Query 046638
Match_columns 306
No_of_seqs 493 out of 1396
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 02:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.4E-56 3E-61 394.8 32.3 305 1-306 264-568 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1.1E-51 2.3E-56 371.7 32.0 303 1-306 429-731 (857)
3 PLN03218 maturation of RBCL 1; 100.0 7.2E-51 1.6E-55 362.6 35.2 298 1-301 477-789 (1060)
4 PLN03081 pentatricopeptide (PP 100.0 6.9E-51 1.5E-55 358.8 32.4 298 1-302 163-463 (697)
5 PLN03218 maturation of RBCL 1; 100.0 5.3E-50 1.2E-54 357.1 35.6 297 2-301 443-754 (1060)
6 PLN03077 Protein ECB2; Provisi 100.0 1E-48 2.2E-53 352.5 33.2 299 1-302 227-525 (857)
7 PRK11788 tetratricopeptide rep 100.0 1.6E-25 3.5E-30 186.1 30.4 294 5-303 44-355 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1E-23 2.3E-28 193.0 34.1 288 2-297 573-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 1.7E-23 3.6E-28 191.7 34.5 284 3-293 608-898 (899)
10 PRK11788 tetratricopeptide rep 99.9 5.8E-22 1.3E-26 164.8 30.4 258 33-295 41-311 (389)
11 PRK15174 Vi polysaccharide exp 99.9 1.8E-21 3.8E-26 170.0 33.4 282 6-293 52-379 (656)
12 PRK15174 Vi polysaccharide exp 99.9 1.3E-20 2.8E-25 164.6 34.1 274 3-294 117-402 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.7E-19 3.8E-24 157.8 34.1 288 4-296 135-497 (615)
14 TIGR00990 3a0801s09 mitochondr 99.9 3.3E-19 7.2E-24 156.0 33.7 227 64-295 333-571 (615)
15 KOG4626 O-linked N-acetylgluco 99.9 5.7E-21 1.2E-25 155.6 20.7 285 2-293 122-449 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 1.3E-20 2.7E-25 153.6 20.6 279 9-294 197-484 (966)
17 PRK11447 cellulose synthase su 99.9 3.5E-18 7.6E-23 158.9 35.1 187 5-193 278-525 (1157)
18 PF13429 TPR_15: Tetratricopep 99.9 7.4E-21 1.6E-25 150.6 13.4 258 32-294 13-276 (280)
19 PRK11447 cellulose synthase su 99.9 3E-18 6.4E-23 159.4 32.7 282 5-295 360-700 (1157)
20 PRK10049 pgaA outer membrane p 99.8 8.3E-17 1.8E-21 143.7 34.6 290 2-295 55-422 (765)
21 PRK10049 pgaA outer membrane p 99.8 5.3E-16 1.2E-20 138.6 33.4 291 2-295 89-456 (765)
22 PRK09782 bacteriophage N4 rece 99.8 2.4E-16 5.2E-21 141.7 30.4 261 26-296 476-741 (987)
23 PRK09782 bacteriophage N4 rece 99.8 1.2E-15 2.7E-20 137.2 33.9 282 6-295 386-706 (987)
24 PRK10747 putative protoheme IX 99.8 1.2E-15 2.6E-20 126.3 30.7 275 9-294 97-389 (398)
25 KOG1126 DNA-binding cell divis 99.8 5.3E-17 1.2E-21 133.6 22.1 275 12-295 335-620 (638)
26 PF13429 TPR_15: Tetratricopep 99.8 1.8E-18 3.9E-23 137.0 10.6 251 2-260 14-276 (280)
27 TIGR00540 hemY_coli hemY prote 99.8 9.3E-15 2E-19 121.7 29.9 280 7-293 95-397 (409)
28 PRK10747 putative protoheme IX 99.8 4.7E-15 1E-19 122.8 27.3 251 39-296 96-358 (398)
29 KOG2076 RNA polymerase III tra 99.7 8.2E-15 1.8E-19 124.6 28.4 283 8-293 151-510 (895)
30 TIGR00540 hemY_coli hemY prote 99.7 5.6E-15 1.2E-19 123.0 26.9 270 30-301 85-370 (409)
31 PRK14574 hmsH outer membrane p 99.7 6.6E-14 1.4E-18 123.8 33.0 160 135-294 299-478 (822)
32 PRK14574 hmsH outer membrane p 99.7 1.4E-13 3E-18 121.7 31.7 287 5-294 43-395 (822)
33 KOG1126 DNA-binding cell divis 99.7 2.8E-15 6E-20 123.6 19.2 253 3-265 360-624 (638)
34 KOG1155 Anaphase-promoting com 99.7 5E-14 1.1E-18 111.7 24.4 255 36-294 236-494 (559)
35 COG2956 Predicted N-acetylgluc 99.7 1.8E-13 4E-18 103.9 25.8 286 9-302 48-354 (389)
36 TIGR02521 type_IV_pilW type IV 99.7 5.6E-14 1.2E-18 108.4 23.6 198 95-294 29-231 (234)
37 KOG2003 TPR repeat-containing 99.7 9.1E-14 2E-18 110.4 23.7 271 5-281 428-709 (840)
38 KOG4422 Uncharacterized conser 99.7 1.8E-13 3.9E-18 107.8 24.6 241 18-262 198-463 (625)
39 KOG1155 Anaphase-promoting com 99.7 2.9E-13 6.4E-18 107.5 25.5 280 5-292 236-533 (559)
40 KOG0547 Translocase of outer m 99.7 1.9E-13 4.1E-18 109.2 24.2 162 127-293 393-564 (606)
41 KOG1173 Anaphase-promoting com 99.6 3.4E-13 7.4E-18 109.5 24.5 262 27-294 244-517 (611)
42 PRK12370 invasion protein regu 99.6 5.8E-13 1.3E-17 115.1 27.5 260 25-296 254-536 (553)
43 KOG1129 TPR repeat-containing 99.6 7.4E-14 1.6E-18 106.3 17.7 223 66-294 227-457 (478)
44 TIGR02521 type_IV_pilW type IV 99.6 7.5E-13 1.6E-17 102.0 23.4 197 28-260 32-231 (234)
45 KOG1840 Kinesin light chain [C 99.6 3.6E-13 7.9E-18 111.8 22.6 232 62-293 199-477 (508)
46 COG3071 HemY Uncharacterized e 99.6 1.5E-11 3.2E-16 96.2 29.8 283 9-300 97-395 (400)
47 PRK12370 invasion protein regu 99.6 4.2E-13 9.1E-18 115.9 23.8 227 61-294 255-501 (553)
48 COG2956 Predicted N-acetylgluc 99.6 2.7E-12 5.9E-17 97.6 24.4 251 37-292 45-308 (389)
49 KOG1129 TPR repeat-containing 99.6 1.5E-13 3.2E-18 104.7 16.1 230 31-264 227-461 (478)
50 COG3071 HemY Uncharacterized e 99.6 1.1E-11 2.4E-16 96.9 26.3 258 33-296 88-358 (400)
51 KOG2002 TPR-containing nuclear 99.6 7.2E-12 1.6E-16 107.9 26.8 231 61-297 413-677 (1018)
52 PRK11189 lipoprotein NlpI; Pro 99.6 3.1E-12 6.7E-17 101.8 22.5 227 40-276 39-281 (296)
53 KOG2003 TPR repeat-containing 99.6 3.2E-12 6.8E-17 101.8 22.1 255 36-295 428-689 (840)
54 KOG0495 HAT repeat protein [RN 99.6 8E-11 1.7E-15 97.8 29.9 289 6-305 594-888 (913)
55 KOG0495 HAT repeat protein [RN 99.5 8.7E-11 1.9E-15 97.6 29.1 282 4-289 414-708 (913)
56 KOG4422 Uncharacterized conser 99.5 4E-11 8.6E-16 94.9 25.3 220 2-227 213-460 (625)
57 KOG1173 Anaphase-promoting com 99.5 3.2E-11 6.9E-16 98.3 25.0 270 4-276 252-533 (611)
58 KOG2002 TPR-containing nuclear 99.5 3.3E-11 7.1E-16 104.0 26.3 289 3-295 277-593 (1018)
59 KOG1840 Kinesin light chain [C 99.5 1.3E-11 2.8E-16 102.8 22.7 232 29-260 201-478 (508)
60 KOG0547 Translocase of outer m 99.5 4.2E-11 9.1E-16 96.1 24.1 151 140-294 338-490 (606)
61 PF12569 NARP1: NMDA receptor- 99.5 5E-11 1.1E-15 100.3 25.7 258 35-298 12-294 (517)
62 PRK11189 lipoprotein NlpI; Pro 99.5 5.8E-11 1.2E-15 94.6 25.0 215 76-297 40-267 (296)
63 COG3063 PilF Tfp pilus assembl 99.5 4.6E-11 1E-15 86.9 21.7 199 65-267 38-242 (250)
64 PF13041 PPR_2: PPR repeat fam 99.5 1.1E-13 2.3E-18 78.5 6.5 50 25-74 1-50 (50)
65 COG3063 PilF Tfp pilus assembl 99.5 5.1E-12 1.1E-16 91.8 16.6 195 98-294 36-235 (250)
66 PF13041 PPR_2: PPR repeat fam 99.5 1.1E-13 2.4E-18 78.5 6.5 50 126-175 1-50 (50)
67 KOG1915 Cell cycle control pro 99.5 3.8E-10 8.2E-15 90.5 26.8 251 39-297 153-502 (677)
68 KOG1174 Anaphase-promoting com 99.4 2.6E-10 5.6E-15 89.9 23.2 262 25-294 230-499 (564)
69 PF04733 Coatomer_E: Coatomer 99.4 1.3E-11 2.9E-16 96.9 15.9 248 7-266 12-270 (290)
70 KOG2076 RNA polymerase III tra 99.4 7.5E-10 1.6E-14 95.1 27.2 258 35-295 147-478 (895)
71 KOG4318 Bicoid mRNA stability 99.4 2.4E-11 5.1E-16 103.9 17.9 238 49-303 12-273 (1088)
72 PF12569 NARP1: NMDA receptor- 99.4 1.4E-09 3E-14 91.8 27.4 285 3-294 11-333 (517)
73 PF04733 Coatomer_E: Coatomer 99.4 1.9E-10 4E-15 90.5 19.0 246 34-295 8-265 (290)
74 KOG4340 Uncharacterized conser 99.4 6.4E-10 1.4E-14 84.2 20.3 284 2-291 16-335 (459)
75 KOG1125 TPR repeat-containing 99.3 7.7E-11 1.7E-15 96.4 15.7 215 72-293 295-525 (579)
76 KOG1174 Anaphase-promoting com 99.3 5.2E-09 1.1E-13 82.7 24.6 265 2-272 238-511 (564)
77 cd05804 StaR_like StaR_like; a 99.3 3E-08 6.5E-13 81.7 29.9 288 5-295 15-336 (355)
78 KOG1915 Cell cycle control pro 99.3 1.4E-08 3.1E-13 81.7 26.2 280 8-294 153-535 (677)
79 TIGR03302 OM_YfiO outer membra 99.3 1.6E-09 3.4E-14 83.8 19.0 183 95-295 31-232 (235)
80 KOG0624 dsRNA-activated protei 99.3 2.6E-08 5.7E-13 77.1 24.3 290 5-297 47-372 (504)
81 KOG4162 Predicted calmodulin-b 99.2 6.3E-08 1.4E-12 82.4 28.1 121 172-295 659-783 (799)
82 PLN02789 farnesyltranstransfer 99.2 1.5E-08 3.2E-13 80.9 22.7 208 35-278 45-267 (320)
83 cd05804 StaR_like StaR_like; a 99.2 2.8E-07 6E-12 76.0 29.2 267 26-295 5-293 (355)
84 KOG4318 Bicoid mRNA stability 99.2 4.4E-09 9.6E-14 90.5 18.5 234 23-281 21-286 (1088)
85 KOG1125 TPR repeat-containing 99.2 8.6E-09 1.9E-13 84.8 19.2 248 34-288 292-564 (579)
86 PRK10370 formate-dependent nit 99.2 5.6E-09 1.2E-13 77.7 16.9 151 104-266 23-178 (198)
87 KOG1156 N-terminal acetyltrans 99.2 2E-07 4.3E-12 78.0 27.0 283 7-297 52-436 (700)
88 KOG2047 mRNA splicing factor [ 99.1 6.8E-07 1.5E-11 75.0 29.1 214 76-293 361-613 (835)
89 KOG1070 rRNA processing protei 99.1 1.5E-08 3.3E-13 91.1 20.7 199 96-299 1457-1667(1710)
90 PLN02789 farnesyltranstransfer 99.1 2.9E-07 6.4E-12 73.6 26.3 203 4-212 45-267 (320)
91 PRK15359 type III secretion sy 99.1 8.5E-09 1.8E-13 72.8 15.1 124 148-278 13-138 (144)
92 KOG0548 Molecular co-chaperone 99.1 2.9E-07 6.2E-12 75.4 25.1 282 5-294 11-420 (539)
93 PRK04841 transcriptional regul 99.1 3.4E-07 7.5E-12 84.9 28.9 291 5-295 418-760 (903)
94 TIGR03302 OM_YfiO outer membra 99.1 2.7E-08 5.8E-13 76.9 18.3 66 26-93 32-101 (235)
95 PRK10370 formate-dependent nit 99.1 4.4E-08 9.5E-13 73.0 18.5 146 136-296 24-174 (198)
96 KOG1156 N-terminal acetyltrans 99.1 1.6E-07 3.4E-12 78.5 22.9 235 39-277 19-264 (700)
97 KOG0624 dsRNA-activated protei 99.0 7.3E-07 1.6E-11 69.4 23.3 261 5-268 81-377 (504)
98 KOG3081 Vesicle coat complex C 99.0 2.9E-07 6.2E-12 69.0 19.7 135 137-282 117-257 (299)
99 PRK15179 Vi polysaccharide bio 99.0 1.3E-07 2.9E-12 83.0 20.9 143 126-272 84-228 (694)
100 KOG1128 Uncharacterized conser 99.0 4.1E-08 8.9E-13 83.0 16.7 211 66-295 402-616 (777)
101 PRK14720 transcript cleavage f 99.0 5.7E-07 1.2E-11 80.1 24.1 229 24-277 28-268 (906)
102 KOG1128 Uncharacterized conser 99.0 2.4E-07 5.1E-12 78.6 20.3 189 93-297 394-584 (777)
103 COG5010 TadD Flp pilus assembl 99.0 1E-07 2.3E-12 71.2 16.3 154 101-258 70-228 (257)
104 PF12854 PPR_1: PPR repeat 99.0 1.7E-09 3.8E-14 55.1 4.4 33 92-124 2-34 (34)
105 KOG1070 rRNA processing protei 99.0 8.5E-07 1.8E-11 80.4 23.7 222 61-284 1457-1689(1710)
106 KOG2047 mRNA splicing factor [ 99.0 4.1E-06 9E-11 70.4 26.1 279 2-283 393-711 (835)
107 PRK04841 transcriptional regul 98.9 5.5E-06 1.2E-10 77.0 30.4 289 6-294 384-719 (903)
108 KOG4162 Predicted calmodulin-b 98.9 1.3E-06 2.8E-11 74.7 23.2 251 13-267 461-789 (799)
109 PRK15359 type III secretion sy 98.9 2.7E-08 5.8E-13 70.2 11.5 107 184-296 14-122 (144)
110 PRK15179 Vi polysaccharide bio 98.9 1.1E-06 2.4E-11 77.4 23.6 143 93-239 82-229 (694)
111 KOG2376 Signal recognition par 98.9 1.7E-05 3.8E-10 66.1 28.0 279 7-290 90-515 (652)
112 KOG3785 Uncharacterized conser 98.9 4.1E-06 8.9E-11 65.6 22.9 283 3-296 158-491 (557)
113 KOG4340 Uncharacterized conser 98.9 9.3E-08 2E-12 72.8 13.6 195 100-303 13-215 (459)
114 KOG0548 Molecular co-chaperone 98.9 1.8E-06 3.9E-11 70.9 21.5 237 30-278 227-472 (539)
115 KOG3060 Uncharacterized conser 98.9 3.3E-06 7.2E-11 63.0 20.8 190 76-269 26-228 (289)
116 TIGR02552 LcrH_SycD type III s 98.9 7.2E-08 1.6E-12 67.6 11.9 113 150-266 5-119 (135)
117 KOG3081 Vesicle coat complex C 98.9 1.1E-06 2.4E-11 65.9 18.2 215 72-296 18-237 (299)
118 COG5010 TadD Flp pilus assembl 98.9 4.6E-06 9.9E-11 62.6 21.0 159 66-229 70-231 (257)
119 PRK14720 transcript cleavage f 98.8 7.4E-07 1.6E-11 79.4 19.6 203 61-295 30-252 (906)
120 COG4783 Putative Zn-dependent 98.8 1.4E-06 3E-11 70.9 19.0 119 171-292 314-434 (484)
121 PF12854 PPR_1: PPR repeat 98.8 6.5E-09 1.4E-13 53.0 3.9 32 158-189 2-33 (34)
122 TIGR02552 LcrH_SycD type III s 98.8 2.7E-07 5.7E-12 64.7 13.4 99 197-295 14-114 (135)
123 KOG2376 Signal recognition par 98.8 1.3E-05 2.9E-10 66.8 23.7 124 131-257 379-516 (652)
124 PRK15363 pathogenicity island 98.8 3.1E-07 6.7E-12 64.1 12.4 97 199-295 34-132 (157)
125 KOG3617 WD40 and TPR repeat-co 98.8 3.3E-06 7.2E-11 73.0 20.4 231 4-260 736-995 (1416)
126 PF09976 TPR_21: Tetratricopep 98.8 6.8E-07 1.5E-11 63.3 14.1 125 165-291 14-143 (145)
127 KOG3616 Selective LIM binding 98.8 3.2E-06 6.9E-11 72.4 19.6 166 69-254 739-904 (1636)
128 TIGR02795 tol_pal_ybgF tol-pal 98.7 5.4E-07 1.2E-11 61.5 12.4 106 165-270 4-114 (119)
129 KOG3616 Selective LIM binding 98.7 1.9E-06 4E-11 73.7 17.6 165 104-289 739-905 (1636)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 9.7E-07 2.1E-11 72.1 15.5 127 98-228 170-296 (395)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.4E-07 7.4E-12 74.7 12.7 121 30-155 172-295 (395)
132 KOG0985 Vesicle coat protein c 98.7 2.6E-05 5.6E-10 69.2 23.5 245 4-278 1056-1325(1666)
133 PF09976 TPR_21: Tetratricopep 98.7 2E-06 4.3E-11 61.0 14.4 118 141-258 24-144 (145)
134 COG4783 Putative Zn-dependent 98.6 1.5E-05 3.2E-10 65.1 19.6 124 134-261 312-437 (484)
135 KOG3617 WD40 and TPR repeat-co 98.6 1.9E-05 4E-10 68.6 20.7 244 2-288 763-1057(1416)
136 KOG3060 Uncharacterized conser 98.6 1.5E-05 3.2E-10 59.6 17.3 180 112-296 27-221 (289)
137 KOG3785 Uncharacterized conser 98.5 6.6E-05 1.4E-09 59.1 20.0 161 103-275 63-228 (557)
138 cd00189 TPR Tetratricopeptide 98.5 1.5E-06 3.3E-11 56.3 9.8 92 203-294 3-96 (100)
139 TIGR00756 PPR pentatricopeptid 98.5 1.8E-07 4E-12 48.3 4.3 34 29-62 2-35 (35)
140 KOG1127 TPR repeat-containing 98.5 2.3E-05 4.9E-10 69.3 18.8 177 98-278 493-676 (1238)
141 PF12895 Apc3: Anaphase-promot 98.5 1.7E-07 3.8E-12 59.5 4.7 78 213-291 2-83 (84)
142 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.7E-06 5.9E-11 58.0 10.9 96 201-296 3-106 (119)
143 PF13414 TPR_11: TPR repeat; P 98.5 8E-07 1.7E-11 54.1 7.1 65 231-295 2-67 (69)
144 TIGR00756 PPR pentatricopeptid 98.5 3.1E-07 6.8E-12 47.4 4.4 34 129-162 1-34 (35)
145 KOG1130 Predicted G-alpha GTPa 98.5 1.2E-06 2.7E-11 69.8 9.4 259 35-294 25-343 (639)
146 PLN03088 SGT1, suppressor of 98.5 5.7E-06 1.2E-10 67.8 13.7 106 170-278 9-116 (356)
147 PRK10866 outer membrane biogen 98.5 0.0002 4.4E-09 55.3 21.1 56 170-225 182-237 (243)
148 PF13812 PPR_3: Pentatricopept 98.5 4E-07 8.8E-12 46.6 4.4 33 28-60 2-34 (34)
149 KOG1127 TPR repeat-containing 98.5 2.3E-05 5E-10 69.3 17.2 179 113-293 474-657 (1238)
150 KOG1914 mRNA cleavage and poly 98.4 0.00062 1.3E-08 56.7 23.9 119 179-300 347-469 (656)
151 PF13812 PPR_3: Pentatricopept 98.4 5.5E-07 1.2E-11 46.1 4.5 33 129-161 2-34 (34)
152 KOG0553 TPR repeat-containing 98.4 3.7E-06 8E-11 64.4 10.5 94 138-235 91-185 (304)
153 KOG0985 Vesicle coat protein c 98.4 0.0003 6.4E-09 62.9 23.1 212 25-255 982-1217(1666)
154 PLN03088 SGT1, suppressor of 98.4 1.6E-06 3.4E-11 71.0 9.2 92 205-296 7-100 (356)
155 PF13432 TPR_16: Tetratricopep 98.4 1.5E-06 3.3E-11 52.1 6.9 58 238-295 3-60 (65)
156 PRK10866 outer membrane biogen 98.4 0.00019 4.1E-09 55.4 19.6 56 238-293 181-239 (243)
157 cd00189 TPR Tetratricopeptide 98.4 7.9E-06 1.7E-10 52.8 10.2 92 169-263 6-99 (100)
158 PF05843 Suf: Suppressor of fo 98.4 3.7E-05 8E-10 60.8 15.3 134 129-266 2-141 (280)
159 PRK15363 pathogenicity island 98.4 1.5E-05 3.3E-10 55.8 11.4 97 26-124 34-130 (157)
160 KOG0550 Molecular chaperone (D 98.4 2.6E-05 5.7E-10 62.4 13.9 267 30-299 52-354 (486)
161 PRK02603 photosystem I assembl 98.3 2.4E-05 5.2E-10 57.2 12.9 130 127-280 34-165 (172)
162 PF12895 Apc3: Anaphase-promot 98.3 2.1E-06 4.5E-11 54.5 6.4 81 141-225 2-83 (84)
163 PRK02603 photosystem I assembl 98.3 3.1E-05 6.7E-10 56.6 13.4 131 26-178 34-166 (172)
164 COG4235 Cytochrome c biogenesi 98.3 2.6E-05 5.6E-10 60.1 12.6 105 197-301 153-262 (287)
165 KOG2053 Mitochondrial inherita 98.3 0.0021 4.6E-08 56.8 25.4 216 7-229 20-255 (932)
166 PRK10153 DNA-binding transcrip 98.3 6.5E-05 1.4E-09 64.4 16.1 140 126-267 335-488 (517)
167 PF14938 SNAP: Soluble NSF att 98.3 0.00042 9.1E-09 55.1 19.5 172 29-228 37-224 (282)
168 KOG2053 Mitochondrial inherita 98.3 0.0018 3.9E-08 57.2 24.1 223 37-265 19-259 (932)
169 PF14938 SNAP: Soluble NSF att 98.3 4.6E-05 1E-09 60.5 13.8 161 131-293 78-264 (282)
170 KOG0553 TPR repeat-containing 98.3 9.2E-06 2E-10 62.3 9.0 112 169-283 87-200 (304)
171 PF14559 TPR_19: Tetratricopep 98.2 3.1E-06 6.8E-11 51.3 5.3 52 243-294 2-53 (68)
172 PF13432 TPR_16: Tetratricopep 98.2 5.3E-06 1.2E-10 49.7 6.2 61 206-266 3-65 (65)
173 PF05843 Suf: Suppressor of fo 98.2 3.4E-05 7.4E-10 61.0 12.3 129 164-295 2-136 (280)
174 CHL00033 ycf3 photosystem I as 98.2 4.9E-05 1.1E-09 55.4 12.1 60 131-190 38-99 (168)
175 PF08579 RPM2: Mitochondrial r 98.2 4.2E-05 9.2E-10 49.8 10.1 81 29-109 27-116 (120)
176 PF12688 TPR_5: Tetratrico pep 98.2 0.00016 3.4E-09 48.9 13.2 95 133-227 6-102 (120)
177 CHL00033 ycf3 photosystem I as 98.2 7.2E-05 1.6E-09 54.5 12.7 81 27-108 35-117 (168)
178 PF01535 PPR: PPR repeat; Int 98.2 2.7E-06 5.8E-11 42.4 3.4 29 29-57 2-30 (31)
179 PF01535 PPR: PPR repeat; Int 98.2 3.1E-06 6.7E-11 42.2 3.6 29 130-158 2-30 (31)
180 COG4700 Uncharacterized protei 98.2 0.00097 2.1E-08 47.9 16.9 125 160-287 86-214 (251)
181 PF13525 YfiO: Outer membrane 98.2 0.00034 7.3E-09 52.6 15.7 167 102-286 10-198 (203)
182 PF13525 YfiO: Outer membrane 98.1 0.0016 3.4E-08 49.0 19.0 182 29-219 7-197 (203)
183 PF13371 TPR_9: Tetratricopept 98.1 1.2E-05 2.7E-10 49.4 6.3 56 240-295 3-58 (73)
184 PF06239 ECSIT: Evolutionarily 98.1 5.9E-05 1.3E-09 55.5 10.3 98 15-112 33-153 (228)
185 PRK10803 tol-pal system protei 98.1 0.00011 2.4E-09 57.2 12.4 102 165-266 145-251 (263)
186 PRK15331 chaperone protein Sic 98.1 4.7E-05 1E-09 53.6 8.7 88 170-260 44-133 (165)
187 PF12688 TPR_5: Tetratrico pep 98.1 0.00028 6.1E-09 47.6 12.2 92 33-124 7-102 (120)
188 PF13414 TPR_11: TPR repeat; P 98.1 1.5E-05 3.3E-10 48.3 5.7 65 199-263 2-69 (69)
189 COG4700 Uncharacterized protei 98.1 0.0019 4E-08 46.5 16.5 127 126-253 87-214 (251)
190 PRK10153 DNA-binding transcrip 98.0 0.00046 1E-08 59.3 16.1 136 158-297 332-484 (517)
191 PRK10803 tol-pal system protei 98.0 0.00013 2.9E-09 56.7 11.8 104 130-233 145-251 (263)
192 PF14559 TPR_19: Tetratricopep 98.0 1.6E-05 3.4E-10 48.1 5.3 54 213-266 4-59 (68)
193 PF10037 MRP-S27: Mitochondria 98.0 0.00017 3.7E-09 59.6 12.5 120 57-176 61-186 (429)
194 PF10037 MRP-S27: Mitochondria 98.0 5.6E-05 1.2E-09 62.4 9.1 108 3-110 73-186 (429)
195 COG3898 Uncharacterized membra 98.0 0.006 1.3E-07 49.1 23.7 274 7-295 95-392 (531)
196 KOG1130 Predicted G-alpha GTPa 98.0 0.00064 1.4E-08 54.8 14.2 254 6-260 27-343 (639)
197 KOG2796 Uncharacterized conser 97.9 0.0033 7.2E-08 47.8 16.0 135 130-264 179-318 (366)
198 PF03704 BTAD: Bacterial trans 97.9 0.00055 1.2E-08 48.5 11.9 115 174-302 17-137 (146)
199 KOG0550 Molecular chaperone (D 97.9 0.0034 7.3E-08 50.8 16.7 255 5-263 58-352 (486)
200 COG3898 Uncharacterized membra 97.9 0.0094 2E-07 48.1 26.1 252 29-291 84-354 (531)
201 COG4235 Cytochrome c biogenesi 97.8 0.0015 3.1E-08 50.8 13.9 117 145-265 139-260 (287)
202 PF04840 Vps16_C: Vps16, C-ter 97.8 0.0092 2E-07 48.0 19.0 107 131-256 180-286 (319)
203 PF04840 Vps16_C: Vps16, C-ter 97.8 0.012 2.6E-07 47.4 23.8 107 164-288 178-284 (319)
204 PF13371 TPR_9: Tetratricopept 97.8 0.00018 3.8E-09 44.1 7.2 63 208-270 3-67 (73)
205 PF13428 TPR_14: Tetratricopep 97.8 8.5E-05 1.9E-09 40.4 5.0 42 233-274 2-43 (44)
206 PF08579 RPM2: Mitochondrial r 97.8 0.00067 1.4E-08 44.4 9.5 86 67-175 30-116 (120)
207 KOG0543 FKBP-type peptidyl-pro 97.8 0.00076 1.7E-08 54.3 11.7 95 200-294 257-354 (397)
208 KOG2796 Uncharacterized conser 97.8 0.0018 3.8E-08 49.2 12.8 127 31-157 181-315 (366)
209 PF13424 TPR_12: Tetratricopep 97.7 0.00011 2.3E-09 45.8 5.2 60 234-293 7-73 (78)
210 PF13431 TPR_17: Tetratricopep 97.7 3.8E-05 8.2E-10 39.0 2.5 34 254-287 1-34 (34)
211 PF13281 DUF4071: Domain of un 97.7 0.02 4.4E-07 46.7 19.5 164 98-265 142-338 (374)
212 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 0.00027 5.9E-09 58.1 8.3 102 196-300 71-179 (453)
213 PRK15331 chaperone protein Sic 97.6 0.003 6.6E-08 44.7 11.5 94 134-231 43-136 (165)
214 COG1729 Uncharacterized protei 97.6 0.0015 3.2E-08 50.1 10.5 90 140-229 153-244 (262)
215 PF13424 TPR_12: Tetratricopep 97.5 0.00035 7.6E-09 43.5 5.7 24 165-188 48-71 (78)
216 KOG1914 mRNA cleavage and poly 97.5 0.049 1.1E-06 46.0 20.5 168 113-284 347-528 (656)
217 COG1729 Uncharacterized protei 97.5 0.0048 1E-07 47.4 12.0 103 165-268 144-251 (262)
218 PF13512 TPR_18: Tetratricopep 97.4 0.011 2.4E-07 40.9 12.4 58 171-228 18-75 (142)
219 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.0023 5.1E-08 52.8 10.6 65 162-229 74-141 (453)
220 PF13512 TPR_18: Tetratricopep 97.4 0.0045 9.7E-08 42.8 10.3 93 202-294 12-127 (142)
221 PF06239 ECSIT: Evolutionarily 97.4 0.0037 8E-08 46.3 10.4 96 118-215 35-153 (228)
222 KOG1585 Protein required for f 97.4 0.034 7.4E-07 42.0 15.9 201 64-289 33-250 (308)
223 KOG1538 Uncharacterized conser 97.4 0.083 1.8E-06 45.8 19.3 233 5-260 565-845 (1081)
224 KOG2280 Vacuolar assembly/sort 97.4 0.091 2E-06 46.2 20.1 112 161-289 682-793 (829)
225 PRK11906 transcriptional regul 97.3 0.011 2.4E-07 49.1 13.0 112 180-291 275-397 (458)
226 PF10300 DUF3808: Protein of u 97.3 0.053 1.2E-06 46.5 17.7 160 131-294 191-375 (468)
227 KOG3941 Intermediate in Toll s 97.3 0.0046 1E-07 47.6 9.8 109 15-123 53-185 (406)
228 KOG0543 FKBP-type peptidyl-pro 97.2 0.0076 1.6E-07 48.8 11.2 121 103-227 214-353 (397)
229 KOG2041 WD40 repeat protein [G 97.2 0.13 2.8E-06 45.1 19.0 240 24-294 689-951 (1189)
230 PF03704 BTAD: Bacterial trans 97.2 0.011 2.4E-07 41.8 10.6 59 130-189 64-122 (146)
231 PF07079 DUF1347: Protein of u 97.1 0.14 3E-06 42.6 24.0 62 232-294 460-523 (549)
232 smart00299 CLH Clathrin heavy 97.1 0.055 1.2E-06 37.9 14.8 125 66-211 11-136 (140)
233 COG3118 Thioredoxin domain-con 97.1 0.082 1.8E-06 41.3 14.7 52 174-228 145-196 (304)
234 KOG1920 IkappaB kinase complex 97.0 0.077 1.7E-06 49.1 16.3 135 108-259 919-1053(1265)
235 PF12921 ATP13: Mitochondrial 97.0 0.018 4E-07 39.3 10.0 53 158-211 47-99 (126)
236 COG0457 NrfG FOG: TPR repeat [ 97.0 0.094 2E-06 39.8 23.7 222 40-264 36-268 (291)
237 PF10300 DUF3808: Protein of u 97.0 0.16 3.4E-06 43.7 17.7 151 36-189 197-373 (468)
238 PF13281 DUF4071: Domain of un 97.0 0.16 3.4E-06 41.7 18.8 30 199-228 304-333 (374)
239 KOG1941 Acetylcholine receptor 97.0 0.15 3.2E-06 41.1 15.9 220 8-227 18-273 (518)
240 COG0457 NrfG FOG: TPR repeat [ 96.9 0.11 2.3E-06 39.5 27.3 219 75-294 36-264 (291)
241 PRK11906 transcriptional regul 96.9 0.14 3E-06 42.8 16.0 158 129-290 252-431 (458)
242 KOG4555 TPR repeat-containing 96.9 0.015 3.2E-07 39.3 8.5 90 172-264 52-147 (175)
243 PF07079 DUF1347: Protein of u 96.8 0.22 4.8E-06 41.4 21.6 255 5-266 15-332 (549)
244 KOG1538 Uncharacterized conser 96.8 0.31 6.7E-06 42.5 19.5 255 27-297 556-848 (1081)
245 PRK11619 lytic murein transgly 96.8 0.36 7.8E-06 43.2 25.6 116 177-292 255-372 (644)
246 COG4105 ComL DNA uptake lipopr 96.8 0.16 3.4E-06 39.0 18.5 56 238-293 173-231 (254)
247 KOG1941 Acetylcholine receptor 96.8 0.05 1.1E-06 43.7 11.8 222 37-260 16-274 (518)
248 PF04053 Coatomer_WDAD: Coatom 96.8 0.087 1.9E-06 44.6 14.1 158 36-227 270-429 (443)
249 COG3118 Thioredoxin domain-con 96.8 0.18 4E-06 39.4 16.0 117 107-227 144-263 (304)
250 PF00515 TPR_1: Tetratricopept 96.8 0.0035 7.7E-08 31.6 3.8 32 233-264 2-33 (34)
251 PF04053 Coatomer_WDAD: Coatom 96.6 0.1 2.2E-06 44.2 13.5 155 6-189 271-428 (443)
252 PF07719 TPR_2: Tetratricopept 96.6 0.0065 1.4E-07 30.5 4.2 32 234-265 3-34 (34)
253 KOG2610 Uncharacterized conser 96.6 0.16 3.5E-06 40.5 13.3 156 108-266 114-283 (491)
254 KOG4555 TPR repeat-containing 96.6 0.077 1.7E-06 36.0 10.0 88 36-124 52-142 (175)
255 COG4649 Uncharacterized protei 96.6 0.058 1.2E-06 38.6 9.8 136 25-161 57-200 (221)
256 PF04184 ST7: ST7 protein; In 96.5 0.41 8.8E-06 40.5 16.6 99 167-266 263-380 (539)
257 PF12921 ATP13: Mitochondrial 96.5 0.079 1.7E-06 36.3 10.1 51 126-176 50-101 (126)
258 COG5107 RNA14 Pre-mRNA 3'-end 96.4 0.37 7.9E-06 40.2 14.8 144 27-174 397-546 (660)
259 COG4785 NlpI Lipoprotein NlpI, 96.3 0.29 6.2E-06 36.6 15.3 160 129-295 100-266 (297)
260 KOG2114 Vacuolar assembly/sort 96.3 0.47 1E-05 42.6 15.9 180 63-258 335-516 (933)
261 KOG2610 Uncharacterized conser 96.2 0.11 2.5E-06 41.3 10.6 161 139-300 114-281 (491)
262 PF04184 ST7: ST7 protein; In 96.2 0.65 1.4E-05 39.3 17.1 164 33-209 174-340 (539)
263 COG4105 ComL DNA uptake lipopr 96.2 0.41 8.9E-06 36.8 20.4 56 37-92 44-101 (254)
264 KOG1920 IkappaB kinase complex 96.2 1.2 2.5E-05 41.9 18.8 84 166-260 942-1027(1265)
265 COG3629 DnrI DNA-binding trans 96.1 0.041 8.8E-07 43.0 8.0 59 235-293 156-214 (280)
266 PF08631 SPO22: Meiosis protei 96.1 0.53 1.1E-05 37.4 22.5 159 129-292 85-272 (278)
267 KOG4234 TPR repeat-containing 96.1 0.052 1.1E-06 39.8 7.5 104 169-272 101-208 (271)
268 COG2976 Uncharacterized protei 96.0 0.39 8.4E-06 35.3 13.1 133 129-263 55-190 (207)
269 COG4649 Uncharacterized protei 96.0 0.35 7.6E-06 34.8 12.6 133 127-260 58-195 (221)
270 COG2976 Uncharacterized protei 96.0 0.4 8.7E-06 35.2 12.8 88 137-228 98-187 (207)
271 PF13428 TPR_14: Tetratricopep 96.0 0.043 9.4E-07 29.5 5.5 27 131-157 4-30 (44)
272 smart00299 CLH Clathrin heavy 96.0 0.34 7.3E-06 33.9 15.7 127 131-278 10-137 (140)
273 PF09205 DUF1955: Domain of un 96.0 0.3 6.5E-06 33.3 14.9 141 138-298 12-152 (161)
274 PF13170 DUF4003: Protein of u 95.9 0.39 8.4E-06 38.4 12.8 50 43-92 78-133 (297)
275 KOG2114 Vacuolar assembly/sort 95.9 1.3 2.7E-05 40.1 20.3 172 3-189 341-516 (933)
276 PF02259 FAT: FAT domain; Int 95.8 0.85 1.9E-05 37.5 20.9 33 246-278 272-304 (352)
277 KOG1464 COP9 signalosome, subu 95.8 0.65 1.4E-05 36.1 17.6 244 8-257 39-328 (440)
278 COG5107 RNA14 Pre-mRNA 3'-end 95.8 1 2.2E-05 37.8 20.8 135 126-264 395-534 (660)
279 PF13431 TPR_17: Tetratricopep 95.7 0.018 3.9E-07 29.0 3.0 32 85-117 2-33 (34)
280 PF13176 TPR_7: Tetratricopept 95.7 0.023 5.1E-07 29.0 3.5 24 235-258 2-25 (36)
281 KOG1585 Protein required for f 95.6 0.74 1.6E-05 35.2 16.9 28 28-55 32-59 (308)
282 PF09205 DUF1955: Domain of un 95.6 0.45 9.7E-06 32.5 14.1 62 131-193 89-150 (161)
283 KOG1586 Protein required for f 95.5 0.77 1.7E-05 34.8 13.6 51 214-264 128-186 (288)
284 PF13176 TPR_7: Tetratricopept 95.5 0.043 9.4E-07 28.0 4.1 26 29-54 1-26 (36)
285 PF08631 SPO22: Meiosis protei 95.5 0.99 2.1E-05 35.9 22.8 49 6-55 3-64 (278)
286 KOG2041 WD40 repeat protein [G 95.5 1.7 3.7E-05 38.6 22.1 253 9-277 747-1068(1189)
287 PF10602 RPN7: 26S proteasome 95.5 0.27 5.9E-06 36.0 9.6 59 202-260 38-101 (177)
288 KOG3941 Intermediate in Toll s 95.4 0.3 6.5E-06 38.1 9.8 104 60-179 65-174 (406)
289 PF13181 TPR_8: Tetratricopept 95.4 0.033 7.2E-07 27.9 3.5 30 234-263 3-32 (34)
290 PF07035 Mic1: Colon cancer-as 95.2 0.77 1.7E-05 33.1 13.2 133 47-189 14-146 (167)
291 PF02259 FAT: FAT domain; Int 95.2 1.5 3.2E-05 36.2 15.8 61 234-294 148-212 (352)
292 KOG1258 mRNA processing protei 95.2 1.9 4.1E-05 37.4 20.1 181 96-280 296-489 (577)
293 KOG1258 mRNA processing protei 95.2 1.9 4.2E-05 37.4 24.2 98 198-295 295-395 (577)
294 PF10602 RPN7: 26S proteasome 95.1 0.44 9.6E-06 34.9 9.7 64 27-90 36-101 (177)
295 COG3629 DnrI DNA-binding trans 95.1 0.41 8.9E-06 37.6 9.9 77 29-106 155-236 (280)
296 COG1747 Uncharacterized N-term 95.0 2 4.3E-05 36.7 18.8 176 26-211 65-250 (711)
297 PF00637 Clathrin: Region in C 94.8 0.024 5.2E-07 39.9 2.5 128 68-215 13-140 (143)
298 PF00515 TPR_1: Tetratricopept 94.7 0.099 2.1E-06 26.1 4.1 29 28-56 2-30 (34)
299 KOG2280 Vacuolar assembly/sort 94.7 3 6.6E-05 37.3 20.3 281 2-293 443-771 (829)
300 KOG1550 Extracellular protein 94.6 3 6.4E-05 37.0 23.4 275 12-295 228-538 (552)
301 KOG4648 Uncharacterized conser 94.6 0.21 4.5E-06 40.0 7.3 91 172-265 106-198 (536)
302 TIGR02561 HrpB1_HrpK type III 94.6 0.18 3.9E-06 35.2 6.1 79 202-282 9-94 (153)
303 PF13174 TPR_6: Tetratricopept 94.5 0.1 2.2E-06 25.7 3.7 27 238-264 6-32 (33)
304 PF09613 HrpB1_HrpK: Bacterial 94.4 1.2 2.7E-05 31.7 12.8 53 174-229 21-73 (160)
305 PRK09687 putative lyase; Provi 94.3 2.1 4.7E-05 34.0 28.0 234 21-274 31-275 (280)
306 PF00637 Clathrin: Region in C 94.3 0.042 9.1E-07 38.7 2.7 53 34-86 14-66 (143)
307 PRK09687 putative lyase; Provi 94.3 2.2 4.9E-05 33.9 23.9 221 5-243 46-278 (280)
308 KOG4648 Uncharacterized conser 94.3 0.19 4.1E-06 40.2 6.3 88 207-294 104-193 (536)
309 PRK15180 Vi polysaccharide bio 94.1 1 2.2E-05 38.1 10.4 89 173-264 333-423 (831)
310 PF11207 DUF2989: Protein of u 94.1 0.82 1.8E-05 33.9 8.9 75 145-220 123-198 (203)
311 PF07719 TPR_2: Tetratricopept 94.1 0.15 3.2E-06 25.3 3.9 29 267-295 2-30 (34)
312 PF10345 Cohesin_load: Cohesin 94.0 4.4 9.5E-05 36.5 23.0 264 26-290 58-428 (608)
313 PF13374 TPR_10: Tetratricopep 94.0 0.14 3.1E-06 26.8 3.9 27 234-260 4-30 (42)
314 PF06552 TOM20_plant: Plant sp 93.8 1.5 3.2E-05 31.9 9.6 61 230-297 66-138 (186)
315 KOG0276 Vesicle coat complex C 93.8 1.8 4E-05 37.6 11.5 100 139-258 648-747 (794)
316 cd00923 Cyt_c_Oxidase_Va Cytoc 93.7 0.79 1.7E-05 29.4 7.2 63 143-208 22-84 (103)
317 PF02284 COX5A: Cytochrome c o 93.7 0.77 1.7E-05 29.7 7.1 61 146-209 28-88 (108)
318 COG2909 MalT ATP-dependent tra 93.6 5.9 0.00013 36.4 21.6 216 73-291 426-684 (894)
319 COG4785 NlpI Lipoprotein NlpI, 93.5 2.5 5.4E-05 31.9 15.6 177 75-263 78-268 (297)
320 KOG1464 COP9 signalosome, subu 93.4 3 6.5E-05 32.6 16.6 199 24-223 23-254 (440)
321 KOG0276 Vesicle coat complex C 93.3 2.1 4.6E-05 37.3 11.2 102 107-227 647-748 (794)
322 KOG4642 Chaperone-dependent E3 93.3 0.66 1.4E-05 35.3 7.3 79 214-292 24-104 (284)
323 smart00028 TPR Tetratricopepti 93.2 0.25 5.3E-06 23.5 3.9 29 235-263 4-32 (34)
324 cd00923 Cyt_c_Oxidase_Va Cytoc 93.1 0.88 1.9E-05 29.1 6.7 46 44-89 24-69 (103)
325 COG1747 Uncharacterized N-term 93.1 5.3 0.00011 34.3 21.7 60 61-123 65-124 (711)
326 KOG4234 TPR repeat-containing 93.0 1.5 3.3E-05 32.5 8.6 88 72-159 105-199 (271)
327 PF09613 HrpB1_HrpK: Bacterial 93.0 2.4 5.3E-05 30.2 12.3 19 138-156 54-72 (160)
328 PF13374 TPR_10: Tetratricopep 92.9 0.35 7.5E-06 25.3 4.4 28 28-55 3-30 (42)
329 PF13170 DUF4003: Protein of u 92.9 4.1 8.9E-05 32.8 13.5 126 78-207 78-224 (297)
330 KOG4570 Uncharacterized conser 92.9 2.1 4.5E-05 34.2 9.8 103 91-194 58-166 (418)
331 COG3947 Response regulator con 92.9 3.9 8.5E-05 32.3 14.3 58 236-293 283-340 (361)
332 PF07721 TPR_4: Tetratricopept 92.5 0.18 4E-06 23.4 2.5 23 268-290 3-25 (26)
333 PF14853 Fis1_TPR_C: Fis1 C-te 92.5 0.45 9.7E-06 26.8 4.4 32 238-269 7-38 (53)
334 KOG0890 Protein kinase of the 92.5 15 0.00032 38.0 21.1 65 232-298 1670-1734(2382)
335 TIGR02561 HrpB1_HrpK type III 92.5 2.7 5.9E-05 29.5 11.0 51 176-229 23-73 (153)
336 PF13181 TPR_8: Tetratricopept 92.4 0.37 8.1E-06 23.8 3.8 29 267-295 2-30 (34)
337 PRK12798 chemotaxis protein; R 92.3 5.9 0.00013 33.1 21.4 190 109-298 124-327 (421)
338 PF13174 TPR_6: Tetratricopept 92.2 0.25 5.4E-06 24.2 2.9 28 268-295 2-29 (33)
339 PF04097 Nic96: Nup93/Nic96; 92.1 8.7 0.00019 34.6 17.3 40 1-40 116-158 (613)
340 PF04190 DUF410: Protein of un 92.1 4.8 0.0001 31.7 17.6 159 8-192 2-170 (260)
341 PF04097 Nic96: Nup93/Nic96; 92.0 9.1 0.0002 34.5 14.2 23 242-265 515-537 (613)
342 PRK10941 hypothetical protein; 91.9 1.3 2.8E-05 34.9 7.9 58 237-294 186-243 (269)
343 KOG1308 Hsp70-interacting prot 91.8 0.069 1.5E-06 42.5 0.8 117 173-293 124-242 (377)
344 COG4455 ImpE Protein of avirul 91.7 2.1 4.6E-05 32.2 8.2 71 102-172 6-81 (273)
345 PF11207 DUF2989: Protein of u 91.7 3.4 7.3E-05 30.8 9.3 69 79-148 123-198 (203)
346 TIGR02508 type_III_yscG type I 91.7 1.3 2.9E-05 28.6 6.2 59 35-100 47-105 (115)
347 KOG2396 HAT (Half-A-TPR) repea 91.6 8 0.00017 33.2 22.7 243 42-293 297-557 (568)
348 PRK15180 Vi polysaccharide bio 91.4 2.9 6.4E-05 35.5 9.6 89 136-228 331-419 (831)
349 COG2909 MalT ATP-dependent tra 91.4 12 0.00026 34.6 19.7 197 106-305 424-657 (894)
350 PF02284 COX5A: Cytochrome c o 91.3 0.87 1.9E-05 29.5 5.2 46 45-90 28-73 (108)
351 KOG4507 Uncharacterized conser 91.2 1.2 2.6E-05 38.6 7.4 98 175-274 619-718 (886)
352 PF07163 Pex26: Pex26 protein; 91.0 3.4 7.3E-05 32.4 8.9 83 69-151 90-181 (309)
353 TIGR03504 FimV_Cterm FimV C-te 90.7 0.45 9.7E-06 25.6 3.0 27 270-296 3-29 (44)
354 PF07035 Mic1: Colon cancer-as 90.5 5.2 0.00011 28.9 15.5 100 82-189 14-115 (167)
355 smart00386 HAT HAT (Half-A-TPR 90.4 0.98 2.1E-05 21.8 4.1 30 246-275 1-30 (33)
356 PF08424 NRDE-2: NRDE-2, neces 90.2 9 0.00019 31.3 16.2 78 145-226 48-128 (321)
357 TIGR03504 FimV_Cterm FimV C-te 90.2 1.2 2.6E-05 23.9 4.4 24 134-157 5-28 (44)
358 KOG0545 Aryl-hydrocarbon recep 90.0 4.9 0.00011 31.0 8.9 52 242-293 240-291 (329)
359 KOG1586 Protein required for f 90.0 7.3 0.00016 29.9 16.9 16 175-190 166-181 (288)
360 PF10579 Rapsyn_N: Rapsyn N-te 89.9 0.6 1.3E-05 28.6 3.4 45 244-288 18-65 (80)
361 PF06552 TOM20_plant: Plant sp 89.9 1.5 3.3E-05 31.8 6.0 35 247-281 50-84 (186)
362 COG4455 ImpE Protein of avirul 89.5 1.6 3.4E-05 32.9 6.0 73 203-275 4-81 (273)
363 KOG1550 Extracellular protein 89.3 15 0.00033 32.6 18.1 173 113-296 228-427 (552)
364 PF13929 mRNA_stabil: mRNA sta 89.0 10 0.00022 30.1 10.3 109 12-122 144-263 (292)
365 PF14561 TPR_20: Tetratricopep 88.7 2.6 5.7E-05 26.9 6.0 53 231-283 21-75 (90)
366 KOG4570 Uncharacterized conser 88.2 3.2 6.9E-05 33.2 7.1 98 26-125 63-163 (418)
367 PRK10941 hypothetical protein; 87.6 7.8 0.00017 30.7 9.1 67 203-269 184-252 (269)
368 PF07163 Pex26: Pex26 protein; 87.6 6.8 0.00015 30.8 8.4 83 104-186 90-181 (309)
369 KOG4507 Uncharacterized conser 87.2 2 4.3E-05 37.4 5.9 84 40-124 620-703 (886)
370 KOG2063 Vacuolar assembly/sort 87.0 27 0.00058 32.8 15.2 26 30-55 507-532 (877)
371 PF10579 Rapsyn_N: Rapsyn N-te 86.9 1.5 3.2E-05 26.9 3.8 15 206-220 49-63 (80)
372 PF10345 Cohesin_load: Cohesin 86.8 24 0.00052 31.9 19.6 192 25-226 28-251 (608)
373 PF10366 Vps39_1: Vacuolar sor 86.3 6.5 0.00014 26.1 6.9 27 130-156 41-67 (108)
374 TIGR02508 type_III_yscG type I 86.0 7.4 0.00016 25.3 9.4 87 77-167 20-106 (115)
375 KOG0551 Hsp90 co-chaperone CNS 85.9 6 0.00013 32.0 7.5 88 203-290 84-177 (390)
376 KOG2300 Uncharacterized conser 85.9 22 0.00047 30.6 14.2 152 136-290 331-509 (629)
377 PRK13800 putative oxidoreducta 85.5 35 0.00075 32.6 23.4 254 17-293 625-879 (897)
378 PF08311 Mad3_BUB1_I: Mad3/BUB 85.5 9.5 0.00021 26.2 8.3 42 250-291 81-124 (126)
379 KOG4077 Cytochrome c oxidase, 85.4 9.2 0.0002 26.1 7.1 60 146-208 67-126 (149)
380 KOG3364 Membrane protein invol 84.9 9.4 0.0002 26.5 7.1 70 199-268 31-107 (149)
381 PF04090 RNA_pol_I_TF: RNA pol 84.5 15 0.00032 27.5 11.6 28 130-157 43-70 (199)
382 COG5108 RPO41 Mitochondrial DN 84.4 9.5 0.00021 34.0 8.6 48 133-180 33-82 (1117)
383 PF14689 SPOB_a: Sensor_kinase 84.2 3.4 7.4E-05 24.2 4.4 44 12-55 6-51 (62)
384 PF09670 Cas_Cas02710: CRISPR- 84.0 24 0.00053 29.6 11.6 53 138-191 141-197 (379)
385 KOG2063 Vacuolar assembly/sort 83.4 41 0.00088 31.7 14.6 110 1-110 509-639 (877)
386 PF10255 Paf67: RNA polymerase 83.2 8.1 0.00018 32.5 7.6 26 267-292 165-190 (404)
387 KOG4077 Cytochrome c oxidase, 82.7 11 0.00023 25.8 6.6 42 83-124 70-111 (149)
388 COG5159 RPN6 26S proteasome re 82.0 24 0.00052 28.1 15.4 197 32-228 8-234 (421)
389 PF09986 DUF2225: Uncharacteri 81.9 20 0.00044 27.3 8.9 33 266-298 165-197 (214)
390 cd00280 TRFH Telomeric Repeat 81.5 13 0.00028 27.3 7.1 26 209-234 120-145 (200)
391 COG3947 Response regulator con 81.0 27 0.00058 28.0 15.0 60 165-227 281-340 (361)
392 KOG2066 Vacuolar assembly/sort 80.7 46 0.001 30.5 13.2 146 135-293 363-532 (846)
393 KOG3824 Huntingtin interacting 80.3 5.1 0.00011 32.0 5.2 57 212-268 128-186 (472)
394 PF04910 Tcf25: Transcriptiona 80.3 33 0.00072 28.6 13.5 57 238-294 109-167 (360)
395 KOG0376 Serine-threonine phosp 80.0 2.2 4.9E-05 36.0 3.4 100 169-271 10-111 (476)
396 PRK11619 lytic murein transgly 79.7 49 0.0011 30.2 25.4 224 76-300 255-510 (644)
397 COG5159 RPN6 26S proteasome re 79.5 30 0.00064 27.6 18.9 202 3-204 10-247 (421)
398 PF14689 SPOB_a: Sensor_kinase 79.3 5.2 0.00011 23.4 3.9 22 133-154 28-49 (62)
399 COG0735 Fur Fe2+/Zn2+ uptake r 79.2 20 0.00043 25.4 7.6 64 48-112 7-70 (145)
400 PF11846 DUF3366: Domain of un 78.9 13 0.00029 27.6 7.1 44 221-264 132-176 (193)
401 KOG1839 Uncharacterized protei 78.5 36 0.00078 33.1 10.7 134 126-259 971-1126(1236)
402 PF12862 Apc5: Anaphase-promot 78.3 15 0.00033 23.5 6.6 20 242-261 51-70 (94)
403 KOG2300 Uncharacterized conser 78.1 45 0.00097 28.9 17.5 177 105-281 331-540 (629)
404 cd08819 CARD_MDA5_2 Caspase ac 77.7 15 0.00033 23.2 7.2 37 109-146 48-84 (88)
405 PF13762 MNE1: Mitochondrial s 77.1 23 0.0005 25.0 10.5 76 101-176 43-128 (145)
406 KOG0376 Serine-threonine phosp 77.0 9.1 0.0002 32.5 6.0 106 135-245 11-118 (476)
407 PF00244 14-3-3: 14-3-3 protei 76.9 32 0.0007 26.7 10.2 57 134-190 7-64 (236)
408 KOG4279 Serine/threonine prote 76.7 62 0.0014 29.8 14.0 183 79-265 180-399 (1226)
409 COG5191 Uncharacterized conser 76.6 8.2 0.00018 30.9 5.3 76 198-273 105-183 (435)
410 PF12968 DUF3856: Domain of Un 76.5 21 0.00045 24.2 7.4 59 233-291 56-125 (144)
411 PF10366 Vps39_1: Vacuolar sor 76.3 18 0.00038 24.1 6.2 26 30-55 42-67 (108)
412 PF00244 14-3-3: 14-3-3 protei 75.6 35 0.00077 26.4 11.3 58 33-90 7-65 (236)
413 KOG3364 Membrane protein invol 75.4 14 0.00031 25.6 5.6 66 230-295 30-100 (149)
414 KOG4814 Uncharacterized conser 74.5 21 0.00045 31.9 7.6 86 210-295 364-457 (872)
415 PF11846 DUF3366: Domain of un 74.1 19 0.00041 26.8 6.8 29 199-227 143-171 (193)
416 PF04910 Tcf25: Transcriptiona 74.0 51 0.0011 27.5 16.3 58 134-191 109-167 (360)
417 COG4976 Predicted methyltransf 73.9 8.9 0.00019 29.3 4.7 59 209-267 4-64 (287)
418 cd00280 TRFH Telomeric Repeat 73.7 34 0.00073 25.3 7.6 46 238-284 117-162 (200)
419 KOG1308 Hsp70-interacting prot 73.1 8.5 0.00018 31.3 4.7 83 141-227 127-209 (377)
420 KOG2062 26S proteasome regulat 73.1 77 0.0017 29.1 15.5 119 173-293 511-633 (929)
421 PRK10564 maltose regulon perip 72.9 11 0.00023 30.2 5.2 39 130-168 259-297 (303)
422 PF08311 Mad3_BUB1_I: Mad3/BUB 72.8 28 0.0006 23.9 8.3 44 181-225 81-124 (126)
423 COG4976 Predicted methyltransf 72.7 8.9 0.00019 29.3 4.5 54 172-228 4-57 (287)
424 COG0735 Fur Fe2+/Zn2+ uptake r 72.6 28 0.00062 24.5 6.9 44 134-177 26-69 (145)
425 PF11838 ERAP1_C: ERAP1-like C 72.4 51 0.0011 26.8 18.5 79 145-228 147-229 (324)
426 PF09477 Type_III_YscG: Bacter 72.3 25 0.00055 23.3 10.1 87 76-166 20-106 (116)
427 PRK10564 maltose regulon perip 71.8 12 0.00025 30.0 5.2 37 29-65 259-295 (303)
428 PRK13800 putative oxidoreducta 71.0 1E+02 0.0022 29.6 26.0 16 164-179 790-805 (897)
429 PF09670 Cas_Cas02710: CRISPR- 71.0 63 0.0014 27.3 12.0 56 35-91 139-198 (379)
430 PF15469 Sec5: Exocyst complex 70.8 39 0.00085 24.8 8.1 26 281-306 154-179 (182)
431 PF11817 Foie-gras_1: Foie gra 70.7 27 0.00058 27.3 7.1 55 238-292 184-244 (247)
432 KOG0686 COP9 signalosome, subu 70.7 64 0.0014 27.2 12.6 166 2-171 156-352 (466)
433 PF12862 Apc5: Anaphase-promot 70.3 25 0.00055 22.5 6.0 21 170-190 48-68 (94)
434 KOG0890 Protein kinase of the 70.3 1.5E+02 0.0033 31.4 18.8 249 4-260 1428-1730(2382)
435 KOG4567 GTPase-activating prot 69.8 58 0.0013 26.4 9.8 70 82-152 263-342 (370)
436 PF11848 DUF3368: Domain of un 69.3 17 0.00036 19.9 4.9 32 38-69 13-44 (48)
437 PF12069 DUF3549: Protein of u 69.2 63 0.0014 26.6 12.4 137 2-140 172-310 (340)
438 PF09986 DUF2225: Uncharacteri 68.7 50 0.0011 25.2 10.8 25 205-229 170-194 (214)
439 PF14863 Alkyl_sulf_dimr: Alky 67.4 41 0.00088 23.7 6.8 64 217-283 58-121 (141)
440 KOG2066 Vacuolar assembly/sort 67.2 1.1E+02 0.0023 28.4 23.6 125 3-128 363-536 (846)
441 PF11768 DUF3312: Protein of u 67.0 91 0.002 27.5 10.4 19 4-22 416-434 (545)
442 PF02847 MA3: MA3 domain; Int 66.9 25 0.00055 23.3 5.6 23 31-53 6-28 (113)
443 KOG2396 HAT (Half-A-TPR) repea 66.6 89 0.0019 27.3 17.5 103 159-264 455-563 (568)
444 PF14853 Fis1_TPR_C: Fis1 C-te 66.2 21 0.00047 20.1 5.4 34 33-68 7-40 (53)
445 KOG4642 Chaperone-dependent E3 65.8 62 0.0013 25.2 11.4 81 72-154 20-104 (284)
446 PF11817 Foie-gras_1: Foie gra 65.6 29 0.00063 27.1 6.4 58 201-258 179-244 (247)
447 PF11663 Toxin_YhaV: Toxin wit 65.0 9.5 0.00021 26.3 3.1 21 41-61 109-129 (140)
448 COG2912 Uncharacterized conser 64.9 27 0.00059 27.5 5.9 53 240-292 189-241 (269)
449 KOG3807 Predicted membrane pro 64.6 78 0.0017 26.0 14.3 56 169-225 281-336 (556)
450 COG5108 RPO41 Mitochondrial DN 64.2 39 0.00084 30.5 7.2 71 1-74 33-115 (1117)
451 PF12796 Ank_2: Ankyrin repeat 64.1 22 0.00048 22.1 4.7 81 5-96 3-86 (89)
452 TIGR02270 conserved hypothetic 63.2 96 0.0021 26.5 26.0 233 33-290 44-276 (410)
453 PF04090 RNA_pol_I_TF: RNA pol 63.2 55 0.0012 24.6 7.0 28 201-228 42-69 (199)
454 PF13762 MNE1: Mitochondrial s 63.0 51 0.0011 23.3 9.3 83 28-110 40-128 (145)
455 PF15297 CKAP2_C: Cytoskeleton 62.8 28 0.0006 28.6 5.7 63 215-277 118-186 (353)
456 PF09454 Vps23_core: Vps23 cor 62.7 29 0.00062 20.6 4.5 32 26-57 7-38 (65)
457 PRK11639 zinc uptake transcrip 62.6 45 0.00099 24.3 6.5 44 135-178 32-75 (169)
458 PRK11639 zinc uptake transcrip 62.4 40 0.00087 24.5 6.2 61 53-114 17-77 (169)
459 KOG1839 Uncharacterized protei 62.3 1.6E+02 0.0034 29.2 11.1 153 137-289 941-1122(1236)
460 PF13934 ELYS: Nuclear pore co 62.0 71 0.0015 24.6 15.6 103 132-244 80-184 (226)
461 PRK14700 recombination factor 61.9 84 0.0018 25.4 9.4 50 63-112 124-176 (300)
462 PRK13342 recombination factor 61.8 1E+02 0.0022 26.3 18.0 48 130-177 229-279 (413)
463 KOG0292 Vesicle coat complex C 61.7 15 0.00033 34.0 4.5 44 212-258 655-698 (1202)
464 KOG1114 Tripeptidyl peptidase 61.6 1.5E+02 0.0033 28.3 14.5 26 202-227 1233-1258(1304)
465 PF09454 Vps23_core: Vps23 cor 61.6 31 0.00066 20.5 4.4 52 58-110 4-55 (65)
466 PF02184 HAT: HAT (Half-A-TPR) 61.2 19 0.00042 17.8 3.4 25 247-272 2-26 (32)
467 PF11663 Toxin_YhaV: Toxin wit 61.0 14 0.00029 25.6 3.2 31 74-106 107-137 (140)
468 PF07575 Nucleopor_Nup85: Nup8 60.9 19 0.00041 32.2 5.1 75 47-123 390-464 (566)
469 COG0790 FOG: TPR repeat, SEL1 60.4 86 0.0019 25.0 20.7 149 75-231 54-222 (292)
470 PF04190 DUF410: Protein of un 59.9 85 0.0018 24.8 16.6 82 198-295 88-170 (260)
471 PRK09462 fur ferric uptake reg 59.8 59 0.0013 23.0 7.8 61 52-113 7-68 (148)
472 COG0790 FOG: TPR repeat, SEL1 59.6 89 0.0019 24.9 20.6 182 109-298 53-269 (292)
473 cd08819 CARD_MDA5_2 Caspase ac 58.6 45 0.00097 21.2 7.2 63 149-219 23-85 (88)
474 PF07720 TPR_3: Tetratricopept 58.2 24 0.00052 17.9 4.1 13 242-254 11-23 (36)
475 KOG4521 Nuclear pore complex, 57.7 2E+02 0.0043 28.4 13.8 125 165-289 985-1125(1480)
476 cd07153 Fur_like Ferric uptake 57.2 30 0.00066 23.0 4.6 46 134-179 6-51 (116)
477 KOG0991 Replication factor C, 57.1 92 0.002 24.3 13.5 88 82-173 179-282 (333)
478 smart00777 Mad3_BUB1_I Mad3/BU 56.9 61 0.0013 22.2 7.1 42 249-290 80-123 (125)
479 KOG2471 TPR repeat-containing 56.9 1.4E+02 0.0029 26.2 13.9 107 172-279 249-382 (696)
480 KOG0403 Neoplastic transformat 56.0 1.3E+02 0.0029 25.9 9.7 100 102-214 514-616 (645)
481 KOG4567 GTPase-activating prot 55.9 1.1E+02 0.0023 25.0 7.7 69 184-256 264-342 (370)
482 cd08326 CARD_CASP9 Caspase act 55.6 29 0.00063 21.8 3.9 59 17-79 20-78 (84)
483 cd07153 Fur_like Ferric uptake 55.4 47 0.001 22.1 5.3 44 69-112 7-50 (116)
484 PF01475 FUR: Ferric uptake re 55.3 46 0.001 22.4 5.3 47 67-113 12-58 (120)
485 KOG2659 LisH motif-containing 55.2 95 0.0021 23.9 8.2 21 69-89 71-91 (228)
486 KOG1498 26S proteasome regulat 54.8 1.3E+02 0.0028 25.4 16.2 90 132-229 135-241 (439)
487 COG5187 RPN7 26S proteasome re 54.8 1.1E+02 0.0024 24.6 12.9 66 129-194 116-186 (412)
488 PF05944 Phage_term_smal: Phag 54.5 57 0.0012 22.6 5.5 32 63-94 49-80 (132)
489 PRK09857 putative transposase; 54.4 1.1E+02 0.0024 24.8 7.9 62 238-299 212-273 (292)
490 PF11838 ERAP1_C: ERAP1-like C 54.3 1.2E+02 0.0025 24.7 14.8 107 113-225 146-262 (324)
491 PF08424 NRDE-2: NRDE-2, neces 53.8 1.2E+02 0.0027 24.8 16.7 94 95-189 17-128 (321)
492 PF10475 DUF2450: Protein of u 53.7 1.2E+02 0.0025 24.5 9.7 169 16-188 49-222 (291)
493 PF03745 DUF309: Domain of unk 52.6 46 0.00099 19.5 6.3 48 138-185 9-61 (62)
494 KOG3677 RNA polymerase I-assoc 52.4 1.5E+02 0.0032 25.3 8.6 58 67-124 240-299 (525)
495 PF01475 FUR: Ferric uptake re 52.2 26 0.00056 23.6 3.6 46 133-178 12-57 (120)
496 KOG0687 26S proteasome regulat 51.6 1.4E+02 0.003 24.6 12.6 158 111-289 36-204 (393)
497 COG4259 Uncharacterized protei 51.5 66 0.0014 21.0 6.4 60 178-239 52-112 (121)
498 PF12968 DUF3856: Domain of Un 51.0 78 0.0017 21.6 8.0 62 199-260 54-128 (144)
499 PHA02875 ankyrin repeat protei 50.7 1.6E+02 0.0034 25.1 11.4 198 47-256 15-223 (413)
500 KOG3824 Huntingtin interacting 50.0 39 0.00085 27.3 4.6 53 173-228 126-178 (472)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-56 Score=394.83 Aligned_cols=305 Identities=31% Similarity=0.618 Sum_probs=297.9
Q ss_pred CchhhhhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhh
Q 046638 1 LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE 80 (306)
Q Consensus 1 ali~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (306)
+||++|+++|++++|.++|+.|+++|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046638 81 GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160 (306)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 160 (306)
|.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|.+||..+||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 344 a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHH
Q 046638 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240 (306)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 240 (306)
||..||+.++.+|++.|..++|.++|+.|.+..+..| +..+|+.++++|++.|++++|.+++++|...|+..+|+.++.
