHAGFIDKGL 183
+ G H G +++++QM + E+ P T V SA HA I +G
Sbjct: 185 ITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGF 244
Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
Q + N +I+ L R G+L+EA+ + + M
Sbjct: 245 QSNLPVMN-------------SILDLYCRCGYLSEAKHYFHEM 274
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 103 LVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
L+ Y G + +A +F M +RD+V+W +++ G A Y+ A + F +M K P+
Sbjct: 51 LIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPN 110
Query: 163 GTTFLVVLSAC 173
T VL +C
Sbjct: 111 EFTLSSVLKSC 121
>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610
OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
Length = 654
Score = 211 bits (538), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 164/301 (54%), Gaps = 1/301 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++ S D +S + ++ IS+N++I G E++ + F EMR +GI D T+
Sbjct: 353 YAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTL 412
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
++ A ++ G H GY N + N L+ MY CG ++ A +VF +M +
Sbjct: 413 LGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHK 472
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
RD+VSWN++L G HG +EA+ LF MQ+T + PD T L +LSAC H+G +D+G Q
Sbjct: 473 RDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQL 532
Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
F M PR +HY + LL RAG+L+EA F+N M P V LLSAC +
Sbjct: 533 FNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTY 592
Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
N E+ +K++ L ++ VLLSN A + W+DA IR + RG+ K PGYSW
Sbjct: 593 KNAELGNEVSKKMQSLGETTESL-VLLSNTYSAAERWEDAARIRMIQKKRGLLKTPGYSW 651
Query: 306 V 306
V
Sbjct: 652 V 652
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 125/284 (44%), Gaps = 52/284 (18%)
Query: 2 QILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID 61
+ + Y+R LDF+ +N+++W+A+I G+ ++A + F +M ++ +
Sbjct: 254 KCIIYARRVFDLDFK--------KNEVTWSAMIGGYVENEMIKEAGEVFFQML---VNDN 302
Query: 62 YFTITSIVGAIGVI-------SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN 114
+T + AIG+I G+ +H K G+ ++ VQN ++ YA G++
Sbjct: 303 VAMVTPV--AIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLC 360
Query: 115 DANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174
DA + FS + +D++S+NSL+ GC + E+ +LF +M+ + I+PD TT L VL+AC
Sbjct: 361 DAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACS 420
Query: 175 HAGFIDKGL-----------------------QYFYLMRNDASLEPPRAEHYTAIVGL-- 209
H + G Y + D + H IV
Sbjct: 421 HLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNT 480
Query: 210 ----LGRAGFLNEAESFINSMSR---NPGPSVYKALLSACQVHG 246
G G EA S NSM NP A+LSAC G
Sbjct: 481 MLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSG 524
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 85/158 (53%), Gaps = 1/158 (0%)
Query: 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85
N I+W+ +I + + E+AL + +M +G+ +T ++ A + +GK +H
Sbjct: 67 NPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIH 126
Query: 86 ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145
+ + + ++++V LV YA CG + A KVF M +RD+V+WN+++ G + H
Sbjct: 127 SHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLT 186
Query: 146 EAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKG 182
+ + LF M++ + + P+ +T + + A AG + +G
Sbjct: 187 DVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREG 224
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 79/150 (52%), Gaps = 1/150 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDIDYFT 64
Y++C V+ + R+ ++WNA+I+GF + F +MR+ G+ + T
Sbjct: 148 YAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLST 207
Query: 65 ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
I + A+G +EGK +H ++G+ +++ V+ ++ +YA I A +VF
Sbjct: 208 IVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDF 267
Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQM 154
+++ V+W++++ G + +EA ++F QM
Sbjct: 268 KKNEVTWSAMIGGYVENEMIKEAGEVFFQM 297
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 211 bits (538), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 176/302 (58%), Gaps = 2/302 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++C ++ + R+ +SWN++I + A+ F +M +GI D +I
Sbjct: 486 YAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSI 545
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
++ + A + GK +H + K S+V+ ++ L+ MYA CG + A VF +M E
Sbjct: 546 SAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKE 605
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
+++VSWNS++ C +HG ++++ LF +M +K+ I+PD TFL ++S+CCH G +D+G++
Sbjct: 606 KNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVR 665
Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
+F M D ++P + EHY +V L GRAG L EA + SM P V+ LL AC++
Sbjct: 666 FFRSMTEDYGIQP-QQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRL 724
Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
H N E+A ++ +++DL P++ YVL+SN W+ +R+LM R ++K PGYS
Sbjct: 725 HKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYS 784
Query: 305 WV 306
W+
Sbjct: 785 WI 786
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 122/247 (49%), Gaps = 7/247 (2%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I Y +C QN++S + + + + A+I+G+ + G +L+ F + + I +
Sbjct: 382 IDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNE 441
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
T+ SI+ IG++ K G+++H I K G+D+ + ++ MYA CG +N A ++F
Sbjct: 442 ITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFER 501
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH--AGFID 180
+ +RD+VSWNS++ CA A+ +F QM + I D + LSAC + +
Sbjct: 502 LSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFG 561
Query: 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
K + F + + AS + ++ + + G L A + +M S + ++++
Sbjct: 562 KAIHGFMIKHSLAS----DVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVS-WNSIIA 616
Query: 241 ACQVHGN 247
AC HG
Sbjct: 617 ACGNHGK 623
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 1/181 (0%)
Query: 17 NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
++ V ++ + WN ++ G+ G+ + +K FS MR I + T ++
Sbjct: 194 KLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKL 253
Query: 77 GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
G Q+H L+ G D ++N L+ MY+ CG +DA+K+F M D V+WN ++
Sbjct: 254 LIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMIS 313
Query: 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASL 195
G G E++ F +M + + PD TF +L + ++ Q + Y+MR+ SL
Sbjct: 314 GYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISL 373
Query: 196 E 196
+
Sbjct: 374 D 374
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 87/165 (52%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
YS+C D ++ + + ++WN +I+G+ G E++L F EM +G+ D T
Sbjct: 284 YSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITF 343
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
+S++ ++ + KQ+H I + ++F+ + L+ Y C ++ A +FS +
Sbjct: 344 SSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNS 403
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
D+V + +++ G H+G +++++F + K +I P+ T + +L
Sbjct: 404 VDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSIL 448
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 4/225 (1%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQI--SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
Y+ C S D ++ + R WN+II+ F G QAL + +M G+ D