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP-RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLT 502 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999988666654 999999999999999999999999999998899999999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCCCcCC
Q 046638 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306 (306)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 306 (306)
+|...|+++.|..+++++.+..|++..+|..|+.+|.+.|++++|.+++++|.+.|+.+.|+.|||
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i 568 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEE
Confidence 999999999999999999999999889999999999999999999999999999999999999996
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-51 Score=371.72 Aligned_cols=303 Identities=36% Similarity=0.648 Sum_probs=294.6
Q ss_pred CchhhhhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhh
Q 046638 1 LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE 80 (306)
Q Consensus 1 ali~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (306)
+||++|+++|++++|.++|+.|.++|..+||++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH
Confidence 4789999999999999999999999999999999999999999999999999986 589999999999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046638 81 GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160 (306)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 160 (306)
+.+++..+.+.|+.++..+++.|+.+|++.|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.
T Consensus 508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHH
Q 046638 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240 (306)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 240 (306)
||..||+.++.+|++.|++++|.++|+.|.+..+..| +..+|+.++++|++.|++++|.+++++|..+|+..+|++|+.
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ 665 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN 665 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999996666654 999999999999999999999999999988899999999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCCCcCC
Q 046638 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSWV 306 (306)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 306 (306)
+|...|+.+.+....++++++.|+++..|..|...|...|+|++|.++.+.|+++|+.++|+.|||
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 999999999999999999999999999999999999999999999999999999999999999996
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.2e-51 Score=362.63 Aligned_cols=298 Identities=19% Similarity=0.267 Sum_probs=239.2
Q ss_pred CchhhhhhcCChHHHHhhhhhcc----CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc
Q 046638 1 LQILTYSRCDSSLDFQNVYSSVR----TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76 (306)
Q Consensus 1 ali~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (306)
+||++|++.|++++|.++|+.|. .||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 36777888888888888888775 46788888888888888888888888888888888888888888888888888
Q ss_pred chhhHHHHHHHHHH--cCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc----CCchhHHHHHHHHHhcCCHHHHHHH
Q 046638 77 GFKEGKQMHALIFK--IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE----RDLVSWNSLLLGCAHHGYSREAVQL 150 (306)
Q Consensus 77 ~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~ 150 (306)
++++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|++|.+ |+..+|+.+|.+|++.|++++|.++
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 88888888888865 56778888888888888888888888888888764 5667888888888888888888888
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--
Q 046638 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-- 228 (306)
Q Consensus 151 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 228 (306)
|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.+. +|+..+|+.++.+|++.|++++|.++|++|..
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~--~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI--KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 88888888888888888888888888888888888888877553 35888888888888888888888888888864
Q ss_pred -CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCC
Q 046638 229 -NPGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301 (306)
Q Consensus 229 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 301 (306)
.|+..+|+.+|.+|++.|++++|.++|++|.+ ..| +..+|..++.+|.+.|++++|.+++++|.+.|+.|+.
T Consensus 715 ~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 38888888888888888888888888888876 344 5678888888888888888888888888888887765
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.9e-51 Score=358.76 Aligned_cols=298 Identities=26% Similarity=0.429 Sum_probs=286.1
Q ss_pred CchhhhhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhh
Q 046638 1 LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE 80 (306)
Q Consensus 1 ali~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (306)
+|+++|+++|++++|.++|+.|+.||..+||.++.+|++.|++++|+++|++|.+.|+.||..+|..++.+|++.|+.+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046638 81 GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160 (306)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 160 (306)
+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|.++|+.+||+++.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHH
Q 046638 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240 (306)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 240 (306)
||..||+.++.+|++.|++++|.+++..|.+.+. +|+..+++.|+++|++.|++++|.++|++|. +||..+|+.||.
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~--~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~ 399 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF--PLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIA 399 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC--CCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHH
Confidence 9999999999999999999999999999998764 4699999999999999999999999999998 479999999999
Q ss_pred HHHhcCCHHHHHHHHHHHhh--cCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh-cCCCCCCC
Q 046638 241 ACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN-RGIRKKPG 302 (306)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~ 302 (306)
+|++.|+.++|.++|++|.+ ..| |..+|..++.+|.+.|++++|.++|+.|.+ .|+.|+..
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 99999999999999999998 455 678999999999999999999999999985 68888753
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.3e-50 Score=357.10 Aligned_cols=297 Identities=18% Similarity=0.275 Sum_probs=267.4
Q ss_pred chhhhhhcCChHHHHhhhhhcc----CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccc
Q 046638 2 QILTYSRCDSSLDFQNVYSSVR----TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 77 (306)
||.+|++.|++++|.++|+.|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 6788899999999999998875 478899999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcC------cCCchhHHHHHHHHHhcCCHHHHHHHH
Q 046638 78 FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD------ERDLVSWNSLLLGCAHHGYSREAVQLF 151 (306)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~ 151 (306)
+++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999884 478889999999999999999999999
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--
Q 046638 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-- 229 (306)
Q Consensus 152 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 229 (306)
++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.+. .|+..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv--~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV--KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999988664 358899999999999999999999999999863
Q ss_pred -CChhhHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCC
Q 046638 230 -PGPSVYKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301 (306)
Q Consensus 230 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 301 (306)
|+..+|+.++.+|++.|++++|.++|++|.+ ..| +..+|+.|+.+|++.|++++|.++|++|.+.|+.|+.
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 8899999999999999999999999999976 345 6789999999999999999999999999999998875
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-48 Score=352.46 Aligned_cols=299 Identities=23% Similarity=0.398 Sum_probs=285.6
Q ss_pred CchhhhhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhh
Q 046638 1 LQILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE 80 (306)
Q Consensus 1 ali~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (306)
+||.+|+++|++++|.++|+.|+.+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046638 81 GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160 (306)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 160 (306)
+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+||..+|++++.+|++.|++++|+++|++|.+.|+.
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHH
Q 046638 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240 (306)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 240 (306)
||..||+.++.+|++.|+++.|.++++.+.+.+. .|+..+++.|+++|++.|++++|.++|++|.. ++..+|+.++.
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~--~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~vs~~~mi~ 463 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGL--ISYVVVANALIEMYSKCKCIDKALEVFHNIPE-KDVISWTSIIA 463 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC--CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-CCeeeHHHHHH
Confidence 9999999999999999999999999999998765 35999999999999999999999999999984 68999999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCC
Q 046638 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPG 302 (306)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 302 (306)
+|.+.|+.++|..+|++|....++|..+|..++.+|.+.|..+.+.+++..|.+.|+.++..
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 99999999999999999998555577899999999999999999999999998888877643
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=1.6e-25 Score=186.08 Aligned_cols=294 Identities=11% Similarity=0.062 Sum_probs=244.5
Q ss_pred hhhhcCChHHHHhhhhhccC---cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHhccccch
Q 046638 5 TYSRCDSSLDFQNVYSSVRT---RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID---YFTITSIVGAIGVISGF 78 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 78 (306)
.+...|++++|...|+++.. .+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...+.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 35677999999999999853 3566889999999999999999999999987532222 24577888899999999
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcC--C------chhHHHHHHHHHhcCCHHHHHHH
Q 046638 79 KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER--D------LVSWNSLLLGCAHHGYSREAVQL 150 (306)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~a~~~ 150 (306)
++|..+|+++.+.. +++..+++.++.++.+.|++++|.+.++.+.+. + ...+..++..+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999864 346788999999999999999999999998752 2 12356677888999999999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C
Q 046638 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N 229 (306)
Q Consensus 151 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~ 229 (306)
|+++.+.... +...+..+...+.+.|++++|.++++++.+... .....+++.++.+|...|++++|...++++.. .
T Consensus 203 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 203 LKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDP--EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999876433 456778888999999999999999999986532 11246688999999999999999999999876 4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhh---cCChhhHHHHHHHHhhcCCCCCCCC
Q 046638 230 PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA---TDCWDDAGDIRTLMYNRGIRKKPGY 303 (306)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 303 (306)
|+...+..++..+.+.|++++|..+++++++..|+++ .+..++..+.. .|+.+++..++++|.+.++.|+|.+
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 7777778889999999999999999999999999765 55555555443 5689999999999999999999874
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=1e-23 Score=193.02 Aligned_cols=288 Identities=14% Similarity=0.066 Sum_probs=217.8
Q ss_pred chhhhhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch
Q 046638 2 QILTYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (306)
++..|.+.|++++|.++++.+. +.+...|..+...+...|++++|+..|+++.+.. +.+...+..+..++.+.|++
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 4677888999999999998874 3467788888899999999999999999888754 34566777888888888999
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046638 79 KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155 (306)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 155 (306)
++|...++++.+..+ .+..++..++..+...|++++|.++++.+.+ .+...+..++..+...|++++|...|+++.
T Consensus 652 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 652 AKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998887653 3577888888888888888888888888764 355667777778888888888888888887
Q ss_pred hcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChh
Q 046638 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPS 233 (306)
Q Consensus 156 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~ 233 (306)
..++ +..++..+..++.+.|++++|.+.++.+.+.. |.++.++..++..|...|++++|.+.|+++... +++.
T Consensus 731 ~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 805 (899)
T TIGR02917 731 KRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH---PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV 805 (899)
T ss_pred hhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH
Confidence 6643 33556667777778888888888877777643 456777777777888888888888888777652 4455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 046638 234 VYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 297 (306)
.+..+...+...|+ ++|+..++++++..|+++.++..++.++...|++++|.++++++.+.+.
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 66677777777777 6677777777777777777777777777777777777777777766443
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=1.7e-23 Score=191.69 Aligned_cols=284 Identities=11% Similarity=0.012 Sum_probs=175.9
Q ss_pred hhhhhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchh
Q 046638 3 ILTYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFK 79 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (306)
...|.+.|++++|.+.|+.+. +.+...+..+...+...|++++|..+|+++.+.. +.+..++..+...+...|+++
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 345566666666666666642 2345556666666666666666666666666542 233555666666666666666
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046638 80 EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157 (306)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 157 (306)
+|.++++.+.+.++ .+...+..++.++...|++++|.+.|+++.+ |+..++..++.++.+.|++++|.+.++++.+.
T Consensus 687 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 687 SAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66666666666543 3455566666666666666666666666553 44455556666666666666666666666654
Q ss_pred CCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhH
Q 046638 158 EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVY 235 (306)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 235 (306)
.+ .+...+..+...|...|++++|.++|+++.+.. |+++.++..++..+...|+ .+|+..++++... .++..+
T Consensus 766 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~ 840 (899)
T TIGR02917 766 HP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA---PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAIL 840 (899)
T ss_pred CC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHH
Confidence 33 245556666666666666666666666666543 3456666666666666666 5566666666542 233445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 236 KALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
..+...+...|++++|..+++++++..|.++.++..++.++.+.|++++|.+++++|.
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5556666666666666666666666666666666666666666666666666666654
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=5.8e-22 Score=164.81 Aligned_cols=258 Identities=13% Similarity=0.103 Sum_probs=218.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCcc---HHHHHHHHHHHHh
Q 046638 33 IIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN---VFVQNRLVFMYAI 109 (306)
Q Consensus 33 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 109 (306)
....+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..++..|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999864 23456788889999999999999999999988643222 3567889999999
Q ss_pred cCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH----HHHHHHHHHHHccCChHHH
Q 046638 110 CGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG----TTFLVVLSACCHAGFIDKG 182 (306)
Q Consensus 110 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a 182 (306)
.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999975 45678999999999999999999999999887654322 2455677788999999999
Q ss_pred HHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 046638 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG--PSVYKALLSACQVHGNREIAVRSAKRVL 259 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (306)
.+.++++.+.. |.+...+..++..+.+.|++++|.++++++... |+ ..++..++.+|...|++++|...++++.
T Consensus 200 ~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 200 RALLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998644 446778889999999999999999999999863 44 3467888999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 260 DLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 260 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
+..|+.. .+..++..+.+.|++++|.++++++.+.
T Consensus 277 ~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 277 EEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999764 5589999999999999999999988765
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.8e-21 Score=170.03 Aligned_cols=282 Identities=9% Similarity=-0.064 Sum_probs=125.0
Q ss_pred hhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHH
Q 046638 6 YSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGK 82 (306)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (306)
+.+.|++++|..+++... +.+...+..++.+....|++++|+..++++.+.. +.+...+..+...+...|++++|.
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 344455555555544432 1223333334444444555555555555554432 112233444444444455555555
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHH---------------------------------hcCcC---
Q 046638 83 QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS---------------------------------SMDER--- 126 (306)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~---------------------------------~~~~~--- 126 (306)
..++++.+..+ .+...+..++.++...|++++|...++ .+.+.
T Consensus 131 ~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~ 209 (656)
T PRK15174 131 DLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFAL 209 (656)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 55555544322 133444444444555555555555444 43321
Q ss_pred -CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHH----HHHHHHHHHhcCCCCCCcHh
Q 046638 127 -DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK----GLQYFYLMRNDASLEPPRAE 201 (306)
Q Consensus 127 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~ 201 (306)
+...+..+...+.+.|++++|...++++....+. +...+..+...+...|++++ |...|++..+.. |.+..
T Consensus 210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~---P~~~~ 285 (656)
T PRK15174 210 ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN---SDNVR 285 (656)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC---CCCHH
Confidence 1112222333444445555555555444443222 23334444444444554443 444444444322 33444
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhcCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhc
Q 046638 202 HYTAIVGLLGRAGFLNEAESFINSMSRN-PG-PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKAT 279 (306)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 279 (306)
++..++..+...|++++|...+++.... |+ ...+..+...+...|++++|...++++....|+++..+..++.++...
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence 4455555555555555555555444431 22 223334444445555555555555555555554443333344445555
Q ss_pred CChhhHHHHHHHHh
Q 046638 280 DCWDDAGDIRTLMY 293 (306)
Q Consensus 280 g~~~~a~~~~~~m~ 293 (306)
|+.++|...|++..
T Consensus 366 G~~deA~~~l~~al 379 (656)
T PRK15174 366 GKTSEAESVFEHYI 379 (656)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554444
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.3e-20 Score=164.62 Aligned_cols=274 Identities=11% Similarity=-0.004 Sum_probs=209.7
Q ss_pred hhhhhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchh
Q 046638 3 ILTYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFK 79 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (306)
...+.+.|++++|.+.+++.. +.+...+..+...+...|++++|...++.+...... +...+.. +..+...|+++
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~-~~~l~~~g~~~ 194 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIAT-CLSFLNKSRLP 194 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHcCCHH
Confidence 345677788888888777753 235667777778888888888888888877664322 2222322 23466778888
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHH----HHHHHH
Q 046638 80 EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSRE----AVQLFE 152 (306)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----a~~~~~ 152 (306)
+|...++.+++....++......++..+...|++++|+..|++..+ .+...+..+...+...|++++ |...|+
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 8888888887765444555556667888999999999999999875 356678889999999999986 899999
Q ss_pred HHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCC
Q 046638 153 QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPG 231 (306)
Q Consensus 153 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~ 231 (306)
+..+..+. +...+..+...+...|++++|...+++..... |.+...+..+..++.+.|++++|...|+++.. .|+
T Consensus 275 ~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~---P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 275 HALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH---PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 99887543 66788899999999999999999999998754 55778888999999999999999999999886 365
Q ss_pred hhh-HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 232 PSV-YKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 232 ~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
... +..+..++...|+.++|...|+++++..|++. ...+++|...+.+..+
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQIS 402 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHH
Confidence 543 34456778999999999999999999999753 2334455555555544
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=1.7e-19 Score=157.77 Aligned_cols=288 Identities=12% Similarity=-0.000 Sum_probs=232.0
Q ss_pred hhhhhcCChHHHHhhhhhcc--CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhH
Q 046638 4 LTYSRCDSSLDFQNVYSSVR--TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG 81 (306)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (306)
..|.+.|++++|++.|++.. .|+...|..+..+|...|++++|++.+++.++.+ +.+...+..+..++...|++++|
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 46788899999999999864 4678889999999999999999999999999864 23456788889999999999999
Q ss_pred HHHHHHHHHcCCCccH-----------------------------HHHHHH-----------------------------
Q 046638 82 KQMHALIFKIGYDSNV-----------------------------FVQNRL----------------------------- 103 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~-----------------------------~~~~~l----------------------------- 103 (306)
+..+..+...+...+. ..+..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (615)
T TIGR00990 214 LLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNG 293 (615)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccc
Confidence 8766544322110000 000000
Q ss_pred -HHHH------HhcCChHHHHHHHHhcCcC------CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 046638 104 -VFMY------AICGAINDANKVFSSMDER------DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170 (306)
Q Consensus 104 -~~~~------~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 170 (306)
+..+ ...+++++|.+.|++..+. ....|+.+...+...|++++|+..|++..+..+. ....|..+.
T Consensus 294 ~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la 372 (615)
T TIGR00990 294 QLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRA 372 (615)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence 0000 1125788999999988742 3456888888999999999999999999876432 456788889
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-C-ChhhHHHHHHHHHhcCCH
Q 046638 171 SACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-P-GPSVYKALLSACQVHGNR 248 (306)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~ 248 (306)
..+...|++++|...|+++.+.. |.++.++..++..+...|++++|...|++.... | +...+..+...+.+.|++
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLN---SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999988754 557889999999999999999999999999863 4 456677888889999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 249 EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 249 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
++|+..|+++++..|+++..+..++.++...|++++|++.|++..+..
T Consensus 450 ~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 450 ASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999887643
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=3.3e-19 Score=156.01 Aligned_cols=227 Identities=11% Similarity=-0.036 Sum_probs=164.4
Q ss_pred hHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHh
Q 046638 64 TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAH 140 (306)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 140 (306)
.+..+...+...|++++|+..+++.++..+. ....|..+..++...|++++|...|++..+ .+...|..+...+..
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3444455555667777777777777765432 355666777777777777777777776653 245677777788888
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHH
Q 046638 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220 (306)
Q Consensus 141 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (306)
.|++++|...|++..+..+. +...+..+..++.+.|++++|+..|++..+.. |.++.+++.+...+...|++++|+
T Consensus 412 ~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF---PEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred cCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHH
Confidence 88888888888887766433 45566677778888888888888888877643 446778888888888888888888
Q ss_pred HHHHHhcCC-CCh-hh-------HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHH
Q 046638 221 SFINSMSRN-PGP-SV-------YKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTL 291 (306)
Q Consensus 221 ~~~~~~~~~-~~~-~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 291 (306)
+.|++...- |+. .. ++..+..+...|++++|..++++++...|++...+..++.++.+.|++++|++.|++
T Consensus 488 ~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 488 EKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888887652 321 11 111122233468899999999999998898888888999999999999999999988
Q ss_pred Hhhc
Q 046638 292 MYNR 295 (306)
Q Consensus 292 m~~~ 295 (306)
..+.
T Consensus 568 A~~l 571 (615)
T TIGR00990 568 AAEL 571 (615)
T ss_pred HHHH
Confidence 7653
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=5.7e-21 Score=155.59 Aligned_cols=285 Identities=15% Similarity=0.112 Sum_probs=165.0
Q ss_pred chhhhhhcCChHHHHhhhhhccC---cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH-HHHHhccccc
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRT---RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS-IVGAIGVISG 77 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~ 77 (306)
+.+.+-..|+++.|+..++.+.+ .....|..+..++...|+.+.|.+.|.+.++. .|+.....+ +...+...|+
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Gr 199 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGR 199 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcc
Confidence 34667788999999999988643 46778888999999999999999998888774 455443322 2233334566
Q ss_pred hhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCC---chhHHHHHHHHHhc-------------
Q 046638 78 FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD---LVSWNSLLLGCAHH------------- 141 (306)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~------------- 141 (306)
+.+|...|.+.++..+ .-..+|..|...+-..|++..|+..|++..+-| ...|-.|...|...
T Consensus 200 l~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred cchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 6666666666555432 234455556666666666666666666555321 23444444444444
Q ss_pred ---------------------CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcH
Q 046638 142 ---------------------GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRA 200 (306)
Q Consensus 142 ---------------------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 200 (306)
|+.|-|+..|++.++..+. =...|+.+..++-..|+..+|...|.....-. |...
T Consensus 279 l~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~---p~ha 354 (966)
T KOG4626|consen 279 LNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC---PNHA 354 (966)
T ss_pred HhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC---CccH
Confidence 4555555555554433221 13345555555555555555555555554432 2344
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhcCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhh
Q 046638 201 EHYTAIVGLLGRAGFLNEAESFINSMSRN-PG-PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278 (306)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 278 (306)
.+.+.|...|...|.+++|..+|.....- |. ...++.|...|.++|++++|+..|++++++.|.-...|+.++..|..
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHH
Confidence 44555555555555555555555555442 22 23455555556666666666666666666666555566666666666
Q ss_pred cCChhhHHHHHHHHh
Q 046638 279 TDCWDDAGDIRTLMY 293 (306)
Q Consensus 279 ~g~~~~a~~~~~~m~ 293 (306)
.|+++.|++.+.+.+
T Consensus 435 ~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAI 449 (966)
T ss_pred hhhHHHHHHHHHHHH
Confidence 666666666554443
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.3e-20 Score=153.58 Aligned_cols=279 Identities=13% Similarity=0.123 Sum_probs=223.0
Q ss_pred cCChHHHHhhhhhcc--Cc-chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHhccccchhhHHHH
Q 046638 9 CDSSLDFQNVYSSVR--TR-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID-YFTITSIVGAIGVISGFKEGKQM 84 (306)
Q Consensus 9 ~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 84 (306)
.|++++|...+.+.. +| =...|+.|...+-.+|+...|+..|++.++. .|+ ...|-.|...|...+.+++|...
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred hcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 444555554444432 12 2445777777777778888888888777764 344 35677777778778888888888
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CC-chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 046638 85 HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RD-LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161 (306)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 161 (306)
|.+.....+. ...++..+...|...|.++-|+..|++..+ |+ ...|+.|..++-..|++.+|.+.|.+.......
T Consensus 275 Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~- 352 (966)
T KOG4626|consen 275 YLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN- 352 (966)
T ss_pred HHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-
Confidence 8777765432 456777777778888888888888888774 33 468999999999999999999999999876433
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCC-hhhHHHHH
Q 046638 162 DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPG-PSVYKALL 239 (306)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~ 239 (306)
...+.+.|...+...|.++.|..+|....+-. |.-...++.|...|-+.|++++|+..+++... +|+ ...|+.+.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~---p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmG 429 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVF---PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMG 429 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC---hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence 45677889999999999999999999887643 44677899999999999999999999999876 455 46799999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
..|-..|+.+.|+..+.+++..+|.-...+..|+..|...|+..+|+.-|++..+
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 9999999999999999999999999888999999999999999999999998876
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=3.5e-18 Score=158.93 Aligned_cols=187 Identities=7% Similarity=-0.043 Sum_probs=137.6
Q ss_pred hhhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHH------------HH
Q 046638 5 TYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID-YFTIT------------SI 68 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~------------~l 68 (306)
.+...|++++|+..|++.. +.+...+..+...+.+.|++++|+..|++..+...... ...+. ..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 4667899999999998863 34677888899999999999999999999887542211 11111 12
Q ss_pred HHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CC-chhHH-------------
Q 046638 69 VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RD-LVSWN------------- 132 (306)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~------------- 132 (306)
...+.+.|++++|...|+++++..+ .+...+..+..++...|++++|++.|+++.+ |+ ...+.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence 3356678899999999999988764 3567777888899999999999999988764 32 22222
Q ss_pred -----------------------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHH
Q 046638 133 -----------------------------SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183 (306)
Q Consensus 133 -----------------------------~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 183 (306)
.+...+...|++++|++.|++..+..+. +...+..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 1233455678889999999888876543 4566777888888999999999
Q ss_pred HHHHHHHhcC
Q 046638 184 QYFYLMRNDA 193 (306)
Q Consensus 184 ~~~~~~~~~~ 193 (306)
..++++.+..
T Consensus 516 ~~l~~al~~~ 525 (1157)
T PRK11447 516 ALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHcC
Confidence 9888876543
No 18
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.86 E-value=7.4e-21 Score=150.59 Aligned_cols=258 Identities=19% Similarity=0.157 Sum_probs=116.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 046638 32 AIIAGFCNLGSGEQALKCFSEMRQAGIDIDY-FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC 110 (306)
Q Consensus 32 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (306)
.+...+.+.|++++|++++++......+|+. ..|..+...+...++++.|.+.++++.+.+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4577888999999999999765554323444 44455566777889999999999999987654 66677778877 789
Q ss_pred CChHHHHHHHHhcCc--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHccCChHHHHHHHH
Q 046638 111 GAINDANKVFSSMDE--RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQYFY 187 (306)
Q Consensus 111 g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (306)
+++++|.+++++..+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999987753 566778888899999999999999999987543 34567778888999999999999999999
Q ss_pred HHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 046638 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265 (306)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 265 (306)
+..+.. |.+......++..+...|+.+++.++++..... .++..+..+..++...|+.++|...|++..+..|+|
T Consensus 171 ~al~~~---P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALELD---PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHcC---CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 999765 557888999999999999999988888877653 566678889999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 266 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
+.....++.++...|+.++|.++.++..+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999877643
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=3e-18 Score=159.39 Aligned_cols=282 Identities=8% Similarity=0.037 Sum_probs=174.1
Q ss_pred hhhhcCChHHHHhhhhhccC---cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH----------
Q 046638 5 TYSRCDSSLDFQNVYSSVRT---RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA---------- 71 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---------- 71 (306)
.+.+.|++++|++.|++... .+...+..+...+...|++++|++.|++..+... .+...+..+...
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHH
Confidence 46688999999999998643 4667788889999999999999999999987532 223333333332
Q ss_pred --------------------------------hccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 046638 72 --------------------------------IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119 (306)
Q Consensus 72 --------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 119 (306)
+...|++++|.+.+++.++..+. +...+..+..+|.+.|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33456667777777776665533 455666666777777777777777
Q ss_pred HHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHH---------HHHHHHHHHHccCChHHHHHHHH
Q 046638 120 FSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT---------TFLVVLSACCHAGFIDKGLQYFY 187 (306)
Q Consensus 120 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~l~~~~~~~~~~~~a~~~~~ 187 (306)
++++.+ | +...+..+...+...+++++|+..++.+......++.. .+......+...|+.++|.++++
T Consensus 518 l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 776643 2 33334344444455566666666655543221111110 11123334455555555555554
Q ss_pred HHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 046638 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265 (306)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 265 (306)
. .|+++..+..+...+.+.|++++|+..|++.... .++..+..++..+...|++++|.+.++++.+..|++
T Consensus 598 ~-------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 598 Q-------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred h-------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 1 1335555666666666777777777777666542 334556666666666777777777777666666666
Q ss_pred hHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 266 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
+.++..++.++...|++++|.++++++...
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 666666666666677777777777666543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=8.3e-17 Score=143.69 Aligned_cols=290 Identities=9% Similarity=-0.011 Sum_probs=195.5
Q ss_pred chhhhhhcCChHHHHhhhhhc---cCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch
Q 046638 2 QILTYSRCDSSLDFQNVYSSV---RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (306)
+...+.+.|++++|.+.|++. .+.+...+..++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.
T Consensus 55 lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~ 132 (765)
T PRK10049 55 VAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRH 132 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCH
Confidence 345678889999999999884 34456677788888889999999999999988763 23344 77777788888999
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHh------------------------------------
Q 046638 79 KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSS------------------------------------ 122 (306)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------------------------------------ 122 (306)
++|...++++.+..+. +...+..++.++...|+.+.|++.++.
T Consensus 133 ~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ 211 (765)
T PRK10049 133 WDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAI 211 (765)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHH
Confidence 9999999998887654 555555666666666666655544442
Q ss_pred ----------cCc-----CCch-hH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHccCChHH
Q 046638 123 ----------MDE-----RDLV-SW----NSLLLGCAHHGYSREAVQLFEQMQKTEIK-PDGTTFLVVLSACCHAGFIDK 181 (306)
Q Consensus 123 ----------~~~-----~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~ 181 (306)
+.+ |+.. .+ ...+..+...|++++|+..|+++.+.+.. |+.. ...+..++...|++++
T Consensus 212 ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~ 290 (765)
T PRK10049 212 ADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEK 290 (765)
T ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHH
Confidence 221 1110 00 00122345667888888888888776532 3322 2224667888888888
Q ss_pred HHHHHHHHHhcCCCCC-CcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-C-------------Ch---hhHHHHHHHHH
Q 046638 182 GLQYFYLMRNDASLEP-PRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-P-------------GP---SVYKALLSACQ 243 (306)
Q Consensus 182 a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------------~~---~~~~~l~~~~~ 243 (306)
|+..|+++.......+ ........+..++...|++++|.++++++... | +. ..+..+...+.
T Consensus 291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 8888888765432211 01344556666777888888888888877653 2 11 12344555677
Q ss_pred hcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
..|+.++|++.++++....|+++..+..++..+...|++++|++.+++....
T Consensus 371 ~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 371 YSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 7788888888888887777877777777788787788888888777776653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=5.3e-16 Score=138.56 Aligned_cols=291 Identities=10% Similarity=-0.019 Sum_probs=216.4
Q ss_pred chhhhhhcCChHHHHhhhhhccC---cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHhccccc
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRT---RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY-FTITSIVGAIGVISG 77 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 77 (306)
++..+...|++++|+..+++... .+.. +..+..++...|+.++|+..++++.+.. |+. ..+..+..++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCC
Confidence 45677889999999999998642 3556 8888889999999999999999998864 443 344444545544444
Q ss_pred hh----------------------------------------------hHHHHHHHHHHc-CCCccHH-H----HHHHHH
Q 046638 78 FK----------------------------------------------EGKQMHALIFKI-GYDSNVF-V----QNRLVF 105 (306)
Q Consensus 78 ~~----------------------------------------------~a~~~~~~~~~~-~~~~~~~-~----~~~l~~ 105 (306)
.+ +|+..++.+.+. ...|+.. . ....+.
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 44 344444455533 1122211 1 111123
Q ss_pred HHHhcCChHHHHHHHHhcCcCC---ch-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHHccCC
Q 046638 106 MYAICGAINDANKVFSSMDERD---LV-SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP---DGTTFLVVLSACCHAGF 178 (306)
Q Consensus 106 ~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~ 178 (306)
.+...|++++|+..|+++.+.+ .. .-..+...|...|++++|+..|+++.+..... .......+..++...|+
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 4457799999999999998632 11 22335778999999999999999987654321 12445667778899999
Q ss_pred hHHHHHHHHHHHhcCC---------CCCCc---HhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHh
Q 046638 179 IDKGLQYFYLMRNDAS---------LEPPR---AEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQV 244 (306)
Q Consensus 179 ~~~a~~~~~~~~~~~~---------~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~ 244 (306)
+++|.++++.+..... ...|+ ...+..++..+...|++++|+++++++... .+...+..+...+..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 9999999999886531 01123 235667888999999999999999998763 445678888888999
Q ss_pred cCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 245 HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
.|++++|++.+++++...|+++..+..++..+.+.|++++|+.+++++.+.
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999764
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=2.4e-16 Score=141.68 Aligned_cols=261 Identities=11% Similarity=0.063 Sum_probs=206.7
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHH
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (306)
+...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|...++++... +|+...+..++.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 56677888877776 7888899988887764 366555444455556889999999999987665 344455667788
Q ss_pred HHHhcCChHHHHHHHHhcCcCCchhHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHH
Q 046638 106 MYAICGAINDANKVFSSMDERDLVSWNSL---LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182 (306)
Q Consensus 106 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 182 (306)
.+.+.|++++|...+++..+.+....+.. .....+.|++++|...+++..+.. |+...+..+..++.+.|++++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998876433333333 333445599999999999998764 4567788888999999999999
Q ss_pred HHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-P-GPSVYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
...+++..... |.+...+..+...+...|++++|+..+++.... | ++..+..+..++...|++++|+..++++++
T Consensus 629 ~~~l~~AL~l~---Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 629 VSDLRAALELE---PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999988754 568888899999999999999999999988763 4 456788888899999999999999999999
Q ss_pred cCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 261 LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 261 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
..|++..+....+....+..+++.|.+-+++....+
T Consensus 706 l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 706 DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999988888888999999888999888887665443
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=1.2e-15 Score=137.17 Aligned_cols=282 Identities=11% Similarity=0.020 Sum_probs=218.0
Q ss_pred hhhcCChHHHHhhhhhccC--c----chHHHHHHHHHHHhcCC---hHHHHHH----------------------HHHHH
Q 046638 6 YSRCDSSLDFQNVYSSVRT--R----NQISWNAIIAGFCNLGS---GEQALKC----------------------FSEMR 54 (306)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~---~~~a~~~----------------------~~~~~ 54 (306)
..+.|+.++|.++|++... + +...-+-++..|.+++. ..+++.+ ++...
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 4678999999999998644 2 23344467777777766 3333333 22221
Q ss_pred Hc-CC-CC--ChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CCc
Q 046638 55 QA-GI-DI--DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDL 128 (306)
Q Consensus 55 ~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~ 128 (306)
.. +. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++.. |+.
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~ 542 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN 542 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc
Confidence 11 11 23 45667777777765 78889999888888764 4554444556666789999999999998764 455
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHH
Q 046638 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208 (306)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (306)
..+..+...+.+.|++++|...+++..+..+. +...+..+.......|++++|...+++..+.. | +...+..+..
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---P-~~~a~~~LA~ 617 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA---P-SANAYVARAT 617 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---C-CHHHHHHHHH
Confidence 56777888899999999999999999876532 33333344445556799999999999998654 3 6888999999
Q ss_pred HHhccCChHHHHHHHHHhcCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHH
Q 046638 209 LLGRAGFLNEAESFINSMSRN-P-GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAG 286 (306)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 286 (306)
++.+.|++++|+..+++.... | +...+..+...+...|++++|+..++++++..|+++..+..++.++...|++++|+
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999873 4 45667888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 046638 287 DIRTLMYNR 295 (306)
Q Consensus 287 ~~~~~m~~~ 295 (306)
..+++..+.
T Consensus 698 ~~l~~Al~l 706 (987)
T PRK09782 698 HYARLVIDD 706 (987)
T ss_pred HHHHHHHhc
Confidence 999998764
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=1.2e-15 Score=126.32 Aligned_cols=275 Identities=9% Similarity=0.014 Sum_probs=210.7
Q ss_pred cCChHHHHhhhhhccCc--chHHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH--HHHHHhccccchhhHHH
Q 046638 9 CDSSLDFQNVYSSVRTR--NQISWNAI-IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT--SIVGAIGVISGFKEGKQ 83 (306)
Q Consensus 9 ~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 83 (306)
.|+++.|++.+...+.. ++..+..+ ..+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 59999999988876553 23333333 45558999999999999999874 46654433 33567788999999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCc-----------hhHHHHHHHHHhcCCHHHHHHHHH
Q 046638 84 MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL-----------VSWNSLLLGCAHHGYSREAVQLFE 152 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~ 152 (306)
.++++.+..+. +..+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999998754 678889999999999999999999999885221 133334444444555666666666
Q ss_pred HHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC
Q 046638 153 QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG 231 (306)
Q Consensus 153 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~ 231 (306)
.+... .+.+......+...+...|+.++|.+.+++..+. ++++... ++.+....++.+++.+..++..++ |+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR----QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 65432 2346677788899999999999999999888763 2355322 344444669999999999988774 55
Q ss_pred h-hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 232 P-SVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 232 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
. ..+..+...+.+.+++++|.+.|+++++..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 457788889999999999999999999999965 6788999999999999999999987654
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=5.3e-17 Score=133.57 Aligned_cols=275 Identities=11% Similarity=0.002 Sum_probs=220.8
Q ss_pred hHHHHhhhhhccC--cc-hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHhccccchhhHHHHH-
Q 046638 12 SLDFQNVYSSVRT--RN-QISWNAIIAGFCNLGSGEQALKCFSEMRQAGI--DIDYFTITSIVGAIGVISGFKEGKQMH- 85 (306)
Q Consensus 12 ~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~- 85 (306)
.++|...|..++. +| ......+.++|...+++++|.++|+.+.+... .-+..+|.+.+--+-+. -++.++
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHH
Confidence 4678888888654 23 34556678899999999999999999987531 23567787777544221 122233
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc
Q 046638 86 ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER---DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162 (306)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 162 (306)
+.+.+.. +-.+.+|.+++.+|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+...+. +
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-h 488 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-H 488 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-h
Confidence 3344444 347899999999999999999999999999863 5678888888899999999999999998654333 3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHH
Q 046638 163 GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLS 240 (306)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~ 240 (306)
-..|..+...|.++++++.|+-.|+++.+-+ |.+......++..+.+.|+.++|++++++... ..++..--..+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN---P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN---PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC---ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 4567788889999999999999999998644 66888888899999999999999999999875 345555555677
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
.+...+++++|+..++++.+..|++...|..++..|.+.|+.+.|+.-|--+.+.
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 7889999999999999999999999999999999999999999999988766653
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=1.8e-18 Score=136.99 Aligned_cols=251 Identities=13% Similarity=0.148 Sum_probs=111.3
Q ss_pred chhhhhhcCChHHHHhhhhhc-----cCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc
Q 046638 2 QILTYSRCDSSLDFQNVYSSV-----RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (306)
+...+.+.|++++|.++++.. +..|...|..+.......++++.|++.++++...+. -++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccc
Confidence 356788999999999999642 233666677777788889999999999999988753 256667777776 7899
Q ss_pred chhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc-----CCchhHHHHHHHHHhcCCHHHHHHHH
Q 046638 77 GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-----RDLVSWNSLLLGCAHHGYSREAVQLF 151 (306)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~ 151 (306)
++++|.++++...+.. ++...+..++..+.+.++++++.++++.+.+ ++...|..+...+.+.|++++|+..+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998877654 4666778888999999999999999998652 46678889999999999999999999
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CC
Q 046638 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NP 230 (306)
Q Consensus 152 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~ 230 (306)
++..+..+. |......++..+...|+.+++.+++....+.. |.++..+..+..+|...|+.++|...|++... .|
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA---PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 999987544 56678889999999999999999998887765 34777889999999999999999999999876 34
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 231 -GPSVYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 231 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
|+.....+..++...|+.++|.++.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 677788899999999999999999988765
No 27
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=9.3e-15 Score=121.67 Aligned_cols=280 Identities=9% Similarity=-0.007 Sum_probs=202.1
Q ss_pred hhcCChHHHHhhhhhccC--cch-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHhccccchhhH
Q 046638 7 SRCDSSLDFQNVYSSVRT--RNQ-ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF--TITSIVGAIGVISGFKEG 81 (306)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a 81 (306)
...|+++.|++.+....+ |+. ..+-....+..+.|+++.|.+.+.+..+.. |+.. ........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 457999999999988654 333 233444577888899999999999987753 5543 334457778889999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcC---CchhHH----HHHHHHHhcCCHHHHHHHHHHH
Q 046638 82 KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER---DLVSWN----SLLLGCAHHGYSREAVQLFEQM 154 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~a~~~~~~m 154 (306)
...++.+.+..+. +..+...+...+...|++++|.+.+..+.+. +...+. .........+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999998754 6778889999999999999999999988853 222231 1111223333444444566665
Q ss_pred HhcCCC---ccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhH--HHHHHHHHhccCChHHHHHHHHHhcCC
Q 046638 155 QKTEIK---PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEH--YTAIVGLLGRAGFLNEAESFINSMSRN 229 (306)
Q Consensus 155 ~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (306)
....+. .+...+..+...+...|+.++|.+.+++..+... ++... .....-.....++.+.+.+.+++..+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p---d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG---DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC---CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 544321 2667788888999999999999999999887552 23221 111222223457788888888887763
Q ss_pred -CCh---hhHHHHHHHHHhcCCHHHHHHHHH--HHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 230 -PGP---SVYKALLSACQVHGNREIAVRSAK--RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 230 -~~~---~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
|+. ....++...+.+.|++++|.+.|+ ...+..|++ ..+..++..+.+.|+.++|.+++++-.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444 455688889999999999999999 566788854 557799999999999999999998753
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=4.7e-15 Score=122.79 Aligned_cols=251 Identities=10% Similarity=0.013 Sum_probs=192.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhH-HHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHH
Q 046638 39 NLGSGEQALKCFSEMRQAGIDIDYFTI-TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117 (306)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 117 (306)
..|++++|++.+....+.. +++..+ .....+..+.|+++.|.+++.++.+....+...........+...|+++.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 3699999998888765542 223333 3334455789999999999999998644333333334477899999999999
Q ss_pred HHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH-------HHHHHHHHHHHccCChHHHHHHHH
Q 046638 118 KVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG-------TTFLVVLSACCHAGFIDKGLQYFY 187 (306)
Q Consensus 118 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 187 (306)
..++++.+ | +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999875 3 5567888999999999999999999999987765333 123333444444555666677777
Q ss_pred HHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch
Q 046638 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDP 266 (306)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 266 (306)
.+-+.. |.++.....++..+...|+.++|.+++++..+. +++. ..++.+....++.+++.+..++..+..|+++
T Consensus 254 ~lp~~~---~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 254 NQSRKT---RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred hCCHHH---hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 664433 458888999999999999999999999988875 4442 2234444566999999999999999999999
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 267 AIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 267 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
..+..++..+.+.|+|++|.+.|+...+..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999998753
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=8.2e-15 Score=124.64 Aligned_cols=283 Identities=14% Similarity=0.113 Sum_probs=208.4
Q ss_pred hcCChHHHHhhhhhccC---cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHH
Q 046638 8 RCDSSLDFQNVYSSVRT---RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQM 84 (306)
Q Consensus 8 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (306)
-.|++++|.+++.++.. .+...|.+|...|-+.|+.+++...+-..-... +-|..-|..+.....+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 34999999999999754 477889999999999999999998876554432 34667888888888899999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCc------------------------------------
Q 046638 85 HALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL------------------------------------ 128 (306)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------------------------------ 128 (306)
|.++++..+ ++....-.-...|-+.|+...|...|.++.+.+.
T Consensus 230 y~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999874 4666666677888899999999888888764111
Q ss_pred --------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------------------------CCccHHHHHHHHHHH
Q 046638 129 --------VSWNSLLLGCAHHGYSREAVQLFEQMQKTE---------------------------IKPDGTTFLVVLSAC 173 (306)
Q Consensus 129 --------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------------------------~~p~~~~~~~l~~~~ 173 (306)
..++.++..+.+...++.|......+.... ..++...+ -++-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhh
Confidence 123444444445555555555444443310 11111111 111223
Q ss_pred HccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHH
Q 046638 174 CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN---PGPSVYKALLSACQVHGNREI 250 (306)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 250 (306)
.+.+..+....+.....+.......++..|.-+..+|...|++.+|+.+|..+... .+...|..+...|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 33333333333333343333222336778899999999999999999999999875 456679999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 251 AVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 251 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
|...|+.++...|++...-..|...+.+.|+.++|.+.+..+.
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999998876
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.74 E-value=5.6e-15 Score=122.97 Aligned_cols=270 Identities=10% Similarity=-0.013 Sum_probs=196.3
Q ss_pred HHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCChhh-HHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHH
Q 046638 30 WNAIIAGF--CNLGSGEQALKCFSEMRQAGIDIDYFT-ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFM 106 (306)
Q Consensus 30 ~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (306)
+..+..+. ...|+++.|.+.+.+..+. .|+... +-....+..+.|+++.|.+++.+..+..+.+.....-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 34444443 4579999999999888775 355443 344456778889999999999999876544444455556888
Q ss_pred HHhcCChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH---HccCChH
Q 046638 107 YAICGAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC---CHAGFID 180 (306)
Q Consensus 107 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~---~~~~~~~ 180 (306)
+...|+++.|...++.+.+ | +......+...+.+.|++++|.+.+..+.+.++.++......-..++ ...+..+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999885 4 55678899999999999999999999999887653332211111222 2233333
Q ss_pred HHHHHHHHHHhcCC-CCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CChhhH---HHHHHHHHhcCCHHHHHHHH
Q 046638 181 KGLQYFYLMRNDAS-LEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PGPSVY---KALLSACQVHGNREIAVRSA 255 (306)
Q Consensus 181 ~a~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~---~~l~~~~~~~~~~~~a~~~~ 255 (306)
.+...+..+.+... ..+.++..+..++..+...|+.++|.+++++..++ |+.... ..........++.+.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 33344444443221 11237888999999999999999999999999874 665521 22222234568889999999
Q ss_pred HHHhhcCCCch--HHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCC
Q 046638 256 KRVLDLWPNDP--AIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301 (306)
Q Consensus 256 ~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 301 (306)
++.++..|+++ .....++..+.+.|++++|.++|+........|++
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 99999999999 88899999999999999999999954443344443
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=6.6e-14 Score=123.77 Aligned_cols=160 Identities=13% Similarity=0.053 Sum_probs=124.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC---CCCcHhHHHHHHHHHh
Q 046638 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL---EPPRAEHYTAIVGLLG 211 (306)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~ 211 (306)
+.++...|++.++++.|+.+...+.+....+-..+..+|...+++++|..+|..+....+. .+++......|.-+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 3456667888899999999988776544557778889999999999999999988654321 1234444578888999
Q ss_pred ccCChHHHHHHHHHhcCC-C-------------Chh---hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 046638 212 RAGFLNEAESFINSMSRN-P-------------GPS---VYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSN 274 (306)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~-~-------------~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 274 (306)
..+++++|..+++++... | ++. .+..++..+.-.|+..+|++.++++....|.|+.....++.
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~ 458 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALAS 458 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999988762 2 111 23345666788999999999999999999999999999999
Q ss_pred HHhhcCChhhHHHHHHHHhh
Q 046638 275 VSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~ 294 (306)
.+...|...+|+..++....
T Consensus 459 v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHHhcCCHHHHHHHHHHHhh
Confidence 99999999999999966554
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=1.4e-13 Score=121.74 Aligned_cols=287 Identities=10% Similarity=-0.008 Sum_probs=204.8
Q ss_pred hhhhcCChHHHHhhhhhccC--cch-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhH
Q 046638 5 TYSRCDSSLDFQNVYSSVRT--RNQ-ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG 81 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (306)
...+.|+++.|++.|++... |+. .....++..+...|+.++|+..+++.... ..........+...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 46789999999999999864 332 12338888888999999999999999821 111222333335577888999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046638 82 KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 159 (306)
+++|+++.+..+. +...+..++..|...++.++|++.++++.. |+...+..++..+...++..+|++.++++.+..+
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 9999999998765 577777889999999999999999999986 4444444444444446666669999999988754
Q ss_pred CccHHHHHHHHHHHHccCChHH------------------------------------------------HHHHHHHHHh
Q 046638 160 KPDGTTFLVVLSACCHAGFIDK------------------------------------------------GLQYFYLMRN 191 (306)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~~~------------------------------------------------a~~~~~~~~~ 191 (306)
. +...+..+..++.+.|-... |+.-++.+..
T Consensus 201 ~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 201 T-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred C-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 3 44445555555544443322 3333333333
Q ss_pred cCCCCCCcHhHH----HHHHHHHhccCChHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC--
Q 046638 192 DASLEPPRAEHY----TAIVGLLGRAGFLNEAESFINSMSRNP---GPSVYKALLSACQVHGNREIAVRSAKRVLDLW-- 262 (306)
Q Consensus 192 ~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 262 (306)
.....|+....| .-.+-++...|++.++++.|+.+...+ ...+-..+.++|...+++++|..+|+++....
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 222223222222 233456778899999999999998642 23345678889999999999999999998744
Q ss_pred ----CCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 263 ----PNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 263 ----p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
|.+......|..++...+++++|..+++.+.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 22344457889999999999999999999986
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.8e-15 Score=123.63 Aligned_cols=253 Identities=14% Similarity=0.069 Sum_probs=209.2
Q ss_pred hhhhhhcCChHHHHhhhhhccC------cchHHHHHHHHHHHhcCChHHHHHHH-HHHHHcCCCCChhhHHHHHHHhccc
Q 046638 3 ILTYSRCDSSLDFQNVYSSVRT------RNQISWNAIIAGFCNLGSGEQALKCF-SEMRQAGIDIDYFTITSIVGAIGVI 75 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 75 (306)
-.+|-..+++++|+++|+.+.. .+...|.+.+-.+-+ +-++.++ +.+.+.+ +-.+.+|-.+.++|.-+
T Consensus 360 GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQ 434 (638)
T KOG1126|consen 360 GRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDTD-PNSPESWCALGNCFSLQ 434 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhh
Confidence 3578888999999999999754 467788887764422 2333333 3344432 45678999999999999
Q ss_pred cchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHH---HHHHHHhcCCHHHHHHHHH
Q 046638 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS---LLLGCAHHGYSREAVQLFE 152 (306)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~ 152 (306)
++.+.|++.|++.++.++. ...+|+.+..-+.....+|.|...|+.....|...|++ +...|.+.++++.|+-.|+
T Consensus 435 kdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred hHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 9999999999999987633 78899999999999999999999999999887776665 6678999999999999999
Q ss_pred HHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC
Q 046638 153 QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG 231 (306)
Q Consensus 153 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~ 231 (306)
+..+.++. +.+....+...+.+.|+.|+|+++++++.... |.++..-...+..+...+++++|+..++++++- |+
T Consensus 514 kA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld---~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 514 KAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD---PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred hhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC---CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence 99887655 66667778888999999999999999987544 557777778888999999999999999999873 55
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 046638 232 -PSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265 (306)
Q Consensus 232 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 265 (306)
...+..++..|.+.|+.+.|..-|.-+.+++|.-
T Consensus 590 es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 590 ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 4568888899999999999999999999999963
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5e-14 Score=111.75 Aligned_cols=255 Identities=12% Similarity=0.068 Sum_probs=186.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCC--ccHHHHHHHHHHHHhcCCh
Q 046638 36 GFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYD--SNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 113 (306)
++....+.+++..-.+.+...|++-+...-+....+.....++++|+.+|+++.+.++- -|..+|..++-+-....++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 34444556666666666666665333333333333445667777777777777776431 2455665555322221111
Q ss_pred HHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 046638 114 NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193 (306)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (306)
.---...-.+.+=.+.|...+.+.|.-.++.++|...|++..+.++. ....|+.+..-|....+...|.+.+++..+-.
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 11111111122223456667778888889999999999999887654 56778999999999999999999999998644
Q ss_pred CCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHH
Q 046638 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVL 271 (306)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 271 (306)
|.|-..|-.|+++|.-.+.+.=|+-.|++... + .|+..|.+|...|.+.++.++|++.|.+++...-.+...+..
T Consensus 395 ---p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 395 ---PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred ---chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 66999999999999999999999999999876 3 567889999999999999999999999999976666789999
Q ss_pred HHHHHhhcCChhhHHHHHHHHhh
Q 046638 272 LSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 272 l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
|+..|.+.++.++|..+|++-.+
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999998877654
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.8e-13 Score=103.85 Aligned_cols=286 Identities=11% Similarity=0.079 Sum_probs=181.1
Q ss_pred cCChHHHHhhhhhccCcchHHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh------hhHHHHHHHhccccchh
Q 046638 9 CDSSLDFQNVYSSVRTRNQISW---NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY------FTITSIVGAIGVISGFK 79 (306)
Q Consensus 9 ~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~ 79 (306)
.++.++|.+.|-.|.+.|+.++ -+|.+.|.+.|..+.|+.+-+.+.++ ||. .....|..-|...|-++
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4567777777777755444443 45667777777777777777777654 332 22334455566677777
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCch--------hHHHHHHHHHhcCCHHHHHHHH
Q 046638 80 EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV--------SWNSLLLGCAHHGYSREAVQLF 151 (306)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~ 151 (306)
.|..+|..+.+.+ .--..+...|+..|-...+|++|+++-+++.+.+.. .|.-|...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 7777777777654 224556667777777777777777777766543222 2344445555567777777777
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-C
Q 046638 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-P 230 (306)
Q Consensus 152 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 230 (306)
.+..+.+.+ ....-..+.+.....|+++.|.+.++.+.+.+.. --+.+...|..+|...|+.++...++.++... +
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~--yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPE--YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 777766443 2233345666777778888888888777765532 13455667777788888888887777776653 5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhh---cCChhhHHHHHHHHhhcCCCCCCC
Q 046638 231 GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA---TDCWDDAGDIRTLMYNRGIRKKPG 302 (306)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 302 (306)
++..-..+...-....-.+.|...+.+-+...|+ ...+..|+..... -|.+.+....++.|....++.+|.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 5555555555444455566677777777777774 4455555554432 345677777788887666655554
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.68 E-value=5.6e-14 Score=108.36 Aligned_cols=198 Identities=16% Similarity=0.152 Sum_probs=156.9
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 046638 95 SNVFVQNRLVFMYAICGAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171 (306)
Q Consensus 95 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 171 (306)
.....+..+...+...|++++|...+++..+ | +...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 3456677778888888888888888887764 2 3556777888888889999999988888776543 4556777788
Q ss_pred HHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-C-ChhhHHHHHHHHHhcCCHH
Q 046638 172 ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-P-GPSVYKALLSACQVHGNRE 249 (306)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~ 249 (306)
.+...|++++|.+.+++....... +.....+..+...+...|++++|...+++.... | +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLY-PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 888899999999999888764322 224566777888899999999999999888763 3 3556778888899999999
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 250 IAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 250 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
+|...++++.+..|+++..+..++..+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999988887888888889999999999999998887754
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=9.1e-14 Score=110.38 Aligned_cols=271 Identities=11% Similarity=0.090 Sum_probs=209.7
Q ss_pred hhhhcCChHHHHhhhhhccCcchHHH----HHHHH-HHHh-cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch
Q 046638 5 TYSRCDSSLDFQNVYSSVRTRNQISW----NAIIA-GFCN-LGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~li~-~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (306)
-|.+.|+++.|++++.-+...|..+- |.|.. .|.+ ..++..|.++-+..+..+ .-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 47789999999999988866543332 22222 2333 346778887777665532 12333333333344567899
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046638 79 KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155 (306)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 155 (306)
++|...|++.+..+.......|| +...+-..|++++|+..|-++.. .++.+.-.+.+.|-...+..+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 99999999999876554444444 45567888999999999988763 677888889999999999999999998775
Q ss_pred hcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCChhh
Q 046638 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPGPSV 234 (306)
Q Consensus 156 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~ 234 (306)
.. ++.|......|...|-+.|+-..|.+++-.-- ...|-+..+..-|...|....-+++++..|++..- .|+..-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 43 44577888999999999999999988865433 23356899999999999999999999999998754 699999
Q ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCC
Q 046638 235 YKALLSAC-QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDC 281 (306)
Q Consensus 235 ~~~l~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 281 (306)
|..++..| .+.|++++|.++|++..+..|.+......|++.+...|.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99998885 568999999999999999999999999999999988874
No 38
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.8e-13 Score=107.82 Aligned_cols=241 Identities=20% Similarity=0.276 Sum_probs=163.3
Q ss_pred hhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccH
Q 046638 18 VYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNV 97 (306)
Q Consensus 18 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 97 (306)
++-+..+.+..+|..+|.++++-...+.|.+++++-.+...+.+..+||.+|.+-.- ....+++.+|....+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCch
Confidence 344444557778888998888888888898888888777778888888888876432 2337788888888888899
Q ss_pred HHHHHHHHHHHhcCChHHHHHH----HHhcC----cCCchhHHHHHHHHHhcCCHHH-HHHHHHHHHh----cCCC---c
Q 046638 98 FVQNRLVFMYAICGAINDANKV----FSSMD----ERDLVSWNSLLLGCAHHGYSRE-AVQLFEQMQK----TEIK---P 161 (306)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~a~~~----~~~~~----~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~----~~~~---p 161 (306)
.|+|+++.+..+.|+++.|.+. +.+|+ +|...+|..+|..+++.++..+ |..++.++.. ..++ |
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 9999999988888888776544 34444 3777777777777777777643 3444444432 1122 2
Q ss_pred -cHHHHHHHHHHHHccCChHHHHHHHHHHHhcC--CCCCCc---HhHHHHHHHHHhccCChHHHHHHHHHhcCC---CCh
Q 046638 162 -DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA--SLEPPR---AEHYTAIVGLLGRAGFLNEAESFINSMSRN---PGP 232 (306)
Q Consensus 162 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 232 (306)
+...|...+..|.+..+.+-|.++..-+.... .+.+|+ ...|..+..+.++....+.-...|+.|.-+ |+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 33456667777777777777777766555322 122222 223455666667777777777777777654 666
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 046638 233 SVYKALLSACQVHGNREIAVRSAKRVLDLW 262 (306)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 262 (306)
.+...++++....|.++-..+++..++..+
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 677777777777777777777777666533
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.9e-13 Score=107.45 Aligned_cols=280 Identities=13% Similarity=0.034 Sum_probs=208.2
Q ss_pred hhhhcCChHHHHhhhhhccC---c-chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CChhhHHHHHHHhccccch
Q 046638 5 TYSRCDSSLDFQNVYSSVRT---R-NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID--IDYFTITSIVGAIGVISGF 78 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 78 (306)
+|......+++.+-.+.... | +...-+....+.-...++++|+.+|+++.+.++- -|..+|..++-+-...
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~--- 312 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK--- 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh---
Confidence 34444455555544444322 2 2333333444566788999999999999987521 2557777666432221
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046638 79 KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155 (306)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 155 (306)
..+.++.+-.-.--+-.+.|+..+.+.|+-.++.++|..+|++..+ .....|+.+..-|...++...|.+-|++..
T Consensus 313 -skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 313 -SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred -HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 1222332222111133567888899999999999999999999886 345689999999999999999999999998
Q ss_pred hcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChh
Q 046638 156 KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPS 233 (306)
Q Consensus 156 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~ 233 (306)
+..+. |-..|..+..+|.-.+.+.-|+-+|++...- .|.|...|.+|+++|.+.++.++|+..|.+...- .+..
T Consensus 392 di~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~---kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 392 DINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL---KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred hcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 87654 8889999999999999999999999998753 3679999999999999999999999999998764 3447
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh-------cCCCchHHHHHHHHHHhhcCChhhHHHHHHHH
Q 046638 234 VYKALLSACQVHGNREIAVRSAKRVLD-------LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLM 292 (306)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 292 (306)
.+..+...|-+.++.++|...|++.++ ..|....+...|+.-+.+.+++++|..+....
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 788999999999999999999999887 34434445556778888888888887755444
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.9e-13 Score=109.22 Aligned_cols=162 Identities=15% Similarity=0.107 Sum_probs=129.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHH
Q 046638 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAI 206 (306)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 206 (306)
+..+|..-.+.+.-.+++++|..-|++.+...+. +...|..+..+..+.++++++...|++.++.. |..+.+|+..
T Consensus 393 n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF---P~~~Evy~~f 468 (606)
T KOG0547|consen 393 NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF---PNCPEVYNLF 468 (606)
T ss_pred CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCchHHHHH
Confidence 4556666666667777888888888888766443 55667777777788999999999999999866 4578899999
Q ss_pred HHHHhccCChHHHHHHHHHhcC-CCC-------hhh--HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 046638 207 VGLLGRAGFLNEAESFINSMSR-NPG-------PSV--YKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276 (306)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~-~~~-------~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 276 (306)
...+...+++++|.+.|+.... .|. +.. ...++. +.-.+++..|..+++++++++|.....|..|+..-
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~ 547 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFE 547 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 9999999999999999998875 222 111 112221 22458999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHh
Q 046638 277 KATDCWDDAGDIRTLMY 293 (306)
Q Consensus 277 ~~~g~~~~a~~~~~~m~ 293 (306)
.+.|+.++|+++|++-.
T Consensus 548 lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 548 LQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 99999999999998754
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.4e-13 Score=109.54 Aligned_cols=262 Identities=11% Similarity=-0.001 Sum_probs=215.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHH
Q 046638 27 QISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFM 106 (306)
Q Consensus 27 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (306)
+...-.-..-+...+++.+..++++...+.. ++....+..-|.++...|+..+-.-+=.++.+.-+ -.+.+|-+++..
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHHHH
Confidence 3344444566788999999999999998874 46677777777788899998888888888888754 367899999999
Q ss_pred HHhcCChHHHHHHHHhcCcC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHH
Q 046638 107 YAICGAINDANKVFSSMDER---DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183 (306)
Q Consensus 107 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 183 (306)
|.-.|+.++|.+.|.+...- -...|-.+...|+-.|..|+|+..|...-+.=.. ...-+.-+.--|.+.++.+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHH
Confidence 99999999999999988753 3468999999999999999999999887553111 1112334556788899999999
Q ss_pred HHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--------C-ChhhHHHHHHHHHhcCCHHHHHHH
Q 046638 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--------P-GPSVYKALLSACQVHGNREIAVRS 254 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~-~~~~~~~l~~~~~~~~~~~~a~~~ 254 (306)
++|.+... +.|.++.+.+-+.-.....+.+.+|..+|+..... + ...+++.|.++|.+.+.+++|+..
T Consensus 401 ~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 401 KFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99998875 33668888888888888899999999999887631 2 345688999999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 255 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
+++++...|.++.++..++-+|...|+++.|++.|.+..-
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987653
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.64 E-value=5.8e-13 Score=115.08 Aligned_cols=260 Identities=14% Similarity=0.012 Sum_probs=183.7
Q ss_pred cchHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHhc---------cccchhhHHHHHHHHH
Q 046638 25 RNQISWNAIIAGFCN-----LGSGEQALKCFSEMRQAGIDIDY-FTITSIVGAIG---------VISGFKEGKQMHALIF 89 (306)
Q Consensus 25 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 89 (306)
.+...|...+.+-.. .+.+++|+..|++..+.. |+. ..|..+..++. ..+++++|...+++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 345556666655322 234679999999998853 544 44554444433 2345789999999999
Q ss_pred HcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHH
Q 046638 90 KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF 166 (306)
Q Consensus 90 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 166 (306)
+.++. +..++..+..++...|++++|...|++..+ | +...+..+...+...|++++|...+++..+..+.+. ..+
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-~~~ 409 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-AAG 409 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-hhH
Confidence 98754 778888899999999999999999999875 4 356788889999999999999999999988765422 223
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CChhh-HHHHHHHHHh
Q 046638 167 LVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PGPSV-YKALLSACQV 244 (306)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~l~~~~~~ 244 (306)
..++..+...|++++|...++++.+... |.++..+..+..++...|++++|...++++... |+... .+.+...|..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~--p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHL--QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhcc--ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 3344456678999999999988875432 335566788889999999999999999987654 44333 4445555677
Q ss_pred cCCHHHHHHHHHHHhh---cCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 245 HGNREIAVRSAKRVLD---LWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 245 ~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
.| ++|...++.+.+ ..|.++.. +...+.-.|+-+.+... +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 478887777776 34433322 55555556666666555 6666543
No 43
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=7.4e-14 Score=106.25 Aligned_cols=223 Identities=11% Similarity=-0.037 Sum_probs=134.0
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CCchh-HHHHHHHHHhcC
Q 046638 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDLVS-WNSLLLGCAHHG 142 (306)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-~~~l~~~~~~~~ 142 (306)
+.+..+|.+.|.+.+|.+.++..++.. |.+.||-.|-.+|.+..+...|+.+|.+-.+ |..+| ..-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 345555566666666666666655542 3444555556666666666666666665554 32222 233445555566
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHH
Q 046638 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESF 222 (306)
Q Consensus 143 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (306)
+.++|.++|+...+.... +.....++...|.-.++++-|+.+|.++...|. .++..|+.+.-+|.-.++++-++.-
T Consensus 305 ~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~---~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA---QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred hHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC---CChHHHhhHHHHHHhhcchhhhHHH
Confidence 666666666666554322 444555555666666666666666666666554 2556666666666666666666666
Q ss_pred HHHhcCC---CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 223 INSMSRN---PG--PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 223 ~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
|++.... |+ ...|-.+.......|++..|.+.|+-++..+|++...++.|+..-.+.|++++|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 6655431 22 235666666666677777777777777777776667777777777777777777777665543
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=7.5e-13 Score=102.02 Aligned_cols=197 Identities=15% Similarity=0.157 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 046638 28 ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMY 107 (306)
Q Consensus 28 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (306)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..+. +...+..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~- 108 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF- 108 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-
Confidence 344445555555555555555555554432 122334444444444555555555555555444322 33344444444
Q ss_pred HhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHccCChHHHHHHH
Q 046638 108 AICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFLVVLSACCHAGFIDKGLQYF 186 (306)
Q Consensus 108 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (306)
+...|++++|...+++.......| ....+..+..++...|++++|...+
T Consensus 109 ------------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 109 ------------------------------LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ------------------------------HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444455555555554444321111 1223344444555555555555555
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
++..... |.+...+..+...+...|++++|...+++.... .+...+..+...+...|+.++|..+.+.+..
T Consensus 159 ~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 159 TRALQID---PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHhC---cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5554432 223444555555555555555555555554431 2233334444445555555555555554443
No 45
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.62 E-value=3.6e-13 Score=111.80 Aligned_cols=232 Identities=15% Similarity=0.148 Sum_probs=180.0
Q ss_pred hhhHHHHHHHhccccchhhHHHHHHHHHHc-----CC-CccHH-HHHHHHHHHHhcCChHHHHHHHHhcCc-------C-
Q 046638 62 YFTITSIVGAIGVISGFKEGKQMHALIFKI-----GY-DSNVF-VQNRLVFMYAICGAINDANKVFSSMDE-------R- 126 (306)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~- 126 (306)
..+...+...|...|+++.|..+++..++. |. .|... ..+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356677888999999999999999998765 21 23333 445588899999999999999998863 2
Q ss_pred ---CchhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCC-CccHH-HHHHHHHHHHccCChHHHHHHHHHHHhcC---
Q 046638 127 ---DLVSWNSLLLGCAHHGYSREAVQLFEQMQK-----TEI-KPDGT-TFLVVLSACCHAGFIDKGLQYFYLMRNDA--- 193 (306)
Q Consensus 127 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 193 (306)
-..+++.|...|.+.|++++|...+++..+ .|. .|... .++.+...|+..+++++|..++.+..+..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 235788888999999999999988887643 122 23333 45677788899999999999987755422
Q ss_pred --CCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC---------CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhh-
Q 046638 194 --SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN---------PG-PSVYKALLSACQVHGNREIAVRSAKRVLD- 260 (306)
Q Consensus 194 --~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 260 (306)
...+.-..+++.|...|...|++++|.++++++... +. ...++.+...|.+.+++++|..+|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112224578999999999999999999999988652 11 23567788889999999999999998876
Q ss_pred ---c---CCCchHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 261 ---L---WPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 261 ---~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
. .|+...+|..|+..|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 44556789999999999999999999988776
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=1.5e-11 Score=96.24 Aligned_cols=283 Identities=10% Similarity=0.028 Sum_probs=172.2
Q ss_pred cCChHHHHhhhhhccCc---chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHH
Q 046638 9 CDSSLDFQNVYSSVRTR---NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMH 85 (306)
Q Consensus 9 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (306)
.|++.+|++...+-.+. ....|..-..+--+.|+.+.+-.++.+..+....++....-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 46666666666554321 222333344555566677777776666665422334444455555566666777777666
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCC-----------chhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 86 ALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD-----------LVSWNSLLLGCAHHGYSREAVQLFEQM 154 (306)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m 154 (306)
.++.+.++. +..+......+|.+.|++.....++..+.+.. ..+|..++.-....+..+.-...++..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 666666543 45566666667777777777777766666421 124555555444444444444445444
Q ss_pred HhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CCh
Q 046638 155 QKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGP 232 (306)
Q Consensus 155 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~ 232 (306)
-.. .+-+...-.+++.-+.+.|+.++|.++..+..+... |.. ....-.+.+-++.+.-++..++-.+. .++
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~----D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW----DPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc----Chh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 222 222333444556666677777777777766655442 222 11112233455555555555444432 344
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCC
Q 046638 233 SVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300 (306)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 300 (306)
..+.+|...|.+.+.+.+|...|+.+++..|+ ...|..++.++.+.|+..+|.+.+++-...-.+|.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 66788889999999999999999999998884 57999999999999999999999988775544444
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.62 E-value=4.2e-13 Score=115.94 Aligned_cols=227 Identities=11% Similarity=-0.014 Sum_probs=175.0
Q ss_pred ChhhHHHHHHHhc-----cccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---------CChHHHHHHHHhcCc-
Q 046638 61 DYFTITSIVGAIG-----VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC---------GAINDANKVFSSMDE- 125 (306)
Q Consensus 61 ~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~- 125 (306)
+...|...+.+-. ..+++++|...+++.++..+. +...|..+..+|... +++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 3444545544421 234678999999999988654 566777777665532 448899999999875
Q ss_pred -C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHH
Q 046638 126 -R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY 203 (306)
Q Consensus 126 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 203 (306)
| +...+..+...+...|++++|...|++..+.++. +...+..+..++...|++++|...+++..+... .++..+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P---~~~~~~ 409 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDP---TRAAAG 409 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CChhhH
Confidence 3 5667888888999999999999999999887644 456778889999999999999999999987653 344444
Q ss_pred HHHHHHHhccCChHHHHHHHHHhcCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcC
Q 046638 204 TAIVGLLGRAGFLNEAESFINSMSRN--PG-PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATD 280 (306)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 280 (306)
..++..+...|++++|...+++.... |+ +..+..+...+...|+.++|...++++....|.+......+...|...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 44555667789999999999988653 43 4446777788899999999999999988888888778888888888888
Q ss_pred ChhhHHHHHHHHhh
Q 046638 281 CWDDAGDIRTLMYN 294 (306)
Q Consensus 281 ~~~~a~~~~~~m~~ 294 (306)
++|...++.+.+
T Consensus 490 --~~a~~~l~~ll~ 501 (553)
T PRK12370 490 --ERALPTIREFLE 501 (553)
T ss_pred --HHHHHHHHHHHH
Confidence 478887777654
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=2.7e-12 Score=97.61 Aligned_cols=251 Identities=12% Similarity=0.096 Sum_probs=194.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCc---cHHHHHHHHHHHHhcCCh
Q 046638 37 FCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDS---NVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~ 113 (306)
+.-+++.++|.+.|-+|.+.+ +.+..+-.+|.+.|.+.|..++|+++.+-+.++---+ ...+...|..-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 445678999999999999853 2344556678889999999999999999988752111 123455678889999999
Q ss_pred HHHHHHHHhcCcCC---chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH----HHHHHHHHHHHccCChHHHHHHH
Q 046638 114 NDANKVFSSMDERD---LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG----TTFLVVLSACCHAGFIDKGLQYF 186 (306)
Q Consensus 114 ~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~ 186 (306)
|.|+.+|..+.+.. ..+...|+..|-...+|++|++.-+++.+.+..+.. ..|.-+...+....+++.|...+
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999998732 346777899999999999999999999887765543 23445555566678999999999
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 046638 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG--PSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263 (306)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 263 (306)
.+..+.. |.++.+-..+.+.....|+++.|.+.++.+... |+ +.+...|..+|.+.|+.++....+.++.+..+
T Consensus 204 ~kAlqa~---~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 204 KKALQAD---KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHhhC---ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9988755 457777788899999999999999999999874 43 34567788899999999999999999999777
Q ss_pred CchHHHHHHHHHHhhcCChhhHHHHHHHH
Q 046638 264 NDPAIYVLLSNVSKATDCWDDAGDIRTLM 292 (306)
Q Consensus 264 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 292 (306)
. +..-..+........-.+.|..++.+-
T Consensus 281 g-~~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 281 G-ADAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred C-ccHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 5 345566666655555566676665443
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=1.5e-13 Score=104.69 Aligned_cols=230 Identities=12% Similarity=0.003 Sum_probs=198.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 046638 31 NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC 110 (306)
Q Consensus 31 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (306)
+.+.++|.+.|.+.+|.+-|+..++. .|-+.||..|-.+|.+..++..|+.++.+-++.- +-++.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56889999999999999999998885 5788899999999999999999999999988864 33555556678889999
Q ss_pred CChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHH
Q 046638 111 GAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187 (306)
Q Consensus 111 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (306)
++.++|.++|+...+ .++.+.-.+...|.-.++++-|+.+|+++.+.|+. +...|..+.-+|.-.+++|-++..|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999999875 35666777788899999999999999999999987 77889999999999999999999999
Q ss_pred HHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 046638 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 264 (306)
+....-.-......+|..+.......|++.-|.+.|+-...+ .+...++.|.-.-.+.|++++|..++..+....|+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 887643211224567899999999999999999999988764 45678999988889999999999999999999986
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=1.1e-11 Score=96.91 Aligned_cols=258 Identities=15% Similarity=0.108 Sum_probs=206.9
Q ss_pred HHHHHHh--cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 046638 33 IIAGFCN--LGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC 110 (306)
Q Consensus 33 li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (306)
+..+..+ .|+|.+|++...+-.+.+-.| ...|..-..+..+.|+.+.+-+++.++.+...+++....-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 4444433 699999999999988876433 3455666667788999999999999999875567778888888999999
Q ss_pred CChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH-------HHHHHHHHHHHccCChH
Q 046638 111 GAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG-------TTFLVVLSACCHAGFID 180 (306)
Q Consensus 111 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~ 180 (306)
|+.+.|..-..++.+ .+.........+|.+.|++.+...++.+|.+.|.-.++ .+|..++.-....+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 999999998887764 56778899999999999999999999999998875443 45666676666666666
Q ss_pred HHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 046638 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PGPSVYKALLSACQVHGNREIAVRSAKRVL 259 (306)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (306)
.-...|+..-..-. .++..-..++.-+.++|+.++|.++.++..++ -|+. ......+.+-++.+.-++..++-.
T Consensus 247 gL~~~W~~~pr~lr---~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 247 GLKTWWKNQPRKLR---NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred HHHHHHHhccHHhh---cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHH
Confidence 66667776654332 25677888999999999999999999888775 3443 222334678889999999999999
Q ss_pred hcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 260 DLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 260 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
+..|++|..+.+|+..|.+.+.|.+|..+|+...+.+
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999766543
No 51
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.58 E-value=7.2e-12 Score=107.94 Aligned_cols=231 Identities=13% Similarity=0.007 Sum_probs=132.1
Q ss_pred ChhhHHHHHHHhccccchhhHHHHHHHHH----HcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc-------CCc-
Q 046638 61 DYFTITSIVGAIGVISGFKEGKQMHALIF----KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-------RDL- 128 (306)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~- 128 (306)
|...|..+...+. .++...++.+|..+. ..+-.+.+...|.+...+...|++..|...|..... +|.
T Consensus 413 d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 3344444444332 233333344444333 334446677777788888888888888887776652 122
Q ss_pred -----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhH
Q 046638 129 -----VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG-TTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEH 202 (306)
Q Consensus 129 -----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (306)
.+--.+...+-..++.+.|.+.|..+.... |.- ..|.-++......++..+|...+......... ++.+
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~---np~a 566 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS---NPNA 566 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC---CcHH
Confidence 122234455555666777777777766542 222 23333333333446667777777776654432 4555
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhcC----CCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHhhcCCCch
Q 046638 203 YTAIVGLLGRAGFLNEAESFINSMSR----NPGPSVYKALLSACQV------------HGNREIAVRSAKRVLDLWPNDP 266 (306)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~p~~~ 266 (306)
++.+...+.+...+..|.+-|+.+.. .+|+.+.-.|.+.|.+ .+..++|+.+|.++++.+|.+.
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 66666677776666666665444443 2444444444444432 2345677777777777777776
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 046638 267 AIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 267 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 297 (306)
.+-+-++.+++..|++.+|..+|.++++...
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 6666677777777777777777777765443
No 52
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.57 E-value=3.1e-12 Score=101.76 Aligned_cols=227 Identities=10% Similarity=-0.068 Sum_probs=144.1
Q ss_pred cCChHHHHHHHHHHHHcC-CCCC--hhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHH
Q 046638 40 LGSGEQALKCFSEMRQAG-IDID--YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDA 116 (306)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 116 (306)
.++.+.++.-+.+++... ..|+ ...|..+...+...|++++|...|++.++..+. +...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 455677777777777532 1222 244666677778888888888888888887643 677888888888888888888
Q ss_pred HHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 046638 117 NKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193 (306)
Q Consensus 117 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (306)
...|++..+ | +..+|..+..++...|++++|.+.|++..+..+. ..........+...++.++|...+.+.....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~--~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN--DPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888888764 3 3467777888888888888888888888765433 2111222223345677888888886654322
Q ss_pred CCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhc---CC------CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 046638 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS---RN------PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 264 (306)
.+ +...+ . ......|+...+ +.+..+. .. .....|..+...+...|++++|+..|+++++.+|.
T Consensus 196 --~~-~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 196 --DK-EQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred --Cc-cccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 12 22221 2 222334554433 2333332 11 12346777888888888888888888888888864
Q ss_pred c-hHHHHHHHHHH
Q 046638 265 D-PAIYVLLSNVS 276 (306)
Q Consensus 265 ~-~~~~~~l~~~~ 276 (306)
+ +..-..++...
T Consensus 269 ~~~e~~~~~~e~~ 281 (296)
T PRK11189 269 NFVEHRYALLELA 281 (296)
T ss_pred hHHHHHHHHHHHH
Confidence 4 33333344433
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=3.2e-12 Score=101.80 Aligned_cols=255 Identities=12% Similarity=0.102 Sum_probs=190.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH--HHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 046638 36 GFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI--VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (306)
.+.++|+++.|+++++-+.+.+-+.-...-+.| +..+.-..++..|.++-+..+..+ .-+......-...-...|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 477899999999999888765433333332322 222223457778888777776543 22444444444555667999
Q ss_pred HHHHHHHHhcCcCCchhHHHHH---HHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 046638 114 NDANKVFSSMDERDLVSWNSLL---LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190 (306)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (306)
++|.+.|++....|...-.+|. -.+-..|+.++|++.|-++... +..+......+.+.|-...+...|++++-+..
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999999987765444443 3467889999999999887543 23366677788899999999999999987765
Q ss_pred hcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHH
Q 046638 191 NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAI 268 (306)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 268 (306)
.+.|.++.+...|...|-+.|+-..|.+.+-.--. .-+..+..-|..-|....-+++++.+|+++--+.|+...-
T Consensus 586 ---slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 586 ---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred ---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 45577999999999999999999999987655443 2455666667777888888999999999999999976666
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 269 YVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 269 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
...++.++.+.|++++|.++|+.+.+.
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 667778889999999999999988653
No 54
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=8e-11 Score=97.77 Aligned_cols=289 Identities=11% Similarity=0.031 Sum_probs=216.0
Q ss_pred hhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHH
Q 046638 6 YSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGK 82 (306)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (306)
+-..|++-.|+.++.+.. +.+...|-.-+..-..+.+++.|..+|.+.... .|+...|..-+..---.++.++|.
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHH
Confidence 334577777877777653 235667777777777888888888888777663 467777766666666677888888
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046638 83 QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159 (306)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 159 (306)
+++++.++.- +.-...|-.+...+-+.++++.|.+.|..-.+ | .+..|-.|...--+.|.+-.|..++++.+-.++
T Consensus 672 rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 672 RLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 8888877763 23455677777788888888888887776654 3 345677777777777788888888888776665
Q ss_pred CccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHH
Q 046638 160 KPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALL 239 (306)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~ 239 (306)
. +...|...+..-.+.|+.+.|..+..+..+.. |.+...|..-|....+.++-.+..+.+++.. .|+.....+.
T Consensus 751 k-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec---p~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia 824 (913)
T KOG0495|consen 751 K-NALLWLESIRMELRAGNKEQAELLMAKALQEC---PSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIA 824 (913)
T ss_pred C-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHH
Confidence 5 66777778888888888888888887777654 3466677777777777777666666666655 3555666677
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCCCcC
Q 046638 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305 (306)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 305 (306)
..+-...++++|.+.|.++++.+|+.-.+|..+...+.+.|.-++-.+++..... -.|..|..|
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W 888 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELW 888 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHH
Confidence 7788888999999999999999999888999999999999998888899887765 346666666
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=8.7e-11 Score=97.58 Aligned_cols=282 Identities=14% Similarity=0.099 Sum_probs=175.3
Q ss_pred hhhhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhcCChHHHHHHHHH----HHHcCCCCChhhHHHHHHHhcccc
Q 046638 4 LTYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSE----MRQAGIDIDYFTITSIVGAIGVIS 76 (306)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~ 76 (306)
-+|++.--++.|.++++..+ +.+...|.+-...=-.+|+.+...+++.+ +...|+..+...|..=...|-..|
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 45677777788888887754 35777777766666678888888887765 345677777777777677777777
Q ss_pred chhhHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHH
Q 046638 77 GFKEGKQMHALIFKIGYDS--NVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLF 151 (306)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 151 (306)
..-.+..+....+..|++- -..||+.-...|.+.+.++-|..+|....+ .+...|...+..--..|..++-..+|
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 7777777777777666542 235666667777777777777777776654 23445555555555556666666666
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-C
Q 046638 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-P 230 (306)
Q Consensus 152 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 230 (306)
++....-+ -....|......+-..|+...|..++....+.. |.+...|..-+.......++++|..+|.+.... |
T Consensus 574 qkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~---pnseeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 574 QKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN---PNSEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 66554422 233444444445555566666666665555433 335555555566666666666666666655543 5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHH
Q 046638 231 GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIR 289 (306)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 289 (306)
+...|..-+....-.++.++|.+++++.++..|+-+..|..++..+.+.++.+.|...|
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 55555555555555566666666666666666665566666666666666666666555
No 56
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=4e-11 Score=94.88 Aligned_cols=220 Identities=15% Similarity=0.199 Sum_probs=156.0
Q ss_pred chhhhhhcCChHHHHhhhhhccC----cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccc
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRT----RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISG 77 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 77 (306)
||.+.||--..+.|.+++++-.. .+..+||.+|.+-.- ....++..+|....+.||..|||.++++..+.|+
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~ 288 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGK 288 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcc
Confidence 68889999999999999988643 578889999876432 2337788999999999999999999999999997
Q ss_pred hhh----HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHH-HHHHHHhcCc------------CCchhHHHHHHHHHh
Q 046638 78 FKE----GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIND-ANKVFSSMDE------------RDLVSWNSLLLGCAH 140 (306)
Q Consensus 78 ~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~------------~~~~~~~~l~~~~~~ 140 (306)
++. |.+++.+|++.|++|...+|..++..+.+.++..+ |..++.++.. .|...|-..++.|.+
T Consensus 289 F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~ 368 (625)
T KOG4422|consen 289 FEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSS 368 (625)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHH
Confidence 755 46788899999999999999999999999988754 4444444331 244456666777777
Q ss_pred cCCHHHHHHHHHHHHhcC----CCccH---HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhcc
Q 046638 141 HGYSREAVQLFEQMQKTE----IKPDG---TTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA 213 (306)
Q Consensus 141 ~~~~~~a~~~~~~m~~~~----~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (306)
..+.+-|..+-.-+.... +.|+. .-|..+....|+....+.-...|+.|.-.-.+ |+..+...++++....
T Consensus 369 l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~--p~~~~m~~~lrA~~v~ 446 (625)
T KOG4422|consen 369 LRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF--PHSQTMIHLLRALDVA 446 (625)
T ss_pred hhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec--CCchhHHHHHHHHhhc
Confidence 777777776655443211 22221 23455666667777777777777777653322 3666666677776666
Q ss_pred CChHHHHHHHHHhc
Q 046638 214 GFLNEAESFINSMS 227 (306)
Q Consensus 214 ~~~~~a~~~~~~~~ 227 (306)
|.++-.-+++..+.
T Consensus 447 ~~~e~ipRiw~D~~ 460 (625)
T KOG4422|consen 447 NRLEVIPRIWKDSK 460 (625)
T ss_pred CcchhHHHHHHHHH
Confidence 66666655555543
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.2e-11 Score=98.34 Aligned_cols=270 Identities=11% Similarity=-0.013 Sum_probs=214.2
Q ss_pred hhhhhcCChHHHHhhhhhccC---cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhh
Q 046638 4 LTYSRCDSSLDFQNVYSSVRT---RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKE 80 (306)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (306)
+-+-..+++++..++++.+.+ .+...+-.-|.++...|+..+-..+=.+|++.- +-.+.+|-.+..-|...|+.++
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHH
Confidence 345667888898888888644 455566677778999999998888888898863 4567889999888888899999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046638 81 GKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157 (306)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 157 (306)
|.++|.+....+.. -...|-.++..|+-.|..+.|+..+....+ .....+--+.--|.+.++.+.|...|.+....
T Consensus 331 ARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai 409 (611)
T KOG1173|consen 331 ARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI 409 (611)
T ss_pred HHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999998876643 467899999999999999999998877654 22333444556688899999999999998765
Q ss_pred CCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhc----CCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCC
Q 046638 158 EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND----ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPG 231 (306)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~ 231 (306)
.+. |+...+-+.-.....+.+.+|..+|+..... ....+....+++.|+.+|.+.+++++|+..+++... ..+
T Consensus 410 ~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 410 APS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred CCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 433 6677787877778899999999999876621 111112445689999999999999999999999876 367
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 046638 232 PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276 (306)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 276 (306)
..++.++.-.|...|+++.|++.|.+++.+.|++..+-..|..+.
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 788999999999999999999999999999999865555554443
No 58
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.52 E-value=3.3e-11 Score=104.02 Aligned_cols=289 Identities=17% Similarity=0.127 Sum_probs=204.1
Q ss_pred hhhhhhcCChHHHHhhhhhccCcc------hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHhcc
Q 046638 3 ILTYSRCDSSLDFQNVYSSVRTRN------QISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF--TITSIVGAIGV 74 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 74 (306)
.+.|.-.|+++.++.+.+.+...+ ..+|..+.++|-..|++++|..+|.+..+. .||.. .+..+.+.+..
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHH
Confidence 345566677777777777664422 445777888888888888888888777664 34443 33456777888
Q ss_pred ccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC----ChHHHHHHHHhcCcC---CchhHHHHHHHHHhcCCHHHH
Q 046638 75 ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICG----AINDANKVFSSMDER---DLVSWNSLLLGCAHHGYSREA 147 (306)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 147 (306)
.|+++.+...|+...+..+ -+..+...|+..|...+ ..+.|..++.+..++ |...|-.+...+-.. +...+
T Consensus 355 ~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~s 432 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWAS 432 (1018)
T ss_pred hchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHH
Confidence 8888888888888887753 35677777777777775 456677777766653 455666666666554 44444
Q ss_pred HHHHHHHH----hcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC--C-----CCCcHhHHHHHHHHHhccCCh
Q 046638 148 VQLFEQMQ----KTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS--L-----EPPRAEHYTAIVGLLGRAGFL 216 (306)
Q Consensus 148 ~~~~~~m~----~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~~~l~~~~~~~~~~ 216 (306)
+.+|.... ..+..+.....+.+...+...|+++.|...|+.....-. . ..++..+--.+..++-..+++
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 77666543 344446667788888888999999999999887765410 0 012333455677778888899
Q ss_pred HHHHHHHHHhcCC-CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 217 NEAESFINSMSRN-PGP-SVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 217 ~~a~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
+.|.+.|..+... |+- ..|..++......+...+|...++.++..+..+|..+..++..+.+...|..|.+-|+.+.+
T Consensus 513 ~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 513 EVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred hHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 9999999988874 554 34555554555668888999999999998888888999999999998888888887766654
Q ss_pred c
Q 046638 295 R 295 (306)
Q Consensus 295 ~ 295 (306)
.
T Consensus 593 ~ 593 (1018)
T KOG2002|consen 593 K 593 (1018)
T ss_pred h
Confidence 3
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.51 E-value=1.3e-11 Score=102.77 Aligned_cols=232 Identities=14% Similarity=0.131 Sum_probs=177.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCChhhH-HHHHHHhccccchhhHHHHHHHHHHc-----CC-Cc
Q 046638 29 SWNAIIAGFCNLGSGEQALKCFSEMRQA-----G-IDIDYFTI-TSIVGAIGVISGFKEGKQMHALIFKI-----GY-DS 95 (306)
Q Consensus 29 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~ 95 (306)
+...+...|...|+++.|+.+++..++. | ..|...+. +.+...|...+++.+|..+|++++.. |. .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444888999999999999999988664 2 12333333 33666788999999999999998753 21 12
Q ss_pred -cHHHHHHHHHHHHhcCChHHHHHHHHhcCc----------CCc-hhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC
Q 046638 96 -NVFVQNRLVFMYAICGAINDANKVFSSMDE----------RDL-VSWNSLLLGCAHHGYSREAVQLFEQMQKT---EIK 160 (306)
Q Consensus 96 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~ 160 (306)
-..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..++..+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 246788889999999999999998887753 222 24677788899999999999999876532 122
Q ss_pred cc----HHHHHHHHHHHHccCChHHHHHHHHHHHhcC-----CCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC---
Q 046638 161 PD----GTTFLVVLSACCHAGFIDKGLQYFYLMRNDA-----SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--- 228 (306)
Q Consensus 161 p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 228 (306)
++ ..+++.+...|...|++++|.++++.+.... ...+-....++.+...|.+.+++++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 3578999999999999999999998865431 22232356688899999999999999999987653
Q ss_pred -----CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 229 -----NPGP-SVYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 229 -----~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
.|+. .+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1443 5799999999999999999999998885
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=4.2e-11 Score=96.12 Aligned_cols=151 Identities=15% Similarity=0.095 Sum_probs=127.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHH
Q 046638 140 HHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219 (306)
Q Consensus 140 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (306)
-.|+.-.|..-|+..+.....++. .|..+...|....+.++..+.|+...+-. |.++.+|..-.+.+.-.+++++|
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld---p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD---PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC---CCCCchhHhHHHHHHHHHHHHHH
Confidence 457778888888888776655433 27777888999999999999999888644 56788899999999999999999
Q ss_pred HHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 220 ESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 220 ~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
..=|++...- .+...|..+..+..+.++++++...|++.++..|+.+..|+..+..+...+++++|.+.|+..++
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999998762 34556777777778889999999999999999999999999999999999999999999988765
No 61
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.50 E-value=5e-11 Score=100.32 Aligned_cols=258 Identities=12% Similarity=0.058 Sum_probs=178.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---
Q 046638 35 AGFCNLGSGEQALKCFSEMRQAGIDIDYF-TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC--- 110 (306)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 110 (306)
..+...|++++|++.+++-... .+|.. ........+.+.|+.++|..++..+++.++. +..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccc
Confidence 3456788888888888775543 34544 4455666778888888888888888888643 555555555555322
Q ss_pred --CChHHHHHHHHhcCc--CCchhHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHH
Q 046638 111 --GAINDANKVFSSMDE--RDLVSWNSLLLGCAHHGYSR-EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQY 185 (306)
Q Consensus 111 --g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 185 (306)
.+.+...++|+++.+ |...+...+.-.+.....+. .+..++..+...|++ .+|..+-..|....+.+-...+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 246667777777764 33333333322233222333 455666777888876 3566666666666555555555
Q ss_pred HHHHHhc----CC--------CCCCcH--hHHHHHHHHHhccCChHHHHHHHHHhcCC-CC-hhhHHHHHHHHHhcCCHH
Q 046638 186 FYLMRND----AS--------LEPPRA--EHYTAIVGLLGRAGFLNEAESFINSMSRN-PG-PSVYKALLSACQVHGNRE 249 (306)
Q Consensus 186 ~~~~~~~----~~--------~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~ 249 (306)
+...... +. ..||+. .++..+.+.|...|++++|++++++.+.. |+ +..|..-...+-+.|+++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 5554332 11 224455 34466788999999999999999988874 55 456777788899999999
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC
Q 046638 250 IAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298 (306)
Q Consensus 250 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 298 (306)
+|.+.++.+..+++.|...-+-.+..+.+.|++++|.+.+....+.+..
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~ 294 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVD 294 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCC
Confidence 9999999999999998888888889999999999999999888776653
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.50 E-value=5.8e-11 Score=94.55 Aligned_cols=215 Identities=12% Similarity=-0.002 Sum_probs=152.8
Q ss_pred cchhhHHHHHHHHHHcCC-C--ccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHH
Q 046638 76 SGFKEGKQMHALIFKIGY-D--SNVFVQNRLVFMYAICGAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQ 149 (306)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~ 149 (306)
+..+.++.-+.+++.... . .....|..+...|...|+.++|...|++..+ | +...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456667777777775321 2 2246688888899999999999999998874 3 56789999999999999999999
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC
Q 046638 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229 (306)
Q Consensus 150 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (306)
.|++..+..+. +..++..+..++...|++++|.+.|++..+.. |.++ ........+...+++++|.+.|++....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDP-YRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCH-HHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999876544 45677888888899999999999999988754 3233 1222223344567899999999765543
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHh-------hcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 046638 230 PGPSVYKALLSACQVHGNREIAVRSAKRVL-------DLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 297 (306)
.++..|. ........|+...+ ..++.+. +..|..+..|..++..+.+.|++++|+..|++..+.+.
T Consensus 195 ~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2222222 12233345555444 3444444 34555667899999999999999999999998876553
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.50 E-value=4.6e-11 Score=86.92 Aligned_cols=199 Identities=14% Similarity=0.084 Sum_probs=153.0
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhc
Q 046638 65 ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHH 141 (306)
Q Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 141 (306)
...|.-.|.+.|+...|..-+++.+++++. +..+|..+...|.+.|+.+.|.+.|++..+ .+..+.|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 444555677888888888888888887644 667888888888888888888888887764 4566788888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHH
Q 046638 142 GYSREAVQLFEQMQKTEIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220 (306)
Q Consensus 142 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (306)
|++++|...|++......-| ...+|..+.-+..+.|+.+.|...|++..+.. |..+.+...+.....+.|++..|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d---p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD---PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC---cCCChHHHHHHHHHHhcccchHHH
Confidence 88888888888887653222 24577788888888888888888888887655 345566778888888888888888
Q ss_pred HHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchH
Q 046638 221 SFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267 (306)
Q Consensus 221 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 267 (306)
.+++..... ++..+....|..-...|+.+.+-++=.++.+..|.++.
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 888887664 56666666777777888888888888888888887654
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.50 E-value=1.1e-13 Score=78.53 Aligned_cols=50 Identities=32% Similarity=0.666 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 046638 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV 74 (306)
Q Consensus 25 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 74 (306)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.50 E-value=5.1e-12 Score=91.83 Aligned_cols=195 Identities=14% Similarity=0.065 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcCcCC---chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 046638 98 FVQNRLVFMYAICGAINDANKVFSSMDERD---LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174 (306)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 174 (306)
.+...|...|...|+...|..-+++..+.| ..+|..+...|.+.|+.+.|.+.|++.....+. +....|.....+|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 455667777888888888888888877533 346777778888888888888888888766543 5556777777788
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHH
Q 046638 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAV 252 (306)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~ 252 (306)
..|++++|...|++........ .-..+|..+.-+..+.|+++.|.+.|++.... ..+.....+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~-~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYG-EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCC-CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888877654432 24566778888888888888888888877663 33455667777778888888888
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 253 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
.+++......+.+.......+..-...|+.+.+-++=..+.+
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888887775555667777777777788887777666555543
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.50 E-value=1.1e-13 Score=78.46 Aligned_cols=50 Identities=36% Similarity=0.711 Sum_probs=47.6
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHc
Q 046638 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175 (306)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 175 (306)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 67
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=3.8e-10 Score=90.54 Aligned_cols=251 Identities=13% Similarity=0.092 Sum_probs=151.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHH
Q 046638 39 NLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118 (306)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 118 (306)
..|++..|.++|++-.+ ..|+...|.+.|..=.+.+.++.|..+++..+-. .|+..+|.-.+..-.+.|.+..|.+
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 45666666666666655 3577777777777666677777777777776643 3666677666666667777777776
Q ss_pred HHHhcCc---------------------------------------C---------------------------------
Q 046638 119 VFSSMDE---------------------------------------R--------------------------------- 126 (306)
Q Consensus 119 ~~~~~~~---------------------------------------~--------------------------------- 126 (306)
+|+...+ |
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 6665432 0
Q ss_pred ------------CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHH--HHHHH----HH----HHHccCChHHHHH
Q 046638 127 ------------DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT--TFLVV----LS----ACCHAGFIDKGLQ 184 (306)
Q Consensus 127 ------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l----~~----~~~~~~~~~~a~~ 184 (306)
|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-. ++ .-....+.+.+.+
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 0011222233333334444444444444432 222110 00000 00 0112344445555
Q ss_pred HHHHHHhcCCCCCCcHhH----HHHHHHHHhccCChHHHHHHHHHhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 046638 185 YFYLMRNDASLEPPRAEH----YTAIVGLLGRAGFLNEAESFINSMSRN-PGPSVYKALLSACQVHGNREIAVRSAKRVL 259 (306)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (306)
+|+...+ +.|-...+ |...+..-.++.++..|.+++...... |-..++...|..-.+.++++.+..+|++.+
T Consensus 388 vyq~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5544443 11212222 222233334566677777777766654 777788888888888899999999999999
Q ss_pred hcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 046638 260 DLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 260 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 297 (306)
+..|.+..++...+..-...|+++.|..+|+-......
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 99999888998888888889999999999987766543
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.6e-10 Score=89.92 Aligned_cols=262 Identities=13% Similarity=0.001 Sum_probs=156.2
Q ss_pred cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh-HHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHH
Q 046638 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFT-ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRL 103 (306)
Q Consensus 25 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (306)
-|+.....+.+.+...|+.++|+..|++....+ |+..+ .....-.+.+.|+++....+...+.... +-+...|..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 366677777788888888888888888776632 33321 1222223346667777666666666542 2234444444
Q ss_pred HHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChH
Q 046638 104 VFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180 (306)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 180 (306)
+.......+++.|+.+-++..+ .++..+-.-...+...|++++|.-.|+..+...+ -+...|..++.+|...|++.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHH
Confidence 5555666777777777777664 3344444444566777777777777777655432 25667777777777777777
Q ss_pred HHHHHHHHHHhcCCCCCCcHhHHHHHH-HHHh-ccCChHHHHHHHHHhcC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHH
Q 046638 181 KGLQYFYLMRNDASLEPPRAEHYTAIV-GLLG-RAGFLNEAESFINSMSR-NPGP-SVYKALLSACQVHGNREIAVRSAK 256 (306)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 256 (306)
+|..+-+...+.. |.+..+.+.+. ..+. ...--++|..++++..+ +|+- ...+.+...+...|..+.++.+++
T Consensus 386 EA~~~An~~~~~~---~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRLF---QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHh---hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 7766655544322 23555555443 2222 22334566666666654 2432 234445555666677777777777
Q ss_pred HHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 257 RVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 257 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
+.+...|++ .....|+..+...+.+++|.+.|....+
T Consensus 463 ~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 463 KHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 777666643 5666777777777777777666655543
No 69
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.42 E-value=1.3e-11 Score=96.88 Aligned_cols=248 Identities=14% Similarity=0.080 Sum_probs=154.4
Q ss_pred hhcCChHHHHhhhhh--ccC-cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHH
Q 046638 7 SRCDSSLDFQNVYSS--VRT-RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83 (306)
Q Consensus 7 ~~~g~~~~A~~~~~~--~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (306)
--.|++..++.-.+. ..+ .+......+.+++...|+++.++ .+..... .|.......+...+...++-+.+..
T Consensus 12 fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 12 FYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 345777777754441 111 12334455678888888877554 3333332 5666666666665554445555555
Q ss_pred HHHHHHHcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc
Q 046638 84 MHALIFKIGYD-SNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162 (306)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 162 (306)
-++........ .+.........++...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.+ .|
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc
Confidence 55444333322 23333333445677778888888888766 455666677788888888888888888887653 23
Q ss_pred HHHHHHHHHHHHc----cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHH
Q 046638 163 GTTFLVVLSACCH----AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYK 236 (306)
Q Consensus 163 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 236 (306)
.+...+..++.. .+.+.+|..+|+++.+.. ++++.+.+.++.++...|++++|.+++.+.... .++.+..
T Consensus 164 -~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~---~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 164 -SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF---GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp -HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 334445554433 336788888888887654 347778888888888888888888888887663 3455666
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHHhhcCCCch
Q 046638 237 ALLSACQVHGNR-EIAVRSAKRVLDLWPNDP 266 (306)
Q Consensus 237 ~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 266 (306)
.++......|+. +.+.+++.++....|+.+
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 677766777776 667778888888888764
No 70
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.42 E-value=7.5e-10 Score=95.15 Aligned_cols=258 Identities=12% Similarity=0.030 Sum_probs=193.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChH
Q 046638 35 AGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN 114 (306)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 114 (306)
+.....|++++|++++.+..+.. +.....|.+|...|.+.|+.+++...+-.+-...++ |...|..+.....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHH
Confidence 33444599999999999999875 457789999999999999999999988777776644 7799999999999999999
Q ss_pred HHHHHHHhcCcCCch---hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHH----HHHHHHHHHHccCChHHHHHHHH
Q 046638 115 DANKVFSSMDERDLV---SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT----TFLVVLSACCHAGFIDKGLQYFY 187 (306)
Q Consensus 115 ~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~ 187 (306)
.|.-.|.+..+.+.. ..---+..|-+.|+...|.+.|.++.+..++.|.. +....+..+...++.+.|.+.++
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999864333 33344667889999999999999998775432322 22344556667777788888887
Q ss_pred HHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC---------------------------------------
Q 046638 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--------------------------------------- 228 (306)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------------------- 228 (306)
.....+... -+...++.++..|.+...++.|.........
T Consensus 305 ~~~s~~~~~-~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 305 GALSKEKDE-ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHhhcccc-ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 766532221 1445566777777776666666655443321
Q ss_pred ----------------------C-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-chHHHHHHHHHHhhcC
Q 046638 229 ----------------------N-----PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN-DPAIYVLLSNVSKATD 280 (306)
Q Consensus 229 ----------------------~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g 280 (306)
. .++..|.-+..+|...|++.+|+++|..+....+. +...|..++.+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 0 12223555667788889999999999999886664 5678899999999999
Q ss_pred ChhhHHHHHHHHhhc
Q 046638 281 CWDDAGDIRTLMYNR 295 (306)
Q Consensus 281 ~~~~a~~~~~~m~~~ 295 (306)
.+++|...|+.....
T Consensus 464 e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLIL 478 (895)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999999888753
No 71
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=2.4e-11 Score=103.93 Aligned_cols=238 Identities=13% Similarity=0.061 Sum_probs=156.6
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCc
Q 046638 49 CFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL 128 (306)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 128 (306)
++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++......++.+.+. +|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 4556777788888888888888888888888888 8888887777778888888888888888776655 6778
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHH-HH-------hcCCCccHHHHHHH--------------HHHHHccCChHHHHHHH
Q 046638 129 VSWNSLLLGCAHHGYSREAVQLFEQ-MQ-------KTEIKPDGTTFLVV--------------LSACCHAGFIDKGLQYF 186 (306)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~-m~-------~~~~~p~~~~~~~l--------------~~~~~~~~~~~~a~~~~ 186 (306)
.+|..|..+|..+||... ++..++ |. ..|+.....-+-.. +.-....|-++.+++++
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888654 222222 21 12322111111111 11222334455555554
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHhc-cCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCC
Q 046638 187 YLMRNDASLEPPRAEHYTAIVGLLGR-AGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD-LWPN 264 (306)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~ 264 (306)
..+-...-..| .. .+++-... ...+++-....+.....|++.+|..++..-...|+.+.|..++.+|.+ ..|-
T Consensus 163 ~~~Pvsa~~~p-~~----vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 163 AKVPVSAWNAP-FQ----VFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred hhCCcccccch-HH----HHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 43322111111 11 12333322 234555555555555568899999999999999999999999999988 4555
Q ss_pred chHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCCC
Q 046638 265 DPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303 (306)
Q Consensus 265 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 303 (306)
++..|..|+-+ .|+..-++.+++-|.+.|+.|+..+
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT 273 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSET 273 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcch
Confidence 55556666555 7778888889999999999988765
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.40 E-value=1.4e-09 Score=91.78 Aligned_cols=285 Identities=12% Similarity=0.020 Sum_probs=197.2
Q ss_pred hhhhhhcCChHHHHhhhhhccC--cchHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhc-c----
Q 046638 3 ILTYSRCDSSLDFQNVYSSVRT--RNQIS-WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIG-V---- 74 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~---- 74 (306)
+.++...|++++|++.++.-.. .|..+ .......+.+.|+.++|..+|..+++.+ |+...|...+..+. -
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3567889999999999988644 45444 4566788999999999999999999976 66666655444443 1
Q ss_pred -ccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh-HHHHHHHHhcCcCCc-hhHHHHHHHHHhcCCHHHHHHHH
Q 046638 75 -ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI-NDANKVFSSMDERDL-VSWNSLLLGCAHHGYSREAVQLF 151 (306)
Q Consensus 75 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~ 151 (306)
..+.+...++++++.+.-+ ...+...+.-.+..-..+ ..+..++..+....+ ..|+.|-..|....+.+-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp--~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYP--RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhCc--cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 2256777888888877643 222222222222221223 233444455555554 45666666666555555555555
Q ss_pred HHHHhc----C----------CCccH--HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCC
Q 046638 152 EQMQKT----E----------IKPDG--TTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF 215 (306)
Q Consensus 152 ~~m~~~----~----------~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (306)
...... + -+|+. .++..+...|...|++++|++++++..+.. |..+..|..-+..|-..|+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht---Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT---PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHCCC
Confidence 554422 1 12333 355677888889999999999999998755 5568899999999999999
Q ss_pred hHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CC-c------hHHHHHHHHHHhhcCChhh
Q 046638 216 LNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLW--PN-D------PAIYVLLSNVSKATDCWDD 284 (306)
Q Consensus 216 ~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~------~~~~~~l~~~~~~~g~~~~ 284 (306)
+.+|.+.++....- .|...-+..+..+.+.|++++|.+++....+.+ |. + .....-.+.+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999998762 455555556777889999999999999887743 32 1 1123455888999999999
Q ss_pred HHHHHHHHhh
Q 046638 285 AGDIRTLMYN 294 (306)
Q Consensus 285 a~~~~~~m~~ 294 (306)
|++.|..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 9988876654
No 73
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.37 E-value=1.9e-10 Score=90.49 Aligned_cols=246 Identities=13% Similarity=0.013 Sum_probs=171.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 046638 34 IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 34 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (306)
++-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.+.. .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 445667899999987666 322222223344556677888888876543 4444433 66677766666655554566
Q ss_pred HHHHHHHHhcCc-C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHH
Q 046638 114 NDANKVFSSMDE-R----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYL 188 (306)
Q Consensus 114 ~~a~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 188 (306)
+.++.-+++... + +....-.....+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777766542 2 2222223334567789999999998653 2556667788999999999999999999
Q ss_pred HHhcCCCCCCcHhHHHHHHHHHhc----cCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 046638 189 MRNDASLEPPRAEHYTAIVGLLGR----AGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLW 262 (306)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 262 (306)
|.+.. +..+...++.++.. .+.+.+|..+|+++..+ +++.+.+.+..+....|++++|.+++++++..+
T Consensus 157 ~~~~~-----eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 157 MQQID-----EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHCCS-----CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHhcC-----CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 98654 22344555555433 34799999999999886 677788888999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhhcCCh-hhHHHHHHHHhhc
Q 046638 263 PNDPAIYVLLSNVSKATDCW-DDAGDIRTLMYNR 295 (306)
Q Consensus 263 p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 295 (306)
|+++.+...++.+....|+. +.+.+++.++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999988 5677888888764
No 74
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=6.4e-10 Score=84.22 Aligned_cols=284 Identities=12% Similarity=0.070 Sum_probs=206.9
Q ss_pred chhhhhhcCChHHHHhhhhhccC---cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH-HHHhccccc
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRT---RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI-VGAIGVISG 77 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~ 77 (306)
++.-+.+..+++.|++++..-.+ ++....+.|..+|.+..++..|-..++++-.. .|...-|... .+.+.+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcc
Confidence 34455788889999998887643 36667888888999999999999999999774 4666666532 345667888
Q ss_pred hhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcC-cCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046638 78 FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD-ERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156 (306)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 156 (306)
+..|+++...|... ..........-.......+|+..+..+.++.. +.+..+.+.......+.|+++.|.+-|+...+
T Consensus 94 ~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 94 YADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred cHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 99999998888753 11111111112223445789999999999998 47777777777788899999999999999876
Q ss_pred c-CCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCC-----------cH---------------hHHHHHHHH
Q 046638 157 T-EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPP-----------RA---------------EHYTAIVGL 209 (306)
Q Consensus 157 ~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~---------------~~~~~l~~~ 209 (306)
- |.. ....|+..+ +..+.|+++.|++...++.++|....| |+ ..+|.-...
T Consensus 173 vsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAI 250 (459)
T KOG4340|consen 173 VSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAI 250 (459)
T ss_pred hcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhh
Confidence 4 555 455677555 667889999999999888876532221 11 223333344
Q ss_pred HhccCChHHHHHHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhH
Q 046638 210 LGRAGFLNEAESFINSMSRN----PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDA 285 (306)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 285 (306)
+.+.|+++.|.+.+..|+-+ .|+.|...+.-. -..+++....+-++-+++.+|-.+.||..++-.|++..-++.|
T Consensus 251 eyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 251 EYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred hhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHH
Confidence 56789999999999999763 677776665432 2355677777888888888887788999999999999999988
Q ss_pred HHHHHH
Q 046638 286 GDIRTL 291 (306)
Q Consensus 286 ~~~~~~ 291 (306)
-+++-+
T Consensus 330 ADvLAE 335 (459)
T KOG4340|consen 330 ADVLAE 335 (459)
T ss_pred HHHHhh
Confidence 887643
No 75
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=7.7e-11 Score=96.44 Aligned_cols=215 Identities=12% Similarity=0.097 Sum_probs=171.4
Q ss_pred hccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcC---CchhHHHHHHHHHhcCCHHHHH
Q 046638 72 IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER---DLVSWNSLLLGCAHHGYSREAV 148 (306)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 148 (306)
+.+.|++.+|.-.|+..++.++. +..+|..|+......++-..|+..+++..+- +..+..+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 45778899999999999988754 8899999999999999999999999988863 4567777888899999999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHH-----------HHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChH
Q 046638 149 QLFEQMQKTEIKPDGTTFLVVL-----------SACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLN 217 (306)
Q Consensus 149 ~~~~~m~~~~~~p~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (306)
..++.-+...++ |..+. ..+.....+....++|-.+....+.. +++.+...|.-.|--.|+++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~-~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTK-IDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCC-CChhHHhhhHHHHhcchHHH
Confidence 999887654321 10010 11222233445556665555544432 48888999999999999999
Q ss_pred HHHHHHHHhcC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 218 EAESFINSMSR-NP-GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 218 ~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
+|.+.|+..+. +| |...||.|...++...+.++|+..|.+++++.|.-.++...|+..|...|.+++|.+.|-+..
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999886 35 456799999999999999999999999999999988999999999999999999999886554
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=5.2e-09 Score=82.74 Aligned_cols=265 Identities=10% Similarity=-0.041 Sum_probs=202.6
Q ss_pred chhhhhhcCChHHHHhhhhhccCcchHHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRTRNQISW---NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF 78 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 78 (306)
+.+.|...|+.++|+..|++...-|+.+. ....-.+.+.|+.+....+...+.... .-+...|-.-.+.....+++
T Consensus 238 lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~ 316 (564)
T KOG1174|consen 238 LGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKF 316 (564)
T ss_pred HhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhH
Confidence 56778899999999999999765444432 233344668899999988888886642 23334444445555678899
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046638 79 KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155 (306)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 155 (306)
+.|+.+-++.++.+.. +...+-.-..++...|+.++|.-.|+.... -+...|.-|+.+|...|++.+|..+-+...
T Consensus 317 ~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 317 ERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred HHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 9999999999887643 566666667788999999999999998764 367899999999999999999998877665
Q ss_pred hcCCCccHHHHHHHH-HHHH-ccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CCh
Q 046638 156 KTEIKPDGTTFLVVL-SACC-HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PGP 232 (306)
Q Consensus 156 ~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~ 232 (306)
.. .+.+..+...+. ..|. ...--++|.++++.-.... |.-....+.+...+...|+.+.++.++++.... ||.
T Consensus 396 ~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~---P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 396 RL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN---PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred HH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC---CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence 43 233556666553 3333 3344578999998877544 446677788899999999999999999988775 899
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHH
Q 046638 233 SVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLL 272 (306)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 272 (306)
...+.|.+.+...+.+++|.+.|..+++.+|++..+..-|
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 9999999999999999999999999999999886554433
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.31 E-value=3e-08 Score=81.68 Aligned_cols=288 Identities=10% Similarity=0.009 Sum_probs=178.9
Q ss_pred hhhhcCChHHHHhhhhhcc---CcchH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH---HHHHhccc
Q 046638 5 TYSRCDSSLDFQNVYSSVR---TRNQI---SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITS---IVGAIGVI 75 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~---~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~ 75 (306)
.+...|+.+.+.+.+.... .++.. ........+...|++++|.+.+++..+.. +.|...+.. ........
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~ 93 (355)
T cd05804 15 LLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFS 93 (355)
T ss_pred HHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccc
Confidence 4555677777666665532 22222 22233445678899999999999998863 223334332 11111223
Q ss_pred cchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHH
Q 046638 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFE 152 (306)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 152 (306)
+..+.+.+.+.... ...+........+..++...|++++|...+++..+ .+...+..+..++...|++++|...++
T Consensus 94 ~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~ 172 (355)
T cd05804 94 GMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFME 172 (355)
T ss_pred cCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555554411 11222344555677889999999999999999875 345678888999999999999999999
Q ss_pred HHHhcCCC-ccH--HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHH-H--HHHHHHhccCChHHHHHH---H
Q 046638 153 QMQKTEIK-PDG--TTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHY-T--AIVGLLGRAGFLNEAESF---I 223 (306)
Q Consensus 153 ~m~~~~~~-p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~~~~~~a~~~---~ 223 (306)
+....... |+. ..|..+...+...|++++|..++++....... ++..... + .++.-+...|....+.++ .
T Consensus 173 ~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~ 251 (355)
T cd05804 173 SWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE-SDPALDLLDAASLLWRLELAGHVDVGDRWEDLA 251 (355)
T ss_pred hhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC-CChHHHHhhHHHHHHHHHhcCCCChHHHHHHHH
Confidence 98765432 232 34556788899999999999999998643321 1122111 1 223333444443333332 2
Q ss_pred HHhcCC-CC-hhhHH--HHHHHHHhcCCHHHHHHHHHHHhhcC-C---C-----chHHHHHHHHHHhhcCChhhHHHHHH
Q 046638 224 NSMSRN-PG-PSVYK--ALLSACQVHGNREIAVRSAKRVLDLW-P---N-----DPAIYVLLSNVSKATDCWDDAGDIRT 290 (306)
Q Consensus 224 ~~~~~~-~~-~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~~~~a~~~~~ 290 (306)
...... +. ...+. ....++...|+.+.|...++.+.... . . ........+.++...|++++|.+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~ 331 (355)
T cd05804 252 DYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLG 331 (355)
T ss_pred HHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 221111 11 11222 45556788999999999999987621 1 1 23445566777889999999999998
Q ss_pred HHhhc
Q 046638 291 LMYNR 295 (306)
Q Consensus 291 ~m~~~ 295 (306)
.....
T Consensus 332 ~al~~ 336 (355)
T cd05804 332 PVRDD 336 (355)
T ss_pred HHHHH
Confidence 77653
No 78
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=1.4e-08 Score=81.73 Aligned_cols=280 Identities=6% Similarity=-0.007 Sum_probs=147.4
Q ss_pred hcCChHHHHhhhhhcc--CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHH--
Q 046638 8 RCDSSLDFQNVYSSVR--TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ-- 83 (306)
Q Consensus 8 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-- 83 (306)
..|++..|+++|++.. +|+...|++.|+.=.+.+.++.|..++++.+- +.|+..+|-....-=.+.|+...+.+
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3578888888888853 58888888888888888888888888887765 34666665554444344444444433
Q ss_pred -----------------------------------HHHHHHHcC------------------------------------
Q 046638 84 -----------------------------------MHALIFKIG------------------------------------ 92 (306)
Q Consensus 84 -----------------------------------~~~~~~~~~------------------------------------ 92 (306)
+|+-.+..-
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 333322210
Q ss_pred -------CCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CCc---hhHHHHHH--------HHHhcCCHHHHHHHHH
Q 046638 93 -------YDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDL---VSWNSLLL--------GCAHHGYSREAVQLFE 152 (306)
Q Consensus 93 -------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---~~~~~l~~--------~~~~~~~~~~a~~~~~ 152 (306)
-+.|-.+|-..+..-...|+.+...++|++... |-. ..|.-.|- .-....+.+.+.++|+
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 011334455666666777888888888888763 111 11221111 1124567777777777
Q ss_pred HHHhcCCCccHHHHHHHHHHH----HccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 153 QMQKTEIKPDGTTFLVVLSAC----CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 153 ~m~~~~~~p~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
..++. ++....||..+--.| .++.++..|.+++...... . |...++...|..-.+.++++.+..++++...
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~---c-PK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK---C-PKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc---C-CchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66653 222333443332222 2444555555555544421 1 2444455555555555555555555555544
Q ss_pred -C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--chHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 229 -N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN--DPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 229 -~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
. .+..+|......-...|+.+.|..+|+-++....- ....+...+..-...|.++.|..+++++.+
T Consensus 466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 1 22334444444444455555555555554441110 122344444444445555555555555443
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.27 E-value=1.6e-09 Score=83.81 Aligned_cols=183 Identities=11% Similarity=-0.011 Sum_probs=125.0
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CCc----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH--HHH
Q 046638 95 SNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDL----VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG--TTF 166 (306)
Q Consensus 95 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~ 166 (306)
.....+..++..+...|++++|...|+++.+ |+. .++..+..++...|++++|...++++.+..+.... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 4566777788888888888888888887764 322 35677788888888888888888888765432221 234
Q ss_pred HHHHHHHHcc--------CChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHH
Q 046638 167 LVVLSACCHA--------GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238 (306)
Q Consensus 167 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l 238 (306)
..+..++.+. |+.+.|.+.++.+.+.. |.+...+..+..... ..... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 5555555544 67778888888877654 223323222221110 00000 0011245
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC---chHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 239 LSACQVHGNREIAVRSAKRVLDLWPN---DPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
...+...|++++|...++++++..|+ .+..+..++.++.+.|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66788999999999999999997665 4578999999999999999999999888754
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.26 E-value=2.6e-08 Score=77.11 Aligned_cols=290 Identities=12% Similarity=0.082 Sum_probs=204.9
Q ss_pred hhhhcCChHHHHhhhhhccCcchHHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCChhhHH-HHHHHhccccchhh
Q 046638 5 TYSRCDSSLDFQNVYSSVRTRNQISWNAII---AGFCNLGSGEQALKCFSEMRQAGIDIDYFTIT-SIVGAIGVISGFKE 80 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ 80 (306)
.+...|++..|+.-|....+.|+..|-++- ..|...|+-.-|+.=+.+.++ ++||-..-. .-...+.++|.+++
T Consensus 47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHH
Confidence 455677888888888888777777777665 468888988888888888887 467754322 22345678899999
Q ss_pred HHHHHHHHHHcCCCcc--HHHH------------HHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCC
Q 046638 81 GKQMHALIFKIGYDSN--VFVQ------------NRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGY 143 (306)
Q Consensus 81 a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 143 (306)
|..-|+..++..+... ..++ ...+..+...|+...|++....+.+ -|...+..-..+|...|+
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE 204 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc
Confidence 9999999888754221 1111 1234455667888888888888875 266777778888999999
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHH---------HHHHhccC
Q 046638 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAI---------VGLLGRAG 214 (306)
Q Consensus 144 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~~ 214 (306)
+..|+.-++...+.... +..++.-+-..+...|+.+.++....+..+....+...-..|..| +......+
T Consensus 205 ~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~ 283 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEK 283 (504)
T ss_pred HHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99998888777655433 445555667777888888888888877765442221111222221 12234556
Q ss_pred ChHHHHHHHHHhcCC-CChh-----hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHH
Q 046638 215 FLNEAESFINSMSRN-PGPS-----VYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDI 288 (306)
Q Consensus 215 ~~~~a~~~~~~~~~~-~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 288 (306)
++.++.+-.+...+. |... .+..+-..+...+++.+|++.-.++++..|+|..++.--+.+|.-...++.|+.-
T Consensus 284 ~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~d 363 (504)
T KOG0624|consen 284 HWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHD 363 (504)
T ss_pred hHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 777777777766553 5422 2344555667788999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC
Q 046638 289 RTLMYNRGI 297 (306)
Q Consensus 289 ~~~m~~~~~ 297 (306)
|+...+.+-
T Consensus 364 ye~A~e~n~ 372 (504)
T KOG0624|consen 364 YEKALELNE 372 (504)
T ss_pred HHHHHhcCc
Confidence 988776543
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=6.3e-08 Score=82.39 Aligned_cols=121 Identities=19% Similarity=0.086 Sum_probs=95.2
Q ss_pred HHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CC-ChhhHHHHHHHHHhcCCHH
Q 046638 172 ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NP-GPSVYKALLSACQVHGNRE 249 (306)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~ 249 (306)
.+.+.++.++|.-.+.+..... |-....|......+...|..++|.+.|..... .| ++.+..++...+.+.|+..
T Consensus 659 ~~~~~~~~~~a~~CL~Ea~~~~---~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~ 735 (799)
T KOG4162|consen 659 LFLLSGNDDEARSCLLEASKID---PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPR 735 (799)
T ss_pred HHHhcCCchHHHHHHHHHHhcc---hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcc
Confidence 3444455555555555544322 34666677777888888999999998887765 34 4567888999999999988
Q ss_pred HHHH--HHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 250 IAVR--SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 250 ~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
-|.. ++..+++.+|.++..|..++..+.+.|+.++|.+.|+...+.
T Consensus 736 la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 736 LAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 8888 999999999999999999999999999999999999877654
No 82
>PLN02789 farnesyltranstransferase
Probab=99.23 E-value=1.5e-08 Score=80.91 Aligned_cols=208 Identities=10% Similarity=0.008 Sum_probs=91.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHhcccc-chhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 046638 35 AGFCNLGSGEQALKCFSEMRQAGIDIDY-FTITSIVGAIGVIS-GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112 (306)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (306)
..+...++.++|+.+..++++. .|+. .+|+....++...+ ++++++..++++.+..++ +..+|+....++.+.|+
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCc
Confidence 3344455555555555555553 2322 23333333333333 345555555555554432 33444444333333333
Q ss_pred hHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 046638 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192 (306)
Q Consensus 113 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (306)
. ..++++.+++++.+...+ +..+|....-++...|+++++++.++++.+.
T Consensus 122 ~-----------------------------~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 122 D-----------------------------AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred h-----------------------------hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1 013344444444444332 3444444444444444555555555554443
Q ss_pred CCCCCCcHhHHHHHHHHHhcc---CCh----HHHHHHHHHhcC-C-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHh
Q 046638 193 ASLEPPRAEHYTAIVGLLGRA---GFL----NEAESFINSMSR-N-PGPSVYKALLSACQV----HGNREIAVRSAKRVL 259 (306)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~---~~~----~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 259 (306)
. |.+..+|+.....+.+. |.. ++..+...++.. . .+...|+.+...+.. .++..+|.+.+.+..
T Consensus 172 d---~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 172 D---VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred C---CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 3 12334444443333322 111 234444433332 2 233444444444444 123344556666655
Q ss_pred hcCCCchHHHHHHHHHHhh
Q 046638 260 DLWPNDPAIYVLLSNVSKA 278 (306)
Q Consensus 260 ~~~p~~~~~~~~l~~~~~~ 278 (306)
..+|+++.....|+..|..
T Consensus 249 ~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 249 SKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred cccCCcHHHHHHHHHHHHh
Confidence 5566666666666666654
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=2.8e-07 Score=75.98 Aligned_cols=267 Identities=10% Similarity=-0.008 Sum_probs=172.1
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhH-HHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHH-
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI-DIDYFTI-TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR- 102 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 102 (306)
....|..+...+...|+.+.+...+....+... .++.... ......+...|++++|.+++++..+..+. +...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHh
Confidence 355677777888888999998888777655422 2222212 22233456789999999999999987543 4444442
Q ss_pred --HHHHHHhcCChHHHHHHHHhcCc--CC-chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccC
Q 046638 103 --LVFMYAICGAINDANKVFSSMDE--RD-LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177 (306)
Q Consensus 103 --l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 177 (306)
+.......+..+.+.+.+..... |+ ......+...+...|++++|...+++..+..+. +...+..+..++...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence 22222234556666666655332 22 234455667889999999999999999887543 5667788899999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcH--hHHHHHHHHHhccCChHHHHHHHHHhcCC-CChhhHH------HHHHHHHhcCCH
Q 046638 178 FIDKGLQYFYLMRNDASLEPPRA--EHYTAIVGLLGRAGFLNEAESFINSMSRN-PGPSVYK------ALLSACQVHGNR 248 (306)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~------~l~~~~~~~~~~ 248 (306)
++++|..++++....... ++.. ..|..+...+...|++++|..++++.... |...... .++.-+...|..
T Consensus 163 ~~~eA~~~l~~~l~~~~~-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 163 RFKEGIAFMESWRDTWDC-SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CHHHHHHHHHhhhhccCC-CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999988764422 1232 34567889999999999999999997642 3122221 222223344443
Q ss_pred HHHHHH--HHHH-hhcCCC--chHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 249 EIAVRS--AKRV-LDLWPN--DPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 249 ~~a~~~--~~~~-~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
..+.+. +... ....|. ........+.++...|+.++|...++.+...
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 333332 1111 111122 1222336777888999999999999988753
No 84
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.18 E-value=4.4e-09 Score=90.47 Aligned_cols=234 Identities=15% Similarity=0.179 Sum_probs=161.3
Q ss_pred cCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHH
Q 046638 23 RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR 102 (306)
Q Consensus 23 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (306)
..||.++|..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++......++.+.+. .|...+|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 5688999999999999999999998 9999988888888899999999998888887775 678899999
Q ss_pred HHHHHHhcCChHH---HHHHHHhcCc---C-------------------CchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046638 103 LVFMYAICGAIND---ANKVFSSMDE---R-------------------DLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157 (306)
Q Consensus 103 l~~~~~~~g~~~~---a~~~~~~~~~---~-------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 157 (306)
|..+|...||+.. ..+.+..+.. + ....-...+......|-|+.+++++..+-..
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 9999999999665 2222222221 0 0011123344455566777777776655321
Q ss_pred C-CCccHHHHHHHHHHHHccCC-hHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC---CCh
Q 046638 158 E-IKPDGTTFLVVLSACCHAGF-IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN---PGP 232 (306)
Q Consensus 158 ~-~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 232 (306)
. ..| +..+++-+..... +++-..+.....+ .|+..++..+.++-...|+.+.|..++.+|.++ -..
T Consensus 169 a~~~p----~~vfLrqnv~~ntpvekLl~~cksl~e-----~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 169 AWNAP----FQVFLRQNVVDNTPVEKLLNMCKSLVE-----APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred cccch----HHHHHHHhccCCchHHHHHHHHHHhhc-----CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 1 111 1112444433332 3333333333332 258999999999999999999999999999986 344
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCchHHHHHHHHHHhhcCC
Q 046638 233 SVYKALLSACQVHGNREIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDC 281 (306)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~ 281 (306)
..|..++-+ .++...++.+++.|.+ ..|++ .|+......+...|.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~s-eT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGS-ETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCc-chhHHHHHhhhcchh
Confidence 445555544 7888888888888887 57754 677766666666554
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=8.6e-09 Score=84.77 Aligned_cols=248 Identities=15% Similarity=0.042 Sum_probs=191.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 046638 34 IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 34 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (306)
..-+.+.|++.+|.-+|+..++.+ +-+...|..|.......++-..|+..+++.++.++. +..+.-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 344678999999999999998875 346689999999999999999999999999998754 788888999999999999
Q ss_pred HHHHHHHHhcCc--C----------CchhHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCCccHHHHHHHHHHHHccCChH
Q 046638 114 NDANKVFSSMDE--R----------DLVSWNSLLLGCAHHGYSREAVQLFEQM-QKTEIKPDGTTFLVVLSACCHAGFID 180 (306)
Q Consensus 114 ~~a~~~~~~~~~--~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~ 180 (306)
..|...++.-.. | +...-+. ..+..........++|-++ .+.+..+|......|.-.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 999999987642 1 1100000 1222223345556666555 44554567777888888899999999
Q ss_pred HHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPG-PSVYKALLSACQVHGNREIAVRSAKRV 258 (306)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (306)
+|...|+.+.... |.|...||.|.-.+....+.++|+..|.+.+. +|+ +.....|.-+|...|.+++|.+.|=.+
T Consensus 448 raiDcf~~AL~v~---Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVK---PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcC---CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999998644 67999999999999999999999999999987 465 356667888899999999999999998
Q ss_pred hhcCCC----------chHHHHHHHHHHhhcCChhhHHHH
Q 046638 259 LDLWPN----------DPAIYVLLSNVSKATDCWDDAGDI 288 (306)
Q Consensus 259 ~~~~p~----------~~~~~~~l~~~~~~~g~~~~a~~~ 288 (306)
+.+.+. +..++..|=.++.-.++.|.+..+
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 874332 124677777777777777655443
No 86
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.17 E-value=5.6e-09 Score=77.74 Aligned_cols=151 Identities=14% Similarity=0.110 Sum_probs=94.9
Q ss_pred HHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHH
Q 046638 104 VFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183 (306)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 183 (306)
+..|...|+++.+....+.+..+.. .+...++.+++...+++..+..+. +...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 3457777777776554433332210 112356666777777666665433 5666777777777777777777
Q ss_pred HHHHHHHhcCCCCCCcHhHHHHHHHHH-hccCC--hHHHHHHHHHhcCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 184 QYFYLMRNDASLEPPRAEHYTAIVGLL-GRAGF--LNEAESFINSMSRN-P-GPSVYKALLSACQVHGNREIAVRSAKRV 258 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (306)
..|++..+.. |.+...+..+..++ ...|+ .++|.+++++.... | +...+..+...+...|++++|+..|+++
T Consensus 94 ~a~~~Al~l~---P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQLR---GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777776544 44666777777653 55565 47777777777652 3 4455666666677777777777777777
Q ss_pred hhcCCCch
Q 046638 259 LDLWPNDP 266 (306)
Q Consensus 259 ~~~~p~~~ 266 (306)
++..|++.
T Consensus 171 L~l~~~~~ 178 (198)
T PRK10370 171 LDLNSPRV 178 (198)
T ss_pred HhhCCCCc
Confidence 77666543
No 87
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.17 E-value=2e-07 Score=77.97 Aligned_cols=283 Identities=10% Similarity=0.126 Sum_probs=160.2
Q ss_pred hhcCChHHHHhhhhhccC---cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHH
Q 046638 7 SRCDSSLDFQNVYSSVRT---RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQ 83 (306)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (306)
...|+-++|......... .+.+.|+.+.-.+....++++|+++|...+..+ +-|...+.-+.-.-++.++++....
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 445777778777776543 456778888888888888999999998887753 1233444433333344455555444
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc-----CC-------------------------------
Q 046638 84 MHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-----RD------------------------------- 127 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~------------------------------- 127 (306)
.....++..+. ....|..++.++.-.|+...|.+++++..+ ++
T Consensus 131 tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 131 TRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 44444443221 233344444444444555555444443321 11
Q ss_pred ---------chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHH-HHHHHHccCChHHHH-HHHHHHHhcCCCC
Q 046638 128 ---------LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV-VLSACCHAGFIDKGL-QYFYLMRNDASLE 196 (306)
Q Consensus 128 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~-~~~~~~~~~~~~~ 196 (306)
...-.+-...+.+.+++++|..++..++.. .||...|.. +..++.+-.+.-++. .+|....+.....
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 111223345566778888888888888765 355554443 344443233333333 5666554432110
Q ss_pred C-C----------------------------cHhHHHHHHHHHhccCChHHHHHHHHHhc--------C-----------
Q 046638 197 P-P----------------------------RAEHYTAIVGLLGRAGFLNEAESFINSMS--------R----------- 228 (306)
Q Consensus 197 ~-~----------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~----------- 228 (306)
. | -+.++..+...|-.-. ++- +++++. .
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~---k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE---KVA-FLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh---HhH-HHHHHHHHHHhhcccccCCCcccccc
Confidence 0 0 0111222222221111 111 222221 0
Q ss_pred --CCChhhHH--HHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 046638 229 --NPGPSVYK--ALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 229 --~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 297 (306)
.|....|. .++..+-..|+++.|...++.++...|.-+..|..-++.+...|+.++|..++++..+.+.
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 13333333 4566688889999999999999999998888888889999999999999999988876543
No 88
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.15 E-value=6.8e-07 Score=74.95 Aligned_cols=214 Identities=13% Similarity=0.104 Sum_probs=140.6
Q ss_pred cchhhHHHHHHHHHHcCCCc------cHHHHHHHHHHHHhcCChHHHHHHHHhcCcCC-------chhHHHHHHHHHhcC
Q 046638 76 SGFKEGKQMHALIFKIGYDS------NVFVQNRLVFMYAICGAINDANKVFSSMDERD-------LVSWNSLLLGCAHHG 142 (306)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~ 142 (306)
|+..+-...+.++.+. +.| -...|..+...|-..|+++.|..+|++..+-+ ..+|..-...=.++.
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 3444455555555543 122 23467788888999999999999999887622 235555566666778
Q ss_pred CHHHHHHHHHHHHhcCCC----------c-------cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHH
Q 046638 143 YSREAVQLFEQMQKTEIK----------P-------DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205 (306)
Q Consensus 143 ~~~~a~~~~~~m~~~~~~----------p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 205 (306)
+++.|+.++++.....-. | +...|...+..--..|-++....+|+++.+.... ++.....
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria---TPqii~N 516 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA---TPQIIIN 516 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC---CHHHHHH
Confidence 888888888776432111 1 1223334444445567788888888888876554 4455555
Q ss_pred HHHHHhccCChHHHHHHHHHhcC--C-CCh-hhHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCc--hHHHHHHHHHH
Q 046638 206 IVGLLGRAGFLNEAESFINSMSR--N-PGP-SVYKALLSACQV---HGNREIAVRSAKRVLDLWPND--PAIYVLLSNVS 276 (306)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~--~-~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 276 (306)
.+..+-...-++++.+++++-.. + |+. ..|+..+.-+.+ ...++.|..+|+++++..|+. ...|...+..-
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 56666677788999999998775 2 554 356666655433 346899999999999988852 23444455555
Q ss_pred hhcCChhhHHHHHHHHh
Q 046638 277 KATDCWDDAGDIRTLMY 293 (306)
Q Consensus 277 ~~~g~~~~a~~~~~~m~ 293 (306)
.+-|....|++++++..
T Consensus 597 Ee~GLar~amsiyerat 613 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERAT 613 (835)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 66788888888888753
No 89
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.14 E-value=1.5e-08 Score=91.14 Aligned_cols=199 Identities=13% Similarity=0.092 Sum_probs=135.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcCc--------CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHH
Q 046638 96 NVFVQNRLVFMYAICGAINDANKVFSSMDE--------RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL 167 (306)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 167 (306)
+...|-..|......+++++|.+++++... .-...|.++++.-...|.-+...++|+++.+.- . ....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHHH
Confidence 455666677777777777777777777653 122356667666666676777777777776541 1 233466
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-C---ChhhHHHHHHHHH
Q 046638 168 VVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-P---GPSVYKALLSACQ 243 (306)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~---~~~~~~~l~~~~~ 243 (306)
.|...|.+.+.+++|.++++.|.+..+ ....+|...+..+.+.++-+.|..++.+.... | ........+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~---q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG---QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc---chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 677777777777777777777777654 25566777777777777777777777776652 2 2333444455556
Q ss_pred hcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCC
Q 046638 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299 (306)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 299 (306)
+.|+.+++..+|+..+.-.|.....|+.++..-.+.|+.+.++++|++....++.|
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 67777777777777777777766777777777777777777777777777766654
No 90
>PLN02789 farnesyltranstransferase
Probab=99.14 E-value=2.9e-07 Score=73.55 Aligned_cols=203 Identities=10% Similarity=0.044 Sum_probs=138.0
Q ss_pred hhhhhcCChHHHHhhhhhccCc---chHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch-
Q 046638 4 LTYSRCDSSLDFQNVYSSVRTR---NQISWNAIIAGFCNLG-SGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF- 78 (306)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 78 (306)
.++...++.++|+...+.+... +..+|+.-...+...| ++++++..++++.+.+. -+..+|+.....+.+.+..