Sbjct: 80 YAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVS 139
Query: 64 TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
T +V A + FK + + +G D N FV + L+ Y G I+ +K+F +
Sbjct: 140 TFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRV 199
Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
++D V WN +L G A G ++ F M+ +I P+ TF VLS C ID G+
Sbjct: 200 LQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGV 259
Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228
Q L+ S +++ + + G ++A MSR
Sbjct: 260 QLHGLVV--VSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSR 302
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 78 FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER--DLVSWNSLL 135
++GKQ+HA + + + R++ MYA+CG+ +D K+F +D R + WNS++
Sbjct: 51 LRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSII 110
Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
+G +A+ + +M + PD +TF ++ AC
Sbjct: 111 SSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKAC 148
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 170/288 (59%), Gaps = 1/288 (0%)
Query: 19 YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
+ + R++ISW +I G+ G ++L+ F EM+ AG+ D FT+ S++ A +
Sbjct: 325 FDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSL 384
Query: 79 KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138
+ G+ + I K ++V V N L+ MY CG A KVF MD+RD +W ++++G
Sbjct: 385 EIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGL 444
Query: 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP 198
A++G +EA+++F QMQ I+PD T+L VLSAC H+G +D+ ++F MR+D +EP
Sbjct: 445 ANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPS 504
Query: 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258
HY +V +LGRAG + EA + M NP V+ ALL A ++H + +A +AK++
Sbjct: 505 LV-HYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKI 563
Query: 259 LDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
L+L P++ A+Y LL N+ W D ++R + + I+K PG+S +
Sbjct: 564 LELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLI 611
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 1/158 (0%)
Query: 17 NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
++ + + + WN +I G+ + + ++ + M + G+ D T ++ +
Sbjct: 89 KLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDG 148
Query: 77 G-FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
G GK++H + K G SN++VQN LV MY++CG ++ A VF + D+ SWN ++
Sbjct: 149 GALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMI 208
Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
G E+++L +M++ + P T L+VLSAC
Sbjct: 209 SGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSAC 246
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 31/208 (14%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
YS C + V+ + SWN +I+G+ + E++++ EM + + T+
Sbjct: 180 YSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTL 239
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
++ A + K++H + + + ++ ++N LV YA CG ++ A ++F SM
Sbjct: 240 LLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKA 299
Query: 126 RDLVSWNSLLLGCAHH--------------------------GYSR-----EAVQLFEQM 154
RD++SW S++ G GY R E++++F +M
Sbjct: 300 RDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREM 359
Query: 155 QKTEIKPDGTTFLVVLSACCHAGFIDKG 182
Q + PD T + VL+AC H G ++ G
Sbjct: 360 QSAGMIPDEFTMVSVLTACAHLGSLEIG 387
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 58 IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA--ICGAIND 115
I DY SI+G FK Q+H+ G N Q +L + + G ++
Sbjct: 30 ISNDYSRFISILGVCKTTDQFK---QLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSY 86
Query: 116 ANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
A K+F + E D+V WN+++ G + E V+L+ M K + PD TF +L+
Sbjct: 87 AYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKR 146
Query: 176 AG 177
G
Sbjct: 147 DG 148
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 16/173 (9%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI---DIDY 62
Y +C S Q V+ + R++ +W A++ G N G G++A+K F +M+ I DI Y
Sbjct: 413 YFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITY 472
Query: 63 FTITSIVGAIGVISG----FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118
+ S G++ F + + H + + ++ +V M G + +A +
Sbjct: 473 LGVLSACNHSGMVDQARKFFAKMRSDHRI------EPSLVHYGCMVDMLGRAGLVKEAYE 526
Query: 119 VFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
+ M + + W +LL H + E + + E++PD +L
Sbjct: 527 ILRKMPMNPNSIVWGALLGASRLH--NDEPMAELAAKKILELEPDNGAVYALL 577
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 171/301 (56%), Gaps = 1/301 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y +C + + ++ + ISW+++I G+ G +A+ F +++ ID F +
Sbjct: 257 YVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFAL 316
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
+SI+G + ++GKQM AL K+ V N +V MY CG +++A K F+ M
Sbjct: 317 SSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQL 376
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
+D++SW ++ G HG +++V++F +M + I+PD +L VLSAC H+G I +G +
Sbjct: 377 KDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEEL 436
Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
F + ++ PR EHY +V LLGRAG L EA+ I++M P +++ LLS C+VH
Sbjct: 437 FSKLLETHGIK-PRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVH 495
Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
G+ E+ K +L + +PA YV++SN+ W++ G+ R L +G++K+ G SW
Sbjct: 496 GDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSW 555
Query: 306 V 306
V
Sbjct: 556 V 556
Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 116/216 (53%), Gaps = 2/216 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y +C L V+ S+ RN +SW+A+++G G + +L FSEM + GI + FT
Sbjct: 51 YCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTF 110
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
++ + A G+++ ++G Q+H KIG++ V V N LV MY+ CG IN+A KVF + +
Sbjct: 111 STNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVD 170
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK--PDGTTFLVVLSACCHAGFIDKGL 183
R L+SWN+++ G H GY +A+ F MQ+ IK PD T +L AC G I G
Sbjct: 171 RSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGK 230
Query: 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219
Q + P A ++V L + G+L A
Sbjct: 231 QIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSA 266
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Query: 80 EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
+G Q+H + K G N+ N L+ MY C A KVF SM ER++VSW++L+ G
Sbjct: 24 QGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHV 83
Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYLMRNDASLEPP 198
+G + ++ LF +M + I P+ TF L AC ++KGLQ + + ++ +
Sbjct: 84 LNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEM--- 140
Query: 199 RAEHYTAIVGLLGRAGFLNEAE 220
E ++V + + G +NEAE
Sbjct: 141 MVEVGNSLVDMYSKCGRINEAE 162
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 209 bits (531), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 184/304 (60%), Gaps = 7/304 (2%)
Query: 8 RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS 67
+C + ++ ++ ++WNA+I+G+ N G ++AL F EMR AG D TI S
Sbjct: 221 KCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILS 280
Query: 68 IVGAIGVISGFKEGKQMHALIFKIG-YDSNVFVQ----NRLVFMYAICGAINDANKVFSS 122
++ A V+ + GK++H I + S+++V N L+ MYA CG+I+ A +VF
Sbjct: 281 LLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRG 340
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
+ +RDL +WN+L++G A H ++ ++++FE+MQ+ ++ P+ TF+ V+ AC H+G +D+G
Sbjct: 341 VKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEG 399
Query: 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242
+YF LMR+ ++EP +HY +V +LGRAG L EA F+ SM P V++ LL AC
Sbjct: 400 RKYFSLMRDMYNIEP-NIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGAC 458
Query: 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302
+++GN E+ + +++L + ++ YVLLSN+ +T WD +R + + ++K G
Sbjct: 459 KIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTG 518
Query: 303 YSWV 306
S +
Sbjct: 519 VSLI 522
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 119/279 (42%), Gaps = 14/279 (5%)
Query: 31 NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
N ++ G E+ + ++EM + G+ D +T T ++ A + G H + +
Sbjct: 81 NHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVR 140
Query: 91 IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
G+ N +V+N L+ +A CG + A+++F + V+W+S+ G A G EA++L
Sbjct: 141 HGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRL 200
Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLL 210
F++M D + V+++ C +D + F D E I G +
Sbjct: 201 FDEMPYK----DQVAWNVMITGCLKCKEMDSARELF-----DRFTEKDVVTWNAMISGYV 251
Query: 211 GRAGFLNEAESFINSM---SRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267
G+ EA M +P +LLSAC V G+ E R +L+ +
Sbjct: 252 N-CGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSS 310
Query: 268 IYVLLSNVSKATDCWDDAGDI-RTLMYNRGIRKKPGYSW 305
IYV + D + G I R + RG++ + +W
Sbjct: 311 IYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTW 349
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 82 KQMHALIFKIGYDSNVFVQNRLVFM--YAICGAINDANKVFSSMDERDLVSWNSLLLGCA 139
KQ+HA + G SN+ V L++ ++ GA+ A+K+F + + D+ N +L G A
Sbjct: 29 KQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSA 88
Query: 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
+ V L+ +M+K + PD TF VL AC + G +
Sbjct: 89 QSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAF 134
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 85/198 (42%), Gaps = 5/198 (2%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I Y++C S V+ V+ R+ +WN +I G L E +++ F EM++ + +
Sbjct: 322 IDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLA-LHHAEGSIEMFEEMQRLKVWPNE 380
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFS 121
T ++ A EG++ +L+ + + N+ +V M G + +A
Sbjct: 381 VTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVE 440
Query: 122 SMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180
SM E + + W +LL C +G E++ ++ D + V+LS +
Sbjct: 441 SMKIEPNAIVWRTLLGACKIYGNVELGKYANEKL--LSMRKDESGDYVLLSNIYASTGQW 498
Query: 181 KGLQYFYLMRNDASLEPP 198
G+Q M +D ++ P
Sbjct: 499 DGVQKVRKMFDDTRVKKP 516
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 208 bits (529), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 171/291 (58%), Gaps = 2/291 (0%)
Query: 17 NVYSSVRTR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
N++ R + +SWN I+ + L+ F M + + D+ T+ +++ I
Sbjct: 427 NLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEI 486
Query: 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
S K G Q+H K G F++N L+ MYA CG++ A ++F SMD RD+VSW++L+
Sbjct: 487 SSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLI 546
Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
+G A G+ EA+ LF++M+ I+P+ TF+ VL+AC H G +++GL+ + M+ + +
Sbjct: 547 VGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGI 606
Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
P + EH + +V LL RAG LNEAE FI+ M P V+K LLSAC+ GN +A ++A
Sbjct: 607 SPTK-EHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAA 665
Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
+ +L + P + +VLL ++ ++ W++A +R+ M ++K PG SW+
Sbjct: 666 ENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWI 716
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 131/275 (47%), Gaps = 6/275 (2%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y +C S D + V+ + RN +S+ ++I G+ G G +A++ + +M Q + D F
Sbjct: 112 YGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAF 171
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
SI+ A S GKQ+HA + K+ S++ QN L+ MY ++DA++VF +
Sbjct: 172 GSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPM 231
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI-KPDGTTFLVVLSACCHAGFIDKGLQ 184
+DL+SW+S++ G + G+ EA+ ++M + P+ F L AC D G Q
Sbjct: 232 KDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQ 291
Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
L S A ++ + R GFLN A + + R P + + +++
Sbjct: 292 IHGLCIK--SELAGNAIAGCSLCDMYARCGFLNSARRVFDQIER-PDTASWNVIIAGLAN 348
Query: 245 HG--NREIAVRSAKRVLDLWPNDPAIYVLLSNVSK 277
+G + ++V S R P+ ++ LL +K
Sbjct: 349 NGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTK 383
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 5/223 (2%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y+RC + V+ + + SWN IIAG N G ++A+ FS+MR +G D ++
Sbjct: 315 YARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISL 374
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM-D 124
S++ A +G Q+H+ I K G+ +++ V N L+ MY C + +F +
Sbjct: 375 RSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRN 434
Query: 125 ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
D VSWN++L C H E ++LF+ M +E +PD T +L C + G Q
Sbjct: 435 NADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQ 494
Query: 185 -YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226
+ Y ++ + P ++ + + G L +A +SM
Sbjct: 495 VHCYSLKTGLA---PEQFIKNGLIDMYAKCGSLGQARRIFDSM 534
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 1/183 (0%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-DID 61
I Y R + D V+ + ++ ISW++IIAGF LG +AL EM G+ +
Sbjct: 210 IAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPN 269
Query: 62 YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
+ S + A + G Q+H L K N L MYA CG +N A +VF
Sbjct: 270 EYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFD 329
Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181
++ D SWN ++ G A++GY+ EAV +F QM+ + PD + +L A + +
Sbjct: 330 QIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQ 389
Query: 182 GLQ 184
G+Q
Sbjct: 390 GMQ 392
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 3/169 (1%)
Query: 17 NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFS-EMRQAGIDIDYFTITSIVGAIGVI 75
+V S+++T + N I C +AL+ F + + I T S++ A
Sbjct: 23 SVVSTIKTEELM--NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSS 80
Query: 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
+G+++H I + + N ++ MY CG++ DA +VF M ER+LVS+ S++
Sbjct: 81 RSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVI 140
Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
G + +G EA++L+ +M + ++ PD F ++ AC + + G Q
Sbjct: 141 TGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQ 189
>sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat-containing protein At2g37320
OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1
Length = 500
Score = 208 bits (529), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 167/291 (57%), Gaps = 3/291 (1%)
Query: 17 NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76
V+ + RN +SW A+I+GF + LK +S+MR++ D + +T T+++ A
Sbjct: 176 KVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSG 235
Query: 77 GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLL 136
+G+ +H +G S + + N L+ MY CG + DA ++F +D+VSWNS++