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchh
Confidence 3456677888899988887543 4445665556666777 68999999999988653 3455677665555556653
Q ss_pred -hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhc---CCH----HHH
Q 046638 79 -KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHH---GYS----REA 147 (306)
Q Consensus 79 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~---~~~----~~a 147 (306)
+++..+++++++.+++ +..+|+....++...|+++++++.++++.+ .+..+|+.....+.+. |.. ++.
T Consensus 124 ~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 124 ANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred hHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 6788899899988754 788999888888888999999999998875 4566777777666554 222 355
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHcc----CChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhc
Q 046638 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHA----GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGR 212 (306)
Q Consensus 148 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (306)
++...+++...+. +...|+.+...+... ++..+|.+.+.+..... |.+......|++.|+.
T Consensus 203 l~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~---~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD---SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc---CCcHHHHHHHHHHHHh
Confidence 6666666655443 566676666666652 33455666666655422 3456666666666664
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.12 E-value=8.5e-09 Score=72.76 Aligned_cols=124 Identities=12% Similarity=0.057 Sum_probs=98.4
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhc
Q 046638 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 148 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (306)
..++++..+. .|+. +.....++...|++++|...|+...... |.+...+..+..++...|++++|...|++..
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455665544 3443 4456778889999999999999887644 5688889999999999999999999999887
Q ss_pred CC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhh
Q 046638 228 RN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278 (306)
Q Consensus 228 ~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 278 (306)
.- .++..+..+..++...|++++|+..|+++++..|+++..+.....+...
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 62 4567788888889999999999999999999999988888776665543
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.9e-07 Score=75.43 Aligned_cols=282 Identities=13% Similarity=0.065 Sum_probs=190.6
Q ss_pred hhhhcCChHHHHhhhhhc---cCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHhccccchhh
Q 046638 5 TYSRCDSSLDFQNVYSSV---RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY-FTITSIVGAIGVISGFKE 80 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 80 (306)
+....|+++.|+..|-.. .++|-+.|..=..+|+..|++++|++=-.+-++ +.|+- ..|.....++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 456789999999999874 456888898899999999999999887766666 45764 578888889999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC------------------------------------------------
Q 046638 81 GKQMHALIFKIGYDSNVFVQNRLVFMYAICGA------------------------------------------------ 112 (306)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------------------------------------------ 112 (306)
|+.-|.+-++..+. +...++.|..++.....
T Consensus 89 A~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 99999998887643 66666767666521100
Q ss_pred ---hHHHHHHHHhcC----------------cC------------C----------chhHHHHHHHHHhcCCHHHHHHHH
Q 046638 113 ---INDANKVFSSMD----------------ER------------D----------LVSWNSLLLGCAHHGYSREAVQLF 151 (306)
Q Consensus 113 ---~~~a~~~~~~~~----------------~~------------~----------~~~~~~l~~~~~~~~~~~~a~~~~ 151 (306)
+..+.-.+.... .| | ......+.+...+..+++.|++-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 000111100000 00 0 012445666777777888888888
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHH-------HHHHHHhccCChHHHHHHHH
Q 046638 152 EQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT-------AIVGLLGRAGFLNEAESFIN 224 (306)
Q Consensus 152 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~~ 224 (306)
....... -+..-++....+|...|.+.......+...+.+.. ...-|+ .+..+|.+.++++.++..|.
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre---~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE---LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH---HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 8877664 24445566677788888777766666555554431 222222 23345666778888888887
Q ss_pred HhcCC---CChhh-------------------------HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 046638 225 SMSRN---PGPSV-------------------------YKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276 (306)
Q Consensus 225 ~~~~~---~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 276 (306)
+.... |+... ...-...+.+.|++..|++.|.+++..+|+|+..|...+-+|
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 76542 11110 111244567788999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHhh
Q 046638 277 KATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~ 294 (306)
.+.|.+..|++-.+...+
T Consensus 403 ~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHhhHHHHHHHHHHHHh
Confidence 999988888876555544
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.10 E-value=3.4e-07 Score=84.86 Aligned_cols=291 Identities=8% Similarity=-0.054 Sum_probs=191.7
Q ss_pred hhhhcCChHHHHhhhhhcc----Cc----c----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHH
Q 046638 5 TYSRCDSSLDFQNVYSSVR----TR----N----QISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY----FTITSI 68 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~----~~----~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l 68 (306)
.+...|++++|...++... .. + ......+...+...|++++|...+++..+.-...+. ...+.+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 3456788899888887642 11 1 111222344567899999999999998763211121 233445
Q ss_pred HHHhccccchhhHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHhcCc-------CC----chhHH
Q 046638 69 VGAIGVISGFKEGKQMHALIFKI----GY-DSNVFVQNRLVFMYAICGAINDANKVFSSMDE-------RD----LVSWN 132 (306)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~----~~~~~ 132 (306)
...+...|++++|...+++.... |. .....++..+...+...|++++|...+++... ++ ...+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 55667899999999999888753 21 11224556677788999999999999887653 11 12344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc----CCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHh--H--HH
Q 046638 133 SLLLGCAHHGYSREAVQLFEQMQKT----EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAE--H--YT 204 (306)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~--~~ 204 (306)
.+...+...|++++|...+.+.... +.......+..+...+...|+.+.|.+.++.............. . ..
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 5566777889999999999887542 21112334555667788899999999998887542111010111 0 01
Q ss_pred HHHHHHhccCChHHHHHHHHHhcCC--CChh----hHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCchHHHHHH
Q 046638 205 AIVGLLGRAGFLNEAESFINSMSRN--PGPS----VYKALLSACQVHGNREIAVRSAKRVLDLW------PNDPAIYVLL 272 (306)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l 272 (306)
..+..+...|+.+.|.+++...... .... .+..+..++...|+.++|...++++.... +....+...+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 1224455689999999998776642 1111 13456667888999999999999988731 1234567788
Q ss_pred HHHHhhcCChhhHHHHHHHHhhc
Q 046638 273 SNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 273 ~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
+.++.+.|+.++|...+.+..+.
T Consensus 738 a~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999888754
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.10 E-value=2.7e-08 Score=76.92 Aligned_cols=66 Identities=9% Similarity=-0.048 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHhccccchhhHHHHHHHHHHcCC
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY----FTITSIVGAIGVISGFKEGKQMHALIFKIGY 93 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 93 (306)
....+..+...+...|++++|...|+++.... |+. .++..+..++.+.|++++|...++++.+..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP 101 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 44555666666666777777777777666532 321 2445555566666666667666666666543
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.09 E-value=4.4e-08 Score=72.98 Aligned_cols=146 Identities=11% Similarity=0.047 Sum_probs=94.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCC
Q 046638 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF 215 (306)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (306)
..|...|+++.+....+.+.. |. . .+...++.+++...++...+.. |.+...|..+...|...|+
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~---P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCC
Confidence 456777777776544432211 11 0 1122555566666666665543 4577777777777777778
Q ss_pred hHHHHHHHHHhcCC--CChhhHHHHHHH-HHhcCC--HHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHH
Q 046638 216 LNEAESFINSMSRN--PGPSVYKALLSA-CQVHGN--REIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRT 290 (306)
Q Consensus 216 ~~~a~~~~~~~~~~--~~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 290 (306)
+++|...|++...- .+...+..+..+ +...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88777777777652 345556666665 355565 4777777777777777777777777777777788888877777
Q ss_pred HHhhcC
Q 046638 291 LMYNRG 296 (306)
Q Consensus 291 ~m~~~~ 296 (306)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 776543
No 96
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.08 E-value=1.6e-07 Score=78.55 Aligned_cols=235 Identities=13% Similarity=0.074 Sum_probs=123.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHH
Q 046638 39 NLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANK 118 (306)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 118 (306)
..+++...++..+..++. .+-...|.....-.+...|+-++|.......+..++. +.+.|..++-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 555666666666665552 2222334443333445556666666666666655443 55566666666666666666666
Q ss_pred HHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC
Q 046638 119 VFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195 (306)
Q Consensus 119 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 195 (306)
.|+.... .|...|.-+.-.-.+.|+++.....-.++.+..+. ....|..+..++.-.|+...|..+++...+...
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~- 174 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQN- 174 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 6665542 34445555555555566666666655555554322 334455555566666666666666666555443
Q ss_pred CCCcHhHHHHHH------HHHhccCChHHHHHHHHHhcCC-CChhh-HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchH
Q 046638 196 EPPRAEHYTAIV------GLLGRAGFLNEAESFINSMSRN-PGPSV-YKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267 (306)
Q Consensus 196 ~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 267 (306)
.+|+...+.... ....+.|.+++|.+.+...... .|... -..-...+.+.+++++|..++...+..+|++..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 223443333222 2233455555555555444322 11111 122333455666666666666666666666655
Q ss_pred HHHHHHHHHh
Q 046638 268 IYVLLSNVSK 277 (306)
Q Consensus 268 ~~~~l~~~~~ 277 (306)
.|..+..++.
T Consensus 255 Yy~~l~~~lg 264 (700)
T KOG1156|consen 255 YYEGLEKALG 264 (700)
T ss_pred HHHHHHHHHH
Confidence 5555555553
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.04 E-value=7.3e-07 Score=69.35 Aligned_cols=261 Identities=11% Similarity=0.004 Sum_probs=187.0
Q ss_pred hhhhcCChHHHHhhhhhccCcchHHHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCC------------hhh--HHH
Q 046638 5 TYSRCDSSLDFQNVYSSVRTRNQISWNAI---IAGFCNLGSGEQALKCFSEMRQAGIDID------------YFT--ITS 67 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~--~~~ 67 (306)
.|...|+-..|+.=+.++.+.-+..+.+- ...+.++|.+++|..=|+..++....-. ... ...
T Consensus 81 ~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ 160 (504)
T KOG0624|consen 81 VYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQ 160 (504)
T ss_pred HHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHH
Confidence 34445555555555555433222222222 2457899999999999999988642111 111 222
Q ss_pred HHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcC---cCCchhHHHHHHHHHhcCCH
Q 046638 68 IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD---ERDLVSWNSLLLGCAHHGYS 144 (306)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 144 (306)
.+..+...|+...|+.....+++..+ -|...+..-..+|...|++..|+.-++... +.+..++.-+-..+...|+.
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhH
Confidence 33445678899999999999998753 488888889999999999999998877665 35667777788888999999
Q ss_pred HHHHHHHHHHHhcCCCccHHHHH----HH---------HHHHHccCChHHHHHHHHHHHhcCCC-CCCcHhHHHHHHHHH
Q 046638 145 REAVQLFEQMQKTEIKPDGTTFL----VV---------LSACCHAGFIDKGLQYFYLMRNDASL-EPPRAEHYTAIVGLL 210 (306)
Q Consensus 145 ~~a~~~~~~m~~~~~~p~~~~~~----~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~l~~~~ 210 (306)
+.++...++..+. .||...+. .+ +......++|.++++..+...+.... .+-....+..+-.++
T Consensus 240 ~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 240 ENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence 9999999999775 45543221 11 12334567888888888777765533 222345566777888
Q ss_pred hccCChHHHHHHHHHhcCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHH
Q 046638 211 GRAGFLNEAESFINSMSRN-PG-PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAI 268 (306)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 268 (306)
...|++.+|++...+...- |+ +.++.--..+|.....++.|+.-|+.+.+.+|++..+
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 8899999999999998863 44 6778778888999999999999999999998876553
No 98
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=2.9e-07 Score=68.97 Aligned_cols=135 Identities=14% Similarity=0.049 Sum_probs=68.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhc----
Q 046638 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGR---- 212 (306)
Q Consensus 137 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 212 (306)
.|+..|++++|++...... +......=+..+.+..+++.|.+.+++|.+-. +..+.+.|.+++.+
T Consensus 117 i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-----ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID-----EDATLTQLAQAWVKLATG 185 (299)
T ss_pred HhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----hHHHHHHHHHHHHHHhcc
Confidence 4555555666555554411 11122222334445555555555555555321 33444444444433
Q ss_pred cCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCCh
Q 046638 213 AGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCW 282 (306)
Q Consensus 213 ~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 282 (306)
.+.+..|.-+|+++..+ |++.+.+....++...|++++|..+++.++...++++.+...++.+-...|.-
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 23455555566665553 55555555555555556666666666666665555555555555555555544
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.01 E-value=1.3e-07 Score=83.00 Aligned_cols=143 Identities=13% Similarity=0.067 Sum_probs=112.9
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHH
Q 046638 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205 (306)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 205 (306)
.++..+-.|.....+.|++++|..+++...+..+. +......+..++.+.+++++|...+++..... |.+......
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~---p~~~~~~~~ 159 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG---SSSAREILL 159 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC---CCCHHHHHH
Confidence 45778888888888999999999999988776433 45566778888889999999999988888654 557788888
Q ss_pred HHHHHhccCChHHHHHHHHHhcCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHH
Q 046638 206 IVGLLGRAGFLNEAESFINSMSRN-PG-PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLL 272 (306)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 272 (306)
+..++.+.|++++|..+|+++... |+ ...+..+...+...|+.++|...|+++++...+-...|+.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 888999999999999999988853 44 56788888888889999999999999988544444444443
No 100
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=4.1e-08 Score=83.03 Aligned_cols=211 Identities=10% Similarity=-0.025 Sum_probs=159.6
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CCchhHHHHHHHHHhcCC
Q 046638 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RDLVSWNSLLLGCAHHGY 143 (306)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 143 (306)
..+...+...|-...|..++++.. .|..++.+|...|+..+|..+..+..+ ||...|..+++......-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 345556666777777777776543 456678888888988888888776654 677788888877777667
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHH
Q 046638 144 SREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFI 223 (306)
Q Consensus 144 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (306)
+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+.+. ....+|..+.-+..+.+++..|.+.|
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np---lq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP---LQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc---cchhHHHhccHHHHHHhhhHHHHHHH
Confidence 78888887764321 112222333457889999888887766553 46678888888889999999999999
Q ss_pred HHhcC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 224 NSMSR-NPG-PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 224 ~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
..... .|+ ...|+++-.+|.+.++-.+|...++++++.+-.+..++-...-...+.|.+++|++.+.++...
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 88775 344 5679999999999999999999999999977667778888888888999999999998887643
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.99 E-value=5.7e-07 Score=80.13 Aligned_cols=229 Identities=7% Similarity=0.011 Sum_probs=139.0
Q ss_pred CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH-HHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHH
Q 046638 24 TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI-TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR 102 (306)
Q Consensus 24 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (306)
+.+...|..|+..+...+++++|.++.+...+. .|+...+ ..+...+.+.++.+.+.-+ .+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------ 91 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID------------ 91 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh------------
Confidence 346778899999999999999999999977774 4655433 3333355566665555444 2222
Q ss_pred HHHHHHhcCChHHHHHHHHhcCc--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChH
Q 046638 103 LVFMYAICGAINDANKVFSSMDE--RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFID 180 (306)
Q Consensus 103 l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 180 (306)
......++.-+..++..+.. .+..++..++.+|-+.|+.++|..+|+++.+..+. |....+.+...|+.. +++
T Consensus 92 ---~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 ---SFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred ---hcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 22222223222222222222 23335666777777777777777777777776633 666777777777777 777
Q ss_pred HHHHHHHHHHhcCCCCCCcHhHHHHHHHH---H--hccCChHHHHHHHHHhcCC----CChhhHHHHHHHHHhcCCHHHH
Q 046638 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGL---L--GRAGFLNEAESFINSMSRN----PGPSVYKALLSACQVHGNREIA 251 (306)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~---~--~~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a 251 (306)
+|.+++.+...... +..-|+.+... + ....+++.-.++.+.+... .-..++-.+-..|...++++++
T Consensus 167 KA~~m~~KAV~~~i----~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 167 KAITYLKKAIYRFI----KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HHHHHHHHHHHHHH----hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 77777766654321 11111111110 1 1122333333333443332 2233445555667788899999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHh
Q 046638 252 VRSAKRVLDLWPNDPAIYVLLSNVSK 277 (306)
Q Consensus 252 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 277 (306)
..+++.+++..|.+..+..-++.+|.
T Consensus 243 i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 99999999999998888888888887
No 102
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=2.4e-07 Score=78.60 Aligned_cols=189 Identities=14% Similarity=0.107 Sum_probs=157.6
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 046638 93 YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA 172 (306)
Q Consensus 93 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 172 (306)
.+|-...-..+...+...|-...|..+|++.. .|.-.+.+|+..|+..+|..+..+..+ -+|+...|..+++.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 34445555678889999999999999999875 567788999999999999999988877 36788899999988
Q ss_pred HHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHH
Q 046638 173 CCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREI 250 (306)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 250 (306)
.....-+++|.++.+.... .+-..+.....+.++++++.+.|+.-.+ .....+|-....+..+.++++.
T Consensus 467 ~~d~s~yEkawElsn~~sa---------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISA---------RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred ccChHHHHHHHHHhhhhhH---------HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 8888888899888876532 2223344444457999999999987765 2556789889999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 046638 251 AVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 251 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 297 (306)
|.+.|.....+.|++...|+.+..+|.+.|+..+|...+++..+-+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999988763
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.98 E-value=1e-07 Score=71.16 Aligned_cols=154 Identities=16% Similarity=0.098 Sum_probs=103.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcC-c--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccC
Q 046638 101 NRLVFMYAICGAINDANKVFSSMD-E--RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177 (306)
Q Consensus 101 ~~l~~~~~~~g~~~~a~~~~~~~~-~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 177 (306)
..+-..+...|+-+....+..... . .|....+.++....+.|++.+|...+++..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 445566666677666666666643 2 233455557777777777777777777776543 346777777777777777
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHH
Q 046638 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSA 255 (306)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 255 (306)
+++.|..-|.+..+-. |.++...+.+...|.-.|+.+.|..++...... .+...-..+.-+....|++++|.++.
T Consensus 149 r~~~Ar~ay~qAl~L~---~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELA---PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhc---cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777766543 335566777777777777777777777766553 24555666666677777777777766
Q ss_pred HHH
Q 046638 256 KRV 258 (306)
Q Consensus 256 ~~~ 258 (306)
.+-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 553
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.96 E-value=1.7e-09 Score=55.11 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=25.6
Q ss_pred CCCccHHHHHHHHHHHHhcCChHHHHHHHHhcC
Q 046638 92 GYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124 (306)
Q Consensus 92 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 124 (306)
|+.||..+|+.||.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667788888888888888888888888877764
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=8.5e-07 Score=80.39 Aligned_cols=222 Identities=10% Similarity=0.075 Sum_probs=171.4
Q ss_pred ChhhHHHHHHHhccccchhhHHHHHHHHHHc-CCC---ccHHHHHHHHHHHHhcCChHHHHHHHHhcCc-CC-chhHHHH
Q 046638 61 DYFTITSIVGAIGVISGFKEGKQMHALIFKI-GYD---SNVFVQNRLVFMYAICGAINDANKVFSSMDE-RD-LVSWNSL 134 (306)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~-~~~~~~l 134 (306)
+...|-..+....+.++.++|.++.++++.. ++. --...|.++++.-..-|.-+...++|+++.+ -| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3456777777888899999999999998864 111 1235777888877777888889999999986 23 3578889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccC
Q 046638 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214 (306)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 214 (306)
...|.+.+.+++|.++|+.|.+. +.-....|...+..+.++++-+.|..++.+..+.-.-. .........++.-.+.|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~-eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ-EHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh-hhHHHHHHHHHHHhhcC
Confidence 99999999999999999999865 33466789999999999999999999999887643221 15566677778888999
Q ss_pred ChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCchH-HHHHHHHHHhhcCChhh
Q 046638 215 FLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDL--WPNDPA-IYVLLSNVSKATDCWDD 284 (306)
Q Consensus 215 ~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~-~~~~l~~~~~~~g~~~~ 284 (306)
+.+++..+|+..... .-...|+..++.-.++|+.+.+..+|++++.+ .|.... .|...+..-...|+-+.
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 999999999988763 34567999999999999999999999999983 443433 44555555555565443
No 106
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.95 E-value=4.1e-06 Score=70.44 Aligned_cols=279 Identities=11% Similarity=0.068 Sum_probs=185.0
Q ss_pred chhhhhhcCChHHHHhhhhhccCcc-------hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----------C---
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRTRN-------QISWNAIIAGFCNLGSGEQALKCFSEMRQAGID-----------I--- 60 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----------~--- 60 (306)
+.+.|-..|+++.|+.+|++..+.+ ..+|......=.+..+++.|+++++......-. +
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 4578889999999999999975432 345666666667788899999988876542111 1
Q ss_pred ---ChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc----CCc-hhHH
Q 046638 61 ---DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE----RDL-VSWN 132 (306)
Q Consensus 61 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~ 132 (306)
+...|...+..-...|-++....+|+.++...+. ++...-.....+-...-++++.++|++-.. |++ ..|+
T Consensus 473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 1233444455555667888888999999887664 344333344445555668999999998764 554 3676
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH--HHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHH
Q 046638 133 SLLLGCAH---HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA--CCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207 (306)
Q Consensus 133 ~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (306)
..+.-+.+ ....+.|..+|++..+ |.+|...-+..++-+ --+.|-...|+.++++....-... .....|+..|
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a-~~l~myni~I 629 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA-QRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH-HHHHHHHHHH
Confidence 66655443 3468999999999998 666654433222222 234588888999999876532211 1345677777
Q ss_pred HHHhccCChHHHHHHHHHhcCC-CChhhH---HHHHHHHHhcCCHHHHHHHHHHHhhc-CCC-chHHHHHHHHHHhhcCC
Q 046638 208 GLLGRAGFLNEAESFINSMSRN-PGPSVY---KALLSACQVHGNREIAVRSAKRVLDL-WPN-DPAIYVLLSNVSKATDC 281 (306)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~ 281 (306)
.--...--+.....+|++.++. |+...- ......-.+.|..+.|..+|...-+. +|. ++..|...-..-.+.|+
T Consensus 630 ~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 630 KKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 6555444555666777777664 554432 33344457789999999999998885 443 66778888888888888
Q ss_pred hh
Q 046638 282 WD 283 (306)
Q Consensus 282 ~~ 283 (306)
-+
T Consensus 710 ed 711 (835)
T KOG2047|consen 710 ED 711 (835)
T ss_pred HH
Confidence 33
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=5.5e-06 Score=76.97 Aligned_cols=289 Identities=11% Similarity=-0.045 Sum_probs=184.9
Q ss_pred hhhcCChHHHHhhhhhccC----cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------CCh--hhHHHHHHHhc
Q 046638 6 YSRCDSSLDFQNVYSSVRT----RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID------IDY--FTITSIVGAIG 73 (306)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~~--~~~~~l~~~~~ 73 (306)
....|+++.+..+++.++. .++.........+...|++++|..++....+.--. +.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445677777777766632 12223334445566789999999999877543111 111 11122233456
Q ss_pred cccchhhHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCChHHHHHHHHhcCc-------C--CchhHHHHHHHHHh
Q 046638 74 VISGFKEGKQMHALIFKIGYDSN----VFVQNRLVFMYAICGAINDANKVFSSMDE-------R--DLVSWNSLLLGCAH 140 (306)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~ 140 (306)
..|++++|...++...+.-...+ ....+.+...+...|++++|...+++... + ...+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78999999999998876422222 23456677778889999999999888763 1 12345566777889
Q ss_pred cCCHHHHHHHHHHHHhc----CCC--c-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC--CCCcHhHHHHHHHHHh
Q 046638 141 HGYSREAVQLFEQMQKT----EIK--P-DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL--EPPRAEHYTAIVGLLG 211 (306)
Q Consensus 141 ~~~~~~a~~~~~~m~~~----~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~ 211 (306)
.|++++|...+++.... +.. | ....+..+...+...|++++|...+.+....... .......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998886542 211 1 2233445566777889999999998876542111 1112444555677888
Q ss_pred ccCChHHHHHHHHHhcC---C-CChhhHH-----HHHHHHHhcCCHHHHHHHHHHHhhcCCCchH----HHHHHHHHHhh
Q 046638 212 RAGFLNEAESFINSMSR---N-PGPSVYK-----ALLSACQVHGNREIAVRSAKRVLDLWPNDPA----IYVLLSNVSKA 278 (306)
Q Consensus 212 ~~~~~~~a~~~~~~~~~---~-~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~ 278 (306)
..|++++|.+.+++... . .....+. ..+..+...|+.+.|...+.......+.... ....++.++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 89999999998887743 1 1111111 1123345688999999988776653222221 24577888999
Q ss_pred cCChhhHHHHHHHHhh
Q 046638 279 TDCWDDAGDIRTLMYN 294 (306)
Q Consensus 279 ~g~~~~a~~~~~~m~~ 294 (306)
.|++++|...+++...
T Consensus 704 ~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 704 LGQFDEAEIILEELNE 719 (903)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 108
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.94 E-value=1.3e-06 Score=74.66 Aligned_cols=251 Identities=12% Similarity=0.038 Sum_probs=175.2
Q ss_pred HHHHhhhhhc---cCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHH
Q 046638 13 LDFQNVYSSV---RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89 (306)
Q Consensus 13 ~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 89 (306)
.++.+.+++. ...|+.+-.-+.--|+..++.+.|.+..++..+.+..-+...|..+...+...+++..|+.+.+...
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3455555554 2334443333445588899999999999999998667788999999999999999999999988776
Q ss_pred HcCCC-------------------ccHHHHHHHHHHHHh------cC-----------------ChHHHHHHHHhcCc--
Q 046638 90 KIGYD-------------------SNVFVQNRLVFMYAI------CG-----------------AINDANKVFSSMDE-- 125 (306)
Q Consensus 90 ~~~~~-------------------~~~~~~~~l~~~~~~------~g-----------------~~~~a~~~~~~~~~-- 125 (306)
..-.. ....|+..++..+-. .| +..+|.+....+..
T Consensus 541 ~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 541 EEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred HHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 53211 001122222222110 00 11111111111100
Q ss_pred ---------------------CC------chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCC
Q 046638 126 ---------------------RD------LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178 (306)
Q Consensus 126 ---------------------~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 178 (306)
|+ ...|......+.+.+..++|...+.+.....+ -....|......+...|+
T Consensus 621 a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 621 ASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred HhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHh
Confidence 11 11355666778888899999888888765532 255667777788889999
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHH--HHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHH
Q 046638 179 IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAES--FINSMSR--NPGPSVYKALLSACQVHGNREIAVRS 254 (306)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 254 (306)
+++|.+.|.....- .|.++.+..++..++.+.|+..-|.. ++..+.+ ..+...|-.+...+.+.|+.+.|.++
T Consensus 700 ~~EA~~af~~Al~l---dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 700 LEEAKEAFLVALAL---DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred hHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHH
Confidence 99999999888753 46688889999999999998888877 8888876 35678899999999999999999999
Q ss_pred HHHHhhcCCCchH
Q 046638 255 AKRVLDLWPNDPA 267 (306)
Q Consensus 255 ~~~~~~~~p~~~~ 267 (306)
|..+.++.+.+|.
T Consensus 777 f~aa~qLe~S~PV 789 (799)
T KOG4162|consen 777 FQAALQLEESNPV 789 (799)
T ss_pred HHHHHhhccCCCc
Confidence 9999997776553
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.94 E-value=2.7e-08 Score=70.23 Aligned_cols=107 Identities=11% Similarity=-0.144 Sum_probs=91.7
Q ss_pred HHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 046638 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDL 261 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 261 (306)
.++++..+. ++..+..+...+...|++++|...|+..... .+...|..+..++...|++++|...|++++..
T Consensus 14 ~~~~~al~~------~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV------DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 455555542 2334667788999999999999999998763 46678889999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 262 WPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 262 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
+|+++.++..++.++...|+.++|+..|+...+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999987643
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.93 E-value=1.1e-06 Score=77.35 Aligned_cols=143 Identities=13% Similarity=0.110 Sum_probs=120.9
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--CC-chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH
Q 046638 93 YDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--RD-LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV 169 (306)
Q Consensus 93 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 169 (306)
...+...+..|.....+.|+.++|..+++...+ || ......++.++.+.+++++|+..+++.....+. +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 455788999999999999999999999999985 54 457788899999999999999999999887654 56667788
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHH
Q 046638 170 LSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALL 239 (306)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~ 239 (306)
..++.+.|++++|..+|+++...+ |.+..++..+..++...|+.++|...|++..+. +...-|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~---p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH---PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 889999999999999999999744 346888999999999999999999999999873 5555555443
No 111
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.7e-05 Score=66.12 Aligned_cols=279 Identities=14% Similarity=0.155 Sum_probs=155.2
Q ss_pred hhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---------------------------
Q 046638 7 SRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGID--------------------------- 59 (306)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------- 59 (306)
.+.++.|+|...++.....+..+...-...+.+.|++++|+++|+.+.+++..
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 46778888888888555555556666667788899999999999888654321
Q ss_pred CChhhHHHHHH---HhccccchhhHHHHHHHHHHcC--------CC-cc----H-HHHHHHHHHHHhcCChHHHHHHHHh
Q 046638 60 IDYFTITSIVG---AIGVISGFKEGKQMHALIFKIG--------YD-SN----V-FVQNRLVFMYAICGAINDANKVFSS 122 (306)
Q Consensus 60 ~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~--------~~-~~----~-~~~~~l~~~~~~~g~~~~a~~~~~~ 122 (306)
....+|..+.+ .+...|++.+|+++++...+.+ .. -+ . .....|..++-..|+..+|.+++..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 01224444443 3456789999999998883221 11 00 1 1223455667788999999998887
Q ss_pred cCc---CCch----hH-----------------------------------------------HHHHHHHHh--------
Q 046638 123 MDE---RDLV----SW-----------------------------------------------NSLLLGCAH-------- 140 (306)
Q Consensus 123 ~~~---~~~~----~~-----------------------------------------------~~l~~~~~~-------- 140 (306)
..+ +|.. .- +.++..|..
T Consensus 250 ~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 250 IIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 653 1110 00 011111110
Q ss_pred ------------------------cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHH--------H
Q 046638 141 ------------------------HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY--------L 188 (306)
Q Consensus 141 ------------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~ 188 (306)
...+..+.+++...-+..+.-........+......|+++.|.+++. .
T Consensus 330 ~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 330 SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 01122233333322222111112223334444556667777766666 3
Q ss_pred HHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-----CCChh----hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 046638 189 MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-----NPGPS----VYKALLSACQVHGNREIAVRSAKRVL 259 (306)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (306)
+.+... .+.+...+...+.+.++-+.|..++.+... .+... ++.-+...-.+.|+-++|...++++.
T Consensus 410 ~~~~~~----~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 410 ILEAKH----LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhhhcc----ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 332221 334455556666666665555555555443 02222 22333333455688888888888888
Q ss_pred hcCCCchHHHHHHHHHHhhcCChhhHHHHHH
Q 046638 260 DLWPNDPAIYVLLSNVSKATDCWDDAGDIRT 290 (306)
Q Consensus 260 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 290 (306)
+.+|++..+...++.+|++.. .+.|..+-+
T Consensus 486 k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 486 KFNPNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred HhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 888888888888888887764 566666543
No 112
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=4.1e-06 Score=65.62 Aligned_cols=283 Identities=12% Similarity=0.038 Sum_probs=173.3
Q ss_pred hhhhhhcCChHHHHhhhhhccC--cchHHHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHhccccc-
Q 046638 3 ILTYSRCDSSLDFQNVYSSVRT--RNQISWNAII-AGFCNLGSGEQALKCFSEMRQAGIDIDY-FTITSIVGAIGVISG- 77 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~- 77 (306)
.++.-..-.+++|++++.++.. |+-...|.-+ -+|.+..-++-+.+++.-.++. + ||+ ...+.......+.=+
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~-pdStiA~NLkacn~fRl~ng 235 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-F-PDSTIAKNLKACNLFRLING 235 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-C-CCcHHHHHHHHHHHhhhhcc
Confidence 3344444567889999988754 4444555433 4567777788888888777664 2 443 333333322222111
Q ss_pred ----------------------------------hhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhc
Q 046638 78 ----------------------------------FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123 (306)
Q Consensus 78 ----------------------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 123 (306)
-+.|++++--+.+. -+.+...|+-.|.+.+++.+|..+.+++
T Consensus 236 r~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl 311 (557)
T KOG3785|consen 236 RTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDL 311 (557)
T ss_pred chhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhc
Confidence 12222222222211 1234445677788899999999998888
Q ss_pred CcCCchhHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHccCChHHHHHHHHHHHhcCCC
Q 046638 124 DERDLVSWNSLLLGCAHHG-------YSREAVQLFEQMQKTEIKPDGT-TFLVVLSACCHAGFIDKGLQYFYLMRNDASL 195 (306)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 195 (306)
...++.-|-.-.-.+...| ...-|...|+-.-..+..-|.. --.++..++.-..++++.+.++..++.-..
T Consensus 312 ~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~- 390 (557)
T KOG3785|consen 312 DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT- 390 (557)
T ss_pred CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 7544333322222233333 3455666666554444433322 234566666677788888888888776432
Q ss_pred CCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHH-HHHHHhcCCHHHHHHHHHHHhhcCCC-chHHHHH
Q 046638 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKAL-LSACQVHGNREIAVRSAKRVLDLWPN-DPAIYVL 271 (306)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~ 271 (306)
. +...-..+.++++..|.+.+|+++|-++... .+..+|.++ ...|.+.+.++.|++++-++ ..|. .......
T Consensus 391 -N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLql 466 (557)
T KOG3785|consen 391 -N-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQL 466 (557)
T ss_pred -C-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHH
Confidence 2 3334456889999999999999999888763 466666654 45688899999888776543 3333 3344556
Q ss_pred HHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 272 LSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 272 l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
++.-|.+++.+--|-+.|+.+...+
T Consensus 467 IAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 467 IANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHccC
Confidence 6778888999988999998887643
No 113
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=9.3e-08 Score=72.80 Aligned_cols=195 Identities=16% Similarity=0.143 Sum_probs=138.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHH-HHHHHHHc
Q 046638 100 QNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL-VVLSACCH 175 (306)
Q Consensus 100 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~ 175 (306)
+.+.+.-+.+..++++|++++..-.+ ++....+.|..+|....++..|-..|+++... .|...-|. .-...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 33444445666777777777665543 24556677777888888888888888887654 34444442 22455667
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHH----HHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHH
Q 046638 176 AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV----GLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251 (306)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (306)
.+.+..|+++...|.+. ....+..+ ...-..+++..+..+.++.....+..+.+.......+.|+++.|
T Consensus 91 A~i~ADALrV~~~~~D~-------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN-------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred hcccHHHHHHHHHhcCC-------HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHH
Confidence 78888888888877642 12222222 22345788889999999988656666666667677899999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCCC
Q 046638 252 VRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGY 303 (306)
Q Consensus 252 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 303 (306)
.+-|+.+.+...-++..-..++-+..+.|+++.|+++..++.++|++..|..
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 9999999996554555666677788888999999999999999999877754
No 114
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.8e-06 Score=70.89 Aligned_cols=237 Identities=11% Similarity=-0.000 Sum_probs=169.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHH-------
Q 046638 30 WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR------- 102 (306)
Q Consensus 30 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 102 (306)
...+.++..+..++..|++.+....+.. -+..-++....++...|.+......-....+.|-. ...-++.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 5567788888899999999999888854 44455566666888888888888877777776633 2222332
Q ss_pred HHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHH
Q 046638 103 LVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKG 182 (306)
Q Consensus 103 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 182 (306)
+...|.+.++++.++..|++...+... -....+....++++.......-.++.. ..-...-...+.+.|++..|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHH
Confidence 344666678889999998886542111 122334445566666655554333332 12223337788899999999
Q ss_pred HHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-P-GPSVYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
.+.|.++.... |.|...|....-+|.+.|.+..|+.-.+...+. | ....|..=..++....++++|.+.|++.++
T Consensus 378 v~~YteAIkr~---P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 378 VKHYTEAIKRD---PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHhcC---CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988766 668999999999999999999999988877763 3 344566566667778899999999999999
Q ss_pred cCCCchHHHHHHHHHHhh
Q 046638 261 LWPNDPAIYVLLSNVSKA 278 (306)
Q Consensus 261 ~~p~~~~~~~~l~~~~~~ 278 (306)
.+|++......+.++...
T Consensus 455 ~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred cCchhHHHHHHHHHHHHH
Confidence 999887777777666664
No 115
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=3.3e-06 Score=62.96 Aligned_cols=190 Identities=13% Similarity=0.118 Sum_probs=130.6
Q ss_pred cchhhHHHHHHHHHH---cC-CCccHH-HHHHHHHHHHhcCChHHHHHHHHhcCc--CCc-hhHHHHHHHHHhcCCHHHH
Q 046638 76 SGFKEGKQMHALIFK---IG-YDSNVF-VQNRLVFMYAICGAINDANKVFSSMDE--RDL-VSWNSLLLGCAHHGYSREA 147 (306)
Q Consensus 76 ~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a 147 (306)
.+.++..+++.+++. .| ..++.. .|..++-+....|+.+.|...++++.. |.. .+-..-.--+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 445555555555542 22 344443 344455566677888888888877664 221 1111122234567899999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhc
Q 046638 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 148 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (306)
+++|+.+.+.++. |.+++-.-+...-..|+.-+|++-+....+.. +.|...|.-+...|...|++++|.-.++++.
T Consensus 106 ~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F---~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 106 IEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKF---MNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999888743 66777766667777888888888888877655 3489999999999999999999999999986
Q ss_pred C-CCCh-hhHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCchHHH
Q 046638 228 R-NPGP-SVYKALLSACQV---HGNREIAVRSAKRVLDLWPNDPAIY 269 (306)
Q Consensus 228 ~-~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~ 269 (306)
- .|.. ..+..+...+.- ..+.+.+.++|.+++++.|.+...+
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 5 3544 445556655433 4467889999999999999654443
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.87 E-value=7.2e-08 Score=67.56 Aligned_cols=113 Identities=12% Similarity=0.145 Sum_probs=68.8
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC
Q 046638 150 LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229 (306)
Q Consensus 150 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (306)
.+++.....+. +......+...+...|++++|.+.++.+...+ |.+...+..+...+...|++++|...+++....
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD---PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444443222 23344555666666777777777776665533 345666666777777777777777777666442
Q ss_pred --CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch
Q 046638 230 --PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDP 266 (306)
Q Consensus 230 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 266 (306)
.+...+..+...+...|++++|...|+++++..|++.
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 3345555566666677777777777777777666553
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.1e-06 Score=65.92 Aligned_cols=215 Identities=11% Similarity=0.036 Sum_probs=147.9
Q ss_pred hccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHH-
Q 046638 72 IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQL- 150 (306)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~- 150 (306)
+.-.|++..++..-....... .+...-..+...|...|.+....+-...-..+.......+......-++.+.-+.-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHH
Confidence 344566666655444433221 23344444556677777766555444444444555555555555555555554443
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCC
Q 046638 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNP 230 (306)
Q Consensus 151 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (306)
.+.+.......+......-...|++.|++++|++..+... +..+...=+..+.+..+++-|.+.+++|..-.
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4444444334343444455667899999999999887621 55556666777889999999999999999766
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 231 GPSVYKALLSACQV----HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 231 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
+..+.+.|..++.+ .+++..|.-+|+++-+..|+++.+.+-.+.++...|++++|..++++...+.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 77788877777654 4678999999999999877789999999999999999999999999887543
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.85 E-value=4.6e-06 Score=62.59 Aligned_cols=159 Identities=11% Similarity=0.011 Sum_probs=130.5
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcC
Q 046638 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHG 142 (306)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 142 (306)
..+-..+...|+-+....+........ +.|....+.++....+.|++..|...|++... +|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 556667777888888888777755443 34677778899999999999999999999875 57889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHH
Q 046638 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESF 222 (306)
Q Consensus 143 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (306)
++++|..-|.+..+..+. +...++.+.-.+.-.|+.+.|..++........ .+..+-..+.......|++++|..+
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~---ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA---ADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC---CchHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999998876443 456678888889999999999999988876542 3777888999999999999999998
Q ss_pred HHHhcCC
Q 046638 223 INSMSRN 229 (306)
Q Consensus 223 ~~~~~~~ 229 (306)
...-...
T Consensus 225 ~~~e~~~ 231 (257)
T COG5010 225 AVQELLS 231 (257)
T ss_pred ccccccc
Confidence 8766544
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.85 E-value=7.4e-07 Score=79.42 Aligned_cols=203 Identities=9% Similarity=-0.000 Sum_probs=153.8
Q ss_pred ChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHh
Q 046638 61 DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140 (306)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 140 (306)
+...+..|+..+...+++++|.++.+...+..+. ....|..++..+.+.++.+++..+ .++.....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 4567888999999999999999999988876533 445555566678887876665544 34555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHH
Q 046638 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220 (306)
Q Consensus 141 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (306)
..++.-...+...|...+ -+...+..+..+|-+.|+.++|..+|+++.+.. |.++.+.|.++..|... ++++|.
T Consensus 96 ~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 96 NLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-hHHHHH
Confidence 666755555566665543 244577889999999999999999999999765 56999999999999999 999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHH--------------------HHHHHHHHhhcC
Q 046638 221 SFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAI--------------------YVLLSNVSKATD 280 (306)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--------------------~~~l~~~~~~~g 280 (306)
+++.+.... +...+++..+.++|.++....|++... +..+-..|...+
T Consensus 170 ~m~~KAV~~------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~ 237 (906)
T PRK14720 170 TYLKKAIYR------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALE 237 (906)
T ss_pred HHHHHHHHH------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Confidence 999887642 556667777778888877777765433 333447788889
Q ss_pred ChhhHHHHHHHHhhc
Q 046638 281 CWDDAGDIRTLMYNR 295 (306)
Q Consensus 281 ~~~~a~~~~~~m~~~ 295 (306)
+|+++..+++.+.+.
T Consensus 238 ~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 238 DWDEVIYILKKILEH 252 (906)
T ss_pred hhhHHHHHHHHHHhc
Confidence 999999999988764
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=1.4e-06 Score=70.90 Aligned_cols=119 Identities=21% Similarity=0.115 Sum_probs=100.5
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC-hhhHHHHHHHHHhcCCH
Q 046638 171 SACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG-PSVYKALLSACQVHGNR 248 (306)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~ 248 (306)
-.+...|+.+.|+..++.+.... |.|+..+....+.+.+.|+.++|.+.++++... |+ ....-.+..+|.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~---P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ---PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh
Confidence 35567899999999999988755 557887888889999999999999999999874 66 45567788889999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHH
Q 046638 249 EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLM 292 (306)
Q Consensus 249 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 292 (306)
.+|+.+++......|+++..|..|+.+|...|+..++....-+.
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 99999999999999999999999999999888887777665544
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.83 E-value=6.5e-09 Score=52.99 Aligned_cols=32 Identities=28% Similarity=0.571 Sum_probs=17.5
Q ss_pred CCCccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046638 158 EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189 (306)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (306)
|+.||..||+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.82 E-value=2.7e-07 Score=64.68 Aligned_cols=99 Identities=19% Similarity=0.162 Sum_probs=69.8
Q ss_pred CCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 046638 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSN 274 (306)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 274 (306)
|.+......++..+...|++++|.+.|+.+.. . .+...+..+...+...|++++|..+++++++..|+++..+..++.
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 93 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAE 93 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 33555566667777777777777777777654 2 344566667777777777777777777777777777777777777
Q ss_pred HHhhcCChhhHHHHHHHHhhc
Q 046638 275 VSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~ 295 (306)
++...|++++|...|++..+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777766654
No 123
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.3e-05 Score=66.76 Aligned_cols=124 Identities=12% Similarity=0.032 Sum_probs=88.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhH
Q 046638 131 WNSLLLGCAHHGYSREAVQLFE--------QMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEH 202 (306)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (306)
--+++......|+++.|.+++. .+.+.+..|. +...++..+.+.++-+.|..+++..........+....
T Consensus 379 ~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~ 456 (652)
T KOG2376|consen 379 LLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIA 456 (652)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchH
Confidence 4456677788999999999999 6666666664 44557778888888899999999876543221112222
Q ss_pred HH----HHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 046638 203 YT----AIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKR 257 (306)
Q Consensus 203 ~~----~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (306)
.. ..+..-.+.|+.++|..+++++.. +++..+...++.+|++. +++.|..+-+.
T Consensus 457 l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 457 LLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 23 333344567999999999999987 36778888899998877 56777665443
No 124
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.79 E-value=3.1e-07 Score=64.06 Aligned_cols=97 Identities=11% Similarity=-0.050 Sum_probs=82.4
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 276 (306)
+....-.+...+...|++++|..+|+-+.. ..+..-|-.|...+...|++++|+..|..+..+.|+++..+..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 445556677778889999999999998765 245566778888889999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHhhc
Q 046638 277 KATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~ 295 (306)
...|+.+.|++.|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999877654
No 125
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=3.3e-06 Score=73.03 Aligned_cols=231 Identities=13% Similarity=0.103 Sum_probs=153.0
Q ss_pred hhhhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C--------CCCChhhHHHHHHHhcc
Q 046638 4 LTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-G--------IDIDYFTITSIVGAIGV 74 (306)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~~~~~ 74 (306)
+.|..-|++|.|.+-.+.+. +...|..+.+.|.+.++.+-|.-.+-.|... | -.|+ .+=..+.-...+
T Consensus 736 SfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 46778899999877776654 4567888999999988888887777665431 1 1222 222222333457
Q ss_pred ccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc-CCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 046638 75 ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-RDLVSWNSLLLGCAHHGYSREAVQLFEQ 153 (306)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 153 (306)
.|.+++|+.+|.+-+..+ .|=..|...|.+++|.++-+.--. +-..||......+-..++.+.|++.|++
T Consensus 813 LgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 899999999998877643 344667888999999888765433 2234677777777778888888888875
Q ss_pred HH----------hcCC---------CccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccC
Q 046638 154 MQ----------KTEI---------KPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214 (306)
Q Consensus 154 m~----------~~~~---------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 214 (306)
.. ...+ ..|...|.--...+-..|+.+.|+.+|...++ |..++...|-.|
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----------YFSMVRIKCIQG 952 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----------hhhheeeEeecc
Confidence 32 1111 11233333344444566777777777766542 455666677778
Q ss_pred ChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 215 FLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
+.++|-++-++-. |....-.+.+.|-..|++.+|..+|.++..
T Consensus 953 k~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 953 KTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred CchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 8888877766644 445555677778888888888888877654
No 126
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.77 E-value=6.8e-07 Score=63.32 Aligned_cols=125 Identities=18% Similarity=0.102 Sum_probs=73.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CChh----hHHHHH
Q 046638 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PGPS----VYKALL 239 (306)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~----~~~~l~ 239 (306)
.|..++..+ ..++...+...++.+....+..+........+...+...|++++|...|+.+... |+.. ....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444443 3666666666666666655432222344444556666777777777777776653 3321 233355
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHH
Q 046638 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTL 291 (306)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 291 (306)
..+...|++++|+..++.. ...+-.+..+...+.++.+.|++++|+..|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5566777777777777553 22223455666777777777777777777754
No 127
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.75 E-value=3.2e-06 Score=72.39 Aligned_cols=166 Identities=12% Similarity=0.111 Sum_probs=86.3
Q ss_pred HHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHH
Q 046638 69 VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAV 148 (306)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 148 (306)
+.+......|.+|+.+++.+..... ....|..+..-|+..|+++.|.++|-+.- .++-.|..|.+.|+|++|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 3344455666677776666655432 23345556666777777777777765543 3344566677777777777
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 149 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
.+-.+. .|+......|..-..-+-+.|++.+|.++|-.+. .|+. -|++|-+.|..+..+++.++-..
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~------~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG------EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc------CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 666554 3444444555555555556666666665543221 1122 34555555555555555544332
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHH
Q 046638 229 NPGPSVYKALLSACQVHGNREIAVRS 254 (306)
Q Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~a~~~ 254 (306)
..-..|...+..-+-..|+...|..-
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHH
Confidence 21122333333334444444444433
No 128
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.73 E-value=5.4e-07 Score=61.49 Aligned_cols=106 Identities=15% Similarity=0.132 Sum_probs=66.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC----hhhHHHHH
Q 046638 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG----PSVYKALL 239 (306)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~----~~~~~~l~ 239 (306)
++..++..+.+.|++++|.+.|..+.......+.....+..++.++.+.|++++|...|+.+... |+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34555666667777777777777766544221212345566777777777777777777766542 33 23455566
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCchHHHH
Q 046638 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYV 270 (306)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 270 (306)
.++...|+.++|...++++++..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 6677777777777777777777776654443
No 129
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.73 E-value=1.9e-06 Score=73.74 Aligned_cols=165 Identities=13% Similarity=0.098 Sum_probs=109.7
Q ss_pred HHHHHhcCChHHHHHHHHhcCcCCch--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHH
Q 046638 104 VFMYAICGAINDANKVFSSMDERDLV--SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDK 181 (306)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 181 (306)
+.+-.....+.+|+.+++.+...++. -|..+...|...|+++.|.++|-+. ..++-.+..|.+.|+|+.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 34455667788888888877765443 3677778888889999998888654 124556778889999988
Q ss_pred HHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 046638 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDL 261 (306)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 261 (306)
|.++-.+..... .....|..-..-+-+.|++.+|.++|-.+.. |+. .|..|-+.|..+..+++.++-..-
T Consensus 810 a~kla~e~~~~e----~t~~~yiakaedldehgkf~eaeqlyiti~~-p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 810 AFKLAEECHGPE----ATISLYIAKAEDLDEHGKFAEAEQLYITIGE-PDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHHHhcCch----hHHHHHHHhHHhHHhhcchhhhhheeEEccC-chH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 888776654211 1445566666667788888888888766553 444 367788888888877776654321
Q ss_pred CCCchHHHHHHHHHHhhcCChhhHHHHH
Q 046638 262 WPNDPAIYVLLSNVSKATDCWDDAGDIR 289 (306)
Q Consensus 262 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 289 (306)
. -..+...++.-+...|+.+.|..-|
T Consensus 880 ~--l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 880 H--LHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred h--hhHHHHHHHHHHHhccChhHHHHHH
Confidence 1 1234555555566666666655544
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.73 E-value=9.7e-07 Score=72.12 Aligned_cols=127 Identities=14% Similarity=0.088 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccC
Q 046638 98 FVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177 (306)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 177 (306)
.....|+..+...++++.|+.+|+++.+.+......++..+...++..+|.+++++.....+. +......-...+.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 344566777788899999999999999877777888999999999999999999999876433 6666777778899999
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
+++.|+++.+++.+.. |.+..+|..|+.+|.+.|+++.|+..+..++.
T Consensus 249 ~~~lAL~iAk~av~ls---P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVELS---PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999998644 56788999999999999999999999998864
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.72 E-value=3.4e-07 Score=74.69 Aligned_cols=121 Identities=9% Similarity=0.037 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 046638 30 WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI 109 (306)
Q Consensus 30 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (306)
-..|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++++.++..+ .+..........+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 3456677777899999999999998864 44 444567777777888899999999987653 367777778888999
Q ss_pred cCChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046638 110 CGAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155 (306)
Q Consensus 110 ~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 155 (306)
.++.+.|+++.+++.+ | +..+|..|..+|.+.|+++.|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999885 5 44599999999999999999999988764
No 132
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=2.6e-05 Score=69.21 Aligned_cols=245 Identities=9% Similarity=0.060 Sum_probs=144.3
Q ss_pred hhhhhcCChHHHHhhhhhcc-------------------------CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 046638 4 LTYSRCDSSLDFQNVYSSVR-------------------------TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI 58 (306)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~-------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 58 (306)
......+-+++|..+|+... ...+..|+.+..+-.+.|.+.+|++-|-+.
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 34455566677777776532 124667899999999999999998776433
Q ss_pred CCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHH
Q 046638 59 DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGC 138 (306)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 138 (306)
-|+..|..++..+.+.|.+++-.+++....+..-+|... ..|+-+|++.+++.+.++++ ..|++.....+..-|
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRC 1204 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHH
Confidence 367789999999999999999999999888876666544 46888899999988766553 345655556666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHH
Q 046638 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218 (306)
Q Consensus 139 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (306)
...|.++.|.-+|... ..|..+...+...|++..|...-++. .+..+|..+-.+|...+.+.-
T Consensus 1205 f~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA--------ns~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA--------NSTKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred hhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc--------cchhHHHHHHHHHhchhhhhH
Confidence 6666666666555432 23445555555555555554432222 134445555555544444433
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhh
Q 046638 219 AESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278 (306)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 278 (306)
|.-.=-.+. ....-...++.-|...|-+++.+.+++..+.+.......|.-|+..|.+
T Consensus 1268 AQiCGL~ii--vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1268 AQICGLNII--VHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHhcCceEE--EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 321100000 1112233344445555555555555555444443334444444444433
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.69 E-value=2e-06 Score=60.96 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHH
Q 046638 141 HGYSREAVQLFEQMQKTEIKP--DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218 (306)
Q Consensus 141 ~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (306)
.++...+...++.+......- .......+...+...|++++|...|+.+................+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 555666665566655543221 112222344555566666666666666555331100011233345555666666666
Q ss_pred HHHHHHHhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 219 AESFINSMSRN-PGPSVYKALLSACQVHGNREIAVRSAKRV 258 (306)
Q Consensus 219 a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (306)
|+..++..... ..+..+......+...|+.++|...|+++
T Consensus 104 Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666554332 22233444555566666666666666554
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=1.5e-05 Score=65.13 Aligned_cols=124 Identities=17% Similarity=0.096 Sum_probs=96.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhcc
Q 046638 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA 213 (306)
Q Consensus 134 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (306)
....+...|++++|+..++.++..-+ -|..........+.+.|+..+|.+.++++.... |........+.++|.+.
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~---P~~~~l~~~~a~all~~ 387 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD---PNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCccHHHHHHHHHHHhc
Confidence 34445677889999999999877633 255666677788899999999999999988655 43466777888999999
Q ss_pred CChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 046638 214 GFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDL 261 (306)
Q Consensus 214 ~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 261 (306)
|++.+|+.+++..... .++..|..|..+|...|+..++.....+....
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 9999999999888763 56778999999999999888877776665553
No 135
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=1.9e-05 Score=68.63 Aligned_cols=244 Identities=10% Similarity=0.027 Sum_probs=160.9
Q ss_pred chhhhhhcCChHHHHhhhhhccC-------------cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRT-------------RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 68 (306)
+.++|.+..++|-|.-.+..|.+ ++ ..=--..-.....|..++|+.+|.+-++.+ .|
T Consensus 763 mA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------Ll 832 (1416)
T KOG3617|consen 763 MASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LL 832 (1416)
T ss_pred HHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HH
Confidence 35667777777777666555532 21 221222333457889999999999887743 23
Q ss_pred HHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc-----------------------
Q 046638 69 VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE----------------------- 125 (306)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------------- 125 (306)
=..|...|.+++|.++-+.--... -..||.....-+-..+|++.|++.|++...
T Consensus 833 NKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 833 NKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRK 909 (1416)
T ss_pred HHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhc
Confidence 345667899999988765432222 235666677777778889999998887642
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHH
Q 046638 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205 (306)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 205 (306)
.|...|.-....+-..|+.+.|+.+|..... |.++++..|-+|+.++|-++-++- + |......
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---g-----d~AAcYh 972 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---G-----DKAACYH 972 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---c-----cHHHHHH
Confidence 2445566666666778888888888877642 567788889999999998876542 2 6667788
Q ss_pred HHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHH---------------HhcCCHHHHHHHHHHHhhcCCCchHHHH
Q 046638 206 IVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC---------------QVHGNREIAVRSAKRVLDLWPNDPAIYV 270 (306)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~---------------~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 270 (306)
|...|-..|++.+|..+|.+... +...|+.| ....+.-.|.++|++. .....
T Consensus 973 laR~YEn~g~v~~Av~FfTrAqa------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~-------g~~~~ 1039 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRAQA------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL-------GGYAH 1039 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHH------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc-------chhhh
Confidence 99999999999999999988753 22222222 2223344444555542 22334
Q ss_pred HHHHHHhhcCChhhHHHH
Q 046638 271 LLSNVSKATDCWDDAGDI 288 (306)
Q Consensus 271 ~l~~~~~~~g~~~~a~~~ 288 (306)
..+..|.+.|.+.+|+++
T Consensus 1040 ~AVmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen 1040 KAVMLYHKAGMIGKALEL 1057 (1416)
T ss_pred HHHHHHHhhcchHHHHHH
Confidence 455677778887777764
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=1.5e-05 Score=59.60 Aligned_cols=180 Identities=13% Similarity=0.131 Sum_probs=136.3
Q ss_pred ChHHHHHHHHhcCc--------CCc-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHccCChHH
Q 046638 112 AINDANKVFSSMDE--------RDL-VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDG-TTFLVVLSACCHAGFIDK 181 (306)
Q Consensus 112 ~~~~a~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~ 181 (306)
+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++...- |.+ ..-..-.-.+-..|++++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhh
Confidence 44555555555542 222 245556667778899999999999987763 332 222222223456799999
Q ss_pred HHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 046638 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVL 259 (306)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (306)
|+++++.+.++. |.|..++..-+-.....|+--+|++-+....+. .|...|.-+...|...|++++|.-++++++
T Consensus 105 A~e~y~~lL~dd---pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD---PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC---cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999866 557778877777788888888998888887764 788899999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHhhcC---ChhhHHHHHHHHhhcC
Q 046638 260 DLWPNDPAIYVLLSNVSKATD---CWDDAGDIRTLMYNRG 296 (306)
Q Consensus 260 ~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~ 296 (306)
-..|-++..+..++..+.-.| +.+-|.++|.+..+.+
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 999999999999998866555 4566788887776543
No 137
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=6.6e-05 Score=59.09 Aligned_cols=161 Identities=12% Similarity=0.058 Sum_probs=65.3
Q ss_pred HHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCh
Q 046638 103 LVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179 (306)
Q Consensus 103 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 179 (306)
+..++...|++++|...+.-+.+ ++...+-.|.-++.-.|.+.+|..+-.+..+ +......++....+.|+-
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcH
Confidence 34445555555555555544432 2333444444444444555555444333211 112222333333344444
Q ss_pred HHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CChhhHHHHHH-HHHhcCCHHHHHHHHHH
Q 046638 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PGPSVYKALLS-ACQVHGNREIAVRSAKR 257 (306)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~-~~~~~~~~~~a~~~~~~ 257 (306)
++-..+.+.+.+. ..--.+|....-..-.+.+|++++.+.... |+-...+..+. .|.+..-++-+.++++-
T Consensus 138 k~~~~fh~~LqD~-------~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 138 KRILTFHSSLQDT-------LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHhhh-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 4444433333221 111122232222233445555555554432 33333332222 23444445555555555
Q ss_pred HhhcCCCchHHHHHHHHH
Q 046638 258 VLDLWPNDPAIYVLLSNV 275 (306)
Q Consensus 258 ~~~~~p~~~~~~~~l~~~ 275 (306)
.++..|+++...+..+..
T Consensus 211 YL~q~pdStiA~NLkacn 228 (557)
T KOG3785|consen 211 YLRQFPDSTIAKNLKACN 228 (557)
T ss_pred HHHhCCCcHHHHHHHHHH
Confidence 555555544444444333
No 138
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.54 E-value=1.5e-06 Score=56.35 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=65.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhcCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcC
Q 046638 203 YTAIVGLLGRAGFLNEAESFINSMSRN-P-GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATD 280 (306)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 280 (306)
+..++..+...|++++|...+++.... | +...+..+...+...+++++|.+.+++.....|.++.++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455666666777777777777776542 2 33456666666777777888888888877777777677777777787888
Q ss_pred ChhhHHHHHHHHhh
Q 046638 281 CWDDAGDIRTLMYN 294 (306)
Q Consensus 281 ~~~~a~~~~~~m~~ 294 (306)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888777776654
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.54 E-value=1.8e-07 Score=48.31 Aligned_cols=34 Identities=41% Similarity=0.773 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 046638 29 SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY 62 (306)
Q Consensus 29 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 62 (306)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888873
No 140
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.53 E-value=2.3e-05 Score=69.34 Aligned_cols=177 Identities=12% Similarity=0.006 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHH
Q 046638 98 FVQNRLVFMYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK-PDGTTFLVVLSAC 173 (306)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~ 173 (306)
..|..|+..|+...+...|.+.|+...+ .|..++......|+...+++.|..+.-..-+.... .-...|....-.|
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 3445555555555555555555555443 23334444555555555555555552211111000 0001111222234
Q ss_pred HccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCChhhHHHHHH--HHHhcCCHHH
Q 046638 174 CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPGPSVYKALLS--ACQVHGNREI 250 (306)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~--~~~~~~~~~~ 250 (306)
.+.++...|...|+...+.. |.|...|..++.+|.++|++..|.++|.+... +|+. .|...-. ..+..|++.+
T Consensus 573 Lea~n~h~aV~~fQsALR~d---PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s-~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD---PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS-KYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC---chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-HHHHHHHHHHHHHhhhHHH
Confidence 44455555555554444322 33555555555555555555555555554443 1222 1221111 1344555555
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHhh
Q 046638 251 AVRSAKRVLDLWPNDPAIYVLLSNVSKA 278 (306)
Q Consensus 251 a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 278 (306)
|...++..+............++..+.+
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 5555555544333222333344444333
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.52 E-value=1.7e-07 Score=59.52 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=48.9
Q ss_pred cCChHHHHHHHHHhcCC-C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHH
Q 046638 213 AGFLNEAESFINSMSRN-P---GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDI 288 (306)
Q Consensus 213 ~~~~~~a~~~~~~~~~~-~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 288 (306)
.|+++.|+.+++++... | +...+..+..++.+.|++++|..++++ .+..|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45667777777766652 3 233344466667777777777777777 555555555666667777777777777777
Q ss_pred HHH
Q 046638 289 RTL 291 (306)
Q Consensus 289 ~~~ 291 (306)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.52 E-value=2.7e-06 Score=57.99 Aligned_cols=96 Identities=19% Similarity=0.165 Sum_probs=82.2
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhcCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hHHHHHH
Q 046638 201 EHYTAIVGLLGRAGFLNEAESFINSMSRN-PG----PSVYKALLSACQVHGNREIAVRSAKRVLDLWPND---PAIYVLL 272 (306)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 272 (306)
.++..++..+.+.|++++|.+.|+++... |+ ...+..+...+...|+++.|...++++....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45677888899999999999999999763 43 2356668888999999999999999999987764 5678899
Q ss_pred HHHHhhcCChhhHHHHHHHHhhcC
Q 046638 273 SNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 273 ~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
+.++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
No 143
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.50 E-value=8e-07 Score=54.08 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=58.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcC-ChhhHHHHHHHHhhc
Q 046638 231 GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATD-CWDDAGDIRTLMYNR 295 (306)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 295 (306)
++..|..+...+...|++++|+..|+++++.+|+++.++..++.++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678888899999999999999999999999999999999999999999 799999999887653
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.49 E-value=3.1e-07 Score=47.40 Aligned_cols=34 Identities=38% Similarity=0.691 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc
Q 046638 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162 (306)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 162 (306)
.+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3689999999999999999999999999998887
No 145
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.49 E-value=1.2e-06 Score=69.75 Aligned_cols=259 Identities=13% Similarity=0.084 Sum_probs=163.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHhccccchhhHHHHHHHHH--H--cCCC-ccHHHHHHHHH
Q 046638 35 AGFCNLGSGEQALKCFSEMRQAGIDIDY----FTITSIVGAIGVISGFKEGKQMHALIF--K--IGYD-SNVFVQNRLVF 105 (306)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~~ 105 (306)
.-+++.|+....+.+|+..++.|. -|. ..|..|.++|.-.+++++|+++...=+ . .|-+ -.......|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 347788888899999988888763 232 445666677777788888887654311 1 1100 01223334555
Q ss_pred HHHhcCChHHHHHHHHhcCc---------CCchhHHHHHHHHHhcCC--------------------HHHHHHHHHHHH-
Q 046638 106 MYAICGAINDANKVFSSMDE---------RDLVSWNSLLLGCAHHGY--------------------SREAVQLFEQMQ- 155 (306)
Q Consensus 106 ~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~- 155 (306)
.+--.|.+++|+-...+-.. ....++..+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 55566777777665443321 122345556666655442 234444444321
Q ss_pred ---hcCCC-ccHHHHHHHHHHHHccCChHHHHHHHHH---HHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 156 ---KTEIK-PDGTTFLVVLSACCHAGFIDKGLQYFYL---MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 156 ---~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
+.|-. .....|..+.+.|.-.|+++.|+...+. +.+..+........+..+.+++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11110 1123466666777778899999887653 1122222223557788999999999999999998886542
Q ss_pred -------C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc------CCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 229 -------N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDL------WPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 229 -------~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
+ ....+.-+|...|.-..++++|+.++.+-+.+ .......++.|+.+|...|..++|+.+.+.-.+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1 33445667888888889999999998876652 112467899999999999999999988765543
No 146
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.49 E-value=5.7e-06 Score=67.75 Aligned_cols=106 Identities=15% Similarity=0.091 Sum_probs=77.9
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCC
Q 046638 170 LSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGN 247 (306)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 247 (306)
...+...|+++.|+..|+++.+.. |.+...|..+..+|...|++++|+..++++... .+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 445567778888888888777644 446777778888888888888888888877652 345567777777888888
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHhh
Q 046638 248 REIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278 (306)
Q Consensus 248 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 278 (306)
+++|+..|++++++.|+++.+...+..+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888888888888877776666555433
No 147
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.47 E-value=0.0002 Score=55.27 Aligned_cols=56 Identities=7% Similarity=-0.041 Sum_probs=29.1
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHH
Q 046638 170 LSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINS 225 (306)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (306)
...|.+.|.+..|..-++.+.+.....+........++.+|...|..++|......
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455555555555555555555444444444455555555555555555554433
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.47 E-value=4e-07 Score=46.64 Aligned_cols=33 Identities=27% Similarity=0.566 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 046638 28 ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI 60 (306)
Q Consensus 28 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 60 (306)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888887766
No 149
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.46 E-value=2.3e-05 Score=69.29 Aligned_cols=179 Identities=12% Similarity=0.005 Sum_probs=110.6
Q ss_pred hHHHHHHHHhcCcCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046638 113 INDANKVFSSMDERDL---VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189 (306)
Q Consensus 113 ~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (306)
...|+..|-+....|+ ..|..|...|+..-+...|...|++..+.+.. +..........|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 5556666555554332 46777777777777777777777777655433 4555666777777777777777764333
Q ss_pred HhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchH
Q 046638 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267 (306)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 267 (306)
.+...... ...-|....-.|.+.++...|..-|+..... .|...|..++.+|...|++..|.++|.++..++|.+..
T Consensus 553 ~qka~a~~-~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 553 AQKAPAFA-CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred hhhchHHH-HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 22211100 1222333455566777777777777766542 34456777777777777777777777777777776655
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 268 IYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 268 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
.-.-.+...+..|.+++|...+..+.