Sbjct: 236 ALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIA 295
Query: 137 GCAHHGYSREAVQLFE-QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195
G A HG + +A++LFE M K+ KPD T+L VLS+C HAG + +G ++F LM
Sbjct: 296 GYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMAEHGL- 354
Query: 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255
P HY+ +V LLGR G L EA I +M P ++ +LL +C+VHG+ +R+A
Sbjct: 355 -KPELNHYSCLVDLLGRFGLLQEALELIENMPMKPNSVIWGSLLFSCRVHGDVWTGIRAA 413
Query: 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
+ L L P+ A +V L+N+ + W +A +R LM ++G++ PG SW+
Sbjct: 414 EERLMLEPDCAATHVQLANLYASVGYWKEAATVRKLMKDKGLKTNPGCSWI 464
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 75/132 (56%)
Query: 51 SEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC 110
S +++ G D + ++S V + G+ F+ G H L K G+ S+V++ + LV +Y
Sbjct: 109 SSVKRDGWSFDAYGLSSAVRSCGLNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDS 168
Query: 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170
G + +A KVF M ER++VSW +++ G A ++L+ +M+K+ P+ TF +L
Sbjct: 169 GEVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALL 228
Query: 171 SACCHAGFIDKG 182
SAC +G + +G
Sbjct: 229 SACTGSGALGQG 240
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFS-EMRQAGIDID 61
I Y +C D ++ ++ +SWN++IAG+ G QA++ F M ++G D
Sbjct: 263 ISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPD 322
Query: 62 YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
T ++ + KEG++ L+ + G + + LV + G + +A ++
Sbjct: 323 AITYLGVLSSCRHAGLVKEGRKFFNLMAEHGLKPELNHYSCLVDLLGRFGLLQEALELIE 382
Query: 122 SMDER-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162
+M + + V W SLL C HG ++ E ++ ++PD
Sbjct: 383 NMPMKPNSVIWGSLLFSCRVHGDVWTGIRAAE--ERLMLEPD 422
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 177/308 (57%), Gaps = 3/308 (0%)
Query: 1 LQILT-YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID 59
L +L+ Y C Q ++ ++ ++ +SWN +I G+ G ++AL F +M GI
Sbjct: 535 LSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQ 594
Query: 60 IDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
+ ++ + GA ++ + G++ HA K + + F+ L+ MYA G+I ++KV
Sbjct: 595 LCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKV 654
Query: 120 FSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
F+ + E+ SWN++++G HG ++EA++LFE+MQ+T PD TFL VL+AC H+G I
Sbjct: 655 FNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLI 714
Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFI-NSMSRNPGPSVYKAL 238
+GL+Y M++ L+ P +HY ++ +LGRAG L++A + MS ++K+L
Sbjct: 715 HEGLRYLDQMKSSFGLK-PNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 773
Query: 239 LSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298
LS+C++H N E+ + A ++ +L P P YVLLSN+ W+D +R M +R
Sbjct: 774 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 833
Query: 299 KKPGYSWV 306
K G SW+
Sbjct: 834 KDAGCSWI 841
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 5/176 (2%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDID 61
I Y+ C S D + V+ ++R++N WNA+I+ + ++ L+ F EM + D
Sbjct: 127 ITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPD 186
Query: 62 YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
+FT ++ A +S G +H L+ K G +VFV N LV Y G + DA ++F
Sbjct: 187 HFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFD 246
Query: 122 SMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE----IKPDGTTFLVVLSAC 173
M ER+LVSWNS++ + +G+S E+ L +M + PD T + VL C
Sbjct: 247 IMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVC 302
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 124/256 (48%), Gaps = 13/256 (5%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
+ +Y++C S Q V+ +R++ SWNA+I G +L +M+ +G+ D
Sbjct: 437 VASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDS 496
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
FT+ S++ A + + GK++H I + + ++FV ++ +Y CG + +F +
Sbjct: 497 FTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDA 556
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
M+++ LVSWN+++ G +G+ A+ +F QM I+ G + + V AC + G
Sbjct: 557 MEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG 616
Query: 183 LQYF-----YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA 237
+ +L+ +DA + +++ + + G + ++ N + S + A
Sbjct: 617 REAHAYALKHLLEDDAFIA-------CSLIDMYAKNGSITQSSKVFNGLKEKSTAS-WNA 668
Query: 238 LLSACQVHGNREIAVR 253
++ +HG + A++
Sbjct: 669 MIMGYGIHGLAKEAIK 684
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 3/189 (1%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYF 63
YS+C + Q ++ +N +SWN ++ GF G +M G D+ D
Sbjct: 337 YSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEV 396
Query: 64 TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
TI + V S K++H K + N V N V YA CG+++ A +VF +
Sbjct: 397 TILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGI 456
Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
+ + SWN+L+ G A R ++ QM+ + + PD T +LSAC + G
Sbjct: 457 RSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGK 516
Query: 184 Q-YFYLMRN 191
+ + +++RN
Sbjct: 517 EVHGFIIRN 525
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 6/172 (3%)
Query: 14 DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT-ITSIVGAI 72
D ++ + RN +SWN++I F + G E++ EM + D + + ++V +
Sbjct: 240 DALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVL 299
Query: 73 GVISGFKE---GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
V + +E GK +H K+ D + + N L+ MY+ CG I +A +F + +++V
Sbjct: 300 PVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVV 359
Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQK--TEIKPDGTTFLVVLSACCHAGFI 179
SWN+++ G + G + + QM ++K D T L + C H F+
Sbjct: 360 SWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL 411
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 94/203 (46%), Gaps = 14/203 (6%)
Query: 34 IAGFCNLGSGEQALKCFSEMRQAGIDID----YFTITSIVGAIGVISGFKE----GKQMH 85
I+ FC G +++ + E G D + + +G + SG ++ G+++H
Sbjct: 50 ISNFCETGDLDKSFRTVQEF--VGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIH 107
Query: 86 ALIF-KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
L+ ++ + R++ MYA+CG+ +D+ VF ++ ++L WN+++ + +
Sbjct: 108 QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELY 167
Query: 145 REAVQLF-EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY 203
E ++ F E + T++ PD T+ V+ AC + GL L+ +E +
Sbjct: 168 DEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGN- 226
Query: 204 TAIVGLLGRAGFLNEAESFINSM 226
A+V G GF+ +A + M
Sbjct: 227 -ALVSFYGTHGFVTDALQLFDIM 248
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 166/282 (58%), Gaps = 1/282 (0%)
Query: 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
+N ++WNA+I+G+ E LK F M + GI + ++S + +S + G+Q+
Sbjct: 247 KNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQI 306
Query: 85 HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
H ++ K ++V L+ MY CG + DA K+F M ++D+V+WN+++ G A HG +
Sbjct: 307 HQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNA 366
Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204
+A+ LF +M +I+PD TF+ VL AC HAG ++ G+ YF M D +E P+ +HYT
Sbjct: 367 DKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVE-PQPDHYT 425
Query: 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264
+V LLGRAG L EA I SM P +V+ LL AC+VH N E+A +A+++L L
Sbjct: 426 CMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQ 485
Query: 265 DPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