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44555555666777777777666554
No 150
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.44 E-value=0.00062 Score=56.73 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC---C-ChhhHHHHHHHHHhcCCHHHHHHH
Q 046638 179 IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN---P-GPSVYKALLSACQVHGNREIAVRS 254 (306)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~ 254 (306)
.+....+++++.......+ .-+|..+++.-.+..-+..|..+|.+..+. + ++..+++++.-+ ..++.+.|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~--tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL--TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCC--ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHH
Confidence 4444555555554443332 245777888888888899999999999874 3 455666666644 56788999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCC
Q 046638 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKK 300 (306)
Q Consensus 255 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 300 (306)
|+-.++..++++..-...+..+...|+-..++.+|++....++.++
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 9999999999988888889999999999999999999988766543
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.44 E-value=5.5e-07 Score=46.13 Aligned_cols=33 Identities=39% Similarity=0.756 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 046638 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161 (306)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 161 (306)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=3.7e-06 Score=64.39 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=49.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChH
Q 046638 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLN 217 (306)
Q Consensus 138 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (306)
+.+.+++++|+..|.+.++..+. |.+-|..-..+|++.|.++.|.+-.+....-. |-...+|..|..+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD---p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID---PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHccCcHH
Confidence 44555566666666655554332 44444555555666666655555555544322 334455555555565666666
Q ss_pred HHHHHHHHhcC-CCChhhH
Q 046638 218 EAESFINSMSR-NPGPSVY 235 (306)
Q Consensus 218 ~a~~~~~~~~~-~~~~~~~ 235 (306)
+|++.|++.++ .|+-.+|
T Consensus 167 ~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHhhhccCCCcHHH
Confidence 66655555554 2444443
No 153
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.0003 Score=62.88 Aligned_cols=212 Identities=13% Similarity=0.173 Sum_probs=119.2
Q ss_pred cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCC----------
Q 046638 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGY---------- 93 (306)
Q Consensus 25 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------- 93 (306)
.|+..-+.-+.++...+-..+-++++++..-.. .-........|+-.-+-.-+..++.++.+++-..+.
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 466667777888888888888888888875322 111112222222211222233334444444333221
Q ss_pred -------------CccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046638 94 -------------DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIK 160 (306)
Q Consensus 94 -------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 160 (306)
..+..+.+.|+. ..+.++.|.++-++..+| ..|..+..+-.+.|...+|.+-|-+.
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------ 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------ 1130 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------
Confidence 111222222221 123344444444444333 46888888888888888888877543
Q ss_pred ccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHH
Q 046638 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240 (306)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 240 (306)
-|...|.-++....+.|.+++-.+++....+... .+.+-+.|+-+|.+.++..+.++++. -|+......+.+
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~----E~~id~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR----EPYIDSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGD 1202 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc----CccchHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhH
Confidence 2556788888888899999888888876665432 23345678888888888877666542 234444444444
Q ss_pred HHHhcCCHHHHHHHH
Q 046638 241 ACQVHGNREIAVRSA 255 (306)
Q Consensus 241 ~~~~~~~~~~a~~~~ 255 (306)
-|...+.++.|.-+|
T Consensus 1203 rcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHhhhhhhHHHHHHH
Confidence 444444444444333
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.43 E-value=1.6e-06 Score=70.97 Aligned_cols=92 Identities=13% Similarity=-0.001 Sum_probs=81.7
Q ss_pred HHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCCh
Q 046638 205 AIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCW 282 (306)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 282 (306)
..+..+...|++++|++.|++.... .+...|..+..+|...|++++|+..+++++++.|+++..|..++.+|...|++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 3456677889999999999999873 45567888888999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcC
Q 046638 283 DDAGDIRTLMYNRG 296 (306)
Q Consensus 283 ~~a~~~~~~m~~~~ 296 (306)
++|+..|++..+.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999887644
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.43 E-value=1.5e-06 Score=52.11 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=48.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 238 LLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
+...+...|++++|...|+++++..|+++..+..++.++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566788899999999999999988988889999999999999999999998888753
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.41 E-value=0.00019 Score=55.43 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=47.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC---chHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 238 LLSACQVHGNREIAVRSAKRVLDLWPN---DPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
+..-|.+.|.+..|..-++.+++.-|+ .+.....++.+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 455688999999999999999997776 45577888999999999999998877654
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.38 E-value=7.9e-06 Score=52.84 Aligned_cols=92 Identities=21% Similarity=0.192 Sum_probs=40.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcC
Q 046638 169 VLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHG 246 (306)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 246 (306)
+...+...|++++|...++...+.. |.+..++..+...+...+++++|.+.+++.... .+...+..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD---PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3334444444444444444443322 122333444444444444455555444444331 12233444444455555
Q ss_pred CHHHHHHHHHHHhhcCC
Q 046638 247 NREIAVRSAKRVLDLWP 263 (306)
Q Consensus 247 ~~~~a~~~~~~~~~~~p 263 (306)
+++.|...+.+..+..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 55555555555544443
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.37 E-value=3.7e-05 Score=60.82 Aligned_cols=134 Identities=13% Similarity=0.165 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH-HHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHH
Q 046638 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSA-CCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207 (306)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (306)
.+|-.++....+.+..+.|..+|.+.++.+. .+...|...... +...++.+.|.++|+...+... .+...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~---~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP---SDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT---T-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC---CCHHHHHHHH
Confidence 3677888888888889999999999885432 233444444333 3335677779999999887653 4788889999
Q ss_pred HHHhccCChHHHHHHHHHhcCC-CCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch
Q 046638 208 GLLGRAGFLNEAESFINSMSRN-PGP----SVYKALLSACQVHGNREIAVRSAKRVLDLWPNDP 266 (306)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 266 (306)
+.+...|+.+.|..+|++.... +.. ..|...+.--.+.|+.+.+.++.+++.+..|++.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999998875 333 4788888888889999999999999998877643
No 159
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.37 E-value=1.5e-05 Score=55.75 Aligned_cols=97 Identities=9% Similarity=-0.039 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHH
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (306)
+......+...+...|++++|..+|+-+...++ -+..-|-.|..++...|++++|+..|......++. |+..+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 334444555566677777777777777766432 33444555666666677777777777777776643 6666666777
Q ss_pred HHHhcCChHHHHHHHHhcC
Q 046638 106 MYAICGAINDANKVFSSMD 124 (306)
Q Consensus 106 ~~~~~g~~~~a~~~~~~~~ 124 (306)
++...|+.+.|.+.|+...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 7777777777777766554
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.6e-05 Score=62.36 Aligned_cols=267 Identities=12% Similarity=-0.037 Sum_probs=162.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 046638 30 WNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI 109 (306)
Q Consensus 30 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (306)
.......+.+..++..|+..+....+..+ -+..-|..-...+...++++++.--.+.-.+.... ....+.....++..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhh
Confidence 33445567777788888888888887642 23344455555556666666665555444433211 12233333344444
Q ss_pred cCChHHHHHHHHh---------------cCc-----CCchhHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHH
Q 046638 110 CGAINDANKVFSS---------------MDE-----RDLVSWNSL-LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168 (306)
Q Consensus 110 ~g~~~~a~~~~~~---------------~~~-----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 168 (306)
.++..+|.+.++. ... |....|..+ ..++...|++++|...--...+.... +......
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~v 208 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYV 208 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHh
Confidence 4444444433331 111 112233332 24566778888888776666554322 2222222
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCCCC---------CcHhHHHHHHHHHhccCChHHHHHHHHHhcCC------CChh
Q 046638 169 VLSACCHAGFIDKGLQYFYLMRNDASLEP---------PRAEHYTAIVGLLGRAGFLNEAESFINSMSRN------PGPS 233 (306)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~ 233 (306)
-..++.-.++.+.|...|++....+.... .-...+..-.+-..+.|++.+|.+.|.+.+.- ++..
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 23344456778888888887765442111 01122223334456788999999999888752 5566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCC
Q 046638 234 VYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299 (306)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 299 (306)
.|.....+..+.|+..+|+.--++++.++|.-...+..-+.++...++|++|.+.++...+..-.+
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 677777778889999999999999999998877888888889999999999999988776654443
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.35 E-value=2.4e-05 Score=57.22 Aligned_cols=130 Identities=19% Similarity=0.194 Sum_probs=89.7
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHH
Q 046638 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD--GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204 (306)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 204 (306)
....+..+...+...|++++|...|++.......+. ...+..+..++.+.|++++|...+.+..+.. |.+...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHH
Confidence 345677777788888888888888888876544332 3567777888888888888888888877643 34666677
Q ss_pred HHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcC
Q 046638 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATD 280 (306)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 280 (306)
.+..++...|+...+..-++... ..+++|.+++++++...|++ +..++..+...|
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 77777777777666554433322 23677888888888888865 444444444444
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.34 E-value=2.1e-06 Score=54.53 Aligned_cols=81 Identities=12% Similarity=0.217 Sum_probs=44.8
Q ss_pred cCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHH
Q 046638 141 HGYSREAVQLFEQMQKTEIK-PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219 (306)
Q Consensus 141 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (306)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+.. +.+......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~---~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD---PSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH---HCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC---CCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666655431 2333444466666666777776666665 2111 12334444556666666666666
Q ss_pred HHHHHH
Q 046638 220 ESFINS 225 (306)
Q Consensus 220 ~~~~~~ 225 (306)
++.|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.34 E-value=3.1e-05 Score=56.63 Aligned_cols=131 Identities=9% Similarity=0.070 Sum_probs=87.2
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHH
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID--YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRL 103 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (306)
....+..+...+...|++++|+..|++..+.+..+. ...+..+..++.+.|++++|...+++..+..+. +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 455677788888889999999999998877543322 356777778888889999999999888886543 46667777
Q ss_pred HHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCC
Q 046638 104 VFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178 (306)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 178 (306)
+.++...|+...+..-++... ..+++|.+.+++....+ |+. |..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~-----------------~~~~~A~~~~~~a~~~~--p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE-----------------ALFDKAAEYWKQAIRLA--PNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH-----------------HHHHHHHHHHHHHHhhC--chh--HHHHHHHHHhcCc
Confidence 778887777655443333211 22566777777765542 322 4455555554443
No 164
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.6e-05 Score=60.12 Aligned_cols=105 Identities=16% Similarity=0.119 Sum_probs=76.5
Q ss_pred CCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhc---CCHHHHHHHHHHHhhcCCCchHHHHH
Q 046638 197 PPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVH---GNREIAVRSAKRVLDLWPNDPAIYVL 271 (306)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 271 (306)
|.|...|-.|...|...|+++.|..-|.+..+ .+++..+..+..++..+ ....++..+|++++..+|+++.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 45777888888888888888888888877765 25566666666664332 23467788888888888888888888
Q ss_pred HHHHHhhcCChhhHHHHHHHHhhcCCCCCC
Q 046638 272 LSNVSKATDCWDDAGDIRTLMYNRGIRKKP 301 (306)
Q Consensus 272 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 301 (306)
|+..+...|++.+|...++.|.+..-..+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 888888888888888888888775544433
No 165
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.30 E-value=0.0021 Score=56.76 Aligned_cols=216 Identities=10% Similarity=0.092 Sum_probs=142.0
Q ss_pred hhcCChHHHHhhhhhccC--cchHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHH
Q 046638 7 SRCDSSLDFQNVYSSVRT--RNQISWNAIIA--GFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGK 82 (306)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (306)
...+++.+|.+-.+++.. ||... ...+. .+.+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALY-AKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 345677788887777643 44332 22333 356889999999888887765543 7888899999999999999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHH----HHHHHHhcCcCCchhHHHHHHHHHhc-CC---------HHHHH
Q 046638 83 QMHALIFKIGYDSNVFVQNRLVFMYAICGAIND----ANKVFSSMDERDLVSWNSLLLGCAHH-GY---------SREAV 148 (306)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~l~~~~~~~-~~---------~~~a~ 148 (306)
.+|+...+.. |+......+..+|.+.+++.+ |+++++...+.--..|+. ++...+. .. ..-|.
T Consensus 98 ~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHH
Confidence 9999998864 557777778888888887655 555666555443344443 3332221 11 23455
Q ss_pred HHHHHHHhcC-CCccHHHHHHHHHHHHccCChHHHHHHHHH-HHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHh
Q 046638 149 QLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQYFYL-MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSM 226 (306)
Q Consensus 149 ~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (306)
..++.+.+.+ ..-+..-...-...+...|.+++|..++.. ..+.. .+.+...-+.-+..+...+++.+..++-.++
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l--~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKL--TSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 5666665544 222333333334456678889999998843 33322 2224444567788888999999998888888
Q ss_pred cCC
Q 046638 227 SRN 229 (306)
Q Consensus 227 ~~~ 229 (306)
..+
T Consensus 253 l~k 255 (932)
T KOG2053|consen 253 LEK 255 (932)
T ss_pred HHh
Confidence 765
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.30 E-value=6.5e-05 Score=64.38 Aligned_cols=140 Identities=14% Similarity=0.004 Sum_probs=85.1
Q ss_pred CCchhHHHHHHHHHh--cC---CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccC--------ChHHHHHHHHHHHhc
Q 046638 126 RDLVSWNSLLLGCAH--HG---YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG--------FIDKGLQYFYLMRND 192 (306)
Q Consensus 126 ~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~ 192 (306)
.+...|...+.+... .+ +.+.|..+|++..+..+. ....+..+..++.... +...+.+...+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 355677777766432 22 266788888888776433 2334443333332211 122333333332221
Q ss_pred CCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchH
Q 046638 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267 (306)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 267 (306)
. ..+.++.+|..+.-.....|++++|...+++... +|+...|..+...+...|+.++|.+.++++..++|.++.
T Consensus 414 ~-~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 414 P-ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred c-cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1 1233556677776666677888888888888776 467777777778888888888888888888888887653
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.28 E-value=0.00042 Score=55.07 Aligned_cols=172 Identities=10% Similarity=0.067 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--hhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHH
Q 046638 29 SWNAIIAGFCNLGSGEQALKCFSEMRQAGID---ID--YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRL 103 (306)
Q Consensus 29 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (306)
.|......|...|++++|.+.|.+..+.... +. ...|.....++ +..++++|...+++ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~---------------A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEK---------------A 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHH---------------H
Confidence 4666667777888888888888776432110 00 11122222222 22244444444433 3
Q ss_pred HHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHh----cCCCcc--HHHHHHHHHHHHcc
Q 046638 104 VFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH-GYSREAVQLFEQMQK----TEIKPD--GTTFLVVLSACCHA 176 (306)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~----~~~~p~--~~~~~~l~~~~~~~ 176 (306)
+..|...|++..|-..+. .+...|-.. |++++|++.|++..+ .| .+. ...+..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 334445555554443332 344445455 666666666665533 12 111 22344555566666
Q ss_pred CChHHHHHHHHHHHhcCCCCC---CcH-hHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 177 GFIDKGLQYFYLMRNDASLEP---PRA-EHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~---~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
|++++|.++|+++.......+ .+. ..+...+-++...|++..|.+.+++...
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666666554321111 111 1222333344555666666666666553
No 168
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.27 E-value=0.0018 Score=57.18 Aligned_cols=223 Identities=10% Similarity=0.098 Sum_probs=148.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH--HhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChH
Q 046638 37 FCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVG--AIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN 114 (306)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 114 (306)
....+++.+|+.-..++.+. .|+.. |..++. .+.+.|..++|..+++.....+.. |..|...+-.+|...|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34668899999999998775 35543 333333 346899999999888887766655 8899999999999999999
Q ss_pred HHHHHHHhcCc--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccC----------ChHHH
Q 046638 115 DANKVFSSMDE--RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG----------FIDKG 182 (306)
Q Consensus 115 ~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------~~~~a 182 (306)
+|..+|++..+ |+......+..+|.+.+.+.+-.+.=-+|.+. .+-+...|=++++...+.- -..-|
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 99999999986 55555566677888888776544444344332 2223333333444333211 12346
Q ss_pred HHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHH-HhcCC-C--ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 183 LQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFIN-SMSRN-P--GPSVYKALLSACQVHGNREIAVRSAKRV 258 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (306)
.+.++.+.+..+.. .+..=.......+...|++++|.+++. ....+ + +...-+.-+..+...+++.+..++-.++
T Consensus 174 ~~m~~~~l~~~gk~-~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKI-ESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhccCCcc-chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 66677776655311 122222333445567888999999984 33332 2 2233345566788899999999999999
Q ss_pred hhcCCCc
Q 046638 259 LDLWPND 265 (306)
Q Consensus 259 ~~~~p~~ 265 (306)
+..+++|
T Consensus 253 l~k~~Dd 259 (932)
T KOG2053|consen 253 LEKGNDD 259 (932)
T ss_pred HHhCCcc
Confidence 9998887
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.27 E-value=4.6e-05 Score=60.49 Aligned_cols=161 Identities=12% Similarity=0.098 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCcc--HHHHHHHHHHHHcc-CChHHHHHHHHHHHhcCC---CCCCcH
Q 046638 131 WNSLLLGCAHHGYSREAVQLFEQMQK----TEIKPD--GTTFLVVLSACCHA-GFIDKGLQYFYLMRNDAS---LEPPRA 200 (306)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~---~~~~~~ 200 (306)
|.....+|.+. ++++|...+++... .| .|+ ...+..+...|... |+++.|.+.|++..+... ....-.
T Consensus 78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~ 155 (282)
T PF14938_consen 78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAA 155 (282)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHH
Confidence 33344444333 77777777766543 23 222 23566677788888 899999999988655321 111134
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhcCC----CC----hh-hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-----ch
Q 046638 201 EHYTAIVGLLGRAGFLNEAESFINSMSRN----PG----PS-VYKALLSACQVHGNREIAVRSAKRVLDLWPN-----DP 266 (306)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~----~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-----~~ 266 (306)
.++..++..+.+.|++++|.++|+++... +- .. .+...+-.+...||+..|.+.+++.....|. ..
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 56678888999999999999999988642 11 11 2233344567789999999999999988774 23
Q ss_pred HHHHHHHHHHhh--cCChhhHHHHHHHHh
Q 046638 267 AIYVLLSNVSKA--TDCWDDAGDIRTLMY 293 (306)
Q Consensus 267 ~~~~~l~~~~~~--~g~~~~a~~~~~~m~ 293 (306)
.+...|+.++.. ...++++..-|+.+.
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 355566666655 234555665555443
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=9.2e-06 Score=62.27 Aligned_cols=112 Identities=16% Similarity=0.092 Sum_probs=93.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC-hhhHHHHHHHHHhcC
Q 046638 169 VLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG-PSVYKALLSACQVHG 246 (306)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~l~~~~~~~~ 246 (306)
=.+-..+.+++.+|+..|.+.++- .|.++..|..-..+|.+.|.++.|++-.+..+.- |. ..+|..|..+|...|
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l---~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIEL---DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhc---CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 345567889999999999999864 4668889999999999999999999998888752 33 468999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChh
Q 046638 247 NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWD 283 (306)
Q Consensus 247 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 283 (306)
++++|++.|+++++++|++......|-.+-.+.+..+
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999876667766666655555
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.24 E-value=3.1e-06 Score=51.27 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=35.4
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
...|++++|++.|++++...|+++.+...++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566777777777777777777767777777777777777777777766654
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.24 E-value=5.3e-06 Score=49.71 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=44.4
Q ss_pred HHHHHhccCChHHHHHHHHHhcCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch
Q 046638 206 IVGLLGRAGFLNEAESFINSMSRN-P-GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDP 266 (306)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 266 (306)
++..+.+.|++++|...|+++... | +...+..+..++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677788888888888888764 4 445667777778888888888888888888888764
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.23 E-value=3.4e-05 Score=61.00 Aligned_cols=129 Identities=10% Similarity=0.047 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhc-cCChHHHHHHHHHhcCC--CChhhHHHHHH
Q 046638 164 TTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGR-AGFLNEAESFINSMSRN--PGPSVYKALLS 240 (306)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~--~~~~~~~~l~~ 240 (306)
.+|..++....+.+..+.|..+|.+..+.... +..+|...+..-.. .++.+.|..+|+...+. .+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~---~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC---TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS----THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 46788889999999999999999999865432 45667766666444 56777799999999874 66778888999
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCch---HHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 241 ACQVHGNREIAVRSAKRVLDLWPNDP---AIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
-+...++.+.|..+|++.+..-|.+. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999766543 58999999999999999999999888763
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.22 E-value=4.9e-05 Score=55.37 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 046638 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKP--DGTTFLVVLSACCHAGFIDKGLQYFYLMR 190 (306)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (306)
|..++..+...|++++|+..|++.......| ...++..+..++...|++++|...+++..
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444455555555554444332111 11234444444444444444444444444
No 175
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.22 E-value=4.2e-05 Score=49.81 Aligned_cols=81 Identities=9% Similarity=-0.071 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHhcccc--------chhhHHHHHHHHHHcCCCccHHH
Q 046638 29 SWNAIIAGFCNLGSGEQALKCFSEMRQAGI-DIDYFTITSIVGAIGVIS--------GFKEGKQMHALIFKIGYDSNVFV 99 (306)
Q Consensus 29 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 99 (306)
+....|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334566777788999999999999999999 999999999998776543 34566789999999999999999
Q ss_pred HHHHHHHHHh
Q 046638 100 QNRLVFMYAI 109 (306)
Q Consensus 100 ~~~l~~~~~~ 109 (306)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987765
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.21 E-value=0.00016 Score=48.88 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHH
Q 046638 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPD--GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLL 210 (306)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (306)
.+..++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..+++.........+.+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 355667778888888888888888776544 335566777888888888888888887765422111333444455677
Q ss_pred hccCChHHHHHHHHHhc
Q 046638 211 GRAGFLNEAESFINSMS 227 (306)
Q Consensus 211 ~~~~~~~~a~~~~~~~~ 227 (306)
...|+.++|.+.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 78888888888776544
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.20 E-value=7.2e-05 Score=54.48 Aligned_cols=81 Identities=10% Similarity=-0.042 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHH
Q 046638 27 QISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLV 104 (306)
Q Consensus 27 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (306)
...|..+...+...|++++|+..|++.......+ ...++..+..++...|++++|...++...+..+. ...++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 4456667777777788888888887776643222 1235666666777777777777777777765322 344455555
Q ss_pred HHHH
Q 046638 105 FMYA 108 (306)
Q Consensus 105 ~~~~ 108 (306)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
No 178
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.18 E-value=2.7e-06 Score=42.42 Aligned_cols=29 Identities=45% Similarity=1.005 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 046638 29 SWNAIIAGFCNLGSGEQALKCFSEMRQAG 57 (306)
Q Consensus 29 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 57 (306)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 67888888888888888888888887765
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.18 E-value=3.1e-06 Score=42.20 Aligned_cols=29 Identities=31% Similarity=0.614 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046638 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTE 158 (306)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 158 (306)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777776665
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.17 E-value=0.00097 Score=47.86 Aligned_cols=125 Identities=9% Similarity=0.075 Sum_probs=69.1
Q ss_pred CccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC----CChhhH
Q 046638 160 KPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN----PGPSVY 235 (306)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~ 235 (306)
.|+...-..+..+..+.|+..+|...|++... |.+ ..++.....+.++....+++..|...++++.+- .++.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~f-A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS-GIF-AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-ccc-CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34555455566666666666666666665553 222 235555666666666666666666666655441 223334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHH
Q 046638 236 KALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGD 287 (306)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 287 (306)
..+...+...|++..|...|+.++..-|+ +..-......+.++|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 44555566666666666666666665552 3344444555555565555543
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.15 E-value=0.00034 Score=52.64 Aligned_cols=167 Identities=13% Similarity=0.114 Sum_probs=86.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCc--CC----chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHc
Q 046638 102 RLVFMYAICGAINDANKVFSSMDE--RD----LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175 (306)
Q Consensus 102 ~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 175 (306)
..+..+...|++++|.+.|+.+.. |+ ....-.++.++.+.|+++.|...+++..+.-+.-....+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 344445556666666666666653 21 123444566666667777777777666554322111112212222111
Q ss_pred -------------cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHH
Q 046638 176 -------------AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSAC 242 (306)
Q Consensus 176 -------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 242 (306)
.+...+|...|+.+. .-|=......+|...+..+....... -..+..-|
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li-----------------~~yP~S~y~~~A~~~l~~l~~~la~~-e~~ia~~Y 151 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELI-----------------KRYPNSEYAEEAKKRLAELRNRLAEH-ELYIARFY 151 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHH-----------------HH-TTSTTHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHH-----------------HHCcCchHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 111223333333333 33333344445544444443211111 11246668
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCch---HHHHHHHHHHhhcCChhhHH
Q 046638 243 QVHGNREIAVRSAKRVLDLWPNDP---AIYVLLSNVSKATDCWDDAG 286 (306)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~ 286 (306)
.+.|.+..|..-++.+++.-|+++ .....++.+|.+.|..+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999999999888754 35677888899999877443
No 182
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.14 E-value=0.0016 Score=49.03 Aligned_cols=182 Identities=13% Similarity=0.088 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHH
Q 046638 29 SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDI--DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFM 106 (306)
Q Consensus 29 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (306)
..-.....+...|++.+|+..|+.+...-+.. -....-.++.++.+.|+++.|...++..++.-+.-...-+...+.+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 34445556777888888888888887653211 1233445566777778888888888887766433221112212211
Q ss_pred HHhcCChHHHHHHHHhcCcCC-------chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCh
Q 046638 107 YAICGAINDANKVFSSMDERD-------LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179 (306)
Q Consensus 107 ~~~~g~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 179 (306)
.+......... ...+| ...+..++.-|=.+.-..+|...+..+... .-... ..+...|.+.|.+
T Consensus 87 ~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 87 LSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-LYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-HHHHHHHHCTT-H
T ss_pred HHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHcccH
Confidence 11111111110 00111 112333444444444455555544444321 01111 1245566677777
Q ss_pred HHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHH
Q 046638 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219 (306)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (306)
..|..-++.+.+.....+........++.+|.+.|..+.+
T Consensus 158 ~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 158 KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777776666543332334445566666666666533
No 183
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.12 E-value=1.2e-05 Score=49.38 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=39.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
..|.+.+++++|.+++++++...|+++..+...+.++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34666777777777777777777777777777777777777777777777766654
No 184
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.11 E-value=5.9e-05 Score=55.46 Aligned_cols=98 Identities=8% Similarity=0.119 Sum_probs=81.2
Q ss_pred HHhhhhhc--cCcchHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc-----------
Q 046638 15 FQNVYSSV--RTRNQISWNAIIAGFCNL-----GSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS----------- 76 (306)
Q Consensus 15 A~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------- 76 (306)
-...|+.. ...+-.+|..++..|.+. |.++-....+..|.+-|+.-|..+|+.|+..+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 45566665 567888999999888754 778888889999999999999999999999886422
Q ss_pred -----chhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 046638 77 -----GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112 (306)
Q Consensus 77 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (306)
+.+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 347788999999999999999999999999877664
No 185
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.10 E-value=0.00011 Score=57.23 Aligned_cols=102 Identities=13% Similarity=0.102 Sum_probs=67.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC----hhhHHHHH
Q 046638 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG----PSVYKALL 239 (306)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~----~~~~~~l~ 239 (306)
.|...+....+.|++++|...|+.+.+.....+-.+.++..++..|...|++++|...|+.+... |+ +..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 45554444456678888888888777655322212456677777788888888888888777653 32 33444455
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCch
Q 046638 240 SACQVHGNREIAVRSAKRVLDLWPNDP 266 (306)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 266 (306)
..+...|+.++|..+|+++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 666777888888888888888777654
No 186
>PRK15331 chaperone protein SicA; Provisional
Probab=98.06 E-value=4.7e-05 Score=53.62 Aligned_cols=88 Identities=7% Similarity=-0.070 Sum_probs=55.4
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCC
Q 046638 170 LSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGN 247 (306)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 247 (306)
..-+...|++++|..+|.-+..-+ +-+...+..|..++-..+++++|+..|..... ..|+..+-.....+...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 334456777777777777665433 33556666777777777777777777665432 2333334445666777777
Q ss_pred HHHHHHHHHHHhh
Q 046638 248 REIAVRSAKRVLD 260 (306)
Q Consensus 248 ~~~a~~~~~~~~~ 260 (306)
.+.|...|+.+++
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777666
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.06 E-value=0.00028 Score=47.63 Aligned_cols=92 Identities=13% Similarity=0.106 Sum_probs=44.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHhccccchhhHHHHHHHHHHcCCCc--cHHHHHHHHHHHH
Q 046638 33 IIAGFCNLGSGEQALKCFSEMRQAGIDID--YFTITSIVGAIGVISGFKEGKQMHALIFKIGYDS--NVFVQNRLVFMYA 108 (306)
Q Consensus 33 li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 108 (306)
+..++-..|+.++|+.+|++....|+..+ ...+..+.+.+...|++++|..+++......+.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 33445556666666666666666554332 1233444455555666666666666555442210 1122222333444
Q ss_pred hcCChHHHHHHHHhcC
Q 046638 109 ICGAINDANKVFSSMD 124 (306)
Q Consensus 109 ~~g~~~~a~~~~~~~~ 124 (306)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555544433
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.06 E-value=1.5e-05 Score=48.35 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=43.6
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcC-CHHHHHHHHHHHhhcCC
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHG-NREIAVRSAKRVLDLWP 263 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 263 (306)
++.+|..++..+...|++++|+..|++... . .++..|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345666777777777777777777776665 2 34455666666677777 57777777777776665
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.06 E-value=0.0019 Score=46.46 Aligned_cols=127 Identities=17% Similarity=0.061 Sum_probs=78.0
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHH
Q 046638 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205 (306)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 205 (306)
|++..--.|..++...|++.+|...|++...--..-|......+.++....+++..|...++.+.+...... ++.....
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r-~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR-SPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC-CCCchHH
Confidence 455555566677777777777777777766443444566666677777777777777777777665442211 3444556
Q ss_pred HHHHHhccCChHHHHHHHHHhcCC-CChhhHHHHHHHHHhcCCHHHHHH
Q 046638 206 IVGLLGRAGFLNEAESFINSMSRN-PGPSVYKALLSACQVHGNREIAVR 253 (306)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 253 (306)
+...|...|+++.|+.-|+....- |+...-......+.++|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 677777777777777777777653 444433333334556665555443
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.04 E-value=0.00046 Score=59.29 Aligned_cols=136 Identities=16% Similarity=0.109 Sum_probs=98.4
Q ss_pred CCCccHHHHHHHHHHHHcc-----CChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccC--------ChHHHHHHHH
Q 046638 158 EIKPDGTTFLVVLSACCHA-----GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG--------FLNEAESFIN 224 (306)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~ 224 (306)
+.+.+...|...+.+.... ++.+.|..+|++..+.. |.....+..+..++.... +...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld---P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE---PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3455677888888775432 23678999999998755 556666666655553321 2334455554
Q ss_pred HhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 046638 225 SMSR----NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 225 ~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 297 (306)
+... ..++..|..+.-.+...|++++|...+++++.++| +...|..++.++...|+.++|.+.+++....+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4322 23446677776667778999999999999999999 578999999999999999999999988876443
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.04 E-value=0.00013 Score=56.74 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHH
Q 046638 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD--GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV 207 (306)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (306)
.|......+.+.|++++|...|+.+.+..+... ...+..+..+|...|++++|...|+.+.+.....|.....+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 455555555677999999999999987644321 246677889999999999999999999877665555677777788
Q ss_pred HHHhccCChHHHHHHHHHhcCC-CChh
Q 046638 208 GLLGRAGFLNEAESFINSMSRN-PGPS 233 (306)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~-~~~~ 233 (306)
..+...|+.++|...|+++.+. |+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 8888999999999999988864 5544
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.02 E-value=1.6e-05 Score=48.11 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=24.7
Q ss_pred cCChHHHHHHHHHhcC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch
Q 046638 213 AGFLNEAESFINSMSR-NP-GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDP 266 (306)
Q Consensus 213 ~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 266 (306)
.|++++|+++|+++.. .| +...+..+..+|.+.|++++|..+++++....|+++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 4445555555544433 12 333344444445555555555555555555555443
No 193
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.01 E-value=0.00017 Score=59.58 Aligned_cols=120 Identities=14% Similarity=0.078 Sum_probs=89.3
Q ss_pred CCCCChhhHHHHHHHhccccchhhHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc----CCchh
Q 046638 57 GIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKI--GYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE----RDLVS 130 (306)
Q Consensus 57 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~ 130 (306)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..+++..|.+.|..+.++.+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556677777888888888888888888887765 2222344556888888888888888888877665 78888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHcc
Q 046638 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176 (306)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 176 (306)
+|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888877666656666766666666554
No 194
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.98 E-value=5.6e-05 Score=62.38 Aligned_cols=108 Identities=14% Similarity=0.125 Sum_probs=73.1
Q ss_pred hhhhhhcCChHHHHhhhhhccCc------chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc
Q 046638 3 ILTYSRCDSSLDFQNVYSSVRTR------NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (306)
++.+....+++.+..++.+.+.. -..+.+++++.|...|..++++.+++.=...|+-||..+++.|+..+.+.|
T Consensus 73 vn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~ 152 (429)
T PF10037_consen 73 VNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKG 152 (429)
T ss_pred HhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcc
Confidence 34444555666677776665431 133456778888888888888888877777788888888888888888888
Q ss_pred chhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 046638 77 GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC 110 (306)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (306)
++..|.++...|...+.-.+..|+..-+.+|.+.
T Consensus 153 ~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 153 NYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred cHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888777777666555555555444444444
No 195
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.96 E-value=0.006 Score=49.14 Aligned_cols=274 Identities=14% Similarity=0.078 Sum_probs=181.7
Q ss_pred hhcCChHHHHhhhhhcc---CcchHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHhccccchh
Q 046638 7 SRCDSSLDFQNVYSSVR---TRNQISWNAIIA--GFCNLGSGEQALKCFSEMRQAGIDIDYF--TITSIVGAIGVISGFK 79 (306)
Q Consensus 7 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 79 (306)
+-.|+-..|+++-.+-. ..|....-.++. +-.-.|+++.|.+-|+.|... |... -...|.-...+.|+.+
T Consensus 95 agAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 95 AGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred hccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 34678888888877643 345554444443 455679999999999999873 3322 2333444446789999
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc-----CCchh--HHHHHHHHH---hcCCHHHHHH
Q 046638 80 EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-----RDLVS--WNSLLLGCA---HHGYSREAVQ 149 (306)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~--~~~l~~~~~---~~~~~~~a~~ 149 (306)
.|.++-+..-..-+. -...+..++...+..|+++.|+++.+.-.+ +++.- --.|+.+-. -..+...|..
T Consensus 172 aAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 999998888776543 356778889999999999999999987653 44321 112222211 1234666666
Q ss_pred HHHHHHhcCCCccHH-HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 150 LFEQMQKTEIKPDGT-TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 150 ~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
.-.+..+ +.|+.. .-.....++.+.|+..++-.+++.+-+.. |.+..+.. ..+.+.|+. +..-+++...
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e----PHP~ia~l--Y~~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE----PHPDIALL--YVRARSGDT--ALDRLKRAKK 320 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC----CChHHHHH--HHHhcCCCc--HHHHHHHHHH
Confidence 6555543 344533 22345678899999999999999988754 24443332 233345543 3333332221
Q ss_pred -----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhh-cCChhhHHHHHHHHhhc
Q 046638 229 -----NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA-TDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 229 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~ 295 (306)
+.+..+...+..+....|++..|..--+.+.+..|. ...|..|...-.. .|+-.++...+-+-.+.
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 245566777788888999999999999999889995 5688888887655 49999999888666543
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.96 E-value=0.00064 Score=54.84 Aligned_cols=254 Identities=12% Similarity=0.034 Sum_probs=164.0
Q ss_pred hhhcCChHHHHhhhhhccCcc-------hHHHHHHHHHHHhcCChHHHHHHHHH--HHHc--CC-CCChhhHHHHHHHhc
Q 046638 6 YSRCDSSLDFQNVYSSVRTRN-------QISWNAIIAGFCNLGSGEQALKCFSE--MRQA--GI-DIDYFTITSIVGAIG 73 (306)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~--~~~~--~~-~~~~~~~~~l~~~~~ 73 (306)
+|+.|+....+..|+...+.. ...|..|.++|.-.+++++|+++-.. .+.+ |- .-...+-..|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 688999999999999875532 33577777888888899999887532 1111 10 011223333444555
Q ss_pred cccchhhHHHHHHH----HHHcCCC-ccHHHHHHHHHHHHhcCC--------------------hHHHHHHHHhcCc---
Q 046638 74 VISGFKEGKQMHAL----IFKIGYD-SNVFVQNRLVFMYAICGA--------------------INDANKVFSSMDE--- 125 (306)
Q Consensus 74 ~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~--- 125 (306)
-.|.+++|...-.+ ..+.|-. ....++..|...|...|+ ++.|.++|.+-.+
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777654433 2222211 123455667777766653 2234444443221
Q ss_pred ------CCchhHHHHHHHHHhcCCHHHHHHHHHHH----HhcCCCc-cHHHHHHHHHHHHccCChHHHHHHHHHHH----
Q 046638 126 ------RDLVSWNSLLLGCAHHGYSREAVQLFEQM----QKTEIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLMR---- 190 (306)
Q Consensus 126 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---- 190 (306)
..-..|..|...|.-.|+++.|+..-+.= .+-|-.. ....+..+.+++.-.|+++.|.+.|+...
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 12346777777788889999998766542 2223222 23567888999999999999999887632
Q ss_pred hcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-------C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 191 NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-------N-PGPSVYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
+-+.-. -...+..+|.+.|.-..++++|+.++.+-.. + .....+.+|..++...|..++|..+.+..++
T Consensus 267 elg~r~-vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 267 ELGNRT-VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred Hhcchh-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 222221 1455667888999989999999998876543 1 4556788899999999999999999888776
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0033 Score=47.81 Aligned_cols=135 Identities=11% Similarity=-0.017 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC---CcHhHHHHH
Q 046638 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEP---PRAEHYTAI 206 (306)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~l 206 (306)
+-+.++..+.-.|.+.-....+.+.++...+.+......+++.-.+.|+.+.|..+|++..+..+... .+..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45677778888899999999999999887777888888999999999999999999997765433211 122233344
Q ss_pred HHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 046638 207 VGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 264 (306)
...|.-.+++.+|...+.++... .++...|.-.-...-.|+...|++.++.++...|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 45667788999999999998874 33333444333445578999999999999998885
No 198
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.88 E-value=0.00055 Score=48.52 Aligned_cols=115 Identities=19% Similarity=0.181 Sum_probs=71.8
Q ss_pred HccCChHHHHHHHHHHHhcCCCCC-CcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 046638 174 CHAGFIDKGLQYFYLMRNDASLEP-PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAV 252 (306)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 252 (306)
...++.+.+...+.++........ ++... ..........++... ......++..+...|++++|.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHHH
Confidence 456677777777777665432111 11111 112222223333322 124555777788899999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHh-----hcCCCCCCC
Q 046638 253 RSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY-----NRGIRKKPG 302 (306)
Q Consensus 253 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~ 302 (306)
...++++..+|-+...+..++.+|...|+..+|.+.|+++. +.|+.|++.
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 99999999999999999999999999999999999998874 468877654
No 199
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0034 Score=50.82 Aligned_cols=255 Identities=15% Similarity=0.045 Sum_probs=152.0
Q ss_pred hhhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHhccccchhh
Q 046638 5 TYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDID-YFTITSIVGAIGVISGFKE 80 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 80 (306)
.+.+..++.+|+..+.... +.++.-|..=...+...|++++|+--.+.-.+. +|. .......-+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHHH
Confidence 4455666667777666532 234555555566677777888777666555442 121 1122223333333333333
Q ss_pred HHHHHH---------------HHHHcCC-CccHHHHHHH-HHHHHhcCChHHHHHHHHhcCcCCch-hHHHHHH--HHHh
Q 046638 81 GKQMHA---------------LIFKIGY-DSNVFVQNRL-VFMYAICGAINDANKVFSSMDERDLV-SWNSLLL--GCAH 140 (306)
Q Consensus 81 a~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~--~~~~ 140 (306)
|.+.++ ....... +|...++..| ..++...|+.++|.+.--.+.+-|.. .+..++. ++.-
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY 215 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccc
Confidence 333332 1111111 2333444444 45778889999999887777654332 2233333 4456
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHH---HHH----------HHHHHccCChHHHHHHHHHHHhcCC-CCCCcHhHHHHH
Q 046638 141 HGYSREAVQLFEQMQKTEIKPDGTTF---LVV----------LSACCHAGFIDKGLQYFYLMRNDAS-LEPPRAEHYTAI 206 (306)
Q Consensus 141 ~~~~~~a~~~~~~m~~~~~~p~~~~~---~~l----------~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~l 206 (306)
.++.+.|...|++.+..+ |+...- ... .+-..+.|++..|.+.|.+...... -..|+...|...
T Consensus 216 ~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 788899999999887654 332221 111 2234678999999999988775332 112466778888
Q ss_pred HHHHhccCChHHHHHHHHHhcCCCChhhHHHH--HHHHHhcCCHHHHHHHHHHHhhcCC
Q 046638 207 VGLLGRAGFLNEAESFINSMSRNPGPSVYKAL--LSACQVHGNREIAVRSAKRVLDLWP 263 (306)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~p 263 (306)
.....+.|+.++|+.-.+....-.+......+ ..++...+++++|.+-|+++.+...
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88888999999999988887753333333333 3446678899999999999888544
No 200
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.86 E-value=0.0094 Score=48.07 Aligned_cols=252 Identities=15% Similarity=0.136 Sum_probs=158.4
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHh--ccccchhhHHHHHHHHHHcCCCccHHH--HHH
Q 046638 29 SWNAIIAGFCN--LGSGEQALKCFSEMRQAGIDIDYFTITSIVGAI--GVISGFKEGKQMHALIFKIGYDSNVFV--QNR 102 (306)
Q Consensus 29 ~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 102 (306)
.|..|-.++.. .|+-..|.++-.+..+. +..|......++.+- .-.|+++.|.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 46666666554 56777787776655432 344555555555533 3469999999999999852 22221 223
Q ss_pred HHHHHHhcCChHHHHHHHHhcCc--CC-chhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHHH--HHHHHHHHHc-
Q 046638 103 LVFMYAICGAINDANKVFSSMDE--RD-LVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTT--FLVVLSACCH- 175 (306)
Q Consensus 103 l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~--~~~l~~~~~~- 175 (306)
|.----+.|+.+.|..+-++.-. |. .-.+.+.+...|..|+|+.|+++++.-+... +.++..- -..|+.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33334567888989888887764 33 3477888899999999999999998765533 3444332 2333333221
Q ss_pred --cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCChhhHHHHHHHHHhcCCHHHHH
Q 046638 176 --AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPGPSVYKALLSACQVHGNREIAV 252 (306)
Q Consensus 176 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 252 (306)
..+...|...-.+.. .+.|.-+..-..-..++.+.|+..++-.+++.+-+ .|.+..+...+ ..+.|+. +.
T Consensus 240 ~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdt--a~ 312 (531)
T COG3898 240 LLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDT--AL 312 (531)
T ss_pred HhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCc--HH
Confidence 234455555444333 23332333344556788999999999999998876 37776554333 3455543 44
Q ss_pred HHHHHHh---hcCCCchHHHHHHHHHHhhcCChhhHHHHHHH
Q 046638 253 RSAKRVL---DLWPNDPAIYVLLSNVSKATDCWDDAGDIRTL 291 (306)
Q Consensus 253 ~~~~~~~---~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 291 (306)
.-++++. .+.|++......+..+-...|++..|..--+.
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aea 354 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEA 354 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4444444 47888888888888888888888877654443
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.0015 Score=50.75 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccC---ChHHHHH
Q 046638 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG---FLNEAES 221 (306)
Q Consensus 145 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~ 221 (306)
+....-++.-...++. |...|..|..+|...|+++.|...|.+..+-. |+++..+..+..++.... ...++..
T Consensus 139 ~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~---g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 139 EALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA---GDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred HHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 3333334443444443 77889999999999999999999998887644 457888888887765433 3568888
Q ss_pred HHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 046638 222 FINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265 (306)
Q Consensus 222 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 265 (306)
+|+++... .++.....|...+...|++.+|...|+.|++..|.+
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99988763 444555566667889999999999999999976654
No 202
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.83 E-value=0.0092 Score=48.04 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHH
Q 046638 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLL 210 (306)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (306)
.+.-+.-+...|+...|..+-.+. . -|+..-|...+.+++..++|++-.++-.. .. +|..|..++.+|
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK-----sPIGyepFv~~~ 247 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KK-----SPIGYEPFVEAC 247 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC-----CCCChHHHHHHH
Confidence 344455556667777776665554 2 35666777777777777777765554321 11 334567777777
Q ss_pred hccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 046638 211 GRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAK 256 (306)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 256 (306)
.+.|+..+|..+..++. +..-+..|.+.|++.+|.+..-
T Consensus 248 ~~~~~~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHCCCHHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHHHH
Confidence 77777777777776633 2334566667777766655533
No 203
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.80 E-value=0.012 Score=47.40 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 046638 164 TTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQ 243 (306)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 243 (306)
.+.+..+.-+...|+...|.++-.+. .+ |+...|-..+.+++..++|++-.++-.. +.++..|..++..|.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv--~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV--PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACL 248 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC--cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHH
Confidence 45556667778889988887775554 22 5899999999999999999998887553 346688999999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHH
Q 046638 244 VHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDI 288 (306)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 288 (306)
..|+..+|..+..++ | +..-+..|.++|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 999999999888872 2 14456677888888888665
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.80 E-value=0.00018 Score=44.14 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=45.1
Q ss_pred HHHhccCChHHHHHHHHHhcCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHH
Q 046638 208 GLLGRAGFLNEAESFINSMSRN-P-GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYV 270 (306)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 270 (306)
..|.+.+++++|.++++.+..- | ++..+......+...|++++|.+.++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4567778888888888877662 3 4455666777778888888888888888888887655443
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.79 E-value=8.5e-05 Score=40.35 Aligned_cols=42 Identities=31% Similarity=0.430 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 046638 233 SVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSN 274 (306)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 274 (306)
.++..+...|...|++++|+++|+++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457778899999999999999999999999999988887764
No 206
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.77 E-value=0.00067 Score=44.38 Aligned_cols=86 Identities=10% Similarity=0.117 Sum_probs=65.0
Q ss_pred HHHHHhccccchhhHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHH
Q 046638 67 SIVGAIGVISGFKEGKQMHALIFKIGY-DSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145 (306)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 145 (306)
..|..|...+++...-.+|+.+++.|+ -|+..+|+.++...++..--.. .-.++.-
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~-----------------------~ie~kl~ 86 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSE-----------------------DIENKLT 86 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccch-----------------------hHHHHHH
Confidence 345556667999999999999999998 8899999988877665432110 1123456
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHc
Q 046638 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCH 175 (306)
Q Consensus 146 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 175 (306)
+.+.+|+.|...+++|+..+|+.++..+.+
T Consensus 87 ~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 87 NLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 678889999999999999999999887654
No 207
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00076 Score=54.31 Aligned_cols=95 Identities=13% Similarity=0.074 Sum_probs=79.3
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHh
Q 046638 200 AEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSK 277 (306)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 277 (306)
..++..++-+|.+.+++.+|++...+.+. ++|+...-.-..++...|+++.|+..|+++++..|+|..+-.-|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45688899999999999999999998876 3677777677889999999999999999999999999888888888777
Q ss_pred hcCChhhH-HHHHHHHhh
Q 046638 278 ATDCWDDA-GDIRTLMYN 294 (306)
Q Consensus 278 ~~g~~~~a-~~~~~~m~~ 294 (306)
+.....+. .++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 76665554 678888864
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.0018 Score=49.22 Aligned_cols=127 Identities=11% Similarity=0.100 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHH-----HH
Q 046638 31 NAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRL-----VF 105 (306)
Q Consensus 31 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~ 105 (306)
+.++..+.-.|.+.-.+.++++..+...+.++.....+.+.-.+.||.+.|...|+...+..-..+..+.+.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 3444444445555555555555555444444444555555555555555555555544433222222222222 22
Q ss_pred HHHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046638 106 MYAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157 (306)
Q Consensus 106 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 157 (306)
.|.-.+++..|...|.++.. .|+...|.-.-+..-.|+..+|++.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344455555555555443 23333333333344445555555555555544
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.70 E-value=0.00011 Score=45.80 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC---chHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 234 VYKALLSACQVHGNREIAVRSAKRVLDL----WPN---DPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
+++.+...|...|++++|+..|+++++. .++ ...++..++.++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666677777777777777777652 221 24466777777777777777777776654
No 210
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.70 E-value=3.8e-05 Score=38.96 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=31.0
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHH
Q 046638 254 SAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGD 287 (306)
Q Consensus 254 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 287 (306)
+|+++++.+|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999999999999999999863
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.68 E-value=0.02 Score=46.68 Aligned_cols=164 Identities=17% Similarity=0.162 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcCcC-------CchhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCccHHHHH
Q 046638 98 FVQNRLVFMYAICGAINDANKVFSSMDER-------DLVSWNSLLLGCAH---HGYSREAVQLFEQMQKTEIKPDGTTFL 167 (306)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~ 167 (306)
.+...++-.|....+++..+++.+.+... ....-...+.++.+ .|+.++|+.++..+......++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34445666799999999999999999863 22233345566777 899999999999976666677888888
Q ss_pred HHHHHHHc---------cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCC-hH---HHHHHH---HHhc-CC-
Q 046638 168 VVLSACCH---------AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF-LN---EAESFI---NSMS-RN- 229 (306)
Q Consensus 168 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~~~-~~- 229 (306)
.+...|-. ....++|+..|.+.-+.. | +...--.++..+...|. ++ +..++- ..+. ++
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~---~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE---P-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC---c-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 88877632 234678888887765432 2 33222223333333332 22 222222 1111 11
Q ss_pred -----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 046638 230 -----PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND 265 (306)
Q Consensus 230 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 265 (306)
.+-..+.+++.++.-.|+.++|.+.++++.+..|+.
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 344456778889999999999999999999988764
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.67 E-value=0.00027 Score=58.09 Aligned_cols=102 Identities=13% Similarity=0.070 Sum_probs=74.3
Q ss_pred CCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCChh----hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHH
Q 046638 196 EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPGPS----VYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYV 270 (306)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 270 (306)
.|.+...++.+..+|...|++++|+..|++... .|+.. .|..+..+|...|+.++|+..++++++..+. .|.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~ 147 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFS 147 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHH
Confidence 356788899999999999999999999999766 46643 4888999999999999999999999996322 222
Q ss_pred HHHH--HHhhcCChhhHHHHHHHHhhcCCCCC
Q 046638 271 LLSN--VSKATDCWDDAGDIRTLMYNRGIRKK 300 (306)
Q Consensus 271 ~l~~--~~~~~g~~~~a~~~~~~m~~~~~~~~ 300 (306)
.+.. .+....+.++..++++...+.|....
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~~g 179 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGEDIG 179 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCccC
Confidence 1111 12223344567778888877776543
No 213
>PRK15331 chaperone protein SicA; Provisional
Probab=97.59 E-value=0.003 Score=44.68 Aligned_cols=94 Identities=7% Similarity=-0.055 Sum_probs=61.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhcc
Q 046638 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA 213 (306)
Q Consensus 134 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (306)
...-+...|++++|..+|+-+...++. +..-+..|..++...+++++|...|........ .|+..+-....+|...
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~---~dp~p~f~agqC~l~l 118 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK---NDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---CCCCccchHHHHHHHh
Confidence 344455677777777777777665443 444456666667777778888777766544332 2444456677777778
Q ss_pred CChHHHHHHHHHhcCCCC
Q 046638 214 GFLNEAESFINSMSRNPG 231 (306)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~ 231 (306)
|+.+.|...|+....+|.
T Consensus 119 ~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 119 RKAAKARQCFELVNERTE 136 (165)
T ss_pred CCHHHHHHHHHHHHhCcc
Confidence 888888887777776544
No 214
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.0015 Score=50.06 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=44.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChH
Q 046638 140 HHGYSREAVQLFEQMQKTEIKP--DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLN 217 (306)
Q Consensus 140 ~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (306)
+.|++..|...|...++..+.- ....+..|..++...|+++.|..+|..+.+.....|.-+..+..|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 4444555555555555433210 11223345555555555555555555555544444434445555555555555555
Q ss_pred HHHHHHHHhcCC
Q 046638 218 EAESFINSMSRN 229 (306)
Q Consensus 218 ~a~~~~~~~~~~ 229 (306)
+|...|+++.++
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.53 E-value=0.00035 Score=43.46 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=10.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHH
Q 046638 165 TFLVVLSACCHAGFIDKGLQYFYL 188 (306)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~ 188 (306)
++..+..++...|++++|.+++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444444444444443
No 216
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.48 E-value=0.049 Score=46.00 Aligned_cols=168 Identities=10% Similarity=0.120 Sum_probs=120.8
Q ss_pred hHHHHHHHHhcCc----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHccCChHHHHHHHH
Q 046638 113 INDANKVFSSMDE----RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFLVVLSACCHAGFIDKGLQYFY 187 (306)
Q Consensus 113 ~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (306)
.+....+++++.. .-..+|-.++..-.+..-.+.|..+|.++.+.+..+ +....++++..+| .++.+.|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 4445555555543 223467778888888888999999999999988777 5556677776655 577889999998
Q ss_pred HHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 046638 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-----PGPSVYKALLSACQVHGNREIAVRSAKRVLDLW 262 (306)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 262 (306)
.-.+..+ .++..-...++-+...|+-..+..+|++...+ .....|..++.--..-|++..+.++-++.....
T Consensus 426 LGLkkf~---d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 426 LGLKKFG---DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHhcC---CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 8666553 25555677888889999999999999999875 234689999998899999999999988888755
Q ss_pred CCch----HHHHHHHHHHhhcCChhh
Q 046638 263 PNDP----AIYVLLSNVSKATDCWDD 284 (306)
Q Consensus 263 p~~~----~~~~~l~~~~~~~g~~~~ 284 (306)
|.+. ..-..+++-|.-.+.+..
T Consensus 503 ~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 503 PADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred chhhcCCCChHHHHHHHHhhcccccc
Confidence 5211 123344444544444443
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.0048 Score=47.36 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=74.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-----CChhhHHHHH
Q 046638 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-----PGPSVYKALL 239 (306)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~ 239 (306)
.|+..+ .+.+.|++..|...|....+...-.+-.+..+--|..++...|++++|..+|..+... .-+..+-.|.
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466555 4456777888888888888766444445566777888888888888888888877653 2235566677
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCchHH
Q 046638 240 SACQVHGNREIAVRSAKRVLDLWPNDPAI 268 (306)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 268 (306)
....+.|+.++|...|+++.+.-|+.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 77788888888888888888888875543
No 218
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.45 E-value=0.011 Score=40.91 Aligned_cols=58 Identities=9% Similarity=0.063 Sum_probs=31.2
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 171 SACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
....+.|++++|.+.|+.+.......+-...+-..++.+|.+.+++++|...+++.++
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3344555555555555555555544444444555555555555555555555555543
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.43 E-value=0.0023 Score=52.81 Aligned_cols=65 Identities=11% Similarity=0.016 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcH---hHHHHHHHHHhccCChHHHHHHHHHhcCC
Q 046638 162 DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRA---EHYTAIVGLLGRAGFLNEAESFINSMSRN 229 (306)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (306)
+...++.+..+|...|++++|+..|++..+.. |.+. .+|..+..+|...|++++|++.+++....
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46678889999999999999999999988654 3333 35899999999999999999999998863
No 220
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.42 E-value=0.0045 Score=42.80 Aligned_cols=93 Identities=17% Similarity=0.095 Sum_probs=67.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhcCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchH---HHHHHH
Q 046638 202 HYTAIVGLLGRAGFLNEAESFINSMSRN-PG----PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA---IYVLLS 273 (306)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~ 273 (306)
.+-.-+....+.|++++|.+.|+.+..+ |. ...-..++.+|.+.+++++|...+++.++++|.++. ++...+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 3444455666889999999999999875 32 234566889999999999999999999999987543 344444
Q ss_pred HHHhhcCC---------------hhhHHHHHHHHhh
Q 046638 274 NVSKATDC---------------WDDAGDIRTLMYN 294 (306)
Q Consensus 274 ~~~~~~g~---------------~~~a~~~~~~m~~ 294 (306)
.++.+... ..+|..-|+++.+
T Consensus 92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 44444443 5677777777765
No 221
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.41 E-value=0.0037 Score=46.29 Aligned_cols=96 Identities=13% Similarity=0.221 Sum_probs=62.1
Q ss_pred HHHHhc--CcCCchhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHcc--------------
Q 046638 118 KVFSSM--DERDLVSWNSLLLGCAH-----HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA-------------- 176 (306)
Q Consensus 118 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------------- 176 (306)
..|++. ...+..+|..++..|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34566666666666653 467777778888888888888888888888876431
Q ss_pred --CChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCC
Q 046638 177 --GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF 215 (306)
Q Consensus 177 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (306)
.+.+-|++++++|...+.. ||..++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~--Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVM--PDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHhccccH
Confidence 1335566666666665543 366666666666655443
No 222
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.034 Score=42.03 Aligned_cols=201 Identities=13% Similarity=0.044 Sum_probs=102.6
Q ss_pred hHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCC--chhHHHHHHHHHhc
Q 046638 64 TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERD--LVSWNSLLLGCAHH 141 (306)
Q Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~ 141 (306)
.|.....+|....++++|...+.+..+. .+.+...|. ....++.|.-+.+++.+-+ +..|+--...|...
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3444455666667777777766665532 111111111 1122333333333333211 12233344455555
Q ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHh---cCCCCCCcHhHHHHHHHHHhccCChHH
Q 046638 142 GYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN---DASLEPPRAEHYTAIVGLLGRAGFLNE 218 (306)
Q Consensus 142 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (306)
|.++.|-..+++.-+ .....++++|+++|++... .+.....-...+......+.+..++++
T Consensus 105 GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 555555544444321 1223344455555544221 111111123445556667777888887
Q ss_pred HHHHHHHhcC------C-CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCchHHHHHHHHHHhhcCChhhHH
Q 046638 219 AESFINSMSR------N-PGP-SVYKALLSACQVHGNREIAVRSAKRVLD----LWPNDPAIYVLLSNVSKATDCWDDAG 286 (306)
Q Consensus 219 a~~~~~~~~~------~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~a~ 286 (306)
|-..+.+-.. . ++. ..|...|-.+....++..|.++++.-.+ ..|.+..+...|+.+|-. |+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCHHHHH
Confidence 7776655432 1 222 2344555556677788888888888655 455677788888877764 5666665
Q ss_pred HHH
Q 046638 287 DIR 289 (306)
Q Consensus 287 ~~~ 289 (306)
+++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 543
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.35 E-value=0.083 Score=45.76 Aligned_cols=233 Identities=12% Similarity=0.118 Sum_probs=138.7
Q ss_pred hhhhcCChHHHHhhhhhccC-----------cchHHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 046638 5 TYSRCDSSLDFQNVYSSVRT-----------RNQISWNAIIAGFCNLGSG--EQALKCFSEMRQAGIDIDYFTITSIVGA 71 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (306)
-|...|.+++|.++---... -+...++.-=.+|.+-.+. -+.+.-+++++++|-.|+.... ...
T Consensus 565 q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~ 641 (1081)
T KOG1538|consen 565 QYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADV 641 (1081)
T ss_pred hhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHH
Confidence 35567777777665433211 1233344444566665543 3444455677788877877543 345
Q ss_pred hccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc--------------CCchhHHHHHHH
Q 046638 72 IGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE--------------RDLVSWNSLLLG 137 (306)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------------~~~~~~~~l~~~ 137 (306)
|+-.|.+.+|.++|.+ .|.+ |..+.+|.....++.|.+++..... .++.--.+....
T Consensus 642 ~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEm 712 (1081)
T KOG1538|consen 642 FAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEM 712 (1081)
T ss_pred HHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHH
Confidence 6677888888888754 3332 2344555555556666555543321 122112234455
Q ss_pred HHhcCCHHHHHHHHHH------HHhcCCC---ccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHH
Q 046638 138 CAHHGYSREAVQLFEQ------MQKTEIK---PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208 (306)
Q Consensus 138 ~~~~~~~~~a~~~~~~------m~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (306)
+...|+.++|..+.-+ +.+.+.+ .+..+...+..-+-+...+..|-++|..+-+ ...+++
T Consensus 713 LiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----------~ksiVq 781 (1081)
T KOG1538|consen 713 LISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-----------LKSLVQ 781 (1081)
T ss_pred hhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-----------HHHHhh
Confidence 5666777777654321 1222211 2334455555555667778888888887742 245788
Q ss_pred HHhccCChHHHHHHHHHhcC-CCChh-----------hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 209 LLGRAGFLNEAESFINSMSR-NPGPS-----------VYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~-~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
.....+++++|..+-++.++ .|++. -+.-.-.+|.+.|+-.+|.++++++..
T Consensus 782 lHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred heeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 88899999999999998876 24432 122334568889999999999998876
No 224
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.091 Score=46.18 Aligned_cols=112 Identities=18% Similarity=0.130 Sum_probs=83.5
Q ss_pred ccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHH
Q 046638 161 PDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLS 240 (306)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 240 (306)
....+.+--+.-+...|+..+|.++-.+.+ -|+-..|-.-+.++...+++++-+++-+... .+.-|.-.+.
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk------ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe 752 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK------IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVE 752 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC------CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHH
Confidence 344455566667778888888887765553 2588888888999999999998888776655 3667888899
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHH
Q 046638 241 ACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIR 289 (306)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 289 (306)
.|.+.|+.++|.+++-+.-... -...+|.+.|++.+|.+.-
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHH
Confidence 9999999999988876642211 5677888888888887653
No 225
>PRK11906 transcriptional regulator; Provisional
Probab=97.30 E-value=0.011 Score=49.08 Aligned_cols=112 Identities=9% Similarity=0.047 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhcc---------CChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCH
Q 046638 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA---------GFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNR 248 (306)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 248 (306)
+.|..+|.+........|.....|..+..++... ....+|.++.++..+ +.|+.....+..+....+++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~ 354 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA 354 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence 4455566665533333343444444444433221 122344444444443 23444444455555555556
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHH
Q 046638 249 EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTL 291 (306)
Q Consensus 249 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 291 (306)
+.|...|+++..++|+...++...+..+.-.|+.++|.+.+++
T Consensus 355 ~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 355 KVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666655
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.30 E-value=0.053 Score=46.46 Aligned_cols=160 Identities=16% Similarity=0.051 Sum_probs=111.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccH-----HHHHHHHHHHHc----cCChHHHHHHHHHHHhcCCCCCCcH
Q 046638 131 WNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDG-----TTFLVVLSACCH----AGFIDKGLQYFYLMRNDASLEPPRA 200 (306)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 200 (306)
...+++...-.||-+.+++.+.+..+.+ +.-.. ..|+.++..++. ..+.+.|.++++.+.... | +.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P-~s 266 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---P-NS 266 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---C-Cc
Confidence 3445555566799999999998876532 32211 234444444443 456788999999998766 3 44
Q ss_pred hHH-HHHHHHHhccCChHHHHHHHHHhcCC----C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHH-
Q 046638 201 EHY-TAIVGLLGRAGFLNEAESFINSMSRN----P--GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLL- 272 (306)
Q Consensus 201 ~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l- 272 (306)
..| -.-.+.+...|++++|++.|++.... + ....+--+...+.-..++++|.+.|.++.+....+..+|..+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 444 34467778899999999999987652 1 223345566678889999999999999999777666666554
Q ss_pred HHHHhhcCCh-------hhHHHHHHHHhh
Q 046638 273 SNVSKATDCW-------DDAGDIRTLMYN 294 (306)
Q Consensus 273 ~~~~~~~g~~-------~~a~~~~~~m~~ 294 (306)
+.++...|+. ++|.++|.+...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4556778888 888999888764
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.27 E-value=0.0046 Score=47.57 Aligned_cols=109 Identities=12% Similarity=0.103 Sum_probs=84.2
Q ss_pred HHhhhhhcc--CcchHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc-----------
Q 046638 15 FQNVYSSVR--TRNQISWNAIIAGFCNL-----GSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS----------- 76 (306)
Q Consensus 15 A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------- 76 (306)
.++.|...+ ++|-.+|-..+..+... +.++-.-..++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666665 56788888888777654 567777788899999999999999999999876543
Q ss_pred -----chhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh-HHHHHHHHhc
Q 046638 77 -----GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI-NDANKVFSSM 123 (306)
Q Consensus 77 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 123 (306)
+-+-+++++++|...|+.||..+-..|+.++++.+-. .+...+.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2356789999999999999999999999999988763 3333343333
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0076 Score=48.80 Aligned_cols=121 Identities=12% Similarity=0.020 Sum_probs=60.9
Q ss_pred HHHHHHhcCChHHHHHHHHhcCc------------------CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHH
Q 046638 103 LVFMYAICGAINDANKVFSSMDE------------------RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164 (306)
Q Consensus 103 l~~~~~~~g~~~~a~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 164 (306)
-.+.|.+.|++..|..-|++... .-..+++.+.-++.+.+++.+|+...++.+..+.. |..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chh
Confidence 35568888999999888887542 01223444455555555555555555555444322 444
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHH-HHHHHHHhc
Q 046638 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE-AESFINSMS 227 (306)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~ 227 (306)
....-..++...|+++.|...|+++.+.. |.|-.+-+.|+.+-.+..+..+ ..++|..|.
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~---P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLE---PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555555555555554322 3343444444444333333322 234444443
No 229
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.22 E-value=0.13 Score=45.11 Aligned_cols=240 Identities=13% Similarity=0.035 Sum_probs=144.9
Q ss_pred CcchHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC--ChhhHHH--H--HHHhccccchhhHHHHHHHHHHcCCCcc
Q 046638 24 TRNQISWNAIIAGFCNLGSGEQALKCFSEMRQA-GIDI--DYFTITS--I--VGAIGVISGFKEGKQMHALIFKIGYDSN 96 (306)
Q Consensus 24 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~--~~~~~~~--l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 96 (306)
.|.+..|..|.......-.++-|+..|-+...- |++. ...+..+ + ...-+--|.+++|.++|-++-.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 466777888887777777777777777555331 1110 0000000 0 0111234778888887776665532
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcCcC-----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 046638 97 VFVQNRLVFMYAICGAINDANKVFSSMDER-----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS 171 (306)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 171 (306)
.+..+.+.||+-.+.++++.-... -..+|+.+...+.....|++|.++|..-.. -...+.
T Consensus 766 ------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~e 830 (1189)
T KOG2041|consen 766 ------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIE 830 (1189)
T ss_pred ------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHH
Confidence 466777888888888877764421 235788888888888888888888876421 123456
Q ss_pred HHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHH
Q 046638 172 ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIA 251 (306)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (306)
++.+..++++-..+...+ |.+......+.+++.+.|.-++|.+.|-+-.. |. ..+..|...+++.+|
T Consensus 831 cly~le~f~~LE~la~~L-------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-pk-----aAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTL-------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-PK-----AAVHTCVELNQWGEA 897 (1189)
T ss_pred HHHHHHhhhhHHHHHHhc-------CcccchHHHHHHHHHhhchHHHHHHHHHhccC-cH-----HHHHHHHHHHHHHHH
Confidence 666666666655554444 33555677888899999999998888766543 22 235667777777777
Q ss_pred HHHHHHHhhcCCCch-----------HHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 252 VRSAKRVLDLWPNDP-----------AIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 252 ~~~~~~~~~~~p~~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
.++.++..-..-... .-..--+..+.+.|+.=+|.+++.+|.+
T Consensus 898 velaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 898 VELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 776654321000000 0112234556677777777777777754
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.16 E-value=0.011 Score=41.77 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046638 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189 (306)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (306)
....++..+...|++++|..+.+.+....+- +...+..++.++...|+...|.+.|+++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444555566667777777777766665433 5666666777777777777777666554
No 231
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.06 E-value=0.14 Score=42.56 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=52.7
Q ss_pred hhhHHHHHHH--HHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 232 PSVYKALLSA--CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 232 ~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
...-|.+.++ +..+|++.++.-.-.-..+..| ++.+|..++.+.....++++|..++..+..