+ A YV L+N+ + + W+D +R M + K PGYSW+
Sbjct: 486 NAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWI 527
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 87/212 (41%), Gaps = 21/212 (9%)
Query: 31 NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
N IIA G + AL+ F MR TIT IG+ + H L +
Sbjct: 65 NKIIARCVRSGDIDGALRVFHGMRAKN------TITWNSLLIGISKDPSRMMEAHQLFDE 118
Query: 91 IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
I + + F N ++ Y A F M +D SWN+++ G A G +A +L
Sbjct: 119 IP-EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKAREL 177
Query: 151 F-EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRA-EHYTAIVG 208
F M+K E+ ++ ++S G ++K +F + P R +TA++
Sbjct: 178 FYSMMEKNEV-----SWNAMISGYIECGDLEKASHFF-------KVAPVRGVVAWTAMIT 225
Query: 209 LLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240
+A + AE+ M+ N + A++S
Sbjct: 226 GYMKAKKVELAEAMFKDMTVNKNLVTWNAMIS 257
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 14/137 (10%)
Query: 96 NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR--EAVQLFEQ 153
+F N+++ G I+ A +VF M ++ ++WNSLL+G + SR EA QLF++
Sbjct: 60 QIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDP-SRMMEAHQLFDE 118
Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR-NDASLEPPRAEHYTAIVGLLGR 212
+ +PD ++ ++LS +K +F M DA A T I G R
Sbjct: 119 IP----EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDA------ASWNTMITGYARR 168
Query: 213 AGFLNEAESFINSMSRN 229
E F + M +N
Sbjct: 169 GEMEKARELFYSMMEKN 185
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I Y +C D ++ ++ ++ ++WNA+I+G+ G+ ++AL F EM I D+
Sbjct: 326 ISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDW 385
Query: 63 FTITSIVGA 71
T +++ A
Sbjct: 386 ITFVAVLLA 394
>sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2
SV=1
Length = 895
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 175/303 (57%), Gaps = 5/303 (1%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
YS+C S + VY + + +S +++I+G+ G + F +M +G +D F I
Sbjct: 596 YSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAI 655
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
+SI+ A + G Q+HA I KIG + V + L+ MY+ G+I+D K FS ++
Sbjct: 656 SSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQING 715
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
DL++W +L+ A HG + EA+Q++ M++ KPD TF+ VLSAC H G +++ Y
Sbjct: 716 PDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEE--SY 773
Query: 186 FYL--MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243
F+L M D +EP HY +V LGR+G L EAESFIN+M P V+ LL+AC+
Sbjct: 774 FHLNSMVKDYGIEPEN-RHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACK 832
Query: 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303
+HG E+ +AK+ ++L P+D Y+ LSN+ WD+ + R LM G++K+PG+
Sbjct: 833 IHGEVELGKVAAKKAIELEPSDAGAYISLSNILAEVGEWDEVEETRKLMKGTGVQKEPGW 892
Query: 304 SWV 306
S V
Sbjct: 893 SSV 895
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 123/272 (45%), Gaps = 34/272 (12%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++C + V+S + + +SW +++G+ AL+ F EMR +G++I+ T+
Sbjct: 295 YAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTV 354
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
TS++ A G S E Q+HA +FK G+ + V L+ MY+ G I+ + +VF +D+
Sbjct: 355 TSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDD 414
Query: 126 ---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC--------C 174
+++V N ++ + +A++LF +M + ++ D + +LS
Sbjct: 415 IQRQNIV--NVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCLNLGKQV 472
Query: 175 HAGFIDKGL--------QYFYLMRNDASLEP--------PRAEH--YTAIVGLLGRAGFL 216
H + GL F L SLE P ++ + +++ G+L
Sbjct: 473 HGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYL 532
Query: 217 NEAESFINSM---SRNPGPSVYKALLSACQVH 245
EA + M +P S A+L+ C H
Sbjct: 533 REAIGLFSEMLDDGTSPDESTLAAVLTVCSSH 564
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 31 NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90
N +I F +A++ F+ M Q G+ D F++ S+ + V+ GKQ+H K
Sbjct: 422 NVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSL---LSVLDCLNLGKQVHGYTLK 478
Query: 91 IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL 150
G ++ V + L +Y+ CG++ ++ K+F + +D W S++ G +GY REA+ L
Sbjct: 479 SGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGL 538
Query: 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
F +M PD +T VL+ C + +G
Sbjct: 539 FSEMLDDGTSPDESTLAAVLTVCSSHPSLPRG 570
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 33/273 (12%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
YS+C S + ++ + ++ W ++I+GF G +A+ FSEM G D T+
Sbjct: 495 YSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTL 554
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
+++ GK++H + G D + + + LV MY+ CG++ A +V+ + E
Sbjct: 555 AAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPE 614
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ- 184
D VS +SL+ G + HG ++ LF M + D +L A + G Q
Sbjct: 615 LDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQV 674
Query: 185 YFYLMRNDASLEP----------------------------PRAEHYTAIVGLLGRAGFL 216
+ Y+ + EP P +TA++ + G
Sbjct: 675 HAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKA 734
Query: 217 NEAESFINSMSR---NPGPSVYKALLSACQVHG 246
NEA N M P + +LSAC HG
Sbjct: 735 NEALQVYNLMKEKGFKPDKVTFVGVLSACS-HG 766
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 117/251 (46%), Gaps = 8/251 (3%)
Query: 13 LDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIV 69
L F++ Y R + N WN IIAG + F EM D +T +S++
Sbjct: 199 LRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVL 258
Query: 70 GAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV 129
A + + GK + A + K G + +VFV +V +YA CG + +A +VFS + +V
Sbjct: 259 AACASLEKLRFGKVVQARVIKCGAE-DVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVV 317
Query: 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ-YFYL 188
SW +L G + A+++F++M+ + ++ + T V+SAC + + Q + ++
Sbjct: 318 SWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWV 377
Query: 189 MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNR 248
++ L+ A A++ + ++G ++ +E + ++ ++++
Sbjct: 378 FKSGFYLDSSVA---AALISMYSKSGDIDLSEQVFEDLDDIQRQNIVNVMITSFSQSKKP 434
Query: 249 EIAVRSAKRVL 259
A+R R+L
Sbjct: 435 GKAIRLFTRML 445
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 16/234 (6%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
YS S D ++ ++ + +S N +I+G+ E++L+ FS+M G + + +
Sbjct: 94 YSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKMHFLGFEANEISY 153
Query: 66 TSIVGAIGVISG--FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123
S++ A + F E H + K+GY V++ L+ +++ DA KVF
Sbjct: 154 GSVISACSALQAPLFSELVCCHTI--KMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDS 211
Query: 124 DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183
++ WN+++ G + LF +M KPD T+ VL+AC + L
Sbjct: 212 LSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAACASL----EKL 267
Query: 184 QYFYLMRNDASLEPPRAEHY---TAIVGLLGRAGFLNEAESFINSMSRNPGPSV 234
++ +++ A + AE TAIV L + G + EA + SR P PSV
Sbjct: 268 RFGKVVQ--ARVIKCGAEDVFVCTAIVDLYAKCGHMAEA---MEVFSRIPNPSV 316
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 96 NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155
+VF+ L+ Y+ G++ DA K+F ++ + D+VS N ++ G H E+++ F +M
Sbjct: 83 DVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKMH 142
Query: 156 KTEIKPDGTTFLVVLSAC 173
+ + ++ V+SAC
Sbjct: 143 FLGFEANEISYGSVISAC 160
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 170/300 (56%), Gaps = 3/300 (1%)
Query: 9 CDSSLDFQNVYSSVRTRNQISWNAIIAGFC-NLGSGEQALKCFSEMRQAGIDIDYFTITS 67
CD D + V+ + + + + WN +I+G+ N E+A+K F +M++ G D +
Sbjct: 291 CDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVC 350
Query: 68 IVGAIGVISGFKEGKQMHALIFKIGYDSN-VFVQNRLVFMYAICGAINDANKVFSSMDER 126
+ A +S + KQ+H L K SN + V N L+ +Y G + DA VF M E
Sbjct: 351 VTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPEL 410
Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186
+ VS+N ++ G A HG+ EA+ L+++M + I P+ TF+ VLSAC H G +D+G +YF
Sbjct: 411 NAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYF 470
Query: 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHG 246
M+ +EP AEHY+ ++ LLGRAG L EAE FI++M PG + ALL AC+ H
Sbjct: 471 NTMKETFKIEP-EAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHK 529
Query: 247 NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
N +A R+A ++ + P YV+L+N+ W++ +R M + IRKKPG SW+
Sbjct: 530 NMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWI 589
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 126/261 (48%), Gaps = 8/261 (3%)
Query: 19 YSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78
Y R+++SWN++I + G +AL + EM G ID FT+ S++ A+ +
Sbjct: 197 YGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHL 256
Query: 79 KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN---DANKVFSSMDERDLVSWNSLL 135
G+Q H + K G+ N V + L+ Y+ CG + D+ KVF + DLV WN+++
Sbjct: 257 IGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMI 316
Query: 136 LGCA-HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194
G + + S EAV+ F QMQ+ +PD +F+ V SAC + + Q + + +
Sbjct: 317 SGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQ-IHGLAIKSH 375
Query: 195 LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
+ R A++ L ++G L +A + M S + ++ HG+ A+
Sbjct: 376 IPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVS-FNCMIKGYAQHGHGTEALLL 434
Query: 255 AKRVLD--LWPNDPAIYVLLS 273
+R+LD + PN +LS
Sbjct: 435 YQRMLDSGIAPNKITFVAVLS 455
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 11/175 (6%)
Query: 16 QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA---- 71
+ ++ + + +S+N +I+G+ + A+ F MR+ G ++D FT++ ++ A
Sbjct: 94 RQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDR 153
Query: 72 IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-RDLVS 130
+ +I KQ+H G+DS V N V Y+ G + +A VF MDE RD VS
Sbjct: 154 VDLI------KQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVS 207
Query: 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
WNS+++ H +A+ L+++M K D T VL+A + G Q+
Sbjct: 208 WNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQF 262
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 94 DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
+ NVF N +V YA I+ A ++F + + D VS+N+L+ G A + A+ LF++
Sbjct: 71 EPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKR 130
Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA 213
M+K + DG T +++ACC + K L F + S A V +
Sbjct: 131 MRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVN----NAFVTYYSKG 186
Query: 214 GFLNEAESFINSM 226
G L EA S M
Sbjct: 187 GLLREAVSVFYGM 199
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I Y + + D + V+ + N +S+N +I G+ G G +AL + M +GI +
Sbjct: 388 ISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNK 447
Query: 63 FTITSIVGAIGVISGFKEGKQMHALI---FKIGYDSNVFVQNRLVFMYAICGAINDANKV 119
T +++ A EG++ + FKI ++ + + ++ + G + +A +
Sbjct: 448 ITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHY--SCMIDLLGRAGKLEEAERF 505
Query: 120 FSSMDERD-LVSWNSLLLGCAHH 141
+M + V+W +LL C H
Sbjct: 506 IDAMPYKPGSVAWAALLGACRKH 528
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 170/301 (56%), Gaps = 1/301 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++C D ++SS+ T + ++WN +I+ G L+ ++MR++ + D T
Sbjct: 453 YAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATF 512
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
+ ++ + GK++H + + GY+S + + N L+ MY+ CG + ++++VF M
Sbjct: 513 LVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSR 572
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
RD+V+W ++ +G +A++ F M+K+ I PD F+ ++ AC H+G +D+GL
Sbjct: 573 RDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLAC 632
Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
F M+ ++ P EHY +V LL R+ +++AE FI +M P S++ ++L AC+
Sbjct: 633 FEKMKTHYKID-PMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTS 691
Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
G+ E A R ++R+++L P+DP +L SN A WD IR + ++ I K PGYSW
Sbjct: 692 GDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSW 751
Query: 306 V 306
+
Sbjct: 752 I 752
Score = 111 bits (278), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 95/171 (55%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
I Y++C + ++V++S+ ++ +SWN+II+G+ G +A+K F M D+
Sbjct: 349 IDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADH 408
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
T ++ ++ K GK +H+ K G ++ V N L+ MYA CG + D+ K+FSS
Sbjct: 409 ITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSS 468
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
M D V+WN+++ C G +Q+ QM+K+E+ PD TFLV L C
Sbjct: 469 MGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMC 519
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 87/148 (58%)
Query: 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84
+N WN+II F G +AL+ + ++R++ + D +T S++ A + + G +
Sbjct: 69 KNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLV 128
Query: 85 HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYS 144
+ I +G++S++FV N LV MY+ G + A +VF M RDLVSWNSL+ G + HGY
Sbjct: 129 YEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYY 188
Query: 145 REAVQLFEQMQKTEIKPDGTTFLVVLSA 172
EA++++ +++ + I PD T VL A
Sbjct: 189 EEALEIYHELKNSWIVPDSFTVSSVLPA 216
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 1/170 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
YSR + V+ + R+ +SWN++I+G+ + G E+AL+ + E++ + I D FT+
Sbjct: 151 YSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTV 210
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
+S++ A G + K+G+ +H K G +S V V N LV MY DA +VF MD
Sbjct: 211 SSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDV 270
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175
RD VS+N+++ G E+V++F + + KPD T VL AC H
Sbjct: 271 RDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACGH 319
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 6/197 (3%)
Query: 68 IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-R 126
I A+ S E +++HAL+ +G DS+ F +L+ Y+ + VF + +
Sbjct: 10 ISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAK 69
Query: 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL-QY 185
++ WNS++ + +G EA++ + +++++++ PD TF V+ AC AG D +
Sbjct: 70 NVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKAC--AGLFDAEMGDL 127
Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
Y D E A+V + R G L A + M S + +L+S H
Sbjct: 128 VYEQILDMGFESDLFVG-NALVDMYSRMGLLTRARQVFDEMPVRDLVS-WNSLISGYSSH 185
Query: 246 GNREIAVRSAKRVLDLW 262
G E A+ + + W
Sbjct: 186 GYYEEALEIYHELKNSW 202
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 162/283 (57%), Gaps = 1/283 (0%)
Query: 24 TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83
+N ++W IIAG+ G ++A + +M +G+ D + SI+ A G +
Sbjct: 277 AKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMR 336