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 3345666666 6678999999988888888999 899999999999999999999999987753
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.06 E-value=0.055 Score=37.94 Aligned_cols=125 Identities=16% Similarity=0.198 Sum_probs=71.3
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHH
Q 046638 66 TSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145 (306)
Q Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 145 (306)
..++..+.+.+.......+++.+.+.+. .+...++.++..|++.+ .++..+.++. ..+.......+..|.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 3455555556667777777777776653 46667777777777653 3444444442 233444455666677777777
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHcc-CChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHh
Q 046638 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHA-GFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLG 211 (306)
Q Consensus 146 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (306)
++.-++.++.. +...+..+... ++++.|.+++.+. .++..|..++..+.
T Consensus 87 ~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~--------~~~~lw~~~~~~~l 136 (140)
T smart00299 87 EAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ--------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC--------CCHHHHHHHHHHHH
Confidence 77777766521 11122222223 6677777766542 14556666666554
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.082 Score=41.29 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=22.7
Q ss_pred HccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 174 CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
...|++.+|...|+...... |.+...-..++.+|...|+.+.|..++..+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 34444444444444444322 11333344444444444444444444444443
No 234
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.02 E-value=0.077 Score=49.07 Aligned_cols=135 Identities=16% Similarity=0.105 Sum_probs=81.9
Q ss_pred HhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHH
Q 046638 108 AICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFY 187 (306)
Q Consensus 108 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (306)
-+.|-+++|+.++.-=.+.....|.+....+.....+++|--.|+..-+ ....+.+|...|+|++|..+..
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHH
Confidence 3334444444443333333334566666666777778888777766522 2345677888888888888877
Q ss_pred HHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 046638 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVL 259 (306)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (306)
++..... .-..+-..|+.-+...+++-+|-++..+....|.. .+..|++...+++|.++.....
T Consensus 990 ql~~~~d---e~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 990 QLSEGKD---ELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hhcCCHH---HHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 6653211 01122256777788888888888888877755333 3445666667777776666554
No 235
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.02 E-value=0.018 Score=39.33 Aligned_cols=53 Identities=9% Similarity=0.144 Sum_probs=38.4
Q ss_pred CCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHh
Q 046638 158 EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLG 211 (306)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (306)
...|+..+..+++.+|+..|++..|.++.+.+.+...+.- ...+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i-~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPI-PKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Confidence 3567778888888888888888888888888877776433 5667777776443
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.01 E-value=0.094 Score=39.82 Aligned_cols=222 Identities=16% Similarity=0.106 Sum_probs=144.6
Q ss_pred cCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhccccchhhHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCChHHHH
Q 046638 40 LGSGEQALKCFSEMRQAGIDI-DYFTITSIVGAIGVISGFKEGKQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDAN 117 (306)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 117 (306)
.+....+...+.......... ....+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 455666666666665543211 2456666666777788888888877777652 23445566677777777888888888
Q ss_pred HHHHhcCc--CCc-hhHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 046638 118 KVFSSMDE--RDL-VSWNSLLL-GCAHHGYSREAVQLFEQMQKTEI--KPDGTTFLVVLSACCHAGFIDKGLQYFYLMRN 191 (306)
Q Consensus 118 ~~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (306)
+.+..... ++. ........ .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 88887765 222 22333333 67788888888888888755322 12233344444446677888888888887775
Q ss_pred cCCCCCC-cHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 046638 192 DASLEPP-RAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG-PSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 192 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 264 (306)
.. +. ....+..+...+...++++.|...+...... |+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 196 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LN---PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hC---cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 44 22 3566777777888888888888888877763 33 334444444445666788888888888887775
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.00 E-value=0.16 Score=43.70 Aligned_cols=151 Identities=13% Similarity=0.030 Sum_probs=72.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcC-CCCCh-----hhHHHHHHHhcc----ccchhhHHHHHHHHHHcCCCccHHHHHH-HH
Q 046638 36 GFCNLGSGEQALKCFSEMRQAG-IDIDY-----FTITSIVGAIGV----ISGFKEGKQMHALIFKIGYDSNVFVQNR-LV 104 (306)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~ 104 (306)
...-.|+-+.+++.+.+..+.+ +.-.. -.|+..+..+.. ..+.+.|.++++.+.+.- |+...|.. -.
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl~~~g 274 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALFLFFEG 274 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHHHHHH
Confidence 3344566666666666554422 11100 123333322222 335566666666666652 34333332 24
Q ss_pred HHHHhcCChHHHHHHHHhcCc-------CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH-HHHcc
Q 046638 105 FMYAICGAINDANKVFSSMDE-------RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS-ACCHA 176 (306)
Q Consensus 105 ~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~ 176 (306)
..+...|++++|++.|++... -....+--++-.+.-..+|++|.+.|.++.+..- .+..+|..+.. ++...
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l 353 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLML 353 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 455566667777766665442 1112333344455566666666666666665422 23333332222 23344
Q ss_pred CCh-------HHHHHHHHHH
Q 046638 177 GFI-------DKGLQYFYLM 189 (306)
Q Consensus 177 ~~~-------~~a~~~~~~~ 189 (306)
|+. ++|.++|.++
T Consensus 354 ~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 354 GREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred ccchhhhhhHHHHHHHHHHH
Confidence 555 5555555543
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.96 E-value=0.16 Score=41.68 Aligned_cols=30 Identities=10% Similarity=-0.083 Sum_probs=20.9
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
+-..+..++.+..-.|+.++|.+..+++..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 445556677777777777777777777765
No 239
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.95 E-value=0.15 Score=41.12 Aligned_cols=220 Identities=10% Similarity=0.008 Sum_probs=133.2
Q ss_pred hcCChHHHHhhhhhccCc------chHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC---CChhhHHHHHHHhcccc
Q 046638 8 RCDSSLDFQNVYSSVRTR------NQISWNAIIAGFCNLGSGEQALKCFSEMRQA--GID---IDYFTITSIVGAIGVIS 76 (306)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~~ 76 (306)
...+.++|+..+.+...+ -..+|..+..+..+.|.+++++..--.-... ... .--..|..+..++.+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777776664432 1234566777888888888776543221110 011 11244555666666666
Q ss_pred chhhHHHHHHHHHHc-CCCc---cHHHHHHHHHHHHhcCChHHHHHHHHhcCc-------C--CchhHHHHHHHHHhcCC
Q 046638 77 GFKEGKQMHALIFKI-GYDS---NVFVQNRLVFMYAICGAINDANKVFSSMDE-------R--DLVSWNSLLLGCAHHGY 143 (306)
Q Consensus 77 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~ 143 (306)
++.+++.+-..-... |..| .-....++..++...+.++++++.|+...+ + ...++-.|.+.|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 666666665554432 1111 123445577778888889999999987653 1 23578889999999999
Q ss_pred HHHHHHHHHHHHh----cCCCccHHHHH-----HHHHHHHccCChHHHHHHHHHHHhcC---CCCCCcHhHHHHHHHHHh
Q 046638 144 SREAVQLFEQMQK----TEIKPDGTTFL-----VVLSACCHAGFIDKGLQYFYLMRNDA---SLEPPRAEHYTAIVGLLG 211 (306)
Q Consensus 144 ~~~a~~~~~~m~~----~~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~ 211 (306)
+++|.-+..+..+ .++.--..-|. -+.-++...|+.-.|.+.-++..+-. +..+........+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 9998877665533 23321111222 33446677888888877776644321 111223445567788899
Q ss_pred ccCChHHHHHHHHHhc
Q 046638 212 RAGFLNEAESFINSMS 227 (306)
Q Consensus 212 ~~~~~~~a~~~~~~~~ 227 (306)
..|+.+.|..-|+...
T Consensus 258 ~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAM 273 (518)
T ss_pred hcccHhHHHHHHHHHH
Confidence 9999999988887654
No 240
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.95 E-value=0.11 Score=39.47 Aligned_cols=219 Identities=16% Similarity=0.099 Sum_probs=160.2
Q ss_pred ccchhhHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHhcCc-----CCchhHHHHHHHHHhcCCHHHHH
Q 046638 75 ISGFKEGKQMHALIFKIGYD-SNVFVQNRLVFMYAICGAINDANKVFSSMDE-----RDLVSWNSLLLGCAHHGYSREAV 148 (306)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~ 148 (306)
.+....+...+......... ............+...+++..+...+..... .....+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45556666666666655432 1356777888889999999999998887652 34456777778888889999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHH-HHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhc
Q 046638 149 QLFEQMQKTEIKPDGTTFLVVLS-ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 149 ~~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (306)
..+.........+. ........ .+...|+++.|...+.+..............+......+...++.+.+...+.+..
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 99999887654432 22222333 78899999999999999855221001134445555555778899999999999988
Q ss_pred CC-CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 228 RN-PG--PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 228 ~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
.. ++ ...+..+...+...++++.|...+.......|.....+..+...+...+..+++...+.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 74 33 566778888889999999999999999999887556666677666677788999988877664
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=96.94 E-value=0.14 Score=42.84 Aligned_cols=158 Identities=11% Similarity=0.086 Sum_probs=106.1
Q ss_pred hhH--HHHHHHHHhc-----CCHHHHHHHHHHHHh-cCCCcc-HHHHHHHHHHHHc---------cCChHHHHHHHHHHH
Q 046638 129 VSW--NSLLLGCAHH-----GYSREAVQLFEQMQK-TEIKPD-GTTFLVVLSACCH---------AGFIDKGLQYFYLMR 190 (306)
Q Consensus 129 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~m~~-~~~~p~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 190 (306)
..| ..++.+.... ...+.|+.+|.+... ....|+ ...|..+..++.. ..+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555554432 235688889998872 233444 3344444433322 234456777777777
Q ss_pred hcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchH-
Q 046638 191 NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPGP-SVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA- 267 (306)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~- 267 (306)
+.+ |.|+.+...+..++.-.++++.|..+|++... .||. ..|......+.-.|+.++|.+.+++++++.|....
T Consensus 332 eld---~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DIT---TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcC---CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 655 45888888888888889999999999999876 4654 45555666678899999999999999999997432
Q ss_pred -HHHHHHHHHhhcCChhhHHHHHH
Q 046638 268 -IYVLLSNVSKATDCWDDAGDIRT 290 (306)
Q Consensus 268 -~~~~l~~~~~~~g~~~~a~~~~~ 290 (306)
.....+..|...+ .++|+++|-
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHh
Confidence 3333344566554 677777763
No 242
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.92 E-value=0.015 Score=39.32 Aligned_cols=90 Identities=22% Similarity=0.153 Sum_probs=58.1
Q ss_pred HHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChh----hHHHHHHHHHhc
Q 046638 172 ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPS----VYKALLSACQVH 245 (306)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~l~~~~~~~ 245 (306)
+.+..|+.+.|++.|.+... +.|..+..||.-.+++.-.|+.++|++=+++..+- +... .|..-...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 55677777777777777664 22456677777777777777777777777766542 1111 222233346667
Q ss_pred CCHHHHHHHHHHHhhcCCC
Q 046638 246 GNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 246 ~~~~~a~~~~~~~~~~~p~ 264 (306)
|+.+.|..-|+.+-++...
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 7777777777777776654
No 243
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.84 E-value=0.22 Score=41.40 Aligned_cols=255 Identities=11% Similarity=0.079 Sum_probs=152.9
Q ss_pred hhhhcCChHHHHhhhhhccC---cc------hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH--hc
Q 046638 5 TYSRCDSSLDFQNVYSSVRT---RN------QISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGA--IG 73 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~---~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 73 (306)
.+.+.+++++|.++|.++-. .+ ...-+.++++|.. ++.+.....+..+.+. .| ...|..+..+ +.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 35688999999999998743 12 2233456777754 4566666666666553 24 3344444443 35
Q ss_pred cccchhhHHHHHHHHHHc--CCCc------------cHHHHHHHHHHHHhcCChHHHHHHHHhcCc--------CCchhH
Q 046638 74 VISGFKEGKQMHALIFKI--GYDS------------NVFVQNRLVFMYAICGAINDANKVFSSMDE--------RDLVSW 131 (306)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~ 131 (306)
+.+++++|.+.+...... +..| |-..-+..+.++...|+++++..+++++.. -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 789999999988877655 3222 222335677889999999999999998874 367778
Q ss_pred HHHHHHHHhc---------------CCHHHHHHHHHHHHhc------CCCccHHHHHHHHHHHHccC--ChHHHHHHHHH
Q 046638 132 NSLLLGCAHH---------------GYSREAVQLFEQMQKT------EIKPDGTTFLVVLSACCHAG--FIDKGLQYFYL 188 (306)
Q Consensus 132 ~~l~~~~~~~---------------~~~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~ 188 (306)
+.++-.+.+. .-++.+.-+.++|... .+.|....+..++....-.. +..--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 7755444332 1133444444444332 23455555555555443221 22223333433
Q ss_pred HHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-------CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 046638 189 MRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-------PGPSVYKALLSACQVHGNREIAVRSAKRVLDL 261 (306)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 261 (306)
... .-+.|...-+...+...+.. +.+++..+.+.+... .-..++..++....+.++..+|...+.-...+
T Consensus 251 We~-~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 251 WEN-FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHh-hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 322 23334333334444444444 556666555554321 23456788888899999999999999988888
Q ss_pred CCCch
Q 046638 262 WPNDP 266 (306)
Q Consensus 262 ~p~~~ 266 (306)
+|+..
T Consensus 328 dp~~s 332 (549)
T PF07079_consen 328 DPRIS 332 (549)
T ss_pred CCcch
Confidence 88653
No 244
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.79 E-value=0.31 Score=42.47 Aligned_cols=255 Identities=13% Similarity=0.085 Sum_probs=151.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHH---------HHHHHcCCCCChhhHHHHHHHhccccchh--hHHHHHHHHHHcCCCc
Q 046638 27 QISWNAIIAGFCNLGSGEQALKCF---------SEMRQAGIDIDYFTITSIVGAIGVISGFK--EGKQMHALIFKIGYDS 95 (306)
Q Consensus 27 ~~~~~~li~~~~~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~ 95 (306)
...+.+-+-.|...|.+++|.++- +.+... ..+.-.++..-.+|.+..+.. +.+.-++++.+.|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 334445555677788888776542 111111 122334444555666555433 3344456777888777
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCc--hhHHH-----HHHHHHhcCCHHHHHHHHHHHHh--cCC-CccHHH
Q 046638 96 NVFVQNRLVFMYAICGAINDANKVFSSMDERDL--VSWNS-----LLLGCAHHGYSREAVQLFEQMQK--TEI-KPDGTT 165 (306)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~-----l~~~~~~~~~~~~a~~~~~~m~~--~~~-~p~~~~ 165 (306)
+... +...++-.|++.+|-++|.+--..+. ..|+- +.+-+...|..++-..+.++--+ ..+ .|
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---- 706 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---- 706 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc----
Confidence 7643 45667778999999999987654221 12221 23344555555554444433211 111 12
Q ss_pred HHHHHHHHHccCChHHHHHHHHH------HHhc-CCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHH
Q 046638 166 FLVVLSACCHAGFIDKGLQYFYL------MRND-ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKAL 238 (306)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~------~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l 238 (306)
......+...|+.++|..+.-. +.+- ..+...+..+...+...+.+...+.-|.++|.+|.+ ...+
T Consensus 707 -kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------~ksi 779 (1081)
T KOG1538|consen 707 -KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------LKSL 779 (1081)
T ss_pred -HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc------HHHH
Confidence 1233445566777666654311 1110 111223566677777888888889999999999875 3346
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCchH----------HHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 046638 239 LSACQVHGNREIAVRSAKRVLDLWPNDPA----------IYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 297 (306)
++.....+++.+|..+.++.-+..|+--. -|.-.-.+|.+.|+..+|.++++++....+
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 77788899999999998887776554211 233445678899999999999988865443
No 245
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.79 E-value=0.36 Score=43.20 Aligned_cols=116 Identities=9% Similarity=-0.028 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcH-hHHHHHHHHHhccCChHHHHHHHHHhcCC-CChhhHHHHHHHHHhcCCHHHHHHH
Q 046638 177 GFIDKGLQYFYLMRNDASLEPPRA-EHYTAIVGLLGRAGFLNEAESFINSMSRN-PGPSVYKALLSACQVHGNREIAVRS 254 (306)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 254 (306)
.+.+.|...+........+.+... .+...++......+...++...++..... .+......-+......++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 344566666665544333322111 11222322222222245555555554332 2333333334444466666666666
Q ss_pred HHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHH
Q 046638 255 AKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLM 292 (306)
Q Consensus 255 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 292 (306)
+..|-........-..-+++++...|+.++|..+|+..
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 65554433334455566666666666666666666655
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.78 E-value=0.16 Score=38.97 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=39.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCc---hHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 238 LLSACQVHGNREIAVRSAKRVLDLWPND---PAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
+..-|.+.|.+..|..-++++++.-|+. ...+..+..+|...|-.++|.+.-.-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3455778888888888888888865543 3356667778888888888777665543
No 247
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.77 E-value=0.05 Score=43.65 Aligned_cols=222 Identities=11% Similarity=0.021 Sum_probs=122.3
Q ss_pred HHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHhccccchhhHHHHHHH----HHHcC-CCccHHHHHHHHHHHHh
Q 046638 37 FCNLGSGEQALKCFSEMRQAG--IDIDYFTITSIVGAIGVISGFKEGKQMHAL----IFKIG-YDSNVFVQNRLVFMYAI 109 (306)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~ 109 (306)
+.++.+.++|+..|.+-+.+- ..-.-.++..+..+.++.|.+++++..--. ..+.. -..-...|..+...+-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888887765531 111234566666777777777766543322 11111 00112344455555555
Q ss_pred cCChHHHHHHHHhcCc-C-------CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCccHHHHHHHHHHHHcc
Q 046638 110 CGAINDANKVFSSMDE-R-------DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-----IKPDGTTFLVVLSACCHA 176 (306)
Q Consensus 110 ~g~~~~a~~~~~~~~~-~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~ 176 (306)
.-++.+++.+-+.-.. | .-....++..++...+.++++++.|+...... .......+..+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 5566666655544332 1 11234446666777777788888777765421 122345677777777777
Q ss_pred CChHHHHHHHHHHHh---cCCCCCCcHh------HHHHHHHHHhccCChHHHHHHHHHhcC----CCChhh----HHHHH
Q 046638 177 GFIDKGLQYFYLMRN---DASLEPPRAE------HYTAIVGLLGRAGFLNEAESFINSMSR----NPGPSV----YKALL 239 (306)
Q Consensus 177 ~~~~~a~~~~~~~~~---~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~----~~~l~ 239 (306)
.++++|.-+..+..+ ...+. +.. +...+.-++...|+...|.+..++..+ ..|..+ ...+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~--d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK--DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC--chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 777777776655433 22221 211 112233455566666666666665543 233333 34455
Q ss_pred HHHHhcCCHHHHHHHHHHHhh
Q 046638 240 SACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~ 260 (306)
+.|...|+.+.|+.-|+++..
T Consensus 254 DIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHhcccHhHHHHHHHHHHH
Confidence 667777777777777777665
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.77 E-value=0.087 Score=44.64 Aligned_cols=158 Identities=13% Similarity=0.046 Sum_probs=87.8
Q ss_pred HHHhcCChHHHHHHHH--HHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 046638 36 GFCNLGSGEQALKCFS--EMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 36 ~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (306)
...-.++++++.++.. ++.. .+ +..-.+.++.-+.+.|-.+.|+++-. |+. .-.+...+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCH
Confidence 3445677777666654 1111 11 23345666666777777777766532 221 123445667777
Q ss_pred HHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 046638 114 NDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193 (306)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (306)
+.|.++.++.. +...|..|.....+.|+++-|.+.|.+.. -+..++-.|.-.|+.+.-.++.+.....+
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 77777766555 44578888888888888888887777652 14455556666777766666666655444
Q ss_pred CCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhc
Q 046638 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (306)
. ++.-..++.-.|+.++..+++.+..
T Consensus 404 ~--------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 D--------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp ---------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred C--------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2 3445555556677777777766554
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.18 Score=39.43 Aligned_cols=117 Identities=9% Similarity=-0.006 Sum_probs=52.2
Q ss_pred HHhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHH
Q 046638 107 YAICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGL 183 (306)
Q Consensus 107 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 183 (306)
....|++.+|...|+...+ .+...--.++.+|...|+.+.|..++..+-...-.........-+..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 4445566666665555543 2333444455556666666666666655432211111111111222333333333322
Q ss_pred HHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhc
Q 046638 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (306)
.+-.+.-. .|.|...-..+...+...|+.+.|.+.+-.+.
T Consensus 224 ~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 224 DLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22222221 12355555555555666666665555444443
No 250
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.76 E-value=0.0035 Score=31.59 Aligned_cols=32 Identities=31% Similarity=0.336 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 046638 233 SVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 264 (306)
.+|..+...+...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667777778888888888888888887775
No 251
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.61 E-value=0.1 Score=44.21 Aligned_cols=155 Identities=10% Similarity=0.020 Sum_probs=102.6
Q ss_pred hhhcCChHHHHhhhh--hc-cCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHH
Q 046638 6 YSRCDSSLDFQNVYS--SV-RTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGK 82 (306)
Q Consensus 6 ~~~~g~~~~A~~~~~--~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (306)
..-.|+++++.++.+ ++ +.-.....+.++..+-+.|..+.|+++-..-.. -.....+.|+++.|.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIAL 338 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHH
Confidence 345678888655554 12 222355588899999999999999877543221 233445788988887
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc
Q 046638 83 QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPD 162 (306)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 162 (306)
++.++ ..+...|..|.....+.|+++-|++.|++..+ |..|+-.|.-.|+.+.-.++.+.....|-
T Consensus 339 ~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--- 404 (443)
T PF04053_consen 339 EIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD--- 404 (443)
T ss_dssp HHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC---
Confidence 76433 34778999999999999999999999999874 55677788888998887777777666542
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHH
Q 046638 163 GTTFLVVLSACCHAGFIDKGLQYFYLM 189 (306)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (306)
++....++.-.|+.++..+++...
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 455556666778888877776543
No 252
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.61 E-value=0.0065 Score=30.51 Aligned_cols=32 Identities=31% Similarity=0.322 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 046638 234 VYKALLSACQVHGNREIAVRSAKRVLDLWPND 265 (306)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 265 (306)
.|..+...+...|++++|++.|++++++.|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556667777777777777777777777753
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.16 Score=40.50 Aligned_cols=156 Identities=12% Similarity=-0.018 Sum_probs=95.1
Q ss_pred HhcCChHHHHHHHHhcCc---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCccHHHH--HHHHHHHHccCChHH
Q 046638 108 AICGAINDANKVFSSMDE---RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT-EIKPDGTTF--LVVLSACCHAGFIDK 181 (306)
Q Consensus 108 ~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~--~~l~~~~~~~~~~~~ 181 (306)
...|++.+|-..++++.+ .|..+++--=.+|...|+.+.-...++++... +......+| ....-++...|-+++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 345667777777777664 35666776677778888888777777777543 211112223 233334556788888
Q ss_pred HHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC------CChhhHHHHHHHHHhcCCHHHHHHHH
Q 046638 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN------PGPSVYKALLSACQVHGNREIAVRSA 255 (306)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~ 255 (306)
|.+.-++..+-+ +.|..+..++...+--.|++.++.++..+-... .-..-|....-.+...+.++.|+++|
T Consensus 194 AEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 888777776544 345666666777777778888888877766542 11112333333355667888888888
Q ss_pred HHHhh--cCCCch
Q 046638 256 KRVLD--LWPNDP 266 (306)
Q Consensus 256 ~~~~~--~~p~~~ 266 (306)
++-+- +..+|.
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 65432 444444
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.59 E-value=0.077 Score=36.01 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=52.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHH---HHHHHHHHHHhcCC
Q 046638 36 GFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVF---VQNRLVFMYAICGA 112 (306)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 112 (306)
+++..|+.+.|++.|.+.+.. .+.....||.-..++.-+|+.++|++-+++.++..-..+.. .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456667777777777766654 23455667777777766777777777666666542222322 23333445666677
Q ss_pred hHHHHHHHHhcC
Q 046638 113 INDANKVFSSMD 124 (306)
Q Consensus 113 ~~~a~~~~~~~~ 124 (306)
.+.|..-|+..-
T Consensus 131 dd~AR~DFe~AA 142 (175)
T KOG4555|consen 131 DDAARADFEAAA 142 (175)
T ss_pred hHHHHHhHHHHH
Confidence 777766666543
No 255
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.57 E-value=0.058 Score=38.58 Aligned_cols=136 Identities=12% Similarity=0.110 Sum_probs=88.1
Q ss_pred cchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHhccccchhhHHHHHHHHHHcCCCccHH---HH
Q 046638 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF-TITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVF---VQ 100 (306)
Q Consensus 25 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 100 (306)
.+...|..-++ +.+.++.++|+..|..+.+.|...=+. .-........+.|+-..|...|.++-+....|-.. ..
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34455655554 567788899999999988876422111 11112234567888999999999888765444332 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCcC----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 046638 101 NRLVFMYAICGAINDANKVFSSMDER----DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP 161 (306)
Q Consensus 101 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 161 (306)
-.-...+...|.+++...-.+.+..+ ....-.+|.-+-.+.|++..|..+|..+......|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 11233466778888888888777642 22345667777788999999999999887644444
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.53 E-value=0.41 Score=40.47 Aligned_cols=99 Identities=13% Similarity=0.178 Sum_probs=68.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CCh--hhHHHHHHHH
Q 046638 167 LVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGP--SVYKALLSAC 242 (306)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~--~~~~~l~~~~ 242 (306)
..+..++.+.|+.++|.+.+.++.+..... .+..+...|+.++...+.+.++..++.+-.+. |.. ..|+..+-..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~-~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNL-DNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCcc-chhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 345667778999999999999998755321 25667889999999999999999999887642 333 3455544333
Q ss_pred HhcCC---------------HHHHHHHHHHHhhcCCCch
Q 046638 243 QVHGN---------------REIAVRSAKRVLDLWPNDP 266 (306)
Q Consensus 243 ~~~~~---------------~~~a~~~~~~~~~~~p~~~ 266 (306)
...++ -..|.+.+.++.+.+|..+
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 22222 1345678888888777544
No 257
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.51 E-value=0.079 Score=36.26 Aligned_cols=51 Identities=10% Similarity=-0.007 Sum_probs=40.8
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHcc
Q 046638 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQK-TEIKPDGTTFLVVLSACCHA 176 (306)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~ 176 (306)
|+.....+++.+|+.+|++..|+++.+...+ .+++.+..+|..|++-+...
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 7788889999999999999999999988754 56666778888888765443
No 258
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.43 E-value=0.37 Score=40.19 Aligned_cols=144 Identities=12% Similarity=0.117 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHH
Q 046638 27 QISWNAIIAGFCNLGSGEQALKCFSEMRQAG-IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105 (306)
Q Consensus 27 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (306)
+..|..++++-.+..-++.|..+|-++.+.+ +.++...++..+..+ ..|+...|..+|+.-...-.. +...-+-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPD-STLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 5567788888888888888999999888887 567777778777755 467888888888876654322 2333345666
Q ss_pred HHHhcCChHHHHHHHHhcCc---CC--chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 046638 106 MYAICGAINDANKVFSSMDE---RD--LVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC 174 (306)
Q Consensus 106 ~~~~~g~~~~a~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 174 (306)
.+...++-+.|..+|+...+ .+ ...|..+|..-.+-|+...+..+=++|... -|...+...+..-|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 77788888888888886553 22 457888888888888888888777777654 445544444444443
No 259
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.34 E-value=0.29 Score=36.63 Aligned_cols=160 Identities=11% Similarity=0.049 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHH
Q 046638 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208 (306)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (306)
.+||-|.-.+...|+++.|.+.|+...+.++.-+-...|.-+ ++.--|++.-|.+-+...-......| -...|.-+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DP-fR~LWLYl~- 176 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDP-FRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCCh-HHHHHHHHH-
Confidence 467777777777777887777777776665442222222222 33345677766665555444332222 222222221
Q ss_pred HHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-------hHHHHHHHHHHhhcCC
Q 046638 209 LLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND-------PAIYVLLSNVSKATDC 281 (306)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 281 (306)
...-++.+|..-+.+--...+...|...|-.+.- |++. ...+++++.....++ ..+|..|+.-+...|+
T Consensus 177 --E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 2333555565544333323344444433333211 1111 122333333322221 3467777777888888
Q ss_pred hhhHHHHHHHHhhc
Q 046638 282 WDDAGDIRTLMYNR 295 (306)
Q Consensus 282 ~~~a~~~~~~m~~~ 295 (306)
.++|..+|+-....
T Consensus 253 ~~~A~~LfKLaian 266 (297)
T COG4785 253 LDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777655443
No 260
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.47 Score=42.57 Aligned_cols=180 Identities=10% Similarity=0.061 Sum_probs=114.4
Q ss_pred hhHHHHHHHhccccchhhHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHh
Q 046638 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNV--FVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH 140 (306)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 140 (306)
.+...-+..+.+...++-|..+- ...+.+++. ......++.+.+.|++++|...|-+...--.. ..++.-|..
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLd 409 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLD 409 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcC
Confidence 34555666666777777776653 334433332 33444455667789999998888776532111 125666677
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHH
Q 046638 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220 (306)
Q Consensus 141 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (306)
..+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+... .|...- + ....+..+.+.+-.++|.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~f-d---~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFF-D---VETALEILRKSNYLDEAE 483 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceee-e---HHHHHHHHHHhChHHHHH
Confidence 77778888888888888876 55556678889999999888777765543 221110 2 345666777778888888
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 221 SFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258 (306)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (306)
.+-.+... +...... .+-..+++++|+++++.+
T Consensus 484 ~LA~k~~~--he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK--HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc--CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 77766654 2222222 245678899998887753
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.11 Score=41.30 Aligned_cols=161 Identities=12% Similarity=-0.023 Sum_probs=114.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC-CCCCcHhHHHHHHHHHhccCChH
Q 046638 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDAS-LEPPRAEHYTAIVGLLGRAGFLN 217 (306)
Q Consensus 139 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 217 (306)
-..|++-+|-..++++.+.- +.|...+.-.=.+|...|+.+.-...++++...-. ..|-...+...+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35688888888888888763 44777888888899999999998888888876522 11212233334455667899999
Q ss_pred HHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc----hHHHHHHHHHHhhcCChhhHHHHHHH
Q 046638 218 EAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPND----PAIYVLLSNVSKATDCWDDAGDIRTL 291 (306)
Q Consensus 218 ~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 291 (306)
+|++.-++...- .|...-.+..+.+-..|+..++.++..+-....... ..-|...+-.+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999999988763 444555667777888999999999888766543321 22456677788888999999999975
Q ss_pred HhhcCCCCC
Q 046638 292 MYNRGIRKK 300 (306)
Q Consensus 292 m~~~~~~~~ 300 (306)
=.-..+..+
T Consensus 273 ei~k~l~k~ 281 (491)
T KOG2610|consen 273 EIWKRLEKD 281 (491)
T ss_pred HHHHHhhcc
Confidence 443334333
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.20 E-value=0.65 Score=39.32 Aligned_cols=164 Identities=15% Similarity=0.030 Sum_probs=90.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHH--hc
Q 046638 33 IIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYA--IC 110 (306)
Q Consensus 33 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~ 110 (306)
+|.-.-+..+.+.-++.-.+.++ +.||..+.-.++ +-.......++.+++++..+.|-. . +..... ..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~---lg~s~~~~~~ 243 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----S---LGKSQFLQHH 243 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----h---hchhhhhhcc
Confidence 44444466666776777777666 345543332222 222355678888899888876521 0 000000 01
Q ss_pred CChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046638 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKP-DGTTFLVVLSACCHAGFIDKGLQYFYLM 189 (306)
Q Consensus 111 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (306)
|..-+ ....+-..+-..+-..+..+.-+.|+.++|.+.+++|.+....- .......|+.++...+.+.++..++.+.
T Consensus 244 g~~~e--~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 244 GHFWE--AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred cchhh--hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 11100 01111111223333456677778899999999999887653322 3345677888899999999988888886
Q ss_pred HhcCCCCCCcHhHHHHHHHH
Q 046638 190 RNDASLEPPRAEHYTAIVGL 209 (306)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~ 209 (306)
.+.. .+..-..+|+..+-.
T Consensus 322 dDi~-lpkSAti~YTaALLk 340 (539)
T PF04184_consen 322 DDIS-LPKSATICYTAALLK 340 (539)
T ss_pred cccc-CCchHHHHHHHHHHH
Confidence 4322 212234455554433
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.18 E-value=0.41 Score=36.79 Aligned_cols=56 Identities=11% Similarity=-0.008 Sum_probs=27.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHhccccchhhHHHHHHHHHHcC
Q 046638 37 FCNLGSGEQALKCFSEMRQAGI--DIDYFTITSIVGAIGVISGFKEGKQMHALIFKIG 92 (306)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 92 (306)
-.+.|++++|.+.|+.+...-+ +-...+...++-++.+.++++.|....++..+.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 3455566666666655554321 1112333334444555555555555555555443
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.17 E-value=1.2 Score=41.92 Aligned_cols=84 Identities=13% Similarity=0.035 Sum_probs=56.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhh--HHHHHHHHH
Q 046638 166 FLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--YKALLSACQ 243 (306)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~l~~~~~ 243 (306)
|......+...+.+++|.-.|+..-+ ...-+.+|..+|++.+|+.+..++....+... -..|+..+.
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK-----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc-----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 33344445567778888777766521 23456778888899999988888875433322 255777788
Q ss_pred hcCCHHHHHHHHHHHhh
Q 046638 244 VHGNREIAVRSAKRVLD 260 (306)
Q Consensus 244 ~~~~~~~a~~~~~~~~~ 260 (306)
..++.-+|-++..+...
T Consensus 1011 e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HcccchhHHHHHHHHhc
Confidence 88888888877776554
No 265
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.15 E-value=0.041 Score=43.04 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 235 YKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
+..++..+...|+.+.+...+++.+..+|-+...|..++.+|.+.|+...|+..|+.+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555443
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.11 E-value=0.53 Score=37.45 Aligned_cols=159 Identities=9% Similarity=-0.027 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHH
Q 046638 129 VSWNSLLLGCAHHGYSR---EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTA 205 (306)
Q Consensus 129 ~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 205 (306)
.+...++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+.+.+.+.+|........ ..+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e---~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE---SNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc---chHHH
Confidence 35666777777776644 455566666444332 234455556677778888888888888887544222 22344
Q ss_pred HHHHH---hccCChHHHHHHHHHhcC-C--CChh-hHH-HHHHH-H--HhcCC------HHHHHHHHHHHhh--cCCCch
Q 046638 206 IVGLL---GRAGFLNEAESFINSMSR-N--PGPS-VYK-ALLSA-C--QVHGN------REIAVRSAKRVLD--LWPNDP 266 (306)
Q Consensus 206 l~~~~---~~~~~~~~a~~~~~~~~~-~--~~~~-~~~-~l~~~-~--~~~~~------~~~a~~~~~~~~~--~~p~~~ 266 (306)
++..+ .... ...|...++.+.. + |... ... .++.- + ...++ .+....+++.+.+ ..|-++
T Consensus 161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 44433 3332 3445555544433 1 3332 111 11111 1 11111 3344444443333 233233
Q ss_pred HH-------HHHHHHHHhhcCChhhHHHHHHHH
Q 046638 267 AI-------YVLLSNVSKATDCWDDAGDIRTLM 292 (306)
Q Consensus 267 ~~-------~~~l~~~~~~~g~~~~a~~~~~~m 292 (306)
.+ ...-+..+.+.+++++|.+.|+--
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 22 222355677789999999998743
No 267
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.05 E-value=0.052 Score=39.82 Aligned_cols=104 Identities=12% Similarity=0.019 Sum_probs=63.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCCCCC--cHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC-hhhHHHHHHHHHh
Q 046638 169 VLSACCHAGFIDKGLQYFYLMRNDASLEPP--RAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG-PSVYKALLSACQV 244 (306)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~l~~~~~~ 244 (306)
=.+-+...|++++|..-|....+.....+. ....|..-..++.+.+.++.|+.-..+.+.- |. ......-..+|-+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 345567788888888888887765432111 1233444555677777888877777666542 21 1122223445777
Q ss_pred cCCHHHHHHHHHHHhhcCCCchHHHHHH
Q 046638 245 HGNREIAVRSAKRVLDLWPNDPAIYVLL 272 (306)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l 272 (306)
...+++|+.-|+++++..|.....--..
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 7788888888888888888654443333
No 268
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.04 E-value=0.39 Score=35.27 Aligned_cols=133 Identities=10% Similarity=0.021 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHH--HHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHH
Q 046638 129 VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL--VVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAI 206 (306)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 206 (306)
..|..++.... .+.+ +.....+++..........++. .+...+...|++++|...++..........-...+-..|
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 34555555443 2333 4444455554443221112222 233455667777777777766553221100011112234
Q ss_pred HHHHhccCChHHHHHHHHHhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 046638 207 VGLLGRAGFLNEAESFINSMSRNP-GPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263 (306)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 263 (306)
.......|.+++|+..++....+. .......-.+.+...|+-++|..-|++.+...+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 455666777777777777666431 122233344557777777777777777777654
No 269
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.04 E-value=0.35 Score=34.77 Aligned_cols=133 Identities=15% Similarity=0.111 Sum_probs=85.1
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHh-HHH
Q 046638 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT-TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAE-HYT 204 (306)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~ 204 (306)
....|..-+. +.+.+..++|+.-|..+.+.|...-.. ..........+.|+...|...|+++-.....+.+... .-.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3344544444 467788999999999998877542222 2233445667889999999999988765543211101 111
Q ss_pred HHHHHHhccCChHHHHHHHHHhcCCCCh--h-hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 205 AIVGLLGRAGFLNEAESFINSMSRNPGP--S-VYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
.-.-.+...|.++......+.+....++ . .-..|.-+-.+.|++..|...|.++..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1223456788888888888777654232 2 223455566788999999999988877
No 270
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.4 Score=35.18 Aligned_cols=88 Identities=11% Similarity=-0.017 Sum_probs=38.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccC
Q 046638 137 GCAHHGYSREAVQLFEQMQKTEIKPD--GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214 (306)
Q Consensus 137 ~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 214 (306)
.+...+++++|...++.........+ ...-..|.......|.+|+|+..++.....+- .......-.+.+...|
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w----~~~~~elrGDill~kg 173 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW----AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH----HHHHHHHhhhHHHHcC
Confidence 34555555555555555432211100 01111233344455555555555554443221 1222333345555555
Q ss_pred ChHHHHHHHHHhcC
Q 046638 215 FLNEAESFINSMSR 228 (306)
Q Consensus 215 ~~~~a~~~~~~~~~ 228 (306)
+-++|..-|++...
T Consensus 174 ~k~~Ar~ay~kAl~ 187 (207)
T COG2976 174 DKQEARAAYEKALE 187 (207)
T ss_pred chHHHHHHHHHHHH
Confidence 55555555555544
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.99 E-value=0.043 Score=29.53 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046638 131 WNSLLLGCAHHGYSREAVQLFEQMQKT 157 (306)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~m~~~ 157 (306)
|..+...|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 272
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.96 E-value=0.34 Score=33.91 Aligned_cols=127 Identities=13% Similarity=0.116 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHH
Q 046638 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLL 210 (306)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (306)
...++..+...+.+.....+++.+...+. .+....+.++..|++.+. .+....+.. .. +..-....+..|
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~------~~yd~~~~~~~c 79 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--KS------NHYDIEKVGKLC 79 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--cc------ccCCHHHHHHHH
Confidence 44566666667777777777777776653 455667777777776533 333344332 11 112234466777
Q ss_pred hccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhh
Q 046638 211 GRAGFLNEAESFINSMSRNPGPSVYKALLSACQVH-GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278 (306)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 278 (306)
.+.+.++++.-++.++.. +...+..+... ++++.|.+++.+ +.++..|..++..+..
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 777777777777777653 23334444444 677777777665 2345566666665543
No 273
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.95 E-value=0.3 Score=33.33 Aligned_cols=141 Identities=11% Similarity=0.106 Sum_probs=80.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChH
Q 046638 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLN 217 (306)
Q Consensus 138 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (306)
+.-.|..++..++..+..... +..-++-++.-....-+=+-..++++.+-+-..+ ..+|+..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi---------------s~C~NlK 73 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI---------------SKCGNLK 73 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G---------------GG-S-TH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc---------------hhhcchH
Confidence 344677888888887776542 3334444444444444444455555555433221 1344444
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 046638 218 EAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 297 (306)
.....+-.+. .........+..+...|+-+.-.+++..+.+.+..+|.....++.+|.+.|+..++-+++++.-++|+
T Consensus 74 rVi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 74 RVIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 4444444333 23344555677788888888888888888765445788888999999999999999999988888876
Q ss_pred C
Q 046638 298 R 298 (306)
Q Consensus 298 ~ 298 (306)
.
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 274
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.94 E-value=0.39 Score=38.43 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHhcc--c----cchhhHHHHHHHHHHcC
Q 046638 43 GEQALKCFSEMRQAGIDIDYFTITSIVGAIGV--I----SGFKEGKQMHALIFKIG 92 (306)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~ 92 (306)
+++.+.+++.|.+.|+.-+..+|.+....... . ....+|..+|+.|++..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 34556666677777766666555443222211 1 13455566666666543
No 275
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=1.3 Score=40.06 Aligned_cols=172 Identities=12% Similarity=0.040 Sum_probs=112.8
Q ss_pred hhhhhhcCChHHHHhhhhhccCcch---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchh
Q 046638 3 ILTYSRCDSSLDFQNVYSSVRTRNQ---ISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFK 79 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (306)
++...+..-++-|..+-+.-.-+.. .......+.+.+.|++++|...|-+-... +.|. .++.-|.......
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~Ik 414 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIK 414 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHH
Confidence 4455666666667766665433211 12334455677899999999988776543 3332 3455666777888
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCc-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046638 80 EGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDL-VSWNSLLLGCAHHGYSREAVQLFEQMQKTE 158 (306)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 158 (306)
+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+...+-.. .-....+..+.+.+-.++|..+-.+...
T Consensus 415 nLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-- 491 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-- 491 (933)
T ss_pred HHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc--
Confidence 888899999999976 566667899999999999998888777662111 1234556666666767776665544321
Q ss_pred CCccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046638 159 IKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189 (306)
Q Consensus 159 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (306)
+......+ +-..+++++|++++..+
T Consensus 492 ---he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 492 ---HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred ---CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 22333333 35678899999988765
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.83 E-value=0.85 Score=37.55 Aligned_cols=33 Identities=9% Similarity=0.016 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhh
Q 046638 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKA 278 (306)
Q Consensus 246 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 278 (306)
+..+++...|+++.+..|.....+..++..+.+
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 778888999999999998877777777766555
No 277
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.82 E-value=0.65 Score=36.06 Aligned_cols=244 Identities=15% Similarity=0.191 Sum_probs=137.6
Q ss_pred hcCChHHHHhhhhhccC----cch---HHHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCChhhHHHHHHHhccc
Q 046638 8 RCDSSLDFQNVYSSVRT----RNQ---ISWNAIIAGFCNLGSGEQALKCFSEMRQA---GI--DIDYFTITSIVGAIGVI 75 (306)
Q Consensus 8 ~~g~~~~A~~~~~~~~~----~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~ 75 (306)
+..++++|+.-|+.+.+ ... .....+|..+.+.|++++.+..+.+|+.- .+ .-+..+.+.++..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34578889988887632 223 34456788899999999999999887542 11 12445666676655555
Q ss_pred cchhhHHHHHHHHHHc----C-CCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcC---------------CchhHHHHH
Q 046638 76 SGFKEGKQMHALIFKI----G-YDSNVFVQNRLVFMYAICGAINDANKVFSSMDER---------------DLVSWNSLL 135 (306)
Q Consensus 76 ~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~l~ 135 (306)
.+.+--..+++.-++. . -..--.|-.-|...|...|.+.+..++++++.+. -...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 5555555555433321 0 0011123346788889999999988888887630 124577777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHH-----HccCChHHHHHHHHHHHhcC-CCCCCcHh---HHHH
Q 046638 136 LGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSAC-----CHAGFIDKGLQYFYLMRNDA-SLEPPRAE---HYTA 205 (306)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~-~~~~~~~~---~~~~ 205 (306)
..|....+-..-..+|++..... --|.+... .+++-| .+.|++++|..-|-+.-+.. ....|... -|..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 88888888777778887765322 12333322 334433 46788888765443333221 11112222 2445
Q ss_pred HHHHHhccCC--h--HHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 046638 206 IVGLLGRAGF--L--NEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKR 257 (306)
Q Consensus 206 l~~~~~~~~~--~--~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (306)
|++++.+.|- + .+|. -....|.....+.++.+|.. ++..+-.++++.
T Consensus 278 LANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 278 LANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 5566655541 1 1111 00112555667778888754 444444444443
No 278
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.75 E-value=1 Score=37.76 Aligned_cols=135 Identities=13% Similarity=0.074 Sum_probs=106.0
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHH
Q 046638 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-IKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204 (306)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 204 (306)
.-..+|...+....+..-.+.|..+|-++.+.| +.++...+++++..++ .|+...|..+|+.-.... |.++....
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ 470 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKE 470 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHH
Confidence 445678888888888888999999999999988 6677778888887655 578888999998765544 22333345
Q ss_pred HHHHHHhccCChHHHHHHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 046638 205 AIVGLLGRAGFLNEAESFINSMSRN----PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 264 (306)
..+.-+...++-+.|..+|+....+ .-...|..+|.--..-|+...+..+=+++....|.
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 6777888999999999999976653 22467888998888899999998888888888775
No 279
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.70 E-value=0.018 Score=29.05 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=22.2
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCChHHHH
Q 046638 85 HALIFKIGYDSNVFVQNRLVFMYAICGAINDAN 117 (306)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 117 (306)
|++.++..+. +..+|+.|..+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555565543 6777788888888888877775
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.69 E-value=0.023 Score=29.04 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 235 YKALLSACQVHGNREIAVRSAKRV 258 (306)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~ 258 (306)
|..|...|.+.|++++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555555555555555553
No 281
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=0.74 Score=35.20 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046638 28 ISWNAIIAGFCNLGSGEQALKCFSEMRQ 55 (306)
Q Consensus 28 ~~~~~li~~~~~~~~~~~a~~~~~~~~~ 55 (306)
..|.--..+|....++++|...+.+..+
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3466666788889999999998887764
No 282
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.58 E-value=0.45 Score=32.53 Aligned_cols=62 Identities=8% Similarity=0.060 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 046638 131 WNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDA 193 (306)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (306)
....+..+...|+-++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344556666677777777777766542 23455556667777777777777777777666554
No 283
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.77 Score=34.84 Aligned_cols=51 Identities=6% Similarity=-0.073 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHhcC--C---CCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 046638 214 GFLNEAESFINSMSR--N---PGP---SVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 214 ~~~~~a~~~~~~~~~--~---~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 264 (306)
.++++|+..|++..+ + .+. ..+..+..--...+++.+|+++|++.....-+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456666666665543 1 111 12223333356788999999999998874443
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.51 E-value=0.043 Score=28.01 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 046638 29 SWNAIIAGFCNLGSGEQALKCFSEMR 54 (306)
Q Consensus 29 ~~~~li~~~~~~~~~~~a~~~~~~~~ 54 (306)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36667777777777777777777744
No 285
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.49 E-value=0.99 Score=35.92 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=28.9
Q ss_pred hhhcCChHHHHhhhhhccC------cc------hHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 046638 6 YSRCDSSLDFQNVYSSVRT------RN------QISWNAIIAGFCNLG-SGEQALKCFSEMRQ 55 (306)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~------~~------~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 55 (306)
..+.|+++.|..++.+... |+ ...|| +.......+ +++.|..++++..+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn-~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYN-IGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHH-HHHHHHHcCCChHHHHHHHHHHHH
Confidence 3467888888888877532 21 11233 333344445 77777777766544
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.48 E-value=1.7 Score=38.60 Aligned_cols=253 Identities=16% Similarity=0.144 Sum_probs=121.6
Q ss_pred cCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHhccccchhhHHHHHH
Q 046638 9 CDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGI--DIDYFTITSIVGAIGVISGFKEGKQMHA 86 (306)
Q Consensus 9 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (306)
-|++++|+++|-.+..+|.. |..+.+.|++-...++++.--. +. ..-...|+.+...++....+++|.++|.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777776665532 3344555555555544432100 00 0012345555555555555555555443
Q ss_pred HHH---------------------HcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHH
Q 046638 87 LIF---------------------KIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSR 145 (306)
Q Consensus 87 ~~~---------------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 145 (306)
.-. ...++.+....-.+..++.+.|.-++|.+.|-+...|.. .+..|...++|.
T Consensus 821 ~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQW~ 895 (1189)
T KOG2041|consen 821 YCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQWG 895 (1189)
T ss_pred hccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHHHH
Confidence 311 112333445555666677777777777766666655532 344556666676
Q ss_pred HHHHHHHHHHhcCCCccHHHHH--------------HHHHHHHccCChHHHHHHHHHHHhcC--CCCCCcH----hHHHH
Q 046638 146 EAVQLFEQMQKTEIKPDGTTFL--------------VVLSACCHAGFIDKGLQYFYLMRNDA--SLEPPRA----EHYTA 205 (306)
Q Consensus 146 ~a~~~~~~m~~~~~~p~~~~~~--------------~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~----~~~~~ 205 (306)
+|.++-++.. .|...|.. -.|..+.+.|++-.|-+++.+|.+.. ...|+-. .+..+
T Consensus 896 ~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 896 EAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 6666655432 12222221 11233455666655666665554432 1112111 01111
Q ss_pred -HHHHH----------hccCChHHHHHHHHHhcCC----------CChhhHHHHHHH--HHhcCCHHHHHHHHHHHhh--
Q 046638 206 -IVGLL----------GRAGFLNEAESFINSMSRN----------PGPSVYKALLSA--CQVHGNREIAVRSAKRVLD-- 260 (306)
Q Consensus 206 -l~~~~----------~~~~~~~~a~~~~~~~~~~----------~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~-- 260 (306)
|+.-+ -+.|..++|..+++..... .....|..+|-+ ....|.++.|...--.+..
T Consensus 972 lLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYE 1051 (1189)
T KOG2041|consen 972 LLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYE 1051 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHh
Confidence 11111 1356677777766554321 233445555544 4456777777655433333
Q ss_pred -cCCCchHHHHHHHHHHh
Q 046638 261 -LWPNDPAIYVLLSNVSK 277 (306)
Q Consensus 261 -~~p~~~~~~~~l~~~~~ 277 (306)
.-|+ ...|..|+-+-+
T Consensus 1052 d~lpP-~eiySllALaac 1068 (1189)
T KOG2041|consen 1052 DFLPP-AEIYSLLALAAC 1068 (1189)
T ss_pred hcCCH-HHHHHHHHHHHh
Confidence 3442 345655554433
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.46 E-value=0.27 Score=36.01 Aligned_cols=59 Identities=8% Similarity=0.047 Sum_probs=27.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhcCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 202 HYTAIVGLLGRAGFLNEAESFINSMSRN-----PGPSVYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
.+..++..|.+.|+.++|.+.|.++... .-...+-.++....-.+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444555555555555555555554432 1112233444444455555555555544444
No 288
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.42 E-value=0.3 Score=38.08 Aligned_cols=104 Identities=15% Similarity=0.090 Sum_probs=72.7
Q ss_pred CChhhHHHHHHHhcc-----ccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHH
Q 046638 60 IDYFTITSIVGAIGV-----ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSL 134 (306)
Q Consensus 60 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 134 (306)
-|-.+|...+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+=+-.-... |.+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~----------------nvf 128 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ----------------NVF 128 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH----------------HHH
Confidence 455666666666643 35667677788889999999999999999987655332211 111
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCh
Q 046638 135 LLGCAH-HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179 (306)
Q Consensus 135 ~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 179 (306)
-..+.. -.+-+-+++++++|...|+.||..+-..+++++.+.+-.
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111 123456789999999999999999999999999887753
No 289
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.42 E-value=0.033 Score=27.85 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 046638 234 VYKALLSACQVHGNREIAVRSAKRVLDLWP 263 (306)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 263 (306)
+|..+...|...|++++|...|++.++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566667777777777777777777666
No 290
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.23 E-value=0.77 Score=33.10 Aligned_cols=133 Identities=11% Similarity=0.043 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcC
Q 046638 47 LKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDER 126 (306)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 126 (306)
.++++.+.+.+++|+...+..++..+.+.|++.. +..+++.++-+|.......+-.+. +....+.++--.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3444555566666776777777777766666543 333344444444333332221111 1222233332223222
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046638 127 DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189 (306)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (306)
=...+..++..+...|++-+|+.+.+...... ......++.+..+.++...-..+++-.
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22234445566666677777766665542211 111233455555555554444444333
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.21 E-value=1.5 Score=36.18 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 234 VYKALLSACQVHGNREIAVRSAKRVLDLWP----NDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
+|..+...+.+.|.++.|...+.++....+ ..+.....-+......|+..+|...+++..+
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445555555555555554444221 1233334444444445555555554444443
No 292
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.20 E-value=1.9 Score=37.43 Aligned_cols=181 Identities=12% Similarity=0.086 Sum_probs=128.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcCcC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH-
Q 046638 96 NVFVQNRLVFMYAICGAINDANKVFSSMDER---DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLS- 171 (306)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~- 171 (306)
...+|+..+..-.+.|+.+.+.-+|++..-| -...|-..+.-....|+.+-|..++....+--++ +......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHH
Confidence 4678888899999999999999999999865 3456766677666779999998888776654333 2222222222
Q ss_pred HHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHH---HHHHHhcC-CCChhhHHHHHHH-----H
Q 046638 172 ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE---SFINSMSR-NPGPSVYKALLSA-----C 242 (306)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~-~~~~~~~~~l~~~-----~ 242 (306)
..-..|+++.|..+++.+.... |..+..-..-+....+.|..+.+. +++..... +.+......+.-- +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 2345789999999999998765 334555555567777888888888 55554443 2233333322222 4
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcC
Q 046638 243 QVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATD 280 (306)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 280 (306)
.-.++.+.|..++.++.+..|++...|..++......+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 44789999999999999999999999999888877665
No 293
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.17 E-value=1.9 Score=37.37 Aligned_cols=98 Identities=11% Similarity=0.069 Sum_probs=70.0
Q ss_pred CcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCchHHHHHHHH
Q 046638 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLD-LWPNDPAIYVLLSN 274 (306)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~ 274 (306)
++...|...+.--...|+++.+.-+|++.... .=...|-..+.-.-..|+.+-|..++....+ ..|..+.+...-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35566777777778888888888888887753 1223344444444455888888888888777 56666667666677
Q ss_pred HHhhcCChhhHHHHHHHHhhc
Q 046638 275 VSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~ 295 (306)
.....|+++.|..+++.+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh
Confidence 777788999999999888654
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.08 E-value=0.44 Score=34.92 Aligned_cols=64 Identities=13% Similarity=0.193 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHhccccchhhHHHHHHHHHH
Q 046638 27 QISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDY--FTITSIVGAIGVISGFKEGKQMHALIFK 90 (306)
Q Consensus 27 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 90 (306)
...+..+...|.+.|+.+.|++.|.++.+....+.. ..+-.+|......+++..+...+.++..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345777788888888888888888887775443332 4455667777777787777777776654
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.07 E-value=0.41 Score=37.62 Aligned_cols=77 Identities=9% Similarity=0.064 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHH-----cCCCccHHHHHHH
Q 046638 29 SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK-----IGYDSNVFVQNRL 103 (306)
Q Consensus 29 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 103 (306)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44556666777777777777777777754 35667777777777777777777777777654 4666666655544
Q ss_pred HHH
Q 046638 104 VFM 106 (306)
Q Consensus 104 ~~~ 106 (306)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 296
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.01 E-value=2 Score=36.71 Aligned_cols=176 Identities=9% Similarity=0.057 Sum_probs=121.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHH
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVF 105 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (306)
|....-+++..+..+.++.-.+.+..+|+..| .+-..|..++.+|... ..++-..+++++.+..+. |.+.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445567777888888888888888988865 5677888888888777 667778888888888765 5555566676
Q ss_pred HHHhcCChHHHHHHHHhcCcC------Cc---hhHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHc
Q 046638 106 MYAICGAINDANKVFSSMDER------DL---VSWNSLLLGCAHHGYSREAVQLFEQMQK-TEIKPDGTTFLVVLSACCH 175 (306)
Q Consensus 106 ~~~~~g~~~~a~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~ 175 (306)
.|-+ ++.+.+..+|.++... +. ..|..|...- ..+.+..+.+..++.. .|..--...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 6666 8888888888877631 11 2565555422 3567777777776654 3444445566667778888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHh
Q 046638 176 AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLG 211 (306)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (306)
..++++|++++..+.+... .+..+-..++.-+.
T Consensus 218 ~eN~~eai~Ilk~il~~d~---k~~~ar~~~i~~lR 250 (711)
T COG1747 218 NENWTEAIRILKHILEHDE---KDVWARKEIIENLR 250 (711)
T ss_pred ccCHHHHHHHHHHHhhhcc---hhhhHHHHHHHHHH
Confidence 8999999999987776543 25555555555443
No 297
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.81 E-value=0.024 Score=39.91 Aligned_cols=128 Identities=13% Similarity=0.159 Sum_probs=84.0
Q ss_pred HHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHH
Q 046638 68 IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREA 147 (306)
Q Consensus 68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 147 (306)
++..+.+.+.++....+++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5667778888999999999999877667788899999999999888888888773332 3445567777777878777
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCC
Q 046638 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF 215 (306)
Q Consensus 148 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (306)
.-++.++.... ..+..+...++++.|.++.... +++..|..++..+...+.
T Consensus 90 ~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~~--------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 90 VYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKKV--------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGGC--------SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHhc--------CcHHHHHHHHHHHHhcCc
Confidence 77776653211 1111234445555555333221 256667777777766554
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.75 E-value=0.099 Score=26.08 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046638 28 ISWNAIIAGFCNLGSGEQALKCFSEMRQA 56 (306)
Q Consensus 28 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 56 (306)
.+|..+...|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45777777888888888888888877764
No 299
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=3 Score=37.29 Aligned_cols=281 Identities=12% Similarity=-0.013 Sum_probs=150.8
Q ss_pred chhhhhhcCChHHHHhhhhhccCcc---hHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRTRN---QISWNAIIAGFCNLGS--GEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS 76 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 76 (306)
+|+-+...+.+..|+++-.-+..|. ...|......+.++.+ -+++++.+++=..... -+..+|..+.......|
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEG 521 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcC
Confidence 4555667777888888777766554 4556666666665532 2334444433333222 34456666666666778
Q ss_pred chhhHHHHHHHHHHcCCC----ccHHHHHHHHHHHHhcCChHHHHHHHHhcCcC-Cc--------------hhHHHHHH-
Q 046638 77 GFKEGKQMHALIFKIGYD----SNVFVQNRLVFMYAICGAINDANKVFSSMDER-DL--------------VSWNSLLL- 136 (306)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~--------------~~~~~l~~- 136 (306)
+.+-|..+++.=...+.. .+..-+...+.-....||.+-...++-.+.+. +. ..|.-++.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~ 601 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRH 601 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHh
Confidence 887777766542211100 01111223334445556665555555544421 00 01111111
Q ss_pred -------HHHhcCCHHHHHHHH--HHHH----hcCCCccHHHHHHHHHHHHccCChH----------HHHHHHHHHHhcC
Q 046638 137 -------GCAHHGYSREAVQLF--EQMQ----KTEIKPDGTTFLVVLSACCHAGFID----------KGLQYFYLMRNDA 193 (306)
Q Consensus 137 -------~~~~~~~~~~a~~~~--~~m~----~~~~~p~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~ 193 (306)
.+.+.++-.++...| +... ..|..|+. ....+++.+..... +-+++.+.+....
T Consensus 602 ~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~ 678 (829)
T KOG2280|consen 602 QDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF 678 (829)
T ss_pred hchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 111112222222211 1100 01223332 33344444443321 1222333343333
Q ss_pred CCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHH
Q 046638 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLS 273 (306)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 273 (306)
+..- ..-+.+--+.-+...|+..+|.++-.+.. -|+-..|..-+.+++..+++++-+++-+.. . +|.-|.-..
T Consensus 679 ~~~f-~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAksk---k--sPIGy~PFV 751 (829)
T KOG2280|consen 679 GGSF-VDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKSK---K--SPIGYLPFV 751 (829)
T ss_pred cccc-ccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhcc---C--CCCCchhHH
Confidence 3211 22334555666778899999999988876 478888888899999999998776665443 2 256788889
Q ss_pred HHHhhcCChhhHHHHHHHHh
Q 046638 274 NVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~ 293 (306)
.+|.+.|+.++|.+++.+..
T Consensus 752 e~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHhcccHHHHhhhhhccC
Confidence 99999999999999986653
No 300
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.65 E-value=3 Score=36.96 Aligned_cols=275 Identities=9% Similarity=-0.017 Sum_probs=153.9
Q ss_pred hHHHHhhhhhccC-cchHHHHHHHHH-----HHhcCChHHHHHHHHHHHH-------cCCCCChhhHHHHHHHhcccc--
Q 046638 12 SLDFQNVYSSVRT-RNQISWNAIIAG-----FCNLGSGEQALKCFSEMRQ-------AGIDIDYFTITSIVGAIGVIS-- 76 (306)
Q Consensus 12 ~~~A~~~~~~~~~-~~~~~~~~li~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-- 76 (306)
...|.++++..-. .+...-..+... +....+.+.|+.+|+...+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4567777776543 334333333322 4456788999999988866 44 3345555666665533
Q ss_pred ---chhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCChHHHHHHHHhcCcC-CchhHHHHHHHHH----hcCCHHHH
Q 046638 77 ---GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI-CGAINDANKVFSSMDER-DLVSWNSLLLGCA----HHGYSREA 147 (306)
Q Consensus 77 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~~a 147 (306)
+.+.|..++.+.-+.|. |+....-..+..... ..+...|.++|...-+. ...++-.+..+|. -..+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 66778999988888874 344433322222222 23577899998887753 3333333333332 23478899
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHH-HHhc----cCChHHHHHH
Q 046638 148 VQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG-LLGR----AGFLNEAESF 222 (306)
Q Consensus 148 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~----~~~~~~a~~~ 222 (306)
..++.+.-+.| .|...--...+..+.. ++.+.+.-.+..+.+.+...+.....+..... .... ..+.+.+...
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 99999988887 3332222333344444 77777766666665544322211111111111 0111 2245666667
Q ss_pred HHHhcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcC---ChhhHHHHHHHHhhc
Q 046638 223 INSMSRNPGPSVYKALLSACQV----HGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATD---CWDDAGDIRTLMYNR 295 (306)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~ 295 (306)
+.+.....+......+...|.. ..+++.|...+..+.... ......++..+...- .+..|.++++...+.
T Consensus 462 ~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 462 YSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 7666655555555555555433 235777888777776655 455556665554421 156777777766543
No 301
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.64 E-value=0.21 Score=40.03 Aligned_cols=91 Identities=14% Similarity=0.066 Sum_probs=38.5
Q ss_pred HHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHH
Q 046638 172 ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNRE 249 (306)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 249 (306)
-|.++|.+++|+..|....... |-++.++..-..+|.+..++..|+.-......- .-...|..-+.+-...|...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~---P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY---PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC---CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3444555555555554433222 224444444444555544444444433333221 11112333333333344555
Q ss_pred HHHHHHHHHhhcCCCc
Q 046638 250 IAVRSAKRVLDLWPND 265 (306)
Q Consensus 250 ~a~~~~~~~~~~~p~~ 265 (306)
+|.+-++.++++.|++
T Consensus 183 EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHhHHHHHhhCccc
Confidence 5555555555555543
No 302
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.57 E-value=0.18 Score=35.21 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=53.2
Q ss_pred HHHHHHHHH---hccCChHHHHHHHHHhcC-CCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 046638 202 HYTAIVGLL---GRAGFLNEAESFINSMSR-NPG---PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSN 274 (306)
Q Consensus 202 ~~~~l~~~~---~~~~~~~~a~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 274 (306)
+.+.|++.. ...++++++..+++.+.. +|+ ..++...+ +...|++.+|.++|++..+..|..+..-..+..
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 344444433 347889999999888865 343 34444333 678999999999999998877765555555555
Q ss_pred HHhhcCCh
Q 046638 275 VSKATDCW 282 (306)
Q Consensus 275 ~~~~~g~~ 282 (306)
++.-.|+.
T Consensus 87 CL~al~Dp 94 (153)
T TIGR02561 87 CLNAKGDA 94 (153)
T ss_pred HHHhcCCh
Confidence 66666653
No 303
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.46 E-value=0.1 Score=25.71 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=14.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 046638 238 LLSACQVHGNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~p~ 264 (306)
+..++.+.|++++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455555566666666655555553
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.42 E-value=1.2 Score=31.66 Aligned_cols=53 Identities=15% Similarity=-0.017 Sum_probs=28.7
Q ss_pred HccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC
Q 046638 174 CHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229 (306)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (306)
.+.++.+++..+++.+..-. |..+..-..-...+...|++.+|.++|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLR---P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR---PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 45556666666666555322 323333333444555666666666666666554
No 305
>PRK09687 putative lyase; Provisional
Probab=94.34 E-value=2.1 Score=34.04 Aligned_cols=234 Identities=10% Similarity=-0.022 Sum_probs=125.9
Q ss_pred hccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch----hhHHHHHHHHHHcCCCcc
Q 046638 21 SVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF----KEGKQMHALIFKIGYDSN 96 (306)
Q Consensus 21 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~ 96 (306)
.+..+|.......+.++...|. +.+...+..+... +|...-...+.++++.|+. +++...+..+... .++
T Consensus 31 ~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d 104 (280)
T PRK09687 31 LLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKS 104 (280)
T ss_pred HHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCC
Confidence 3445666666666667766664 3344444444432 4555555566666666653 3566666665443 344
Q ss_pred HHHHHHHHHHHHhcCC-----hHHHHHHHHh-cCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 046638 97 VFVQNRLVFMYAICGA-----INDANKVFSS-MDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVL 170 (306)
Q Consensus 97 ~~~~~~l~~~~~~~g~-----~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 170 (306)
..+....+.+++..+. ...+...+.. +..++..+-...+.++.+.++ +++...+-.+... ++...-...+
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 5555445555544432 1233333333 234555555666667766665 4556666555542 3334444455
Q ss_pred HHHHccC-ChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 046638 171 SACCHAG-FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNRE 249 (306)
Q Consensus 171 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 249 (306)
.++.+.+ +...+...+..+..+ ++..+-..-+.++.+.|+ ..|...+-+....++ .....+.++...|+.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~D-----~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQD-----KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhcC-----CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-
Confidence 5555543 133455555555432 255566667777777776 445555555554444 234566667777774
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHH
Q 046638 250 IAVRSAKRVLDLWPNDPAIYVLLSN 274 (306)
Q Consensus 250 ~a~~~~~~~~~~~p~~~~~~~~l~~ 274 (306)
+|...+.++.+..| |..+-.....
T Consensus 252 ~a~p~L~~l~~~~~-d~~v~~~a~~ 275 (280)
T PRK09687 252 TLLPVLDTLLYKFD-DNEIITKAID 275 (280)
T ss_pred hHHHHHHHHHhhCC-ChhHHHHHHH
Confidence 67777777777666 3334333333
No 306
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.28 E-value=0.042 Score=38.67 Aligned_cols=53 Identities=8% Similarity=0.034 Sum_probs=25.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHH
Q 046638 34 IAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHA 86 (306)
Q Consensus 34 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (306)
+..+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444455555555555555544433344444555555555554455544444
No 307
>PRK09687 putative lyase; Provisional
Probab=94.26 E-value=2.2 Score=33.94 Aligned_cols=221 Identities=9% Similarity=0.026 Sum_probs=135.4
Q ss_pred hhhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch--
Q 046638 5 TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSG----EQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGF-- 78 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 78 (306)
.+...|..+....+..-...+|...-...+.++.+.|+. .++...+..+... .|+...-...+.+++..+..