Query: 84 MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGY 143
+H+++ + SN +V N L+ MYA CG + A VF+ + ++DLVSWN++L G HG+
Sbjct: 337 IHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGH 396
Query: 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY 203
+EA++LF +M++ I+PD TF+ VL +C HAG ID+G+ YFY M L P+ EHY
Sbjct: 397 GKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLV-PQVEHY 455
Query: 204 TAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263
+V LLGR G L EA + +M P ++ ALL AC++H +IA ++ L P
Sbjct: 456 GCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDP 515
Query: 264 NDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
DP Y LLSN+ A + W+ DIR+ M + G+ K G S V
Sbjct: 516 CDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSV 558
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 2/144 (1%)
Query: 18 VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77
V++ V+ N N++I QA FSEM++ G+ D FT ++ A S
Sbjct: 73 VFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSW 132
Query: 78 FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICG--AINDANKVFSSMDERDLVSWNSLL 135
K MH I K+G S+++V N L+ Y+ CG + DA K+F M ERD VSWNS+L
Sbjct: 133 LPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSML 192
Query: 136 LGCAHHGYSREAVQLFEQMQKTEI 159
G G R+A +LF++M + ++
Sbjct: 193 GGLVKAGELRDARRLFDEMPQRDL 216
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 117/259 (45%), Gaps = 19/259 (7%)
Query: 6 YSRCDS--SLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF 63
YSRC D ++ + R+ +SWN+++ G G A + F EM Q + I +
Sbjct: 162 YSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDL-ISWN 220
Query: 64 TITSIVGAIGVISGFKEGKQMHAL--IFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS 121
T+ + G+ ++M +F+ + N + +V Y+ G + A +F
Sbjct: 221 TM---------LDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFD 271
Query: 122 SM--DERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179
M +++V+W ++ G A G +EA +L +QM + +K D + +L+AC +G +
Sbjct: 272 KMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLL 331
Query: 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239
G++ +++ S A A++ + + G L +A N + + S + +L
Sbjct: 332 SLGMRIHSILKR--SNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVS-WNTML 388
Query: 240 SACQVHGNREIAVRSAKRV 258
VHG+ + A+ R+
Sbjct: 389 HGLGVHGHGKEAIELFSRM 407
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 4/156 (2%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++C + +V++ + ++ +SWN ++ G G G++A++ FS MR+ GI D T
Sbjct: 360 YAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTF 419
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR--LVFMYAICGAINDANKVFSSM 123
+++ + EG + K+ YD V++ LV + G + +A KV +M
Sbjct: 420 IAVLCSCNHAGLIDEGIDYFYSMEKV-YDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTM 478
Query: 124 D-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158
E ++V W +LL C H A ++ + + K +
Sbjct: 479 PMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLD 514
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%)
Query: 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLL 135
+ + KQ+HA I + ++ + +L+ ++C N A +VF+ + E ++ NSL+
Sbjct: 30 ANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLI 89
Query: 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC 173
A + +A +F +MQ+ + D T+ +L AC
Sbjct: 90 RAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKAC 127
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 176/301 (58%), Gaps = 1/301 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y+R + ++ + + +SW A+I+G+ +G +A+ F EM+ AGI+ D ++
Sbjct: 185 YARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISL 244
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
S++ + + + GK +H + G+ V N L+ MY+ CG I+ A ++F M+
Sbjct: 245 ISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEG 304
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
+D++SW++++ G A+HG + A++ F +MQ+ ++KP+G TFL +LSAC H G +GL+Y
Sbjct: 305 KDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRY 364
Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
F +MR D +E P+ EHY ++ +L RAG L A +M P ++ +LLS+C+
Sbjct: 365 FDMMRQDYQIE-PKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTP 423
Query: 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305
GN ++A+ + +++L P D YVLL+N+ W+D +R ++ N ++K PG S
Sbjct: 424 GNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSL 483
Query: 306 V 306
+
Sbjct: 484 I 484
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 113/281 (40%), Gaps = 38/281 (13%)
Query: 9 CDSSLDFQ---NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFT 64
CD D +++ V N +N+II + + ++ + ++ + ++ D FT
Sbjct: 52 CDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFT 111
Query: 65 ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124
+ + + GKQ+H + K G +V +N L+ MY + DA+KVF M
Sbjct: 112 FPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMY 171
Query: 125 ERDLVSWNSLLLGCAHHGYSR-------------------------------EAVQLFEQ 153
ERD++SWNSLL G A G + EA+ F +
Sbjct: 172 ERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFRE 231
Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA 213
MQ I+PD + + VL +C G ++ G L+ A++ + +
Sbjct: 232 MQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGV--CNALIEMYSKC 289
Query: 214 GFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRS 254
G +++A M S + ++S HGN A+ +
Sbjct: 290 GVISQAIQLFGQMEGKDVIS-WSTMISGYAYHGNAHGAIET 329
>sp|Q9FIH2|PP414_ARATH Pentatricopeptide repeat-containing protein At5g42450,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E102 PE=2
SV=1
Length = 517
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 172/297 (57%), Gaps = 8/297 (2%)
Query: 17 NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI-DYFTITSIVGAIGVI 75
+++ ++ R+ ++WNA+I GF G E+A+ F +M + G+ I + T + AI I
Sbjct: 180 SLFRAMPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLREGVVIPNESTFPCAITAISNI 239
Query: 76 SGFKEGKQMHALIFK-IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDLVSWN 132
+ GK +HA K +G NVFV N L+ Y+ CG + D+ F+ ++E R++VSWN
Sbjct: 240 ASHGAGKSIHACAIKFLGKRFNVFVWNSLISFYSKCGNMEDSLLAFNKLEEEQRNIVSWN 299
Query: 133 SLLLGCAHHGYSREAVQLFEQMQK-TEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191
S++ G AH+G EAV +FE+M K T ++P+ T L VL AC HAG I +G YF N
Sbjct: 300 SMIWGYAHNGRGEEAVAMFEKMVKDTNLRPNNVTILGVLFACNHAGLIQEGYMYFNKAVN 359
Query: 192 DASLEPP--RAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNRE 249
D +P EHY +V +L R+G EAE I SM +PG +KALL CQ+H N+
Sbjct: 360 DYD-DPNLLELEHYACMVDMLSRSGRFKEAEELIKSMPLDPGIGFWKALLGGCQIHSNKR 418
Query: 250 IAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306
+A +A ++L+L P D + YV+LSN A + W + IR M G+++ G SW+
Sbjct: 419 LAKLAASKILELDPRDVSSYVMLSNAYSAMENWQNVSLIRRKMKETGLKRFTGCSWI 475
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 32/189 (16%)
Query: 16 QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVI 75
V+ + + IS A+I F +A + F + GI + FT +++G+
Sbjct: 47 HKVFDEIPELDVISATAVIGRFVKESRHVEASQAFKRLLCLGIRPNEFTFGTVIGSSTTS 106
Query: 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK----------------- 118
K GKQ+H K+G SNVFV + ++ Y + DA +
Sbjct: 107 RDVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTDARRCFDDTRDPNVVSITNLI 166
Query: 119 --------------VFSSMDERDLVSWNSLLLGCAHHGYSREAVQLF-EQMQKTEIKPDG 163
+F +M ER +V+WN+++ G + G + EAV F + +++ + P+
Sbjct: 167 SGYLKKHEFEEALSLFRAMPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLREGVVIPNE 226
Query: 164 TTFLVVLSA 172
+TF ++A
Sbjct: 227 STFPCAITA 235
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 205 bits (522), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 166/302 (54%), Gaps = 1/302 (0%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y++ + + ++ + R+ +S AIIAG+ LG E+AL+ F + G+ +Y T
Sbjct: 198 YAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTY 257
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
S++ A+ ++ GKQ H + + +QN L+ MY+ CG ++ A ++F +M E
Sbjct: 258 ASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPE 317
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQ-KTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
R +SWN++L+G + HG RE ++LF M+ + +KPD T L VLS C H D GL
Sbjct: 318 RTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLN 377
Query: 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244
F M P EHY IV +LGRAG ++EA FI M P V +LL AC+V
Sbjct: 378 IFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRV 437
Query: 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
H + +I +R++++ P + YV+LSN+ + W D ++R +M + + K+PG S
Sbjct: 438 HLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRS 497
Query: 305 WV 306
W+
Sbjct: 498 WI 499
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 143/281 (50%), Gaps = 14/281 (4%)
Query: 3 ILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62
++ Y +CD D + V + +N +SW A+I+ + G +AL F+EM ++ +
Sbjct: 94 LIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNE 153
Query: 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS 122
FT +++ + SG GKQ+H LI K YDS++FV + L+ MYA G I +A ++F
Sbjct: 154 FTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFEC 213
Query: 123 MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182
+ ERD+VS +++ G A G EA+++F ++ + P+ T+ +L+A +D G
Sbjct: 214 LPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHG 273
Query: 183 LQ-YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSA 241
Q + +++R + P A +++ + + G L+ A ++M S + A+L
Sbjct: 274 KQAHCHVLRREL---PFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAIS-WNAMLVG 329
Query: 242 CQVHG-NREI-----AVRSAKRVLDLWPNDPAIYVLLSNVS 276
HG RE+ +R KRV P+ + +LS S
Sbjct: 330 YSKHGLGREVLELFRLMRDEKRV---KPDAVTLLAVLSGCS 367
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
Query: 34 IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY 93
I+ C+ G ++AL EM G ++ + +++ A ++G+++HA + K Y
Sbjct: 27 ISQLCSNGRLQEAL---LEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRY 83
Query: 94 DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQ 153
+++ RL+ Y C + DA KV M E+++VSW +++ + G+S EA+ +F +
Sbjct: 84 LPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAE 143
Query: 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184
M +++ KP+ TF VL++C A + G Q
Sbjct: 144 MMRSDGKPNEFTFATVLTSCIRASGLGLGKQ 174
>sp|Q9LR69|PPR8_ARATH Pentatricopeptide repeat-containing protein At1g03540
OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1
Length = 609
Score = 205 bits (522), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 171/302 (56%), Gaps = 6/302 (1%)
Query: 6 YSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65
Y +C S + + V++ + +N +SW+A++ G+C G E+A++ F EM + D +
Sbjct: 310 YGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEK----DLYCF 365
Query: 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE 125
+++ A ++ + GK++H + G NV V++ L+ +Y G I+ A++V+S M
Sbjct: 366 GTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSI 425
Query: 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185
R++++WN++L A +G EAV F M K IKPD +F+ +L+AC H G +D+G Y
Sbjct: 426 RNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTACGHTGMVDEGRNY 485
Query: 186 FYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH 245
F LM ++P EHY+ ++ LLGRAG EAE+ + S++ LL C +
Sbjct: 486 FVLMAKSYGIKPG-TEHYSCMIDLLGRAGLFEEAENLLERAECRNDASLWGVLLGPCAAN 544
Query: 246 GN-REIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYS 304
+ +A R AKR+++L P YVLLSN+ KA DA +IR LM RG+ K G S
Sbjct: 545 ADASRVAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALNIRKLMVRRGVAKTVGQS 604
Query: 305 WV 306
W+
Sbjct: 605 WI 606
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 121/240 (50%), Gaps = 4/240 (1%)
Query: 14 DFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG 73
+ + V+ ++ ISW ++++G+ +AL+ F EM G+D + FT++S V A
Sbjct: 115 ETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACS 174
Query: 74 VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS 133
+ + G+ H ++ G++ N F+ + L ++Y + DA +VF M E D++ W +
Sbjct: 175 ELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTA 234
Query: 134 LLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192
+L + + EA+ LF M + + + PDG+TF VL+AC + + +G + + +
Sbjct: 235 VLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITN 294
Query: 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252
E ++++ + G+ G + EA N MS+ S + ALL +G E A+
Sbjct: 295 GIGSNVVVE--SSLLDMYGKCGSVREARQVFNGMSKKNSVS-WSALLGGYCQNGEHEKAI 351
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 129/247 (52%), Gaps = 20/247 (8%)
Query: 13 LDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEM-RQAGIDIDYFTITSIVGA 71
+D + V+ + + I W A+++ F E+AL F M R G+ D T +++ A
Sbjct: 215 VDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTA 274
Query: 72 IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSW 131
G + K+GK++H + G SNV V++ L+ MY CG++ +A +VF+ M +++ VSW
Sbjct: 275 CGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSW 334
Query: 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF--YLM 189
++LL G +G +A+++F +M++ ++ GT VL AC + G + Y+
Sbjct: 335 SALLGGYCQNGEHEKAIEIFREMEEKDLYCFGT----VLKACAGLAAVRLGKEIHGQYVR 390
Query: 190 R---NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS-RNPGPSVYKALLSACQVH 245
R + +E +A++ L G++G ++ A + MS RN + A+LSA +
Sbjct: 391 RGCFGNVIVE-------SALIDLYGKSGCIDSASRVYSKMSIRN--MITWNAMLSALAQN 441
Query: 246 GNREIAV 252
G E AV
Sbjct: 442 GRGEEAV 448
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 114/308 (37%), Gaps = 42/308 (13%)
Query: 34 IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY 93
I C LG +A++ + + I S++ + F G Q HA + K G
Sbjct: 33 ILELCKLGQLTEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSGL 92
Query: 94 DSNVFVQNRLVFMYAICG-AINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFE 152
+++ V N L+ +Y G + + +VF +D +SW S++ G +A+++F
Sbjct: 93 ETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFV 152
Query: 153 QMQKTEIKPDGTTFLVVLSACCHAG---------------------FIDKGLQYFYLMRN 191
+M + + T + AC G FI L Y Y +
Sbjct: 153 EMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNR 212
Query: 192 DA--------SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN----PGPSVYKALL 239
+ + P +TA++ + EA +M R P S + +L
Sbjct: 213 EPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVL 272
Query: 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTL--MYNRGI 297
+AC GN + + L N V++ S D + G +R ++N G+
Sbjct: 273 TAC---GNLRRLKQGKEIHGKLITNGIGSNVVVE--SSLLDMYGKCGSVREARQVFN-GM 326
Query: 298 RKKPGYSW 305
KK SW
Sbjct: 327 SKKNSVSW 334
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,235,772
Number of Sequences: 539616
Number of extensions: 4375669
Number of successful extensions: 12989
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 9042
Number of HSP's gapped (non-prelim): 1960
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)