T Consensus 46 aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~ 123 (280)
T PRK09687 46 VLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNP 123 (280)
T ss_pred HHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhccccccc
Confidence 344444433333333333455666666677777888763 4677777777443 36666666666666655422
Q ss_pred ---hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHH-hcCcCCchhHHHHHHHHHhcC-CHHHHHHHHHH
Q 046638 79 ---KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFS-SMDERDLVSWNSLLLGCAHHG-YSREAVQLFEQ 153 (306)
Q Consensus 79 ---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~ 153 (306)
..+...+..... .++..+-...+.++++.|+.+ ++..+- -+..+|...-...+.++.+.+ +...+...+..
T Consensus 124 ~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~~-ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~ 199 (280)
T PRK09687 124 LYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDEA-AIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVA 199 (280)
T ss_pred ccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCHH-HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 223333333332 346677777888888888754 555444 444566666666666666653 24567777777
Q ss_pred HHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-CCCh
Q 046638 154 MQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR-NPGP 232 (306)
Q Consensus 154 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~ 232 (306)
+.. .++...-...+.++.+.|+. .+...+-...+.+ + .....+.++...|.. +|...+.++.. .||.
T Consensus 200 ~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~-----~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~ 267 (280)
T PRK09687 200 MLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG-----T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDN 267 (280)
T ss_pred Hhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC-----c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCCh
Confidence 664 34666777788889998885 4555555554432 2 245677888888885 68888888876 5777
Q ss_pred hhHHHHHHHHH
Q 046638 233 SVYKALLSACQ 243 (306)
Q Consensus 233 ~~~~~l~~~~~ 243 (306)
.+-...+.++.
T Consensus 268 ~v~~~a~~a~~ 278 (280)
T PRK09687 268 EIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHh
Confidence 66665555543
No 308
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.25 E-value=0.19 Score=40.23 Aligned_cols=88 Identities=11% Similarity=-0.063 Sum_probs=72.3
Q ss_pred HHHHhccCChHHHHHHHHHhcC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhh
Q 046638 207 VGLLGRAGFLNEAESFINSMSR-NP-GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDD 284 (306)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 284 (306)
.+-|.+.|.+++|++.|.+... .| ++.++..-..+|.+...+..|..-...++.++..-...|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 4567899999999999988776 36 888898889999999999999888888888776666778888888778888888
Q ss_pred HHHHHHHHhh
Q 046638 285 AGDIRTLMYN 294 (306)
Q Consensus 285 a~~~~~~m~~ 294 (306)
|.+-++...+
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 8777766554
No 309
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.12 E-value=1 Score=38.05 Aligned_cols=89 Identities=18% Similarity=0.095 Sum_probs=45.0
Q ss_pred HHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHH
Q 046638 173 CCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREI 250 (306)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 250 (306)
....|+++.+.+.+......-+ ....+...++....+.|++++|...-..|... .++.............|-+++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~---s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIG---TTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhc---CCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHH
Confidence 4455666666655544432211 13344555566666666666666666555542 222222222233444555666
Q ss_pred HHHHHHHHhhcCCC
Q 046638 251 AVRSAKRVLDLWPN 264 (306)
Q Consensus 251 a~~~~~~~~~~~p~ 264 (306)
+...|++...++|+
T Consensus 410 ~~~~wk~~~~~~~~ 423 (831)
T PRK15180 410 SYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHhccCCh
Confidence 66666666665554
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.08 E-value=0.82 Score=33.90 Aligned_cols=75 Identities=12% Similarity=0.061 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC-CCcHhHHHHHHHHHhccCChHHHH
Q 046638 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLE-PPRAEHYTAIVGLLGRAGFLNEAE 220 (306)
Q Consensus 145 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 220 (306)
++|...|-++...+.--+......+. .|....+.+++..++.+..+..... .+++..+..|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45566666665554433333333333 3333556666666666555433322 346666666666666666666653
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.06 E-value=0.15 Score=25.32 Aligned_cols=29 Identities=7% Similarity=0.028 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 267 AIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 267 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
..+..++.++...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999988764
No 312
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.04 E-value=4.4 Score=36.47 Aligned_cols=264 Identities=12% Similarity=0.081 Sum_probs=146.3
Q ss_pred chHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCChh-----hHHHHHHHhccccchhhHHHHHHHHHHcC----CCc
Q 046638 26 NQISWNAIIAGFC-NLGSGEQALKCFSEMRQAGIDIDYF-----TITSIVGAIGVISGFKEGKQMHALIFKIG----YDS 95 (306)
Q Consensus 26 ~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~ 95 (306)
...++-.+...+. ...+++.|+..+++.....-.++-. .-..++..+.+.+... |...+++.++.- ..+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4445666666655 6789999999999875543222221 1223455555555544 888888876532 222
Q ss_pred cHHHHHHH-HHHHHhcCChHHHHHHHHhcCc-------CCchhHHHHHHH--HHhcCCHHHHHHHHHHHHhcCC------
Q 046638 96 NVFVQNRL-VFMYAICGAINDANKVFSSMDE-------RDLVSWNSLLLG--CAHHGYSREAVQLFEQMQKTEI------ 159 (306)
Q Consensus 96 ~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~------ 159 (306)
-...+..+ +..+...++...|.+.++.+.. +.+..+-.++.+ ..+.+..+++.+.++++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 23334433 3334344799999999988763 222333334443 3455667778888877743221
Q ss_pred ---CccHHHHHHHHHHHH--ccCChHHHHHHHHHHHh---cCCCCC-------------------------CcH------
Q 046638 160 ---KPDGTTFLVVLSACC--HAGFIDKGLQYFYLMRN---DASLEP-------------------------PRA------ 200 (306)
Q Consensus 160 ---~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~---~~~~~~-------------------------~~~------ 200 (306)
.|...++..++..++ ..|+++.+...++++.. .....+ +..
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 345566777766554 56776666665544322 110000 000
Q ss_pred ---hHHHHHHH--HHhccCChHHHHHHHHHh-------c-CC---CCh--------hhHHHHH---------HHHHhcCC
Q 046638 201 ---EHYTAIVG--LLGRAGFLNEAESFINSM-------S-RN---PGP--------SVYKALL---------SACQVHGN 247 (306)
Q Consensus 201 ---~~~~~l~~--~~~~~~~~~~a~~~~~~~-------~-~~---~~~--------~~~~~l~---------~~~~~~~~ 247 (306)
.+..-++. ..+..+..++|.+++++. . .. +.. ..|...+ -..+..++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 11111122 223445444555555443 3 11 111 1122111 12345788
Q ss_pred HHHHHHHHHHHhhc---CCC------chHHHHHHHHHHhhcCChhhHHHHHH
Q 046638 248 REIAVRSAKRVLDL---WPN------DPAIYVLLSNVSKATDCWDDAGDIRT 290 (306)
Q Consensus 248 ~~~a~~~~~~~~~~---~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 290 (306)
+..|....+.+.+. .|+ .+..+...+..+...|+.+.|...|.
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 99999999988873 222 35566777777888999999999997
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.97 E-value=0.14 Score=26.81 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 234 VYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
+++.+...|...|++++|..++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344445555555555555555555444
No 314
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.81 E-value=1.5 Score=31.92 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=33.5
Q ss_pred CCh-hhHHHHHHHHHhcC-----------CHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCC
Q 046638 230 PGP-SVYKALLSACQVHG-----------NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGI 297 (306)
Q Consensus 230 ~~~-~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 297 (306)
|+. .++..+..+|...+ .+++|.+.|+++...+|++. .|..-+.... +|-++..++.+.+.
T Consensus 66 P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 66 PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 443 45555555554433 25677777777777888764 5554444432 36666666655543
No 315
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=1.8 Score=37.64 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=49.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHH
Q 046638 139 AHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNE 218 (306)
Q Consensus 139 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (306)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+-+.
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD-----------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----------hhhhhhhhhhcCChhH
Confidence 34455555555544331 334456666666666666666666554432 3334444555555444
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 219 AESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258 (306)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (306)
...+-....+. ...|...-+|...|+++++.+++..-
T Consensus 711 l~~la~~~~~~---g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 711 LAVLASLAKKQ---GKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhh---cccchHHHHHHHcCCHHHHHHHHHhc
Confidence 33333333221 01122233455667777666665543
No 316
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.75 E-value=0.79 Score=29.35 Aligned_cols=63 Identities=13% Similarity=0.197 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHH
Q 046638 143 YSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208 (306)
Q Consensus 143 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (306)
|.-++.+-++.+...+..|+.....+.+.+|.+.+++..|.++++-++...+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~---~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA---HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC---chhhHHHHHH
Confidence 44466677777777788888888888889999999999999988877754431 3345655554
No 317
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.66 E-value=0.77 Score=29.74 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHH
Q 046638 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL 209 (306)
Q Consensus 146 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 209 (306)
+...-++.+....+.|+.....+.+.+|.+.+++..|.++++-++...+. ....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~---~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN---KKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT----TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC---hHHHHHHHHHH
Confidence 56667777777788888888888899999999999999999888776542 22266666653
No 318
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.56 E-value=5.9 Score=36.37 Aligned_cols=216 Identities=15% Similarity=0.033 Sum_probs=119.5
Q ss_pred ccccchhhHHHHHHHHHHcCCCccH-------HHHHHHH-HHHHhcCChHHHHHHHHhcCc--------CCchhHHHHHH
Q 046638 73 GVISGFKEGKQMHALIFKIGYDSNV-------FVQNRLV-FMYAICGAINDANKVFSSMDE--------RDLVSWNSLLL 136 (306)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~ 136 (306)
....++++|..++.++...-..|+. ..++.|- ......|++++|.++.+.... +.+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567889999988887754333221 2333332 234456888999888877653 45667788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHH---HH--HHHHHccCCh--HHHHHHHHHHHhcCCCCC----CcHhHHHH
Q 046638 137 GCAHHGYSREAVQLFEQMQKTEIKPDGTTFL---VV--LSACCHAGFI--DKGLQYFYLMRNDASLEP----PRAEHYTA 205 (306)
Q Consensus 137 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~l--~~~~~~~~~~--~~a~~~~~~~~~~~~~~~----~~~~~~~~ 205 (306)
+..-.|++++|..+..+..+..-.-+...+. .+ ...+..+|+. .+....|........... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999999888776542222222222 22 2234566733 233333333332211111 12334444
Q ss_pred HHHHHhccCChHHHHHHHHHhcC-----CCCh--hhH--HHHHHHHHhcCCHHHHHHHHHHHhhc--CCC---ch--HHH
Q 046638 206 IVGLLGRAGFLNEAESFINSMSR-----NPGP--SVY--KALLSACQVHGNREIAVRSAKRVLDL--WPN---DP--AIY 269 (306)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~-----~~~~--~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~---~~--~~~ 269 (306)
+..++.+ ++.+..-...-.. .|.. ..+ ..|.......|+.++|...+.++... ++. +- ..+
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4555544 3333333222221 1222 222 25667788899999999999998872 221 11 122
Q ss_pred HHHHHHHhhcCChhhHHHHHHH
Q 046638 270 VLLSNVSKATDCWDDAGDIRTL 291 (306)
Q Consensus 270 ~~l~~~~~~~g~~~~a~~~~~~ 291 (306)
..-.......|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 2223344567887777766654
No 319
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.48 E-value=2.5 Score=31.86 Aligned_cols=177 Identities=12% Similarity=-0.004 Sum_probs=102.1
Q ss_pred ccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCch-hHHHH--HHHHHhcCCHHHHHHHH
Q 046638 75 ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLV-SWNSL--LLGCAHHGYSREAVQLF 151 (306)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~~a~~~~ 151 (306)
.|-+.-|.--|.+.+...+. -+.++|.|.-.+...|+++.|.+.|+...+-|+. -|..+ .-++.-.|++.-|.+-+
T Consensus 78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 34444444455555554432 4678999999999999999999999999875542 22222 22344568999998888
Q ss_pred HHHHhcCCC-ccHHHHHHHHHHHHccCChHHHHHHH-HHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC-
Q 046638 152 EQMQKTEIK-PDGTTFLVVLSACCHAGFIDKGLQYF-YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR- 228 (306)
Q Consensus 152 ~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 228 (306)
.+.-+.++. |-...|..+. -+.-++.+|..-+ ++..... . ....|+. +..|...=..+ .+++++..
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d---~-e~WG~~i-V~~yLgkiS~e---~l~~~~~a~ 225 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSD---K-EQWGWNI-VEFYLGKISEE---TLMERLKAD 225 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhcc---H-hhhhHHH-HHHHHhhccHH---HHHHHHHhh
Confidence 777666543 3223333332 2334555555444 3443211 0 2222222 22222211222 22333322
Q ss_pred --C------CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 046638 229 --N------PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP 263 (306)
Q Consensus 229 --~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 263 (306)
. .-..||--+..-+...|+.++|..+|+-++..+.
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 1 1234666778888999999999999999887543
No 320
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.43 E-value=3 Score=32.57 Aligned_cols=199 Identities=9% Similarity=0.004 Sum_probs=122.8
Q ss_pred CcchHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHhccccchhhHHHHHHHHHHc---CC--C
Q 046638 24 TRNQISWNAIIAG-FCNLGSGEQALKCFSEMRQAGIDIDY---FTITSIVGAIGVISGFKEGKQMHALIFKI---GY--D 94 (306)
Q Consensus 24 ~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~ 94 (306)
+||+..=|..-.. -.+...+++|+.-|++.++....... .....++....+.+++++....+.+++.. .+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 4565544432211 12445889999999998875322222 33445677888999999999988887632 11 2
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHhcCc-----CCch----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----Cc
Q 046638 95 SNVFVQNRLVFMYAICGAINDANKVFSSMDE-----RDLV----SWNSLLLGCAHHGYSREAVQLFEQMQKTEI----KP 161 (306)
Q Consensus 95 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~p 161 (306)
-+....|.+++.-+.+.+.+--.++|+.-.+ .+.. +-..|...|...+.+.+...+++++.+.-. .-
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 2445667777777777776666666554332 2222 445677888888888888888888865411 11
Q ss_pred c-------HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHH----HHHhccCChHHHHHHH
Q 046638 162 D-------GTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIV----GLLGRAGFLNEAESFI 223 (306)
Q Consensus 162 ~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~ 223 (306)
| ...|..-+..|..+.+-..-..+|++...-....| .+.....+= .+..+.|++++|..-|
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP-HPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP-HPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC-chHHHhHHHHcCCccccccchHHHHHhHH
Confidence 1 24566667777788887777788877665444333 554433322 2344667888776543
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.32 E-value=2.1 Score=37.29 Aligned_cols=102 Identities=14% Similarity=0.035 Sum_probs=54.3
Q ss_pred HHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHH
Q 046638 107 YAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYF 186 (306)
Q Consensus 107 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (306)
..+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|.+... |..|+-.+...|+.+....+-
T Consensus 647 al~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 345566666666554433 344566666666666666666666655432 334444555555555444444
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhc
Q 046638 187 YLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (306)
....+.+.. +.. ..+|...|+++++.+++.+-.
T Consensus 716 ~~~~~~g~~---N~A-----F~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 716 SLAKKQGKN---NLA-----FLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHhhccc---chH-----HHHHHHcCCHHHHHHHHHhcC
Confidence 444444421 221 223445566666666666554
No 322
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=0.66 Score=35.30 Aligned_cols=79 Identities=16% Similarity=0.084 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHhcC-CCChhh-HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHH
Q 046638 214 GFLNEAESFINSMSR-NPGPSV-YKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTL 291 (306)
Q Consensus 214 ~~~~~a~~~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 291 (306)
.+++.|+..|.+.+. .|...+ |+.-+-.+.+..+++.+..--.+++++.|+.......++.+......+++|+..+.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 344444444443333 244422 333344444455555555555555555555555555555555555555555555544
Q ss_pred H
Q 046638 292 M 292 (306)
Q Consensus 292 m 292 (306)
.
T Consensus 104 a 104 (284)
T KOG4642|consen 104 A 104 (284)
T ss_pred H
Confidence 4
No 323
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.17 E-value=0.25 Score=23.51 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 046638 235 YKALLSACQVHGNREIAVRSAKRVLDLWP 263 (306)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 263 (306)
|..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444445555555555555555554444
No 324
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.15 E-value=0.88 Score=29.15 Aligned_cols=46 Identities=9% Similarity=0.004 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHH
Q 046638 44 EQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIF 89 (306)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 89 (306)
=++.+-++.+...++.|++......+.+|.+.+++..|.++++-.+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3556666666677777888888888888888888888888887666
No 325
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.06 E-value=5.3 Score=34.34 Aligned_cols=60 Identities=8% Similarity=0.116 Sum_probs=25.8
Q ss_pred ChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhc
Q 046638 61 DYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123 (306)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 123 (306)
|.....+++..+.....+.-+..+..+|+..| .+...+..++.+|... ..++-..+++++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ 124 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERL 124 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHH
Confidence 33344444444444444444444444444443 1333444444444444 233334444433
No 326
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.99 E-value=1.5 Score=32.52 Aligned_cols=88 Identities=7% Similarity=-0.053 Sum_probs=52.5
Q ss_pred hccccchhhHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHH---HHHHHHhcCCH
Q 046638 72 IGVISGFKEGKQMHALIFKIGYDSNV----FVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNS---LLLGCAHHGYS 144 (306)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~~~~ 144 (306)
+...|++++|..-|..++..-++... ..|..-..++.+.+.++.|+.-..+..+-+..--.+ -..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 34667777777777777665433222 234444456667777777777666666543322222 23466777777
Q ss_pred HHHHHHHHHHHhcCC
Q 046638 145 REAVQLFEQMQKTEI 159 (306)
Q Consensus 145 ~~a~~~~~~m~~~~~ 159 (306)
++|++-|+++.+..+
T Consensus 185 eealeDyKki~E~dP 199 (271)
T KOG4234|consen 185 EEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHhCc
Confidence 788877777776543
No 327
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.96 E-value=2.4 Score=30.24 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=9.5
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 046638 138 CAHHGYSREAVQLFEQMQK 156 (306)
Q Consensus 138 ~~~~~~~~~a~~~~~~m~~ 156 (306)
+...|+|.+|..+|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3445555555555555433
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.94 E-value=0.35 Score=25.25 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046638 28 ISWNAIIAGFCNLGSGEQALKCFSEMRQ 55 (306)
Q Consensus 28 ~~~~~li~~~~~~~~~~~a~~~~~~~~~ 55 (306)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888877654
No 329
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.93 E-value=4.1 Score=32.75 Aligned_cols=126 Identities=11% Similarity=0.207 Sum_probs=74.1
Q ss_pred hhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh--c----CChHHHHHHHHhcCc-------CCchhHHHHHHHHHhcCC-
Q 046638 78 FKEGKQMHALIFKIGYDSNVFVQNRLVFMYAI--C----GAINDANKVFSSMDE-------RDLVSWNSLLLGCAHHGY- 143 (306)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~- 143 (306)
+++...+++.+.+.|...+..++-+....... . ....+|.++|+.|++ ++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56677889999999998777666554333333 1 235678889999885 344455555443 3333
Q ss_pred ---HHHHHHHHHHHHhcCCCccHH--HHHHHHHHHHccCC--hHHHHHHHHHHHhcCCCCCCcHhHHHHHH
Q 046638 144 ---SREAVQLFEQMQKTEIKPDGT--TFLVVLSACCHAGF--IDKGLQYFYLMRNDASLEPPRAEHYTAIV 207 (306)
Q Consensus 144 ---~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (306)
.+.++.+|+.+.+.|+..+.. ....++..+..... ...+.++++.+.+.+.. .....|..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k--ik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK--IKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc--cccccccHHH
Confidence 356677788888777765432 22333322222222 34677788888877543 2444455443
No 330
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.88 E-value=2.1 Score=34.17 Aligned_cols=103 Identities=13% Similarity=0.081 Sum_probs=71.5
Q ss_pred cCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc-CCc-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHH
Q 046638 91 IGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-RDL-----VSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGT 164 (306)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 164 (306)
.|.+....+...++..-....++++++..+-++.. |+. .+-.+.+..+ -.=++++++.++..=++.|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 44444555566666666667788888888777763 221 1122233333 3346788888888888899999999
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 046638 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDAS 194 (306)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 194 (306)
+++.+++.+.+.+++.+|.++.-.|.....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 999999999999999888888766665443
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.85 E-value=3.9 Score=32.33 Aligned_cols=58 Identities=16% Similarity=-0.086 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 236 KALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
+.....|...|.+.+|..+-++++..+|-+...+..|+..+...|+--.+.+-++.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3455668899999999999999999999999999999999999999888888777764
No 332
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.53 E-value=0.18 Score=23.43 Aligned_cols=23 Identities=17% Similarity=0.042 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhcCChhhHHHHHH
Q 046638 268 IYVLLSNVSKATDCWDDAGDIRT 290 (306)
Q Consensus 268 ~~~~l~~~~~~~g~~~~a~~~~~ 290 (306)
....++..+...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44556666666666666666654
No 333
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.52 E-value=0.45 Score=26.81 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=25.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCchHHH
Q 046638 238 LLSACQVHGNREIAVRSAKRVLDLWPNDPAIY 269 (306)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 269 (306)
+.-++.+.|++++|.+..+.+++..|++....
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 45568899999999999999999999876543
No 334
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.49 E-value=15 Score=38.00 Aligned_cols=65 Identities=9% Similarity=0.001 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC
Q 046638 232 PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298 (306)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 298 (306)
..+|....+.....|.++.|...+-.+.+..+ +..+.-.+......|+...|+.++++..+.+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 44677788888889999999999888888775 468888999999999999999999988865543
No 335
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.47 E-value=2.7 Score=29.55 Aligned_cols=51 Identities=16% Similarity=-0.011 Sum_probs=22.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC
Q 046638 176 AGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN 229 (306)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (306)
.++.+++..+++.+.--. |.....-..-.-.+...|++++|.++|+++...
T Consensus 23 ~~d~~D~e~lLdALrvLr---P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR---PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhC---CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 445555555555444221 222222222333344555555555555555543
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.43 E-value=0.37 Score=23.83 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 267 AIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 267 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
.++..++..|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999987753
No 337
>PRK12798 chemotaxis protein; Reviewed
Probab=92.35 E-value=5.9 Score=33.13 Aligned_cols=190 Identities=15% Similarity=0.114 Sum_probs=118.3
Q ss_pred hcCChHHHHHHHHhcCc----CCchhHHHHHHH-HHhcCCHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHccCChHH
Q 046638 109 ICGAINDANKVFSSMDE----RDLVSWNSLLLG-CAHHGYSREAVQLFEQMQKT--EIKPDGTTFLVVLSACCHAGFIDK 181 (306)
Q Consensus 109 ~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~ 181 (306)
-.|+..+|.+.+..+.. +....+-.|+.+ .....++.+|+++|+...-. |.-..+.....-+....+.|+.++
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~r 203 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADK 203 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHH
Confidence 36999999999998874 344566667665 45567899999999987643 211233445555566788999988
Q ss_pred HHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccC---ChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 182 GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG---FLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258 (306)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (306)
+..+-.+........|--...+..+...+.+.+ ..+.-..++..|........|..+...-...|+.+.|.-.-+++
T Consensus 204 f~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 204 FEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 777666655554332322233344444444443 34455555555554344568888888889999999999998988
Q ss_pred hhcCCC----chHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC
Q 046638 259 LDLWPN----DPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298 (306)
Q Consensus 259 ~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 298 (306)
+.+... .......-+.+-.-..+++++.+.+..+....+.
T Consensus 284 ~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~ 327 (421)
T PRK12798 284 LKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLS 327 (421)
T ss_pred HHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCC
Confidence 885432 1222222222233345577777777666554443
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.16 E-value=0.25 Score=24.20 Aligned_cols=28 Identities=14% Similarity=0.075 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 268 IYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 268 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
++..++.++.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667889999999999999999999864
No 339
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.13 E-value=8.7 Score=34.61 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=25.9
Q ss_pred CchhhhhhcCChHHHHhhhhhcc---CcchHHHHHHHHHHHhc
Q 046638 1 LQILTYSRCDSSLDFQNVYSSVR---TRNQISWNAIIAGFCNL 40 (306)
Q Consensus 1 ali~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 40 (306)
++|-.|.|+|++++|.++..... ......+-..+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 36788999999999999993332 23344555566666554
No 340
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.12 E-value=4.8 Score=31.67 Aligned_cols=159 Identities=14% Similarity=0.069 Sum_probs=75.4
Q ss_pred hcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHH----HHHHHcCCCCChhhHHHHHHHhccccch-hhHH
Q 046638 8 RCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCF----SEMRQAGIDIDYFTITSIVGAIGVISGF-KEGK 82 (306)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~ 82 (306)
+.+++++|++++.+.-. .+.+.|+...|-++. +.+.+.+.++|......++..+...+.- ..-.
T Consensus 2 ~~kky~eAidLL~~Ga~-----------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGAL-----------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHHHH-----------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHHHH-----------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 56778888887765421 233444444333332 2223344555554444444444333211 1222
Q ss_pred HHHHHHH---HcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046638 83 QMHALIF---KIG--YDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKT 157 (306)
Q Consensus 83 ~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 157 (306)
++.+.++ +.+ ..-++..+..+...|.+.|++.+|...|-.-..++...+..++......|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 3333332 222 2346788889999999999999998887666555444332233222222222222
Q ss_pred CCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 046638 158 EIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192 (306)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (306)
+... ...+--|.-.++...|...++...+.
T Consensus 141 ----dlfi-~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ----DLFI-ARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----HHHH-HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ----hHHH-HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2221 22333455677788888777665543
No 341
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.99 E-value=9.1 Score=34.51 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=10.8
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCc
Q 046638 242 CQVHGNREIAVRSAKRVLDLWPND 265 (306)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~p~~ 265 (306)
+...|+++.|++.++++- +-|.+
T Consensus 515 ~~~~g~~~~AL~~i~~L~-liP~~ 537 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLD-LIPLD 537 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT--S-S-
T ss_pred HHHcCCHHHHHHHHHhCC-CCCCC
Confidence 345666666666666543 44433
No 342
>PRK10941 hypothetical protein; Provisional
Probab=91.87 E-value=1.3 Score=34.88 Aligned_cols=58 Identities=21% Similarity=0.174 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhh
Q 046638 237 ALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 294 (306)
.+-.+|.+.++++.|.++.+.++...|+++.-+---+..|.+.|.+..|..=++...+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3444566666666666666666666666665566666666666666666665555543
No 343
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.77 E-value=0.069 Score=42.52 Aligned_cols=117 Identities=18% Similarity=0.051 Sum_probs=75.2
Q ss_pred HHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CCh-hhHHHHHHHHHhcCCHHH
Q 046638 173 CCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PGP-SVYKALLSACQVHGNREI 250 (306)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~ 250 (306)
....|.++.|++.|...+... |+....|..-.+++.+.++...|++=+.....- |+. ..|-.-..+....|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln---p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN---PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC---CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 356677888888887776533 556677777777788888888888777766552 333 234444445566788888
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 251 AVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 251 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
|.+.++.+.+++-+ ..+-..|-...-..+..++-...+++.+
T Consensus 201 aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 201 AAHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 88888888876653 3444555555555565555555555444
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.75 E-value=2.1 Score=32.23 Aligned_cols=71 Identities=8% Similarity=-0.037 Sum_probs=40.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHH
Q 046638 102 RLVFMYAICGAINDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE--IKPDGTTFLVVLSA 172 (306)
Q Consensus 102 ~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~ 172 (306)
..++.+.+.+.+++|+...++-.+ | |...-..++..+|-.|+|++|..-++-.-... ..+...+|..++.+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345556666777777766665432 2 44455666777777777777776666553321 22334455555544
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.74 E-value=3.4 Score=30.78 Aligned_cols=69 Identities=12% Similarity=-0.086 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc-------CCchhHHHHHHHHHhcCCHHHHH
Q 046638 79 KEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE-------RDLVSWNSLLLGCAHHGYSREAV 148 (306)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~ 148 (306)
+.|.+.|-.+...+.--++.....|+..|. ..|.++++.++.+..+ .|+..+..|++.+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445555555555554445555555655555 3556666666655542 45566777777777777776653
No 346
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=91.65 E-value=1.3 Score=28.56 Aligned_cols=59 Identities=12% Similarity=-0.025 Sum_probs=39.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHH
Q 046638 35 AGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQ 100 (306)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (306)
..+...|++++|..+.+.+ ..||...|..|-. .+.|-.+....-+..+...| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 4577888888888877665 4678777766544 36677777777777777766 3444444
No 347
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.64 E-value=8 Score=33.16 Aligned_cols=243 Identities=8% Similarity=-0.033 Sum_probs=139.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc------chhhHHHHHHHHHHcC-CC-ccHHHHHHHHHHHHhcCCh
Q 046638 42 SGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVIS------GFKEGKQMHALIFKIG-YD-SNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~ 113 (306)
+.+....+|++..+. .|+...|...|..|...- .+.....+++...+.+ .. .....|..+..++......
T Consensus 297 k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~ 374 (568)
T KOG2396|consen 297 KESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEA 374 (568)
T ss_pred hHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchH
Confidence 344556777777663 466677777776664322 3444555666555433 22 2345566666666666553
Q ss_pred -HHHHHHHHhcCcCCchhHHHHHHHHHhc-CCHHHH-HHHHHHHHhcCCCccHHHHHHHHHHHHccCC-hHH--HHHHHH
Q 046638 114 -NDANKVFSSMDERDLVSWNSLLLGCAHH-GYSREA-VQLFEQMQKTEIKPDGTTFLVVLSACCHAGF-IDK--GLQYFY 187 (306)
Q Consensus 114 -~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~--a~~~~~ 187 (306)
.-|..+..+....+...|-.-++...+. .+++-- ..++......-..+....++... .++ .+. -..++.
T Consensus 375 r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 375 REVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred hHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 3344444466666777776666655532 222221 22233333322223333343333 122 111 112223
Q ss_pred HHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHH--HhcCCHHHHHHHHHHHhhcCC
Q 046638 188 LMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSAC--QVHGNREIAVRSAKRVLDLWP 263 (306)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p 263 (306)
.+..... +.....-+.+...+.+.|-..+|..++..+..- |+...|..+|..- ...-+..-+..+|+.+.....
T Consensus 450 a~~s~~~--~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 450 ALLSVIG--ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHHHhcC--CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 3333222 223344567788888999999999999988763 5666777777652 222337788899999988444
Q ss_pred CchHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 264 NDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 264 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
.++..|.-....-...|..+.+-.++.+..
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 678888888888888999888887765543
No 348
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.38 E-value=2.9 Score=35.46 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=54.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCC
Q 046638 136 LGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF 215 (306)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (306)
..+...|+++.+...+...... +.....+..+++....+.|+++.|...-..|...... ++++...-...-...|-
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie---~~ei~~iaa~sa~~l~~ 406 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE---DEEVLTVAAGSADALQL 406 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC---ChhheeeecccHHHHhH
Confidence 3445667777777777665432 2334456677777777777887777777776654432 33444433444445667
Q ss_pred hHHHHHHHHHhcC
Q 046638 216 LNEAESFINSMSR 228 (306)
Q Consensus 216 ~~~a~~~~~~~~~ 228 (306)
++++...|++...
T Consensus 407 ~d~~~~~wk~~~~ 419 (831)
T PRK15180 407 FDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777654
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.36 E-value=12 Score=34.57 Aligned_cols=197 Identities=14% Similarity=0.087 Sum_probs=112.1
Q ss_pred HHHhcCChHHHHHHHHhcC----cCCc-------hhHHHHHH-HHHhcCCHHHHHHHHHHHHhc----CCCccHHHHHHH
Q 046638 106 MYAICGAINDANKVFSSMD----ERDL-------VSWNSLLL-GCAHHGYSREAVQLFEQMQKT----EIKPDGTTFLVV 169 (306)
Q Consensus 106 ~~~~~g~~~~a~~~~~~~~----~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l 169 (306)
......++++|..+..+.. .|+. ..|+.+-. .....|+++.|.++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3455688999998887765 2322 24554433 345678999999988877643 123345556677
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCCC-CCcHhHHHHH--HHHHhccCChHHH--HHHHHHhcC-----CC----ChhhH
Q 046638 170 LSACCHAGFIDKGLQYFYLMRNDASLE-PPRAEHYTAI--VGLLGRAGFLNEA--ESFINSMSR-----NP----GPSVY 235 (306)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~l--~~~~~~~~~~~~a--~~~~~~~~~-----~~----~~~~~ 235 (306)
..+..-.|++++|..+.....+..... .+-...|..+ ...+...|+...+ +..|..... +| -..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 778888999999998886655431110 0122333333 3345566743332 333333322 11 12234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh----hcCCC--chH-HHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCCCcC
Q 046638 236 KALLSACQVHGNREIAVRSAKRVL----DLWPN--DPA-IYVLLSNVSKATDCWDDAGDIRTLMYNRGIRKKPGYSW 305 (306)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~----~~~p~--~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 305 (306)
..+..++.+ .+.+..-..... ...|. ++. .+..|+.+....|+.++|...++++......+.+...|
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 444455444 333333333333 23332 221 23478899999999999999999998766655544443
No 350
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.31 E-value=0.87 Score=29.49 Aligned_cols=46 Identities=9% Similarity=0.011 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHH
Q 046638 45 QALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFK 90 (306)
Q Consensus 45 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 90 (306)
+..+-++.+...++.|++......+.+|.+.+++..|.++++-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555555666666666666666666666666666666553
No 351
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.20 E-value=1.2 Score=38.58 Aligned_cols=98 Identities=17% Similarity=0.106 Sum_probs=61.9
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHH
Q 046638 175 HAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR--NPGPSVYKALLSACQVHGNREIAV 252 (306)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 252 (306)
-.|+...|.+.+.......... .......|.+...+.|....|-.++.+... ...+.++..+..++....+++.|+
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~--~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQ--QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhh--hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 3566777777766655433221 112244566666666777777777666544 244556666777777778888888
Q ss_pred HHHHHHhhcCCCchHHHHHHHH
Q 046638 253 RSAKRVLDLWPNDPAIYVLLSN 274 (306)
Q Consensus 253 ~~~~~~~~~~p~~~~~~~~l~~ 274 (306)
+.|+++++..|+++..-..|..
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHH
Confidence 8888888877777766555543
No 352
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=91.00 E-value=3.4 Score=32.45 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=38.0
Q ss_pred HHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCc----CCchhHHHHHHHHH-----
Q 046638 69 VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDE----RDLVSWNSLLLGCA----- 139 (306)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~----- 139 (306)
|++++..+++.++..+.-+--+.--+....+....|-.|.+.|.+..+.++-..-.+ .+...|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 445555555555554443333221122233344444555555555555554443321 22333544444433
Q ss_pred hcCCHHHHHHHH
Q 046638 140 HHGYSREAVQLF 151 (306)
Q Consensus 140 ~~~~~~~a~~~~ 151 (306)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666665
No 353
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.68 E-value=0.45 Score=25.58 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=20.3
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhhcC
Q 046638 270 VLLSNVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 270 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
..|+.+|...|+.+.|+++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 346778888888888888888877543
No 354
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.45 E-value=5.2 Score=28.94 Aligned_cols=100 Identities=8% Similarity=0.071 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC
Q 046638 82 KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHH--GYSREAVQLFEQMQKTEI 159 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m~~~~~ 159 (306)
.++++.+.+.+++|+...+..++..+.+.|++.....+++--.-+|....-..+-.+... .-.+-|++++.++..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~--- 90 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT--- 90 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh---
Confidence 345566667777788888888888888888777766666544434333222222111111 012333334333321
Q ss_pred CccHHHHHHHHHHHHccCChHHHHHHHHHH
Q 046638 160 KPDGTTFLVVLSACCHAGFIDKGLQYFYLM 189 (306)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (306)
.+..++..+...|++-+|.++....
T Consensus 91 -----~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 91 -----AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -----hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 2344555666667776666666554
No 355
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=90.37 E-value=0.98 Score=21.78 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 046638 246 GNREIAVRSAKRVLDLWPNDPAIYVLLSNV 275 (306)
Q Consensus 246 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 275 (306)
|+.+.+..+|++++...|.++..+...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467888889999988888877777666543
No 356
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.22 E-value=9 Score=31.30 Aligned_cols=78 Identities=9% Similarity=0.030 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhc---cCChHHHHH
Q 046638 145 REAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGR---AGFLNEAES 221 (306)
Q Consensus 145 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~ 221 (306)
+.-+.++++.++.++ -+.......+..+.+..+.+...+-++++.... |.+...|...++.... .-.++....
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~---~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN---PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 344555666555533 244445555566666666666666666665543 2245555555544332 223444444
Q ss_pred HHHHh
Q 046638 222 FINSM 226 (306)
Q Consensus 222 ~~~~~ 226 (306)
+|.+.
T Consensus 124 ~y~~~ 128 (321)
T PF08424_consen 124 VYEKC 128 (321)
T ss_pred HHHHH
Confidence 44443
No 357
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.21 E-value=1.2 Score=23.95 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=14.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 046638 134 LLLGCAHHGYSREAVQLFEQMQKT 157 (306)
Q Consensus 134 l~~~~~~~~~~~~a~~~~~~m~~~ 157 (306)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666544
No 358
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.04 E-value=4.9 Score=31.01 Aligned_cols=52 Identities=10% Similarity=-0.023 Sum_probs=27.0
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 242 CQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
+...|++-++++--.+++...|.+..+|..-+.+....-+.++|..-|....
T Consensus 240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555555554444443
No 359
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.99 E-value=7.3 Score=29.88 Aligned_cols=16 Identities=6% Similarity=0.104 Sum_probs=7.5
Q ss_pred ccCChHHHHHHHHHHH
Q 046638 175 HAGFIDKGLQYFYLMR 190 (306)
Q Consensus 175 ~~~~~~~a~~~~~~~~ 190 (306)
..+++.+|+.+|+++.
T Consensus 166 ~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555544443
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.91 E-value=0.6 Score=28.63 Aligned_cols=45 Identities=7% Similarity=0.042 Sum_probs=33.0
Q ss_pred hcCCHHHHHHHHHHHhhcCCC---chHHHHHHHHHHhhcCChhhHHHH
Q 046638 244 VHGNREIAVRSAKRVLDLWPN---DPAIYVLLSNVSKATDCWDDAGDI 288 (306)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~ 288 (306)
...+.++|+..|+.+++..++ ...++..|+.+|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888885444 334566677788888888887765
No 361
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.86 E-value=1.5 Score=31.83 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCC
Q 046638 247 NREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDC 281 (306)
Q Consensus 247 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 281 (306)
-+++|+.-|++++.++|+...++..++.+|...+.
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 35677788888888999999999999999887553
No 362
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.52 E-value=1.6 Score=32.88 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=54.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhcC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hHHHHHHHHH
Q 046638 203 YTAIVGLLGRAGFLNEAESFINSMSR-NPG-PSVYKALLSACQVHGNREIAVRSAKRVLDLWPND---PAIYVLLSNV 275 (306)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 275 (306)
.+..+..+.+.+...+++...+.-.+ +|. ..+-..+++.++-.|++++|..-++-+-++.|++ ..+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556777888999999998876554 554 4456678889999999999999999888888864 3345555543
No 363
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.30 E-value=15 Score=32.63 Aligned_cols=173 Identities=12% Similarity=0.012 Sum_probs=89.2
Q ss_pred hHHHHHHHHhcCcC-CchhHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------cCCCccHHHHHHHHHHHHccC--
Q 046638 113 INDANKVFSSMDER-DLVSWNSLLLG-----CAHHGYSREAVQLFEQMQK-------TEIKPDGTTFLVVLSACCHAG-- 177 (306)
Q Consensus 113 ~~~a~~~~~~~~~~-~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~-- 177 (306)
...|.++++...+. +...-..+..+ +....+.+.|+.+|+.+.. .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 34566666666542 33333333322 3345677777777777655 33 2223445555665532
Q ss_pred ---ChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhcc---CChHHHHHHHHHhcCCCChhhHHHHHHHHH----hcCC
Q 046638 178 ---FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA---GFLNEAESFINSMSRNPGPSVYKALLSACQ----VHGN 247 (306)
Q Consensus 178 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 247 (306)
+.+.|..++....+.+. |+. -..+...+... .+...|.++|...........+-.+...|. ...+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~---~~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN---PDA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC---chH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCC
Confidence 55667777777665542 233 33344433332 356677777777776544443333333322 2346
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHH--HHHhhcCChhhHHHHHHHHhhcC
Q 046638 248 REIAVRSAKRVLDLWPNDPAIYVLLS--NVSKATDCWDDAGDIRTLMYNRG 296 (306)
Q Consensus 248 ~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~~~ 296 (306)
...|..+++++-+.++. .+...+. ..+.. ++++.+.-.+..+...|
T Consensus 380 ~~~A~~~~k~aA~~g~~--~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGNP--SAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHccCh--hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 67777777777776532 2222222 22222 56666555555554433
No 364
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.01 E-value=10 Score=30.14 Aligned_cols=109 Identities=7% Similarity=0.026 Sum_probs=0.0
Q ss_pred hHHHHhhhh-----hccCcchHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhH
Q 046638 12 SLDFQNVYS-----SVRTRNQISWNAIIAGFCN-----LGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG 81 (306)
Q Consensus 12 ~~~A~~~~~-----~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (306)
+.+|.++|+ +-.-.|...-..+++.... ..-+-+.+..+. ...+-.++..+...++..+++.+++.+-
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~--~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLV--STFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHH--hccccCCChhHHHHHHHHHHhcccHHHH
Q ss_pred HHHHHHHHHc-CCCccHHHHHHHHHHHHhcCChHHHHHHHHh
Q 046638 82 KQMHALIFKI-GYDSNVFVQNRLVFMYAICGAINDANKVFSS 122 (306)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 122 (306)
.++++..... ++..|...|..++......|+..-..++..+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
No 365
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.70 E-value=2.6 Score=26.85 Aligned_cols=53 Identities=19% Similarity=0.039 Sum_probs=34.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--chHHHHHHHHHHhhcCChh
Q 046638 231 GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN--DPAIYVLLSNVSKATDCWD 283 (306)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 283 (306)
|...-..+...+...|++++|++.+-.+++.+|+ +...-..|+..+.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3345556667788888888888888888876554 4566777777777777644
No 366
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.23 E-value=3.2 Score=33.20 Aligned_cols=98 Identities=9% Similarity=0.044 Sum_probs=62.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHH
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAG---IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNR 102 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (306)
.+.+-..++..-....+++.++..+-+++... ..|+.. -.++++.| -.-++++++.++..-++.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHH
Confidence 44445555555556677788877777765431 112221 22233332 23356677777777778888888888888
Q ss_pred HHHHHHhcCChHHHHHHHHhcCc
Q 046638 103 LVFMYAICGAINDANKVFSSMDE 125 (306)
Q Consensus 103 l~~~~~~~g~~~~a~~~~~~~~~ 125 (306)
+++.+.+.+++.+|.++.-.|..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888888877766653
No 367
>PRK10941 hypothetical protein; Provisional
Probab=87.64 E-value=7.8 Score=30.66 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=51.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhcC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHH
Q 046638 203 YTAIVGLLGRAGFLNEAESFINSMSR-NPG-PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIY 269 (306)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 269 (306)
.+.+-.+|.+.++++.|.++.+.+.. .|+ +.-+.--.-.|.+.|.+..|..-++..++..|+++.+-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 45566678888999999999888876 343 44466566668899999999999999999888876544
No 368
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.61 E-value=6.8 Score=30.83 Aligned_cols=83 Identities=5% Similarity=-0.092 Sum_probs=43.9
Q ss_pred HHHHHhcCChHHHHHHHHhcC-cC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH-----
Q 046638 104 VFMYAICGAINDANKVFSSMD-ER---DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC----- 174 (306)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~----- 174 (306)
|.+++..|++.+++...-+-- .| -......-|-.|.+.+.+..+.++-..-....-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 556666677766665433222 12 222333345556777777777766665554322222333555554443
Q ss_pred ccCChHHHHHHH
Q 046638 175 HAGFIDKGLQYF 186 (306)
Q Consensus 175 ~~~~~~~a~~~~ 186 (306)
=.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 357777776665
No 369
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.15 E-value=2 Score=37.40 Aligned_cols=84 Identities=12% Similarity=0.080 Sum_probs=35.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 046638 40 LGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKV 119 (306)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 119 (306)
.|+...|..++.........-..+....|.+.+.+.|....|..++.+.+.... ..+-++..+..+|....++++|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHHHHH
Confidence 445555555544443322222223333344444444444444444444443331 1223334444444445555555555
Q ss_pred HHhcC
Q 046638 120 FSSMD 124 (306)
Q Consensus 120 ~~~~~ 124 (306)
|++..
T Consensus 699 ~~~a~ 703 (886)
T KOG4507|consen 699 FRQAL 703 (886)
T ss_pred HHHHH
Confidence 54443
No 370
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.97 E-value=27 Score=32.76 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 046638 30 WNAIIAGFCNLGSGEQALKCFSEMRQ 55 (306)
Q Consensus 30 ~~~li~~~~~~~~~~~a~~~~~~~~~ 55 (306)
|..|+..|...|+.++|+++|.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 66777778888888888888877765
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.95 E-value=1.5 Score=26.94 Aligned_cols=15 Identities=13% Similarity=-0.024 Sum_probs=6.1
Q ss_pred HHHHHhccCChHHHH
Q 046638 206 IVGLLGRAGFLNEAE 220 (306)
Q Consensus 206 l~~~~~~~~~~~~a~ 220 (306)
++.+|+..|++++++
T Consensus 49 l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 49 LIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 372
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.75 E-value=24 Score=31.92 Aligned_cols=192 Identities=12% Similarity=0.093 Sum_probs=116.6
Q ss_pred cchHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCh--hhHHHHHHHhc-cccchhhHHHHHHHHHHcCCCccH---
Q 046638 25 RNQISWNAIIAGFCNLGSGEQALKCFSEMRQ-AGIDIDY--FTITSIVGAIG-VISGFKEGKQMHALIFKIGYDSNV--- 97 (306)
Q Consensus 25 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~--- 97 (306)
.+...|..||. .|++.++.+.+ ..+.|.. .++-.+...+. ...+++.|...+++.....-.++.
T Consensus 28 ~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 35666777775 67777877774 3344433 34445555554 788999999999987654322222
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHhcCcC----Cc----hhHHHH-HHHHHhcCCHHHHHHHHHHHHhcC---CCccH
Q 046638 98 --FVQNRLVFMYAICGAINDANKVFSSMDER----DL----VSWNSL-LLGCAHHGYSREAVQLFEQMQKTE---IKPDG 163 (306)
Q Consensus 98 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~----~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~ 163 (306)
.....++..+.+.+... |...+++..+. .. ..+..+ +..+...+++..|.+.++.+.... ..|..
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 23345677788877766 88888876631 11 123333 233334489999999999886532 33444
Q ss_pred HHHHHHHHHHH--ccCChHHHHHHHHHHHhc-------CCCCCCcHhHHHHHHHHHh--ccCChHHHHHHHHHh
Q 046638 164 TTFLVVLSACC--HAGFIDKGLQYFYLMRND-------ASLEPPRAEHYTAIVGLLG--RAGFLNEAESFINSM 226 (306)
Q Consensus 164 ~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 226 (306)
..+..++.+.. +.+..+++.+.++++... +...+|...+|..+++.++ ..|++..+...++++
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555544 455566677766665221 1224567788888877664 467766666655544
No 373
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=86.29 E-value=6.5 Score=26.09 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046638 130 SWNSLLLGCAHHGYSREAVQLFEQMQK 156 (306)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 156 (306)
-|..|+..|...|.+++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355566666666666666666665544
No 374
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.97 E-value=7.4 Score=25.31 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=53.2
Q ss_pred chhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046638 77 GFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQK 156 (306)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 156 (306)
..++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+...-||...|-+|-. .+.|..+.+..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 345566655555544321 22222223445677788888888888888888888876655 356667777777777766
Q ss_pred cCCCccHHHHH
Q 046638 157 TEIKPDGTTFL 167 (306)
Q Consensus 157 ~~~~p~~~~~~ 167 (306)
.|- |....|.
T Consensus 97 sg~-p~lq~Fa 106 (115)
T TIGR02508 97 SGD-PRLQTFV 106 (115)
T ss_pred CCC-HHHHHHH
Confidence 653 4444443
No 375
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.94 E-value=6 Score=31.99 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=61.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhcCC----C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 046638 203 YTAIVGLLGRAGFLNEAESFINSMSRN----P--GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVS 276 (306)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 276 (306)
|.-=++-|.+..++..|...|.+-+.. | +...|+.-..+-...|++..|+.-..+++...|.+...|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 344455566777888888888776652 2 3345666666666778888888888888888888877777777777
Q ss_pred hhcCChhhHHHHHH
Q 046638 277 KATDCWDDAGDIRT 290 (306)
Q Consensus 277 ~~~g~~~~a~~~~~ 290 (306)
....++++|....+
T Consensus 164 ~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 164 LELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777555555443
No 376
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.89 E-value=22 Score=30.63 Aligned_cols=152 Identities=11% Similarity=-0.014 Sum_probs=89.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC---CCccH-----HHHHHH-HHHHHccCChHHHHHHHHHHHhcCCCCCCcHhH--HH
Q 046638 136 LGCAHHGYSREAVQLFEQMQKTE---IKPDG-----TTFLVV-LSACCHAGFIDKGLQYFYLMRNDASLEPPRAEH--YT 204 (306)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~m~~~~---~~p~~-----~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~ 204 (306)
-+-.-.|++.+|++-...|.+.- +.|.. .....+ ..-++..|-++.|..-|....+.... .+... -.
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~--~dl~a~~nl 408 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES--IDLQAFCNL 408 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH--HHHHHHHHH
Confidence 33445789999999888887632 22211 112223 33345667888888888666543321 13322 24
Q ss_pred HHHHHHhccCChHHHHHHHHHhcCCCChhhHHH--------HHHH--HHhcCCHHHHHHHHHHHhhcC-CC-----chHH
Q 046638 205 AIVGLLGRAGFLNEAESFINSMSRNPGPSVYKA--------LLSA--CQVHGNREIAVRSAKRVLDLW-PN-----DPAI 268 (306)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------l~~~--~~~~~~~~~a~~~~~~~~~~~-p~-----~~~~ 268 (306)
.++-.|.+.|+.+.-.++++.+... +..++.. ++.+ ....+++.+|.+.+.+.++.. .. ..-.
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~p~-nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~ 487 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIGPL-NTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACS 487 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCC-CCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 5567788888888888888877642 2221111 1222 346789999999999888732 11 1223
Q ss_pred HHHHHHHHhhcCChhhHHHHHH
Q 046638 269 YVLLSNVSKATDCWDDAGDIRT 290 (306)
Q Consensus 269 ~~~l~~~~~~~g~~~~a~~~~~ 290 (306)
...|+..+...|+..++.+..+
T Consensus 488 LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 488 LVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHHHHhcchHHHHhccc
Confidence 4455666777777777766543
No 377
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=85.52 E-value=35 Score=32.63 Aligned_cols=254 Identities=9% Similarity=-0.064 Sum_probs=141.5
Q ss_pred hhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCcc
Q 046638 17 NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSN 96 (306)
Q Consensus 17 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 96 (306)
.+.+.+..+++..--.-+..+.+.+.. ++...+..+++. ++...-...+.++.+.+........+..+++. +|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 445556677888877778877777754 455555566542 45444445555555443322223344444443 45
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHcc
Q 046638 97 VFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHA 176 (306)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 176 (306)
..+-...+..+...+.-+ ...+...+..+|...-...+.++.+.+..+. +.... -.++...-...+.++...
T Consensus 698 ~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 566566666666543221 2345556666777766677777776655432 22222 233555555666677666
Q ss_pred CChHH-HHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 046638 177 GFIDK-GLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSA 255 (306)
Q Consensus 177 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 255 (306)
+..+. +...+..+..+ +++.+-...+.++...|..+.+...+......++...-...+.++...+. +++...+
T Consensus 770 ~~~~~~~~~~L~~ll~D-----~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 770 GAGGAPAGDAVRALTGD-----PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred ccccchhHHHHHHHhcC-----CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 65443 33444444432 26677778888888888776665556666656666555566667766665 3455555
Q ss_pred HHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 256 KRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 256 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
..+++ +| +...-...+.++.+.+.-..+...+....
T Consensus 844 ~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 844 VEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 55553 33 33445555555555432334555554443
No 378
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=85.51 E-value=9.5 Score=26.16 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=34.6
Q ss_pred HHHHHHHHHhh--cCCCchHHHHHHHHHHhhcCChhhHHHHHHH
Q 046638 250 IAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRTL 291 (306)
Q Consensus 250 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 291 (306)
.+.++|+.|.. +....+..|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88889998887 4555778889999999999999999999864
No 379
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=85.45 E-value=9.2 Score=26.09 Aligned_cols=60 Identities=12% Similarity=0.223 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHH
Q 046638 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVG 208 (306)
Q Consensus 146 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (306)
+..+-++.+...++.|+.......+.+|.+.+++..|.++|+-++...+. ....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~---~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA---QKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc---HHHHHHHHHH
Confidence 44556667777788889999999999999999999999999888765542 3334555443
No 380
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=84.89 E-value=9.4 Score=26.46 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=44.5
Q ss_pred cHhHHHHHHHHHhccCC---hHHHHHHHHHhcC--CCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHH
Q 046638 199 RAEHYTAIVGLLGRAGF---LNEAESFINSMSR--NPGP--SVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAI 268 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~--~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 268 (306)
+..+-..+..++.+..+ ..+.+.+++.+.+ .|.. ....-|.-++.+.++++++.++.+..++..|++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 55566666667766554 4456667777764 2221 122234445778888888888888888888876543
No 381
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=84.46 E-value=15 Score=27.50 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046638 130 SWNSLLLGCAHHGYSREAVQLFEQMQKT 157 (306)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 157 (306)
..+.++..+...|+++.|-+.|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 4556666777777777777777777654
No 382
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=84.43 E-value=9.5 Score=34.04 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHccCChH
Q 046638 133 SLLLGCAHHGYSREAVQLFEQMQKTE--IKPDGTTFLVVLSACCHAGFID 180 (306)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~ 180 (306)
.|..+|..+|++..+.++++...... -+.-...|+..++...+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 56677777777777777777665432 1222344566666666666553
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=84.20 E-value=3.4 Score=24.15 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=26.1
Q ss_pred hHHHHhhhhhccC--cchHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046638 12 SLDFQNVYSSVRT--RNQISWNAIIAGFCNLGSGEQALKCFSEMRQ 55 (306)
Q Consensus 12 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 55 (306)
++...++++.++. +|-.-.-.+|.++...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4445555555532 3444445567777777777777777776654
No 384
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.98 E-value=24 Score=29.62 Aligned_cols=53 Identities=8% Similarity=0.033 Sum_probs=29.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHH--HHHHHHHHHH--ccCChHHHHHHHHHHHh
Q 046638 138 CAHHGYSREAVQLFEQMQKTEIKPDGT--TFLVVLSACC--HAGFIDKGLQYFYLMRN 191 (306)
Q Consensus 138 ~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 191 (306)
+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44667777777777777665 443333 2333334443 34556667666666544
No 385
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.37 E-value=41 Score=31.68 Aligned_cols=110 Identities=12% Similarity=-0.036 Sum_probs=69.0
Q ss_pred CchhhhhhcCChHHHHhhhhhccCcc-------hHHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCChhhHHH----
Q 046638 1 LQILTYSRCDSSLDFQNVYSSVRTRN-------QISWNAIIAGFCNLGSG--EQALKCFSEMRQAGIDIDYFTITS---- 67 (306)
Q Consensus 1 ali~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~---- 67 (306)
+|+..|...|..++|.++|......+ ...+--++..+.+.+.. +-.+++-....+....-....|..
T Consensus 509 ~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~ 588 (877)
T KOG2063|consen 509 ELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQ 588 (877)
T ss_pred HHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChh
Confidence 37889999999999999999875422 12233455555555554 556665555554432111111111
Q ss_pred --------HHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 046638 68 --------IVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC 110 (306)
Q Consensus 68 --------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (306)
.+-.+......+-+..+++.+....-.++....+.++..|...
T Consensus 589 ~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 589 EAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred hhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 1223456667778888888888766666777888888877654
No 386
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=83.18 E-value=8.1 Score=32.47 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHH
Q 046638 267 AIYVLLSNVSKATDCWDDAGDIRTLM 292 (306)
Q Consensus 267 ~~~~~l~~~~~~~g~~~~a~~~~~~m 292 (306)
.++..++-+|.-.+++.+|.+.|..+
T Consensus 165 s~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 165 STYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544443
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=82.69 E-value=11 Score=25.78 Aligned_cols=42 Identities=7% Similarity=0.033 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcC
Q 046638 83 QMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124 (306)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 124 (306)
+-+..+...++-|++.+...-+.++.+.+|+..|..+|+.++
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555555554
No 388
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.97 E-value=24 Score=28.09 Aligned_cols=197 Identities=13% Similarity=0.095 Sum_probs=116.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH-------HHHHHHhccccchhhHHHHHHHHH----HcCCCccHHHH
Q 046638 32 AIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI-------TSIVGAIGVISGFKEGKQMHALIF----KIGYDSNVFVQ 100 (306)
Q Consensus 32 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~ 100 (306)
.+.+...+.+++++|+..+.+.+..|+..|..+. ..+...|...|++..--+...... ...-+......
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 3556677889999999999999999887776554 346667777887766655554332 22222234455
Q ss_pred HHHHHHHHhc-CChHHHHHHHHhcCc---CC------chhHHHHHHHHHhcCCHHHHHHHHHH----HHhcCCCccHHHH
Q 046638 101 NRLVFMYAIC-GAINDANKVFSSMDE---RD------LVSWNSLLLGCAHHGYSREAVQLFEQ----MQKTEIKPDGTTF 166 (306)
Q Consensus 101 ~~l~~~~~~~-g~~~~a~~~~~~~~~---~~------~~~~~~l~~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~ 166 (306)
.+|+..+-.. ..++.-+++.....+ +. ...-.-++..+.+.|.+.+|+.+... +.+.+-+|+..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 5666655443 346666666665553 11 12234567788889999998876654 4444555655544
Q ss_pred HHH-HHHHHccCChHHHHHHHHHHH--hcCCCCCCcHhHHHHHHHHH--hccCChHHHHHHHHHhcC
Q 046638 167 LVV-LSACCHAGFIDKGLQYFYLMR--NDASLEPPRAEHYTAIVGLL--GRAGFLNEAESFINSMSR 228 (306)
Q Consensus 167 ~~l-~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~ 228 (306)
..+ -.+|-...+..++..-+...+ ......||....-.-|+.+. |...++..|...|-+..+
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 322 235555566655555443322 22334455555555555543 444567777777766654
No 389
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=81.95 E-value=20 Score=27.25 Aligned_cols=33 Identities=9% Similarity=0.170 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCC
Q 046638 266 PAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIR 298 (306)
Q Consensus 266 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 298 (306)
......++....+.|+.++|.+.|.++...+-.
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 345666777778888888888888777755443
No 390
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=81.45 E-value=13 Score=27.35 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=13.9
Q ss_pred HHhccCChHHHHHHHHHhcCCCChhh
Q 046638 209 LLGRAGFLNEAESFINSMSRNPGPSV 234 (306)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (306)
.|.+.|.+++|.+++++....|+...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~d~~~~~ 145 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFSDPESQK 145 (200)
T ss_pred HHHhcCchHHHHHHHHHHhcCCCchh
Confidence 45555555555555555554444433
No 391
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.00 E-value=27 Score=27.96 Aligned_cols=60 Identities=15% Similarity=0.051 Sum_probs=42.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhc
Q 046638 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (306)
++......|...|.+.+|.++.++...-. |.+...+..++..+...|+--.|..-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld---pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD---PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC---hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 44555667778888888888888777533 4577778888888888888666666665554
No 392
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.69 E-value=46 Score=30.54 Aligned_cols=146 Identities=12% Similarity=0.097 Sum_probs=73.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHh
Q 046638 135 LLGCAHHGYSREAVQLFEQMQKTEIKP---DGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLG 211 (306)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (306)
+..+.+.+.+++|++.-+... |..| -.......+..+...|++++|-...-.|.. .+..-|...+..+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g------n~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG------NNAAEWELWVFKFA 434 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc------chHHHHHHHHHHhc
Confidence 444556677777776665543 2222 123344556666666777766666555542 14444555555555
Q ss_pred ccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---------------------CchHHHH
Q 046638 212 RAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWP---------------------NDPAIYV 270 (306)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---------------------~~~~~~~ 270 (306)
..++......++=.-..+.++..|..++..+.. .+. .-|.+.++..| .+...-.
T Consensus 435 e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e 509 (846)
T KOG2066|consen 435 ELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLE 509 (846)
T ss_pred cccccchhhccCCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHH
Confidence 555444333222111112334455555555444 111 11111111111 1223445
Q ss_pred HHHHHHhhcCChhhHHHHHHHHh
Q 046638 271 LLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 271 ~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
.|+..|...|++.+|.+.+-..+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 58888888999999988775543
No 393
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=80.35 E-value=5.1 Score=32.00 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=31.7
Q ss_pred ccCChHHHHHHHHHhcC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHH
Q 046638 212 RAGFLNEAESFINSMSR-N-PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAI 268 (306)
Q Consensus 212 ~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 268 (306)
+.|+.++|..+|+.... . .++.....+....-..+++-+|-.+|-+++...|.+...
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 55666666666666554 1 233333344444444556666666666666666665433
No 394
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=80.31 E-value=33 Score=28.62 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC-chHHHHHHHHHH-hhcCChhhHHHHHHHHhh
Q 046638 238 LLSACQVHGNREIAVRSAKRVLDLWPN-DPAIYVLLSNVS-KATDCWDDAGDIRTLMYN 294 (306)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~ 294 (306)
.+..+.+.|-+..|.++.+-++.++|. ||......+..| .+.++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 355677888899999998888888887 776666666655 456667666777665543
No 395
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=79.96 E-value=2.2 Score=35.97 Aligned_cols=100 Identities=15% Similarity=0.034 Sum_probs=73.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CC-hhhHHHHHHHHHhcC
Q 046638 169 VLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PG-PSVYKALLSACQVHG 246 (306)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~l~~~~~~~~ 246 (306)
-+......+.++.|..++.++.+.. |..+..|..-..++.+.+++..|+.=+.+..+. |. ...|..-..++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld---pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD---PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC---CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 3556677788999999999888654 445666666678889999999988877776652 33 234544556677888
Q ss_pred CHHHHHHHHHHHhhcCCCchHHHHH
Q 046638 247 NREIAVRSAKRVLDLWPNDPAIYVL 271 (306)
Q Consensus 247 ~~~~a~~~~~~~~~~~p~~~~~~~~ 271 (306)
.+.+|...|+......|+++..-..
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHH
Confidence 8999999999999999988654433
No 396
>PRK11619 lytic murein transglycosylase; Provisional
Probab=79.66 E-value=49 Score=30.19 Aligned_cols=224 Identities=7% Similarity=-0.066 Sum_probs=108.6
Q ss_pred cchhhHHHHHHHHHHcC-CCcc--HHHHHHHHHHHHhcCChHHHHHHHHhcCc--CCchhHHHHHHHHHhcCCHHHHHHH
Q 046638 76 SGFKEGKQMHALIFKIG-YDSN--VFVQNRLVFMYAICGAINDANKVFSSMDE--RDLVSWNSLLLGCAHHGYSREAVQL 150 (306)
Q Consensus 76 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~ 150 (306)
.+.+.|..++....... ..+. ..++..++......+..++|...++.... .+......-+..-.+.++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 44566666666653332 2211 12233333333332224555666655442 2333344444444566777777777
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC---------------C-C--CcH------hHHHHH
Q 046638 151 FEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASL---------------E-P--PRA------EHYTAI 206 (306)
Q Consensus 151 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------~-~--~~~------~~~~~l 206 (306)
+..|..... -...-..-+..++...|+.++|..+|+.+.....+ . + |.. ..-..-
T Consensus 335 i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~r 413 (644)
T PRK11619 335 LARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMAR 413 (644)
T ss_pred HHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHH
Confidence 776643221 12233344566656667777777776665332100 0 0 000 001122
Q ss_pred HHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC-C--CchHHHHHHHHHHhhcCChh
Q 046638 207 VGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLW-P--NDPAIYVLLSNVSKATDCWD 283 (306)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p--~~~~~~~~l~~~~~~~g~~~ 283 (306)
+..+...|+...|...+..+....+......+.......|..+.++.........+ . .-|..|...+..+.+.-.++
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34455667777777777776665555555555555666777777766655433210 0 01223444444454444455
Q ss_pred hHHHHHHHHhhcCCCCC
Q 046638 284 DAGDIRTLMYNRGIRKK 300 (306)
Q Consensus 284 ~a~~~~~~m~~~~~~~~ 300 (306)
.++-.--...++++.|.
T Consensus 494 ~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 494 QSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 44432222235555554
No 397
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.54 E-value=30 Score=27.62 Aligned_cols=202 Identities=9% Similarity=0.061 Sum_probs=115.0
Q ss_pred hhhhhhcCChHHHHhhhhhccCc----c-------hHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCChhhHHH
Q 046638 3 ILTYSRCDSSLDFQNVYSSVRTR----N-------QISWNAIIAGFCNLGSGEQALKCFSEMR----QAGIDIDYFTITS 67 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~~~----~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ 67 (306)
.+-.++.+++++|+..+.++... + ..+...+...|...|+...--+...... .-.-+.......+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 34467889999999999887543 2 2345567788999998877766665432 2222223455667
Q ss_pred HHHHhcc-ccchhhHHHHHHHHHHcCCCcc-----HHHHHHHHHHHHhcCChHHHHHHHHhcC----c----CCchhHHH
Q 046638 68 IVGAIGV-ISGFKEGKQMHALIFKIGYDSN-----VFVQNRLVFMYAICGAINDANKVFSSMD----E----RDLVSWNS 133 (306)
Q Consensus 68 l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~----~~~~~~~~ 133 (306)
++.-+.. ..+++..+.+.....+-..... ...-.-++..+.+.|.+.+|+.+...+. + ++..+...
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 7776643 4567777777777665332211 1223457888999999999998765443 2 33332222
Q ss_pred H-HHHHHhcCCHHHHHHHHHHHHhc----CCCccHHHHHHHHHH--HHccCChHHHHHHHHHHHhcCCCCCCcHhHHH
Q 046638 134 L-LLGCAHHGYSREAVQLFEQMQKT----EIKPDGTTFLVVLSA--CCHAGFIDKGLQYFYLMRNDASLEPPRAEHYT 204 (306)
Q Consensus 134 l-~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 204 (306)
+ -.+|...++..++..-+...+.. -.+|....-.-++++ .|...++..|..+|-+..+.......+..+..
T Consensus 170 lESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~ 247 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACV 247 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHH
Confidence 2 23444555555555544443321 134433333334443 24556777788887666654433333444433
No 398
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=79.35 E-value=5.2 Score=23.39 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=10.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 046638 133 SLLLGCAHHGYSREAVQLFEQM 154 (306)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~m 154 (306)
.+|.++...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555555555555555444
No 399
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=79.20 E-value=20 Score=25.35 Aligned_cols=64 Identities=9% Similarity=0.137 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 046638 48 KCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112 (306)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (306)
++.+.+.+.|++++.. -..++..+.+.++.-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3445567777766543 344566666777778899999999998877776666556666666653
No 400
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.92 E-value=13 Score=27.60 Aligned_cols=44 Identities=27% Similarity=0.444 Sum_probs=33.9
Q ss_pred HHHHHhcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 046638 221 SFINSMSR-NPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPN 264 (306)
Q Consensus 221 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 264 (306)
+..++... .|++..|..++..+...|+.++|.+..+++....|.
T Consensus 132 ~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 132 EWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 33344433 488888888888888889999998888888888883
No 401
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=78.49 E-value=36 Score=33.13 Aligned_cols=134 Identities=13% Similarity=0.026 Sum_probs=87.6
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHH-----hcCCC--ccHHHHHHHHHHHHccCChHHHHHHHHHHHhc-----C
Q 046638 126 RDLVSWNSLLLGCAHHGYSREAVQLFEQMQ-----KTEIK--PDGTTFLVVLSACCHAGFIDKGLQYFYLMRND-----A 193 (306)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-----~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 193 (306)
.....|..+...+-+.|+.++|+..-.+.. ..|.. -+...|..+...+...++...|...+.+.... +
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence 344577888888889999999988665431 12222 23445655555555666777777777665442 3
Q ss_pred CCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC----------CChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 046638 194 SLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN----------PGPSVYKALLSACQVHGNREIAVRSAKRVL 259 (306)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (306)
..+||...+++.+-..+...++++.|.++++..... +...++..+.......+++..|....+...
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 346666777777777777778899998888877541 345567777777777777777665555444
No 402
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.25 E-value=15 Score=23.52 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=10.8
Q ss_pred HHhcCCHHHHHHHHHHHhhc
Q 046638 242 CQVHGNREIAVRSAKRVLDL 261 (306)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~ 261 (306)
....|++++|...+++++++
T Consensus 51 ~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 44455555555555555553
No 403
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.05 E-value=45 Score=28.86 Aligned_cols=177 Identities=15% Similarity=0.068 Sum_probs=101.4
Q ss_pred HHHHhcCChHHHHHHHHhcCc-----CC--c-----hhHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCccHHHH--HHH
Q 046638 105 FMYAICGAINDANKVFSSMDE-----RD--L-----VSWNSLLL-GCAHHGYSREAVQLFEQMQKTEIKPDGTTF--LVV 169 (306)
Q Consensus 105 ~~~~~~g~~~~a~~~~~~~~~-----~~--~-----~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~l 169 (306)
-+-.-.|+..+|++-...|.+ |. . .....++. .++..|.++.|..-|....+.--.-|...+ ..+
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNL 410 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence 334456999999988888874 33 1 12233333 345678899999998887654333343333 244
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCCCCCcHh----HHHHHHHHHhccCChHHHHHHHHHhcCCCChhh--------HHH
Q 046638 170 LSACCHAGFIDKGLQYFYLMRNDASLEPPRAE----HYTAIVGLLGRAGFLNEAESFINSMSRNPGPSV--------YKA 237 (306)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~ 237 (306)
.-.|.+.|+.+.-.++++.+.-.+.....+.. .+..-.-.....+++.+|..++.+..+-.+..- ...
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvL 490 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVL 490 (629)
T ss_pred HHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 55788888888877777765432211000000 111111122467999999999988776323222 222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh---cCCCchHH-H--HHHHHHHhhcCC
Q 046638 238 LLSACQVHGNREIAVRSAKRVLD---LWPNDPAI-Y--VLLSNVSKATDC 281 (306)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~-~--~~l~~~~~~~g~ 281 (306)
+.......|+..++.+..+-... ..|+-+.. | ..+-..+...|+
T Consensus 491 Ls~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 491 LSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 33446678898888888877765 45653332 1 233344555554
No 404
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=77.71 E-value=15 Score=23.20 Aligned_cols=37 Identities=8% Similarity=0.022 Sum_probs=19.5
Q ss_pred hcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHH
Q 046638 109 ICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSRE 146 (306)
Q Consensus 109 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 146 (306)
..|+.+.|.+++..+. .....|..+++++...|.-+-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhh
Confidence 3355555555555555 555555555555555554433
No 405
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.07 E-value=23 Score=24.98 Aligned_cols=76 Identities=12% Similarity=0.191 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCc---------CCchhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCccHHHHHHHH
Q 046638 101 NRLVFMYAICGAINDANKVFSSMDE---------RDLVSWNSLLLGCAHHGY-SREAVQLFEQMQKTEIKPDGTTFLVVL 170 (306)
Q Consensus 101 ~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~ 170 (306)
|.++.-...-+++...+.+++.+.- .+...|++++.+..+..- ---+..+|.-|.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4445444555666666666665531 355677778777765555 335566777777767777788888888
Q ss_pred HHHHcc
Q 046638 171 SACCHA 176 (306)
Q Consensus 171 ~~~~~~ 176 (306)
.++.+-
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 776654
No 406
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=77.05 E-value=9.1 Score=32.55 Aligned_cols=106 Identities=11% Similarity=0.055 Sum_probs=78.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHH-HHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhcc
Q 046638 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTF-LVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRA 213 (306)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (306)
+..+...++++.|..++.+.++. .|+...| ..-..++.+.+++..|+.=+..+.+.. |.....|..-..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d---P~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD---PTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC---chhhheeeeccHHHHhH
Confidence 44566778999999999999876 5555544 444478889999999988877777644 44556666666777788
Q ss_pred CChHHHHHHHHHhcC-CCChhhHHHHHHHHHhc
Q 046638 214 GFLNEAESFINSMSR-NPGPSVYKALLSACQVH 245 (306)
Q Consensus 214 ~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~ 245 (306)
+++.+|...|+.... .|+..-....+.-|-..
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 888899988888776 48887777777666443
No 407
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=76.95 E-value=32 Score=26.65 Aligned_cols=57 Identities=9% Similarity=-0.006 Sum_probs=29.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHc-cCChHHHHHHHHHHH
Q 046638 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH-AGFIDKGLQYFYLMR 190 (306)
Q Consensus 134 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 190 (306)
++...-+.|+++++...++++...+...+..-.+.+..+|-. .|....+.+++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 445556666777777777776666555555545544444422 234444444444433
No 408
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.67 E-value=62 Score=29.78 Aligned_cols=183 Identities=13% Similarity=0.139 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCChHHHHHHHHhcCc-CCc----------hhHHHHHHHHHhcCCH
Q 046638 79 KEGKQMHALIFKIGYDSN---VFVQNRLVFMYAICGAINDANKVFSSMDE-RDL----------VSWNSLLLGCAHHGYS 144 (306)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~----------~~~~~l~~~~~~~~~~ 144 (306)
++-..++.+|.++--.|+ ..+...++..|....+++..+++.+.++. ||. ..|.-.++---+-|+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 334456677776533333 45666777788888889998888887764 321 1233333333456788
Q ss_pred HHHHHHHHHHHhc-C-CCccHHH-----HHH--HHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCC
Q 046638 145 REAVQLFEQMQKT-E-IKPDGTT-----FLV--VLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGF 215 (306)
Q Consensus 145 ~~a~~~~~~m~~~-~-~~p~~~~-----~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (306)
++|+...-.|.+. | +.||... |.- +-..|...+..+.|.++|++.-+.. | +..+--.+...+...|+
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve---P-~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE---P-LEYSGINLATLLRAAGE 335 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC---c-hhhccccHHHHHHHhhh
Confidence 8888887777653 2 4555332 211 1123345566788888888876533 2 33222223333333332
Q ss_pred -hHHHHHH------HHHhcCC-CC---hhhH---HHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 046638 216 -LNEAESF------INSMSRN-PG---PSVY---KALLSACQVHGNREIAVRSAKRVLDLWPND 265 (306)
Q Consensus 216 -~~~a~~~------~~~~~~~-~~---~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 265 (306)
++...++ +..+..+ .+ ...| ...+.+-.-.+++.+|+..-+.|.++.|+.
T Consensus 336 ~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 336 HFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 2222222 1111211 11 1111 123444556789999999999999988864
No 409
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=76.62 E-value=8.2 Score=30.95 Aligned_cols=76 Identities=9% Similarity=0.070 Sum_probs=56.8
Q ss_pred CcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-C-ChhhHHH-HHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHH
Q 046638 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-P-GPSVYKA-LLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLS 273 (306)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 273 (306)
.|+..|...+..-.+.+.+.+.-.+|.+...+ | ++..|-. --.-+...++++.+..+|.+.++.+|++|..|....
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 47788888887777888888888888887763 4 4444432 122366788999999999999999999888775443
No 410
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=76.47 E-value=21 Score=24.22 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhh-------cCCCchHHHH----HHHHHHhhcCChhhHHHHHHH
Q 046638 233 SVYKALLSACQVHGNREIAVRSAKRVLD-------LWPNDPAIYV----LLSNVSKATDCWDDAGDIRTL 291 (306)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~ 291 (306)
..+..|..++...|++++++.-.+..+. ++.+.-..|. .-+.++...|+.++|...|+.
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 3455566667777877776665555553 4555434443 334567788999999988864
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=76.26 E-value=18 Score=24.07 Aligned_cols=26 Identities=12% Similarity=0.316 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 046638 30 WNAIIAGFCNLGSGEQALKCFSEMRQ 55 (306)
Q Consensus 30 ~~~li~~~~~~~~~~~a~~~~~~~~~ 55 (306)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55555555555555666655555544
No 412
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=75.63 E-value=35 Score=26.44 Aligned_cols=58 Identities=5% Similarity=-0.055 Sum_probs=35.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcc-ccchhhHHHHHHHHHH
Q 046638 33 IIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGV-ISGFKEGKQMHALIFK 90 (306)
Q Consensus 33 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 90 (306)
++..+-+.|+++++...++++...+...+..--+.+..+|-. .|....+.+++....+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 556667788888888888888887666666666666555532 3445555555555443
No 413
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.39 E-value=14 Score=25.62 Aligned_cols=66 Identities=8% Similarity=-0.048 Sum_probs=48.7
Q ss_pred CChhhHHHHHHHHHhc---CCHHHHHHHHHHHhh-cCCC-chHHHHHHHHHHhhcCChhhHHHHHHHHhhc
Q 046638 230 PGPSVYKALLSACQVH---GNREIAVRSAKRVLD-LWPN-DPAIYVLLSNVSKATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 230 ~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 295 (306)
++..+--.+..++.+. .+..+.+.+++...+ -.|. .......|+.++.+.++++.++++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4444544556666654 456788999999997 5554 4456677888999999999999999988764
No 414
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.54 E-value=21 Score=31.87 Aligned_cols=86 Identities=13% Similarity=0.011 Sum_probs=66.5
Q ss_pred HhccCChHHHHHHHHHhcCC-C-C------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCC
Q 046638 210 LGRAGFLNEAESFINSMSRN-P-G------PSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDC 281 (306)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~-~-~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 281 (306)
..+..++..+.+.|..-..- | | ......+--.|....+.+.|.++++++.+.+|.++-+...+..+....|.
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 34567788888887755431 1 1 22355666678889999999999999999999988888888889999999
Q ss_pred hhhHHHHHHHHhhc
Q 046638 282 WDDAGDIRTLMYNR 295 (306)
Q Consensus 282 ~~~a~~~~~~m~~~ 295 (306)
-++|+.........
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999888776543
No 415
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.13 E-value=19 Score=26.79 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=14.7
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhc
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (306)
++.+|..++.++...|+.++|.+...++.
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555555444443
No 416
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=73.97 E-value=51 Score=27.52 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=43.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH-ccCChHHHHHHHHHHHh
Q 046638 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACC-HAGFIDKGLQYFYLMRN 191 (306)
Q Consensus 134 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 191 (306)
.+..+.+.|-+..|+++.+-+...++.-|......+|..|+ +.++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 35678889999999999999988776656666667777765 56777777777776544
No 417
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=73.87 E-value=8.9 Score=29.32 Aligned_cols=59 Identities=20% Similarity=0.190 Sum_probs=44.1
Q ss_pred HHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchH
Q 046638 209 LLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPA 267 (306)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 267 (306)
...+.++.+.+.+++.+...- .....|-.+...--+.|+++.|.+.|++.++++|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 445677888888888887763 34556777777777888888888888888888887643
No 418
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=73.74 E-value=34 Score=25.29 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=30.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhh
Q 046638 238 LLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDD 284 (306)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 284 (306)
.+..|.+.|.+++|.+++++... +|++...-.-|...-.+.+.+..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~ 162 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHP 162 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccH
Confidence 34569999999999999999988 66655444444444444433333
No 419
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.08 E-value=8.5 Score=31.28 Aligned_cols=83 Identities=14% Similarity=0.025 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHH
Q 046638 141 HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220 (306)
Q Consensus 141 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (306)
.|.++.|++.|...+...+ |....|..-.+++.+.++...|++=++...+.. |.+...|-.-..+....|++++|.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein---~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN---PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred CcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccC---cccccccchhhHHHHHhhchHHHH
Confidence 3445555555544443321 233334444444445555555544444443322 222233333333334444555554
Q ss_pred HHHHHhc
Q 046638 221 SFINSMS 227 (306)
Q Consensus 221 ~~~~~~~ 227 (306)
..|....
T Consensus 203 ~dl~~a~ 209 (377)
T KOG1308|consen 203 HDLALAC 209 (377)
T ss_pred HHHHHHH
Confidence 4444443
No 420
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.07 E-value=77 Score=29.14 Aligned_cols=119 Identities=8% Similarity=-0.033 Sum_probs=50.5
Q ss_pred HHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChh--hHHHHHHHHHhcCCHHH
Q 046638 173 CCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPS--VYKALLSACQVHGNREI 250 (306)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 250 (306)
+..-|+.++|..+.+++.......- ...-...+..+|+-.|+-....+++.-....+|.. -+..+.-++.-..+++.
T Consensus 511 L~~ygrqe~Ad~lI~el~~dkdpil-R~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDKDPIL-RYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCCchhh-hhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh
Confidence 3344555555555555554321000 11112234445555555555555554444332222 22222223444455555
Q ss_pred HHHHHHHHhh-cCCC-chHHHHHHHHHHhhcCChhhHHHHHHHHh
Q 046638 251 AVRSAKRVLD-LWPN-DPAIYVLLSNVSKATDCWDDAGDIRTLMY 293 (306)
Q Consensus 251 a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 293 (306)
...+.+-+.+ .+|. .-.+-..|+-+|...|. .+|+.+++-|.
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~ 633 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLT 633 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhh
Confidence 5555554444 2332 11233444445555553 44555555443
No 421
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=72.90 E-value=11 Score=30.16 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHH
Q 046638 130 SWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLV 168 (306)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 168 (306)
-|+..|..-.+.||+++|+.++++..+.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 356777888888888888888888888877644445543
No 422
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=72.77 E-value=28 Score=23.89 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHH
Q 046638 181 KGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINS 225 (306)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (306)
.+.++|..|...+.... ....|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~-~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTK-LALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTT-BHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHH-HHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55666666666554443 556666666666666666666666654
No 423
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=72.67 E-value=8.9 Score=29.34 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=45.2
Q ss_pred HHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 172 ACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
...+.++.+.+.+++.+..+ ..|.....|..+...-.+.|+++.|.+-|++..+
T Consensus 4 ~~~~~~D~~aaaely~qal~---lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE---LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred hhcccCChHHHHHHHHHHhh---cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 34677899999999998875 3356788899999999999999999999998876
No 424
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=72.62 E-value=28 Score=24.54 Aligned_cols=44 Identities=18% Similarity=0.074 Sum_probs=21.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccC
Q 046638 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177 (306)
Q Consensus 134 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 177 (306)
++..+.+.+++-.|.++++++.+.++..+..|....+..+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 44444444444555555555555555444444444444444444
No 425
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=72.43 E-value=51 Score=26.78 Aligned_cols=79 Identities=14% Similarity=0.058 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCC----CccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHH
Q 046638 145 REAVQLFEQMQKTEI----KPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAE 220 (306)
Q Consensus 145 ~~a~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (306)
+.|.+.|+.....+. ..+......++....+.|+.+.-..+++..... ++......++.+++...+.+...
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~-----~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS-----TSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT-----STHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc-----CCHHHHHHHHHhhhccCCHHHHH
Confidence 344555555544211 122333334444445555544444444433321 13444455555555555555555
Q ss_pred HHHHHhcC
Q 046638 221 SFINSMSR 228 (306)
Q Consensus 221 ~~~~~~~~ 228 (306)
++++....
T Consensus 222 ~~l~~~l~ 229 (324)
T PF11838_consen 222 RLLDLLLS 229 (324)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHcC
Confidence 55555544
No 426
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.31 E-value=25 Score=23.26 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=47.9
Q ss_pred cchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046638 76 SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQ 155 (306)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 155 (306)
...++|..+.+.+...+- -...+--+-+..+.+.|++++|+..=.....||...|-+|.. .+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345677777777766553 223333334456677788888744434444577777765544 46777777777777775
Q ss_pred hcCCCccHHHH
Q 046638 156 KTEIKPDGTTF 166 (306)
Q Consensus 156 ~~~~~p~~~~~ 166 (306)
..| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 554 2344444
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=71.84 E-value=12 Score=29.96 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 046638 29 SWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTI 65 (306)
Q Consensus 29 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 65 (306)
-||.-|....+.|++++|+.++++.++.|..--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3556777777777777777777777777654433444
No 428
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=71.03 E-value=1e+02 Score=29.64 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHccCCh
Q 046638 164 TTFLVVLSACCHAGFI 179 (306)
Q Consensus 164 ~~~~~l~~~~~~~~~~ 179 (306)
..-...+.++.+.|..
T Consensus 790 ~VR~aA~~aLg~~g~~ 805 (897)
T PRK13800 790 LVRAAALAALAELGCP 805 (897)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 3334444444444443
No 429
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.01 E-value=63 Score=27.25 Aligned_cols=56 Identities=11% Similarity=-0.023 Sum_probs=37.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHhc--cccchhhHHHHHHHHHHc
Q 046638 35 AGFCNLGSGEQALKCFSEMRQAGIDIDYF--TITSIVGAIG--VISGFKEGKQMHALIFKI 91 (306)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 91 (306)
..+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455888899999999888876 544444 3334444443 355677888888877654
No 430
>PF15469 Sec5: Exocyst complex component Sec5
Probab=70.83 E-value=39 Score=24.85 Aligned_cols=26 Identities=8% Similarity=0.298 Sum_probs=14.7
Q ss_pred ChhhHHHHHHHHhhcCCCCCCCCcCC
Q 046638 281 CWDDAGDIRTLMYNRGIRKKPGYSWV 306 (306)
Q Consensus 281 ~~~~a~~~~~~m~~~~~~~~~~~~~~ 306 (306)
..++..++++.+.+.+..++|.+.|+
T Consensus 154 s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 154 SQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 34445555555556566666665553
No 431
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=70.73 E-value=27 Score=27.31 Aligned_cols=55 Identities=9% Similarity=-0.044 Sum_probs=32.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcC-----C-CchHHHHHHHHHHhhcCChhhHHHHHHHH
Q 046638 238 LLSACQVHGNREIAVRSAKRVLDLW-----P-NDPAIYVLLSNVSKATDCWDDAGDIRTLM 292 (306)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~-----p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 292 (306)
+..-|...|++++|.++|+.+.... . -...+...+..++.+.|+.++...+-=++
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455666777777777777665421 1 12345556666777777777666554333
No 432
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.73 E-value=64 Score=27.24 Aligned_cols=166 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred chhhhhhcCChHHHHhhhhhccC------cchHHHHHHHHHHHhcCChHHHHHHHHHHHHc---------CCCCChhhHH
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRT------RNQISWNAIIAGFCNLGSGEQALKCFSEMRQA---------GIDIDYFTIT 66 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~ 66 (306)
+.+-|..+|+++.|.+.|-+.+. +....|-.+|..-.-.|+|.....+..+.... .+.+....+.
T Consensus 156 l~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~a 235 (466)
T KOG0686|consen 156 LGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAA 235 (466)
T ss_pred HHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHH
Q ss_pred HHHHHhccccchhhHHHHHHHHHHcCCC------ccHHHHHHHHHHHHhcCChHHHHHH-----HHhcCcCCchhHHHHH
Q 046638 67 SIVGAIGVISGFKEGKQMHALIFKIGYD------SNVFVQNRLVFMYAICGAINDANKV-----FSSMDERDLVSWNSLL 135 (306)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~-----~~~~~~~~~~~~~~l~ 135 (306)
.+...+.+ ++..|.+.|-........ |...+....+.+.+--++-+--+.+ |+...+-.+..+..+.
T Consensus 236 gLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~ 313 (466)
T KOG0686|consen 236 GLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLREILF 313 (466)
T ss_pred HHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----CCCccHHHHHHHHH
Q 046638 136 LGCAHHGYSREAVQLFEQMQKT-----EIKPDGTTFLVVLS 171 (306)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~ 171 (306)
.-| .+++...+++++++... -+.|...+...+|.
T Consensus 314 ~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 314 KFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 433
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.35 E-value=25 Score=22.46 Aligned_cols=21 Identities=14% Similarity=0.014 Sum_probs=11.4
Q ss_pred HHHHHccCChHHHHHHHHHHH
Q 046638 170 LSACCHAGFIDKGLQYFYLMR 190 (306)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~ 190 (306)
.......|++++|...+++..
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 334445566666666655544
No 434
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.31 E-value=1.5e+02 Score=31.45 Aligned_cols=249 Identities=13% Similarity=0.095 Sum_probs=137.0
Q ss_pred hhhhhcCChHHHHhhhhh-ccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHH
Q 046638 4 LTYSRCDSSLDFQNVYSS-VRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGK 82 (306)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (306)
..|+.-+++|...-+... .-.++ .+. -|-.....|+++.|...|+.+...+ ++...+++-++......+.++.++
T Consensus 1428 ~lY~~i~dpDgV~Gv~~~r~a~~s--l~~-qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i 1503 (2382)
T KOG0890|consen 1428 NLYGSIHDPDGVEGVSARRFADPS--LYQ-QILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEI 1503 (2382)
T ss_pred HHHHhcCCcchhhhHHHHhhcCcc--HHH-HHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHH
Confidence 478889999998888774 33333 333 3445668899999999999998865 233667777777777778887777
Q ss_pred HHHHHHHHcCCCccHHHHHHH-HHHHHhcCChHHHHHHHHhcCcCCchhHHHH--HHH----------------------
Q 046638 83 QMHALIFKIGYDSNVFVQNRL-VFMYAICGAINDANKVFSSMDERDLVSWNSL--LLG---------------------- 137 (306)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l--~~~---------------------- 137 (306)
...+-..... .+....++.+ +.+-.+.++++...+... ..+..+|... +..
T Consensus 1504 ~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~ 1579 (2382)
T KOG0890|consen 1504 LHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSREL 1579 (2382)
T ss_pred hhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHH
Confidence 7555554432 3333334333 445567777777666644 2222222222 111
Q ss_pred -------HHhcCCHHHHHHHHHHHHh-----------cCCCccHHH------HHHHHHHHHccCChHHHHHHHHH----H
Q 046638 138 -------CAHHGYSREAVQLFEQMQK-----------TEIKPDGTT------FLVVLSACCHAGFIDKGLQYFYL----M 189 (306)
Q Consensus 138 -------~~~~~~~~~a~~~~~~m~~-----------~~~~p~~~~------~~~l~~~~~~~~~~~~a~~~~~~----~ 189 (306)
+...|-+..+.++.-++.. .+..++..+ |..-+.--....+..+-+--+++ .
T Consensus 1580 ~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~ 1659 (2382)
T KOG0890|consen 1580 VIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDL 1659 (2382)
T ss_pred hhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHH
Confidence 1111111111111111100 011111111 11111110011111111111111 1
Q ss_pred HhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 046638 190 RNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
..+.........+|...++.....|+++.|...+-...+..-+..+--...-+-..|+...|+.++++.++
T Consensus 1660 ~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1660 RMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred hccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 11111222356788888999999999999998877766643444555566678889999999999999996
No 435
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=69.80 E-value=58 Score=26.36 Aligned_cols=70 Identities=10% Similarity=0.184 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHh----------cCCHHHHHHHH
Q 046638 82 KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAH----------HGYSREAVQLF 151 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a~~~~ 151 (306)
.++++.+.+.++.|.-.++.-+-..+.+.=.+.+++.+++.+... ..-|..|+..||. .|++..-.+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 356666777777777666666666667777777777777776631 1114444444442 46666666555
Q ss_pred H
Q 046638 152 E 152 (306)
Q Consensus 152 ~ 152 (306)
+
T Consensus 342 Q 342 (370)
T KOG4567|consen 342 Q 342 (370)
T ss_pred h
Confidence 4
No 436
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.35 E-value=17 Score=19.93 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=16.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 046638 38 CNLGSGEQALKCFSEMRQAGIDIDYFTITSIV 69 (306)
Q Consensus 38 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 69 (306)
.+.|-..++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555555554444
No 437
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=69.23 E-value=63 Score=26.59 Aligned_cols=137 Identities=8% Similarity=-0.033 Sum_probs=0.0
Q ss_pred chhhhhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhH
Q 046638 2 QILTYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEG 81 (306)
Q Consensus 2 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 81 (306)
+.+.++|.++-+.+..+-+.+..--.....+|..++-...=.+...+.+.+..+.. ||......++++.+........
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~~~~~ 249 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPASDLV 249 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCchhHH
Q ss_pred HHHHHHHHHcCCCccHHHHHHH-HHHHHhcCChHHHHHHHHhcCcCC-chhHHHHHHHHHh
Q 046638 82 KQMHALIFKIGYDSNVFVQNRL-VFMYAICGAINDANKVFSSMDERD-LVSWNSLLLGCAH 140 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~ 140 (306)
...+...++.....+..+...+ .++.....+.+....+++++-+.+ ...|+.+..=++.
T Consensus 250 ~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfaDLv~ 310 (340)
T PF12069_consen 250 AILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFADLVM 310 (340)
T ss_pred HHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHHHHHh
No 438
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=68.73 E-value=50 Score=25.19 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=13.2
Q ss_pred HHHHHHhccCChHHHHHHHHHhcCC
Q 046638 205 AIVGLLGRAGFLNEAESFINSMSRN 229 (306)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (306)
.++....+.|+.++|.+.|.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3444445555555555555555543
No 439
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=67.44 E-value=41 Score=23.68 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChh
Q 046638 217 NEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWD 283 (306)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 283 (306)
+.|.++.+-|- ...............|++.-|.++.+.++..+|++...-...+.++.+.|...
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 34444444443 22333334555678899999999999999999998888888888887766543
No 440
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.16 E-value=1.1e+02 Score=28.41 Aligned_cols=125 Identities=9% Similarity=-0.004 Sum_probs=72.5
Q ss_pred hhhhhhcCChHHHHhhhhhccC--c---chHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------------------
Q 046638 3 ILTYSRCDSSLDFQNVYSSVRT--R---NQISWNAIIAGFCNLGSGEQALKCFSEMRQAG-------------------- 57 (306)
Q Consensus 3 i~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------------------- 57 (306)
|+-+.+.+.+++|+++-+.... + -...+..+|..+.-.|++++|-...-.|....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 3456778889999998887643 1 34467788888889999998887777665321
Q ss_pred --C------CCChhhHHHHHHHhccccchhhHHHHHHHHHH---------cCCC-------ccHHHHHHHHHHHHhcCCh
Q 046638 58 --I------DIDYFTITSIVGAIGVISGFKEGKQMHALIFK---------IGYD-------SNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 58 --~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~-------~~~~~~~~l~~~~~~~g~~ 113 (306)
. ..+...|..++-.+.. .+...-.++....-. ...+ .+......|+..|...+++
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y 521 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKY 521 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccCh
Confidence 0 1233456655555544 222222222221000 0001 1122334477777778888
Q ss_pred HHHHHHHHhcCcCCc
Q 046638 114 NDANKVFSSMDERDL 128 (306)
Q Consensus 114 ~~a~~~~~~~~~~~~ 128 (306)
.+|++++-...++++
T Consensus 522 ~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 522 EKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHhccChHH
Confidence 888887777776543
No 441
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=67.02 E-value=91 Score=27.54 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=9.2
Q ss_pred hhhhhcCChHHHHhhhhhc
Q 046638 4 LTYSRCDSSLDFQNVYSSV 22 (306)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~ 22 (306)
.-|.+.+++++|..++..|
T Consensus 416 ~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 416 SQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHhcCCHHHHHHHHHhC
Confidence 3344455555555554444
No 442
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=66.93 E-value=25 Score=23.25 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 046638 31 NAIIAGFCNLGSGEQALKCFSEM 53 (306)
Q Consensus 31 ~~li~~~~~~~~~~~a~~~~~~~ 53 (306)
..++..|...|+.++|...+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34555677777888887777665
No 443
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=66.58 E-value=89 Score=27.28 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=73.8
Q ss_pred CCccHHHH-HHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhc--cCChHHHHHHHHHhcCC--CChh
Q 046638 159 IKPDGTTF-LVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGR--AGFLNEAESFINSMSRN--PGPS 233 (306)
Q Consensus 159 ~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~--~~~~ 233 (306)
..|+..|+ +.++..+-+.|-...|...+..+.. .+||+...|..+++.-.. .-+...+..+|+.+... .++.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~---lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE---LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh---CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChH
Confidence 34555555 5667777888888889998888875 446788888888764322 22377788888888763 6777
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCC
Q 046638 234 VYKALLSACQVHGNREIAVRSAKRVLD-LWPN 264 (306)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~ 264 (306)
.|-..+.--..+|..+.+-.++.++.+ ++|.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 777777766688888888888888776 5654
No 444
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=66.23 E-value=21 Score=20.05 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=20.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 046638 33 IIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSI 68 (306)
Q Consensus 33 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 68 (306)
+.-++.+.|++++|.+..+.+++. .|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 445667777777777777777773 4655444333
No 445
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.77 E-value=62 Score=25.20 Aligned_cols=81 Identities=9% Similarity=-0.046 Sum_probs=38.3
Q ss_pred hccccchhhHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCChHHHHHHHHhcCc--CCch-hHHHHHHHHHhcCCHHHH
Q 046638 72 IGVISGFKEGKQMHALIFKIGYDSNV-FVQNRLVFMYAICGAINDANKVFSSMDE--RDLV-SWNSLLLGCAHHGYSREA 147 (306)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a 147 (306)
|.....++.|+..|.+.+... |+. .-|..-+.++.+..+++.+..-..+..+ |+.+ ...-+..++.....+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 334445566666555555432 333 3334445555555555555554444443 2222 222334444555555555
Q ss_pred HHHHHHH
Q 046638 148 VQLFEQM 154 (306)
Q Consensus 148 ~~~~~~m 154 (306)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 5555554
No 446
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=65.60 E-value=29 Score=27.09 Aligned_cols=58 Identities=14% Similarity=0.062 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhcCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 201 EHYTAIVGLLGRAGFLNEAESFINSMSRN--------PGPSVYKALLSACQVHGNREIAVRSAKRV 258 (306)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (306)
.....++.-|...|++++|.++|+.+... +...+...+..++...|+.+..+.+-=++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33456778888899999999999888531 22333445556666677776666554433
No 447
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.03 E-value=9.5 Score=26.34 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=10.5
Q ss_pred CChHHHHHHHHHHHHcCCCCC
Q 046638 41 GSGEQALKCFSEMRQAGIDID 61 (306)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~ 61 (306)
|.-..|-.+|.+|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 333445555555555554444
No 448
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=64.86 E-value=27 Score=27.54 Aligned_cols=53 Identities=26% Similarity=0.264 Sum_probs=34.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHH
Q 046638 240 SACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLM 292 (306)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 292 (306)
..+.+.++++.|..+.++.+.++|.++.-..--+-+|.+.|...-|+.-+...
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~ 241 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYF 241 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHH
Confidence 34566667777777777777777766665666666666666666666655543
No 449
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.62 E-value=78 Score=25.96 Aligned_cols=56 Identities=5% Similarity=0.042 Sum_probs=30.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHH
Q 046638 169 VLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINS 225 (306)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (306)
+.-+..+.|+..+|.+.++.+.+...+.. -..+...|+.++....-+..+..++-+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t-~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLT-MLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444567777777777777665543211 233345566666665555555554443
No 450
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=64.25 E-value=39 Score=30.54 Aligned_cols=71 Identities=17% Similarity=0.006 Sum_probs=48.6
Q ss_pred CchhhhhhcCChHHHHhhhhhccCc------chHHHHHHHHHHHhcCChHH------HHHHHHHHHHcCCCCChhhHHHH
Q 046638 1 LQILTYSRCDSSLDFQNVYSSVRTR------NQISWNAIIAGFCNLGSGEQ------ALKCFSEMRQAGIDIDYFTITSI 68 (306)
Q Consensus 1 ali~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 68 (306)
+|..+|...|++..+.++++..... -...||..|+.+.+.|.++- |.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 3677889999999999999886432 25578888888888887642 333333332 45577788877
Q ss_pred HHHhcc
Q 046638 69 VGAIGV 74 (306)
Q Consensus 69 ~~~~~~ 74 (306)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766543
No 451
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=64.13 E-value=22 Score=22.11 Aligned_cols=81 Identities=14% Similarity=0.039 Sum_probs=38.1
Q ss_pred hhhhcCChHHHHhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHhccccchhhH
Q 046638 5 TYSRCDSSLDFQNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYF---TITSIVGAIGVISGFKEG 81 (306)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a 81 (306)
..++.|+++-...+++.....+. -+..+...+..|+. ++++.+.+.|..++.. .++.+.. .+..|+
T Consensus 3 ~A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~---- 71 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHY-AAENGN---- 71 (89)
T ss_dssp HHHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTH----
T ss_pred HHHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHH-HHHcCC----
Confidence 34667777777777774433332 11233344455553 4444555566555443 2222222 233343
Q ss_pred HHHHHHHHHcCCCcc
Q 046638 82 KQMHALIFKIGYDSN 96 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~ 96 (306)
.++.+.+.+.|..++
T Consensus 72 ~~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 72 LEIVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHHHTTT-TT
T ss_pred HHHHHHHHHcCCCCC
Confidence 334555556565544
No 452
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=63.18 E-value=96 Score=26.51 Aligned_cols=233 Identities=12% Similarity=-0.065 Sum_probs=123.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 046638 33 IIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112 (306)
Q Consensus 33 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (306)
-++++...| ..++..+....... ++...+.....++....+ ..+...+-.... .++..+....+.++...++
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~-~~~~~~L~~~L~---d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQED-ALDLRSVLAVLQ---AGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCC-hHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCc
Confidence 467777778 56777777766532 344444444444432222 222333333332 3456677788888888887
Q ss_pred hHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 046638 113 INDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRND 192 (306)
Q Consensus 113 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (306)
..-.-.+..-+..++.......+.++...+. .+...+....+ .++...-...+.++...+..+. ...+..+...
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a-~~~L~~al~d 189 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLS-ESTLRLYLRD 189 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccc-hHHHHHHHcC
Confidence 7766666666666666655555666655442 23344444433 3455555666666666666433 3333344321
Q ss_pred CCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHH
Q 046638 193 ASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLL 272 (306)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 272 (306)
++..+-..-+.+....|. +.|...+......++......+...+...|. +++...+....+. +.+-...
T Consensus 190 -----~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d----~~vr~~a 258 (410)
T TIGR02270 190 -----SDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA----AATRREA 258 (410)
T ss_pred -----CCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC----hhhHHHH
Confidence 255666666677777777 6666666554444444444444433333332 3555555544442 1244445
Q ss_pred HHHHhhcCChhhHHHHHH
Q 046638 273 SNVSKATDCWDDAGDIRT 290 (306)
Q Consensus 273 ~~~~~~~g~~~~a~~~~~ 290 (306)
+.++.+.|+..-+.-+.+
T Consensus 259 ~~AlG~lg~p~av~~L~~ 276 (410)
T TIGR02270 259 LRAVGLVGDVEAAPWCLE 276 (410)
T ss_pred HHHHHHcCCcchHHHHHH
Confidence 555555555544433333
No 453
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=63.18 E-value=55 Score=24.61 Aligned_cols=28 Identities=18% Similarity=0.065 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 201 EHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
...+.++..+...|+++.|.+.|.-+..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR 69 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIR 69 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 3445566666666666666666666654
No 454
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.96 E-value=51 Score=23.29 Aligned_cols=83 Identities=10% Similarity=-0.033 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCChhhHHHHHHHhccccc-hhhHHHHHHHHHHcCCCccHHHHH
Q 046638 28 ISWNAIIAGFCNLGSGEQALKCFSEMRQAG-----IDIDYFTITSIVGAIGVISG-FKEGKQMHALIFKIGYDSNVFVQN 101 (306)
Q Consensus 28 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 101 (306)
...|.++.....-+++...+.+++.+.... -..+...|..++.+..+... ---+..+|.-+.+.+.+++..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 346788888888889999888888874321 12456789999998876665 556678888888888889999999
Q ss_pred HHHHHHHhc
Q 046638 102 RLVFMYAIC 110 (306)
Q Consensus 102 ~l~~~~~~~ 110 (306)
.++.++.+-
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 999887765
No 455
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=62.79 E-value=28 Score=28.56 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHhcCC-CCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-chHHHHHHHHHHh
Q 046638 215 FLNEAESFINSMSRN-PGP----SVYKALLSACQVHGNREIAVRSAKRVLDLWPN-DPAIYVLLSNVSK 277 (306)
Q Consensus 215 ~~~~a~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~ 277 (306)
-.+++..++..+..+ |+. ..|-.+.......|.++..+.+|++++..+.. -...-..++..+.
T Consensus 118 p~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 456777777777654 543 35667777777788888888888888874432 2234444444443
No 456
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=62.73 E-value=29 Score=20.57 Aligned_cols=32 Identities=13% Similarity=0.021 Sum_probs=15.5
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 046638 26 NQISWNAIIAGFCNLGSGEQALKCFSEMRQAG 57 (306)
Q Consensus 26 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 57 (306)
....++.++...++..-.+.++..+.+....|
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444444444444555555555554444
No 457
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=62.56 E-value=45 Score=24.26 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=21.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCC
Q 046638 135 LLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178 (306)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 178 (306)
+..+...++.-.|.++++.+.+.++.++..|...-+..+.+.|-
T Consensus 32 L~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 32 LRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 33333334444555566666555555555554444555554443
No 458
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=62.44 E-value=40 Score=24.54 Aligned_cols=61 Identities=8% Similarity=0.062 Sum_probs=39.7
Q ss_pred HHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChH
Q 046638 53 MRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAIN 114 (306)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 114 (306)
+.+.|++++..-. .++..+...++.-.|.++++.+.+.++..+..|...-+..+...|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4555665554333 344444445666778888888888887777777666777777777543
No 459
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=62.27 E-value=1.6e+02 Score=29.18 Aligned_cols=153 Identities=12% Similarity=0.035 Sum_probs=96.2
Q ss_pred HHHhcCCHHHHHH------HHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHH---h--cCCCCCCcHhHHHH
Q 046638 137 GCAHHGYSREAVQ------LFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR---N--DASLEPPRAEHYTA 205 (306)
Q Consensus 137 ~~~~~~~~~~a~~------~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~--~~~~~~~~~~~~~~ 205 (306)
.....|.+.++.+ ++......-.++....|..+...+-+.|+.++|+..-.... + .+...|.+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3445566666666 55432211123345667888888889999999988654321 1 12222335566777
Q ss_pred HHHHHhccCChHHHHHHHHHhcC---------CCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCC---chH
Q 046638 206 IVGLLGRAGFLNEAESFINSMSR---------NPGPS-VYKALLSACQVHGNREIAVRSAKRVLD-----LWPN---DPA 267 (306)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~---~~~ 267 (306)
+.......+....|...+.+... .|... +++.+-..+...++++.|.++.+.+.. ..|. ...
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 77777777788888777766543 24433 344444445667899999999999887 2332 445
Q ss_pred HHHHHHHHHhhcCChhhHHHHH
Q 046638 268 IYVLLSNVSKATDCWDDAGDIR 289 (306)
Q Consensus 268 ~~~~l~~~~~~~g~~~~a~~~~ 289 (306)
.+..+.+.+...+++..|....
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
Confidence 6777888888888877765543
No 460
>PF13934 ELYS: Nuclear pore complex assembly
Probab=62.05 E-value=71 Score=24.61 Aligned_cols=103 Identities=22% Similarity=0.228 Sum_probs=55.7
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHH
Q 046638 132 NSLLLG--CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGL 209 (306)
Q Consensus 132 ~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 209 (306)
..++.+ +...+++++|.+.+.+- .+.|+-. ..++.++...|+.+.|..+++...-. ..+......++..
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~----l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGPP----LSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCC----CCCHHHHHHHHHH
Confidence 334444 34556677777766322 1222211 23666666678888888877665321 1133333444444
Q ss_pred HhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 046638 210 LGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV 244 (306)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (306)
..++.+.+|..+-+....+.....+..++..+..
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 5567788887777766653333455556655543
No 461
>PRK14700 recombination factor protein RarA; Provisional
Probab=61.89 E-value=84 Score=25.40 Aligned_cols=50 Identities=12% Similarity=0.029 Sum_probs=35.4
Q ss_pred hhHHHHHHHhc---cccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 046638 63 FTITSIVGAIG---VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112 (306)
Q Consensus 63 ~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (306)
..+--+++++. +..|.+.|+-++.+|++.|-.|.-..-..++.++-..|.
T Consensus 124 d~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 124 KEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred chhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 33444455553 457888888888999988887777777777777777664
No 462
>PRK13342 recombination factor protein RarA; Reviewed
Probab=61.81 E-value=1e+02 Score=26.35 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=32.9
Q ss_pred hHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccC
Q 046638 130 SWNSLLLGCAH---HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAG 177 (306)
Q Consensus 130 ~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 177 (306)
....+++++.+ .++.+.|+.++..|.+.|..|....-..+..++-..|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34445555544 5789999999999999998877665555555544444
No 463
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.65 E-value=15 Score=33.98 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=21.6
Q ss_pred ccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046638 212 RAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRV 258 (306)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 258 (306)
.+|+++.|++.-.++- +..+|..|+.....+|+.+-|+..|++.
T Consensus 655 e~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 4455555544444333 3444555555555555555555555543
No 464
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=61.58 E-value=1.5e+02 Score=28.32 Aligned_cols=26 Identities=8% Similarity=-0.064 Sum_probs=11.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhc
Q 046638 202 HYTAIVGLLGRAGFLNEAESFINSMS 227 (306)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (306)
++..-...+...|++..|.+++.++.
T Consensus 1233 ~~~~a~~ha~~~~~yGr~lK~l~kli 1258 (1304)
T KOG1114|consen 1233 VWQIAKKHAKALGQYGRALKALLKLI 1258 (1304)
T ss_pred heehhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444443
No 465
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=61.57 E-value=31 Score=20.45 Aligned_cols=52 Identities=6% Similarity=-0.123 Sum_probs=38.3
Q ss_pred CCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 046638 58 IDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC 110 (306)
Q Consensus 58 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (306)
+.|....++.++...++-.-.+.++..+.++.+.|. .+..+|.--+..+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 346777888888888888889999999999998885 4666666666655553
No 466
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=61.21 E-value=19 Score=17.79 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHhhcCCCchHHHHHH
Q 046638 247 NREIAVRSAKRVLDLWPNDPAIYVLL 272 (306)
Q Consensus 247 ~~~~a~~~~~~~~~~~p~~~~~~~~l 272 (306)
.++.|..+|++.+...|+ +.++...
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 467778888888777763 4555433
No 467
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=61.00 E-value=14 Score=25.61 Aligned_cols=31 Identities=6% Similarity=0.041 Sum_probs=23.6
Q ss_pred cccchhhHHHHHHHHHHcCCCccHHHHHHHHHH
Q 046638 74 VISGFKEGKQMHALIFKIGYDSNVFVQNRLVFM 106 (306)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (306)
..|.-..|..+|++|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 446667889999999999988874 6666543
No 468
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=60.90 E-value=19 Score=32.19 Aligned_cols=75 Identities=3% Similarity=-0.106 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhc
Q 046638 47 LKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSM 123 (306)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 123 (306)
....+.++.+-+..+...-.-++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.++|+...+..+...+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444433333444455555666666666666666655544322 2233444555556666655554444443
No 469
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=60.45 E-value=86 Score=25.03 Aligned_cols=149 Identities=11% Similarity=-0.016 Sum_probs=80.2
Q ss_pred ccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----CChHHHHHHHHhcCcC-CchhHHHHHHHHHh----cCCHH
Q 046638 75 ISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAIC----GAINDANKVFSSMDER-DLVSWNSLLLGCAH----HGYSR 145 (306)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~ 145 (306)
.+++..+...+......+. ......+...|... .+...|...|+..-+. .......|...|.. ..+..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 54 PPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLV 130 (292)
T ss_pred cccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHH
Confidence 3445555555555554331 13333333333332 3466677777755543 23344445555544 33778
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHcc-----C--ChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhc----cC
Q 046638 146 EAVQLFEQMQKTEIKPDGTTFLVVLSACCHA-----G--FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGR----AG 214 (306)
Q Consensus 146 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 214 (306)
+|..+|++.-+.|..+...+...+...+..- - +...|...+.+....+ +......+...|.. ..
T Consensus 131 ~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-----~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 131 KALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-----NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-----CHHHHHHHHHHHHcCCCCCc
Confidence 8888888887777654322233333333332 1 2236777777776654 34445555555533 34
Q ss_pred ChHHHHHHHHHhcCCCC
Q 046638 215 FLNEAESFINSMSRNPG 231 (306)
Q Consensus 215 ~~~~a~~~~~~~~~~~~ 231 (306)
+.++|...|.+..+..+
T Consensus 206 d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 67788888888776544
No 470
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.90 E-value=85 Score=24.81 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=43.3
Q ss_pred CcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHH-HHHHHHH
Q 046638 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIY-VLLSNVS 276 (306)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~-~~l~~~~ 276 (306)
.++.....++..|.+.|++.+|+.-|-.-. .++...+..++......|... +...| ...+--|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~~~---------------e~dlfi~RaVL~y 151 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGYPS---------------EADLFIARAVLQY 151 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTSS-----------------HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcCCc---------------chhHHHHHHHHHH
Confidence 477888899999999999988887664432 122222222333333333322 22222 2333446
Q ss_pred hhcCChhhHHHHHHHHhhc
Q 046638 277 KATDCWDDAGDIRTLMYNR 295 (306)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~ 295 (306)
...|+...|...++...+.
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 6667777777777666543
No 471
>PRK09462 fur ferric uptake regulator; Provisional
Probab=59.82 E-value=59 Score=22.96 Aligned_cols=61 Identities=10% Similarity=0.227 Sum_probs=39.4
Q ss_pred HHHHcCCCCChhhHHHHHHHhccc-cchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 046638 52 EMRQAGIDIDYFTITSIVGAIGVI-SGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (306)
.+.+.|++++..= ..++..+... +..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3556676555432 3344444443 45778889999998888777777766667777776643
No 472
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=59.62 E-value=89 Score=24.94 Aligned_cols=182 Identities=11% Similarity=-0.055 Sum_probs=116.6
Q ss_pred hcCChHHHHHHHHhcCc-CCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHc----cCCh
Q 046638 109 ICGAINDANKVFSSMDE-RDLVSWNSLLLGCAH----HGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCH----AGFI 179 (306)
Q Consensus 109 ~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~ 179 (306)
..+++..+...+..... .+......+...|.. ..+..+|..+|+.+-+.|..+ ....+...|.. ..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCcccCH
Confidence 34567777777777765 333444455555543 346889999999887776542 23334444444 4488
Q ss_pred HHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccC-------ChHHHHHHHHHhcCCCChhhHHHHHHHHHh----cCCH
Q 046638 180 DKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG-------FLNEAESFINSMSRNPGPSVYKALLSACQV----HGNR 248 (306)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 248 (306)
.+|..+|.+..+.+.. +...+...+...|.... +...|...+.+.-...++.....+...|.. ..+.
T Consensus 130 ~~A~~~~~~Aa~~g~~--~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 130 VKALKYYEKAAKLGNV--EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHHHcCCh--hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCH
Confidence 9999999999987742 11233555666665531 234788888888766566666666655533 4588
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHhhcC---------------ChhhHHHHHHHHhhcCCC
Q 046638 249 EIAVRSAKRVLDLWPNDPAIYVLLSNVSKATD---------------CWDDAGDIRTLMYNRGIR 298 (306)
Q Consensus 249 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~~~~ 298 (306)
++|...|+++-+... ......+. .+...| +...|...+......+..
T Consensus 208 ~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 208 KKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 999999999998766 44555555 444444 667777777776665543
No 473
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.61 E-value=45 Score=21.16 Aligned_cols=63 Identities=6% Similarity=0.014 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHH
Q 046638 149 QLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEA 219 (306)
Q Consensus 149 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (306)
+++..+.+.|+- +......+-.+-...|+.+.|.+++..+. .+ +..|..++.++...|.-+-|
T Consensus 23 ~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg------~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 23 DVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK------EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC------CcHHHHHHHHHHHcCchhhh
Confidence 444444444432 22222222222224455566666665554 22 12355555555555544433
No 474
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=58.21 E-value=24 Score=17.92 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=5.5
Q ss_pred HHhcCCHHHHHHH
Q 046638 242 CQVHGNREIAVRS 254 (306)
Q Consensus 242 ~~~~~~~~~a~~~ 254 (306)
+...|++++|+++
T Consensus 11 ~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 11 FYQKGKYDEAIHF 23 (36)
T ss_dssp HHHTT-HHHHHHH
T ss_pred HHHHhhHHHHHHH
Confidence 3444444444444
No 475
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.74 E-value=2e+02 Score=28.36 Aligned_cols=125 Identities=14% Similarity=0.043 Sum_probs=70.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCC-CCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CChhhHHHHHHHH
Q 046638 165 TFLVVLSACCHAGFIDKGLQYFYLMRNDASL-EPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PGPSVYKALLSAC 242 (306)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~ 242 (306)
-|..+++.+-+.+-.+.+.++-....+.-.. .|.-+.+++.+.+.....|.+-+|...+-+.... ........++..+
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivL 1064 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVL 1064 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3556667777777777777766555543322 2223445666777777777777776655443321 1123455566666
Q ss_pred HhcCCHH------------HHHH-HHHHHhhcCCC-chHHHHHHHHHHhhcCChhhHHHHH
Q 046638 243 QVHGNRE------------IAVR-SAKRVLDLWPN-DPAIYVLLSNVSKATDCWDDAGDIR 289 (306)
Q Consensus 243 ~~~~~~~------------~a~~-~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~ 289 (306)
+..|.++ +... +++..-+..|. .+..|..|-..+...+++.+|-.++
T Consensus 1065 fecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1065 FECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 6666543 2233 33333333332 3446666666777788888776653
No 476
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=57.21 E-value=30 Score=23.04 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=31.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCh
Q 046638 134 LLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFI 179 (306)
Q Consensus 134 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 179 (306)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555566667788888887777767777776677777776654
No 477
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=57.10 E-value=92 Score=24.30 Aligned_cols=88 Identities=13% Similarity=0.168 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHhcC----------------cCCchhHHHHHHHHHhcCCHH
Q 046638 82 KQMHALIFKIGYDSNVFVQNRLVFMYAICGAINDANKVFSSMD----------------ERDLVSWNSLLLGCAHHGYSR 145 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~ 145 (306)
.++.+-....+++-+..-..+++ +...||...|+.-++.-. +|.+.....++..| ..++++
T Consensus 179 ~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~ 255 (333)
T KOG0991|consen 179 KRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNID 255 (333)
T ss_pred HHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHH
Confidence 34444444444443333333333 445566666666555432 24444455555543 446788
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 046638 146 EAVQLFEQMQKTEIKPDGTTFLVVLSAC 173 (306)
Q Consensus 146 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 173 (306)
+|.+++.++.+.|..|... .+.+.+.+
T Consensus 256 ~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 256 EALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred HHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 8888888888887776433 33344443
No 478
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=56.93 E-value=61 Score=22.24 Aligned_cols=42 Identities=7% Similarity=0.068 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhh--cCCCchHHHHHHHHHHhhcCChhhHHHHHH
Q 046638 249 EIAVRSAKRVLD--LWPNDPAIYVLLSNVSKATDCWDDAGDIRT 290 (306)
Q Consensus 249 ~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 290 (306)
+...++|..|.. +.......|...+..+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 335677888777 344456678888888888999999998885
No 479
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.93 E-value=1.4e+02 Score=26.22 Aligned_cols=107 Identities=10% Similarity=0.140 Sum_probs=69.2
Q ss_pred HHHccCChHHHHHHHHHHHh---cCCCCCC---cHhHHHHHHHHHhccCChHHHHHHHHHhcC----------CC-----
Q 046638 172 ACCHAGFIDKGLQYFYLMRN---DASLEPP---RAEHYTAIVGLLGRAGFLNEAESFINSMSR----------NP----- 230 (306)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~----- 230 (306)
.+.-.|++.+|.+.+...-- .++...| .-..||.+.-.+.+.|.+.-+..+|.+... +|
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34567899999888754321 1111111 112235555566677777777777666542 11
Q ss_pred ------ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhc
Q 046638 231 ------GPSVYKALLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKAT 279 (306)
Q Consensus 231 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 279 (306)
-..+|| ..-.|...|++-.|.++|.+.......+|..|..|+.+|...
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 112343 344578899999999999999997777889999999998764
No 480
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=55.95 E-value=1.3e+02 Score=25.88 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCcC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCC
Q 046638 102 RLVFMYAICGAINDANKVFSSMDER---DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178 (306)
Q Consensus 102 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 178 (306)
.|+.-|...|++.+|....+++--| ....+.+++.+.-+.|+-...+.++++....|. .|.+.+-.+|
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf----- 584 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGF----- 584 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhh-----
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccC
Q 046638 179 IDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAG 214 (306)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 214 (306)
.++++.+..-....|.....++..+..+.+.|
T Consensus 585 ----~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~G 616 (645)
T KOG0403|consen 585 ----ERVYDSLPDLSLDVPNAYEKFERYVEECFQNG 616 (645)
T ss_pred ----hhhhccCcccccCCCcHHHHHHHHHHHHHHcC
No 481
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=55.91 E-value=1.1e+02 Score=24.97 Aligned_cols=69 Identities=16% Similarity=0.285 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCCCChhhHHHHHHHHHh----------cCCHHHHHH
Q 046638 184 QYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRNPGPSVYKALLSACQV----------HGNREIAVR 253 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a~~ 253 (306)
++|+.+.+. .+.| .-.++.-+--.+.+.=.+..++.+|+.+...|.. |..++..|+. .|++....+
T Consensus 264 EL~~~L~~~-~i~P-qfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r--fd~Ll~iCcsmlil~Re~il~~DF~~nmk 339 (370)
T KOG4567|consen 264 ELWRHLEEK-EIHP-QFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR--FDFLLYICCSMLILVRERILEGDFTVNMK 339 (370)
T ss_pred HHHHHHHhc-CCCc-cchhHHHHHHHHhccCCchhHHHHHHHHhcChhh--hHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 455555543 3333 5555555666666666777777777777754443 3334433332 466655555
Q ss_pred HHH
Q 046638 254 SAK 256 (306)
Q Consensus 254 ~~~ 256 (306)
+++
T Consensus 340 LLQ 342 (370)
T KOG4567|consen 340 LLQ 342 (370)
T ss_pred HHh
Confidence 543
No 482
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=55.63 E-value=29 Score=21.79 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=36.8
Q ss_pred hhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchh
Q 046638 17 NVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFK 79 (306)
Q Consensus 17 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (306)
.+++.+...++.+....-..-....+.+++.++++.+...|. .+|.....++...|...
T Consensus 20 ~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~----~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 20 YLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGK----QAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhcCchH
Confidence 355555555555555544445566677888888888877653 56777777766655443
No 483
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=55.42 E-value=47 Score=22.11 Aligned_cols=44 Identities=11% Similarity=0.076 Sum_probs=25.4
Q ss_pred HHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 046638 69 VGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGA 112 (306)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (306)
+..+...+..-.|.++++.+.+.++..+..|....++.+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33333444555666777777666665566555555666665554
No 484
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=55.28 E-value=46 Score=22.39 Aligned_cols=47 Identities=13% Similarity=0.086 Sum_probs=30.7
Q ss_pred HHHHHhccccchhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 046638 67 SIVGAIGVISGFKEGKQMHALIFKIGYDSNVFVQNRLVFMYAICGAI 113 (306)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (306)
.++..+...+..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 44555555666777888888888887777777666666666666643
No 485
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=55.23 E-value=95 Score=23.90 Aligned_cols=21 Identities=5% Similarity=-0.135 Sum_probs=10.7
Q ss_pred HHHhccccchhhHHHHHHHHH
Q 046638 69 VGAIGVISGFKEGKQMHALIF 89 (306)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~ 89 (306)
|......|+.+.|++....+-
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhC
Confidence 334455555555555554443
No 486
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=54.77 E-value=1.3e+02 Score=25.37 Aligned_cols=90 Identities=11% Similarity=0.000 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH------------HHHHHccCChHHHHHHHHHHHhcCCCCCCc
Q 046638 132 NSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVV------------LSACCHAGFIDKGLQYFYLMRNDASLEPPR 199 (306)
Q Consensus 132 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 199 (306)
..|...+-..|+.++|..++.++. ..||.++ ++.|...+++-.|.-+-+++.....- .|+
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~-~~~ 206 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFE-KPD 206 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcC-Ccc
Confidence 345666777888888888877652 1222222 44566677777776666665544322 234
Q ss_pred H-----hHHHHHHHHHhccCChHHHHHHHHHhcCC
Q 046638 200 A-----EHYTAIVGLLGRAGFLNEAESFINSMSRN 229 (306)
Q Consensus 200 ~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (306)
. ..|+.+++.....+.+=.+.+.|+.+-..
T Consensus 207 ~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 207 VQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 3 44677777777777777777777776553
No 487
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.77 E-value=1.1e+02 Score=24.62 Aligned_cols=66 Identities=6% Similarity=-0.038 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCccHHHH-HHHHHHHHccCChHHHHHHHHHHHhcCC
Q 046638 129 VSWNSLLLGCAHHGYSREAVQLFEQMQK----TEIKPDGTTF-LVVLSACCHAGFIDKGLQYFYLMRNDAS 194 (306)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 194 (306)
.+|..+...|++.++.+.+.++..+... .|.+.|.... ..+.-.|....-.++.++..+.+.+.|+
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 4555666666666666666666554432 2334333211 1222233333334555555555555554
No 488
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=54.53 E-value=57 Score=22.63 Aligned_cols=32 Identities=6% Similarity=0.087 Sum_probs=20.8
Q ss_pred hhHHHHHHHhccccchhhHHHHHHHHHHcCCC
Q 046638 63 FTITSIVGAIGVISGFKEGKQMHALIFKIGYD 94 (306)
Q Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 94 (306)
..+..++-.+...|+++.|+++.+.++++|.+
T Consensus 49 ~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 49 DVLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred chHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 34445555566777777777777777777643
No 489
>PRK09857 putative transposase; Provisional
Probab=54.38 E-value=1.1e+02 Score=24.75 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=38.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhcCChhhHHHHHHHHhhcCCCC
Q 046638 238 LLSACQVHGNREIAVRSAKRVLDLWPNDPAIYVLLSNVSKATDCWDDAGDIRTLMYNRGIRK 299 (306)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 299 (306)
++.-....++.++-.++++...+..|.......+++.-+.+.|..++++++.++|...|+..
T Consensus 212 ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 212 LFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 33333445565556666666655555544556667777777777777777777887777653
No 490
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=54.29 E-value=1.2e+02 Score=24.67 Aligned_cols=107 Identities=12% Similarity=0.074 Sum_probs=58.5
Q ss_pred hHHHHHHHHhcCcC--------CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHH
Q 046638 113 INDANKVFSSMDER--------DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQ 184 (306)
Q Consensus 113 ~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 184 (306)
.+.|.+.|++.... +......+.....+.|+.+.-..+++..... ++...-..++.+++-..+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 56777777766531 2223344555566677765544454444432 355566778888888889988889
Q ss_pred HHHHHHhcCCCCCCcHhHHHHHHHHHhccCCh--HHHHHHHHH
Q 046638 185 YFYLMRNDASLEPPRAEHYTAIVGLLGRAGFL--NEAESFINS 225 (306)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~ 225 (306)
+++.+.....+.+ ... ..++..+...+.. +.+.+++..
T Consensus 223 ~l~~~l~~~~v~~--~d~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLLSNDKVRS--QDI-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHCTSTS-T--TTH-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHcCCccccc--HHH-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 9998887443433 223 3344444433333 566655543
No 491
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.84 E-value=1.2e+02 Score=24.80 Aligned_cols=94 Identities=5% Similarity=-0.148 Sum_probs=50.2
Q ss_pred ccHHHHHHHHHHHHhcCC------------hHHHHHHHHhcCc--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046638 95 SNVFVQNRLVFMYAICGA------------INDANKVFSSMDE--R-DLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEI 159 (306)
Q Consensus 95 ~~~~~~~~l~~~~~~~g~------------~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 159 (306)
-|+.+|-.++..--..-. .+.-+.++++..+ | +...+..++..+.+..+.++..+.++++....+
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~ 96 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP 96 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 367777777765433321 2344455665543 2 334555566666677777777777777776533
Q ss_pred CccHHHHHHHHHHHHc---cCChHHHHHHHHHH
Q 046638 160 KPDGTTFLVVLSACCH---AGFIDKGLQYFYLM 189 (306)
Q Consensus 160 ~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 189 (306)
. +...|...+..... .-.++....+|.+.
T Consensus 97 ~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 97 G-SPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred C-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 2 44455555544332 22344444444443
No 492
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=53.69 E-value=1.2e+02 Score=24.51 Aligned_cols=169 Identities=12% Similarity=0.032 Sum_probs=0.0
Q ss_pred HhhhhhccCcchHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchhhHHHHHHHHHHcCCCc
Q 046638 16 QNVYSSVRTRNQISWNAIIAGFCNLGSGEQALKCFSEMRQAGIDIDYFTITSIVGAIGVISGFKEGKQMHALIFKIGYDS 95 (306)
Q Consensus 16 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 95 (306)
.++.+.+.......+..+-..---..+...+......+++.=-..+...-..-+.......+-+....+++.+....
T Consensus 49 ~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~--- 125 (291)
T PF10475_consen 49 KKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIK--- 125 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCccHHHHHHHH
Q 046638 96 NVFVQNRLVFMYAICGAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTE-----IKPDGTTFLVVL 170 (306)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~l~ 170 (306)
........+......|++..|++++.+..+- ...+..+-..-.-..++++-.....++.+.. ..-|+..|..+.
T Consensus 126 ~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~ 204 (291)
T PF10475_consen 126 TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQ 204 (291)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q ss_pred HHHHccCChHHHHHHHHH
Q 046638 171 SACCHAGFIDKGLQYFYL 188 (306)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~ 188 (306)
.+|.-.|+...+..-+..
T Consensus 205 ~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 205 EAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHhhhHHHHHHHHH
No 493
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=52.62 E-value=46 Score=19.46 Aligned_cols=48 Identities=15% Similarity=0.110 Sum_probs=22.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH-----HccCChHHHHHH
Q 046638 138 CAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSAC-----CHAGFIDKGLQY 185 (306)
Q Consensus 138 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~ 185 (306)
+.+.|++-+|-++++++-.....|....+..+|... .+.|+.+.|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 344566666666666664433333444444444432 244555555443
No 494
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=52.44 E-value=1.5e+02 Score=25.32 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=32.3
Q ss_pred HHHHHhccccchhhHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCChHHHHHHHHhcC
Q 046638 67 SIVGAIGVISGFKEGKQMHALIFKI--GYDSNVFVQNRLVFMYAICGAINDANKVFSSMD 124 (306)
Q Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 124 (306)
.|++.+.-.|++....+.++.+.+. |-.|...+-..++-+|.-.|++.+|.+.|-.+.
T Consensus 240 GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 240 GLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666766666666665543 222322222345566666777777777766543
No 495
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=52.20 E-value=26 Score=23.64 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCC
Q 046638 133 SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGF 178 (306)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 178 (306)
.++..+...+.+-.|.++++.+.+.+...+..|...-+..+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 3445555555566677777777776666666666556666665553
No 496
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.56 E-value=1.4e+02 Score=24.63 Aligned_cols=158 Identities=13% Similarity=0.056 Sum_probs=0.0
Q ss_pred CChHHHHHHHHhcCcCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 046638 111 GAINDANKVFSSMDERDLVSWNSLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFLVVLSACCHAGFIDKGLQYFYLMR 190 (306)
Q Consensus 111 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (306)
++.+....++..+.+.+...|-..+.. ...+..|...++.+..+ +..+.++-.+..+...
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce------------------~~~i~~D~~~l~~m~~~--neeki~eld~~iedae 95 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCE------------------SLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAE 95 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHh------------------hcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHH
Q ss_pred hcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-------CChhhHHHHHHH-HHhcCCHHHHHHHHHHHhhcC
Q 046638 191 NDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-------PGPSVYKALLSA-CQVHGNREIAVRSAKRVLDLW 262 (306)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~ 262 (306)
+..+... -...+......|++.|+-+.|.+.+++...+ -|+..+..-+.. |..+.-+.+-++..+.+++.+
T Consensus 96 enlGE~e-v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 96 ENLGESE-VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HhcchHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Q ss_pred CC---chHHHHHHHHHHhhcCChhhHHHHH
Q 046638 263 PN---DPAIYVLLSNVSKATDCWDDAGDIR 289 (306)
Q Consensus 263 p~---~~~~~~~l~~~~~~~g~~~~a~~~~ 289 (306)
-+ .-..-..-+..+....++.+|-.+|
T Consensus 175 gDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lf 204 (393)
T KOG0687|consen 175 GDWERRNRLKVYQGLYCMSVRNFKEAADLF 204 (393)
T ss_pred CChhhhhhHHHHHHHHHHHHHhHHHHHHHH
No 497
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.55 E-value=66 Score=21.02 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcCC-CChhhHHHHH
Q 046638 178 FIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSRN-PGPSVYKALL 239 (306)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~ 239 (306)
+...-.+.++++...+...||.. ...|.-.|.+.|+.+.|.+-|+.-..- |...+|--.+
T Consensus 52 Q~~~le~~~ek~~ak~~~vpPG~--HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 52 QTAALEKYLEKIGAKNGAVPPGY--HAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcH--HHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
No 498
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=50.98 E-value=78 Score=21.64 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=34.0
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHhc-------C-CCC-hhhHHHH----HHHHHhcCCHHHHHHHHHHHhh
Q 046638 199 RAEHYTAIVGLLGRAGFLNEAESFINSMS-------R-NPG-PSVYKAL----LSACQVHGNREIAVRSAKRVLD 260 (306)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~-~~~-~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~ 260 (306)
|..++..|..++...|++++++.--+... + +.+ -..|-.. ..++-..|+.++|...|+..-+
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 34556667777777888776554433332 2 122 2233332 2345668888888888876554
No 499
>PHA02875 ankyrin repeat protein; Provisional
Probab=50.74 E-value=1.6e+02 Score=25.06 Aligned_cols=198 Identities=12% Similarity=-0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCChhh--HHHHHHHhccccchhhHHHHHHHHHHcCCCccHH--HHHHHHHHHHhcCChHHHHHHHHh
Q 046638 47 LKCFSEMRQAGIDIDYFT--ITSIVGAIGVISGFKEGKQMHALIFKIGYDSNVF--VQNRLVFMYAICGAINDANKVFSS 122 (306)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~ 122 (306)
.++++.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++.
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Q ss_pred cCcCCchhHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHH--HHHHHHHccCChHHHHHHHHHHHhcCCCCC
Q 046638 123 MDERDLVSWN---SLLLGCAHHGYSREAVQLFEQMQKTEIKPDGTTFL--VVLSACCHAGFIDKGLQYFYLMRNDASLEP 197 (306)
Q Consensus 123 ~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 197 (306)
-...+..... +.+...+..|+. ++++.+.+.|..|+..... ..+...+..|+.+-...+++.-..-..
T Consensus 91 ~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~--- 163 (413)
T PHA02875 91 GKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI--- 163 (413)
T ss_pred CCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC---
Q ss_pred CcHhHHHHHHHHHhccCChHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 046638 198 PRAEHYTAIVGLLGRAGFLNEAESFINSMSRN--PGPSVYKALLSACQVHGNREIAVRSAK 256 (306)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~ 256 (306)
....-..-+...+..|+.+-+.-+++.-... .+.......+...+..|+.+-+.-+++
T Consensus 164 -~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 164 -EDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred -CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
No 500
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.01 E-value=39 Score=27.27 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=41.1
Q ss_pred HHccCChHHHHHHHHHHHhcCCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHhcC
Q 046638 173 CCHAGFIDKGLQYFYLMRNDASLEPPRAEHYTAIVGLLGRAGFLNEAESFINSMSR 228 (306)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (306)
..+.|+.++|.++|+...... |.++.....+.......+++-+|-++|-+...
T Consensus 126 ~~~~Gk~ekA~~lfeHAlala---P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALA---PTNPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HHhccchHHHHHHHHHHHhcC---CCCHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 357899999999999988644 55777777777776677788888888877764
Done!